HHsearch results for GI: 254780423 and protein with PDBid: 3iml_A

>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP- binding, cobalt, cytoplasm, magnesium, metal-binding, nucleotide-binding; 2.35A {Burkholderia pseudomallei}
Probab=100.00  E-value=0  Score=1351.72  Aligned_cols=386  Identities=50%  Similarity=0.814  Sum_probs=372.4

Q ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf             99873067300887883168988688999999863601235666760599993149849998785246555543344542
Q gi|254780423|r    1 MSADFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGEVRLPHGLSKKDSITGQ   80 (413)
Q Consensus         1 M~~~~lFTSESVs~GHPDKicDqISDaILD~~L~~Dp~sk~~~~~~RVA~Et~v~~~~V~v~GEI~~~~~i~~~~~~tt~   80 (413)
                      |+++||||||||||||||||||||||||||+||+|||+|       ||||||++++|+|+|+|||++.+.          
T Consensus         5 M~~~ylFTSESVseGHPDKiCDqISDaILDa~L~~Dp~s-------RVA~Et~v~~~~V~v~GEitt~a~----------   67 (399)
T 3iml_A            5 MANDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYS-------RVAAETLCNTGLVVLAGEITTTAN----------   67 (399)
T ss_dssp             CCCEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTC-------EEEEEEEECSSEEEEEEEEECSCC----------
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-------CEEEEEEEECCEEEEEEEECCCCC----------
T ss_conf             667866882567899974899988889999999759998-------779999874798999999746876----------


Q ss_pred             EECCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf             001677899999999840858701--257332210003333456777554420353000589862488874206645448
Q gi|254780423|r   81 YVVDKEKFEKVVRSVIRSIGYEQE--GFHWETVDVEVLLHSQSSDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFM  158 (413)
Q Consensus        81 ~~v~~~di~~ivR~~i~~IGY~~~--gfd~~~~~v~~~i~~QS~dIa~GVd~~~~~~~~~GAGDQGiMFGYAc~ET~~~M  158 (413)
                        +   ||++|||++|++|||+++  ||||++|.|+++|++|||||+||||...+..+++|||||||||||||||||+||
T Consensus        68 --v---D~~~ivR~~i~~IGY~~~~~gfd~~t~~v~~~i~~QSpDIa~GVd~~~~~~~e~GAGDQGiMFGYAc~ET~elM  142 (399)
T 3iml_A           68 --I---DYIQIARDTIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQGAGDQGLMFGYACDETPELM  142 (399)
T ss_dssp             --C---CHHHHHHHHHHHHTCC---------CCEEEEEEEEECC------------CTTCCBSSCEEEEEEEETTSTTSC
T ss_pred             --C---CHHHHHHHHHHHHCCCHHHCCCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
T ss_conf             --8---77999999999867780551977664169985156786210032444556312487754056557638985567


Q ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             75799999999999997520357641001178268999974976314545788765067326899999887652012332
Q gi|254780423|r  159 PAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVVEPYILKALE  238 (413)
Q Consensus       159 Plpi~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~~kP~~i~tVViStQH~~~~~~~~~~~~ii~~vI~~~l~  238 (413)
                      ||||+|||+|+|||+++||+  +.+|||||||||||||+|+|++|.||+|||+|+||++.....+++++++++||++++|
T Consensus       143 Plpi~LAH~L~~rL~~~Rk~--~~~~~L~PD~KsQVTv~Y~~~kP~ri~tVVvS~QH~~~v~~~~l~~~i~~~vi~~v~~  220 (399)
T 3iml_A          143 PLPIHLSHRLVERQANLRRD--GRLPWLRPDAKSQVTVRYVDGKPHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLP  220 (399)
T ss_dssp             CHHHHHHHHHHHHHHHHHHT--TSSTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSC
T ss_pred             CHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCEEEEEEEECCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             73799999999999999730--8887648886127999977992679999998734676569999999999998688767


Q ss_pred             CCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHH
Q ss_conf             24688542799917883785587300365556111024577666777533565744045778889999999997508232
Q gi|254780423|r  239 DIKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLAD  318 (413)
Q Consensus       239 ~~~l~~~t~~~INPtG~FviGGP~~D~GLTGRKiiVDtYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~  318 (413)
                      +.+++++|+||||||||||+|||.||||||||||||||||||+||||||||||||||||||||||||||||||||||||+
T Consensus       221 ~~~l~~~t~~~INPtG~FviGGP~~D~GLTGRKiiVDTYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~  300 (399)
T 3iml_A          221 ADLIKGDIKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAS  300 (399)
T ss_dssp             GGGCCTTCEEEESTTCCCCSCGGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred             HHCCCCCCEEEECCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf             64588352899769888786788777888762356646677556687636788866434202326888889888752765


Q ss_pred             HHEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCH
Q ss_conf             21100130058355507999824888689899999999745999789998608998620210760207898766678954
Q gi|254780423|r  319 RCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPW  398 (413)
Q Consensus       319 ~c~vqlsYaIG~~~P~si~V~t~gt~~~~d~~i~~~i~~~fdl~p~~Ii~~l~L~~piy~~ta~yGHFGr~~~~~~~f~W  398 (413)
                      +||||||||||+++|+||+|+||||+++++++|.++|+++|||||++||++|+|++|||++||+||||||+   +.+|||
T Consensus       301 ~c~vqlsYaIG~a~Pvsi~V~tfGT~~~~~~~i~~~i~~~Fdl~p~~Ii~~l~L~~piY~~ta~yGHFGr~---~~~f~W  377 (399)
T 3iml_A          301 RALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRPIYEKTAAYGHFGRE---EPEFSW  377 (399)
T ss_dssp             EEEEEEEECBTCSSCSEEEEECTTCCSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSSCCGGGGSSCSSSCC---CTTCGG
T ss_pred             CEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCCCCCC---CCCCCC
T ss_conf             20688764047787538999836888789999999999837998899998608999854410474788999---999885


Q ss_pred             HHHHHHHHHHHHCCC
Q ss_conf             545789999986086
Q gi|254780423|r  399 EALDLIEPLKKAIGF  413 (413)
Q Consensus       399 E~~d~v~~lk~~~g~  413 (413)
                      ||+|++++||+++|+
T Consensus       378 E~~dk~~~l~~~~~~  392 (399)
T 3iml_A          378 EAADKALALAEAAGV  392 (399)
T ss_dssp             GCCTTHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHCCC
T ss_conf             553279999987499