HHsearch results for GI: 254780423 and protein with PDBid: 3iml_A
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP- binding, cobalt, cytoplasm, magnesium, metal-binding, nucleotide-binding; 2.35A {Burkholderia pseudomallei}
Probab=100.00 E-value=0 Score=1351.72 Aligned_cols=386 Identities=50% Similarity=0.814 Sum_probs=372.4
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 99873067300887883168988688999999863601235666760599993149849998785246555543344542
Q gi|254780423|r 1 MSADFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGEVRLPHGLSKKDSITGQ 80 (413)
Q Consensus 1 M~~~~lFTSESVs~GHPDKicDqISDaILD~~L~~Dp~sk~~~~~~RVA~Et~v~~~~V~v~GEI~~~~~i~~~~~~tt~ 80 (413)
|+++||||||||||||||||||||||||||+||+|||+| ||||||++++|+|+|+|||++.+.
T Consensus 5 M~~~ylFTSESVseGHPDKiCDqISDaILDa~L~~Dp~s-------RVA~Et~v~~~~V~v~GEitt~a~---------- 67 (399)
T 3iml_A 5 MANDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYS-------RVAAETLCNTGLVVLAGEITTTAN---------- 67 (399)
T ss_dssp CCCEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTC-------EEEEEEEECSSEEEEEEEEECSCC----------
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-------CEEEEEEEECCEEEEEEEECCCCC----------
T ss_conf 667866882567899974899988889999999759998-------779999874798999999746876----------
Q ss_pred EECCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 001677899999999840858701--257332210003333456777554420353000589862488874206645448
Q gi|254780423|r 81 YVVDKEKFEKVVRSVIRSIGYEQE--GFHWETVDVEVLLHSQSSDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFM 158 (413)
Q Consensus 81 ~~v~~~di~~ivR~~i~~IGY~~~--gfd~~~~~v~~~i~~QS~dIa~GVd~~~~~~~~~GAGDQGiMFGYAc~ET~~~M 158 (413)
+ ||++|||++|++|||+++ ||||++|.|+++|++|||||+||||...+..+++|||||||||||||||||+||
T Consensus 68 --v---D~~~ivR~~i~~IGY~~~~~gfd~~t~~v~~~i~~QSpDIa~GVd~~~~~~~e~GAGDQGiMFGYAc~ET~elM 142 (399)
T 3iml_A 68 --I---DYIQIARDTIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQGAGDQGLMFGYACDETPELM 142 (399)
T ss_dssp --C---CHHHHHHHHHHHHTCC---------CCEEEEEEEEECC------------CTTCCBSSCEEEEEEEETTSTTSC
T ss_pred --C---CHHHHHHHHHHHHCCCHHHCCCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
T ss_conf --8---77999999999867780551977664169985156786210032444556312487754056557638985567
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 75799999999999997520357641001178268999974976314545788765067326899999887652012332
Q gi|254780423|r 159 PAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVVEPYILKALE 238 (413)
Q Consensus 159 Plpi~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~~kP~~i~tVViStQH~~~~~~~~~~~~ii~~vI~~~l~ 238 (413)
||||+|||+|+|||+++||+ +.+|||||||||||||+|+|++|.||+|||+|+||++.....+++++++++||++++|
T Consensus 143 Plpi~LAH~L~~rL~~~Rk~--~~~~~L~PD~KsQVTv~Y~~~kP~ri~tVVvS~QH~~~v~~~~l~~~i~~~vi~~v~~ 220 (399)
T 3iml_A 143 PLPIHLSHRLVERQANLRRD--GRLPWLRPDAKSQVTVRYVDGKPHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLP 220 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHT--TSSTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCEEEEEEEECCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 73799999999999999730--8887648886127999977992679999998734676569999999999998688767
Q ss_pred CCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHH
Q ss_conf 24688542799917883785587300365556111024577666777533565744045778889999999997508232
Q gi|254780423|r 239 DIKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLAD 318 (413)
Q Consensus 239 ~~~l~~~t~~~INPtG~FviGGP~~D~GLTGRKiiVDtYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~ 318 (413)
+.+++++|+||||||||||+|||.||||||||||||||||||+||||||||||||||||||||||||||||||||||||+
T Consensus 221 ~~~l~~~t~~~INPtG~FviGGP~~D~GLTGRKiiVDTYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~ 300 (399)
T 3iml_A 221 ADLIKGDIKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAS 300 (399)
T ss_dssp GGGCCTTCEEEESTTCCCCSCGGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHCCCCCCEEEECCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 64588352899769888786788777888762356646677556687636788866434202326888889888752765
Q ss_pred HHEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 21100130058355507999824888689899999999745999789998608998620210760207898766678954
Q gi|254780423|r 319 RCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPW 398 (413)
Q Consensus 319 ~c~vqlsYaIG~~~P~si~V~t~gt~~~~d~~i~~~i~~~fdl~p~~Ii~~l~L~~piy~~ta~yGHFGr~~~~~~~f~W 398 (413)
+||||||||||+++|+||+|+||||+++++++|.++|+++|||||++||++|+|++|||++||+||||||+ +.+|||
T Consensus 301 ~c~vqlsYaIG~a~Pvsi~V~tfGT~~~~~~~i~~~i~~~Fdl~p~~Ii~~l~L~~piY~~ta~yGHFGr~---~~~f~W 377 (399)
T 3iml_A 301 RALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRPIYEKTAAYGHFGRE---EPEFSW 377 (399)
T ss_dssp EEEEEEEECBTCSSCSEEEEECTTCCSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSSCCGGGGSSCSSSCC---CTTCGG
T ss_pred CEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCCCCCC---CCCCCC
T ss_conf 20688764047787538999836888789999999999837998899998608999854410474788999---999885
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 545789999986086
Q gi|254780423|r 399 EALDLIEPLKKAIGF 413 (413)
Q Consensus 399 E~~d~v~~lk~~~g~ 413 (413)
||+|++++||+++|+
T Consensus 378 E~~dk~~~l~~~~~~ 392 (399)
T 3iml_A 378 EAADKALALAEAAGV 392 (399)
T ss_dssp GCCTTHHHHHHHHTC
T ss_pred CCCHHHHHHHHHCCC
T ss_conf 553279999987499