Query gi|254780423|ref|YP_003064836.1| S-adenosylmethionine synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 413
No_of_seqs 150 out of 1826
Neff 4.7
Searched_HMMs 23785
Date Mon May 30 10:27:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780423.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iml_A S-adenosylmethionine sy 100.0 0 0 1351.7 35.6 386 1-413 5-392 (399)
2 1p7l_A S-adenosylmethionine sy 100.0 0 0 1317.2 35.1 380 3-413 1-382 (383)
3 2p02_A S-adenosylmethionine sy 100.0 0 0 1305.5 32.5 375 1-405 15-395 (396)
4 2vt3_A REX, redox-sensing tran 60.8 4 0.00017 20.0 2.2 10 141-152 61-70 (215)
5 2w42_A PIWI, putative uncharac 52.5 10 0.00044 17.4 3.3 20 160-179 222-241 (427)
6 3ho1_A Argonaute; argonaute, p 52.3 8 0.00034 18.1 2.7 31 324-357 607-637 (685)
7 1kjn_A MTH0777; hypotethical p 38.6 8 0.00034 18.1 0.9 26 145-170 9-34 (157)
8 3io0_A ETUB protein; tamdem re 38.0 18 0.00076 15.8 2.7 14 144-162 143-156 (230)
9 3kxy_T EXSE; type-three secret 31.1 21 0.0009 15.4 2.1 35 287-325 17-51 (66)
10 2f0c_A Phage TP901-1 ORF49 (BP 30.7 25 0.001 15.0 2.4 23 246-268 160-182 (191)
11 1to0_A Hypothetical UPF0247 pr 23.1 23 0.00097 15.2 1.1 11 158-168 130-140 (167)
12 1u04_A Argonaute, hypothetical 23.0 35 0.0015 14.0 2.4 24 329-354 617-640 (771)
13 1o6d_A Hypothetical UPF0247 pr 22.8 23 0.00097 15.2 1.0 18 157-174 123-141 (163)
14 1j03_A Putative steroid bindin 22.7 23 0.00095 15.2 1.0 20 275-296 38-57 (102)
15 3gfh_A Ethanolamine utilizatio 20.1 40 0.0017 13.6 2.3 15 87-101 95-109 (225)
No 1
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP- binding, cobalt, cytoplasm, magnesium, metal-binding, nucleotide-binding; 2.35A {Burkholderia pseudomallei}
Probab=100.00 E-value=0 Score=1351.72 Aligned_cols=386 Identities=50% Similarity=0.814 Sum_probs=372.4
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 99873067300887883168988688999999863601235666760599993149849998785246555543344542
Q gi|254780423|r 1 MSADFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGEVRLPHGLSKKDSITGQ 80 (413)
Q Consensus 1 M~~~~lFTSESVs~GHPDKicDqISDaILD~~L~~Dp~sk~~~~~~RVA~Et~v~~~~V~v~GEI~~~~~i~~~~~~tt~ 80 (413)
|+++||||||||||||||||||||||||||+||+|||+| ||||||++++|+|+|+|||++.+.
T Consensus 5 M~~~ylFTSESVseGHPDKiCDqISDaILDa~L~~Dp~s-------RVA~Et~v~~~~V~v~GEitt~a~---------- 67 (399)
T 3iml_A 5 MANDYLFTSESVSEGHPDKVADQISDAILDAILAQDKYS-------RVAAETLCNTGLVVLAGEITTTAN---------- 67 (399)
T ss_dssp CCCEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTC-------EEEEEEEECSSEEEEEEEEECSCC----------
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-------CEEEEEEEECCEEEEEEEECCCCC----------
T ss_conf 667866882567899974899988889999999759998-------779999874798999999746876----------
Q ss_pred EECCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 001677899999999840858701--257332210003333456777554420353000589862488874206645448
Q gi|254780423|r 81 YVVDKEKFEKVVRSVIRSIGYEQE--GFHWETVDVEVLLHSQSSDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFM 158 (413)
Q Consensus 81 ~~v~~~di~~ivR~~i~~IGY~~~--gfd~~~~~v~~~i~~QS~dIa~GVd~~~~~~~~~GAGDQGiMFGYAc~ET~~~M 158 (413)
+ ||++|||++|++|||+++ ||||++|.|+++|++|||||+||||...+..+++|||||||||||||||||+||
T Consensus 68 --v---D~~~ivR~~i~~IGY~~~~~gfd~~t~~v~~~i~~QSpDIa~GVd~~~~~~~e~GAGDQGiMFGYAc~ET~elM 142 (399)
T 3iml_A 68 --I---DYIQIARDTIKRIGYDNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQGAGDQGLMFGYACDETPELM 142 (399)
T ss_dssp --C---CHHHHHHHHHHHHTCC---------CCEEEEEEEEECC------------CTTCCBSSCEEEEEEEETTSTTSC
T ss_pred --C---CHHHHHHHHHHHHCCCHHHCCCCCCCEEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
T ss_conf --8---77999999999867780551977664169985156786210032444556312487754056557638985567
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 75799999999999997520357641001178268999974976314545788765067326899999887652012332
Q gi|254780423|r 159 PAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVVEPYILKALE 238 (413)
Q Consensus 159 Plpi~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~~kP~~i~tVViStQH~~~~~~~~~~~~ii~~vI~~~l~ 238 (413)
||||+|||+|+|||+++||+ +.+|||||||||||||+|+|++|.||+|||+|+||++.....+++++++++||++++|
T Consensus 143 Plpi~LAH~L~~rL~~~Rk~--~~~~~L~PD~KsQVTv~Y~~~kP~ri~tVVvS~QH~~~v~~~~l~~~i~~~vi~~v~~ 220 (399)
T 3iml_A 143 PLPIHLSHRLVERQANLRRD--GRLPWLRPDAKSQVTVRYVDGKPHSIDTVVLSTQHAPEIDLPALREAVIEEVIKPTLP 220 (399)
T ss_dssp CHHHHHHHHHHHHHHHHHHT--TSSTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCEEEEEEEECCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 73799999999999999730--8887648886127999977992679999998734676569999999999998688767
Q ss_pred CCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHH
Q ss_conf 24688542799917883785587300365556111024577666777533565744045778889999999997508232
Q gi|254780423|r 239 DIKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLAD 318 (413)
Q Consensus 239 ~~~l~~~t~~~INPtG~FviGGP~~D~GLTGRKiiVDtYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~ 318 (413)
+.+++++|+||||||||||+|||.||||||||||||||||||+||||||||||||||||||||||||||||||||||||+
T Consensus 221 ~~~l~~~t~~~INPtG~FviGGP~~D~GLTGRKiiVDTYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~ 300 (399)
T 3iml_A 221 ADLIKGDIKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTYGGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLAS 300 (399)
T ss_dssp GGGCCTTCEEEESTTCCCCSCGGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred HHCCCCCCEEEECCCCCEEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 64588352899769888786788777888762356646677556687636788866434202326888889888752765
Q ss_pred HHEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCH
Q ss_conf 21100130058355507999824888689899999999745999789998608998620210760207898766678954
Q gi|254780423|r 319 RCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPW 398 (413)
Q Consensus 319 ~c~vqlsYaIG~~~P~si~V~t~gt~~~~d~~i~~~i~~~fdl~p~~Ii~~l~L~~piy~~ta~yGHFGr~~~~~~~f~W 398 (413)
+||||||||||+++|+||+|+||||+++++++|.++|+++|||||++||++|+|++|||++||+||||||+ +.+|||
T Consensus 301 ~c~vqlsYaIG~a~Pvsi~V~tfGT~~~~~~~i~~~i~~~Fdl~p~~Ii~~l~L~~piY~~ta~yGHFGr~---~~~f~W 377 (399)
T 3iml_A 301 RALIQVSYAIGVAEPTSVMVNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRPIYEKTAAYGHFGRE---EPEFSW 377 (399)
T ss_dssp EEEEEEEECBTCSSCSEEEEECTTCCSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSSCCGGGGSSCSSSCC---CTTCGG
T ss_pred CEEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCCCCCC---CCCCCC
T ss_conf 20688764047787538999836888789999999999837998899998608999854410474788999---999885
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 545789999986086
Q gi|254780423|r 399 EALDLIEPLKKAIGF 413 (413)
Q Consensus 399 E~~d~v~~lk~~~g~ 413 (413)
||+|++++||+++|+
T Consensus 378 E~~dk~~~l~~~~~~ 392 (399)
T 3iml_A 378 EAADKALALAEAAGV 392 (399)
T ss_dssp GCCTTHHHHHHHHTC
T ss_pred CCCHHHHHHHHHCCC
T ss_conf 553279999987499
No 2
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A
Probab=100.00 E-value=0 Score=1317.17 Aligned_cols=380 Identities=51% Similarity=0.817 Sum_probs=364.0
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCEE
Q ss_conf 87306730088788316898868899999986360123566676059999314984999878524655554334454200
Q gi|254780423|r 3 ADFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGEVRLPHGLSKKDSITGQYV 82 (413)
Q Consensus 3 ~~~lFTSESVs~GHPDKicDqISDaILD~~L~~Dp~sk~~~~~~RVA~Et~v~~~~V~v~GEI~~~~~i~~~~~~tt~~~ 82 (413)
++||||||||||||||||||||||||||+||+|||+| ||||||++++|+|+|+|||++++.+
T Consensus 1 ~~~lFTSESVseGHPDKicDqISDaILD~~L~~Dp~s-------RVA~Et~v~~~~V~v~GEitt~a~v----------- 62 (383)
T 1p7l_A 1 AKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKA-------RVACETYVKTGMVLVGGEITTSAWV----------- 62 (383)
T ss_dssp CCEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTC-------EEEEEEEEETTEEEEEEEEECSCCC-----------
T ss_pred CCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-------CEEEEEEEECCEEEEEEEECCCCCC-----------
T ss_conf 9977734677899973899988889999999659998-------6899988757989999998578668-----------
Q ss_pred CCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCH
Q ss_conf 1677899999999840858701--25733221000333345677755442035300058986248887420664544875
Q gi|254780423|r 83 VDKEKFEKVVRSVIRSIGYEQE--GFHWETVDVEVLLHSQSSDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFMPA 160 (413)
Q Consensus 83 v~~~di~~ivR~~i~~IGY~~~--gfd~~~~~v~~~i~~QS~dIa~GVd~~~~~~~~~GAGDQGiMFGYAc~ET~~~MPl 160 (413)
||++|||++|++|||+++ ||||++|+|+++|++|||||+||||.+. .+++|||||||||||||||||+||||
T Consensus 63 ----D~~~ivR~~i~~IGY~~~~~gfd~~~~~I~~~i~~QSpdIa~GVd~~~--~~~~GAGDQGiMFGYA~~ET~e~MPl 136 (383)
T 1p7l_A 63 ----DIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDINQGVDRAD--PLEQGAGDQGLMFGYATNETDVLMPA 136 (383)
T ss_dssp ----CHHHHHHHHHHHHTCEEGGGTEETTTSEEEEEEECCCHHHHHHHSCSS--TTTCCCSSCEEEEEEEETTSTTSCCH
T ss_pred ----CHHHHHHHHHHHHHCCCHHCCCCCCEEEEEEEECCCCHHHHCCCCCCC--CCCCCCCCCEEEEEEECCCCCCCCCH
T ss_conf ----789999999999712711038777615899931045867763233244--44546676237876762797556781
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf 79999999999999752035764100117826899997497631454578876506732689999988765201233224
Q gi|254780423|r 161 PIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVVEPYILKALEDI 240 (413)
Q Consensus 161 pi~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~~kP~~i~tVViStQH~~~~~~~~~~~~ii~~vI~~~l~~~ 240 (413)
||+|||+|+++|+++||+ +.+|||||||||||||+|+|++|++|++||+|+||++.....+.+++++++||++++|..
T Consensus 137 pi~lAh~L~~~L~~~Rk~--g~l~~L~PD~KsQVTv~Y~~~~p~~i~tvviS~QH~~~~~~~~~~~~i~~~vi~~v~~~~ 214 (383)
T 1p7l_A 137 PITYAHRLVQRQAEVRKN--GTLPWLRPDAKSQVTFQYDDGKIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAE 214 (383)
T ss_dssp HHHHHHHHHHHHHHHHHT--TSSTTEEEEEEEEEEEEEETTEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTTTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHC--CCCCCCCCCCCEEEEEECCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 699999999999999963--999775898604899972598158998898831577645999999999999878755733
Q ss_pred CCCCCCEEEEECCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 68854279991788378558730036555611102457766677753356574404577888999999999750823221
Q gi|254780423|r 241 KISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLADRC 320 (413)
Q Consensus 241 ~l~~~t~~~INPtG~FviGGP~~D~GLTGRKiiVDtYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~~c 320 (413)
+++++|+||||||||||+|||.|||||||||||||||||++|||||||||||||||||||||||||+||||||||||++|
T Consensus 215 ~~~~~t~~~INPtG~FviGGP~gD~GLTGRKiiVDTYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~~c 294 (383)
T 1p7l_A 215 WLTSATKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRC 294 (383)
T ss_dssp GCCTTCEEEESTTSCCCSCHHHHSCEETTCCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSBSEE
T ss_pred CCCCCCEEEECCCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCE
T ss_conf 36845479976889865489854568777510242566755668864678885533320244677878999863787725
Q ss_pred EEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 10013005835550799982488868989999999974599978999860899862021076020789876667895454
Q gi|254780423|r 321 TIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEA 400 (413)
Q Consensus 321 ~vqlsYaIG~~~P~si~V~t~gt~~~~d~~i~~~i~~~fdl~p~~Ii~~l~L~~piy~~ta~yGHFGr~~~~~~~f~WE~ 400 (413)
|||||||||+++|+||+|+||||+++++++|.++|+++|||||++||++|+|++|||++||+||||||+ +|||||
T Consensus 295 evqlsYaIG~a~P~si~V~tfgT~~~~~~~i~~~i~~~fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~-----~f~WE~ 369 (383)
T 1p7l_A 295 EIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGHFGRE-----HFPWEK 369 (383)
T ss_dssp EEEEEECTTCCSCSEEEEECTTCBSSCHHHHHHHHHHHCCCSHHHHHHHHTCCSSCCGGGGSSCSSSCT-----TSTTTC
T ss_pred EEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHCCCCCCCCC-----CCCCCC
T ss_conf 898863047778658998846888889999999999817998899998608999865310475688999-----988155
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 5789999986086
Q gi|254780423|r 401 LDLIEPLKKAIGF 413 (413)
Q Consensus 401 ~d~v~~lk~~~g~ 413 (413)
||+++.||+++||
T Consensus 370 ~d~~~~l~~~~~~ 382 (383)
T 1p7l_A 370 TDKAQLLRDAAGL 382 (383)
T ss_dssp CSHHHHHHHTSCC
T ss_pred CHHHHHHHHHCCC
T ss_conf 3109999987089
No 3
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A*
Probab=100.00 E-value=0 Score=1305.52 Aligned_cols=375 Identities=46% Similarity=0.776 Sum_probs=356.5
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf 99873067300887883168988688999999863601235666760599993149849998785246555543344542
Q gi|254780423|r 1 MSADFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGEVRLPHGLSKKDSITGQ 80 (413)
Q Consensus 1 M~~~~lFTSESVs~GHPDKicDqISDaILD~~L~~Dp~sk~~~~~~RVA~Et~v~~~~V~v~GEI~~~~~i~~~~~~tt~ 80 (413)
|+.+||||||||||||||||||||||||||+||+|||+| ||||||++++|+|+|+|||++.+.
T Consensus 15 ~~~~ylFTSESVseGHPDKicDqISDaILD~~L~~Dp~s-------rVA~Et~v~~~~V~v~GEitt~a~---------- 77 (396)
T 2p02_A 15 EEGTFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDA-------KVACETVAKTGMILLAGEITSRAA---------- 77 (396)
T ss_dssp --CEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTC-------EEEEEEEEETTEEEEEEEEECSCC----------
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-------CEEEEEEEECCEEEEEEEECCCCC----------
T ss_conf 378258995676899970898877879999999659998-------589998875798999999867866----------
Q ss_pred EECCHHHHHHHHHHHHHCCCCCC--CCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 00167789999999984085870--1257332210003333456777554420353000589862488874206645448
Q gi|254780423|r 81 YVVDKEKFEKVVRSVIRSIGYEQ--EGFHWETVDVEVLLHSQSSDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFM 158 (413)
Q Consensus 81 ~~v~~~di~~ivR~~i~~IGY~~--~gfd~~~~~v~~~i~~QS~dIa~GVd~~~~~~~~~GAGDQGiMFGYAc~ET~~~M 158 (413)
+ ||++|||++|++|||++ .||||++|.|+++|++|||||+|||+.+. ..+++|||||||||||||||||+||
T Consensus 78 --v---d~~~ivR~~i~~IGY~~~~~gfd~~t~~I~~~i~~QSpdIa~GVd~~~-~~~~~GAGDQGiMFGYAc~ET~~lM 151 (396)
T 2p02_A 78 --V---DYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVHLDR-NEEDIGAGDQGLMFGYATDETEECM 151 (396)
T ss_dssp --C---CHHHHHHHHHHHHTCEEGGGTEETTTSEEEEEEECCCHHHHHHHTTTC-CGGGCCBSSCEEEEEEEETTSTTSS
T ss_pred --C---CHHHHHHHHHHHHCCCCHHCCCCCEEEEEEECCCCCCHHHHHHHHCCC-CHHHCCCCCCEEEEEECCCCCCCCC
T ss_conf --8---799999999998451505418551214788601113847665430477-6766077764268631047886556
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC----CEEEEEEEEEEEECCCCCCHHHHHHHHHHHCC
Q ss_conf 75799999999999997520357641001178268999974976----31454578876506732689999988765201
Q gi|254780423|r 159 PAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDNK----VCEVKSIVLSIQHFDPTWDRGKVRSVVEPYIL 234 (413)
Q Consensus 159 Plpi~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~~k----P~~i~tVViStQH~~~~~~~~~~~~ii~~vI~ 234 (413)
||||+|||+|+|||+++||+ +.+|||||||||||||+|++++ |+||+|||+|+||++.....+.+++++++||+
T Consensus 152 Plpi~LAhrL~krL~~~Rk~--g~l~~LrPDgKsQVTveY~~~~~~~~P~rI~tVViS~QH~~~v~~~~lr~~i~~~vi~ 229 (396)
T 2p02_A 152 PLTIVLAHKLNAKLAELRRN--GTLPWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIK 229 (396)
T ss_dssp CHHHHHHHHHHHHHHHHHHT--TSSTTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECSSCCHHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 73899999999999999963--9987658887325899985598753306886788850468867999999999999998
Q ss_pred CCCCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 23322468854279991788378558730036555611102457766677753356574404577888999999999750
Q gi|254780423|r 235 KALEDIKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAA 314 (413)
Q Consensus 235 ~~l~~~~l~~~t~~~INPtG~FviGGP~~D~GLTGRKiiVDtYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaa 314 (413)
+++|+.+++++|+||||||||||+|||.|||||||||||||||||++|||||||||||||||||||||||||+|||||||
T Consensus 230 ~v~~~~~ld~~t~~~INPtG~FviGGP~~D~GLTGRKiiVDTYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaa 309 (396)
T 2p02_A 230 AVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKG 309 (396)
T ss_dssp HHSCGGGCCTTCEEEESTTSCCCSCGGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCHHCCCCCCEEEECCCCCEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 75303127967469966999845179742456666510000257744668866788984434544011577889999862
Q ss_pred CHHHHHEEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCC
Q ss_conf 82322110013005835550799982488868989999999974599978999860899862021076020789876667
Q gi|254780423|r 315 GLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDG 394 (413)
Q Consensus 315 gla~~c~vqlsYaIG~~~P~si~V~t~gt~~~~d~~i~~~i~~~fdl~p~~Ii~~l~L~~piy~~ta~yGHFGr~~~~~~ 394 (413)
|||++||||||||||+++|+||+|+||||+++++++|.++|+++|||||++||++|+|++|||++||+||||||+
T Consensus 310 gla~~c~vqlsYaIG~~~Pvsi~v~t~gT~~~~~~~i~~~i~~~Fdl~p~~Ii~~L~L~~piy~~ta~yGHFGr~----- 384 (396)
T 2p02_A 310 GLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRD----- 384 (396)
T ss_dssp TSCSEEEEEEEECBTCCSCSEEEEECTTCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSSCGGGGSSSCSSSST-----
T ss_pred CCCCEEEEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCHHHCCCCCCCCC-----
T ss_conf 798747999973326677618999807888689999999999737998899998707899866555375788999-----
Q ss_pred CCCHHHHHHHH
Q ss_conf 89545457899
Q gi|254780423|r 395 FFPWEALDLIE 405 (413)
Q Consensus 395 ~f~WE~~d~v~ 405 (413)
+||||++|+++
T Consensus 385 ~~~WE~~d~~~ 395 (396)
T 2p02_A 385 SFPWEVPKKLK 395 (396)
T ss_dssp TCGGGSCCCCC
T ss_pred CCCCCCCCCCC
T ss_conf 99854636778
No 4
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, transcription regulation, redox poise, DNA-binding, NAD, NADH; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=60.77 E-value=4 Score=20.05 Aligned_cols=10 Identities=40% Similarity=0.943 Sum_probs=4.3
Q ss_pred CCCEEEEEEEEC
Q ss_conf 862488874206
Q gi|254780423|r 141 GDQGIMFGYACR 152 (413)
Q Consensus 141 GDQGiMFGYAc~ 152 (413)
|-||. ||-++
T Consensus 61 G~~g~--GY~V~ 70 (215)
T 2vt3_A 61 GKKGY--GYNVD 70 (215)
T ss_dssp C-------EEHH
T ss_pred CCCCC--CEEHH
T ss_conf 99888--71689
No 5
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=52.51 E-value=10 Score=17.37 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 57999999999999975203
Q gi|254780423|r 160 APIYYAHRILRTLADARKNS 179 (413)
Q Consensus 160 lpi~lAh~L~krL~~~Rk~~ 179 (413)
..-.|...|.+.|...++.+
T Consensus 222 ~~~~l~~~l~~~l~~~~~~~ 241 (427)
T 2w42_A 222 YLTYLKSTIKKVVYGFKKSN 241 (427)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 79999999999999999983
No 6
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, plasmid; 2.60A {Thermus thermophilus HB27} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=52.33 E-value=8 Score=18.10 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=19.6
Q ss_pred EEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 1300583555079998248886898999999997
Q gi|254780423|r 324 LSYAIGISRPLSIFVDLHDSGKVSESCVANAINK 357 (413)
Q Consensus 324 lsYaIG~~~P~si~V~t~gt~~~~d~~i~~~i~~ 357 (413)
...-.|-+.|+.+-.++ +..+.+.|.+.+-+
T Consensus 607 ~~~~~gtp~p~~v~~~~---~~~~~~~l~~~~y~ 637 (685)
T 3ho1_A 607 HRDFRGTPRPLKLVHEA---GDTPLEALAHQIFH 637 (685)
T ss_dssp CCCSSSCCCCEEEEEEE---ECSCHHHHHHHHHH
T ss_pred CCCCEECCCEEEEEECC---CCCCHHHHHHHHHH
T ss_conf 55876637108999978---99899999999999
No 7
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=38.63 E-value=8 Score=18.10 Aligned_cols=26 Identities=23% Similarity=0.560 Sum_probs=20.3
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 88874206645448757999999999
Q gi|254780423|r 145 IMFGYACRETADFMPAPIYYAHRILR 170 (413)
Q Consensus 145 iMFGYAc~ET~~~MPlpi~lAh~L~k 170 (413)
.|.=--|-|.|.+.|+.++|+|+|-+
T Consensus 9 ~lillGCPE~Pvq~p~~lYl~~~Lk~ 34 (157)
T 1kjn_A 9 ALMVLGCPESPVQIPLAIYTSHKLKK 34 (157)
T ss_dssp EEEECCCSCSTTHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 89994599985133799999999976
No 8
>3io0_A ETUB protein; tamdem repeat of bacterial microcompartment domain in A single polypeptide chain, structural protein; 3.00A {Clostridium kluyveri dsm 555}
Probab=38.02 E-value=18 Score=15.84 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=6.4
Q ss_pred EEEEEEEECCCCCCCCHHH
Q ss_conf 4888742066454487579
Q gi|254780423|r 144 GIMFGYACRETADFMPAPI 162 (413)
Q Consensus 144 GiMFGYAc~ET~~~MPlpi 162 (413)
|--|||=|- -|+.+
T Consensus 143 GkAlG~ie~-----~pa~~ 156 (230)
T 3io0_A 143 GQAFGIMHA-----APAGV 156 (230)
T ss_dssp TSEEEEEEE-----ESHHH
T ss_pred CCEEEEEEC-----CCHHH
T ss_conf 752699974-----85899
No 9
>3kxy_T EXSE; type-three secretion system, TTSS, T3SS, chaperone-effector chaperone, effector, chaperone-transcription inhibitor COMP; 2.80A {Pseudomonas aeruginosa}
Probab=31.05 E-value=21 Score=15.39 Aligned_cols=35 Identities=29% Similarity=0.432 Sum_probs=20.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEE
Q ss_conf 335657440457788899999999975082322110013
Q gi|254780423|r 287 AFSGKDITKVDRAAAYAARYLAKNIVAAGLADRCTIQLS 325 (413)
Q Consensus 287 AfSGKDptKVDRSaAY~AR~iAKniVaagla~~c~vqls 325 (413)
|.-|.|-| |-|-.|||+|.|+--.--.++.+-.|+
T Consensus 17 avrgedrs----svaglarwlarnvagdprseqalqrla 51 (66)
T 3kxy_T 17 AVRGEDRS----SVAGLARWLARNVAGDPRSEQALQRLA 51 (66)
T ss_dssp CCCCCCCS----CHHHHHHHHHHHTCCCTTHHHHHHHHH
T ss_pred HHHCCCHH----HHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 77065324----688999999986159950799999875
No 10
>2f0c_A Phage TP901-1 ORF49 (BPP); beta-barrel, beta prism, 3 helix parallel bundle, virus/viral protein complex; 1.65A {Lactococcus phage tp901-1} SCOP: b.21.1.3 b.108.1.4 PDB: 3ejc_A 3hg0_A
Probab=30.67 E-value=25 Score=14.98 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.0
Q ss_pred CEEEEECCCCEEECCCCCCCCCC
Q ss_conf 27999178837855873003655
Q gi|254780423|r 246 CSWYINPAGKFVIGGPCSDAGLT 268 (413)
Q Consensus 246 t~~~INPtG~FviGGP~~D~GLT 268 (413)
..+-|||.|+|..=||..++|..
T Consensus 160 fhIdI~pdGsi~WWG~~~~~g~~ 182 (191)
T 2f0c_A 160 FHIDIPSSGVCQWFGPTASSGTP 182 (191)
T ss_dssp EEEEECTTCCCEECSCCBSSCCE
T ss_pred EEEEECCCCCEEECCCCCCCCCC
T ss_conf 99986899847854898788887
No 11
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=23.05 E-value=23 Score=15.17 Aligned_cols=11 Identities=27% Similarity=0.229 Sum_probs=7.4
Q ss_pred CCHHHHHHHHH
Q ss_conf 87579999999
Q gi|254780423|r 158 MPAPIYYAHRI 168 (413)
Q Consensus 158 MPlpi~lAh~L 168 (413)
|-+|+.||+-+
T Consensus 130 mT~pH~larv~ 140 (167)
T 1to0_A 130 MTFPHQLMRLI 140 (167)
T ss_dssp SCCCHHHHHHH
T ss_pred CCCCHHHHHHH
T ss_conf 88618999999
No 12
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H, hydrolase/gene regulation complex; 2.25A {Pyrococcus furiosus dsm 3638} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=22.98 E-value=35 Score=14.01 Aligned_cols=24 Identities=8% Similarity=0.061 Sum_probs=12.6
Q ss_pred CCCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 83555079998248886898999999
Q gi|254780423|r 329 GISRPLSIFVDLHDSGKVSESCVANA 354 (413)
Q Consensus 329 G~~~P~si~V~t~gt~~~~d~~i~~~ 354 (413)
|...|-.|.| |-.|.+.+.++..+
T Consensus 617 ~~~~P~~IIi--YRDGvV~~~El~~i 640 (771)
T 1u04_A 617 IKLDNKKILL--LRDGRITNNEEEGL 640 (771)
T ss_dssp CCCTTCEEEE--ECSBCCCHHHHHHH
T ss_pred CCCCCCEEEE--ECCCCCCHHHHHHH
T ss_conf 8999986999--87888557999999
No 13
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=22.82 E-value=23 Score=15.18 Aligned_cols=18 Identities=17% Similarity=-0.044 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHH-HHHHHH
Q ss_conf 487579999999-999999
Q gi|254780423|r 157 FMPAPIYYAHRI-LRTLAD 174 (413)
Q Consensus 157 ~MPlpi~lAh~L-~krL~~ 174 (413)
-|-+|+.||+-+ +++|..
T Consensus 123 ~mT~pH~larv~L~EQiYR 141 (163)
T 1o6d_A 123 KMTFTHGMTVLIVLEQIFR 141 (163)
T ss_dssp SSCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
T ss_conf 8886189999999999999
No 14
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=22.69 E-value=23 Score=15.24 Aligned_cols=20 Identities=30% Similarity=0.615 Sum_probs=15.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 2457766677753356574404
Q gi|254780423|r 275 DTYGGASPHGGGAFSGKDITKV 296 (413)
Q Consensus 275 DtYGg~~~hGGGAfSGKDptKV 296 (413)
+.||+.+++ +.|.|||.|+.
T Consensus 38 ~~YGpgg~Y--~~fAG~Dasra 57 (102)
T 1j03_A 38 SFYGSGGDY--SMFAGKDASRA 57 (102)
T ss_dssp HHHSSSSTT--TTTTTSBCHHH
T ss_pred CCCCCCCCC--CCCCCCCHHHH
T ss_conf 115699977--54232347999
No 15
>3gfh_A Ethanolamine utilization protein EUTL; bacterial mircocompartment, shell protein, structural protein; 2.20A {Escherichia coli} PDB: 3i87_A 3i82_A
Probab=20.07 E-value=40 Score=13.63 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 899999999840858
Q gi|254780423|r 87 KFEKVVRSVIRSIGY 101 (413)
Q Consensus 87 di~~ivR~~i~~IGY 101 (413)
|++.-+...++.++.
T Consensus 95 dVrsave~a~~~~e~ 109 (225)
T 3gfh_A 95 EVRAGLDAMIAHIEN 109 (225)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999851
Done!