RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780421|ref|YP_003064834.1| hypothetical protein CLIBASIA_01530 [Candidatus Liberibacter asiaticus str. psy62] (218 letters) >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 39.6 bits (91), Expect = 5e-04 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 3/21 (14%) Query: 113 LKVANDDLAP-LAVRYAATLQ 132 LK+ DD AP LA++ AT++ Sbjct: 29 LKLYADDSAPALAIK--ATME 47 Score = 33.1 bits (74), Expect = 0.050 Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 7/33 (21%) Query: 172 ALKFGKVQKAKTIFEELAKDNNSPFGISTRSQM 204 ALK K+Q + ++ D+++P ++ ++ M Sbjct: 21 ALK--KLQASLKLY----ADDSAP-ALAIKATM 46 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 39.5 bits (92), Expect = 6e-04 Identities = 35/217 (16%), Positives = 72/217 (33%), Gaps = 72/217 (33%) Query: 43 DGSHEKKKNIVGENFAQALELFNSNKLDDARSS--FEKILSQDNKLYNPLSNMYIASILV 100 D + K K ++ +N+ A + D +S F + + +L +I Sbjct: 113 DTTLVKTKELI-KNYITARIMAKRP-FDKKSNSALFRAVGEGNAQLV---------AIFG 161 Query: 101 AKGDTKNA----AEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEI-SK---ILQK 152 +G+T + +++ + + + L A TL ++ T E++ ++ IL+ Sbjct: 162 GQGNTDDYFEELRDLY-QTYHVLVGDLIKFSAETLS--ELIRTTLDAEKVFTQGLNILEW 218 Query: 153 LSEP--------------SNPMH---QFAN-----EILGISALKFGKVQK---------- 180 L P S P+ Q A+ ++LG + G+++ Sbjct: 219 LENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT---PGELRSYLKGATGHSQ 275 Query: 181 ----AKTI--------FEELAKDNNSP-FGISTRSQM 204 A I F + + F I R Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE 312 Score = 36.5 bits (84), Expect = 0.004 Identities = 31/202 (15%), Positives = 56/202 (27%), Gaps = 78/202 (38%) Query: 55 ENFAQA------LEL------FNSNKL-DDARSSFEKILSQDNKLYNPLSNMYIASILVA 101 E FA EL + S+ + F+++L L Sbjct: 46 EGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL---------------NLCL-- 88 Query: 102 KGDTKNAAEI-FLKVANDDLAPLAVRY-----AATLQAASILVDTSSYEEISKILQKLSE 155 E +L +D+ LA + ++ ++ +Y + ++ Sbjct: 89 -----TEFENCYL--EGNDIHALAAKLLQENDTTLVKTKELI---KNYITARIMAKR--- 135 Query: 156 PSNPMHQFANEILGISALKFGKVQ--KAK--TIF----------EELAK--DNNSPFGIS 199 P + SAL F V A+ IF EEL + Sbjct: 136 PFDKKSN--------SAL-FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVL-VG 185 Query: 200 ---TRSQMILANIIASDQRNKK 218 S L+ +I + +K Sbjct: 186 DLIKFSAETLSELIRTTLDAEK 207 Score = 36.5 bits (84), Expect = 0.005 Identities = 41/229 (17%), Positives = 73/229 (31%), Gaps = 93/229 (40%) Query: 57 FAQALEL----FNSNKLDD-------AR--SSFEKILSQDNKLYNPLSNMYIASILVAKG 103 F Q L L F + L+ A+ + L + +L + N A I+ + Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL---IKNYITARIMAKRP 136 Query: 104 DTKNAAEIFLKVANDDLAPL-AV--------RY----------------------AATLQ 132 K + + + A L A+ Y A TL Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196 Query: 133 AASILVDTSSYEEI-SK---ILQKLSEP--------------SNPMH---QFAN-----E 166 ++ T E++ ++ IL+ L P S P+ Q A+ + Sbjct: 197 --ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254 Query: 167 ILGISALKFGKVQKAKTIFEELAKDNNSPFGISTRSQ-MILANIIA-SD 213 +LG + G+++ L G + SQ ++ A IA +D Sbjct: 255 LLGFT---PGELR------SYLK-------GATGHSQGLVTAVAIAETD 287 Score = 29.9 bits (67), Expect = 0.47 Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 23/70 (32%) Query: 120 LAPLAVRYAATLQAASILVDTSSY-------EEISKILQKLS-------EPSNPMH---Q 162 PL + + +L+ +LV T+S+ E+ +KIL + + EP+ P + Sbjct: 6 TRPLTLSHG-SLEH-VLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63 Query: 163 FANEILGISA 172 F LG + Sbjct: 64 F----LGYVS 69 >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein structure initiative; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: e.61.1.1 Length = 273 Score = 36.7 bits (84), Expect = 0.005 Identities = 13/133 (9%), Positives = 40/133 (30%), Gaps = 6/133 (4%) Query: 58 AQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVAN 117 Q + +L A + + K + S+ +L GD + A E ++ Sbjct: 2 TQWKNALSEGQLQQALELLIEAIKASPKDASLRSSF--IELLCIDGDFERADEQLMQSI- 58 Query: 118 DDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGK 177 L P Q ++ + ++ ++ + + ++ Sbjct: 59 -KLFPEY--LPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD 115 Query: 178 VQKAKTIFEELAK 190 ++ + ++ + Sbjct: 116 YEQVSELALQIEE 128 >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, unfolded protein response; 2.51A {Mus musculus} Length = 359 Score = 35.5 bits (81), Expect = 0.009 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKV 115 +L + +L DA S F + D Y A++ +A G +K A KV Sbjct: 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRR--ATVFLAMGKSKAALPDLTKV 63 >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Score = 35.0 bits (79), Expect = 0.014 Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 2/63 (3%) Query: 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVA 116 A + + + A ++ Q+ N + ++SI +A Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAI 60 Query: 117 NDD 119 + Sbjct: 61 KQN 63 Score = 32.3 bits (72), Expect = 0.092 Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 7/128 (5%) Query: 60 ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDD 119 A + +D A ++ + + + N+ A+ L KG A + + Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL--ANALKEKGSVAEAEDCYNTALRLC 301 Query: 120 LAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQ 179 + A+I + + EE ++ +K E P A+ L + GK+Q Sbjct: 302 ----PTHADSLNNLANIKREQGNIEEAVRLYRKALE-VFPEFAAAHSNLASVLQQQGKLQ 356 Query: 180 KAKTIFEE 187 +A ++E Sbjct: 357 EALMHYKE 364 >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129 Score = 34.8 bits (80), Expect = 0.015 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 6/126 (4%) Query: 55 ENFAQALELFNSNKLDDARSSFEKILSQD-NKLYNPLSNMYIASILVAKGDTKNAAEIFL 113 + A + + K DDA F L N +Y P + ++ A + + A F Sbjct: 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFR 63 Query: 114 KVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSE--PSNPMHQFANEILGIS 171 + + L+ E + LQ+++ P + + A E L Sbjct: 64 DLVSRYPTHDKAAG-GLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL--Q 120 Query: 172 ALKFGK 177 +++ G+ Sbjct: 121 SIRLGQ 126 >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 2c0m_A 2c0l_A Length = 368 Score = 34.5 bits (78), Expect = 0.018 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 2/59 (3%) Query: 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKV 115 F + L L +A FE + QD K + + Y+ + A + Sbjct: 68 FEEGLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGTTQAENEQELLAISALRRC 124 Score = 31.0 bits (69), Expect = 0.20 Identities = 28/208 (13%), Positives = 60/208 (28%), Gaps = 6/208 (2%) Query: 3 SNNDANSYKGKCKMGKCCYKWIAPLLILMI-LSLAIWFYLFDGSHEKKKNIVGENFAQAL 61 N A + + +L + + A + +G + Sbjct: 130 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 189 Query: 62 ELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLA 121 L + + + + F + D +P + + G+ A + F + Sbjct: 190 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249 Query: 122 PLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKA 181 + + + L + + EE ++ E P + + LGIS + G ++A Sbjct: 250 DYLLWN----KLGATLANGNQSEEAVAAYRRALE-LQPGYIRSRYNLGISCINLGAHREA 304 Query: 182 KTIFEELAKDNNSPFGISTRSQMILANI 209 F E G + NI Sbjct: 305 VEHFLEALNMQRKSRGPRGEGGAMSENI 332 >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Score = 34.1 bits (77), Expect = 0.022 Identities = 18/146 (12%), Positives = 41/146 (28%), Gaps = 6/146 (4%) Query: 45 SHEKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGD 104 S + + + + A + + ++ +D ++ LV Sbjct: 14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP--FHASCLPVHIGTLVELNK 71 Query: 105 TKNAAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFA 164 + K+ DL P + ++V E + L K + + A Sbjct: 72 ANELFYLSHKLV--DLYPSNPVSWFAVGCYYLMVG-HKNEHARRYLSKATT-LEKTYGPA 127 Query: 165 NEILGISALKFGKVQKAKTIFEELAK 190 G S + +A + A+ Sbjct: 128 WIAYGHSFAVESEHDQAMAAYFTAAQ 153 >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 Score = 34.2 bits (77), Expect = 0.022 Identities = 7/65 (10%), Positives = 15/65 (23%), Gaps = 2/65 (3%) Query: 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLK 114 + L + L +A +FE + + ++ A Sbjct: 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL--GLTQAENEKDGLAIIALNH 80 Query: 115 VANDD 119 D Sbjct: 81 ARMLD 85 >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCNACYLATION; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2vsn_A* Length = 568 Score = 33.3 bits (75), Expect = 0.039 Identities = 8/77 (10%), Positives = 23/77 (29%), Gaps = 4/77 (5%) Query: 60 ALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKV--AN 117 A + ++ L+ ++ + + + AA + + A Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL--GRVRWTQQRHAEAAVLLQQASDAA 87 Query: 118 DDLAPLAVRYAATLQAA 134 + +A+ L+ A Sbjct: 88 PEHPGIALWLGHALEDA 104 >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477 Score = 33.3 bits (75), Expect = 0.049 Identities = 6/59 (10%), Positives = 17/59 (28%), Gaps = 2/59 (3%) Query: 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKV 115 QA + F + ++A + + + + N + + A + Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNR--SLAYLRTECYGYALGDATRA 66 >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric regulation, phosphoprotein, TPR repeat; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A Length = 537 Score = 32.4 bits (72), Expect = 0.069 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 13/152 (8%) Query: 47 EKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTK 106 V A L+ K ++ + F + + P + A IL +GD Sbjct: 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT--LPEVPTFFAEILTDRGDFD 395 Query: 107 NAAEIFLKVA--NDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSE--------- 155 A + + + + V + A+IL SS + +K + Sbjct: 396 TAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 Query: 156 PSNPMHQFANEILGISALKFGKVQKAKTIFEE 187 +P + A L L+ K+ +A +FE+ Sbjct: 456 ELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487 Score = 31.3 bits (69), Expect = 0.18 Identities = 9/69 (13%), Positives = 26/69 (37%), Gaps = 2/69 (2%) Query: 47 EKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTK 106 +++ + + F + ++A ++ + D SN+ ++ ++ GD + Sbjct: 19 SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNI--SACYISTGDLE 76 Query: 107 NAAEIFLKV 115 E K Sbjct: 77 KVIEFTTKA 85 >2vqx_A Metalloproteinase; thermolysin-like structure, zinc, protease, hydrolase, metalloprotease; 1.82A {Serratia proteamaculans} Length = 341 Score = 29.6 bits (66), Expect = 0.59 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 4/60 (6%) Query: 93 MYIASILVAKGDTKNAAEIFLKVANDDLAPLAVRYA----ATLQAASILVDTSSYEEISK 148 Y+A+ + + A I+ D P +A T++ A D+ +++ + Sbjct: 274 FYLAATALGGYAWEKAGYIWYDTLCDKALPQDADFATFARTTVKHAEQRFDSKVAQKVQQ 333 >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Score = 29.2 bits (63), Expect = 0.69 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 12/116 (10%) Query: 55 ENFAQAL-----ELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAA 109 + +A AL + F + K DDA + L +P+ +++ V+ GD K Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVV 59 Query: 110 EIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFAN 165 E+ K +L P + L+ AS + + L LS + Sbjct: 60 EMSTKAL--ELKPDYSK--VLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIE 111 >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281 Score = 29.1 bits (64), Expect = 0.79 Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 2/57 (3%) Query: 59 QALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKV 115 Q LF K +A + + + ++++ + +N A + + A + Sbjct: 10 QGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNR--ALCYLKMQQPEQALADCRRA 64 >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 Score = 28.9 bits (63), Expect = 0.90 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 54 GENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFL 113 G+ + E + A +F K + ++ + P N A++L + + + A + Sbjct: 27 GQQMGRGSEF---GDYEKAAEAFTKAIEENKEDAIPYINF--ANLLSSVNELERALAFYD 81 Query: 114 K 114 K Sbjct: 82 K 82 >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Length = 530 Score = 28.2 bits (61), Expect = 1.5 Identities = 15/140 (10%), Positives = 50/140 (35%), Gaps = 6/140 (4%) Query: 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLK 114 + ++ + + +D AR ++E++++Q +Y + + ++F + Sbjct: 14 DAWSILIREAQNQPIDKARKTYERLVAQFPSSGR-FWKLY-IEAEIKAKNYDKVEKLFQR 71 Query: 115 -VANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISAL 173 + L Y + ++ + S E++++ + + + + + Sbjct: 72 CLMKVLHIDLWKCYLSYVRETKGKLP-SYKEKMAQAYDF--ALDKIGMEIMSYQIWVDYI 128 Query: 174 KFGKVQKAKTIFEELAKDNN 193 F K +A + E + Sbjct: 129 NFLKGVEAVGSYAENQRITA 148 >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus HB27} Length = 217 Score = 27.5 bits (59), Expect = 2.2 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Query: 64 FNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAE 110 + +LD+A + + K L Q K + AS L+ KG + AA Sbjct: 162 LSMGRLDEALAQYAKALEQAPKDLDLRVRY--ASALLLKGKAEEAAR 206 Score = 26.8 bits (57), Expect = 4.5 Identities = 7/39 (17%), Positives = 17/39 (43%) Query: 55 ENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNM 93 ++L+ + D A + FE+ L ++ + L + Sbjct: 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWL 45 >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 Score = 27.4 bits (59), Expect = 2.3 Identities = 10/47 (21%), Positives = 13/47 (27%) Query: 47 EKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNM 93 EK + A+E A +S E L D K Sbjct: 2 EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVR 48 >3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 1h6o_A Length = 211 Score = 27.1 bits (60), Expect = 3.5 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 8/66 (12%) Query: 149 ILQKLSEPSNPMHQFANEILGISA----LKFGKVQKAKTIFEELAKDNNSPFGISTRSQM 204 I + + + +H+ ++ I A ++ G ++A+ +FE + D NS + Sbjct: 100 IWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSH----MPFKS 155 Query: 205 ILANII 210 L II Sbjct: 156 KLLMII 161 >3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A Length = 325 Score = 26.9 bits (59), Expect = 3.6 Identities = 8/32 (25%), Positives = 14/32 (43%) Query: 49 KKNIVGENFAQALELFNSNKLDDARSSFEKIL 80 ++V E + + F NK D A F + + Sbjct: 110 GLDVVNEKMNEGYKNFKLNKPDIAIECFREAI 141 >2pk0_A Serine/threonine protein phosphatase STP1; signaling motif, signaling protein; 2.65A {Streptococcus agalactiae A909} Length = 250 Score = 26.9 bits (58), Expect = 4.0 Identities = 10/36 (27%), Positives = 18/36 (50%) Query: 83 DNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVAND 118 + L N LSN IA++L + + + + +AN Sbjct: 196 SDGLTNMLSNADIATVLTQEKTLDDKNQDLITLANH 231 >3dd7_A DOC, death on curing protein; all alpha, ribosome inhibitor; HET: MSE; 1.70A {Enterobacteria phage P1} PDB: 3dd9_A Length = 135 Score = 26.8 bits (59), Expect = 4.1 Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 3/53 (5%) Query: 108 AAEIFLKVANDDLAPLAVRYAATLQAASILVDTSSYEEISKILQKLSEPSNPM 160 +A +FL+ + T+ AA+ S ++ L++L ++P+ Sbjct: 79 SALLFLRRNGVQVFDSPELADLTVGAAT---GEISVSSVADTLRRLYGSADPL 128 >2r5s_A Uncharacterized protein VP0806; APC090868.1, structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus rimd 2210633} Length = 176 Score = 26.6 bits (57), Expect = 4.4 Identities = 4/38 (10%), Positives = 10/38 (26%) Query: 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMY 94 Q EL + A + + + + + Sbjct: 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKA 47 >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 Score = 26.5 bits (58), Expect = 4.7 Identities = 5/37 (13%), Positives = 15/37 (40%) Query: 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNM 93 + L + L +A +FE + ++ + ++ Sbjct: 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL 57 >2r6g_F Maltose transport system permease protein MALF; ABC transporter, catalytic intermediate, E. coli maltose transporter, MBP; HET: MAL ATP; 2.80A {Escherichia coli K12} SCOP: e.70.1.1 f.58.1.1 PDB: 3fh6_F Length = 514 Score = 26.3 bits (57), Expect = 5.0 Identities = 17/145 (11%), Positives = 47/145 (32%), Gaps = 24/145 (16%) Query: 21 YKWIAPLLILMIL--------SLAIWFYLFDGSHEKKKNIVGENFAQALELFNSNKLDDA 72 ++++ P + M L ++AI F + ++ F +A E+ Sbjct: 65 WRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTN-------QLTFERAQEVLLDRSWQAG 117 Query: 73 RSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKVANDDLAP--------LA 124 ++ + ++ LS+ ++ K E L++ P + Sbjct: 118 KTYNFGLYPAGDEWQLALSDGETGKNYLS-DAFKFGGEQKLQLKETTAQPEGERANLRVI 176 Query: 125 VRYAATLQAASILVDTSSYEEISKI 149 + L + ++ + +S + Sbjct: 177 TQNRQALSDITAILPDGNKVMMSSL 201 >2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373 Score = 26.2 bits (57), Expect = 5.7 Identities = 7/47 (14%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 136 ILVDTSSYEEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAK 182 VD ++E+ ++ + + ++ + + ++++G FG+V + Sbjct: 21 TFVDPHTFEDPTQTVHEFAKELDATNISIDKVVGAGE--FGEVCSGR 65 >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370 Score = 25.9 bits (56), Expect = 7.6 Identities = 5/58 (8%), Positives = 16/58 (27%), Gaps = 2/58 (3%) Query: 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLK 114 + +A + D A + +K + + + + K+ + Sbjct: 311 YRRAQGWQGLKEYDQALADLKKAQEIAPE--DKAIQAELLKVKQKIKAQKDKEKAAYA 366 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 25.7 bits (55), Expect = 7.8 Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 13/44 (29%) Query: 144 EEISKILQKLSEPSNPMHQFANEILGISALKFGKVQKAKTIFEE 187 EE K LQ+L S M Q E KAK EE Sbjct: 92 EEQRKRLQELDAASKVMEQEWRE-------------KAKKDLEE 122 >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 Length = 125 Score = 25.5 bits (55), Expect = 9.1 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 2/59 (3%) Query: 57 FAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVAKGDTKNAAEIFLKV 115 + + D+A ++K L D N+ + +GD A E + K Sbjct: 13 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL--GNAYYKQGDYDEAIEYYQKA 69 >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 Score = 25.6 bits (56), Expect = 9.8 Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 1/76 (1%) Query: 42 FDGSHEKKKNIVGENFAQALELFNSNKLDDARSSFEKILSQDNKLYNPLSNMYIASILVA 101 F+ + + + L+N + ++A + +++ YN A L Sbjct: 29 FEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 Query: 102 -KGDTKNAAEIFLKVA 116 +G A + Sbjct: 89 IEGKEVEAEIAEARAK 104 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.316 0.131 0.364 Gapped Lambda K H 0.267 0.0563 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,665,543 Number of extensions: 71157 Number of successful extensions: 334 Number of sequences better than 10.0: 1 Number of HSP's gapped: 320 Number of HSP's successfully gapped: 70 Length of query: 218 Length of database: 5,693,230 Length adjustment: 89 Effective length of query: 129 Effective length of database: 3,535,514 Effective search space: 456081306 Effective search space used: 456081306 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.3 bits)