Query gi|254780421|ref|YP_003064834.1| hypothetical protein CLIBASIA_01530 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 218 No_of_seqs 126 out of 1065 Neff 8.5 Searched_HMMs 23785 Date Mon May 30 11:25:06 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780421.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2ho1_A Type 4 fimbrial biogene 99.0 1.5E-07 6.1E-12 63.9 19.9 141 52-198 35-178 (252) 2 2xev_A YBGF; tetratricopeptide 98.9 4.6E-08 1.9E-12 67.0 13.8 116 93-210 6-123 (129) 3 2xev_A YBGF; tetratricopeptide 98.9 6.4E-08 2.7E-12 66.1 12.8 117 54-171 3-122 (129) 4 2vq2_A PILW, putative fimbrial 98.8 1.1E-06 4.8E-11 58.4 18.9 131 57-192 46-177 (225) 5 1w3b_A UDP-N-acetylglucosamine 98.8 1.6E-06 6.6E-11 57.5 19.1 136 61-203 245-381 (388) 6 2ho1_A Type 4 fimbrial biogene 98.8 1.4E-06 5.9E-11 57.8 18.6 135 57-196 75-209 (252) 7 2vsy_A XCC0866; transferase, g 98.8 2.5E-07 1.1E-11 62.4 14.4 131 66-203 2-133 (568) 8 2r5s_A Uncharacterized protein 98.8 1.1E-07 4.8E-12 64.5 11.7 154 55-215 8-163 (176) 9 3ieg_A DNAJ homolog subfamily 98.8 4E-06 1.7E-10 55.0 19.6 139 63-202 198-346 (359) 10 3ieg_A DNAJ homolog subfamily 98.7 7.7E-06 3.2E-10 53.2 19.3 146 58-205 159-316 (359) 11 2vq2_A PILW, putative fimbrial 98.7 3.2E-06 1.3E-10 55.6 17.3 127 58-190 13-141 (225) 12 3cv0_A Peroxisome targeting si 98.7 5.7E-06 2.4E-10 54.0 18.5 118 66-190 151-268 (327) 13 2fo7_A Synthetic consensus TPR 98.7 1.5E-06 6.5E-11 57.5 15.2 131 55-192 2-133 (136) 14 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.2E-06 5.2E-11 58.1 14.6 135 52-195 5-154 (213) 15 3gyz_A Chaperone protein IPGC; 98.7 7.2E-07 3E-11 59.6 13.2 116 89-210 36-151 (151) 16 1w3b_A UDP-N-acetylglucosamine 98.7 6.2E-06 2.6E-10 53.8 17.8 136 60-202 210-346 (388) 17 1fch_A Peroxisomal targeting s 98.7 8.5E-06 3.6E-10 52.9 18.5 119 68-191 196-314 (368) 18 3hym_B Cell division cycle pro 98.7 1.8E-06 7.5E-11 57.1 14.8 148 64-214 170-322 (330) 19 2gw1_A Mitochondrial precursor 98.7 8.8E-07 3.7E-11 59.0 13.2 125 59-190 276-400 (514) 20 3fp2_A TPR repeat-containing p 98.7 1.5E-06 6.1E-11 57.7 14.3 119 64-189 287-405 (537) 21 2vgx_A Chaperone SYCD; alterna 98.6 6.5E-07 2.7E-11 59.9 11.7 138 69-213 3-143 (148) 22 1fch_A Peroxisomal targeting s 98.6 8.1E-07 3.4E-11 59.3 11.9 73 129-202 219-292 (368) 23 2pl2_A Hypothetical conserved 98.6 1.1E-05 4.8E-10 52.2 17.7 139 56-200 42-189 (217) 24 3cv0_A Peroxisome targeting si 98.6 1.3E-06 5.5E-11 58.0 12.8 137 61-202 97-247 (327) 25 3mkr_A Coatomer subunit epsilo 98.6 1E-05 4.4E-10 52.4 17.3 122 63-189 140-261 (291) 26 3fp2_A TPR repeat-containing p 98.6 1.3E-05 5.7E-10 51.7 17.6 125 64-195 321-495 (537) 27 3edt_B KLC 2, kinesin light ch 98.6 1.2E-05 5.1E-10 52.0 17.4 102 89-190 85-197 (283) 28 2e2e_A Formate-dependent nitri 98.6 1.6E-06 6.6E-11 57.5 12.4 125 64-195 21-148 (177) 29 3mv2_B Coatomer subunit epsilo 98.5 6.2E-06 2.6E-10 53.8 14.9 136 54-191 101-240 (310) 30 2xcb_A PCRH, regulatory protei 98.5 1.9E-06 8.1E-11 56.9 12.2 119 88-211 17-138 (142) 31 2gw1_A Mitochondrial precursor 98.5 5.5E-06 2.3E-10 54.1 14.1 131 64-197 349-484 (514) 32 3hym_B Cell division cycle pro 98.5 1.4E-05 6E-10 51.6 15.5 138 61-204 133-279 (330) 33 2q7f_A YRRB protein; TPR, prot 98.5 6.3E-06 2.7E-10 53.7 13.5 133 61-200 99-232 (243) 34 2q7f_A YRRB protein; TPR, prot 98.5 4.5E-05 1.9E-09 48.5 17.7 138 59-203 63-201 (243) 35 3mv2_B Coatomer subunit epsilo 98.5 5.1E-06 2.1E-10 54.3 12.7 137 62-202 75-218 (310) 36 1qqe_A Vesicular transport pro 98.5 2.9E-05 1.2E-09 49.6 16.6 138 54-191 77-228 (292) 37 1xnf_A Lipoprotein NLPI; TPR, 98.4 3.7E-05 1.5E-09 49.0 16.5 131 59-193 83-246 (275) 38 1ihg_A Cyclophilin 40; ppiase 98.4 1.7E-05 7.3E-10 51.0 13.7 119 94-213 228-358 (370) 39 2dba_A Smooth muscle cell asso 98.3 1.5E-05 6.1E-10 51.5 12.8 115 91-211 30-144 (148) 40 1na0_A Designed protein CTPR3; 98.3 2.8E-05 1.2E-09 49.7 14.3 111 88-203 8-119 (125) 41 1nzn_A CGI-135 protein, fissio 98.3 3.4E-05 1.4E-09 49.2 14.2 99 95-197 7-109 (126) 42 1hz4_A MALT regulatory protein 98.3 0.00016 6.7E-09 45.1 19.1 61 129-189 255-320 (373) 43 3mkr_A Coatomer subunit epsilo 98.3 7.8E-05 3.3E-09 47.0 15.9 141 60-211 108-249 (291) 44 2vyi_A SGTA protein; chaperone 98.3 3.8E-05 1.6E-09 48.9 14.0 107 90-201 13-119 (131) 45 2r5s_A Uncharacterized protein 98.3 1.6E-05 6.8E-10 51.2 12.1 130 55-190 42-172 (176) 46 1a17_A Serine/threonine protei 98.3 4E-05 1.7E-09 48.8 13.9 98 51-154 11-108 (166) 47 3edt_B KLC 2, kinesin light ch 98.3 0.00011 4.6E-09 46.0 15.7 129 62-190 94-280 (283) 48 1elw_A TPR1-domain of HOP; HOP 98.3 4E-05 1.7E-09 48.8 13.4 104 92-200 7-110 (118) 49 3ffl_A Anaphase-promoting comp 98.3 9.7E-06 4.1E-10 52.6 10.2 135 56-209 23-164 (167) 50 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.6E-05 6.8E-10 51.2 11.2 61 91-155 319-379 (457) 51 1p5q_A FKBP52, FK506-binding p 98.2 6.2E-05 2.6E-09 47.6 14.0 60 91-154 198-257 (336) 52 1hxi_A PEX5, peroxisome target 98.2 1E-05 4.3E-10 52.5 9.2 98 91-193 19-116 (121) 53 1wao_1 Serine/threonine protei 98.2 2.7E-05 1.1E-09 49.9 11.0 91 98-193 15-105 (477) 54 1elr_A TPR2A-domain of HOP; HO 98.2 0.00011 4.6E-09 46.1 14.0 107 89-199 4-116 (131) 55 1xnf_A Lipoprotein NLPI; TPR, 98.2 0.00032 1.3E-08 43.2 16.3 99 88-191 42-140 (275) 56 2fbn_A 70 kDa peptidylprolyl i 98.2 0.0001 4.3E-09 46.3 13.8 80 129-209 90-169 (198) 57 2fo7_A Synthetic consensus TPR 98.2 7.7E-05 3.2E-09 47.0 13.1 114 91-209 3-116 (136) 58 2c2l_A CHIP, carboxy terminus 98.1 4.6E-05 1.9E-09 48.4 11.9 93 54-152 5-97 (281) 59 2vyi_A SGTA protein; chaperone 98.1 0.00012 4.9E-09 45.9 13.5 120 51-177 10-129 (131) 60 3gw4_A Uncharacterized protein 98.1 0.00021 9E-09 44.3 14.7 155 57-212 30-196 (203) 61 3gw4_A Uncharacterized protein 98.1 0.00047 2E-08 42.2 19.0 126 63-190 2-135 (203) 62 2ooe_A Cleavage stimulation fa 98.1 0.00027 1.1E-08 43.6 14.8 130 60-195 328-458 (530) 63 1na0_A Designed protein CTPR3; 98.1 0.00017 6.9E-09 45.0 13.5 115 55-176 11-125 (125) 64 1a17_A Serine/threonine protei 98.1 0.00031 1.3E-08 43.3 14.8 107 91-202 15-121 (166) 65 1zbp_A Hypothetical protein VP 98.1 4E-05 1.7E-09 48.8 10.0 129 59-193 3-131 (273) 66 2ifu_A Gamma-SNAP; membrane fu 98.1 0.00056 2.3E-08 41.7 18.2 133 60-192 83-225 (307) 67 2vgx_A Chaperone SYCD; alterna 98.0 0.00026 1.1E-08 43.8 13.6 97 52-154 20-116 (148) 68 2if4_A ATFKBP42; FKBP-like, al 98.0 2.2E-05 9.4E-10 50.3 8.1 136 50-190 176-327 (338) 69 1hh8_A P67PHOX, NCF-2, neutrop 98.0 5.5E-05 2.3E-09 47.9 9.8 95 57-153 41-147 (213) 70 2hr2_A Hypothetical protein; N 98.0 0.00032 1.3E-08 43.2 13.2 119 93-211 15-158 (159) 71 1hz4_A MALT regulatory protein 98.0 0.00018 7.4E-09 44.8 11.9 127 63-189 24-162 (373) 72 1pc2_A Mitochondria fission pr 98.0 0.00014 6.1E-09 45.3 11.3 95 98-196 7-105 (152) 73 2vsy_A XCC0866; transferase, g 97.9 0.00079 3.3E-08 40.8 14.5 129 55-190 25-156 (568) 74 3gyz_A Chaperone protein IPGC; 97.9 0.00062 2.6E-08 41.4 13.9 99 52-156 35-133 (151) 75 2if4_A ATFKBP42; FKBP-like, al 97.9 0.00024 1E-08 44.0 11.8 111 89-200 179-302 (338) 76 1qqe_A Vesicular transport pro 97.9 0.0011 4.7E-08 39.8 17.2 156 38-193 21-189 (292) 77 3k9i_A BH0479 protein; putativ 97.9 6.4E-05 2.7E-09 47.5 8.2 96 103-200 4-99 (117) 78 2xcb_A PCRH, regulatory protei 97.8 0.00049 2E-08 42.1 12.2 98 52-155 17-114 (142) 79 1hxi_A PEX5, peroxisome target 97.8 0.00017 6.9E-09 45.0 9.7 102 54-161 18-119 (121) 80 1elw_A TPR1-domain of HOP; HOP 97.8 0.00094 3.9E-08 40.3 13.1 114 52-172 3-116 (118) 81 2pl2_A Hypothetical conserved 97.8 0.0001 4.3E-09 46.3 8.2 144 58-204 10-160 (217) 82 2ifu_A Gamma-SNAP; membrane fu 97.8 0.0018 7.4E-08 38.6 16.5 95 59-153 121-221 (307) 83 3dra_A Protein farnesyltransfe 97.7 0.0019 8.2E-08 38.3 15.4 130 62-194 155-290 (306) 84 2uy1_A Cleavage stimulation fa 97.7 0.0021 9E-08 38.1 14.9 121 66-190 226-348 (493) 85 2ooe_A Cleavage stimulation fa 97.7 0.0013 5.6E-08 39.4 13.0 122 66-192 299-421 (530) 86 2h6f_A Protein farnesyltransfe 97.7 0.0013 5.7E-08 39.3 13.0 25 165-189 203-227 (382) 87 2kat_A Uncharacterized protein 97.7 0.00039 1.7E-08 42.6 9.6 80 106-190 2-81 (115) 88 1wao_1 Serine/threonine protei 97.6 4.8E-05 2E-09 48.3 4.3 124 55-185 8-133 (477) 89 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.0017 7.3E-08 38.6 12.1 109 91-200 270-389 (457) 90 2fbn_A 70 kDa peptidylprolyl i 97.6 0.00098 4.1E-08 40.2 10.7 139 46-189 31-184 (198) 91 2c2l_A CHIP, carboxy terminus 97.6 0.0016 6.9E-08 38.8 11.7 93 94-191 9-101 (281) 92 3n71_A Histone lysine methyltr 97.5 0.0038 1.6E-07 36.5 17.7 136 55-190 311-463 (490) 93 1nzn_A CGI-135 protein, fissio 97.5 0.00088 3.7E-08 40.5 9.8 108 63-175 11-121 (126) 94 1p5q_A FKBP52, FK506-binding p 97.5 0.0039 1.7E-07 36.4 13.1 113 92-205 150-273 (336) 95 2dba_A Smooth muscle cell asso 97.5 0.0041 1.7E-07 36.3 13.0 97 55-155 30-127 (148) 96 2kck_A TPR repeat; tetratricop 97.5 0.00062 2.6E-08 41.4 8.7 96 91-190 8-105 (112) 97 2kat_A Uncharacterized protein 97.4 0.00091 3.8E-08 40.4 9.1 79 70-154 2-80 (115) 98 2uy1_A Cleavage stimulation fa 97.4 0.0047 2E-07 36.0 12.5 96 91-191 215-315 (493) 99 1y8m_A FIS1; mitochondria, unk 97.4 0.0038 1.6E-07 36.5 11.8 67 129-195 41-110 (144) 100 2kc7_A BFR218_protein; tetratr 97.4 0.00073 3.1E-08 41.0 7.8 58 60-118 7-64 (99) 101 1ihg_A Cyclophilin 40; ppiase 97.3 0.0081 3.4E-07 34.5 12.2 117 46-172 235-351 (370) 102 1na3_A Designed protein CTPR2; 97.2 0.0039 1.6E-07 36.5 10.1 73 129-202 11-84 (91) 103 3dss_A Geranylgeranyl transfer 97.2 0.0019 7.8E-08 38.5 8.4 63 141-203 252-317 (331) 104 3dss_A Geranylgeranyl transfer 97.2 0.0097 4.1E-07 34.0 19.1 119 70-190 47-173 (331) 105 1pc2_A Mitochondria fission pr 97.2 0.0033 1.4E-07 36.9 9.3 105 64-173 9-116 (152) 106 3ma5_A Tetratricopeptide repea 97.1 0.00069 2.9E-08 41.1 5.7 63 128-191 8-70 (100) 107 3n71_A Histone lysine methyltr 97.1 0.011 4.8E-07 33.6 13.2 100 91-190 311-421 (490) 108 3k9i_A BH0479 protein; putativ 97.1 0.0036 1.5E-07 36.7 9.0 87 67-157 4-91 (117) 109 2v5f_A Prolyl 4-hydroxylase su 97.1 0.0054 2.3E-07 35.6 9.7 91 91-213 7-97 (104) 110 3ffl_A Anaphase-promoting comp 97.1 0.0017 7.3E-08 38.6 7.1 104 53-173 63-166 (167) 111 1na3_A Designed protein CTPR2; 97.1 0.0049 2.1E-07 35.8 9.4 83 89-176 9-91 (91) 112 2kc7_A BFR218_protein; tetratr 97.0 0.0074 3.1E-07 34.7 10.1 70 131-200 4-73 (99) 113 3dra_A Protein farnesyltransfe 96.7 0.025 1.1E-06 31.5 13.5 56 65-120 45-100 (306) 114 2hr2_A Hypothetical protein; N 96.6 0.029 1.2E-06 31.1 12.6 100 53-152 11-127 (159) 115 2kck_A TPR repeat; tetratricop 96.6 0.029 1.2E-06 31.1 10.9 88 57-148 10-98 (112) 116 1zu2_A Mitochondrial import re 96.5 0.0096 4E-07 34.0 7.5 26 177-202 106-131 (158) 117 2e2e_A Formate-dependent nitri 96.4 0.014 6E-07 33.0 7.7 94 59-158 50-146 (177) 118 1elr_A TPR2A-domain of HOP; HO 96.3 0.043 1.8E-06 30.0 14.8 94 59-154 10-106 (131) 119 1b89_A Protein (clathrin heavy 96.3 0.0032 1.4E-07 37.0 4.0 93 93-199 152-244 (449) 120 1ya0_A SMG-7 transcript varian 96.1 0.059 2.5E-06 29.1 15.2 112 91-209 122-233 (497) 121 1y8m_A FIS1; mitochondria, unk 96.1 0.06 2.5E-06 29.1 10.9 101 70-174 19-123 (144) 122 2ond_A Cleavage stimulation fa 96.0 0.061 2.6E-06 29.1 18.4 137 51-193 81-234 (308) 123 3ma5_A Tetratricopeptide repea 96.0 0.034 1.4E-06 30.6 8.2 63 89-155 7-69 (100) 124 3bee_A Putative YFRE protein; 96.0 0.021 9E-07 31.9 7.0 67 128-195 9-76 (93) 125 1b89_A Protein (clathrin heavy 95.9 0.071 3E-06 28.7 11.5 116 61-187 185-307 (449) 126 2h6f_A Protein farnesyltransfe 95.9 0.073 3.1E-06 28.6 15.4 50 68-119 147-196 (382) 127 2pqr_A Mitochondria fission 1 95.9 0.043 1.8E-06 30.0 8.1 64 129-192 41-107 (129) 128 2v5f_A Prolyl 4-hydroxylase su 95.7 0.018 7.7E-07 32.3 5.8 71 53-123 5-80 (104) 129 2ond_A Cleavage stimulation fa 95.5 0.1 4.3E-06 27.7 17.5 141 66-211 77-218 (308) 130 1klx_A Cysteine rich protein B 95.3 0.12 5.1E-06 27.2 11.4 111 68-193 10-128 (138) 131 3e4b_A ALGK; tetratricopeptide 95.2 0.13 5.5E-06 27.0 14.1 127 68-207 232-366 (452) 132 3bee_A Putative YFRE protein; 94.8 0.16 6.9E-06 26.4 8.2 66 57-124 12-78 (93) 133 2pqr_A Mitochondria fission 1 94.6 0.19 7.8E-06 26.1 9.6 92 78-173 28-122 (129) 134 1zbp_A Hypothetical protein VP 94.6 0.16 6.7E-06 26.5 7.6 80 96-180 4-83 (273) 135 3pdn_A SET and MYND domain-con 94.4 0.2 8.4E-06 25.9 15.6 92 99-190 296-398 (428) 136 1ouv_A Conserved hypothetical 94.2 0.22 9.4E-06 25.6 10.1 27 164-190 184-214 (273) 137 1ya0_A SMG-7 transcript varian 94.0 0.25 1.1E-05 25.3 9.5 78 90-172 153-230 (497) 138 2kog_A Vesicle-associated memb 92.5 0.12 5.2E-06 27.2 4.2 34 8-41 83-116 (119) 139 3hd7_A Vesicle-associated memb 88.4 0.58 2.4E-05 23.0 4.6 32 9-40 56-87 (91) 140 3bu8_A Telomeric repeat-bindin 78.7 2.5 0.00011 19.0 9.2 70 105-174 88-161 (235) 141 2ff4_A Probable regulatory pro 77.7 2.7 0.00011 18.9 14.4 116 92-208 118-257 (388) 142 3esl_A Checkpoint serine/threo 77.5 2.8 0.00012 18.8 12.5 93 103-196 51-149 (202) 143 3lvg_A Clathrin heavy chain 1; 76.5 0.11 4.8E-06 27.4 -2.9 19 167-185 459-477 (624) 144 1qsa_A Protein (soluble lytic 68.7 4.5 0.00019 17.5 15.1 25 165-189 322-346 (618) 145 2qsb_A UPF0147 protein TA0600; 65.6 5.2 0.00022 17.1 9.2 81 99-210 6-86 (89) 146 2qfc_A PLCR protein; TPR, HTH, 64.3 5.5 0.00023 17.0 20.4 149 62-210 124-287 (293) 147 3kez_A Putative sugar binding 59.7 6.6 0.00028 16.5 4.4 29 90-118 197-225 (461) 148 2crb_A Nuclear receptor bindin 58.9 6.8 0.00029 16.4 5.1 26 163-188 16-41 (97) 149 1rz2_A Conserved hypothetical 57.2 2.2 9.1E-05 19.5 0.4 42 19-60 11-52 (254) 150 3mkq_B Coatomer subunit alpha; 51.4 9.1 0.00038 15.6 9.9 46 63-115 15-60 (177) 151 2qzg_A Conserved uncharacteriz 50.9 9.2 0.00039 15.6 9.1 79 102-211 13-91 (94) 152 3jq1_A SUSD superfamily protei 50.0 9.5 0.0004 15.5 3.7 32 88-119 179-210 (481) 153 3mcx_A SUSD superfamily protei 49.9 9.5 0.0004 15.5 3.8 28 90-117 203-230 (477) 154 2j7a_C Cytochrome C quinol deh 49.8 3.9 0.00016 17.9 0.7 29 15-43 7-35 (159) 155 3myv_A SUSD superfamily protei 46.2 11 0.00046 15.1 4.7 29 161-189 189-217 (454) 156 2wvi_A Mitotic checkpoint seri 44.4 12 0.00049 15.0 7.4 93 102-197 36-131 (164) 157 2hi2_A Fimbrial protein; type 41.8 13 0.00054 14.7 3.6 27 24-50 7-33 (158) 158 3owq_A LIN1025 protein; struct 34.2 6.9 0.00029 16.4 0.0 25 9-33 8-32 (321) 159 3bqo_A Telomeric repeat-bindin 31.6 19 0.00078 13.7 11.9 67 106-172 95-162 (211) 160 1oqw_A Fimbrial protein; type 30.8 19 0.0008 13.6 5.8 27 24-50 7-33 (144) 161 3mkq_A Coatomer beta'-subunit; 25.9 23 0.00098 13.1 10.2 99 64-187 663-761 (814) 162 1wfd_A Hypothetical protein 15 21.5 28 0.0012 12.6 6.7 29 87-115 13-41 (93) 163 2ahm_E Replicase NSP8, replica 21.4 16 0.00068 14.1 0.0 14 106-119 21-34 (203) 164 3h9i_A Cation efflux system pr 20.4 17 0.00073 13.9 0.0 22 24-45 7-28 (407) No 1 >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2fi7_A Probab=99.03 E-value=1.5e-07 Score=63.88 Aligned_cols=141 Identities=21% Similarity=0.232 Sum_probs=76.1 Q ss_pred HHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 99999999-99984138766699999997312552069999999999995110057789999998731268957899999 Q gi|254780421|r 52 IVGENFAQ-ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAAT 130 (218) Q Consensus 52 ~as~~y~~-al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~ 130 (218) +..++|.. ++.....+++++|+..|++.++-.|+. .-+.+.+|.++...|++++|+..|+.+++..+.+. -+. T Consensus 35 ~~~day~~Lg~~y~~~g~~~~A~~~~~~al~~~p~~--~~a~~~Lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~ 108 (252) T 2ho1_A 35 EARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS--ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA----RVL 108 (252) T ss_dssp HHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC----HHH T ss_conf 899999999999998599999999999999839998--99999999999986999999999999987299770----788 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHH Q ss_conf 9999963026998999999753114-642356899999999999889989999999999835-5899899 Q gi|254780421|r 131 LQAASILVDTSSYEEISKILQKLSE-PSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSPFGI 198 (218) Q Consensus 131 l~la~~~~~~~~~d~a~~~l~~~~~-~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~ 198 (218) +.++.++...+++++++..+..... ...|....++..+|.++.+.|++++|++.|++++.. ++.|... T Consensus 109 ~~la~~~~~~~~~~eA~~~~~~al~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 178 (252) T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVA 178 (252) T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHH T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHH T ss_conf 9987889984548999999999998633751146541289998876999999999999998689989999 No 2 >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Probab=98.92 E-value=4.6e-08 Score=66.98 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=58.8 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC--CCCHHHHHHHHHHHH Q ss_conf 999999951100577899999987312689578999999999963026998999999753114--642356899999999 Q gi|254780421|r 93 MYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSE--PSNPMHQFANEILGI 170 (218) Q Consensus 93 l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~--~~~~~~~~a~ellg~ 170 (218) |..|..++..|++++|+..|+.++...+. ..+...|.+.++.++...+++++++..+..... +.+++...++..+|. T Consensus 6 Y~~a~~~~~~~~~~~A~~~~~~~i~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~a~~~la~ 84 (129) T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129) T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 99999999978999999999999988859-84689999999999997500999999999999878998068999999999 Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC Q ss_conf 9998899899999999998355899899999999999500 Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANII 210 (218) Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l~ 210 (218) ++..+|+.++|+..|+.++..-+.+ ..-..++..|..|. T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~yP~s-~~a~~a~~~L~~l~ 123 (129) T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGS-DAARVAQERLQSIR 123 (129) T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTS-HHHHHHHHHHHHHC T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHH T ss_conf 9998499999999999999888199-99999999999871 No 3 >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Probab=98.86 E-value=6.4e-08 Score=66.08 Aligned_cols=117 Identities=17% Similarity=0.192 Sum_probs=96.4 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 9999999998413876669999999731255-206999999999999511005778999999873126895789999999 Q gi|254780421|r 54 GENFAQALELFNSNKLDDARSSFEKILSQDN-KLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQ 132 (218) Q Consensus 54 s~~y~~al~~~~~~~~~~A~~~l~~l~~~~~-~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~ 132 (218) -+.|..++...+.+++++|+..|+.++...| +.+...|.+.+|.++...|++++|+..++.++.+.+.+ .....+.++ T Consensus 3 ~~~Y~~a~~~~~~~~~~~A~~~~~~~i~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~a~~~ 81 (129) T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH-DKAAGGLLK 81 (129) T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHH T ss_conf 9999999999997899999999999998885984689999999999997500999999999999878998-068999999 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCC--CCCHHHHHHHHHHHHH Q ss_conf 99963026998999999753114--6423568999999999 Q gi|254780421|r 133 AASILVDTSSYEEISKILQKLSE--PSNPMHQFANEILGIS 171 (218) Q Consensus 133 la~~~~~~~~~d~a~~~l~~~~~--~~~~~~~~a~ellg~~ 171 (218) ++.++...++++++...+..+.. |++++...+...+..+ T Consensus 82 la~~~~~~~~~~~A~~~~~~~~~~yP~s~~a~~a~~~L~~l 122 (129) T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 99999984999999999999998881999999999999987 No 4 >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Probab=98.85 E-value=1.1e-06 Score=58.35 Aligned_cols=131 Identities=17% Similarity=0.108 Sum_probs=84.0 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 99999984138766699999997312552069999999999995-11005778999999873126895789999999999 Q gi|254780421|r 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILV-AKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAAS 135 (218) Q Consensus 57 y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~-~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~ 135 (218) +.-+......++++.|...+++.++..++.. .+...++..+. ..|+.++|+..++..+..+..+... .+.+.++. T Consensus 46 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~eA~~~~~~al~~~~~~~~~--~~~~~lg~ 121 (225) T 2vq2_A 46 LVRAEIYQYLKVNDKAQESFRQALSIKPDSA--EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPY--IANLNKGI 121 (225) T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHH--HHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH T ss_conf 9999999987899999999999986298621--2356478999998175076656689999722363046--88752688 Q ss_pred HHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC Q ss_conf 630269989999997531146423568999999999998899899999999998355 Q gi|254780421|r 136 ILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDN 192 (218) Q Consensus 136 ~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~ 192 (218) ++...+++++|+..+.....-+ |-...+...+|.++...|++++|...|+++.... T Consensus 122 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225) T 2vq2_A 122 CSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225) T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC T ss_conf 8888589999999999999868-9989999999999999499999999999998428 No 5 >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Probab=98.83 E-value=1.6e-06 Score=57.47 Aligned_cols=136 Identities=17% Similarity=0.163 Sum_probs=85.5 Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 99841387666999999973125520699999999999951100577899999987312689578999999999963026 Q gi|254780421|r 61 LELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDT 140 (218) Q Consensus 61 l~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~ 140 (218) ......++.++|+..+++.++..++. +.+.+.++.++...|++++|+..++......+... ......+.++... T Consensus 245 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 318 (388) T 1w3b_A 245 CVYYEQGLIDLAIDTYRRAIELQPHF--PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA----DSLNNLANIKREQ 318 (388) T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSSC--HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTT T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHC T ss_conf 99998799999999999999729998--99999999999984779999998887763286036----8877899999987 Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCCHHHHHHHH Q ss_conf 99899999975311464235689999999999988998999999999983-5589989999999 Q gi|254780421|r 141 SSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK-DNNSPFGISTRSQ 203 (218) Q Consensus 141 ~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~-~~~~p~~~r~ra~ 203 (218) +++++|+..+.....- .|-...++..+|.++...|++++|++.|++++. +++.|.....+.+ T Consensus 319 ~~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~ 381 (388) T 1w3b_A 319 GNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388) T ss_dssp TCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 8999999999999986-98989999999999998499999999999999739998999999999 No 6 >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2fi7_A Probab=98.82 E-value=1.4e-06 Score=57.76 Aligned_cols=135 Identities=13% Similarity=0.061 Sum_probs=102.7 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 99999984138766699999997312552069999999999995110057789999998731268957899999999996 Q gi|254780421|r 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASI 136 (218) Q Consensus 57 y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~ 136 (218) +.-+......+++++|+..+++.++..|.. ..+.+.++.++...|++++|+..+..++.....|. ...+.+.++.+ T Consensus 75 ~~Lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~eA~~~~~~al~~~~~p~--~~~~~~~lg~~ 150 (252) T 2ho1_A 75 AALAVVFQTEMEPKLADEEYRKALASDSRN--ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE--RSRVFENLGLV 150 (252) T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT--HHHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHH T ss_conf 999999998699999999999998729977--07889987889984548999999999998633751--14654128999 Q ss_pred HHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH Q ss_conf 302699899999975311464235689999999999988998999999999983558998 Q gi|254780421|r 137 LVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPF 196 (218) Q Consensus 137 ~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~ 196 (218) +...+++++|+..+.....-+ |-...+...+|.++.+.|++++|+..|+++........ T Consensus 151 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 209 (252) T 2ho1_A 151 SLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNA 209 (252) T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCH T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH T ss_conf 887699999999999999868-99899999999999986999999999999985587999 No 7 >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCNACYLATION; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2vsn_A* Probab=98.81 E-value=2.5e-07 Score=62.36 Aligned_cols=131 Identities=12% Similarity=0.066 Sum_probs=102.7 Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 38766699999997312552069999999999995110057789999998731268957899999999996302699899 Q gi|254780421|r 66 SNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEE 145 (218) Q Consensus 66 ~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~ 145 (218) +++..+|+..|++.++..|+. ..+.+.+|.++...|++++|+..|+.+++-.+.+. -+...++.++...+++++ T Consensus 2 ~~D~~~Al~~l~~al~~~P~~--~~a~~~Lg~~~~~~g~~~~A~~~~~~Al~l~P~~~----~a~~~Lg~~~~~~g~~~~ 75 (568) T 2vsy_A 2 TADGPRELLQLRAAVRHRPQD--FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP----EAVARLGRVRWTQQRHAE 75 (568) T ss_dssp -------------------CC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH----HHHHHHHHHHHHTTCHHH T ss_pred CCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHH T ss_conf 998899999999999968999--99999999999987899999999999998298999----999999999998599999 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHH Q ss_conf 9999753114642356899999999999889989999999999835589-989999999 Q gi|254780421|r 146 ISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNS-PFGISTRSQ 203 (218) Q Consensus 146 a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~-p~~~r~ra~ 203 (218) |+..+.....- .|....++..+|.++...|++++|+..|++++...+. |.....++. T Consensus 76 A~~~~~~al~l-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~~~~~l~~ 133 (568) T 2vsy_A 76 AAVLLQQASDA-APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLN 133 (568) T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH T ss_pred HHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH T ss_conf 99999999971-99999999999999998297123357777652238862377888887 No 8 >2r5s_A Uncharacterized protein VP0806; APC090868.1, structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus rimd 2210633} Probab=98.77 E-value=1.1e-07 Score=64.51 Aligned_cols=154 Identities=14% Similarity=0.059 Sum_probs=111.5 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 99999999841387666999999973125520699999999999951100577899999987312689578999999999 Q gi|254780421|r 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAA 134 (218) Q Consensus 55 ~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la 134 (218) ..+..+-...+.|++++|+..++++....|.. .-+.+.+|.+++..|++++|...++.+...... .. .+.+..+ T Consensus 8 ~ll~~A~~l~~~g~~~eA~~~~~~~l~~~P~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~---~~~~~~~ 81 (176) T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSR--GDVKLAKADCLLETKQFELAQELLATIPLEYQD-NS---YKSLIAK 81 (176) T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS--HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCC-HH---HHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC-HH---HHHHHHH T ss_conf 99999999998699999999999999878899--999999999999829831337999998761741-02---4358999 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCC-CHHHHHHHHHHHHHHCCC Q ss_conf 96302699899999975311464235689999999999988998999999999983-5589-989999999999950034 Q gi|254780421|r 135 SILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK-DNNS-PFGISTRSQMILANIIAS 212 (218) Q Consensus 135 ~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~-~~~~-p~~~r~ra~~~l~~l~~~ 212 (218) ......++.++++..+...... .|....+...+|.++...|++++|.+.|.+++. +++. ....+...-..+..++-. T Consensus 82 ~~~~~~~~~~~a~~~~~~~~~~-~p~~~~~~~~la~~~~~~~~~~~A~~~l~~~l~~d~~~~~~~~~~~l~~~~~~lg~~ 160 (176) T 2r5s_A 82 LELHQQAAESPELKRLEQELAA-NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176) T ss_dssp HHHHHHHTSCHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS T ss_pred HHHHHHHCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 9998711319999999987611-864089999899998872329999999999998788864799999999999985997 Q ss_pred HHH Q ss_conf 032 Q gi|254780421|r 213 DQR 215 (218) Q Consensus 213 ~~~ 215 (218) +++ T Consensus 161 d~a 163 (176) T 2r5s_A 161 NAI 163 (176) T ss_dssp CHH T ss_pred CHH T ss_conf 599 No 9 >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, unfolded protein response; 2.51A {Mus musculus} Probab=98.77 E-value=4e-06 Score=54.97 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=90.6 Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCC---HHH-------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 841387666999999973125520---699-------9999999999511005778999999873126895789999999 Q gi|254780421|r 63 LFNSNKLDDARSSFEKILSQDNKL---YNP-------LSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQ 132 (218) Q Consensus 63 ~~~~~~~~~A~~~l~~l~~~~~~~---ya~-------lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~ 132 (218) ....++.+.|+..+++.....++. +.. ...+..+..++..|++.+|+..+..++...+........+... T Consensus 198 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 277 (359) T 3ieg_A 198 YYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKER 277 (359) T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC T ss_conf 99854499999999999972989899999888899887667654457653158888887889998398631011100001 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 9996302699899999975311464235689999999999988998999999999983558998999999 Q gi|254780421|r 133 AASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRS 202 (218) Q Consensus 133 la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra 202 (218) ++.++...+++++|+..+.....- .|-...++..+|.++...|++++|++.|++++...+....++... T Consensus 278 l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 346 (359) T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL 346 (359) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH T ss_conf 110000222599999999999984-999899999999999985999999999999987398989999999 No 10 >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, unfolded protein response; 2.51A {Mus musculus} Probab=98.70 E-value=7.7e-06 Score=53.21 Aligned_cols=146 Identities=12% Similarity=0.054 Sum_probs=98.9 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHH-HHH-------HH Q ss_conf 9999984138766699999997312552069999999999995110057789999998731268957-899-------99 Q gi|254780421|r 58 AQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLA-VRY-------AA 129 (218) Q Consensus 58 ~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~-~~~-------lA 129 (218) ..+......++++.|+..++......+.. ..+.+.++.++...++.++|+..+..++...+.... +.. .. T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 236 (359) T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDN--TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 236 (359) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH T ss_conf 99999987488402467889999973124--7888999999998544999999999999729898999998888998876 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHCC---CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHH Q ss_conf 99999963026998999999753114---642356899999999999889989999999999835-58998999999999 Q gi|254780421|r 130 TLQAASILVDTSSYEEISKILQKLSE---PSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSPFGISTRSQMI 205 (218) Q Consensus 130 ~l~la~~~~~~~~~d~a~~~l~~~~~---~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~r~ra~~~ 205 (218) ....+..+...+++++++..+..... ...++.......+|.++.+.|++++|.+.|++++.. ++.+..+..++... T Consensus 237 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 316 (359) T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 67654457653158888887889998398631011100001110000222599999999999984999899999999999 No 11 >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Probab=98.70 E-value=3.2e-06 Score=55.57 Aligned_cols=127 Identities=20% Similarity=0.162 Sum_probs=66.1 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH Q ss_conf 99999841387666999999973125520699999999999951100577899999987312689578999999999963 Q gi|254780421|r 58 AQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASIL 137 (218) Q Consensus 58 ~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~ 137 (218) .-+......+++++|+..+++.+...|+. ..+.+.++.++...|++++|+..|+..++-.+... .+...++.++ T Consensus 13 ~La~~y~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~ 86 (225) T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSDPKN--ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA----EINNNYGWFL 86 (225) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH T ss_conf 99999998699999999999999868998--99999999999987899999999999986298621----2356478999 Q ss_pred H-CCCCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 0-2699899999975311-464235689999999999988998999999999983 Q gi|254780421|r 138 V-DTSSYEEISKILQKLS-EPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218) Q Consensus 138 ~-~~~~~d~a~~~l~~~~-~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218) . ..+++++++..+.... .+..|....+...+|.++...|++++|++.|++++. T Consensus 87 ~~~~~~~~eA~~~~~~al~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 141 (225) T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225) T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH T ss_pred HHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9981750766566899997223630468875268888885899999999999998 No 12 >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Probab=98.70 E-value=5.7e-06 Score=54.03 Aligned_cols=118 Identities=9% Similarity=0.018 Sum_probs=92.0 Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 38766699999997312552069999999999995110057789999998731268957899999999996302699899 Q gi|254780421|r 66 SNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEE 145 (218) Q Consensus 66 ~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~ 145 (218) .+++++|+..+++.+...|+. ..+.+.+|.++...|++++|+..++..+...+.++ -+...++.++...+++++ T Consensus 151 ~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~e 224 (327) T 3cv0_A 151 PNEYRECRTLLHAALEMNPND--AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA----QLWNKLGATLANGNRPQE 224 (327) T ss_dssp HHHHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHH T ss_pred CCCHHHHHHHHHHHHHHCCCC--HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHH T ss_conf 778999999999999749862--03444012210255449999999999886187879----999999999998478999 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 999975311464235689999999999988998999999999983 Q gi|254780421|r 146 ISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218) Q Consensus 146 a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218) |+..+.....- .|....++..+|.++.+.|++++|++.|++++. T Consensus 225 A~~~~~~al~l-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ai~ 268 (327) T 3cv0_A 225 ALDAYNRALDI-NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327) T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99999999985-989899999999999984999999999999986 No 13 >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Probab=98.68 E-value=1.5e-06 Score=57.51 Aligned_cols=131 Identities=19% Similarity=0.207 Sum_probs=107.8 Q ss_pred HHHHH-HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 99999-99984138766699999997312552069999999999995110057789999998731268957899999999 Q gi|254780421|r 55 ENFAQ-ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQA 133 (218) Q Consensus 55 ~~y~~-al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~l 133 (218) +.|.. +......+++++|+..+++.+...+.... +.+.++.++...++.+.|...++.++...+.+. .+.+.+ T Consensus 2 ~ay~~lg~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~p~~~----~~~~~~ 75 (136) T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE--AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA----EAWYNL 75 (136) T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH----HHHHHH T ss_conf 88999999999968999999999999873954299--999999999980761554689999998598772----899988 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC Q ss_conf 99630269989999997531146423568999999999998899899999999998355 Q gi|254780421|r 134 ASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDN 192 (218) Q Consensus 134 a~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~ 192 (218) |.+++..+++++|+..+.....- .|........+|.++...|++++|+..|+++++-. T Consensus 76 a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~ 133 (136) T 2fo7_A 76 GNAYYKQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136) T ss_dssp HHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS T ss_pred HHHHHHCCCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC T ss_conf 18999848899999999999871-98619999999999999689999999999999878 No 14 >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Probab=98.68 E-value=1.2e-06 Score=58.14 Aligned_cols=135 Identities=13% Similarity=0.062 Sum_probs=103.7 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 99999999999841387666999999973125520699999999999951100577899999987312689578999999 Q gi|254780421|r 52 IVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATL 131 (218) Q Consensus 52 ~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l 131 (218) +.-..|..++...+.++++.|+..|.++.+. . .-+.+.++.++...|++++|+..|+..++-.+.. ..+.+ T Consensus 5 e~~~l~~~g~~~~~~~d~~~Al~~f~~i~~~---~--~~~~~nlG~~y~~~~~~~~A~~~f~~Ai~l~p~~----~~a~~ 75 (213) T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP---H--SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL----AVAYF 75 (213) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC---C--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC---C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHH----HHHHH T ss_conf 9999999999999858999999998656898---8--9999999999998699999999999999866045----78887 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCC--CCC-------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC Q ss_conf 999963026998999999753114--642-------------3568999999999998899899999999998355899 Q gi|254780421|r 132 QAASILVDTSSYEEISKILQKLSE--PSN-------------PMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSP 195 (218) Q Consensus 132 ~la~~~~~~~~~d~a~~~l~~~~~--~~~-------------~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p 195 (218) .++.++...+++++|++.+..... +.. ++...++..+|.++...|++++|.+.|++++.-...| T Consensus 76 ~~g~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~l~~Al~~~~~~ 154 (213) T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC T ss_conf 7999999854589999999999985836725789986432365379999999999999699999999999998379982 No 15 >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, cytoplasm, plasmid, virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A Probab=98.67 E-value=7.2e-07 Score=59.57 Aligned_cols=116 Identities=16% Similarity=0.076 Sum_probs=94.3 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99999999999511005778999999873126895789999999999630269989999997531146423568999999 Q gi|254780421|r 89 PLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEIL 168 (218) Q Consensus 89 ~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ell 168 (218) .-+.+.+|..++..|++++|+..|+.++...+... -+.+.++.++...+++++|+..+.....- .|....+...+ T Consensus 36 ~~~l~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~~ 110 (151) T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV----DYIMGLAAIYQIKEQFQQAADLYAVAFAL-GKNDYTPVFHT 110 (151) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-SSSCCHHHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHH T ss_conf 99999999999986999999999999998789999----99999999999859868999999999985-55786999877 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC Q ss_conf 999998899899999999998355899899999999999500 Q gi|254780421|r 169 GISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANII 210 (218) Q Consensus 169 g~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l~ 210 (218) |.++...|++++|++.|++++.. .+.+.++.|++..|+.|. T Consensus 111 g~~~~~~g~~~~A~~~~~~ai~~-~~~~~~~~~a~~~L~~l~ 151 (151) T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH-SNDEKLKIKAQSYLDAIQ 151 (151) T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHC T ss_pred HHHHHHCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHC T ss_conf 79999878999999999999863-998499999999998619 No 16 >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Probab=98.66 E-value=6.2e-06 Score=53.79 Aligned_cols=136 Identities=14% Similarity=0.080 Sum_probs=96.1 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC Q ss_conf 99984138766699999997312552069999999999995110057789999998731268957899999999996302 Q gi|254780421|r 60 ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVD 139 (218) Q Consensus 60 al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~ 139 (218) +......+++++|+..+++.....+.. ....+.++.++...|++++|+..|..+++..+... -+.+.++.++.. T Consensus 210 ~~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~ 283 (388) T 1w3b_A 210 GNVLKEARIFDRAVAAYLRALSLSPNH--AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP----DAYCNLANALKE 283 (388) T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH----HHHHHHHHHHHH T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHH T ss_conf 999885687999999999998849752--79999999999987999999999999997299989----999999999998 Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHH Q ss_conf 69989999997531146423568999999999998899899999999998355-8998999999 Q gi|254780421|r 140 TSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDN-NSPFGISTRS 202 (218) Q Consensus 140 ~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~-~~p~~~r~ra 202 (218) .+++++|+..+...... .|........+|.++...|++++|.+.|++++... +.+.....++ T Consensus 284 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 346 (388) T 1w3b_A 284 KGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346 (388) T ss_dssp HSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 47799999988877632-8603688778999999878999999999999986989899999999 No 17 >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 2c0m_A 2c0l_A Probab=98.66 E-value=8.5e-06 Score=52.93 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=86.6 Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 76669999999731255206999999999999511005778999999873126895789999999999630269989999 Q gi|254780421|r 68 KLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEIS 147 (218) Q Consensus 68 ~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~ 147 (218) ...++...+.+.+...++...+.+.+.++.++...|++++|+..|..++...+.+. .+...+|.++...+++++|+ T Consensus 196 ~~~ea~~~~~~a~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~ 271 (368) T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY----LLWNKLGATLANGNQSEEAV 271 (368) T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHH T ss_conf 39999999999998485420147777799999882447779998999998699979----99999999999878999999 Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf 99753114642356899999999999889989999999999835 Q gi|254780421|r 148 KILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD 191 (218) Q Consensus 148 ~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~ 191 (218) ..+.....- .|....++..+|.++.+.|++++|.+.|++++.- T Consensus 272 ~~~~~al~l-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 314 (368) T 1fch_A 272 AAYRRALEL-QPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368) T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC T ss_conf 999999974-9998999999999999869999999999999871 No 18 >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Probab=98.66 E-value=1.8e-06 Score=57.13 Aligned_cols=148 Identities=14% Similarity=0.059 Sum_probs=77.8 Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC-----CHHHHHHHHHHHHHHHH Q ss_conf 4138766699999997312552069999999999995110057789999998731268-----95789999999999630 Q gi|254780421|r 64 FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLA-----PLAVRYAATLQAASILV 138 (218) Q Consensus 64 ~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~-----~~~~~~lA~l~la~~~~ 138 (218) ...++.+.|...+++.....++. ..+...++.++...|++++|+..+...++.... +......+...++.++. T Consensus 170 ~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 247 (330) T 3hym_B 170 GLTNNSKLAERFFSQALSIAPED--PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330) T ss_dssp HHTTCHHHHHHHHHHHHTTCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH T ss_pred HHHCCHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH T ss_conf 98177166799999998618751--0222346777774013999999999999970752101111236777653213577 Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHH Q ss_conf 2699899999975311464235689999999999988998999999999983558998999999999995003403 Q gi|254780421|r 139 DTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANIIASDQ 214 (218) Q Consensus 139 ~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l~~~~~ 214 (218) ..+++++|+..+.....- .|..+.++..+|.++...|++++|++.|++++.-.+.++.........+...++..+ T Consensus 248 ~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~a~~~l~~~l~~~~~~~e 322 (330) T 3hym_B 248 KLKKYAEALDYHRQALVL-IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330) T ss_dssp HTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-- T ss_pred HHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHH T ss_conf 634499999999999986-989899999999999985999999999999986599999999999999984798388 No 19 >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Probab=98.65 E-value=8.8e-07 Score=59.03 Aligned_cols=125 Identities=13% Similarity=0.102 Sum_probs=87.4 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 99998413876669999999731255206999999999999511005778999999873126895789999999999630 Q gi|254780421|r 59 QALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILV 138 (218) Q Consensus 59 ~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~ 138 (218) -+......+++++|+..+++.++..|+. +.+.+.+|.++...|++++|+..|+..+.-.+.+. .+.+.++.++. T Consensus 276 l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~l~~~~~ 349 (514) T 2gw1_A 276 MALIMADRNDSTEYYNYFDKALKLDSNN--SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI----FPYIQLACLAY 349 (514) T ss_dssp HHHHHHTSSCCTTGGGHHHHHHTTCTTC--THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS----HHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCCH----HHHHHHCCCCC T ss_conf 5334676566888888899898709854--04676521100011128999999999998498856----67663031100 Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 2699899999975311464235689999999999988998999999999983 Q gi|254780421|r 139 DTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218) Q Consensus 139 ~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218) ..+++++|+..+...... .|..+.+...+|.++..+|++++|++.|++++. T Consensus 350 ~~~~~~~A~~~~~~~~~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 400 (514) T 2gw1_A 350 RENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514) T ss_dssp TTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHH T ss_conf 001479999999999986-998468887577887875059999999999987 No 20 >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric regulation, phosphoprotein, TPR repeat; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A Probab=98.65 E-value=1.5e-06 Score=57.67 Aligned_cols=119 Identities=14% Similarity=0.128 Sum_probs=54.0 Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH Q ss_conf 41387666999999973125520699999999999951100577899999987312689578999999999963026998 Q gi|254780421|r 64 FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSY 143 (218) Q Consensus 64 ~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~ 143 (218) .+.++.++|+..+++.+...+.. ..+.+.+|.++...|++++|+..|+.++...+... .+.+.++.++...+++ T Consensus 287 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~ 360 (537) T 3fp2_A 287 ADKENSQEFFKFFQKAVDLNPEY--PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV----YPYIQLACLLYKQGKF 360 (537) T ss_dssp CCSSCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS----HHHHHHHHHHHHTTCH T ss_pred HHHCCHHHHHHHHHHHHHHCCCC--HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHH T ss_conf 31000023369999998849740--14554012105655222355788999999764010----3334555567752359 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 9999997531146423568999999999998899899999999998 Q gi|254780421|r 144 EEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELA 189 (218) Q Consensus 144 d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~ 189 (218) ++++..+....... |..+.++..+|.++...|++++|.+.|++++ T Consensus 361 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 405 (537) T 3fp2_A 361 TESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537) T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999999999868-9999999999999997799999999999998 No 21 >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Probab=98.62 E-value=6.5e-07 Score=59.85 Aligned_cols=138 Identities=13% Similarity=0.019 Sum_probs=102.7 Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 66699999997312552069999999999995110057789999998731268957899999999996302699899999 Q gi|254780421|r 69 LDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISK 148 (218) Q Consensus 69 ~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~ 148 (218) ...+...|..+.+-.+.. .-+.+.+|..++..|++++|+..|+.++...+.++ -+.+.++.++...+++++|+. T Consensus 3 ~~~~~~~~~~~~~i~~~~--~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~lg~~~~~~~~~~~Ai~ 76 (148) T 2vgx_A 3 LGSGGGTIAMLNEISSDT--LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS----RFFLGLGACRQAMGQYDLAIH 76 (148) T ss_dssp ---CCCSHHHHTTCCHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHH T ss_pred HHHHHHHHHHHHHCCHHH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHH T ss_conf 778999999998689564--99999999999986999999999999998595999----999999999998698578999 Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCC--HHHHHHHHHHHHHHCCCH Q ss_conf 9753114642356899999999999889989999999999835-5899--899999999999500340 Q gi|254780421|r 149 ILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSP--FGISTRSQMILANIIASD 213 (218) Q Consensus 149 ~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p--~~~r~ra~~~l~~l~~~~ 213 (218) .+.....-+ |....++..+|.++...|++++|.+.|++++.. ++.| ..++.|+...+..+.-.- T Consensus 77 ~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~i~~~k 143 (148) T 2vgx_A 77 SYSYGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKLKK 143 (148) T ss_dssp HHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC---- T ss_pred HHHHHHCCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 999756248-6539999999999985578999999999998618997789999999999999981377 No 22 >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 2c0m_A 2c0l_A Probab=98.60 E-value=8.1e-07 Score=59.25 Aligned_cols=73 Identities=7% Similarity=0.021 Sum_probs=43.5 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCCHHHHHHH Q ss_conf 99999996302699899999975311464235689999999999988998999999999983-558998999999 Q gi|254780421|r 129 ATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK-DNNSPFGISTRS 202 (218) Q Consensus 129 A~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~-~~~~p~~~r~ra 202 (218) +...++.++...+++++|+..+...... .|-.+.++..+|.++...|++++|++.|++++. +++.+.....++ T Consensus 219 ~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg 292 (368) T 1fch_A 219 VQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292 (368) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 7777999998824477799989999986-9997999999999999878999999999999974999899999999 No 23 >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus HB27} Probab=98.60 E-value=1.1e-05 Score=52.17 Aligned_cols=139 Identities=12% Similarity=0.117 Sum_probs=86.3 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHH------HHHHHHCCHHHHHHHHHHHHHHHCCCCHHHH Q ss_conf 9999999841387666999999973125520---699999999------9999511005778999999873126895789 Q gi|254780421|r 56 NFAQALELFNSNKLDDARSSFEKILSQDNKL---YNPLSNMYI------ASILVAKGDTKNAAEIFLKVANDDLAPLAVR 126 (218) Q Consensus 56 ~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~---ya~lA~l~l------A~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~ 126 (218) .+.-+......+++++|+..+++.++..|.. +..++.... .......|++++|+..++..++-.+... T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~--- 118 (217) T 2pl2_A 42 LYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA--- 118 (217) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH--- T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH--- T ss_conf 99999999986999999999998760385047887502222100123478899871539999999988874499869--- Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 99999999963026998999999753114642356899999999999889989999999999835589989999 Q gi|254780421|r 127 YAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGIST 200 (218) Q Consensus 127 ~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ 200 (218) -+.+.++.++...+++++++..+.......+ .......+|.++...|++++|++.|++++...+....... T Consensus 119 -~~~~~lg~~~~~~~~~~~a~~~~~~al~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 189 (217) T 2pl2_A 119 -PLHLQRGLVYALLGERDKAEASLKQALALED--TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRV 189 (217) T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH T ss_conf -9999999999996899999999999981799--8469999858888647999999999999985999899999 No 24 >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Probab=98.60 E-value=1.3e-06 Score=57.95 Aligned_cols=137 Identities=10% Similarity=0.043 Sum_probs=82.6 Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCC---H----------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHH Q ss_conf 99841387666999999973125520---6----------9999999999995110057789999998731268957899 Q gi|254780421|r 61 LELFNSNKLDDARSSFEKILSQDNKL---Y----------NPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRY 127 (218) Q Consensus 61 l~~~~~~~~~~A~~~l~~l~~~~~~~---y----------a~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~ 127 (218) ......++.++|+..+++.....+.. . ........+..+...|++++|+..++.++...+.+. T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---- 172 (327) T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA---- 172 (327) T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCH---- T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---- T ss_conf 9998717415699987644402730788876542456666569999999999987789999999999997498620---- Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHH Q ss_conf 9999999963026998999999753114642356899999999999889989999999999835-58998999999 Q gi|254780421|r 128 AATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSPFGISTRS 202 (218) Q Consensus 128 lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~r~ra 202 (218) .+.+.++.++...+++++|+..+.....- .|..+.++..+|.++...|++++|++.|++++.. ++.+.....++ T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~l~p~~~~~~~~lg 247 (327) T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVEL-RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247 (327) T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 34440122102554499999999998861-8787999999999999847899999999999985989899999999 No 25 >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Probab=98.59 E-value=1e-05 Score=52.39 Aligned_cols=122 Identities=18% Similarity=0.158 Sum_probs=53.0 Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC Q ss_conf 84138766699999997312552069999999999995110057789999998731268957899999999996302699 Q gi|254780421|r 63 LFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSS 142 (218) Q Consensus 63 ~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~ 142 (218) ....++.+.|...+++.....+........+.........+++++|+..+..++...+.+. .+...++.+++..++ T Consensus 140 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~la~~~~~~g~ 215 (291) T 3mkr_A 140 LLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL----LLLNGQAACHMAQGR 215 (291) T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHHHTTC T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHCCC T ss_conf 9986998889999999998642577999998357775054239999998888887501469----999889999998198 Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 89999997531146423568999999999998899899999999998 Q gi|254780421|r 143 YEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELA 189 (218) Q Consensus 143 ~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~ 189 (218) +++|+..+...... .|..+.++..+|.++...|+..+|.+.|.+.+ T Consensus 216 ~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~ea~~~~~~~l 261 (291) T 3mkr_A 216 WEAAEGVLQEALDK-DSGHPETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291) T ss_dssp HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 89999999999986-89999999999999998699199999999999 No 26 >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric regulation, phosphoprotein, TPR repeat; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A Probab=98.58 E-value=1.3e-05 Score=51.70 Aligned_cols=125 Identities=21% Similarity=0.233 Sum_probs=61.9 Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH Q ss_conf 41387666999999973125520699999999999951100577899999987312689578999999999963026998 Q gi|254780421|r 64 FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSY 143 (218) Q Consensus 64 ~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~ 143 (218) ...+++++|+..+++.+...|+. ..+.+.+|.++...|++++|+..++.++...+..+ -+...++.++...+++ T Consensus 321 ~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~ 394 (537) T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNPEN--VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP----EVPTFFAEILTDRGDF 394 (537) T ss_dssp HHTTCHHHHHHHHHHHHHHCTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHHHHHHHHHHTTCH T ss_pred HHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCH T ss_conf 65522235578899999976401--03334555567752359999999999998689999----9999999999977999 Q ss_pred HH--------------------------------------------------HHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 99--------------------------------------------------9999753114642356899999999999 Q gi|254780421|r 144 EE--------------------------------------------------ISKILQKLSEPSNPMHQFANEILGISAL 173 (218) Q Consensus 144 d~--------------------------------------------------a~~~l~~~~~~~~~~~~~a~ellg~~~~ 173 (218) ++ |+..+.....- .|....++..+|.++. T Consensus 395 ~~A~~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~kal~l-~p~~~~a~~~lg~~~~ 473 (537) T 3fp2_A 395 DTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQAKIGLAQLKL 473 (537) T ss_dssp HHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH T ss_conf 999999999986399999999999999986578899876557988765899999999999985-9998999999999999 Q ss_pred HCCCHHHHHHHHHHHHHCCCCC Q ss_conf 8899899999999998355899 Q gi|254780421|r 174 KFGKVQKAKTIFEELAKDNNSP 195 (218) Q Consensus 174 ~~Gd~~~A~~~y~~i~~~~~~p 195 (218) ++|++++|++.|++++.-.+.. T Consensus 474 ~~g~~~~A~~~~~~al~l~~~~ 495 (537) T 3fp2_A 474 QMEKIDEAIELFEDSAILARTM 495 (537) T ss_dssp HTTCHHHHHHHHHHHHHHC--C T ss_pred HCCCHHHHHHHHHHHHHCCCCC T ss_conf 8599999999999997319997 No 27 >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics consortium, SGC, coiled coil, microtubule, motor protein; 2.70A {Homo sapiens} PDB: 3ceq_A Probab=98.58 E-value=1.2e-05 Score=51.97 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=76.2 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-------CCCC Q ss_conf 9999999999951100577899999987312----6895789999999999630269989999997531-------1464 Q gi|254780421|r 89 PLSNMYIASILVAKGDTKNAAEIFLKVANDD----LAPLAVRYAATLQAASILVDTSSYEEISKILQKL-------SEPS 157 (218) Q Consensus 89 ~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~----~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~-------~~~~ 157 (218) ..+...++.++...|++++|+..++.+++-. ..+.+....+...++.++...+++++|+..+... ..++ T Consensus 85 a~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~~~~~~~ 164 (283) T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283) T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999999986887889987888999999861668868999999871765503755889998888999999862899 Q ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 235689999999999988998999999999983 Q gi|254780421|r 158 NPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218) Q Consensus 158 ~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218) .|....+...+|.++.+.|++++|.+.|++++. T Consensus 165 ~~~~a~~~~~Lg~~~~~~g~~~~A~~~~~~al~ 197 (283) T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283) T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 989999999999999876879999999999999 No 28 >2e2e_A Formate-dependent nitrite reductase complex NRFG subunit; TPR, cytochrome C biogenesis, O157:H7 EDL933, lyase; 2.05A {Escherichia coli} Probab=98.56 E-value=1.6e-06 Score=57.49 Aligned_cols=125 Identities=8% Similarity=0.043 Sum_probs=90.0 Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--H-CC Q ss_conf 41387666999999973125520699999999999951100577899999987312689578999999999963--0-26 Q gi|254780421|r 64 FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASIL--V-DT 140 (218) Q Consensus 64 ~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~--~-~~ 140 (218) .+.++.+.++..++..+...|+.. -+.+.+|.+++..|++++|+..|+.++...+.++.. .+..+.++ . .. T Consensus 21 ~~~~~~~~ai~~l~~~l~~~P~~~--~~~~~Lg~~y~~~g~~~~A~~~~~~al~l~p~~~~~----~~~~a~~l~~~~~~ 94 (177) T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNS--EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL----YAALATVLYYQASQ 94 (177) T ss_dssp C-----CCCCHHHHHHHHHCCSCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHH----HHHHHHHHHHHTTT T ss_pred HCCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHCCC T ss_conf 857999999999999999889999--999999999999699999999999999858632799----98789999986387 Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC Q ss_conf 9989999997531146423568999999999998899899999999998355899 Q gi|254780421|r 141 SSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSP 195 (218) Q Consensus 141 ~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p 195 (218) ...+++...+...... .|....++..+|.++...|++++|...|++++...+.. T Consensus 95 ~~~~ea~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~ 148 (177) T 2e2e_A 95 HMTAQTRAMIDKALAL-DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177) T ss_dssp CCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT T ss_pred CCCHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC T ss_conf 6312468999899871-99989999999999999789999999999998659996 No 29 >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Probab=98.54 E-value=6.2e-06 Score=53.77 Aligned_cols=136 Identities=13% Similarity=0.012 Sum_probs=100.1 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHH--HHHHH- Q ss_conf 999999999841387666999999973125520699999999999951100577899999987312689578--99999- Q gi|254780421|r 54 GENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAV--RYAAT- 130 (218) Q Consensus 54 s~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~--~~lA~- 130 (218) ...+..+......|++++|+..+...++..+......+...++.++...|++++|...|+..+.-.+..... ..+.. T Consensus 101 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 180 (310) T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNL 180 (310) T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 99999999999848738899999999863876322999999999999859999999999999861903422014999999 Q ss_pred -HHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf -9999963026998999999753114642356899999999999889989999999999835 Q gi|254780421|r 131 -LQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD 191 (218) Q Consensus 131 -l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~ 191 (218) ...+.+....+++++|+..+..+....+. ..++..+|.++..+|++++|.+.|++++.. T Consensus 181 ~~~~~~~~~~~~~~~~A~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 240 (310) T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQTFPT--WKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310) T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTTSCS--HHHHHHHHHHHHHHTCHHHHHHHHHHHHSH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 999999998700499999999998864997--999999999999869989999999999862 No 30 >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Probab=98.53 E-value=1.9e-06 Score=56.92 Aligned_cols=119 Identities=13% Similarity=0.004 Sum_probs=95.1 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 99999999999951100577899999987312689578999999999963026998999999753114642356899999 Q gi|254780421|r 88 NPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEI 167 (218) Q Consensus 88 a~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~el 167 (218) ..-+.+.+|..++..|++++|+..|..++...+.+. .+.+.++.++...+++++|+..+.....- .|....+... T Consensus 17 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~ 91 (142) T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA----RYFLGLGACRQSLGLYEQALQSYSYGALM-DINEPRFPFH 91 (142) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHH T ss_conf 599999999999986999999999999998399879----99999739999948989999999999874-4388999997 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCC-C--CCHHHHHHHHHHHHHHCC Q ss_conf 9999998899899999999998355-8--998999999999995003 Q gi|254780421|r 168 LGISALKFGKVQKAKTIFEELAKDN-N--SPFGISTRSQMILANIIA 211 (218) Q Consensus 168 lg~~~~~~Gd~~~A~~~y~~i~~~~-~--~p~~~r~ra~~~l~~l~~ 211 (218) +|.++...|++++|.+.|++++... + .-..++.+++..+..|.. T Consensus 92 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l~~l~~ 138 (142) T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTA 138 (142) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 67999885899999999999987399997899999999999998875 No 31 >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Probab=98.51 E-value=5.5e-06 Score=54.09 Aligned_cols=131 Identities=21% Similarity=0.173 Sum_probs=67.2 Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC-CHHHHHHH----HHHHHHHHH Q ss_conf 4138766699999997312552069999999999995110057789999998731268-95789999----999999630 Q gi|254780421|r 64 FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLA-PLAVRYAA----TLQAASILV 138 (218) Q Consensus 64 ~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~-~~~~~~lA----~l~la~~~~ 138 (218) ...+++++|+..+++.....|+. +.+...+|.++...|++++|+..|+..++-.+. +..+..++ +..+..... T Consensus 349 ~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~ 426 (514) T 2gw1_A 349 YRENKFDDCETLFSEAKRKFPEA--PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNP 426 (514) T ss_dssp TTTTCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSC T ss_pred CCCHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 00014799999999999869984--6888757788787505999999999998729888899998999999877677888 Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH Q ss_conf 26998999999753114642356899999999999889989999999999835589989 Q gi|254780421|r 139 DTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFG 197 (218) Q Consensus 139 ~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~ 197 (218) ..+++++|+..+.....- .|-...++..+|.++...|++++|++.|+++++-..+++. T Consensus 427 ~~~~~~~A~~~~~kal~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~kal~l~~~~~e 484 (514) T 2gw1_A 427 TVENFIEATNLLEKASKL-DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514) T ss_dssp CTTHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH T ss_pred HCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH T ss_conf 665899999999999973-9998999999999999859999999999999865899399 No 32 >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Probab=98.48 E-value=1.4e-05 Score=51.56 Aligned_cols=138 Identities=12% Similarity=0.023 Sum_probs=79.7 Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 99841387666999999973125520699999999999951100577899999987312689578999999999963026 Q gi|254780421|r 61 LELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDT 140 (218) Q Consensus 61 l~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~ 140 (218) ......+++++|+..+++.....+... .+.+.++..+...|+.++|...|+.++...+.++ .+...++.++... T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~~~~~~~~~ 206 (330) T 3hym_B 133 HSFAVESEHDQAMAAYFTAAQLMKGCH--LPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP----FVMHEVGVVAFQN 206 (330) T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCS--HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH----HHHHHHHHHHHHT T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHH T ss_conf 999987999999999999998511378--9999988999981771667999999986187510----2223467777740 Q ss_pred CCHHHHHHHHHHHCC-------C-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHH Q ss_conf 998999999753114-------6-4235689999999999988998999999999983-55899899999999 Q gi|254780421|r 141 SSYEEISKILQKLSE-------P-SNPMHQFANEILGISALKFGKVQKAKTIFEELAK-DNNSPFGISTRSQM 204 (218) Q Consensus 141 ~~~d~a~~~l~~~~~-------~-~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~-~~~~p~~~r~ra~~ 204 (218) ++++++...+..... . ..+.....+..+|.++...|++++|++.|++++. .++.+......+.. T Consensus 207 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 279 (330) T 3hym_B 207 GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYI 279 (330) T ss_dssp TCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 1399999999999997075210111123677765321357763449999999999998698989999999999 No 33 >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Probab=98.47 E-value=6.3e-06 Score=53.73 Aligned_cols=133 Identities=15% Similarity=0.109 Sum_probs=86.0 Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 99841387666999999973125520699999999999951100577899999987312689578999999999963026 Q gi|254780421|r 61 LELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDT 140 (218) Q Consensus 61 l~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~ 140 (218) ......+++++++..++......+.. ....+..+.++...++.+.|+..+...+.....+. .+...++.++... T Consensus 99 ~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 172 (243) T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMEN--GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT----EARFQFGMCLANE 172 (243) T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCS--HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHH T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHC T ss_conf 99998356055688888877640006--99998778888888758999999999987087427----7665310135402 Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHH Q ss_conf 998999999753114642356899999999999889989999999999835-589989999 Q gi|254780421|r 141 SSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSPFGIST 200 (218) Q Consensus 141 ~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~r~ 200 (218) +++++++..+...... .|....+...+|.++...|++++|++.|++++.- ++-+..+.. T Consensus 173 ~~~~~A~~~~~~ai~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~A~~~ 232 (243) T 2q7f_A 173 GMLDEALSQFAAVTEQ-DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243) T ss_dssp TCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 6379999999999987-88989999999999999599999999999999829898999998 No 34 >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Probab=98.47 E-value=4.5e-05 Score=48.49 Aligned_cols=138 Identities=18% Similarity=0.139 Sum_probs=81.1 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 99998413876669999999731255206999999999999511005778999999873126895789999999999630 Q gi|254780421|r 59 QALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILV 138 (218) Q Consensus 59 ~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~ 138 (218) -+......+++++|+..+++.++..|+. ..+.+.++.++...|++++|+..+...+...+.+. ......+.++. T Consensus 63 lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~ 136 (243) T 2q7f_A 63 FANLLSSVNELERALAFYDKALELDSSA--ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG----DLFYMLGTVLV 136 (243) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH----HHHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH T ss_conf 9999998789999999999998609862--99999878999983560556888888776400069----99987788888 Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHH Q ss_conf 26998999999753114642356899999999999889989999999999835-589989999999 Q gi|254780421|r 139 DTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSPFGISTRSQ 203 (218) Q Consensus 139 ~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~r~ra~ 203 (218) ..++++.++..+...... .+....+...+|.++...|++++|...|++++.. ++.+.....++. T Consensus 137 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~lg~ 201 (243) T 2q7f_A 137 KLEQPKLALPYLQRAVEL-NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGV 201 (243) T ss_dssp HTSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 887589999999999870-87427766531013540263799999999999878898999999999 No 35 >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B Probab=98.46 E-value=5.1e-06 Score=54.32 Aligned_cols=137 Identities=15% Similarity=0.064 Sum_probs=77.5 Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 98413876669999999731255206999999999999511005778999999873126895789999999999630269 Q gi|254780421|r 62 ELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTS 141 (218) Q Consensus 62 ~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~ 141 (218) .....+...+|+..++++....++. +.+.+.+|.++...|++++|+..++..+...+.+... -+...++.+++..+ T Consensus 75 ~l~~~~~~~~A~~~~~~~l~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~~~~~g 150 (310) T 3mv2_B 75 DLYVQFLDTKNIEELENLLKDKQNS--PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTT--ELLLLAIEVALLNN 150 (310) T ss_dssp HHHHHHHTTTCCHHHHHTTTTSCCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHH--HHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHHCC T ss_conf 9999872588999999987509999--9999999999998487388999999998638763229--99999999999859 Q ss_pred CHHHHHHHHHHHCCCCC--H-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 98999999753114642--3-----5689999999999988998999999999983558998999999 Q gi|254780421|r 142 SYEEISKILQKLSEPSN--P-----MHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRS 202 (218) Q Consensus 142 ~~d~a~~~l~~~~~~~~--~-----~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra 202 (218) ++++|.+.+.....-.+ + .........+.++...|++++|...|+++....+.+..+..++ T Consensus 151 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~A~~~~~~l~~~~~~~~~~~~la 218 (310) T 3mv2_B 151 NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLL 218 (310) T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 99999999999986190342201499999999999999870049999999999886499799999999 No 36 >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Probab=98.46 E-value=2.9e-05 Score=49.61 Aligned_cols=138 Identities=16% Similarity=0.118 Sum_probs=77.9 Q ss_pred HHHHHHHHHH-HHCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHCC--CCHHH Q ss_conf 9999999998-4138766699999997312----5520699999999999951-1005778999999873126--89578 Q gi|254780421|r 54 GENFAQALEL-FNSNKLDDARSSFEKILSQ----DNKLYNPLSNMYIASILVA-KGDTKNAAEIFLKVANDDL--APLAV 125 (218) Q Consensus 54 s~~y~~al~~-~~~~~~~~A~~~l~~l~~~----~~~~ya~lA~l~lA~~~~~-~g~~~~A~~~l~~i~~~~~--~~~~~ 125 (218) +..|..+-.. ...+++++|+..+.+..+. +...-+..+...++.++.. .|++++|+..|+..++-.. ..+.. T Consensus 77 a~~~~~~~~~y~~~~~~~~A~~~~~~a~~~~~~~g~~~~a~~~~~~la~~~~~~~~~~~~A~~~y~kA~~~~~~~~~~~~ 156 (292) T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH T ss_conf 99999999999876987999999999999877537416899999999899998721099999999999987553688898 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC--CC---HHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf 9999999999630269989999997531146--42---356-899999999999889989999999999835 Q gi|254780421|r 126 RYAATLQAASILVDTSSYEEISKILQKLSEP--SN---PMH-QFANEILGISALKFGKVQKAKTIFEELAKD 191 (218) Q Consensus 126 ~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~--~~---~~~-~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~ 191 (218) ..-+...++.++...+++++|+..+...... .. .+. .......|.+++..||...|++.|++.... T Consensus 157 ~~~~~~~la~~~~~~~~y~~A~~~y~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~A~~~~~~~~~~ 228 (292) T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 999999999999984369999999999998734134656889999999999999808999999999999975 No 37 >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomics, unkown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Probab=98.43 E-value=3.7e-05 Score=49.01 Aligned_cols=131 Identities=19% Similarity=0.162 Sum_probs=76.4 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 99998413876669999999731255206999999999999511005778999999873126895789999999999630 Q gi|254780421|r 59 QALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILV 138 (218) Q Consensus 59 ~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~ 138 (218) -+......+++++|+..+++.++..|+. .-+.+.++.++...|++++|+..+..++...+.+.... + .+.++.... T Consensus 83 lg~~~~~~g~~~~Ai~~~~~al~~~p~~--~~a~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~-~~~~~~~~~ 158 (275) T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVLELDPTY--NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRS-L-WLYLAEQKL 158 (275) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-H-HHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHH-H-HHHHHHHHC T ss_conf 9999988589999999976500138317--89999862321023669999999999987297679999-9-999999984 Q ss_pred ------------------------------CCCCHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf ------------------------------269989999997531146---42356899999999999889989999999 Q gi|254780421|r 139 ------------------------------DTSSYEEISKILQKLSEP---SNPMHQFANEILGISALKFGKVQKAKTIF 185 (218) Q Consensus 139 ------------------------------~~~~~d~a~~~l~~~~~~---~~~~~~~a~ellg~~~~~~Gd~~~A~~~y 185 (218) .................. ..|-...+...+|.++...|++++|.+.| T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 238 (275) T 1xnf_A 159 DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238 (275) T ss_dssp CHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 90999999999997377336234689999866532001378999988887738120999999999999878999999999 Q ss_pred HHHHHCCC Q ss_conf 99983558 Q gi|254780421|r 186 EELAKDNN 193 (218) Q Consensus 186 ~~i~~~~~ 193 (218) ++++...+ T Consensus 239 ~~Al~~~p 246 (275) T 1xnf_A 239 KLAVANNV 246 (275) T ss_dssp HHHHTTCC T ss_pred HHHHHCCC T ss_conf 99988498 No 38 >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Probab=98.37 E-value=1.7e-05 Score=51.02 Aligned_cols=119 Identities=12% Similarity=0.010 Sum_probs=80.1 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHC------------CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHH Q ss_conf 99999951100577899999987312------------689578999999999963026998999999753114642356 Q gi|254780421|r 94 YIASILVAKGDTKNAAEIFLKVANDD------------LAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMH 161 (218) Q Consensus 94 ~lA~~~~~~g~~~~A~~~l~~i~~~~------------~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~ 161 (218) .++..++..|++++|+..|+..+.-. ..-......+.+.++..++..+++++|+..+.....-+ |-. T Consensus 228 ~~Gn~~fk~g~y~~Ai~~Y~kAL~~l~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~kl~~y~~Ai~~~~kaL~ld-p~~ 306 (370) T 1ihg_A 228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSN 306 (370) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTC T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCHHCCHHHCCHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC T ss_conf 9999999859999999999999951300210000055554191169999999999998488899999999999849-998 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH Q ss_conf 8999999999998899899999999998355899899999999999500340 Q gi|254780421|r 162 QFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANIIASD 213 (218) Q Consensus 162 ~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l~~~~ 213 (218) ..++..+|.++...|++++|.+.|++++.-.+....++.........+.... T Consensus 307 ~ka~~~~g~a~~~lg~~e~A~~~~~kal~l~P~n~~~~~~l~~~~~~l~~~~ 358 (370) T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358 (370) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9999999999998699999999999999849998999999999999999999 No 39 >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=98.34 E-value=1.5e-05 Score=51.49 Aligned_cols=115 Identities=15% Similarity=0.009 Sum_probs=85.7 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114642356899999999 Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGI 170 (218) Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~ 170 (218) .....+..++.+|++++|+..|.+++.-.+ .........+.++.+++..+++++++..+.....-+ |-...++..+|. T Consensus 30 ~l~~~Gn~~f~~~~y~~Ai~~y~kAl~l~~-~~~~~~~~~~n~~~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~lg~ 107 (148) T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDA-TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQ 107 (148) T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHH T ss_conf 999999999996899999999999987454-877799999999999998568889999899999878-998999999999 Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC Q ss_conf 99988998999999999983558998999999999995003 Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANIIA 211 (218) Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l~~ 211 (218) ++...|++++|+..|++++...+....+ +..|..|.+ T Consensus 108 ~~~~~~~~~~A~~~~~kal~l~P~n~~~----~~~L~~l~~ 144 (148) T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVF----QEALRNISG 144 (148) T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHH----HHHHHHHHC T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHC T ss_conf 9998789999999999999858898999----999987628 No 40 >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Probab=98.34 E-value=2.8e-05 Score=49.71 Aligned_cols=111 Identities=18% Similarity=0.136 Sum_probs=84.7 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 99999999999951100577899999987312689578999999999963026998999999753114642356899999 Q gi|254780421|r 88 NPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEI 167 (218) Q Consensus 88 a~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~el 167 (218) .+-+-+.+|.+++..|++++|+..|+.++...+... .+....+.++...+++++|+..+...... .|....+... T Consensus 8 ~~eay~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~ai~~-~p~~~~~~~~ 82 (125) T 1na0_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYN 82 (125) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHH T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCHHHHHH T ss_conf 399999999999996899999999999987595669----99999999999828822679999999986-8998699997 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHH Q ss_conf 999999889989999999999835-589989999999 Q gi|254780421|r 168 LGISALKFGKVQKAKTIFEELAKD-NNSPFGISTRSQ 203 (218) Q Consensus 168 lg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~r~ra~ 203 (218) +|.++.+.|++++|.+.|++++.- ++.|.....++. T Consensus 83 la~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~la~ 119 (125) T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH T ss_pred HCHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 6747660275999999999999878897999999999 No 41 >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Probab=98.32 E-value=3.4e-05 Score=49.23 Aligned_cols=99 Identities=15% Similarity=0.071 Sum_probs=75.9 Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHCCC-CCHHHHHHHHHHHH Q ss_conf 9999951100577899999987312689578999999999963026998---9999997531146-42356899999999 Q gi|254780421|r 95 IASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSY---EEISKILQKLSEP-SNPMHQFANEILGI 170 (218) Q Consensus 95 lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~---d~a~~~l~~~~~~-~~~~~~~a~ellg~ 170 (218) ++..++..+++++|...|+..+...+.++ -+.+.++..++..++. .+|+..+...... ..|....++..+|. T Consensus 7 l~~~~~~~~dl~kAe~~y~~al~~~p~~~----~~~~n~a~~L~~~~~~~d~~~Ai~~l~~~l~~~~~p~~~~~~~~La~ 82 (126) T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGSVSK----STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 82 (126) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH T ss_conf 99875288999999999999974199999----99999999999859877899999999998750479977999999999 Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHH Q ss_conf 999889989999999999835589989 Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDNNSPFG 197 (218) Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~~~p~~ 197 (218) +|.+.|++++|++.|++++...+.... T Consensus 83 ~y~~~g~~~~A~~~~~~~L~~~P~~~~ 109 (126) T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQTEPQNNQ 109 (126) T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHH T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHH T ss_conf 999839959999999999987919699 No 42 >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transcription activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Probab=98.31 E-value=0.00016 Score=45.05 Aligned_cols=61 Identities=13% Similarity=0.068 Sum_probs=32.1 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 999999963026998999999753114-----6423568999999999998899899999999998 Q gi|254780421|r 129 ATLQAASILVDTSSYEEISKILQKLSE-----PSNPMHQFANEILGISALKFGKVQKAKTIFEELA 189 (218) Q Consensus 129 A~l~la~~~~~~~~~d~a~~~l~~~~~-----~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~ 189 (218) +...++.+++..++++++...+..... ...+....++..+|.++...|+.++|+..|++++ T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 320 (373) T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999999999983462889999999999998758966899999999999998799999999999999 No 43 >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Probab=98.31 E-value=7.8e-05 Score=46.98 Aligned_cols=141 Identities=11% Similarity=0.080 Sum_probs=89.3 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC Q ss_conf 99984138766699999997312552069999999999995110057789999998731268957899999999996302 Q gi|254780421|r 60 ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVD 139 (218) Q Consensus 60 al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~ 139 (218) +......+++++|+..+.+. .+ .......+.++...|+.+.|...++.+++-.+.+. .....+..+.+... T Consensus 108 a~~~~~~~~~~~Al~~~~~~----~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~--~~~~~~~~~~~~~~ 178 (291) T 3mkr_A 108 ASIYFYDQNPDAALRTLHQG----DS---LECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT--LTQLATAWVSLAAG 178 (291) T ss_dssp HHHHHHTTCHHHHHHHHTTC----CS---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHC T ss_pred HHHHHHCCCHHHHHHHHHCC----CC---CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCC T ss_conf 99999879999999987453----66---55589999999986998889999999998642577--99999835777505 Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCC Q ss_conf 6998999999753114642356899999999999889989999999999835-58998999999999995003 Q gi|254780421|r 140 TSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSPFGISTRSQMILANIIA 211 (218) Q Consensus 140 ~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~r~ra~~~l~~l~~ 211 (218) .+++++|+..+....... |.....+..+|.++...|++++|++.|++++.. ++.|..+...+ .....++. T Consensus 179 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~-~~~~~~g~ 249 (291) T 3mkr_A 179 GEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV-VLSQHLGK 249 (291) T ss_dssp TTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHTTC T ss_pred CCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHCCC T ss_conf 423999999888888750-146999988999999819889999999999986899999999999-99998699 No 44 >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Probab=98.29 E-value=3.8e-05 Score=48.93 Aligned_cols=107 Identities=9% Similarity=-0.010 Sum_probs=76.6 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 99999999995110057789999998731268957899999999996302699899999975311464235689999999 Q gi|254780421|r 90 LSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILG 169 (218) Q Consensus 90 lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg 169 (218) -+....|..++..|++++|+..|+.++.-.+.+. .+.+.++.++...+++++|+..+.....-. |-...++..+| T Consensus 13 e~l~~~G~~~~~~~~y~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~lg 87 (131) T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA----VYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131) T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHHHHHHHHH T ss_conf 9999999999995899999999999998689989----999848899887277688999999999886-32379998899 Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHH Q ss_conf 99998899899999999998355899899999 Q gi|254780421|r 170 ISALKFGKVQKAKTIFEELAKDNNSPFGISTR 201 (218) Q Consensus 170 ~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~r 201 (218) .++...|++++|++.|++++...+....++.. T Consensus 88 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 119 (131) T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSN 119 (131) T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 99850256999999999999769698999999 No 45 >2r5s_A Uncharacterized protein VP0806; APC090868.1, structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus rimd 2210633} Probab=98.29 E-value=1.6e-05 Score=51.20 Aligned_cols=130 Identities=8% Similarity=0.008 Sum_probs=102.3 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 99999999841387666999999973125520699999999999951100577899999987312689578999999999 Q gi|254780421|r 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAA 134 (218) Q Consensus 55 ~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la 134 (218) ..+.-+....+.+++++|...++.+....++. ..+.+..+..+...++...++..+...+...+.+. -+.+.++ T Consensus 42 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~----~~~~~la 115 (176) T 2r5s_A 42 VKLAKADCLLETKQFELAQELLATIPLEYQDN--SYKSLIAKLELHQQAAESPELKRLEQELAANPDNF----ELACELA 115 (176) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCH----HHHHHHH T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHH----HHHHHHH T ss_conf 99999999998298313379999987617410--24358999999871131999999998761186408----9999899 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 963026998999999753114642-35689999999999988998999999999983 Q gi|254780421|r 135 SILVDTSSYEEISKILQKLSEPSN-PMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218) Q Consensus 135 ~~~~~~~~~d~a~~~l~~~~~~~~-~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218) .++...+++++++..+..+...+. .....+...+|.++...|+.++|...|++.+. T Consensus 116 ~~~~~~~~~~~A~~~l~~~l~~d~~~~~~~~~~~l~~~~~~lg~~d~a~~~yr~~l~ 172 (176) T 2r5s_A 116 VQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176) T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH T ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH T ss_conf 998872329999999999998788864799999999999985997599999999998 No 46 >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Probab=98.28 E-value=4e-05 Score=48.77 Aligned_cols=98 Identities=8% Similarity=-0.003 Sum_probs=52.6 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 99999999999984138766699999997312552069999999999995110057789999998731268957899999 Q gi|254780421|r 51 NIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAAT 130 (218) Q Consensus 51 ~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~ 130 (218) ..+......+...+..+++++|+..|.+.+.-.|.. ..+.+.+|.+++..|++++|+..++..++-.+.+. -+. T Consensus 11 ~~A~~l~~~Gn~~~~~~~y~~Ai~~y~kal~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~ 84 (166) T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI----KGY 84 (166) T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH----HHH T ss_conf 999999999999999589999999999999839988--89999788999985651357999999998375578----999 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHC Q ss_conf 999996302699899999975311 Q gi|254780421|r 131 LQAASILVDTSSYEEISKILQKLS 154 (218) Q Consensus 131 l~la~~~~~~~~~d~a~~~l~~~~ 154 (218) ++++.++...+++++|+..+.... T Consensus 85 ~~~g~~~~~~~~~~~A~~~~~~al 108 (166) T 1a17_A 85 YRRAASNMALGKFRAALRDYETVV 108 (166) T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 999999999599999999999998 No 47 >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics consortium, SGC, coiled coil, microtubule, motor protein; 2.70A {Homo sapiens} PDB: 3ceq_A Probab=98.26 E-value=0.00011 Score=46.04 Aligned_cols=129 Identities=12% Similarity=0.071 Sum_probs=75.1 Q ss_pred HHHHCCCHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC----CCCHHHHHHHHH Q ss_conf 984138766699999997312------5520699999999999951100577899999987312----689578999999 Q gi|254780421|r 62 ELFNSNKLDDARSSFEKILSQ------DNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDD----LAPLAVRYAATL 131 (218) Q Consensus 62 ~~~~~~~~~~A~~~l~~l~~~------~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~----~~~~~~~~lA~l 131 (218) .....+++++|+..+++..+- ..+.....+...++.++...|++++|+..|+..++-. ..+.+-...+.. T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~~~~~~~~~~~a~~~~ 173 (283) T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283) T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf 99986887889987888999999861668868999999871765503755889998888999999862899989999999 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHC------------------------------------------------CCCCHHHHH Q ss_conf 99996302699899999975311------------------------------------------------464235689 Q gi|254780421|r 132 QAASILVDTSSYEEISKILQKLS------------------------------------------------EPSNPMHQF 163 (218) Q Consensus 132 ~la~~~~~~~~~d~a~~~l~~~~------------------------------------------------~~~~~~~~~ 163 (218) .++.++...+++++|+..+.... ..+.|.... T Consensus 174 ~Lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283) T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283) T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 99999987687999999999999987776554425667888888775552146999999999999999986438846999 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 999999999988998999999999983 Q gi|254780421|r 164 ANEILGISALKFGKVQKAKTIFEELAK 190 (218) Q Consensus 164 a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218) +...+|.+|..+|++++|.+.+++++. T Consensus 254 ~~~~La~~y~~~G~~~eA~~l~e~Al~ 280 (283) T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASR 280 (283) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999999981999999999999998 No 48 >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Probab=98.26 E-value=4e-05 Score=48.80 Aligned_cols=104 Identities=11% Similarity=0.035 Sum_probs=77.8 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 99999999511005778999999873126895789999999999630269989999997531146423568999999999 Q gi|254780421|r 92 NMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGIS 171 (218) Q Consensus 92 ~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~ 171 (218) ....+..++..|++++|+..|...+.-.+.+. .+...++.++...+++++|+..+.....- .|....++..+|.+ T Consensus 7 L~~~G~~~~~~g~y~~A~~~~~~ai~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~lg~~ 81 (118) T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKAAA 81 (118) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHH T ss_conf 99999999996999999999999998689989----99999999999848832000689999986-98979999999999 Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 99889989999999999835589989999 Q gi|254780421|r 172 ALKFGKVQKAKTIFEELAKDNNSPFGIST 200 (218) Q Consensus 172 ~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ 200 (218) +...|++++|...|++++...+....+.. T Consensus 82 ~~~~~~~~~A~~~~~~a~~l~p~~~~~~~ 110 (118) T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKE 110 (118) T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHH T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 99949999999999999971989899999 No 49 >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle, cell division, mitosis, TPR repeat; 2.50A {Homo sapiens} Probab=98.25 E-value=9.7e-06 Score=52.58 Aligned_cols=135 Identities=13% Similarity=0.075 Sum_probs=96.1 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHC---CCC----CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHH Q ss_conf 999999984138766699999997312---552----0699999999999951100577899999987312689578999 Q gi|254780421|r 56 NFAQALELFNSNKLDDARSSFEKILSQ---DNK----LYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYA 128 (218) Q Consensus 56 ~y~~al~~~~~~~~~~A~~~l~~l~~~---~~~----~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~l 128 (218) .+..+....+.|.++.+......+..- .+. .-..-+.+.++..++..|++.+|+..|+.++... T Consensus 23 ~l~~~~~l~~~G~~~~a~~~~~~ll~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~y~~A~~~~~~al~~~--------- 93 (167) T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK--------- 93 (167) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------- T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------- T ss_conf 99999999986576569999999987602597642898999999999999998667999999999999961--------- Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 99999996302699899999975311464235689999999999988998999999999983558998999999999995 Q gi|254780421|r 129 ATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILAN 208 (218) Q Consensus 129 A~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~ 208 (218) .+..+...+++++|+..+...... .|....++..+|.+|...|++++|.+.|+++...+..|. +.+.|+. T Consensus 94 ----~~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~Ai~~le~i~~~~~~~~-----~~~~Lg~ 163 (167) T 3ffl_A 94 ----KALSKTSKVRPSTGNSASTPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPK-----INMLLAN 163 (167) T ss_dssp ----HCC--------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHH-----HHHHHHH T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH-----HHHHHHH T ss_conf ----999999877799999999999874-935699999999999983999999999999986289979-----9999999 Q ss_pred H Q ss_conf 0 Q gi|254780421|r 209 I 209 (218) Q Consensus 209 l 209 (218) + T Consensus 164 l 164 (167) T 3ffl_A 164 L 164 (167) T ss_dssp H T ss_pred H T ss_conf 8 No 50 >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A Probab=98.24 E-value=1.6e-05 Score=51.23 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=35.8 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114 Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSE 155 (218) Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~ 155 (218) ..+.+|.+++..|++.+|+..++.+++-.+.+ .+ |.++++..++..+++++|+..+..... T Consensus 319 ~~~Nla~~~~kl~~~~~A~~~~~~al~~dp~n--~k--a~~~~g~~~~~~~~~e~A~~~~~kal~ 379 (457) T 1kt0_A 319 AFLNLAMCYLKLREYTKAVECCDKALGLDSAN--EK--GLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HH--HHHHHHHHHHHTTCHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HH--HHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99999999998589999999999999878877--69--999999999986899999999999998 No 51 >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Probab=98.23 E-value=6.2e-05 Score=47.61 Aligned_cols=60 Identities=15% Similarity=0.036 Sum_probs=30.3 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC Q ss_conf 9999999995110057789999998731268957899999999996302699899999975311 Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLS 154 (218) Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~ 154 (218) +.+.+|.+++..+++.+|+..+..++.-.+.+ . -+.++++..++..+++++|+..+.... T Consensus 198 ~~~Nla~~y~k~~~~~~A~~~~~~al~~~p~n--~--~a~~~~g~~~~~~~~~~~A~~~~~~al 257 (336) T 1p5q_A 198 SHLNLAMCHLKLQAFSAAIESCNKALELDSNN--E--KGLSRRGEAHLAVNDFELARADFQKVL 257 (336) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--H--HHHHHHHHHHHHTTCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC--H--HHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99889999999388899999999987634123--7--999999999998689999999999999 No 52 >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Probab=98.19 E-value=1e-05 Score=52.46 Aligned_cols=98 Identities=11% Similarity=-0.008 Sum_probs=81.4 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114642356899999999 Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGI 170 (218) Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~ 170 (218) ..|.+|..++..|++++|+..|+.++...+... .+...++.++...+++++|+..+.....- +|-...++..+|. T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~~i~~~P~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~la~ 93 (121) T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPERE----EAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAV 93 (121) T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHH T ss_conf 999999999996999999999999998699879----99999999999848802446888999997-9898999999999 Q ss_pred HHHHCCCHHHHHHHHHHHHHCCC Q ss_conf 99988998999999999983558 Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDNN 193 (218) Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~~ 193 (218) ++...|+.++|.+.|++++...+ T Consensus 94 ~~~~~g~~~~A~~~~~~~l~~~P 116 (121) T 1hxi_A 94 SHTNEHNANAALASLRAWLLSQP 116 (121) T ss_dssp HHHHHHHHHHHHHHHHHHHC--- T ss_pred HHHHCCCHHHHHHHHHHHHHHCC T ss_conf 99995999999999999998684 No 53 >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Probab=98.17 E-value=2.7e-05 Score=49.88 Aligned_cols=91 Identities=13% Similarity=0.010 Sum_probs=50.0 Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 99511005778999999873126895789999999999630269989999997531146423568999999999998899 Q gi|254780421|r 98 ILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGK 177 (218) Q Consensus 98 ~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd 177 (218) .++.+|++++|+..|+.+++-.+.+. .+...++..+...+++++|+..+.....-+ |....++..+|.++...|+ T Consensus 15 ~~~~~g~y~~Ai~~y~kal~~~p~~~----~~~~~la~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~~~~~~g~ 89 (477) T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNA----IYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477) T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC T ss_conf 99985899999999999998099989----999999999998399999999999999849-9989999999999998599 Q ss_pred HHHHHHHHHHHHHCCC Q ss_conf 8999999999983558 Q gi|254780421|r 178 VQKAKTIFEELAKDNN 193 (218) Q Consensus 178 ~~~A~~~y~~i~~~~~ 193 (218) +++|.+.|++++...+ T Consensus 90 ~~~A~~~~~~al~l~P 105 (477) T 1wao_1 90 FRAALRDYETVVKVKP 105 (477) T ss_dssp HHHHHHHHHHHHHHST T ss_pred HHHHHHHHHHHHHHCC T ss_conf 9999999999898688 No 54 >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Probab=98.16 E-value=0.00011 Score=46.09 Aligned_cols=107 Identities=16% Similarity=0.152 Sum_probs=76.5 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC------CCCHHHH Q ss_conf 9999999999951100577899999987312689578999999999963026998999999753114------6423568 Q gi|254780421|r 89 PLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSE------PSNPMHQ 162 (218) Q Consensus 89 ~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~------~~~~~~~ 162 (218) .+..-.++..++..|++++|+..|...+.-.+.++ .+...++..+...+++++|+..+..... ...+..+ T Consensus 4 a~~~k~~G~~~~~~g~~~~Ai~~~~~al~~~p~~~----~~~~nla~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a 79 (131) T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM----TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 99999999999986899999999999987099989----99985789998819899999979999986923617678999 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 9999999999988998999999999983558998999 Q gi|254780421|r 163 FANEILGISALKFGKVQKAKTIFEELAKDNNSPFGIS 199 (218) Q Consensus 163 ~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r 199 (218) .....+|.++...|++++|++.|++.+...+.|..++ T Consensus 80 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 116 (131) T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLK 116 (131) T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHH T ss_conf 9999999999981999999999999970699999999 No 55 >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomics, unkown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Probab=98.16 E-value=0.00032 Score=43.20 Aligned_cols=99 Identities=12% Similarity=0.023 Sum_probs=49.2 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 99999999999951100577899999987312689578999999999963026998999999753114642356899999 Q gi|254780421|r 88 NPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEI 167 (218) Q Consensus 88 a~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~el 167 (218) ...+.+.++.++...|++++|+..|+..+.-.+... -+...++.++...+++++|+..+.....-. |-...++.. T Consensus 42 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~----~a~~~lg~~~~~~g~~~~Ai~~~~~al~~~-p~~~~a~~~ 116 (275) T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLN 116 (275) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CHHHHHHHH T ss_conf 999999999999987999999999999998099989----999999999988589999999976500138-317899998 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf 999999889989999999999835 Q gi|254780421|r 168 LGISALKFGKVQKAKTIFEELAKD 191 (218) Q Consensus 168 lg~~~~~~Gd~~~A~~~y~~i~~~ 191 (218) +|.++...|++.+|...|++++.. T Consensus 117 l~~~~~~~g~~~~A~~~~~~al~~ 140 (275) T 1xnf_A 117 RGIALYYGGRDKLAQDDLLAFYQD 140 (275) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH T ss_pred HHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 623210236699999999999872 No 56 >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Probab=98.16 E-value=0.0001 Score=46.26 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=52.2 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH Q ss_conf 99999996302699899999975311464235689999999999988998999999999983558998999999999995 Q gi|254780421|r 129 ATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILAN 208 (218) Q Consensus 129 A~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~ 208 (218) ..+.++.+++..+++++|+..+.....-+ |....++..+|.++...|++++|+..|++++...+....++........- T Consensus 90 ~~~Nla~~y~~~~~~~~Ai~~~~~aL~l~-p~~~~a~~~~g~~~~~lg~~~~A~~~~~kal~l~P~n~~~~~~l~~~~~~ 168 (198) T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 99999999998689999999999999869-88699999999999997799999999999997298999999999999999 Q ss_pred H Q ss_conf 0 Q gi|254780421|r 209 I 209 (218) Q Consensus 209 l 209 (218) + T Consensus 169 ~ 169 (198) T 2fbn_A 169 L 169 (198) T ss_dssp H T ss_pred H T ss_conf 9 No 57 >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Probab=98.16 E-value=7.7e-05 Score=47.02 Aligned_cols=114 Identities=17% Similarity=0.089 Sum_probs=86.2 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114642356899999999 Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGI 170 (218) Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~ 170 (218) |.+.+|.++...|++++|+..|..++...+.+.. ....++.+....++++.+...+.....-. |....++..+|. T Consensus 3 ay~~lg~~~~~~~~~~~A~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~-p~~~~~~~~~a~ 77 (136) T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE----AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGN 77 (136) T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCHHHHHHHHH T ss_conf 8999999999968999999999999873954299----99999999998076155468999999859-877289998818 Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 999889989999999999835589989999999999950 Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANI 209 (218) Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l 209 (218) ++...|++++|...|++++...+..+......-.....+ T Consensus 78 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 116 (136) T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 116 (136) T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC T ss_conf 999848899999999999871986199999999999996 No 58 >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Probab=98.15 E-value=4.6e-05 Score=48.38 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=56.5 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 99999999984138766699999997312552069999999999995110057789999998731268957899999999 Q gi|254780421|r 54 GENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQA 133 (218) Q Consensus 54 s~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~l 133 (218) .+.-......+..+++++|+..+.+-++..|+. ..+.+.+|.++...|++++|+..++.+++-.+.. . -|.+++ T Consensus 5 ~~lk~~Gn~~~~~~~y~~Ai~~y~~Ai~~~p~~--~~~~~n~a~~y~~l~~~~~A~~~~~~al~l~p~~--~--~a~~~~ 78 (281) T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLV--AVYYTNRALCYLKMQQPEQALADCRRALELDGQS--V--KAHFFL 78 (281) T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC--H--HHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--H--HHHHHH T ss_conf 999999999998699999999999999858998--9999999999998599899999999999719857--8--999999 Q ss_pred HHHHHCCCCHHHHHHHHHH Q ss_conf 9963026998999999753 Q gi|254780421|r 134 ASILVDTSSYEEISKILQK 152 (218) Q Consensus 134 a~~~~~~~~~d~a~~~l~~ 152 (218) |.++...+++++|+..+.. T Consensus 79 g~~~~~~~~~~~A~~~~~k 97 (281) T 2c2l_A 79 GQCQLEMESYDEAIANLQR 97 (281) T ss_dssp HHHHHHTTCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999987765788899999 No 59 >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Probab=98.12 E-value=0.00012 Score=45.89 Aligned_cols=120 Identities=15% Similarity=0.035 Sum_probs=96.4 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHH Q ss_conf 99999999999984138766699999997312552069999999999995110057789999998731268957899999 Q gi|254780421|r 51 NIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAAT 130 (218) Q Consensus 51 ~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~ 130 (218) ..+-..+..+......+++++|+..|++.+...++. ..+.+.++.++...|++++|+..+..++...+.+. .+. T Consensus 10 ~~~e~l~~~G~~~~~~~~y~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~ 83 (131) T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN--AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS----KAY 83 (131) T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH----HHH T ss_conf 999999999999999589999999999999868998--99998488998872776889999999998863237----999 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 99999630269989999997531146423568999999999998899 Q gi|254780421|r 131 LQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGK 177 (218) Q Consensus 131 l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd 177 (218) +.++.++...+++++|+..+.....- .|....+...+|.++.+.++ T Consensus 84 ~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~l~e 129 (131) T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKKALEL-DPDNETYKSNLKIAELKLRE 129 (131) T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCC T ss_conf 88999985025699999999999976-96989999999999998738 No 60 >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.49A {Deinococcus radiodurans R1} Probab=98.11 E-value=0.00021 Score=44.27 Aligned_cols=155 Identities=13% Similarity=0.050 Sum_probs=99.4 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC---CCHHHHHHH Q ss_conf 99999984138766699999997312----55206999999999999511005778999999873126---895789999 Q gi|254780421|r 57 FAQALELFNSNKLDDARSSFEKILSQ----DNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDL---APLAVRYAA 129 (218) Q Consensus 57 y~~al~~~~~~~~~~A~~~l~~l~~~----~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~---~~~~~~~lA 129 (218) +.-+......+++++|+..+...... ++..-...+...++.++...|++++|+..+...+.... ......... T Consensus 30 ~~LG~~~~~~g~~~eA~~~~~~a~~~~~~~~~~~~~a~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 109 (203) T 3gw4_A 30 FMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASAN 109 (203) T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999879999999999999998988589868999999999999980767776888778887636542112688998 Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHC-----CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf 9999996302699899999975311-----46423568999999999998899899999999998355899899999999 Q gi|254780421|r 130 TLQAASILVDTSSYEEISKILQKLS-----EPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQM 204 (218) Q Consensus 130 ~l~la~~~~~~~~~d~a~~~l~~~~-----~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~ 204 (218) ....+......+.++++........ ....+..+.+...+|.++.+.|++++|++.|++.+.-...-.+ +..+.. T Consensus 110 ~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~~~~Lg~~~~~~g~~~~A~~~~~~Al~l~~~~~d-~~~~~~ 188 (203) T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED-SEAVNE 188 (203) T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHH T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-HHHHHH T ss_conf 8757899886110488779999999999874897579999999999999978999999999999999998799-899999 Q ss_pred HHHHHCCC Q ss_conf 99950034 Q gi|254780421|r 205 ILANIIAS 212 (218) Q Consensus 205 ~l~~l~~~ 212 (218) ++..|.+. T Consensus 189 i~~~L~~l 196 (203) T 3gw4_A 189 LMTRLNGL 196 (203) T ss_dssp HHHHHHTT T ss_pred HHHHHHCC T ss_conf 99998680 No 61 >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.49A {Deinococcus radiodurans R1} Probab=98.09 E-value=0.00047 Score=42.17 Aligned_cols=126 Identities=10% Similarity=0.098 Sum_probs=97.9 Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHCC Q ss_conf 841387666999999973125520699999999999951100577899999987312--689578999999999963026 Q gi|254780421|r 63 LFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDD--LAPLAVRYAATLQAASILVDT 140 (218) Q Consensus 63 ~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~--~~~~~~~~lA~l~la~~~~~~ 140 (218) .++.++++.|...++.++...++ ...+++.++.++...|++++|+..++..+... ..+......+...++.++... T Consensus 2 a~~~~~y~~A~~~~~~~l~~~~~--~~~a~~~LG~~~~~~g~~~eA~~~~~~a~~~~~~~~~~~~~a~a~~~lg~~~~~~ 79 (203) T 3gw4_A 2 AFEAHDYALAERQAQALLAHPAT--ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203) T ss_dssp -----CHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT T ss_pred CHHCCCHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 54247999999999998768975--5999999999999879999999999999998988589868999999999999980 Q ss_pred CCHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 99899999975311------464235689999999999988998999999999983 Q gi|254780421|r 141 SSYEEISKILQKLS------EPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218) Q Consensus 141 ~~~d~a~~~l~~~~------~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218) +++++++..+.... ..............|..+...|+.++|...+++.+. T Consensus 80 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 135 (203) T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203) T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 76777688877888763654211268899887578998861104887799999999 No 62 >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Probab=98.09 E-value=0.00027 Score=43.61 Aligned_cols=130 Identities=13% Similarity=0.028 Sum_probs=90.3 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HH Q ss_conf 99984138766699999997312552069999999999995110057789999998731268957899999999996-30 Q gi|254780421|r 60 ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASI-LV 138 (218) Q Consensus 60 al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~-~~ 138 (218) +......++.+.|...+++.....++. .....+..+..+...|+.+.|+..|...+...+.... +-+.++.+ .. T Consensus 328 ~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~a~l~~~ 402 (530) T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH----VYVTAALMEYY 402 (530) T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH----HHHHHHHHHHH T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHH T ss_conf 999863021899999999877626614-5899999999999806689999999999984899799----99999999988 Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC Q ss_conf 269989999997531146423568999999999998899899999999998355899 Q gi|254780421|r 139 DTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSP 195 (218) Q Consensus 139 ~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p 195 (218) ..++++.+.+.+....... |..+......|..+.+.|++++|++.|++++...+.+ T Consensus 403 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~e~al~~~~~~ 458 (530) T 2ooe_A 403 CSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 458 (530) T ss_dssp HTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC T ss_conf 6547999999999998649-9969999999999988889999999999998668998 No 63 >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Probab=98.07 E-value=0.00017 Score=44.96 Aligned_cols=115 Identities=20% Similarity=0.216 Sum_probs=93.2 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 99999999841387666999999973125520699999999999951100577899999987312689578999999999 Q gi|254780421|r 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAA 134 (218) Q Consensus 55 ~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la 134 (218) ..|.-+....+.+++++|+..|+......+.. ..+...++.++...+++++|+..++..+...+.+. .+.+.++ T Consensus 11 ay~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~ai~~~p~~~----~~~~~la 84 (125) T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLG 84 (125) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH----HHHHHHC T ss_conf 99999999999689999999999998759566--99999999999982882267999999998689986----9999767 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 963026998999999753114642356899999999999889 Q gi|254780421|r 135 SILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFG 176 (218) Q Consensus 135 ~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~G 176 (218) .++...+++++|+..+.....- .|....+...+|.++.++| T Consensus 85 ~~~~~~~~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~G 125 (125) T 1na0_A 85 NAYYKQGDYDEAIEYYQKALEL-DPNNAEAKQNLGNAKQKQG 125 (125) T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHC T ss_pred HHHHCCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCC T ss_conf 4766027599999999999987-8897999999999999774 No 64 >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Probab=98.07 E-value=0.00031 Score=43.29 Aligned_cols=107 Identities=12% Similarity=-0.015 Sum_probs=84.2 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114642356899999999 Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGI 170 (218) Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~ 170 (218) .....|..++..|++++|+..|..++.-.+.+. .+...++..++..+++++|+..+.....- .|....++..+|. T Consensus 15 ~l~~~Gn~~~~~~~y~~Ai~~y~kal~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~~g~ 89 (166) T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----IYYGNRSLAYLRTECYGYALGDATRAIEL-DKKYIKGYYRRAA 89 (166) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCHHHHHHHHH T ss_conf 999999999995899999999999998399888----99997889999856513579999999983-7557899999999 Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 99988998999999999983558998999999 Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDNNSPFGISTRS 202 (218) Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra 202 (218) ++...|++++|++.|++++...+.+....... T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~ 121 (166) T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKY 121 (166) T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 99995999999999999987296989999999 No 65 >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: e.61.1.1 Probab=98.06 E-value=4e-05 Score=48.79 Aligned_cols=129 Identities=9% Similarity=-0.000 Sum_probs=87.0 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH Q ss_conf 99998413876669999999731255206999999999999511005778999999873126895789999999999630 Q gi|254780421|r 59 QALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILV 138 (218) Q Consensus 59 ~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~ 138 (218) ++......++.++|+..+++.++..|+. .-++..++.++...|+.++|+..|+..++..+..... + ..++.+.. T Consensus 3 q~~~aL~~G~l~eAl~~l~~alr~~P~d--a~ar~~L~~lL~~~G~~~~A~~qL~~a~~l~P~~~~~---~-~~~~~ll~ 76 (273) T 1zbp_A 3 QWKNALSEGQLQQALELLIEAIKASPKD--ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG---A-SQLRHLVK 76 (273) T ss_dssp CHHHHTTTTCHHHHHHHHHHHHHTCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH---H-HHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH---H-HHHHHHHH T ss_conf 6999998799999999999999978999--9999999999998799999999999999879886899---9-99999998 Q ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC Q ss_conf 2699899999975311464235689999999999988998999999999983558 Q gi|254780421|r 139 DTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNN 193 (218) Q Consensus 139 ~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~ 193 (218) ......++........-...|-...++.+++.++...|+.++|.+.|.++....+ T Consensus 77 a~~~r~e~~a~~~~~~~~~~p~~~~a~l~~a~~~~~~Gd~e~A~~~~~~A~~l~P 131 (273) T 1zbp_A 77 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ 131 (273) T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC T ss_conf 3457589999999863313976899999999999977898999999999973699 No 66 >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Probab=98.05 E-value=0.00056 Score=41.70 Aligned_cols=133 Identities=16% Similarity=0.083 Sum_probs=92.9 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH Q ss_conf 99984138766699999997312---552069999999999995110057789999998731--2689578999999999 Q gi|254780421|r 60 ALELFNSNKLDDARSSFEKILSQ---DNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVAND--DLAPLAVRYAATLQAA 134 (218) Q Consensus 60 al~~~~~~~~~~A~~~l~~l~~~---~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~--~~~~~~~~~lA~l~la 134 (218) +......++++++...+.+.... .+........+..+......++.+.|+..|...+.- ....+....-+...++ T Consensus 83 g~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~aa~~~~~~~~~~~~~~~~~a~~~y~~A~~i~~~~~~~~~~~~~~~~la 162 (307) T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307) T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 99998726589999989999999886189067778887788998714599999999999999987599647999997488 Q ss_pred HHHHCCCCHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC Q ss_conf 963026998999999753114-----6423568999999999998899899999999998355 Q gi|254780421|r 135 SILVDTSSYEEISKILQKLSE-----PSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDN 192 (218) Q Consensus 135 ~~~~~~~~~d~a~~~l~~~~~-----~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~ 192 (218) .++...+++++|+..+..... ...+....+...+|.+++..||+..|...|++..... T Consensus 163 ~~~~~~~~y~eA~~~~~~a~~i~~~~~~~~~~~~~~~~l~~~~l~~gd~~~A~~~~~~a~~~~ 225 (307) T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIP 225 (307) T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC T ss_conf 998871689999999999999999868909999999979999998689999999999985566 No 67 >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Probab=98.02 E-value=0.00026 Score=43.77 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=80.8 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 99999999999841387666999999973125520699999999999951100577899999987312689578999999 Q gi|254780421|r 52 IVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATL 131 (218) Q Consensus 52 ~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l 131 (218) .....|..+......+++++|+..++.++...|.. +.+.+.+|.++...|++++|+..|+.++...+.+. .+.+ T Consensus 20 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~--~~~~~~lg~~~~~~~~~~~Ai~~~~~a~~~~~~~~----~~~~ 93 (148) T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD--SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP----RFPF 93 (148) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCH----HHHH T ss_conf 49999999999998699999999999999859599--99999999999986985789999997562486539----9999 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHC Q ss_conf 99996302699899999975311 Q gi|254780421|r 132 QAASILVDTSSYEEISKILQKLS 154 (218) Q Consensus 132 ~la~~~~~~~~~d~a~~~l~~~~ 154 (218) .++.++...+++++|+..+.... T Consensus 94 ~la~~~~~~g~~~~A~~~~~~al 116 (148) T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQ 116 (148) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999985578999999999998 No 68 >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Probab=98.01 E-value=2.2e-05 Score=50.32 Aligned_cols=136 Identities=13% Similarity=0.121 Sum_probs=80.2 Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC---------------HHHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 9999999999999841387666999999973125520---------------6999999999999511005778999999 Q gi|254780421|r 50 KNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKL---------------YNPLSNMYIASILVAKGDTKNAAEIFLK 114 (218) Q Consensus 50 ~~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~---------------ya~lA~l~lA~~~~~~g~~~~A~~~l~~ 114 (218) ...+......+...+..++++.|+..++..++..+.. +.....+.++.++...+++.+|+..+.. T Consensus 176 ~~~a~~~k~~GN~~fk~g~y~~Ai~~Y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~~~~Ai~~~~k 255 (338) T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338) T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 99999999999999985999999999799997486325556555589999999999999999999983566666889998 Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHH Q ss_conf 8731268957899999999996302699899999975311464235689999999999988998999-999999983 Q gi|254780421|r 115 VANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKA-KTIFEELAK 190 (218) Q Consensus 115 i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A-~~~y~~i~~ 190 (218) ++...+.+ .+ |.++++..+...+++++|+..+.....-+ |-...++..++.++.+.++..++ ++.|+++.. T Consensus 256 al~~~p~~--~k--a~~~~g~a~~~lg~~~~A~~~~~kAl~ld-P~n~~~~~~L~~l~~~~~~~~~~ek~~y~kmf~ 327 (338) T 2if4_A 256 VLTEEEKN--PK--ALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338) T ss_dssp HHHHCTTC--HH--HHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------ T ss_pred HHHCCCCC--HH--HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 64228752--89--99999999998789999999999999839-899999999999999998699999999998755 No 69 >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Probab=98.00 E-value=5.5e-05 Score=47.91 Aligned_cols=95 Identities=8% Similarity=0.067 Sum_probs=52.0 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHH------------ Q ss_conf 99999984138766699999997312552069999999999995110057789999998731268957------------ Q gi|254780421|r 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLA------------ 124 (218) Q Consensus 57 y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~------------ 124 (218) |.-+......+++++|+..|++.++-.+.. +.+.+.++.++...|++++|+..|+..+........ T Consensus 41 ~nlG~~y~~~~~~~~A~~~f~~Ai~l~p~~--~~a~~~~g~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~~~ 118 (213) T 1hh8_A 41 FNIGCMYTILKNMTEAEKAFTRSINRDKHL--AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKL 118 (213) T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEE T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC T ss_conf 999999998699999999999999866045--788877999999854589999999999985836725789986432365 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 89999999999630269989999997531 Q gi|254780421|r 125 VRYAATLQAASILVDTSSYEEISKILQKL 153 (218) Q Consensus 125 ~~~lA~l~la~~~~~~~~~d~a~~~l~~~ 153 (218) ...-+.+.++.++...+++++|...+... T Consensus 119 ~~~~~~~~~g~~~~~~~~~~~A~~~l~~A 147 (213) T 1hh8_A 119 FACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213) T ss_dssp EHHHHHHHHHHHHHHTTCHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 37999999999999969999999999999 No 70 >2hr2_A Hypothetical protein; NP_663012.1, structural genomics, PSI- 2, protein structure initiative, joint center for structural genomics, JCSG; 2.54A {Chlorobium tepidum tls} SCOP: a.118.8.8 Probab=97.96 E-value=0.00032 Score=43.22 Aligned_cols=119 Identities=13% Similarity=0.001 Sum_probs=70.8 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCH--------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC-------C- Q ss_conf 9999999511005778999999873126895--------78999999999963026998999999753114-------6- Q gi|254780421|r 93 MYIASILVAKGDTKNAAEIFLKVANDDLAPL--------AVRYAATLQAASILVDTSSYEEISKILQKLSE-------P- 156 (218) Q Consensus 93 l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~--------~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~-------~- 156 (218) +..+..++..|++++|+..|+..++-.+..+ .....+...++..+...++++++...+..... . T Consensus 15 ~~~g~~~~~~g~y~eA~~~y~kAl~~~~~~~~~~~~~~~~~~a~~~~n~g~~~~~lg~~~~A~~~~~~al~~~~~~~~~~ 94 (159) T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159) T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999859999999999999998234106777502377899999999999980869999999999998655313542 Q ss_pred --CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-------CCCHHHHHHHHHHHHHHCC Q ss_conf --423568999999999998899899999999998355-------8998999999999995003 Q gi|254780421|r 157 --SNPMHQFANEILGISALKFGKVQKAKTIFEELAKDN-------NSPFGISTRSQMILANIIA 211 (218) Q Consensus 157 --~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~-------~~p~~~r~ra~~~l~~l~~ 211 (218) ..+....+...+|.++...|++++|++.|++++.-. +.-..+...+...++.|++ T Consensus 95 ~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~Al~i~~~~~~~~~~~~~~~~~~~~~l~~lg~ 158 (159) T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQLGA 158 (159) T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC T ss_conf 2166668988876999998658848899999999986574040018999999999999997569 No 71 >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transcription activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Probab=97.96 E-value=0.00018 Score=44.78 Aligned_cols=127 Identities=13% Similarity=0.107 Sum_probs=43.4 Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHH Q ss_conf 841387666999999973125520---699999999999951100577899999987312--689578999999999963 Q gi|254780421|r 63 LFNSNKLDDARSSFEKILSQDNKL---YNPLSNMYIASILVAKGDTKNAAEIFLKVANDD--LAPLAVRYAATLQAASIL 137 (218) Q Consensus 63 ~~~~~~~~~A~~~l~~l~~~~~~~---ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~--~~~~~~~~lA~l~la~~~ 137 (218) ....|++++|+..+++.+...++. -...+...++.+++..|++++|+..+...+.-. ..+......+...++.++ T Consensus 24 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 103 (373) T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373) T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 99887999999999999854889992999999999999999879999999999999997475368799999999999999 Q ss_pred HCCCCHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 02699899999975311-------46423568999999999998899899999999998 Q gi|254780421|r 138 VDTSSYEEISKILQKLS-------EPSNPMHQFANEILGISALKFGKVQKAKTIFEELA 189 (218) Q Consensus 138 ~~~~~~d~a~~~l~~~~-------~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~ 189 (218) ...++++++...+.... .+..+........+|.++...|++++|...|++++ T Consensus 104 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~la~~~~~~g~~~~a~~~~~~a~ 162 (373) T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 162 (373) T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH T ss_pred HHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 98154899999999999997860466676999999999999998799899999999977 No 72 >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Probab=97.95 E-value=0.00014 Score=45.33 Aligned_cols=95 Identities=15% Similarity=0.076 Sum_probs=70.1 Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH Q ss_conf 99511005778999999873126895789999999999630269---989999997531146-42356899999999999 Q gi|254780421|r 98 ILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTS---SYEEISKILQKLSEP-SNPMHQFANEILGISAL 173 (218) Q Consensus 98 ~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~---~~d~a~~~l~~~~~~-~~~~~~~a~ellg~~~~ 173 (218) .+++.+++++|...|+..+...+.+.. +.+.++..+.... ++++++..+...... .+|....++..+|.+|. T Consensus 7 ~~~~~edl~kAek~Y~~al~~~~~~~~----~~~n~a~~L~~s~~~~~~~~Ai~ll~~~l~~~~~~~~~~~l~~La~~y~ 82 (152) T 1pc2_A 7 ELVSVEDLLKFEKKFQSEKAAGSVSKS----TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 82 (152) T ss_dssp CSCCHHHHHHHHHHHHHHHHTTCCCHH----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH T ss_pred HHCCHHHHHHHHHHHHHHHHCCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH T ss_conf 245899999999999998710999999----9999999998758777899999999998744699419999999999999 Q ss_pred HCCCHHHHHHHHHHHHHCCCCCH Q ss_conf 88998999999999983558998 Q gi|254780421|r 174 KFGKVQKAKTIFEELAKDNNSPF 196 (218) Q Consensus 174 ~~Gd~~~A~~~y~~i~~~~~~p~ 196 (218) +.|++++|++.|++++...+... T Consensus 83 ~~g~~~~A~~~~~~aL~idP~n~ 105 (152) T 1pc2_A 83 RLKEYEKALKYVRGLLQTEPQNN 105 (152) T ss_dssp HTSCHHHHHHHHHHHHHHCTTCH T ss_pred HCCCHHHHHHHHHHHHHHCCCCH T ss_conf 86999999999999997693989 No 73 >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCNACYLATION; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2vsn_A* Probab=97.91 E-value=0.00079 Score=40.75 Aligned_cols=129 Identities=9% Similarity=0.012 Sum_probs=94.4 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 99999999841387666999999973125520699999999999951100577899999987312689578999999999 Q gi|254780421|r 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAA 134 (218) Q Consensus 55 ~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la 134 (218) ..+.-+......|+.++|+..+++.+.-.++. ..+...+|.++.+.|++++|+..|+.+++-.+... .+.+.++ T Consensus 25 a~~~Lg~~~~~~g~~~~A~~~~~~Al~l~P~~--~~a~~~Lg~~~~~~g~~~~A~~~~~~al~l~P~~~----~~~~~lg 98 (568) T 2vsy_A 25 AWLMLADAELGMGDTTAGEMAVQRGLALHPGH--PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP----GIALWLG 98 (568) T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH----HHHHHHH T ss_conf 99999999998789999999999999829899--99999999999985999999999999997199999----9999999 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHH Q ss_conf 96302699899999975311464235689999999999988998---999999999983 Q gi|254780421|r 135 SILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKV---QKAKTIFEELAK 190 (218) Q Consensus 135 ~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~---~~A~~~y~~i~~ 190 (218) .++.+.+++++|+..+.....-. |-...+...++......+|. +++...+.+.+. T Consensus 99 ~~~~~~g~~~~A~~~~~~Al~l~-P~~~~~~~~l~~~~~~l~dw~~~~~~~~~l~~~i~ 156 (568) T 2vsy_A 99 HALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568) T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH T ss_pred HHHHHCCCHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH T ss_conf 99998297123357777652238-86237788888777764022103567778767765 No 74 >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, cytoplasm, plasmid, virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A Probab=97.91 E-value=0.00062 Score=41.39 Aligned_cols=99 Identities=11% Similarity=0.132 Sum_probs=81.6 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 99999999999841387666999999973125520699999999999951100577899999987312689578999999 Q gi|254780421|r 52 IVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATL 131 (218) Q Consensus 52 ~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l 131 (218) .....|..+....+.+++++|+..|++++...|.. ..+.+.++.++...|++++|+..|..++...+.++ .+.+ T Consensus 35 ~~~~l~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~ 108 (151) T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN--VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY----TPVF 108 (151) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC----HHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHH T ss_conf 79999999999998699999999999999878999--99999999999985986899999999998555786----9998 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCCC Q ss_conf 9999630269989999997531146 Q gi|254780421|r 132 QAASILVDTSSYEEISKILQKLSEP 156 (218) Q Consensus 132 ~la~~~~~~~~~d~a~~~l~~~~~~ 156 (218) .++.++...+++++|+..++..... T Consensus 109 ~~g~~~~~~g~~~~A~~~~~~ai~~ 133 (151) T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQH 133 (151) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHC T ss_conf 7779999878999999999999863 No 75 >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Probab=97.91 E-value=0.00024 Score=43.96 Aligned_cols=111 Identities=14% Similarity=0.082 Sum_probs=81.5 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCH-------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC Q ss_conf 99999999999511005778999999873126895-------------78999999999963026998999999753114 Q gi|254780421|r 89 PLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPL-------------AVRYAATLQAASILVDTSSYEEISKILQKLSE 155 (218) Q Consensus 89 ~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~-------------~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~ 155 (218) .......+..++..|++.+|+..|...+.-.+.+. .++....+.++..++..+++++++..+..... T Consensus 179 a~~~k~~GN~~fk~g~y~~Ai~~Y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~a~~~~~~~~~~~Ai~~~~kal~ 258 (338) T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338) T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 99999999999985999999999799997486325556555589999999999999999999983566666889998642 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 642356899999999999889989999999999835589989999 Q gi|254780421|r 156 PSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGIST 200 (218) Q Consensus 156 ~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ 200 (218) . .|....++..+|.++...|++++|++.|++++.-.+....++. T Consensus 259 ~-~p~~~ka~~~~g~a~~~lg~~~~A~~~~~kAl~ldP~n~~~~~ 302 (338) T 2if4_A 259 E-EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRR 302 (338) T ss_dssp H-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------- T ss_pred C-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 2-8752899999999999878999999999999983989999999 No 76 >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Probab=97.89 E-value=0.0011 Score=39.82 Aligned_cols=156 Identities=17% Similarity=0.111 Sum_probs=98.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHCCHHHHHHHHH Q ss_conf 999999999999999999999999984-138766699999997312----552069999999999995110057789999 Q gi|254780421|r 38 WFYLFDGSHEKKKNIVGENFAQALELF-NSNKLDDARSSFEKILSQ----DNKLYNPLSNMYIASILVAKGDTKNAAEIF 112 (218) Q Consensus 38 ~~~~~~~~q~~~~~~as~~y~~al~~~-~~~~~~~A~~~l~~l~~~----~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l 112 (218) ++.++......+.+.+.+.|..+...+ ..+++++|+..+.+-.+- ++..-...+...++.++...|++++|+..+ T Consensus 21 ~~~~~~~~~~~~ye~A~~~y~~aa~~f~~~k~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~~~~y~~~~~~~~A~~~~ 100 (292) T 1qqe_A 21 FMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292) T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 88885389621199999999999999998789999999999999999886997999999999999998769879999999 Q ss_pred HHHHHHCC--CCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHCC----CC-CHHHHHHHHHHHHHHHHCCCHHHHHHH Q ss_conf 99873126--895789999999999630-26998999999753114----64-235689999999999988998999999 Q gi|254780421|r 113 LKVANDDL--APLAVRYAATLQAASILV-DTSSYEEISKILQKLSE----PS-NPMHQFANEILGISALKFGKVQKAKTI 184 (218) Q Consensus 113 ~~i~~~~~--~~~~~~~lA~l~la~~~~-~~~~~d~a~~~l~~~~~----~~-~~~~~~a~ellg~~~~~~Gd~~~A~~~ 184 (218) ...++-.. ........+...++.++. ..+++++|+..+..... .+ ..........+|.++...|++++|.+. T Consensus 101 ~~a~~~~~~~g~~~~a~~~~~~la~~~~~~~~~~~~A~~~y~kA~~~~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~ 180 (292) T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292) T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999877537416899999999899998721099999999999987553688898999999999999984369999999 Q ss_pred HHHHHHCCC Q ss_conf 999983558 Q gi|254780421|r 185 FEELAKDNN 193 (218) Q Consensus 185 y~~i~~~~~ 193 (218) |++++.... T Consensus 181 y~~a~~~~~ 189 (292) T 1qqe_A 181 YSKLIKSSM 189 (292) T ss_dssp HHHHHHTTS T ss_pred HHHHHHHHH T ss_conf 999998734 No 77 >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint center for structural genomics, JCSG; 2.71A {Bacillus halodurans} Probab=97.86 E-value=6.4e-05 Score=47.51 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=71.0 Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHH Q ss_conf 00577899999987312689578999999999963026998999999753114642356899999999999889989999 Q gi|254780421|r 103 GDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAK 182 (218) Q Consensus 103 g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~ 182 (218) |+.++|+..|+..++-...++ -...+.+.++..+...+++++|+..+.....-. |-...+...+|.++...|++++|. T Consensus 4 G~~~eAi~~y~kAl~~~~~~~-~~~~a~~~lg~~y~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~eA~ 81 (117) T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGK-DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117) T ss_dssp ---CCCHHHHHHHHSSCCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH T ss_pred CCHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHH T ss_conf 599999999999983588996-499999999999999499999999998778507-898999998999985612599999 Q ss_pred HHHHHHHHCCCCCHHHHH Q ss_conf 999999835589989999 Q gi|254780421|r 183 TIFEELAKDNNSPFGIST 200 (218) Q Consensus 183 ~~y~~i~~~~~~p~~~r~ 200 (218) +.+++++...+..+.+.. T Consensus 82 ~~~~~~~~~~~~~~~i~~ 99 (117) T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117) T ss_dssp HHHHHHHHHHCCCHHHHH T ss_pred HHHHHHHHHCCCCHHHHH T ss_conf 999999873899889999 No 78 >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Probab=97.83 E-value=0.00049 Score=42.06 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=81.7 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 99999999999841387666999999973125520699999999999951100577899999987312689578999999 Q gi|254780421|r 52 IVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATL 131 (218) Q Consensus 52 ~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l 131 (218) .....|..+......+++++|+..|+..++..+.. ..+.+.+|.++...|++++|+..|+.++...+.++ -+.+ T Consensus 17 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a~~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~ 90 (142) T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD--ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP----RFPF 90 (142) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT----HHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHH T ss_conf 59999999999998699999999999999839987--99999973999994898999999999987443889----9999 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCC Q ss_conf 999963026998999999753114 Q gi|254780421|r 132 QAASILVDTSSYEEISKILQKLSE 155 (218) Q Consensus 132 ~la~~~~~~~~~d~a~~~l~~~~~ 155 (218) +++.+++..+++++|.+.+..... T Consensus 91 ~la~~~~~~~~~~~A~~~~~~al~ 114 (142) T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARA 114 (142) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 767999885899999999999987 No 79 >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Probab=97.82 E-value=0.00017 Score=44.96 Aligned_cols=102 Identities=10% Similarity=0.025 Sum_probs=83.5 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 99999999984138766699999997312552069999999999995110057789999998731268957899999999 Q gi|254780421|r 54 GENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQA 133 (218) Q Consensus 54 s~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~l 133 (218) ...|..+......+++++|+..|++++...|+. ..+...+|.++...|++++|+..|+.++.-.+.+. -+.+.+ T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~~i~~~P~~--~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l 91 (121) T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI----AVHAAL 91 (121) T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH----HHHHHH T ss_conf 999999999999699999999999999869987--99999999999984880244688899999798989----999999 Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCHHH Q ss_conf 9963026998999999753114642356 Q gi|254780421|r 134 ASILVDTSSYEEISKILQKLSEPSNPMH 161 (218) Q Consensus 134 a~~~~~~~~~d~a~~~l~~~~~~~~~~~ 161 (218) +.++...+++++|++.+.....-.+.|. T Consensus 92 a~~~~~~g~~~~A~~~~~~~l~~~P~~~ 119 (121) T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLSQPQYE 119 (121) T ss_dssp HHHHHHHHHHHHHHHHHHHHHC------ T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCC T ss_conf 9999995999999999999998684987 No 80 >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Probab=97.79 E-value=0.00094 Score=40.30 Aligned_cols=114 Identities=16% Similarity=0.046 Sum_probs=87.8 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 99999999999841387666999999973125520699999999999951100577899999987312689578999999 Q gi|254780421|r 52 IVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATL 131 (218) Q Consensus 52 ~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l 131 (218) ++......+...+..+++++|+..+.+.++..|.. +.+.+.+|.++...|++++|+..+...+.-.+.+. .+.+ T Consensus 3 ~~~~L~~~G~~~~~~g~y~~A~~~~~~ai~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~ 76 (118) T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN--HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG----KGYS 76 (118) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCH----HHHH T ss_conf 89999999999999699999999999999868998--99999999999984883200068999998698979----9999 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 99996302699899999975311464235689999999999 Q gi|254780421|r 132 QAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISA 172 (218) Q Consensus 132 ~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~ 172 (218) +++.++...+++++|+..+.....-. |-...+...++.+. T Consensus 77 ~lg~~~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~l~ 116 (118) T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNME 116 (118) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH T ss_conf 99999999499999999999999719-89899999999675 No 81 >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus HB27} Probab=97.78 E-value=0.0001 Score=46.27 Aligned_cols=144 Identities=16% Similarity=0.123 Sum_probs=96.6 Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHH- Q ss_conf 999998413876669999999731255206999999999999511005778999999873126895-789999999999- Q gi|254780421|r 58 AQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPL-AVRYAATLQAAS- 135 (218) Q Consensus 58 ~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~-~~~~lA~l~la~- 135 (218) .-+....+.|++++|+..|++.++..|.. +.+.+.+|.++...|++++|+..|+.+++..+... ....++...... T Consensus 10 ~lG~~~~~~g~~~eA~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 87 (217) T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALKENPQD--PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALY 87 (217) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSSSC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHH T ss_conf 99999998789999999999999868999--9999999999998699999999999876038504788750222210012 Q ss_pred -----HHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH Q ss_conf -----630269989999997531146423568999999999998899899999999998355899899999999 Q gi|254780421|r 136 -----ILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQM 204 (218) Q Consensus 136 -----~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~ 204 (218) .....+.+++|+..+.....- .|-...+...+|.++...+++++|...|++++...+.|.....++.. T Consensus 88 ~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~lg~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~lg~~ 160 (217) T 2pl2_A 88 RQAEDRERGKGYLEQALSVLKDAERV-NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL 160 (217) T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 34788998715399999999888744-99869999999999999689999999999998179984699998588 No 82 >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Probab=97.77 E-value=0.0018 Score=38.61 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=38.6 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC--CCHHHHHHHHHH Q ss_conf 99998413876669999999731----255206999999999999511005778999999873126--895789999999 Q gi|254780421|r 59 QALELFNSNKLDDARSSFEKILS----QDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDL--APLAVRYAATLQ 132 (218) Q Consensus 59 ~al~~~~~~~~~~A~~~l~~l~~----~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~--~~~~~~~lA~l~ 132 (218) .+......++.+.++..+++-.. .+.+.....+...++.++...|++++|+..|+..+.-.. .+.....-+.+. T Consensus 121 ~~~~~~~~~~~~~a~~~y~~A~~i~~~~~~~~~~~~~~~~la~~~~~~~~y~eA~~~~~~a~~i~~~~~~~~~~~~~~~~ 200 (307) T 2ifu_A 121 RAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307) T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 78899871459999999999999998759964799999748899887168999999999999999986890999999997 Q ss_pred HHHHHHCCCCHHHHHHHHHHH Q ss_conf 999630269989999997531 Q gi|254780421|r 133 AASILVDTSSYEEISKILQKL 153 (218) Q Consensus 133 la~~~~~~~~~d~a~~~l~~~ 153 (218) ++.+++..+++..|...+... T Consensus 201 l~~~~l~~gd~~~A~~~~~~a 221 (307) T 2ifu_A 201 QVLVQLHRADYVAAQKCVRES 221 (307) T ss_dssp HHHHHHHTTCHHHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHH T ss_conf 999999868999999999998 No 83 >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Probab=97.74 E-value=0.0019 Score=38.33 Aligned_cols=130 Identities=15% Similarity=0.056 Sum_probs=85.6 Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 984138766699999997312552069999999999995110057------78999999873126895789999999999 Q gi|254780421|r 62 ELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTK------NAAEIFLKVANDDLAPLAVRYAATLQAAS 135 (218) Q Consensus 62 ~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~------~A~~~l~~i~~~~~~~~~~~~lA~l~la~ 135 (218) ..........+...+.+.....++.+. +....+..+...|+.. ++...+.........+..........++. T Consensus 155 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (306) T 3dra_A 155 DTFDLHNDAKELSFVDKVIDTDLKNNS--AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHER 232 (306) T ss_dssp HHTTCTTCHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH T ss_conf 334121299999999998744984089--999999999970205432447899999877877483557999999999999 Q ss_pred HHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC Q ss_conf 63026998999999753114642356899999999999889989999999999835589 Q gi|254780421|r 136 ILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNS 194 (218) Q Consensus 136 ~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~ 194 (218) .....+++++++..+...... .|-...++..+|.++..+|++++|++.|+.++...|+ T Consensus 233 ~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~y~~~g~~~eA~~~y~~l~~~~DP 290 (306) T 3dra_A 233 FDRSITQLEEFSLQFVDLEKD-QVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNP 290 (306) T ss_dssp TTCCGGGGHHHHHTTEEGGGT-EESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCG T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC T ss_conf 988764799999999999864-9998999999999999879999999999999873592 No 84 >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Probab=97.71 E-value=0.0021 Score=38.09 Aligned_cols=121 Identities=8% Similarity=0.041 Sum_probs=40.4 Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHCCCCH Q ss_conf 387666999999973125520699999999999951100577899999987312689--578999999999963026998 Q gi|254780421|r 66 SNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAP--LAVRYAATLQAASILVDTSSY 143 (218) Q Consensus 66 ~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~--~~~~~lA~l~la~~~~~~~~~ 143 (218) .++.+.+...++......|+. ...+..+..+...|++++|...|...+...... ........+..+..+...+++ T Consensus 226 ~~~~~~a~~~~~~a~~~~p~~---~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (493) T 2uy1_A 226 IGQKEKAKKVVERGIEMSDGM---FLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGL 302 (493) T ss_dssp TTCHHHHHHHHHHHHHHCCSS---HHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCH T ss_pred CCHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCH T ss_conf 230889999888875259968---99999999999874399999999999986730010131089999999999987998 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 99999975311464235689999999999988998999999999983 Q gi|254780421|r 144 EEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218) Q Consensus 144 d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218) +++...+....... |-........+..+...|++++|++.|++++. T Consensus 303 ~~a~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 348 (493) T 2uy1_A 303 ELFRKLFIELGNEG-VGPHVFIYCAFIEYYATGSRATPYNIFSSGLL 348 (493) T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99999999997749-98899999999998754489999999999987 No 85 >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Probab=97.71 E-value=0.0013 Score=39.35 Aligned_cols=122 Identities=15% Similarity=0.026 Sum_probs=64.0 Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 38766699999997312552069999999999995110057789999998731268957899999999996302699899 Q gi|254780421|r 66 SNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEE 145 (218) Q Consensus 66 ~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~ 145 (218) .+..++|...+.......+.. .....+..+......|+.+.|...+...+.....+.. ...+..+..+...+++++ T Consensus 299 ~~~~~~a~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 374 (530) T 2ooe_A 299 KLFSDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT---LVYIQYMKFARRAEGIKS 374 (530) T ss_dssp HHHHHHHHHHHHHHTTTTCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH---HHHHHHHHHHHHHHHHHH T ss_pred HHCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHHHCCCHHH T ss_conf 303388999998888505300-1789999999986302189999999987762661458---999999999998066899 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHCC Q ss_conf 99997531146423568999999999-998899899999999998355 Q gi|254780421|r 146 ISKILQKLSEPSNPMHQFANEILGIS-ALKFGKVQKAKTIFEELAKDN 192 (218) Q Consensus 146 a~~~l~~~~~~~~~~~~~a~ellg~~-~~~~Gd~~~A~~~y~~i~~~~ 192 (218) |+..+....... |........+|.+ +...|+.+.|++.|++++... T Consensus 375 A~~~~~~al~~~-p~~~~~~~~~a~l~~~~~~~~~~A~~~~~~al~~~ 421 (530) T 2ooe_A 375 GRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530) T ss_dssp HHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC T ss_conf 999999999848-99799999999999886547999999999998649 No 86 >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Probab=97.71 E-value=0.0013 Score=39.32 Aligned_cols=25 Identities=8% Similarity=-0.049 Sum_probs=9.2 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 9999999998899899999999998 Q gi|254780421|r 165 NEILGISALKFGKVQKAKTIFEELA 189 (218) Q Consensus 165 ~ellg~~~~~~Gd~~~A~~~y~~i~ 189 (218) ...+|.++.+.|++++|.+.|++++ T Consensus 203 ~~~~~~~~~~~~~~~~al~~~~~~i 227 (382) T 2h6f_A 203 WQHRQWVIQEFKLWDNELQYVDQLL 227 (382) T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8898999997231689999999999 No 87 >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Probab=97.66 E-value=0.00039 Score=42.63 Aligned_cols=80 Identities=11% Similarity=0.106 Sum_probs=50.1 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHH Q ss_conf 77899999987312689578999999999963026998999999753114642356899999999999889989999999 Q gi|254780421|r 106 KNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIF 185 (218) Q Consensus 106 ~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y 185 (218) +++++.|+.++...+.+. .+.+.+|.+++..+++++|+..+...... .|....++..+|.++...|++++|++.| T Consensus 2 q~~~e~le~~l~~~pd~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 76 (115) T 2kat_A 2 QAITERLEAMLAQGTDNM----LLRFTLGKTYAEHEQFDAALPHLRAALDF-DPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115) T ss_dssp CCHHHHHHHHHTTTCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 899999999987299989----99999999999859999999999997887-4305999999999999978999999999 Q ss_pred HHHHH Q ss_conf 99983 Q gi|254780421|r 186 EELAK 190 (218) Q Consensus 186 ~~i~~ 190 (218) ++++. T Consensus 77 ~~al~ 81 (115) T 2kat_A 77 ESGLA 81 (115) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99996 No 88 >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Probab=97.61 E-value=4.8e-05 Score=48.29 Aligned_cols=124 Identities=10% Similarity=-0.009 Sum_probs=83.8 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 99999999841387666999999973125520699999999999951100577899999987312689578999999999 Q gi|254780421|r 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAA 134 (218) Q Consensus 55 ~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la 134 (218) +....+....+.+++++|+..+++.++..+.. ..+.+.+|.++...|++++|+..++.+++-.+... -|.++++ T Consensus 8 ~lk~~Gn~~~~~g~y~~Ai~~y~kal~~~p~~--~~~~~~la~~~~~l~~~~~Ai~~~~~al~l~p~~~----~a~~~lg 81 (477) T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSN--AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI----KGYYRRA 81 (477) T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH----HHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHH T ss_conf 99999999998589999999999999809998--99999999999983999999999999998499989----9999999 Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH--HHHHHCCCHHHHHHHH Q ss_conf 96302699899999975311464235689999999--9999889989999999 Q gi|254780421|r 135 SILVDTSSYEEISKILQKLSEPSNPMHQFANEILG--ISALKFGKVQKAKTIF 185 (218) Q Consensus 135 ~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg--~~~~~~Gd~~~A~~~y 185 (218) .++...+++++|+..+.....-. |....+...++ ..++++.++++|.... T Consensus 82 ~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~e~A~~~~ 133 (477) T 1wao_1 82 ASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGD 133 (477) T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC---- T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99998599999999999989868-89799999999999998888888755545 No 89 >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A Probab=97.59 E-value=0.0017 Score=38.62 Aligned_cols=109 Identities=15% Similarity=0.028 Sum_probs=77.1 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC-----------CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCH Q ss_conf 9999999995110057789999998731268-----------95789999999999630269989999997531146423 Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLA-----------PLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNP 159 (218) Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~-----------~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~ 159 (218) ..-..+..++..|++..|+..|...+.--.. ...+.....+.++..++..+++++|+..+.....-+ | T Consensus 270 ~~k~~Gn~~fk~g~y~~A~~~Y~kAl~~l~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~kl~~~~~A~~~~~~al~~d-p 348 (457) T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S 348 (457) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-C T ss_conf 887667899976899999999999999987642676555521337899999999999998589999999999999878-8 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 56899999999999889989999999999835589989999 Q gi|254780421|r 160 MHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGIST 200 (218) Q Consensus 160 ~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ 200 (218) -..-++..+|.++...|++++|+..|++++.-.+....++. T Consensus 349 ~n~ka~~~~g~~~~~~~~~e~A~~~~~kal~l~P~n~~~~~ 389 (457) T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389 (457) T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHH T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 77699999999999868999999999999985899899999 No 90 >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Probab=97.58 E-value=0.00098 Score=40.17 Aligned_cols=139 Identities=18% Similarity=0.113 Sum_probs=90.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC----C----------HHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 9999999999999999984138766699999997312552----0----------6999999999999511005778999 Q gi|254780421|r 46 HEKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNK----L----------YNPLSNMYIASILVAKGDTKNAAEI 111 (218) Q Consensus 46 q~~~~~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~----~----------ya~lA~l~lA~~~~~~g~~~~A~~~ 111 (218) .+.+...+......+...+..+++++|+..+.+.+...+. . ......+.+|.++...|++++|+.. T Consensus 31 ~~e~~~~a~~lke~Gn~~fk~g~y~~Ai~~Y~kAL~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~y~~~~~~~~Ai~~ 110 (198) T 2fbn_A 31 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH 110 (198) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHH T ss_conf 89999999999999999998699999999999998538343101045778762315899999999999986899999999 Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHH Q ss_conf 99987312689578999999999963026998999999753114642356899999999999889989-9999999998 Q gi|254780421|r 112 FLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQ-KAKTIFEELA 189 (218) Q Consensus 112 l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~-~A~~~y~~i~ 189 (218) +..++.-.+.. . -|.++.+.++...+++++|+..+.....-+ |-...+...++.+..+..... .-+..|..+. T Consensus 111 ~~~aL~l~p~~--~--~a~~~~g~~~~~lg~~~~A~~~~~kal~l~-P~n~~~~~~l~~~~~~~~~~~~~ek~~y~~~F 184 (198) T 2fbn_A 111 ASKVLKIDKNN--V--KALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198) T ss_dssp HHHHHHHSTTC--H--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC---------- T ss_pred HHHHHHHCCCC--H--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999869886--9--999999999999779999999999999729-89999999999999999999999999999887 No 91 >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Probab=97.56 E-value=0.0016 Score=38.79 Aligned_cols=93 Identities=12% Similarity=-0.020 Sum_probs=75.7 Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 99999951100577899999987312689578999999999963026998999999753114642356899999999999 Q gi|254780421|r 94 YIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISAL 173 (218) Q Consensus 94 ~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~ 173 (218) ..+..++.+|++++|+..|...+.-.+... .+.+.+|..+...+++++|+..+.....-+ |..+.++..+|.++. T Consensus 9 ~~Gn~~~~~~~y~~Ai~~y~~Ai~~~p~~~----~~~~n~a~~y~~l~~~~~A~~~~~~al~l~-p~~~~a~~~~g~~~~ 83 (281) T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281) T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH T ss_conf 999999986999999999999998589989----999999999998599899999999999719-857899999999999 Q ss_pred HCCCHHHHHHHHHHHHHC Q ss_conf 889989999999999835 Q gi|254780421|r 174 KFGKVQKAKTIFEELAKD 191 (218) Q Consensus 174 ~~Gd~~~A~~~y~~i~~~ 191 (218) ..|++++|.+.|++++.. T Consensus 84 ~~~~~~~A~~~~~kal~l 101 (281) T 2c2l_A 84 EMESYDEAIANLQRAYSL 101 (281) T ss_dssp HTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 877657888999999874 No 92 >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Probab=97.54 E-value=0.0038 Score=36.55 Aligned_cols=136 Identities=9% Similarity=0.057 Sum_probs=98.0 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC------CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC----CCCHH Q ss_conf 99999999841387666999999973125------520699999999999951100577899999987312----68957 Q gi|254780421|r 55 ENFAQALELFNSNKLDDARSSFEKILSQD------NKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDD----LAPLA 124 (218) Q Consensus 55 ~~y~~al~~~~~~~~~~A~~~l~~l~~~~------~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~----~~~~~ 124 (218) ..+..+......+++++++..+++.++.. .+.+-.-..-.++.++...|++++|...++..++-. ..+.+ T Consensus 311 ~~~e~~~~~~~~~~~~ea~~l~~~~L~~~~~il~~~h~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h~ 390 (490) T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490) T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 66787876663367788899999999998750699627789999999999998779889999999999999997699998 Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHH-------HHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 899999999996302699899999975-------311464235689999999999988998999999999983 Q gi|254780421|r 125 VRYAATLQAASILVDTSSYEEISKILQ-------KLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218) Q Consensus 125 ~~~lA~l~la~~~~~~~~~d~a~~~l~-------~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218) ....+...+|.++...+++++|+..+. ...+++.|........++..+...+++.+|...|+++.+ T Consensus 391 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kAl~i~~~~~G~~hp~~~~l~~~l~~~~~~l~~~~~a~~~~~~~~~ 463 (490) T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490) T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999987898999999999999999974999842999999999999998657888999999999 No 93 >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A Probab=97.52 E-value=0.00088 Score=40.47 Aligned_cols=108 Identities=14% Similarity=0.097 Sum_probs=80.6 Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC Q ss_conf 8413876669999999731255206999999999999511---0057789999998731268957899999999996302 Q gi|254780421|r 63 LFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAK---GDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVD 139 (218) Q Consensus 63 ~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~---g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~ 139 (218) ....++++.|...+++.+...+.. +-++|.+|..++.. +++.+|+..|+.++.....| ...-+.+.+|..+.. T Consensus 11 ~~~~~dl~kAe~~y~~al~~~p~~--~~~~~n~a~~L~~~~~~~d~~~Ai~~l~~~l~~~~~p--~~~~~~~~La~~y~~ 86 (126) T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYR 86 (126) T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCC--HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH--HHHHHHHHHHHHHHH T ss_pred HCCHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHH T ss_conf 528899999999999997419999--9999999999998598778999999999987504799--779999999999998 Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 699899999975311464235689999999999988 Q gi|254780421|r 140 TSSYEEISKILQKLSEPSNPMHQFANEILGISALKF 175 (218) Q Consensus 140 ~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~ 175 (218) .+++++|+..+.....-+ |-...|+.+++.++-+. T Consensus 87 ~g~~~~A~~~~~~~L~~~-P~~~~A~~l~~~I~~~~ 121 (126) T 1nzn_A 87 LKEYEKALKYVRGLLQTE-PQNNQAKELERLIDKAM 121 (126) T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH T ss_conf 399599999999999879-19699999999999998 No 94 >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Probab=97.52 E-value=0.0039 Score=36.43 Aligned_cols=113 Identities=14% Similarity=0.064 Sum_probs=81.2 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCH-----------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHH Q ss_conf 99999999511005778999999873126895-----------7899999999996302699899999975311464235 Q gi|254780421|r 92 NMYIASILVAKGDTKNAAEIFLKVANDDLAPL-----------AVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPM 160 (218) Q Consensus 92 ~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~-----------~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~ 160 (218) .-..+..++..|++..|+..|...+.-...+. .++..+.+.++..++..+++++|+..+.....-+ |. T Consensus 150 ~ke~Gn~~f~~g~y~~Ai~~Y~kAl~~~~~~~~~~~~~~~~~~~l~~~~~~Nla~~y~k~~~~~~A~~~~~~al~~~-p~ 228 (336) T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SN 228 (336) T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CC T ss_conf 99999999985999999999999998574443123466765537899999889999999388899999999987634-12 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 689999999999988998999999999983558998999999999 Q gi|254780421|r 161 HQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMI 205 (218) Q Consensus 161 ~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~ 205 (218) ...++..+|.++...|++++|+..|++++.-.+....++...... T Consensus 229 n~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 273 (336) T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336) T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH T ss_conf 379999999999986899999999999998499999999999999 No 95 >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=97.50 E-value=0.0041 Score=36.35 Aligned_cols=97 Identities=16% Similarity=0.118 Sum_probs=75.6 Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 99999999841387666999999973125520-69999999999995110057789999998731268957899999999 Q gi|254780421|r 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKL-YNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQA 133 (218) Q Consensus 55 ~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~-ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~l 133 (218) ......-..+..+++++|+..|.+.++-.++. -.....+.++.+++..|++++|+..++.++.-.+.. .. +.+++ T Consensus 30 ~l~~~Gn~~f~~~~y~~Ai~~y~kAl~l~~~~~~~~~~~~n~~~~~~~~~~~~~A~~~~~~ai~~~p~~--~~--~~~~l 105 (148) T 2dba_A 30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VK--ALYRR 105 (148) T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HH--HHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--HH--HHHHH T ss_conf 999999999996899999999999987454877799999999999998568889999899999878998--99--99999 Q ss_pred HHHHHCCCCHHHHHHHHHHHCC Q ss_conf 9963026998999999753114 Q gi|254780421|r 134 ASILVDTSSYEEISKILQKLSE 155 (218) Q Consensus 134 a~~~~~~~~~d~a~~~l~~~~~ 155 (218) +.++...+++++|+..+..... T Consensus 106 g~~~~~~~~~~~A~~~~~kal~ 127 (148) T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148) T ss_dssp HHHHHHHTCHHHHHHHHHHHHH T ss_pred HHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999987899999999999998 No 96 >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Probab=97.49 E-value=0.00062 Score=41.41 Aligned_cols=96 Identities=13% Similarity=0.023 Sum_probs=72.2 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCCHHHHHHHHHHH Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114-64235689999999 Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSE-PSNPMHQFANEILG 169 (218) Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~-~~~~~~~~a~ellg 169 (218) +.+.++.++...|++++|+..|+.++.-.+.... +...++.++...+++++|+..+..... ..+|....+...+| T Consensus 8 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~g~~~~~~~~~~~A~~~~~~Al~l~~~~~~~~a~~~~g 83 (112) T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK----YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112) T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH T ss_conf 9999999999969999999999999871955599----999888999985108999999999985499955699999999 Q ss_pred HHHHH-CCCHHHHHHHHHHHHH Q ss_conf 99998-8998999999999983 Q gi|254780421|r 170 ISALK-FGKVQKAKTIFEELAK 190 (218) Q Consensus 170 ~~~~~-~Gd~~~A~~~y~~i~~ 190 (218) .++.. +|+..+|...|.+..- T Consensus 84 ~~l~~l~~~~~ea~~~~~~aaL 105 (112) T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112) T ss_dssp HHHTTCSSCSHHHHHHHHHHGG T ss_pred HHHHHHCCCHHHHHHHHHHHHC T ss_conf 9999987999999999999756 No 97 >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Probab=97.45 E-value=0.00091 Score=40.37 Aligned_cols=79 Identities=10% Similarity=-0.019 Sum_probs=64.8 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH Q ss_conf 66999999973125520699999999999951100577899999987312689578999999999963026998999999 Q gi|254780421|r 70 DDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKI 149 (218) Q Consensus 70 ~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~ 149 (218) +.++..|++++...|+. +.+.+.+|.+++..|++++|+..|+..+...+... .+.+.++..+...+++++|+.. T Consensus 2 q~~~e~le~~l~~~pd~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~ 75 (115) T 2kat_A 2 QAITERLEAMLAQGTDN--MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS----VAWKWLGKTLQGQGDRAGARQA 75 (115) T ss_dssp CCHHHHHHHHHTTTCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHCCCHHHHHHH T ss_conf 89999999998729998--99999999999985999999999999788743059----9999999999997899999999 Q ss_pred HHHHC Q ss_conf 75311 Q gi|254780421|r 150 LQKLS 154 (218) Q Consensus 150 l~~~~ 154 (218) +.... T Consensus 76 ~~~al 80 (115) T 2kat_A 76 WESGL 80 (115) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 98 >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Probab=97.42 E-value=0.0047 Score=35.99 Aligned_cols=96 Identities=11% Similarity=0.117 Sum_probs=39.0 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC-----HHHHHHH Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114642-----3568999 Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSN-----PMHQFAN 165 (218) Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~-----~~~~~a~ 165 (218) +.+..+......|+.+.|...+...+...+.+. ..+..+.++...++++++...+........ ....... T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~-----~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~ 289 (493) T 2uy1_A 215 VYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMF-----LSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLR 289 (493) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH-----HHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHH T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHH T ss_conf 999999998752308899998888752599689-----999999999987439999999999998673001013108999 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf 99999999889989999999999835 Q gi|254780421|r 166 EILGISALKFGKVQKAKTIFEELAKD 191 (218) Q Consensus 166 ellg~~~~~~Gd~~~A~~~y~~i~~~ 191 (218) ...|..+.+.|+.++|++.|++++.. T Consensus 290 ~~~~~~~~~~~~~~~a~~~~~~a~~~ 315 (493) T 2uy1_A 290 INHLNYVLKKRGLELFRKLFIELGNE 315 (493) T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHTTS T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 99999999879989999999999774 No 99 >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Probab=97.39 E-value=0.0038 Score=36.50 Aligned_cols=67 Identities=18% Similarity=0.167 Sum_probs=42.9 Q ss_pred HHHHHHHHHHCCC---CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC Q ss_conf 9999999630269---989999997531146423568999999999998899899999999998355899 Q gi|254780421|r 129 ATLQAASILVDTS---SYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSP 195 (218) Q Consensus 129 A~l~la~~~~~~~---~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p 195 (218) +++..+..+.... ++++|+..+......+++....++..+|.+|.+.|++++|++.|++++.-.+.. T Consensus 41 ~~f~~a~~~~~s~~~~~~~~Ai~~l~~~l~~~p~~~~~~~y~Lg~~y~~lg~y~~A~~~~~~aL~l~P~n 110 (144) T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144) T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC T ss_conf 9999999999859856899999999998721799899999999999999398899999999888349894 No 100 >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Probab=97.36 E-value=0.00073 Score=40.96 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=23.3 Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH Q ss_conf 99984138766699999997312552069999999999995110057789999998731 Q gi|254780421|r 60 ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVAND 118 (218) Q Consensus 60 al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~ 118 (218) +..+.+.|++++|+..+++.++..|+. .+.+.+.++.++...|++++|+..|+.++.- T Consensus 7 ~~~L~~qG~~~~Ai~~~~~al~~~P~~-~~~a~~~lG~~~~~~g~~~~Ai~~~~kal~i 64 (99) T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99) T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCC-HHHHHHHHCHHHCCCCCHHHHHHHHHHHHHH T ss_conf 999999689999999999998728988-9999998570310248799999999999984 No 101 >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Probab=97.26 E-value=0.0081 Score=34.50 Aligned_cols=117 Identities=12% Similarity=0.080 Sum_probs=68.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 99999999999999999841387666999999973125520699999999999951100577899999987312689578 Q gi|254780421|r 46 HEKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAV 125 (218) Q Consensus 46 q~~~~~~as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~ 125 (218) +..+..+|-..|..++......... ... ... ..-......+.+.+|..++..|++++|+..++.+++-.+.. . T Consensus 235 k~g~y~~Ai~~Y~kAL~~l~~~~~~--~~~-~~~--~~~~~~~~~~~~Nla~~~~kl~~y~~Ai~~~~kaL~ldp~~--~ 307 (370) T 1ihg_A 235 KSQNWEMAIKKYTKVLRYVEGSRAA--AED-ADG--AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN--T 307 (370) T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHH--SCH-HHH--GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC--H T ss_pred HCCCHHHHHHHHHHHHHCCHHCCHH--HCC-HHH--HHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC--H T ss_conf 8599999999999999513002100--000-555--54191169999999999998488899999999999849998--9 Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 99999999996302699899999975311464235689999999999 Q gi|254780421|r 126 RYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISA 172 (218) Q Consensus 126 ~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~ 172 (218) + |.++++..+...+++++|+..+.....-. |-...+...++.+. T Consensus 308 k--a~~~~g~a~~~lg~~e~A~~~~~kal~l~-P~n~~~~~~l~~~~ 351 (370) T 1ihg_A 308 K--ALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK 351 (370) T ss_dssp H--HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH T ss_pred H--HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH T ss_conf 9--99999999998699999999999999849-99899999999999 No 102 >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Probab=97.20 E-value=0.0039 Score=36.47 Aligned_cols=73 Identities=19% Similarity=0.124 Sum_probs=40.0 Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHH Q ss_conf 999999963026998999999753114642356899999999999889989999999999835-58998999999 Q gi|254780421|r 129 ATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD-NNSPFGISTRS 202 (218) Q Consensus 129 A~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~-~~~p~~~r~ra 202 (218) |-+.++.++...+++++|+..+....... |-...+...+|.++...|++++|+..|++++.- ++.+.....++ T Consensus 11 ay~~lg~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~P~~~~~~~~la 84 (91) T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 99999999999689999999998838607-504677623999999968999999999998475879799999999 No 103 >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3c72_A* Probab=97.20 E-value=0.0019 Score=38.46 Aligned_cols=63 Identities=13% Similarity=0.041 Sum_probs=40.1 Q ss_pred CCHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCCHHHHHHHH Q ss_conf 99899999975311--464235689999999999988998999999999983-5589989999999 Q gi|254780421|r 141 SSYEEISKILQKLS--EPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK-DNNSPFGISTRSQ 203 (218) Q Consensus 141 ~~~d~a~~~l~~~~--~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~-~~~~p~~~r~ra~ 203 (218) +.+++++..+.... .|..|....++-.+|.++.+.|++++|++.|++++. +|.-+..++.+.. T Consensus 252 ~~~~~a~~~~~~al~~~p~~~~~~~~l~~l~~~~~~~~~~~eA~~~~~kai~ldP~~~~y~~~l~~ 317 (331) T 3dss_A 252 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331) T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 669999999999998688997999999999999986489999999999999879886999999999 No 104 >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3c72_A* Probab=97.19 E-value=0.0097 Score=34.00 Aligned_cols=119 Identities=6% Similarity=-0.091 Sum_probs=45.3 Q ss_pred HHHHHHHHHHHHCCCCCHHHH---HHH-----HHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC Q ss_conf 669999999731255206999---999-----999999511005778999999873126895789999999999630269 Q gi|254780421|r 70 DDARSSFEKILSQDNKLYNPL---SNM-----YIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTS 141 (218) Q Consensus 70 ~~A~~~l~~l~~~~~~~ya~l---A~l-----~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~ 141 (218) ++|+..+++++...|..+..+ +.+ ..+......|.+++|+..+..++...+.+. ......+++....... T Consensus 47 ~eAl~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~ 124 (331) T 3dss_A 47 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY--GTWHHRCWLLSRLPEP 124 (331) T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHCSSC T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHCCC T ss_conf 99999999999888887899999999999704333568888789999999999998889989--9999975888760773 Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 9899999975311464235689999999999988998999999999983 Q gi|254780421|r 142 SYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218) Q Consensus 142 ~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218) +..+++..+......++..........+.+....+....|.+.|++++. T Consensus 125 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~i~ 173 (331) T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331) T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 5999999999997248345789988999999742462889999999998 No 105 >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 Probab=97.16 E-value=0.0033 Score=36.94 Aligned_cols=105 Identities=13% Similarity=0.087 Sum_probs=75.7 Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 41387666999999973125520699999999999951---100577899999987312689578999999999963026 Q gi|254780421|r 64 FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVA---KGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDT 140 (218) Q Consensus 64 ~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~---~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~ 140 (218) ++.+++.+|...+++.+...++. .-+.|.+|..+.. .++..+|+..|+..+.....| -..-+.+.++..+... T Consensus 9 ~~~edl~kAek~Y~~al~~~~~~--~~~~~n~a~~L~~s~~~~~~~~Ai~ll~~~l~~~~~~--~~~~~l~~La~~y~~~ 84 (152) T 1pc2_A 9 VSVEDLLKFEKKFQSEKAAGSVS--KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKE--EQRDYVFYLAVGNYRL 84 (152) T ss_dssp CCHHHHHHHHHHHHHHHHTTCCC--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHH--HHHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHHC T ss_conf 58999999999999987109999--9999999999987587778999999999987446994--1999999999999986 Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 998999999753114642356899999999999 Q gi|254780421|r 141 SSYEEISKILQKLSEPSNPMHQFANEILGISAL 173 (218) Q Consensus 141 ~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~ 173 (218) +++++|+..++....- .|...-|+.++..+.. T Consensus 85 g~~~~A~~~~~~aL~i-dP~n~qA~~l~~~I~~ 116 (152) T 1pc2_A 85 KEYEKALKYVRGLLQT-EPQNNQAKELERLIDK 116 (152) T ss_dssp SCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH T ss_conf 9999999999999976-9398999999999999 No 106 >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Probab=97.14 E-value=0.00069 Score=41.13 Aligned_cols=63 Identities=11% Similarity=0.045 Sum_probs=41.0 Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC Q ss_conf 9999999963026998999999753114642356899999999999889989999999999835 Q gi|254780421|r 128 AATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKD 191 (218) Q Consensus 128 lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~ 191 (218) .+.+.+|.++...+++++|+..+.....-+ |....++..+|.++..+|++++|++.|++++.. T Consensus 8 ~a~~~lg~~~~~~g~~~~A~~~~~~ai~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~y~~al~l 70 (100) T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100) T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC T ss_conf 999999999999599999999999877449-646999999999999968999999999999864 No 107 >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Probab=97.12 E-value=0.011 Score=33.57 Aligned_cols=100 Identities=13% Similarity=0.080 Sum_probs=74.1 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHCCCCHHHHHHHH-------HHHCCCCCH Q ss_conf 999999999511005778999999873126----895789999999999630269989999997-------531146423 Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDL----APLAVRYAATLQAASILVDTSSYEEISKIL-------QKLSEPSNP 159 (218) Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~----~~~~~~~lA~l~la~~~~~~~~~d~a~~~l-------~~~~~~~~~ 159 (218) -.+........+|++++|...++..++... .......-..-.++.++...+++++|+..+ .....++.| T Consensus 311 ~~~e~~~~~~~~~~~~ea~~l~~~~L~~~~~il~~~h~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~g~~h~ 390 (490) T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490) T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 66787876663367788899999999998750699627789999999999998779889999999999999997699998 Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 5689999999999988998999999999983 Q gi|254780421|r 160 MHQFANEILGISALKFGKVQKAKTIFEELAK 190 (218) Q Consensus 160 ~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~ 190 (218) ..+..+..+|.++..+|++++|.+.|++++. T Consensus 391 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kAl~ 421 (490) T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490) T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 9999999999999987898999999999999 No 108 >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint center for structural genomics, JCSG; 2.71A {Bacillus halodurans} Probab=97.09 E-value=0.0036 Score=36.71 Aligned_cols=87 Identities=15% Similarity=0.112 Sum_probs=66.6 Q ss_pred CCHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 876669999999731255-2069999999999995110057789999998731268957899999999996302699899 Q gi|254780421|r 67 NKLDDARSSFEKILSQDN-KLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEE 145 (218) Q Consensus 67 ~~~~~A~~~l~~l~~~~~-~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~ 145 (218) |+.++|+..+++.++..+ ++--..+.+.++.++...|++++|+..|+.++...+... .+.+.++..+...+++++ T Consensus 4 G~~~eAi~~y~kAl~~~~~~~~~~~a~~~lg~~y~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~e 79 (117) T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ----ALRVFYAMVLYNLGRYEQ 79 (117) T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHH T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHCCHHH T ss_conf 5999999999999835889964999999999999994999999999987785078989----999989999856125999 Q ss_pred HHHHHHHHCCCC Q ss_conf 999975311464 Q gi|254780421|r 146 ISKILQKLSEPS 157 (218) Q Consensus 146 a~~~l~~~~~~~ 157 (218) |+..+....... T Consensus 80 A~~~~~~~~~~~ 91 (117) T 3k9i_A 80 GVELLLKIIAET 91 (117) T ss_dssp HHHHHHHHHHHH T ss_pred HHHHHHHHHHHC T ss_conf 999999998738 No 109 >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, glycoprotein, metal-binding, oxidoreductase, iron, vitamin C, TPR repeat, dioxygenase; 2.03A {Homo sapiens} PDB: 1tjc_A Probab=97.07 E-value=0.0054 Score=35.61 Aligned_cols=91 Identities=8% Similarity=-0.037 Sum_probs=55.7 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114642356899999999 Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGI 170 (218) Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~ 170 (218) ..|.++..++..|++..|+..|+..+.-.+.++ ...+-....++.+|. T Consensus 7 dc~~lG~~~~~~~~y~~A~~~~~~Al~~~~~~~--------------------------------~~~~~~~~~l~~lg~ 54 (104) T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGE--------------------------------ISTIDKVSVLDYLSY 54 (104) T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--------------------------------CCSSCHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC--------------------------------CCCCCHHHHHHHHHH T ss_conf 999999999996899999999999987543567--------------------------------565529999999999 Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH Q ss_conf 9998899899999999998355899899999999999500340 Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANIIASD 213 (218) Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l~~~~ 213 (218) .+.+.|++++|++.|++++...+..+............|.-.. T Consensus 55 ~~~~~g~~~~A~~~~~~al~l~P~~~~a~~nl~~~~~~l~~~~ 97 (104) T 2v5f_A 55 AVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMAKEK 97 (104) T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC T ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 9998598379999999999759698999999999999985378 No 110 >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle, cell division, mitosis, TPR repeat; 2.50A {Homo sapiens} Probab=97.06 E-value=0.0017 Score=38.63 Aligned_cols=104 Identities=13% Similarity=0.009 Sum_probs=76.1 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf 99999999998413876669999999731255206999999999999511005778999999873126895789999999 Q gi|254780421|r 53 VGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQ 132 (218) Q Consensus 53 as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~ 132 (218) +...+.-+......+++++|+..+++.+.. ..+..+...|++++|+..++..+...+ + .. -+.++ T Consensus 63 ~~~~~~lg~~~~~~~~y~~A~~~~~~al~~-----------~~~~~~~~~~~~~~A~~~~~~al~~~p-~-~~--~~~~~ 127 (167) T 3ffl_A 63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQ-----------KKALSKTSKVRPSTGNSASTPQSQCLP-S-EI--EVKYK 127 (167) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------HHCC--------------------CCC-C-HH--HHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHCC-C-CH--HHHHH T ss_conf 999999999999866799999999999996-----------199999987779999999999987493-5-69--99999 Q ss_pred HHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf 99963026998999999753114642356899999999999 Q gi|254780421|r 133 AASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISAL 173 (218) Q Consensus 133 la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~ 173 (218) ++.++...+++++|+..++.+.... -.+.....+|.+|. T Consensus 128 lg~~~~~~g~~~~Ai~~le~i~~~~--~~~~~~~~Lg~lY~ 166 (167) T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIPSRQ--RTPKINMLLANLYK 166 (167) T ss_dssp HHHHHHHTTCHHHHHHHHHTSCGGG--CCHHHHHHHHHHCC T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHC T ss_conf 9999998399999999999998628--99799999999868 No 111 >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Probab=97.05 E-value=0.0049 Score=35.83 Aligned_cols=83 Identities=22% Similarity=0.206 Sum_probs=61.5 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 99999999999511005778999999873126895789999999999630269989999997531146423568999999 Q gi|254780421|r 89 PLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEIL 168 (218) Q Consensus 89 ~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ell 168 (218) +-+-+.+|.++...|++++|+..|..++...+... -+...++.++...+++++|+..+.....- .|....++..+ T Consensus 9 a~ay~~lg~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~P~~~~~~~~l 83 (91) T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAKQNL 83 (91) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHH T ss_conf 99999999999996899999999988386075046----77623999999968999999999998475-87979999999 Q ss_pred HHHHHHCC Q ss_conf 99999889 Q gi|254780421|r 169 GISALKFG 176 (218) Q Consensus 169 g~~~~~~G 176 (218) |.++.++| T Consensus 84 a~~~~~~G 91 (91) T 1na3_A 84 GNAKQKQG 91 (91) T ss_dssp HHHHHHHC T ss_pred HHHHHHCC T ss_conf 99999767 No 112 >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Probab=97.03 E-value=0.0074 Score=34.73 Aligned_cols=70 Identities=17% Similarity=0.188 Sum_probs=45.7 Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHH Q ss_conf 9999963026998999999753114642356899999999999889989999999999835589989999 Q gi|254780421|r 131 LQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSPFGIST 200 (218) Q Consensus 131 l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ 200 (218) +..+..++++|++++|+..+.....-++.....+...+|.++.+.|++++|++.|++++.-.+..+.... T Consensus 4 l~~~~~L~~qG~~~~Ai~~~~~al~~~P~~~~~a~~~lG~~~~~~g~~~~Ai~~~~kal~i~P~~~~~~~ 73 (99) T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99) T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHH T ss_conf 8999999996899999999999987289889999998570310248799999999999984989999999 No 113 >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Probab=96.72 E-value=0.025 Score=31.47 Aligned_cols=56 Identities=9% Similarity=-0.042 Sum_probs=24.7 Q ss_pred HCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC Q ss_conf 13876669999999731255206999999999999511005778999999873126 Q gi|254780421|r 65 NSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDL 120 (218) Q Consensus 65 ~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~ 120 (218) ..+..++|+..+++.++..|..+..+.....+-..+.++++.+|+..++.++...+ T Consensus 45 ~~~~~e~Al~~~~~al~~nP~~~~a~~~~~~~~~~l~~~~~~~Al~~~~~~l~~~p 100 (306) T 3dra_A 45 AEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE 100 (306) T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC T ss_conf 58960999999999998898879999999999998566679999999999998798 No 114 >2hr2_A Hypothetical protein; NP_663012.1, structural genomics, PSI- 2, protein structure initiative, joint center for structural genomics, JCSG; 2.54A {Chlorobium tepidum tls} SCOP: a.118.8.8 Probab=96.63 E-value=0.029 Score=31.07 Aligned_cols=100 Identities=12% Similarity=0.023 Sum_probs=70.2 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC----------CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCC-- Q ss_conf 999999999984138766699999997312552----------06999999999999511005778999999873126-- Q gi|254780421|r 53 VGENFAQALELFNSNKLDDARSSFEKILSQDNK----------LYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDL-- 120 (218) Q Consensus 53 as~~y~~al~~~~~~~~~~A~~~l~~l~~~~~~----------~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~-- 120 (218) +...+..+...+..+++++|+..+++-++-.++ .....+...++.++...|++++|+..++..+.-.. T Consensus 11 a~~~~~~g~~~~~~g~y~eA~~~y~kAl~~~~~~~~~~~~~~~~~~a~~~~n~g~~~~~lg~~~~A~~~~~~al~~~~~~ 90 (159) T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159) T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH T ss_conf 99999999999985999999999999999823410677750237789999999999998086999999999999865531 Q ss_pred ----CC-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHH Q ss_conf ----89-578999999999963026998999999753 Q gi|254780421|r 121 ----AP-LAVRYAATLQAASILVDTSSYEEISKILQK 152 (218) Q Consensus 121 ----~~-~~~~~lA~l~la~~~~~~~~~d~a~~~l~~ 152 (218) .+ .....-+.++.+..+...+++++|+..+.. T Consensus 91 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 127 (159) T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK 127 (159) T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 3542216666898887699999865884889999999 No 115 >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Probab=96.62 E-value=0.029 Score=31.07 Aligned_cols=88 Identities=13% Similarity=0.052 Sum_probs=50.9 Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH Q ss_conf 99999984138766699999997312552069999999999995110057789999998731268957899999999996 Q gi|254780421|r 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASI 136 (218) Q Consensus 57 y~~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~ 136 (218) |..+......+++++|+..+++..+..+.... +...+|.++...|++++|+..|+.+++-.+.+.. ..+-++++.. T Consensus 10 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~--~~~~~g~~~~~~~~~~~A~~~~~~Al~l~~~~~~--~~a~~~~g~~ 85 (112) T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEESK--YWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN--KDVWAAKADA 85 (112) T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC--HHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--HHHHHHHHHH T ss_conf 99999999969999999999999871955599--9998889999851089999999999854999556--9999999999 Q ss_pred HHC-CCCHHHHHH Q ss_conf 302-699899999 Q gi|254780421|r 137 LVD-TSSYEEISK 148 (218) Q Consensus 137 ~~~-~~~~d~a~~ 148 (218) +.. +++.+++.. T Consensus 86 l~~l~~~~~ea~~ 98 (112) T 2kck_A 86 LRYIEGKEVEAEI 98 (112) T ss_dssp HTTCSSCSHHHHH T ss_pred HHHHCCCHHHHHH T ss_conf 9998799999999 No 116 >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Probab=96.52 E-value=0.0096 Score=34.03 Aligned_cols=26 Identities=8% Similarity=0.086 Sum_probs=16.5 Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHH Q ss_conf 98999999999983558998999999 Q gi|254780421|r 177 KVQKAKTIFEELAKDNNSPFGISTRS 202 (218) Q Consensus 177 d~~~A~~~y~~i~~~~~~p~~~r~ra 202 (218) ++++|.+.|++++...+.....+... T Consensus 106 ~~e~A~~~f~kAl~~~P~n~~y~~~L 131 (158) T 1zu2_A 106 NFDLATQFFQQAVDEQPDNTHYLKSL 131 (158) T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 49999999999997499989999999 No 117 >2e2e_A Formate-dependent nitrite reductase complex NRFG subunit; TPR, cytochrome C biogenesis, O157:H7 EDL933, lyase; 2.05A {Escherichia coli} Probab=96.39 E-value=0.014 Score=32.99 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=64.5 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 9999841387666999999973125520699999999999951100---5778999999873126895789999999999 Q gi|254780421|r 59 QALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGD---TKNAAEIFLKVANDDLAPLAVRYAATLQAAS 135 (218) Q Consensus 59 ~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~---~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~ 135 (218) -+......++++.|+..|++.+.-.+.. ..+.+.+|.+++..++ .+++...+...+...+.+. -+.+.++. T Consensus 50 Lg~~y~~~g~~~~A~~~~~~al~l~p~~--~~~~~~~a~~l~~~~~~~~~~ea~~~~~~al~~~p~~~----~~~~~lg~ 123 (177) T 2e2e_A 50 LGEYYLWQNDYSNSLLAYRQALQLRGEN--AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI----TALMLLAS 123 (177) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHCSC--HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCH----HHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCH----HHHHHHHH T ss_conf 9999999699999999999999858632--79998789999986387631246899989987199989----99999999 Q ss_pred HHHCCCCHHHHHHHHHHHCCCCC Q ss_conf 63026998999999753114642 Q gi|254780421|r 136 ILVDTSSYEEISKILQKLSEPSN 158 (218) Q Consensus 136 ~~~~~~~~d~a~~~l~~~~~~~~ 158 (218) +++..+++++|+..+......++ T Consensus 124 ~~~~~g~~~~A~~~~~~~l~~~p 146 (177) T 2e2e_A 124 DAFMQANYAQAIELWQKVMDLNS 146 (177) T ss_dssp HHHHTTCHHHHHHHHHHHHHTCC T ss_pred HHHHCCCHHHHHHHHHHHHHCCC T ss_conf 99997899999999999986599 No 118 >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Probab=96.34 E-value=0.043 Score=29.99 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=71.8 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC-CHHHH--HHHHHHHHH Q ss_conf 999984138766699999997312552069999999999995110057789999998731268-95789--999999999 Q gi|254780421|r 59 QALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLA-PLAVR--YAATLQAAS 135 (218) Q Consensus 59 ~al~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~-~~~~~--~lA~l~la~ 135 (218) ........+++++|+..+++.++..|+. +.+.+.+|.+++..|++++|+..+..++.-.+. ...+. .-+..+++. T Consensus 10 ~G~~~~~~g~~~~Ai~~~~~al~~~p~~--~~~~~nla~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 87 (131) T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELDPTN--MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 9999998689999999999998709998--99998578999881989999997999998692361767899999999999 Q ss_pred HHHCCCCHHHHHHHHHHHC Q ss_conf 6302699899999975311 Q gi|254780421|r 136 ILVDTSSYEEISKILQKLS 154 (218) Q Consensus 136 ~~~~~~~~d~a~~~l~~~~ 154 (218) .+...+++++|+..+.... T Consensus 88 ~~~~~~~~~~A~~~~~~al 106 (131) T 1elr_A 88 SYFKEEKYKDAIHFYNKSL 106 (131) T ss_dssp HHHHTTCHHHHHHHHHHHH T ss_pred HHHHHCCHHHHHHHHHHHH T ss_conf 9998199999999999997 No 119 >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Probab=96.29 E-value=0.0032 Score=36.97 Aligned_cols=93 Identities=18% Similarity=0.065 Sum_probs=49.7 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 99999995110057789999998731268957899999999996302699899999975311464235689999999999 Q gi|254780421|r 93 MYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISA 172 (218) Q Consensus 93 l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~ 172 (218) ..++..+...|++++|+..++... + . + +...++..+...++++.|+..+.... -.+.+...+|.++ T Consensus 152 ~~l~~~~~~~~~~~~A~~~~~ka~---~-~---~--~~~~~~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~l~~~~ 217 (449) T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKAN---S-T---R--TWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYY 217 (449) T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT---C-H---H--HHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHH T ss_pred HHHHHHHHHCCCHHHHHHHHHHCC---H-H---H--HHHHHHHHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHH T ss_conf 999999987588899999998632---5-8---9--99999999998430999999888481-----5399999999999 Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHH Q ss_conf 988998999999999983558998999 Q gi|254780421|r 173 LKFGKVQKAKTIFEELAKDNNSPFGIS 199 (218) Q Consensus 173 ~~~Gd~~~A~~~y~~i~~~~~~p~~~r 199 (218) ...|++++|.+.|++++...+....+. T Consensus 218 ~~~g~~~eAi~~~~~al~~~~~~~~~~ 244 (449) T 1b89_A 218 QDRGYFEELITMLEAALGLERAHMGMF 244 (449) T ss_dssp HHTTCHHHHHHHHHHHTTSTTCCHHHH T ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHH T ss_conf 986988999999999875170245999 No 120 >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Probab=96.07 E-value=0.059 Score=29.14 Aligned_cols=112 Identities=11% Similarity=-0.030 Sum_probs=74.3 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 99999999951100577899999987312689578999999999963026998999999753114642356899999999 Q gi|254780421|r 91 SNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGI 170 (218) Q Consensus 91 A~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~ 170 (218) +...++......++...+...+...+.. . ..-+.+.++.++...+++++|+..+.....- .|..+.++..+|. T Consensus 122 ~~~~lg~~~~~~~~~~~a~~~~~~~l~~----~--~~~~~~~LG~l~r~~~~~~~A~~~y~~A~~l-~P~~~~~~~~lg~ 194 (497) T 1ya0_A 122 KSSQLGIISNKQTHTSAIVKPQSSSCSY----I--CQHCLVHLGDIARYRNQTSQAESYYRHAAQL-VPSNGQPYNQLAI 194 (497) T ss_dssp ---------------------CCHHHHH----H--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTBSHHHHHHHH T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHCCC----C--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH T ss_conf 9986158760287589999999987699----8--8999999999999857999999999999987-8898999999999 Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 999889989999999999835589989999999999950 Q gi|254780421|r 171 SALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANI 209 (218) Q Consensus 171 ~~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l 209 (218) ++...|+...|..+|.+.+...++-+.-+......+... T Consensus 195 l~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497) T 1ya0_A 195 LASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497) T ss_dssp HHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH T ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH T ss_conf 999879999999999999817999889999999999874 No 121 >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 Probab=96.06 E-value=0.06 Score=29.11 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=67.4 Q ss_pred HHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 66999999973-125520699999999999951---10057789999998731268957899999999996302699899 Q gi|254780421|r 70 DDARSSFEKIL-SQDNKLYNPLSNMYIASILVA---KGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEE 145 (218) Q Consensus 70 ~~A~~~l~~l~-~~~~~~ya~lA~l~lA~~~~~---~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~ 145 (218) .+++..+.+.. .+.+......+.|..|..+.. .++.++|+..|+.++...+.+ .+ -+.+.++..+...+++++ T Consensus 19 ~e~l~~l~~~l~~~~~~~~~~~~~f~~a~~~~~s~~~~~~~~Ai~~l~~~l~~~p~~--~~-~~~y~Lg~~y~~lg~y~~ 95 (144) T 1y8m_A 19 PQQLEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RR-ECLYYLTIGCYKLGEYSM 95 (144) T ss_dssp HHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--HH-HHHHHHHHHHHTTTCHHH T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC--HH-HHHHHHHHHHHHCCCHHH T ss_conf 999999999998654766359999999999998598568999999999987217998--99-999999999999398899 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 99997531146423568999999999998 Q gi|254780421|r 146 ISKILQKLSEPSNPMHQFANEILGISALK 174 (218) Q Consensus 146 a~~~l~~~~~~~~~~~~~a~ellg~~~~~ 174 (218) |+..++....-+ |....++.+++.+..+ T Consensus 96 A~~~~~~aL~l~-P~n~~a~~l~~~i~~~ 123 (144) T 1y8m_A 96 AKRYVDTLFEHE-RNNKQVGALKSMVEDK 123 (144) T ss_dssp HHHHHHHHHHTC-CCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHCC-CCCHHHHHHHHHHHHH T ss_conf 999999888349-8949999999999999 No 122 >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Probab=96.05 E-value=0.061 Score=29.06 Aligned_cols=137 Identities=12% Similarity=0.056 Sum_probs=88.2 Q ss_pred HHHHHHHHHHHHH----------------HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 9999999999998----------------413876669999999731255206999999999999511005778999999 Q gi|254780421|r 51 NIVGENFAQALEL----------------FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLK 114 (218) Q Consensus 51 ~~as~~y~~al~~----------------~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~ 114 (218) +++-..|..++.. ...++.+.+...++..+...+... .......+......|+...+...|.. T Consensus 81 e~a~~i~~ral~~~~~~~~~lw~~~a~~e~~~~~~~~a~~i~~~~l~~~~~~~-~~~w~~y~~~~~~~~~~~~a~~i~~~ 159 (308) T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-TLVYIQYMKFARRAEGIKSGRMIFKK 159 (308) T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-HHHHHHHHHHHHHHHCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999999875998699999999999984999989999999988502347-99999999999981887999999999 Q ss_pred HHHHCCCCHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC Q ss_conf 8731268957899999999996-302699899999975311464235689999999999988998999999999983558 Q gi|254780421|r 115 VANDDLAPLAVRYAATLQAASI-LVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNN 193 (218) Q Consensus 115 i~~~~~~~~~~~~lA~l~la~~-~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~ 193 (218) .+...+....+ .+..+.+ ....++.+.+...+...... .|.........+....+.|+.+.||..|++++.... T Consensus 160 al~~~p~~~~~----~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~~~~~~~w~~y~~~~~~~g~~~~AR~~ferai~~~~ 234 (308) T 2ond_A 160 AREDARTRHHV----YVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308) T ss_dssp HHTSTTCCTHH----HHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS T ss_pred HHHHCCCCHHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC T ss_conf 99848996199----9999999998568879999999999875-899899999999999988899999999999998089 No 123 >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Probab=96.03 E-value=0.034 Score=30.61 Aligned_cols=63 Identities=10% Similarity=0.145 Sum_probs=49.7 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCC Q ss_conf 9999999999951100577899999987312689578999999999963026998999999753114 Q gi|254780421|r 89 PLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSE 155 (218) Q Consensus 89 ~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~ 155 (218) +.+.+.+|.++...|++++|+..|+.++.-.+... -+.+.++.++...+++++|+..+..... T Consensus 7 ~~a~~~lg~~~~~~g~~~~A~~~~~~ai~~~p~~~----~a~~~lg~~~~~~g~~~eA~~~y~~al~ 69 (100) T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV----GTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99999999999995999999999998774496469----9999999999996899999999999986 No 124 >3bee_A Putative YFRE protein; putaive YFRE protein, structural genomics, PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Probab=96.00 E-value=0.021 Score=31.88 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=46.0 Q ss_pred HHHHHHHHHHHCCCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC Q ss_conf 999999996302699-89999997531146423568999999999998899899999999998355899 Q gi|254780421|r 128 AATLQAASILVDTSS-YEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDNNSP 195 (218) Q Consensus 128 lA~l~la~~~~~~~~-~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~~~p 195 (218) ++.+-.+..+.+.+. .+++...+.....- .|....++.++|..+...|++++|++.|++++...+.. T Consensus 9 l~~~A~al~~~~~~~~t~ea~~~l~~aL~~-~P~~~~al~~lg~~~~~~g~y~~Ai~~w~~lL~~~p~~ 76 (93) T 3bee_A 9 LAAKATTLYYLHKQAMTDEVSLLLEQALQL-EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93) T ss_dssp HHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC T ss_conf 999999999995998899999999999977-86989999999999998689999999999998428998 No 125 >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 Probab=95.91 E-value=0.071 Score=28.68 Aligned_cols=116 Identities=9% Similarity=-0.036 Sum_probs=48.9 Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 99841387666999999973125520699999999999951100577899999987312689578999999999963026 Q gi|254780421|r 61 LELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDT 140 (218) Q Consensus 61 l~~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~ 140 (218) ......++.+.|+..+.+... + +-+.-.++..+...|++++|+..+...+...+..... ...+.......+. T Consensus 185 ~~~~~~~~~~~A~~~~~~~~~-----~-~~~~~~l~~~~~~~g~~~eAi~~~~~al~~~~~~~~~--~~~l~~~~~~~~~ 256 (449) T 1b89_A 185 FACVDGKEFRLAQMCGLHIVV-----H-ADELEELINYYQDRGYFEELITMLEAALGLERAHMGM--FTELAILYSKFKP 256 (449) T ss_dssp HHHHHTTCHHHHHHTTTTTTT-----C-HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHH--HHHHHHHHHTTCH T ss_pred HHHHHHHHHHHHHHHHHHCCC-----C-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH--HHHHHHHHHHCCH T ss_conf 999984309999998884815-----3-9999999999998698899999999987517024599--9999999873066 Q ss_pred CCHHHHHHHHHHHCCCCCHHHH-------HHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 9989999997531146423568-------9999999999988998999999999 Q gi|254780421|r 141 SSYEEISKILQKLSEPSNPMHQ-------FANEILGISALKFGKVQKAKTIFEE 187 (218) Q Consensus 141 ~~~d~a~~~l~~~~~~~~~~~~-------~a~ellg~~~~~~Gd~~~A~~~y~~ 187 (218) .+..++++.+. ....+... ....-++.+|...|+.++|...+.. T Consensus 257 ~k~~eal~~~~---~~~~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~A~~~~~~ 307 (449) T 1b89_A 257 QKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 307 (449) T ss_dssp HHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999888---6655899989887662899999999985779999998873 No 126 >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Probab=95.87 E-value=0.073 Score=28.57 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=21.1 Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC Q ss_conf 7666999999973125520699999999999951100577899999987312 Q gi|254780421|r 68 KLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDD 119 (218) Q Consensus 68 ~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~ 119 (218) ++++++..+++++...+..|.. ...++.++...|++++|+..+..++... T Consensus 147 ~~~~al~~~~~~l~~~pk~~~~--~~~~g~~~~~l~~~~~Al~~~~~al~~~ 196 (382) T 2h6f_A 147 DLHEEMNYITAIIEEQPKNYQV--WHHRRVLVEWLRDPSQELEFIADILNQD 196 (382) T ss_dssp CHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHTCCTTHHHHHHHHHHHC T ss_pred CHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHC T ss_conf 8999999999999878998899--9999999998257999999999998638 No 127 >2pqr_A Mitochondria fission 1 protein; TPR domain, protein-protein complex, apoptosis; 1.88A {Saccharomyces cerevisiae} PDB: 2pqn_A Probab=95.85 E-value=0.043 Score=29.98 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=41.7 Q ss_pred HHHHHHHHHHCCCCHH---HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC Q ss_conf 9999999630269989---999997531146423568999999999998899899999999998355 Q gi|254780421|r 129 ATLQAASILVDTSSYE---EISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAKDN 192 (218) Q Consensus 129 A~l~la~~~~~~~~~d---~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~~~ 192 (218) ++++.|..++...+.+ +++..|..+...+....--++..+|..|.+.|++++|+..+++++... T Consensus 41 ~~F~yA~~L~kS~~~~~~~~gI~lLe~l~~~~p~~~rd~lY~La~~y~~lg~y~~A~~~~~~~L~~~ 107 (129) T 2pqr_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (129) T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHC----- T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC T ss_conf 8999999998269799999999999999871996189999999999998257999999999998629 No 128 >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, glycoprotein, metal-binding, oxidoreductase, iron, vitamin C, TPR repeat, dioxygenase; 2.03A {Homo sapiens} PDB: 1tjc_A Probab=95.74 E-value=0.018 Score=32.30 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=49.3 Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----C-CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCH Q ss_conf 999999999984138766699999997312----5-5206999999999999511005778999999873126895 Q gi|254780421|r 53 VGENFAQALELFNSNKLDDARSSFEKILSQ----D-NKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPL 123 (218) Q Consensus 53 as~~y~~al~~~~~~~~~~A~~~l~~l~~~----~-~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~ 123 (218) +.+-|.-+....+.++++.|+.-|++-+.. . +..-...+...++..+...|++++|+..++.++.-.+.++ T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104) T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104) T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH T ss_conf 9999999999999689999999999998754356756552999999999999985983799999999997596989 No 129 >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Probab=95.48 E-value=0.1 Score=27.66 Aligned_cols=141 Identities=13% Similarity=0.003 Sum_probs=79.0 Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHH Q ss_conf 38766699999997312552069999999999995110057789999998731268957899999999996302699899 Q gi|254780421|r 66 SNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEE 145 (218) Q Consensus 66 ~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~ 145 (218) .+..+.+...+++-+...++ ......+..+......|+.+.|...|...+.....+... .-+..+......++.+. T Consensus 77 ~~~~e~a~~i~~ral~~~~~-~~~~lw~~~a~~e~~~~~~~~a~~i~~~~l~~~~~~~~~---~w~~y~~~~~~~~~~~~ 152 (308) T 2ond_A 77 KLFSDEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL---VYIQYMKFARRAEGIKS 152 (308) T ss_dssp HHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHH---HHHHHHHHHHHHHCHHH T ss_pred HCCHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHCCCHHH T ss_conf 01349999999999987599-869999999999998499998999999998850234799---99999999998188799 Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC Q ss_conf 99997531146423568999999999-9988998999999999983558998999999999995003 Q gi|254780421|r 146 ISKILQKLSEPSNPMHQFANEILGIS-ALKFGKVQKAKTIFEELAKDNNSPFGISTRSQMILANIIA 211 (218) Q Consensus 146 a~~~l~~~~~~~~~~~~~a~ellg~~-~~~~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l~~ 211 (218) +...+....... |-........+.+ +...|+.+.|+..|+.++...+.+..+-...-.++...+. T Consensus 153 a~~i~~~al~~~-p~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~~~~~~~w~~y~~~~~~~g~ 218 (308) T 2ond_A 153 GRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE 218 (308) T ss_dssp HHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC T ss_conf 999999999848-996199999999999856887999999999987589989999999999998889 No 130 >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Probab=95.26 E-value=0.12 Score=27.23 Aligned_cols=111 Identities=11% Similarity=0.085 Sum_probs=71.6 Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC----CCCH Q ss_conf 766699999997312552069999999999995110057789999998731268957899999999996302----6998 Q gi|254780421|r 68 KLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVD----TSSY 143 (218) Q Consensus 68 ~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~----~~~~ 143 (218) +.++|+.-+++-.+.+++. +.+.++. ....+.++|+..|+..++... +. |.+.++.++.. ..++ T Consensus 10 D~~kA~~~~~kaa~~g~~~----a~~~l~~--~~~~~~~~A~~~~~~aa~~g~-~~-----a~~~lg~~y~~g~~~~~d~ 77 (138) T 1klx_A 10 DLKKAIQYYVKACELNEMF----GCLSLVS--NSQINKQKLFQYLSKACELNS-GN-----GCRFLGDFYENGKYVKKDL 77 (138) T ss_dssp HHHHHHHHHHHHHHTTCTT----HHHHHHT--CTTSCHHHHHHHHHHHHHTTC-HH-----HHHHHHHHHHHCSSSCCCH T ss_pred CHHHHHHHHHHHHHCCCHH----HHHHHHH--CCCCCHHHHHHHHHHHHHCCC-HH-----HHHHHHHHHHCCCCCCCCH T ss_conf 8999999999999888899----9999985--667689999999999998889-99-----9999999986687522469 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCC Q ss_conf 9999997531146423568999999999998----8998999999999983558 Q gi|254780421|r 144 EEISKILQKLSEPSNPMHQFANEILGISALK----FGKVQKAKTIFEELAKDNN 193 (218) Q Consensus 144 d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~----~Gd~~~A~~~y~~i~~~~~ 193 (218) .++...+......+.+ .+...+|.+|.. ..|..+|.+.|+++.+..+ T Consensus 78 ~~A~~~~~~aa~~g~~---~A~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 128 (138) T 1klx_A 78 RKAAQYYSKACGLNDQ---DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138) T ss_dssp HHHHHHHHHHHHTTCH---HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHCCCH---HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC T ss_conf 9999999998770875---89999999998199977489999999999998789 No 131 >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Probab=95.16 E-value=0.13 Score=27.03 Aligned_cols=127 Identities=15% Similarity=0.062 Sum_probs=70.8 Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC----CCCH Q ss_conf 766699999997312552069999999999995110057789999998731268957899999999996302----6998 Q gi|254780421|r 68 KLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVD----TSSY 143 (218) Q Consensus 68 ~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~----~~~~ 143 (218) +...+...++...+.++.....++.+.. ..-..++.+.|+..|........ + -|.+.++.++.. ..++ T Consensus 232 d~~~A~~~~~~aa~~~~~a~~~l~~~l~--~~~~~~d~~~A~~~~~~aa~~g~--~----~A~~~Lg~~y~~G~g~~~d~ 303 (452) T 3e4b_A 232 DEKTAQALLEKIAPGYPASWVSLAQLLY--DFPELGDVEQMMKYLDNGRAADQ--P----RAELLLGKLYYEGKWVPADA 303 (452) T ss_dssp CHHHHHHHHHHHGGGSTHHHHHHHHHHH--HSGGGCCHHHHHHHHHHHHHTTC--H----HHHHHHHHHHHHCSSSCCCH T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHH--HCCCCCCHHHHHHHHHHHHHCCC--H----HHHHHHHHHHHCCCCCCCCH T ss_conf 3999999999998059899999999998--67743689999999999987889--9----99999999998599888699 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH Q ss_conf 9999997531146423568999999999998----899899999999998355899899999999999 Q gi|254780421|r 144 EEISKILQKLSEPSNPMHQFANEILGISALK----FGKVQKAKTIFEELAKDNNSPFGISTRSQMILA 207 (218) Q Consensus 144 d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~----~Gd~~~A~~~y~~i~~~~~~p~~~r~ra~~~l~ 207 (218) ..+...+..-... +| .+...+|.+|.. ..|..+|+..|++++...+ |......+.+... T Consensus 304 ~~A~~~~~~aa~~-~~---~A~~~Lg~~y~~G~~~~~d~~~A~~~~~~AA~~g~-~~A~~~L~~~y~~ 366 (452) T 3e4b_A 304 KAAEAHFEKAVGR-EV---AADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NSADFAIAQLFSQ 366 (452) T ss_dssp HHHHHHHHTTTTT-CH---HHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TTHHHHHHHHHHS T ss_pred HHHHHHHHHHHCC-CH---HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHC T ss_conf 9999999986015-79---99999999998699988889999999999998889-9999999999982 No 132 >3bee_A Putative YFRE protein; putaive YFRE protein, structural genomics, PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} Probab=94.79 E-value=0.16 Score=26.40 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=41.4 Q ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHH Q ss_conf 999999841387-66699999997312552069999999999995110057789999998731268957 Q gi|254780421|r 57 FAQALELFNSNK-LDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLA 124 (218) Q Consensus 57 y~~al~~~~~~~-~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~ 124 (218) +.+++...+.+. .+++...+++.+...|+. +-+.+.++-.++..|++++|+..|+.+++..+.++. T Consensus 12 ~A~al~~~~~~~~t~ea~~~l~~aL~~~P~~--~~al~~lg~~~~~~g~y~~Ai~~w~~lL~~~p~~~~ 78 (93) T 3bee_A 12 KATTLYYLHKQAMTDEVSLLLEQALQLEPYN--EAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93) T ss_dssp HHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC T ss_conf 9999999959988999999999999778698--999999999999868999999999999842899811 No 133 >2pqr_A Mitochondria fission 1 protein; TPR domain, protein-protein complex, apoptosis; 1.88A {Saccharomyces cerevisiae} PDB: 2pqn_A Probab=94.58 E-value=0.19 Score=26.08 Aligned_cols=92 Identities=11% Similarity=0.055 Sum_probs=64.5 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC Q ss_conf 9731255206999999999999511---0057789999998731268957899999999996302699899999975311 Q gi|254780421|r 78 KILSQDNKLYNPLSNMYIASILVAK---GDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLS 154 (218) Q Consensus 78 ~l~~~~~~~ya~lA~l~lA~~~~~~---g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~ 154 (218) +...++.+.-.+.++|..|-.++.+ ++..+|+.+|..+....+ ...++ +.+.+|..+...+++++|...+.... T Consensus 28 ~~~~e~~~~~~~q~~F~yA~~L~kS~~~~~~~~gI~lLe~l~~~~p--~~~rd-~lY~La~~y~~lg~y~~A~~~~~~~L 104 (129) T 2pqr_A 28 QVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE--SRRRE-CLYYLTIGCYKLGEYSMAKRYVDTLF 104 (129) T ss_dssp HHHHHTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG--GGHHH-HHHHHHHHHHHTTCHHHHHHHHHC-- T ss_pred HHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC--CHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 9998608998688899999999826979999999999999987199--61899-99999999998257999999999998 Q ss_pred CCCCHHHHHHHHHHHHHHH Q ss_conf 4642356899999999999 Q gi|254780421|r 155 EPSNPMHQFANEILGISAL 173 (218) Q Consensus 155 ~~~~~~~~~a~ellg~~~~ 173 (218) .-+ |-...|+.++..+.- T Consensus 105 ~~~-P~n~qA~~L~~~ie~ 122 (129) T 2pqr_A 105 EHE-RNNKQVGALKSMVED 122 (129) T ss_dssp ------------------- T ss_pred HHC-CCCHHHHHHHHHHHH T ss_conf 629-897999999999999 No 134 >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: e.61.1.1 Probab=94.55 E-value=0.16 Score=26.50 Aligned_cols=80 Identities=10% Similarity=0.032 Sum_probs=56.7 Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC Q ss_conf 99995110057789999998731268957899999999996302699899999975311464235689999999999988 Q gi|254780421|r 96 ASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKF 175 (218) Q Consensus 96 A~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~ 175 (218) ++..+.+|++++|++.++..++..+.+. -++..++.++...+++++|+..+.....-. |-.......++.+.... T Consensus 4 ~~~aL~~G~l~eAl~~l~~alr~~P~da----~ar~~L~~lL~~~G~~~~A~~qL~~a~~l~-P~~~~~~~~~~~ll~a~ 78 (273) T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDA----SLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAA 78 (273) T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHH T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHC T ss_conf 9999987999999999999999789999----999999999998799999999999999879-88689999999999834 Q ss_pred CCHHH Q ss_conf 99899 Q gi|254780421|r 176 GKVQK 180 (218) Q Consensus 176 Gd~~~ 180 (218) +...+ T Consensus 79 ~~r~e 83 (273) T 1zbp_A 79 QARKD 83 (273) T ss_dssp HHHHH T ss_pred CCCHH T ss_conf 57589 No 135 >3pdn_A SET and MYND domain-containing protein 3; rossmann fold, zinc finger, methyltransferase, transferase, transferase-transferase inhibitor complex; HET: SFG; 1.70A {Homo sapiens} PDB: 3mek_A* Probab=94.44 E-value=0.2 Score=25.89 Aligned_cols=92 Identities=12% Similarity=-0.001 Sum_probs=51.9 Q ss_pred HHHCCHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHCCCCHHHHHH-------HHHHHCCCCCHHHHHHHHH Q ss_conf 95110057789999998731268----957899999999996302699899999-------9753114642356899999 Q gi|254780421|r 99 LVAKGDTKNAAEIFLKVANDDLA----PLAVRYAATLQAASILVDTSSYEEISK-------ILQKLSEPSNPMHQFANEI 167 (218) Q Consensus 99 ~~~~g~~~~A~~~l~~i~~~~~~----~~~~~~lA~l~la~~~~~~~~~d~a~~-------~l~~~~~~~~~~~~~a~el 167 (218) ....++.+++...++.+++.... ......-....++..+...+++++|+. .+........|..+..+.. T Consensus 296 ~~~~~~~~~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~l~~~~~~~g~~hp~~~~~~~~ 375 (428) T 3pdn_A 296 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 375 (428) T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 43202488999999999999987437543114899999999988630499999999999999998749998999999999 Q ss_pred HHHHHHHCCCHHHHHHHHHHHHH Q ss_conf 99999988998999999999983 Q gi|254780421|r 168 LGISALKFGKVQKAKTIFEELAK 190 (218) Q Consensus 168 lg~~~~~~Gd~~~A~~~y~~i~~ 190 (218) +|.++..+|+..+|...|++++. T Consensus 376 la~~~~~~g~~~~A~~~~~~a~~ 398 (428) T 3pdn_A 376 VGKLQLHQGMFPQAMKNLRLAFD 398 (428) T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH T ss_pred HHHHHHHCCCHHHHHHHHHHHHH T ss_conf 99999987899999999999999 No 136 >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix- turn-helix, repeat protein; 2.00A {Helicobacter pylori 26695} SCOP: a.118.18.1 Probab=94.20 E-value=0.22 Score=25.57 Aligned_cols=27 Identities=7% Similarity=-0.053 Sum_probs=12.4 Q ss_pred HHHHHHHHHHH----CCCHHHHHHHHHHHHH Q ss_conf 99999999998----8998999999999983 Q gi|254780421|r 164 ANEILGISALK----FGKVQKAKTIFEELAK 190 (218) Q Consensus 164 a~ellg~~~~~----~Gd~~~A~~~y~~i~~ 190 (218) +...+|.++.. ..|.+.|...|+++++ T Consensus 184 A~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~ 214 (273) T 1ouv_A 184 GCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273) T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH T ss_conf 9999887711788844479998899999998 No 137 >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 Probab=93.95 E-value=0.25 Score=25.27 Aligned_cols=78 Identities=12% Similarity=-0.053 Sum_probs=47.2 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf 99999999995110057789999998731268957899999999996302699899999975311464235689999999 Q gi|254780421|r 90 LSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILG 169 (218) Q Consensus 90 lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg 169 (218) .+.+.++.++...|++++|+..|+..+.-.+... .+...+|.++...++..+|+..+..-..-..|| ..|..-++ T Consensus 153 ~~~~~LG~l~r~~~~~~~A~~~y~~A~~l~P~~~----~~~~~lg~l~~~~~~~~~A~~~y~ral~~~~~~-~~a~~nL~ 227 (497) T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG----QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF-PAASTNLQ 227 (497) T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS----HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCC-HHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-HHHHHHHH T ss_conf 9999999999985799999999999998788989----999999999998799999999999998179998-89999999 Q ss_pred HHH Q ss_conf 999 Q gi|254780421|r 170 ISA 172 (218) Q Consensus 170 ~~~ 172 (218) ..+ T Consensus 228 ~~~ 230 (497) T 1ya0_A 228 KAL 230 (497) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 138 >2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Probab=92.47 E-value=0.12 Score=27.16 Aligned_cols=34 Identities=21% Similarity=0.021 Sum_probs=21.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 4588999999997519999999999999999999 Q gi|254780421|r 8 NSYKGKCKMGKCCYKWIAPLLILMILSLAIWFYL 41 (218) Q Consensus 8 ~~~~~~~~~~~~~yk~ii~~~i~~i~~~~~~~~~ 41 (218) ++.+=|-+||-.+||+.++.++++++.++.++.| T Consensus 83 ~A~kL~r~mwwrn~K~~ii~~~v~~i~i~iii~~ 116 (119) T 2kog_A 83 SAAKLKRKYWWKNLKMMIILGVICAIILIIIIVY 116 (119) T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999999999999999999999999888 No 139 >3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, acetylation, cell junction, coiled coil; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Probab=88.40 E-value=0.58 Score=23.03 Aligned_cols=32 Identities=22% Similarity=0.013 Sum_probs=20.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 58899999999751999999999999999999 Q gi|254780421|r 9 SYKGKCKMGKCCYKWIAPLLILMILSLAIWFY 40 (218) Q Consensus 9 ~~~~~~~~~~~~yk~ii~~~i~~i~~~~~~~~ 40 (218) +.+=|-+||-.+||+.+++++++++.++..+. T Consensus 56 a~~l~~~~ww~~~K~~~i~~~~~~~~i~~ii~ 87 (91) T 3hd7_A 56 AAKLKRKYWWKNLKMMIILGVICAIILIIIIV 87 (91) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999999999999999 No 140 >3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A Probab=78.70 E-value=2.5 Score=19.04 Aligned_cols=70 Identities=20% Similarity=0.236 Sum_probs=52.7 Q ss_pred HHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 5778999999873126895----789999999999630269989999997531146423568999999999998 Q gi|254780421|r 105 TKNAAEIFLKVANDDLAPL----AVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALK 174 (218) Q Consensus 105 ~~~A~~~l~~i~~~~~~~~----~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~ 174 (218) .+-|+..++.+-.+.+.+. ..+.+-+...+.+.+..+.+++|...|..+.++++....+-..++..+-.+ T Consensus 88 LESAl~vw~~I~kE~~~~~~l~e~i~~lik~qAV~VCme~g~FkeA~eil~r~f~~~~~~~~lr~kL~~II~~K 161 (235) T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREK 161 (235) T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC T ss_conf 89999999999985164156789999999999999999806607899999998478998608999999999703 No 141 >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, transcription; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Probab=77.66 E-value=2.7 Score=18.85 Aligned_cols=116 Identities=10% Similarity=-0.003 Sum_probs=80.1 Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHCCC--------CH----------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHH Q ss_conf 999999995110057789999998731268--------95----------789999999999630269989999997531 Q gi|254780421|r 92 NMYIASILVAKGDTKNAAEIFLKVANDDLA--------PL----------AVRYAATLQAASILVDTSSYEEISKILQKL 153 (218) Q Consensus 92 ~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~--------~~----------~~~~lA~l~la~~~~~~~~~d~a~~~l~~~ 153 (218) ....+......++.+.++..|...+.--.. .. .....+...++...+..+++++++..+... T Consensus 118 l~~~a~~a~~~~~~~~a~~~l~~Al~LyrG~~L~~~~~~~w~~~~r~~l~~~~~~al~~la~~~l~~g~~~~a~~~~~~~ 197 (388) T 2ff4_A 118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL 197 (388) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99988765415997999999999999727876788754027899999999999999999999999869889999999999 Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------CCCCCHHHHHHHHHHHHH Q ss_conf 1464235689999999999988998999999999983------558998999999999995 Q gi|254780421|r 154 SEPSNPMHQFANEILGISALKFGKVQKAKTIFEELAK------DNNSPFGISTRSQMILAN 208 (218) Q Consensus 154 ~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~i~~------~~~~p~~~r~ra~~~l~~ 208 (218) ..- .|+.-.++..+..++.+.|+..+|...|+..-. ..++++.+++--+.+|.. T Consensus 198 l~~-dP~~E~~~~~Lm~al~~~G~~~~Al~~Y~~~~~~L~~ELG~~Ps~~l~~L~~~il~~ 257 (388) T 2ff4_A 198 TFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILRQ 257 (388) T ss_dssp HHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTT T ss_pred HHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC T ss_conf 996-848999999999999986999999999999999999962999789999999998458 No 142 >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Probab=77.53 E-value=2.8 Score=18.83 Aligned_cols=93 Identities=12% Similarity=0.038 Sum_probs=52.4 Q ss_pred CHHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHH-HHCCCCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHCC Q ss_conf 00577899999987312689578----99999999996-30269989999997531146-42356899999999999889 Q gi|254780421|r 103 GDTKNAAEIFLKVANDDLAPLAV----RYAATLQAASI-LVDTSSYEEISKILQKLSEP-SNPMHQFANEILGISALKFG 176 (218) Q Consensus 103 g~~~~A~~~l~~i~~~~~~~~~~----~~lA~l~la~~-~~~~~~~d~a~~~l~~~~~~-~~~~~~~a~ellg~~~~~~G 176 (218) ++...+..+|+..+..-..+..+ +.+ ++=+.++ +....+.+++...+..+... -++-.+...+.-|..+..+| T Consensus 51 ~~~~~l~~llER~l~~~~~~~~y~~d~Ryl-klWi~Ya~~~~~~~~~~ar~vy~~~~~~~i~~~~a~~~~~~A~~~e~~~ 129 (202) T 3esl_A 51 SGQEVLRSTMERCLIYIQDMETYRNDPRFL-KIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQ 129 (202) T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGTTCHHHH-HHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHCCHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC T ss_conf 659999999999998425387650248899-9999999985301524599999999982899860999999999999808 Q ss_pred CHHHHHHHHHHHHHCCCCCH Q ss_conf 98999999999983558998 Q gi|254780421|r 177 KVQKAKTIFEELAKDNNSPF 196 (218) Q Consensus 177 d~~~A~~~y~~i~~~~~~p~ 196 (218) +++.|+++|+..+.....|. T Consensus 130 ~~~~Ar~Iy~~gi~~~a~P~ 149 (202) T 3esl_A 130 FFLEAKVLLELGAENNCRPY 149 (202) T ss_dssp CHHHHHHHHHHHHHTTCBSH T ss_pred CHHHHHHHHHHHHHCCCCCH T ss_conf 99999999999987579979 No 143 >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A Probab=76.51 E-value=0.11 Score=27.38 Aligned_cols=19 Identities=5% Similarity=-0.055 Sum_probs=10.5 Q ss_pred HHHHHHHHCCCHHHHHHHH Q ss_conf 9999999889989999999 Q gi|254780421|r 167 ILGISALKFGKVQKAKTIF 185 (218) Q Consensus 167 llg~~~~~~Gd~~~A~~~y 185 (218) +.+.+|.+.+++++|++.| T Consensus 459 iAa~lY~k~~r~~~AI~l~ 477 (624) T 3lvg_A 459 IAAYLFKGNNRWKQSVELC 477 (624) T ss_dssp HHHHHHHTTCHHHHHSSCS T ss_pred HHHHHHHHCCCHHHHHHHH T ss_conf 9999998868989999998 No 144 >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* Probab=68.74 E-value=4.5 Score=17.52 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=12.3 Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 9999999998899899999999998 Q gi|254780421|r 165 NEILGISALKFGKVQKAKTIFEELA 189 (218) Q Consensus 165 ~ellg~~~~~~Gd~~~A~~~y~~i~ 189 (218) ..-+|.++...|+.++|...|+.+. T Consensus 322 ~YW~aRa~~~~G~~~~A~~~~~~aa 346 (618) T 1qsa_A 322 RYWQADLLLERGREAEAKEILHQLM 346 (618) T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHC T ss_conf 9887999986476789999999861 No 145 >2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1 Probab=65.63 E-value=5.2 Score=17.14 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=54.8 Q ss_pred HHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCH Q ss_conf 95110057789999998731268957899999999996302699899999975311464235689999999999988998 Q gi|254780421|r 99 LVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKV 178 (218) Q Consensus 99 ~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~ 178 (218) ...+.-++.++..+.++++|.+.|..+|..|. ++...|. +++.+.... . T Consensus 6 ~~~e~~~~q~~~~L~~I~~D~sVPRNIRr~a~--------------ea~~~L~---n~~~~~~vR--------------a 54 (89) T 2qsb_A 6 RVDQNLFNEVMYLLDELSQDITVPKNVRKVAQ--------------DSKAKLS---QENESLDLR--------------C 54 (89) T ss_dssp HHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHH--------------HHHHHHT---CTTSCHHHH--------------H T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH--------------HHHHHHH---CCCCCHHHH--------------H T ss_conf 84699999999999998548988768999999--------------9999987---788563477--------------9 Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC Q ss_conf 99999999998355899899999999999500 Q gi|254780421|r 179 QKAKTIFEELAKDNNSPFGISTRSQMILANII 210 (218) Q Consensus 179 ~~A~~~y~~i~~~~~~p~~~r~ra~~~l~~l~ 210 (218) ..|...++++.+|++.|...|..+=+++..|. T Consensus 55 a~aIs~LdeIs~DPNmP~h~RT~Iw~ivS~LE 86 (89) T 2qsb_A 55 ATVLSMLDEMANDPNVPAHGRTDLYTIISKLE 86 (89) T ss_dssp HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH T ss_conf 99999999761399998079989999999985 No 146 >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovarisraelensis atcc 35646} Probab=64.30 E-value=5.5 Score=16.98 Aligned_cols=149 Identities=15% Similarity=0.062 Sum_probs=98.8 Q ss_pred HHHHCCCHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHH Q ss_conf 984138766699999997312----5520699999999999951100577899999987312---689578999999999 Q gi|254780421|r 62 ELFNSNKLDDARSSFEKILSQ----DNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDD---LAPLAVRYAATLQAA 134 (218) Q Consensus 62 ~~~~~~~~~~A~~~l~~l~~~----~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~---~~~~~~~~lA~l~la 134 (218) ......+.+.+...+..+... ............++..+...++...+...+..++... +....+.....+.++ T Consensus 124 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~nl~ 203 (293) T 2qfc_A 124 YVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHA 203 (293) T ss_dssp HHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 99854459999999999987511134077898884000112787676899999999999999874752136888998899 Q ss_pred HHHHCCCCHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH--CCCCCHHHHHHHHHHH Q ss_conf 963026998999999753114-----6423568999999999998899-8999999999983--5589989999999999 Q gi|254780421|r 135 SILVDTSSYEEISKILQKLSE-----PSNPMHQFANEILGISALKFGK-VQKAKTIFEELAK--DNNSPFGISTRSQMIL 206 (218) Q Consensus 135 ~~~~~~~~~d~a~~~l~~~~~-----~~~~~~~~a~ellg~~~~~~Gd-~~~A~~~y~~i~~--~~~~p~~~r~ra~~~l 206 (218) ..+...+++++|...+..... ....+.+.....+|.++...|+ ..+|.+.|+++.. .......+...++..+ T Consensus 204 ~~~~~~~~y~~Al~~~~~ai~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~a~~~~~ka~~i~~~~~~~~~~~~~~~~~ 283 (293) T 2qfc_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKI 283 (293) T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999856999999999999999877989999999999999999809989999999999999999829989999999999 Q ss_pred HHHC Q ss_conf 9500 Q gi|254780421|r 207 ANII 210 (218) Q Consensus 207 ~~l~ 210 (218) ..|. T Consensus 284 ~~~~ 287 (293) T 2qfc_A 284 SRLE 287 (293) T ss_dssp HHC- T ss_pred HHHH T ss_conf 9875 No 147 >3kez_A Putative sugar binding protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482} Probab=59.71 E-value=6.6 Score=16.47 Aligned_cols=29 Identities=10% Similarity=0.178 Sum_probs=19.8 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHH Q ss_conf 99999999995110057789999998731 Q gi|254780421|r 90 LSNMYIASILVAKGDTKNAAEIFLKVAND 118 (218) Q Consensus 90 lA~l~lA~~~~~~g~~~~A~~~l~~i~~~ 118 (218) .|...+|++++-.|++++|++..+.++.. T Consensus 197 aA~al~Arv~l~~~~~~~A~~~a~~vi~~ 225 (461) T 3kez_A 197 AAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461) T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHH T ss_conf 99999999998746899999999999986 No 148 >2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1 Probab=58.86 E-value=6.8 Score=16.38 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=11.4 Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 99999999999889989999999999 Q gi|254780421|r 163 FANEILGISALKFGKVQKAKTIFEEL 188 (218) Q Consensus 163 ~a~ellg~~~~~~Gd~~~A~~~y~~i 188 (218) ...+-+++.+++.|.+++|++-++++ T Consensus 16 H~~~RRAEr~l~~grfdEAIeCH~kA 41 (97) T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKA 41 (97) T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99988899999858789999999999 No 149 >1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, protein structure initiative; 1.60A {Bacillus anthracis str} SCOP: b.100.1.1 PDB: 2oqz_A* 2oqw_A* Probab=57.18 E-value=2.2 Score=19.47 Aligned_cols=42 Identities=7% Similarity=-0.086 Sum_probs=17.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 975199999999999999999999999999999999999999 Q gi|254780421|r 19 CCYKWIAPLLILMILSLAIWFYLFDGSHEKKKNIVGENFAQA 60 (218) Q Consensus 19 ~~yk~ii~~~i~~i~~~~~~~~~~~~~q~~~~~~as~~y~~a 60 (218) +.++.|++.++++++++.++..++.++...+..+..+.+.+. T Consensus 11 ~~~~~il~~i~l~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 52 (254) T 1rz2_A 11 IFFQRILTVVFLGTFFYSVYELGDIFMDYYENRKVMAEAQNI 52 (254) T ss_dssp ------------------------CCCCHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999999999999999988 No 150 >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} Probab=51.38 E-value=9.1 Score=15.63 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=31.7 Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 84138766699999997312552069999999999995110057789999998 Q gi|254780421|r 63 LFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKV 115 (218) Q Consensus 63 ~~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i 115 (218) .++.|+.+.|......+.+ +.-| -.+|...+.+|+++.|...|..+ T Consensus 15 Al~~g~l~~A~~~a~~~~~--~~~W-----~~La~~Al~~g~~~~Ae~~y~~~ 60 (177) T 3mkq_B 15 ALEYGNLDAALDEAKKLND--SITW-----ERLIQEALAQGNASLAEMIYQTQ 60 (177) T ss_dssp HHHTTCHHHHHHHHHHHCC--HHHH-----HHHHHHHHHTTCHHHHHHHHHHT T ss_pred HHHCCCHHHHHHHHHHCCC--HHHH-----HHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9975999999999998388--9999-----99999999879999999999986 No 151 >2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structural genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1 Probab=50.88 E-value=9.2 Score=15.58 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=52.3 Q ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHH Q ss_conf 10057789999998731268957899999999996302699899999975311464235689999999999988998999 Q gi|254780421|r 102 KGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKA 181 (218) Q Consensus 102 ~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A 181 (218) +.....++..+.++++|.+.|..+|..|. ++...|. +++.+.... ...| T Consensus 13 ee~i~~~~~~L~~I~~D~sVPRNIRr~a~--------------e~~~~L~---ne~~~~~vR--------------aa~a 61 (94) T 2qzg_A 13 ADKLKNISSMLEEIVEDTTVPRNIRAAAD--------------NAKNALH---NEEQELIVR--------------SATA 61 (94) T ss_dssp HHHHHHHHHHHHHHHTCTTSCHHHHHHHH--------------HHHHHTT---CTTSCHHHH--------------HHHH T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHH--------------HHHHHHH---CCCCCHHHH--------------HHHH T ss_conf 99999999999998548988768999999--------------9999987---778455578--------------9999 Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCC Q ss_conf 999999983558998999999999995003 Q gi|254780421|r 182 KTIFEELAKDNNSPFGISTRSQMILANIIA 211 (218) Q Consensus 182 ~~~y~~i~~~~~~p~~~r~ra~~~l~~l~~ 211 (218) ...++++.+|++.|...|..+=+++..|.. T Consensus 62 Is~LDeIs~DPNmP~h~RT~Iw~ivS~LE~ 91 (94) T 2qzg_A 62 IQYLDDISEDPNMPIHTRTQIWGIVSELET 91 (94) T ss_dssp HHHHHHHTTCTTCCHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHH T ss_conf 999997623999980789899999999987 No 152 >3jq1_A SUSD superfamily protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482} Probab=49.98 E-value=9.5 Score=15.49 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=26.1 Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC Q ss_conf 99999999999951100577899999987312 Q gi|254780421|r 88 NPLSNMYIASILVAKGDTKNAAEIFLKVANDD 119 (218) Q Consensus 88 a~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~ 119 (218) ...|...+|++++-.+++++|++..+.++... T Consensus 179 k~aA~al~arvyl~~~~~~~A~~~~~~vi~~~ 210 (481) T 3jq1_A 179 QGAAYAALGKIYVYEENWQEAINVLEPLTQNP 210 (481) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHGGGGSTT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99999999999976554799999999998435 No 153 >3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron} Probab=49.94 E-value=9.5 Score=15.49 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=14.9 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHH Q ss_conf 9999999999511005778999999873 Q gi|254780421|r 90 LSNMYIASILVAKGDTKNAAEIFLKVAN 117 (218) Q Consensus 90 lA~l~lA~~~~~~g~~~~A~~~l~~i~~ 117 (218) .|...+|++++-.+++++|.+..+.+++ T Consensus 203 aa~al~arvyl~~~~~~~A~~~a~~vi~ 230 (477) T 3mcx_A 203 AAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477) T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 9999999999985549999999999997 No 154 >2j7a_C Cytochrome C quinol dehydrogenase NRFH; cytochrome C nitrite reductase, NRFA, NAPC/NIRT family, membrane complex, oxidoreductase; HET: HEM LMT; 2.3A {Desulfovibrio vulgaris} PDB: 2vr0_C* Probab=49.75 E-value=3.9 Score=17.89 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=18.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 99999751999999999999999999999 Q gi|254780421|r 15 KMGKCCYKWIAPLLILMILSLAIWFYLFD 43 (218) Q Consensus 15 ~~~~~~yk~ii~~~i~~i~~~~~~~~~~~ 43 (218) .+++...++||++++++++++++..+.+. T Consensus 7 ~~~~~~l~lvl~g~~~g~~~~~~~~~~~~ 35 (159) T 2j7a_C 7 RNGPARLKLVLGGATLGVVALATVAFGMK 35 (159) T ss_dssp -------CCSTTTHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 77854114489999999999999999987 No 155 >3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus} Probab=46.16 E-value=11 Score=15.12 Aligned_cols=29 Identities=21% Similarity=0.143 Sum_probs=13.9 Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 68999999999998899899999999998 Q gi|254780421|r 161 HQFANEILGISALKFGKVQKAKTIFEELA 189 (218) Q Consensus 161 ~~~a~ellg~~~~~~Gd~~~A~~~y~~i~ 189 (218) +..+.-++|.+++-.|+.++|.+...+++ T Consensus 189 k~aA~aLlArv~L~~~~~~~a~~~a~~vi 217 (454) T 3myv_A 189 KYAARALLARIYLYHDDNRKAFDLADQLI 217 (454) T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 99999999999864135489999999999 No 156 >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} Probab=44.36 E-value=12 Score=14.95 Aligned_cols=93 Identities=11% Similarity=-0.005 Sum_probs=51.3 Q ss_pred CCHHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCH Q ss_conf 100577899999987312689578---99999999996302699899999975311464235689999999999988998 Q gi|254780421|r 102 KGDTKNAAEIFLKVANDDLAPLAV---RYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKV 178 (218) Q Consensus 102 ~g~~~~A~~~l~~i~~~~~~~~~~---~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~ 178 (218) .|+.......|+..+..-..+..+ ...+++-+-+.-. ..+..+.-..+.... -++-.+.....-|..+..+|++ T Consensus 36 ~~~~~~l~~l~eR~l~~~~~~~~~~~d~RYl~~wi~~~~~-~~~~~~if~~l~~~~--i~~~~a~~~i~yA~~~e~~~~~ 112 (164) T 2wvi_A 36 GGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRL-CNEPLDMYSYLHNQG--IGVSLAQFYISWAEEYEARENF 112 (164) T ss_dssp ----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH-CSCHHHHHHHHHHTT--SSTTBHHHHHHHHHHHHHTTCH T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHCCCH T ss_conf 8978889999999998655758774389999999999874-110999999999828--7866299999999999984999 Q ss_pred HHHHHHHHHHHHCCCCCHH Q ss_conf 9999999999835589989 Q gi|254780421|r 179 QKAKTIFEELAKDNNSPFG 197 (218) Q Consensus 179 ~~A~~~y~~i~~~~~~p~~ 197 (218) +.|++.|+..+.....|.. T Consensus 113 ~~Ar~Iy~rgl~~~A~P~~ 131 (164) T 2wvi_A 113 RKADAIFQEGIQQKAEPLE 131 (164) T ss_dssp HHHHHHHHHHHHTTCBSHH T ss_pred HHHHHHHHHHHHCCCCCHH T ss_conf 9999999999884699899 No 157 >2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A* Probab=41.79 E-value=13 Score=14.70 Aligned_cols=27 Identities=15% Similarity=0.038 Sum_probs=14.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999 Q gi|254780421|r 24 IAPLLILMILSLAIWFYLFDGSHEKKK 50 (218) Q Consensus 24 ii~~~i~~i~~~~~~~~~~~~~q~~~~ 50 (218) +++.+|++|+++++.-.|..+.+..+. T Consensus 7 lVVIaIIgILaaia~P~~~~~~~~a~~ 33 (158) T 2hi2_A 7 MIVIAIVGILAAVALPAYQDYTARAQV 33 (158) T ss_dssp HHHHHHHHHHHHHHTTTHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999 No 158 >3owq_A LIN1025 protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, unknown function; 2.61A {Listeria innocua} PDB: 3nro_A Probab=34.24 E-value=6.9 Score=16.37 Aligned_cols=25 Identities=12% Similarity=-0.003 Sum_probs=14.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 5889999999975199999999999 Q gi|254780421|r 9 SYKGKCKMGKCCYKWIAPLLILMIL 33 (218) Q Consensus 9 ~~~~~~~~~~~~yk~ii~~~i~~i~ 33 (218) ..+-|-+.|++..+.+.+.++.+++ T Consensus 8 ~k~kk~~~~~k~~~~~~~~~l~vl~ 32 (321) T 3owq_A 8 TKQKKPSTFTKVMKIASVTLLGILF 32 (321) T ss_dssp ------------------------- T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 3456752168999999999999999 No 159 >3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A Probab=31.57 E-value=19 Score=13.70 Aligned_cols=67 Identities=13% Similarity=0.277 Sum_probs=36.4 Q ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH Q ss_conf 778999999873126-8957899999999996302699899999975311464235689999999999 Q gi|254780421|r 106 KNAAEIFLKVANDDL-APLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISA 172 (218) Q Consensus 106 ~~A~~~l~~i~~~~~-~~~~~~~lA~l~la~~~~~~~~~d~a~~~l~~~~~~~~~~~~~a~ellg~~~ 172 (218) +.|+..++.+-...+ .....+.+-+...+.+.+.++.+++|...|..+.++++....+-..++..+- T Consensus 95 ESAl~v~~~I~~E~d~lhe~i~~lik~qAV~vCme~g~fk~A~eilkr~f~~~~~~~~lr~kL~~II~ 162 (211) T 3bqo_A 95 ESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIIS 162 (211) T ss_dssp HHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH T ss_conf 99999999998614435999999999999999998164578999999985689876489999999987 No 160 >1oqw_A Fimbrial protein; type IV pilin, fiber-forming protein, adhesion, pseudomonas aerugionosa, PAK pilin, cell adhesion; 2.00A {Pseudomonas aeruginosa} SCOP: d.24.1.1 Probab=30.80 E-value=19 Score=13.62 Aligned_cols=27 Identities=11% Similarity=-0.032 Sum_probs=14.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999999999999999999999999999 Q gi|254780421|r 24 IAPLLILMILSLAIWFYLFDGSHEKKK 50 (218) Q Consensus 24 ii~~~i~~i~~~~~~~~~~~~~q~~~~ 50 (218) +++.+|++|++.++.-.|..+....+. T Consensus 7 mvViaIigILaaiaiP~~~~~~~~ar~ 33 (144) T 1oqw_A 7 MIVVAIIGILAAIAIPQYQNYVARSEG 33 (144) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999999999999 No 161 >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae YJM789} Probab=25.86 E-value=23 Score=13.08 Aligned_cols=99 Identities=16% Similarity=0.089 Sum_probs=51.0 Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCH Q ss_conf 41387666999999973125520699999999999951100577899999987312689578999999999963026998 Q gi|254780421|r 64 FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSY 143 (218) Q Consensus 64 ~~~~~~~~A~~~l~~l~~~~~~~ya~lA~l~lA~~~~~~g~~~~A~~~l~~i~~~~~~~~~~~~lA~l~la~~~~~~~~~ 143 (218) ++.++.++|....+.+ ++ -...- .+|..++..|+++-|...|...- |- ..+. .++.-.++. T Consensus 663 l~~g~~~~A~~~~~~~----~~-~~~W~--~La~~al~~~~~~~A~~~y~~~~-d~------~~l~-----~l~~~~gd~ 723 (814) T 3mkq_A 663 LKVGQLTLARDLLTDE----SA-EMKWR--ALGDASLQRFNFKLAIEAFTNAH-DL------ESLF-----LLHSSFNNK 723 (814) T ss_dssp HHHTCHHHHHHHHTTC----CC-HHHHH--HHHHHHHHTTCHHHHHHHHHHHT-CH------HHHH-----HHHHHTTCH T ss_pred HHCCCHHHHHHHHHHC----CC-HHHHH--HHHHHHHHCCCHHHHHHHHHHHC-CH------HHHH-----HHHHHHCCH T ss_conf 7719999999999860----87-89999--99999998199899999999844-76------6779-----999850999 Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 99999975311464235689999999999988998999999999 Q gi|254780421|r 144 EEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEE 187 (218) Q Consensus 144 d~a~~~l~~~~~~~~~~~~~a~ellg~~~~~~Gd~~~A~~~y~~ 187 (218) +.. ..+..+....+.+ .+-..+|+..||.++|.+.|.+ T Consensus 724 ~~l-~~la~~a~~~~~~-----~~a~~~~l~~g~~~~ai~~l~~ 761 (814) T 3mkq_A 724 EGL-VTLAKDAETTGKF-----NLAFNAYWIAGDIQGAKDLLIK 761 (814) T ss_dssp HHH-HHHHHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHH T ss_pred HHH-HHHHHHHHHCCCH-----HHHHHHHHHCCCHHHHHHHHHH T ss_conf 999-9999999886987-----8999999884999999999998 No 162 >1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1 Probab=21.54 E-value=28 Score=12.56 Aligned_cols=29 Identities=14% Similarity=0.008 Sum_probs=13.2 Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHH Q ss_conf 69999999999995110057789999998 Q gi|254780421|r 87 YNPLSNMYIASILVAKGDTKNAAEIFLKV 115 (218) Q Consensus 87 ya~lA~l~lA~~~~~~g~~~~A~~~l~~i 115 (218) ..++..+..|--.-..|++++|+..|... T Consensus 13 ~~A~~l~~~Av~~D~~g~y~eA~~~Y~~a 41 (93) T 1wfd_A 13 TAAVAVLKRAVELDAESRYQQALVCYQEG 41 (93) T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 99999999999999869999999999999 No 163 >2ahm_E Replicase NSP8, replicase polyprotein 1AB, heavy chain; SARS-COV, non-structural protein, super-complex, hexadecamer, viral protein; 2.40A {Sars coronavirus} SCOP: d.302.1.1 Probab=21.39 E-value=16 Score=14.07 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=4.8 Q ss_pred HHHHHHHHHHHHHC Q ss_conf 77899999987312 Q gi|254780421|r 106 KNAAEIFLKVANDD 119 (218) Q Consensus 106 ~~A~~~l~~i~~~~ 119 (218) +.|...|+..+++. T Consensus 21 E~A~~~Ye~a~~~g 34 (203) T 2ahm_E 21 ATAQEAYEQAVANG 34 (203) T ss_dssp -------------- T ss_pred HHHHHHHHHHHHCC T ss_conf 99999999998759 No 164 >3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B Probab=20.37 E-value=17 Score=13.86 Aligned_cols=22 Identities=18% Similarity=-0.031 Sum_probs=8.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999999999999999 Q gi|254780421|r 24 IAPLLILMILSLAIWFYLFDGS 45 (218) Q Consensus 24 ii~~~i~~i~~~~~~~~~~~~~ 45 (218) |+++++++.+++.+||.|+... T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (407) T 3h9i_A 7 IIGSMIAGGIISAAGFTWVAKA 28 (407) T ss_dssp ---------------------- T ss_pred HHHHHHHHHHHHHHHHHHCCCC T ss_conf 9999999999999887431367 Done!