RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780421|ref|YP_003064834.1| hypothetical protein
CLIBASIA_01530 [Candidatus Liberibacter asiaticus str. psy62]
(218 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.6 bits (91), Expect = 5e-04
Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
Query: 113 LKVANDDLAP-LAVRYAATLQ 132
LK+ DD AP LA++ AT++
Sbjct: 29 LKLYADDSAPALAIK--ATME 47
Score = 33.1 bits (74), Expect = 0.050
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 7/33 (21%)
Query: 172 ALKFGKVQKAKTIFEELAKDNNSPFGISTRSQM 204
ALK K+Q + ++ D+++P ++ ++ M
Sbjct: 21 ALK--KLQASLKLY----ADDSAP-ALAIKATM 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 39.5 bits (92), Expect = 6e-04
Identities = 35/217 (16%), Positives = 72/217 (33%), Gaps = 72/217 (33%)
Query: 43 DGSHEKKKNIVGENFAQALELFNSNKLDDARSS--FEKILSQDNKLYNPLSNMYIASILV 100
D + K K ++ +N+ A + D +S F + + +L +I
Sbjct: 113 DTTLVKTKELI-KNYITARIMAKRP-FDKKSNSALFRAVGEGNAQLV---------AIFG 161
Query: 101 AKGDTKNA----AEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEI-SK---ILQK 152
+G+T + +++ + + + L A TL ++ T E++ ++ IL+
Sbjct: 162 GQGNTDDYFEELRDLY-QTYHVLVGDLIKFSAETLS--ELIRTTLDAEKVFTQGLNILEW 218
Query: 153 LSEP--------------SNPMH---QFAN-----EILGISALKFGKVQK---------- 180
L P S P+ Q A+ ++LG + G+++
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT---PGELRSYLKGATGHSQ 275
Query: 181 ----AKTI--------FEELAKDNNSP-FGISTRSQM 204
A I F + + F I R
Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312
Score = 36.5 bits (84), Expect = 0.004
Identities = 31/202 (15%), Positives = 56/202 (27%), Gaps = 78/202 (38%)
Query: 55 ENFAQA------LEL------FNSNKL-DDARSSFEKILSQDNKLYNPLSNMYIASILVA 101
E FA EL + S+ + F+++L L
Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL---------------NLCL-- 88
Query: 102 KGDTKNAAEI-FLKVANDDLAPLAVRY-----AATLQAASILVDTSSYEEISKILQKLSE 155
E +L +D+ LA + ++ ++ +Y + ++
Sbjct: 89 -----TEFENCYL--EGNDIHALAAKLLQENDTTLVKTKELI---KNYITARIMAKR--- 135
Query: 156 PSNPMHQFANEILGISALKFGKVQ--KAK--TIF----------EELAK--DNNSPFGIS 199
P + SAL F V A+ IF EEL +
Sbjct: 136 PFDKKSN--------SAL-FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL-VG 185
Query: 200 ---TRSQMILANIIASDQRNKK 218
S L+ +I + +K
Sbjct: 186 DLIKFSAETLSELIRTTLDAEK 207
Score = 36.5 bits (84), Expect = 0.005
Identities = 41/229 (17%), Positives = 73/229 (31%), Gaps = 93/229 (40%)
Query: 57 FAQALEL----FNSNKLDD-------AR--SSFEKILSQDNKLYNPLSNMYIASILVAKG 103
F Q L L F + L+ A+ + L + +L + N A I+ +
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL---IKNYITARIMAKRP 136
Query: 104 DTKNAAEIFLKVANDDLAPL-AV--------RY----------------------AATLQ 132
K + + + A L A+ Y A TL
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 133 AASILVDTSSYEEI-SK---ILQKLSEP--------------SNPMH---QFAN-----E 166
++ T E++ ++ IL+ L P S P+ Q A+ +
Sbjct: 197 --ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 167 ILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQ-MILANIIA-SD 213
+LG + G+++ L G + SQ ++ A IA +D
Sbjct: 255 LLGFT---PGELR------SYLK-------GATGHSQGLVTAVAIAETD 287
Score = 29.9 bits (67), Expect = 0.47
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 23/70 (32%)
Query: 120 LAPLAVRYAATLQAASILVDTSSY-------EEISKILQKLS-------EPSNPMH---Q 162
PL + + +L+ +LV T+S+ E+ +KIL + + EP+ P +
Sbjct: 6 TRPLTLSHG-SLEH-VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 163 FANEILGISA 172
F LG +
Sbjct: 64 F----LGYVS 69
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein structure initiative; 2.40A
{Vibrio parahaemolyticus rimd 2210633} SCOP: e.61.1.1
Length = 273
Score = 36.7 bits (84), Expect = 0.005
Identities = 13/133 (9%), Positives = 40/133 (30%), Gaps = 6/133 (4%)
Query: 58 AQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVAN 117
Q + +L A + + K + S+ +L GD + A E ++
Sbjct: 2 TQWKNALSEGQLQQALELLIEAIKASPKDASLRSSF--IELLCIDGDFERADEQLMQSI- 58
Query: 118 DDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGK 177
L P Q ++ + ++ ++ + + ++
Sbjct: 59 -KLFPEY--LPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD 115
Query: 178 VQKAKTIFEELAK 190
++ + ++ +
Sbjct: 116 YEQVSELALQIEE 128
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, unfolded protein
response; 2.51A {Mus musculus}
Length = 359
Score = 35.5 bits (81), Expect = 0.009
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKV 115
+L + +L DA S F + D Y A++ +A G +K A KV
Sbjct: 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR--ATVFLAMGKSKAALPDLTKV 63
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 35.0 bits (79), Expect = 0.014
Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 2/63 (3%)
Query: 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVA 116
A + + + A ++ Q+ N + ++SI +A
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60
Query: 117 NDD 119
+
Sbjct: 61 KQN 63
Score = 32.3 bits (72), Expect = 0.092
Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 7/128 (5%)
Query: 60 ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDD 119
A + +D A ++ + + + N+ A+ L KG A + +
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL--ANALKEKGSVAEAEDCYNTALRLC 301
Query: 120 LAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQ 179
+ A+I + + EE ++ +K E P A+ L + GK+Q
Sbjct: 302 ----PTHADSLNNLANIKREQGNIEEAVRLYRKALE-VFPEFAAAHSNLASVLQQQGKLQ 356
Query: 180 KAKTIFEE 187
+A ++E
Sbjct: 357 EALMHYKE 364
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 34.8 bits (80), Expect = 0.015
Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 6/126 (4%)
Query: 55 ENFAQALELFNSNKLDDARSSFEKILSQD-NKLYNPLSNMYIASILVAKGDTKNAAEIFL 113
+ A + + K DDA F L N +Y P + ++ A + + A F
Sbjct: 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFR 63
Query: 114 KVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSE--PSNPMHQFANEILGIS 171
+ + L+ E + LQ+++ P + + A E L
Sbjct: 64 DLVSRYPTHDKAAG-GLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL--Q 120
Query: 172 ALKFGK 177
+++ G+
Sbjct: 121 SIRLGQ 126
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 2c0m_A 2c0l_A
Length = 368
Score = 34.5 bits (78), Expect = 0.018
Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKV 115
F + L L +A FE + QD K + + Y+ + A +
Sbjct: 68 FEEGLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAENEQELLAISALRRC 124
Score = 31.0 bits (69), Expect = 0.20
Identities = 28/208 (13%), Positives = 60/208 (28%), Gaps = 6/208 (2%)
Query: 3 SNNDANSYKGKCKMGKCCYKWIAPLLILMI-LSLAIWFYLFDGSHEKKKNIVGENFAQAL 61
N A + + +L + + A + +G +
Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 189
Query: 62 ELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLA 121
L + + + + F + D +P + + G+ A + F +
Sbjct: 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249
Query: 122 PLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKA 181
+ + + L + + EE ++ E P + + LGIS + G ++A
Sbjct: 250 DYLLWN----KLGATLANGNQSEEAVAAYRRALE-LQPGYIRSRYNLGISCINLGAHREA 304
Query: 182 KTIFEELAKDNNSPFGISTRSQMILANI 209
F E G + NI
Sbjct: 305 VEHFLEALNMQRKSRGPRGEGGAMSENI 332
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 34.1 bits (77), Expect = 0.022
Identities = 18/146 (12%), Positives = 41/146 (28%), Gaps = 6/146 (4%)
Query: 45 SHEKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGD 104
S + + + + A + + ++ +D ++ LV
Sbjct: 14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP--FHASCLPVHIGTLVELNK 71
Query: 105 TKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFA 164
+ K+ DL P + ++V E + L K + + A
Sbjct: 72 ANELFYLSHKLV--DLYPSNPVSWFAVGCYYLMVG-HKNEHARRYLSKATT-LEKTYGPA 127
Query: 165 NEILGISALKFGKVQKAKTIFEELAK 190
G S + +A + A+
Sbjct: 128 WIAYGHSFAVESEHDQAMAAYFTAAQ 153
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 34.2 bits (77), Expect = 0.022
Identities = 7/65 (10%), Positives = 15/65 (23%), Gaps = 2/65 (3%)
Query: 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLK 114
+ L + L +A +FE + + ++ A
Sbjct: 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL--GLTQAENEKDGLAIIALNH 80
Query: 115 VANDD 119
D
Sbjct: 81 ARMLD 85
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCNACYLATION; HET: NHE; 2.10A {Xanthomonas campestris
PV} PDB: 2jlb_A* 2vsn_A*
Length = 568
Score = 33.3 bits (75), Expect = 0.039
Identities = 8/77 (10%), Positives = 23/77 (29%), Gaps = 4/77 (5%)
Query: 60 ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKV--AN 117
A + ++ L+ ++ + + + AA + + A
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL--GRVRWTQQRHAEAAVLLQQASDAA 87
Query: 118 DDLAPLAVRYAATLQAA 134
+ +A+ L+ A
Sbjct: 88 PEHPGIALWLGHALEDA 104
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 33.3 bits (75), Expect = 0.049
Identities = 6/59 (10%), Positives = 17/59 (28%), Gaps = 2/59 (3%)
Query: 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKV 115
QA + F + ++A + + + + N + + A +
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNR--SLAYLRTECYGYALGDATRA 66
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric regulation, phosphoprotein,
TPR repeat; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A
3fp4_A
Length = 537
Score = 32.4 bits (72), Expect = 0.069
Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 13/152 (8%)
Query: 47 EKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTK 106
V A L+ K ++ + F + + P + A IL +GD
Sbjct: 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT--LPEVPTFFAEILTDRGDFD 395
Query: 107 NAAEIFLKVA--NDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSE--------- 155
A + + + + V + A+IL SS + +K +
Sbjct: 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455
Query: 156 PSNPMHQFANEILGISALKFGKVQKAKTIFEE 187
+P + A L L+ K+ +A +FE+
Sbjct: 456 ELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487
Score = 31.3 bits (69), Expect = 0.18
Identities = 9/69 (13%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 47 EKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTK 106
+++ + + F + ++A ++ + D SN+ ++ ++ GD +
Sbjct: 19 SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNI--SACYISTGDLE 76
Query: 107 NAAEIFLKV 115
E K
Sbjct: 77 KVIEFTTKA 85
>2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease,
hydrolase, metalloprotease; 1.82A {Serratia
proteamaculans}
Length = 341
Score = 29.6 bits (66), Expect = 0.59
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 93 MYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYA----ATLQAASILVDTSSYEEISK 148
Y+A+ + + A I+ D P +A T++ A D+ +++ +
Sbjct: 274 FYLAATALGGYAWEKAGYIWYDTLCDKALPQDADFATFARTTVKHAEQRFDSKVAQKVQQ 333
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 29.2 bits (63), Expect = 0.69
Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 12/116 (10%)
Query: 55 ENFAQAL-----ELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAA 109
+ +A AL + F + K DDA + L +P+ +++ V+ GD K
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVV 59
Query: 110 EIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFAN 165
E+ K +L P + L+ AS + + L LS +
Sbjct: 60 EMSTKAL--ELKPDYSK--VLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIE 111
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 29.1 bits (64), Expect = 0.79
Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 59 QALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKV 115
Q LF K +A + + + ++++ + +N A + + A +
Sbjct: 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR--ALCYLKMQQPEQALADCRRA 64
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 28.9 bits (63), Expect = 0.90
Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 54 GENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFL 113
G+ + E + A +F K + ++ + P N A++L + + + A +
Sbjct: 27 GQQMGRGSEF---GDYEKAAEAFTKAIEENKEDAIPYINF--ANLLSSVNELERALAFYD 81
Query: 114 K 114
K
Sbjct: 82 K 82
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 28.2 bits (61), Expect = 1.5
Identities = 15/140 (10%), Positives = 50/140 (35%), Gaps = 6/140 (4%)
Query: 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLK 114
+ ++ + + +D AR ++E++++Q +Y + + ++F +
Sbjct: 14 DAWSILIREAQNQPIDKARKTYERLVAQFPSSGR-FWKLY-IEAEIKAKNYDKVEKLFQR 71
Query: 115 -VANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISAL 173
+ L Y + ++ + S E++++ + + + + +
Sbjct: 72 CLMKVLHIDLWKCYLSYVRETKGKLP-SYKEKMAQAYDF--ALDKIGMEIMSYQIWVDYI 128
Query: 174 KFGKVQKAKTIFEELAKDNN 193
F K +A + E +
Sbjct: 129 NFLKGVEAVGSYAENQRITA 148
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus HB27}
Length = 217
Score = 27.5 bits (59), Expect = 2.2
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 64 FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAE 110
+ +LD+A + + K L Q K + AS L+ KG + AA
Sbjct: 162 LSMGRLDEALAQYAKALEQAPKDLDLRVRY--ASALLLKGKAEEAAR 206
Score = 26.8 bits (57), Expect = 4.5
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNM 93
++L+ + D A + FE+ L ++ + L +
Sbjct: 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWL 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility
protein; secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 27.4 bits (59), Expect = 2.3
Identities = 10/47 (21%), Positives = 13/47 (27%)
Query: 47 EKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNM 93
EK + A+E A +S E L D K
Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVR 48
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization
domain TIN2, ADP-ribosylation, alternative splicing,
cell cycle, cell division; 2.00A {Homo sapiens} SCOP:
a.146.1.1 PDB: 1h6o_A
Length = 211
Score = 27.1 bits (60), Expect = 3.5
Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 149 ILQKLSEPSNPMHQFANEILGISA----LKFGKVQKAKTIFEELAKDNNSPFGISTRSQM 204
I + + + +H+ ++ I A ++ G ++A+ +FE + D NS +
Sbjct: 100 IWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSH----MPFKS 155
Query: 205 ILANII 210
L II
Sbjct: 156 KLLMII 161
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_A
Length = 325
Score = 26.9 bits (59), Expect = 3.6
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 49 KKNIVGENFAQALELFNSNKLDDARSSFEKIL 80
++V E + + F NK D A F + +
Sbjct: 110 GLDVVNEKMNEGYKNFKLNKPDIAIECFREAI 141
>2pk0_A Serine/threonine protein phosphatase STP1; signaling motif,
signaling protein; 2.65A {Streptococcus agalactiae A909}
Length = 250
Score = 26.9 bits (58), Expect = 4.0
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 83 DNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVAND 118
+ L N LSN IA++L + + + + +AN
Sbjct: 196 SDGLTNMLSNADIATVLTQEKTLDDKNQDLITLANH 231
>3dd7_A DOC, death on curing protein; all alpha, ribosome inhibitor; HET:
MSE; 1.70A {Enterobacteria phage P1} PDB: 3dd9_A
Length = 135
Score = 26.8 bits (59), Expect = 4.1
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 108 AAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPM 160
+A +FL+ + T+ AA+ S ++ L++L ++P+
Sbjct: 79 SALLFLRRNGVQVFDSPELADLTVGAAT---GEISVSSVADTLRRLYGSADPL 128
>2r5s_A Uncharacterized protein VP0806; APC090868.1, structural genomics,
PSI-2, protein structure initiative; HET: MES; 2.14A
{Vibrio parahaemolyticus rimd 2210633}
Length = 176
Score = 26.6 bits (57), Expect = 4.4
Identities = 4/38 (10%), Positives = 10/38 (26%)
Query: 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMY 94
Q EL + A + + + + +
Sbjct: 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKA 47
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 26.5 bits (58), Expect = 4.7
Identities = 5/37 (13%), Positives = 15/37 (40%)
Query: 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNM 93
+ L + L +A +FE + ++ + ++
Sbjct: 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL 57
>2r6g_F Maltose transport system permease protein MALF; ABC transporter,
catalytic intermediate, E. coli maltose transporter,
MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP:
e.70.1.1 f.58.1.1 PDB: 3fh6_F
Length = 514
Score = 26.3 bits (57), Expect = 5.0
Identities = 17/145 (11%), Positives = 47/145 (32%), Gaps = 24/145 (16%)
Query: 21 YKWIAPLLILMIL--------SLAIWFYLFDGSHEKKKNIVGENFAQALELFNSNKLDDA 72
++++ P + M L ++AI F + ++ F +A E+
Sbjct: 65 WRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTN-------QLTFERAQEVLLDRSWQAG 117
Query: 73 RSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAP--------LA 124
++ + ++ LS+ ++ K E L++ P +
Sbjct: 118 KTYNFGLYPAGDEWQLALSDGETGKNYLS-DAFKFGGEQKLQLKETTAQPEGERANLRVI 176
Query: 125 VRYAATLQAASILVDTSSYEEISKI 149
+ L + ++ + +S +
Sbjct: 177 TQNRQALSDITAILPDGNKVMMSSL 201
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment,
structural genomics, mutant, structural genomics
consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB:
2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A
2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A*
2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Length = 373
Score = 26.2 bits (57), Expect = 5.7
Identities = 7/47 (14%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 136 ILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAK 182
VD ++E+ ++ + + ++ + + ++++G FG+V +
Sbjct: 21 TFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGE--FGEVCSGR 65
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 25.9 bits (56), Expect = 7.6
Identities = 5/58 (8%), Positives = 16/58 (27%), Gaps = 2/58 (3%)
Query: 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLK 114
+ +A + D A + +K + + + + K+ +
Sbjct: 311 YRRAQGWQGLKEYDQALADLKKAQEIAPE--DKAIQAELLKVKQKIKAQKDKEKAAYA 366
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.7 bits (55), Expect = 7.8
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 13/44 (29%)
Query: 144 EEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEE 187
EE K LQ+L S M Q E KAK EE
Sbjct: 92 EEQRKRLQELDAASKVMEQEWRE-------------KAKKDLEE 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1
Length = 125
Score = 25.5 bits (55), Expect = 9.1
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKV 115
+ + D+A ++K L D N+ + +GD A E + K
Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL--GNAYYKQGDYDEAIEYYQKA 69
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 25.6 bits (56), Expect = 9.8
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Query: 42 FDGSHEKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVA 101
F+ + + + L+N + ++A + +++ YN A L
Sbjct: 29 FEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88
Query: 102 -KGDTKNAAEIFLKVA 116
+G A +
Sbjct: 89 IEGKEVEAEIAEARAK 104
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.316 0.131 0.364
Gapped
Lambda K H
0.267 0.0563 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,665,543
Number of extensions: 71157
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 70
Length of query: 218
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 129
Effective length of database: 3,535,514
Effective search space: 456081306
Effective search space used: 456081306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.3 bits)