Query         gi|254780423|ref|YP_003064836.1| S-adenosylmethionine synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 413
No_of_seqs    150 out of 1826
Neff          4.7 
Searched_HMMs 13730
Date          Wed Jun  1 06:01:32 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780423.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1mxaa3 d.130.1.1 (A:232-383)  100.0       0       0  562.1  13.8  151  258-413     1-151 (152)
  2 d2p02a3 d.130.1.1 (A:274-417)  100.0       0       0  548.0  11.4  143  258-405     1-143 (144)
  3 d1mxaa2 d.130.1.1 (A:108-231)  100.0       0       0  372.0  14.2  122  134-257     3-124 (124)
  4 d2p02a2 d.130.1.1 (A:148-273)  100.0       0       0  369.3  12.1  121  135-257     2-126 (126)
  5 d2p02a1 d.130.1.1 (A:38-147) S 100.0       0       0  331.4   8.9  106    4-131     2-109 (110)
  6 d1mxaa1 d.130.1.1 (A:1-102) S- 100.0       0       0  311.1   7.5  100    3-124     1-102 (102)
  7 d2dt5a1 a.4.5.38 (A:4-77) Tran  69.8     2.3 0.00017   20.0   3.7   53  342-413    22-74  (74)
  8 d1w9ha1 c.55.3.10 (A:93-408) H  59.7     3.9 0.00028   18.6   3.3   18   88-105    61-78  (316)
  9 d2f0ca1 b.21.1.3 (A:63-163) Ba  41.7     7.1 0.00051   16.9   2.2   24  246-270    70-93  (101)
 10 d1u04a2 c.55.3.10 (A:324-770)   36.5      10 0.00074   15.9   2.4   25   14-39    126-150 (447)
 11 d1kjna_ c.115.1.1 (A:) Hypothe  36.2     5.3 0.00039   17.7   0.9   19  151-169    10-28  (152)
 12 d1j3ga_ d.118.1.1 (A:) AmpD pr  33.3      13 0.00097   15.2   2.6   20  245-264    73-92  (187)
 13 d1ae1a_ c.2.1.2 (A:) Tropinone  31.2     9.5 0.00069   16.1   1.5   19  265-285   239-257 (258)
 14 d1zrua1 b.21.1.3 (A:162-264) r  29.6      15  0.0011   14.9   2.3   25  246-270    70-95  (103)
 15 d1t0ga_ d.120.1.2 (A:) Putativ  28.5     8.6 0.00062   16.4   0.9   20  275-296    45-64  (109)
 16 d1ghha_ d.57.1.1 (A:) DNA dama  26.9      17  0.0013   14.5   4.5   36  157-203    12-49  (81)
 17 d1bvsa1 a.5.1.1 (A:148-203) DN  26.1     5.9 0.00043   17.4  -0.3   28   12-39     12-39  (56)
 18 d1b3ta_ d.58.8.1 (A:) Epstein   25.8      18  0.0013   14.3   3.5   10  187-196   128-137 (147)
 19 d1yvua2 c.55.3.10 (A:315-706)   24.9     8.5 0.00062   16.4   0.4   26  328-356   321-346 (392)
 20 d1to0a_ c.116.1.3 (A:) Hypothe  24.0      13 0.00094   15.3   1.2   10  158-167   130-139 (157)
 21 d1gesa2 c.3.1.5 (A:147-262) Gl  23.6      20  0.0014   14.1   4.5   51  163-213    63-115 (116)
 22 d1o6da_ c.116.1.3 (A:) Hypothe  23.5      13 0.00092   15.3   1.0   11  158-168   122-132 (147)
 23 d1xoda1 b.55.1.4 (A:10-123) Sp  21.9     9.9 0.00072   16.0   0.2   11   92-102    42-52  (114)
 24 d1vh0a_ c.116.1.3 (A:) Hypothe  21.6      15  0.0011   14.9   1.0   10  158-167   130-139 (157)
 25 d2foka2 a.4.5.12 (A:144-286) R  21.5      18  0.0013   14.3   1.5   58  260-321    42-101 (143)
 26 g1uhe.1 b.52.2.1 (B:,A:) Pyruv  20.1      23  0.0017   13.6   1.9   29  252-280    63-91  (121)

No 1  
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=562.13  Aligned_cols=151  Identities=60%  Similarity=0.995  Sum_probs=149.1

Q ss_pred             ECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCEEEE
Q ss_conf             55873003655561110245776667775335657440457788899999999975082322110013005835550799
Q gi|254780423|r  258 IGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIF  337 (413)
Q Consensus       258 iGGP~~D~GLTGRKiiVDtYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~~c~vqlsYaIG~~~P~si~  337 (413)
                      +|||.|||||||||||||||||++||||||||||||||||||||||||||||||||+|||++|+||||||||+++|+||+
T Consensus         1 iGGp~~d~GlTGRKiivDtYGg~~~~GGGafsGKD~tKVDRSaAY~AR~iAKniVaaglA~~c~VQlsYAIGva~Pvsi~   80 (152)
T d1mxaa3           1 IGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIM   80 (152)
T ss_dssp             SCTTTTSEEETTSSHHHHHTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECTTCSSCSEEE
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEE
T ss_conf             97986566775662789767775165887778886551101088999987777987089751377775404702000668


Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             9824888689899999999745999789998608998620210760207898766678954545789999986086
Q gi|254780423|r  338 VDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIGF  413 (413)
Q Consensus       338 V~t~gt~~~~d~~i~~~i~~~fdl~p~~Ii~~l~L~~piy~~ta~yGHFGr~~~~~~~f~WE~~d~v~~lk~~~g~  413 (413)
                      |+||||+++++++|.++|+++|||||++||++|+|++|||++||+||||||+     +||||++|++++||+++||
T Consensus        81 V~t~gt~~~~~~~i~~~I~~~FDl~P~~II~~L~L~~PiY~~TAayGHFGR~-----~f~WEk~d~v~~lk~a~gl  151 (152)
T d1mxaa3          81 VETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGHFGRE-----HFPWEKTDKAQLLRDAAGL  151 (152)
T ss_dssp             EEECSCCSSCHHHHHHHHHHHCCCSHHHHHHHTTCCSSCCGGGGSSCSSSCS-----SSGGGCCTTHHHHHHHSSC
T ss_pred             EEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC-----CCCCCCCHHHHHHHHHCCC
T ss_conf             8842686300588999999835987899987408999745123787788899-----9796241469999997089


No 2  
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Probab=100.00  E-value=0  Score=548.04  Aligned_cols=143  Identities=57%  Similarity=0.914  Sum_probs=140.4

Q ss_pred             ECCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHEEEEEECCCCCCCEEEE
Q ss_conf             55873003655561110245776667775335657440457788899999999975082322110013005835550799
Q gi|254780423|r  258 IGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIF  337 (413)
Q Consensus       258 iGGP~~D~GLTGRKiiVDtYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~~c~vqlsYaIG~~~P~si~  337 (413)
                      ||||.|||||||||||||||||++||||||||||||||||||||||||||||||||+|||++|+||||||||+++|+||+
T Consensus         1 iGGp~~d~GlTGRKiivDtYGg~~~hGGGafsgKD~tKvDRSaAY~AR~iAKniVaaglA~~c~VQlsYAIGva~Pvsi~   80 (144)
T d2p02a3           1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSIS   80 (144)
T ss_dssp             SCGGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCCSCSEEE
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCEEE
T ss_conf             97986566775662789747774045886777774213677778899999999987377770699998633756323689


Q ss_pred             EEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             98248886898999999997459997899986089986202107602078987666789545457899
Q gi|254780423|r  338 VDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIE  405 (413)
Q Consensus       338 V~t~gt~~~~d~~i~~~i~~~fdl~p~~Ii~~l~L~~piy~~ta~yGHFGr~~~~~~~f~WE~~d~v~  405 (413)
                      |+||||+++++++|.++|+++|||||++||++|+|++|||++||+||||||+     +||||++|+++
T Consensus        81 VdtfGT~~~~~~~i~~~I~~~FDl~P~~II~~L~L~~PiY~~TAaYGHFGR~-----~f~WEk~dkve  143 (144)
T d2p02a3          81 IFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRD-----SFPWEVPKKLK  143 (144)
T ss_dssp             EECTTCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSSCGGGGSSSCSSSST-----TCGGGSCCCCC
T ss_pred             EEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHCCCCCCCCCC-----CCCEECCCCCC
T ss_conf             9968975358999999888604878899999828899865300576678899-----99801645656


No 3  
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=372.03  Aligned_cols=122  Identities=45%  Similarity=0.706  Sum_probs=113.8

Q ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEE
Q ss_conf             30005898624888742066454487579999999999999752035764100117826899997497631454578876
Q gi|254780423|r  134 DCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSI  213 (413)
Q Consensus       134 ~~~~~GAGDQGiMFGYAc~ET~~~MPlpi~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~~kP~~i~tVViSt  213 (413)
                      +.+++||||||||||||||||++||||||+|||+|+|+|+++||+  +.++||||||||||||+|+|++|++|++||+|+
T Consensus         3 ~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lah~l~~~l~~~Rk~--~~~~~L~PD~KsQVTv~Y~~~~P~~i~tiViSt   80 (124)
T d1mxaa2           3 DPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKN--GTLPWLRPDAKSQVTFQYDDGKIVGIDAVVLST   80 (124)
T ss_dssp             SGGGCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHT--SSSTTEEEEEEEEEEEEESSSCEEEEEEEEEEE
T ss_pred             CHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEC
T ss_conf             710168886247665774896201766899999999999999981--999754688877999985079987888888614


Q ss_pred             EECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEE
Q ss_conf             50673268999998876520123322468854279991788378
Q gi|254780423|r  214 QHFDPTWDRGKVRSVVEPYILKALEDIKISPDCSWYINPAGKFV  257 (413)
Q Consensus       214 QH~~~~~~~~~~~~ii~~vI~~~l~~~~l~~~t~~~INPtG~Fv  257 (413)
                      ||++.....+.++.++++||++++|..+++++|+||||||||||
T Consensus        81 QH~~~v~~~~lr~~i~~~VI~~vlp~~~l~~~t~~~INPTGrFV  124 (124)
T d1mxaa2          81 QHSEEIDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFV  124 (124)
T ss_dssp             EECSSSCHHHHHHHHHHHTTTTTSCGGGCCTTCEEEESTTCCCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCC
T ss_conf             68876699999999999888986014328989899988999839


No 4  
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Probab=100.00  E-value=0  Score=369.31  Aligned_cols=121  Identities=36%  Similarity=0.610  Sum_probs=111.3

Q ss_pred             CCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCC----CEEEEEEE
Q ss_conf             00058986248887420664544875799999999999997520357641001178268999974976----31454578
Q gi|254780423|r  135 CSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDNK----VCEVKSIV  210 (413)
Q Consensus       135 ~~~~GAGDQGiMFGYAc~ET~~~MPlpi~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~~k----P~~i~tVV  210 (413)
                      .+++||||||||||||||||++||||||+|||+|+++|+++||+  +.+|||||||||||||+|++++    |++|++||
T Consensus         2 ~~~~GAGDQGimfGYA~~ET~~~MPlpi~lAh~L~~~l~~~Rk~--~~~~~LrPD~KsQVTv~Y~~~~~~~~P~~i~tVV   79 (126)
T d2p02a2           2 EEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRN--GTLPWLRPDSKTQVTVQYMQDRGAVLPIRVHTIV   79 (126)
T ss_dssp             GGGCCBSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHHT--TSSTTEEEEEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHC--CCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEE
T ss_conf             32137775415221674898344881899999999999999974--9997546887579999986699845678998888


Q ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEE
Q ss_conf             87650673268999998876520123322468854279991788378
Q gi|254780423|r  211 LSIQHFDPTWDRGKVRSVVEPYILKALEDIKISPDCSWYINPAGKFV  257 (413)
Q Consensus       211 iStQH~~~~~~~~~~~~ii~~vI~~~l~~~~l~~~t~~~INPtG~Fv  257 (413)
                      +|+||++.....+.++.++++||++++|+.+++++|+|+||||||||
T Consensus        80 iStQH~~~~~~~~l~~~i~~~Vi~~vl~~~~ld~~t~~~INPTGrFV  126 (126)
T d2p02a2          80 ISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFV  126 (126)
T ss_dssp             EEEEECSSCCHHHHHHHHHHTTHHHHSCGGGCCTTCEEEESTTSCCC
T ss_pred             EECCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCEEEECCCCCCC
T ss_conf             70356511126889966343353776862007989889989999869


No 5  
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]}
Probab=100.00  E-value=0  Score=331.37  Aligned_cols=106  Identities=45%  Similarity=0.810  Sum_probs=99.3

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCEEC
Q ss_conf             73067300887883168988688999999863601235666760599993149849998785246555543344542001
Q gi|254780423|r    4 DFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGEVRLPHGLSKKDSITGQYVV   83 (413)
Q Consensus         4 ~~lFTSESVs~GHPDKicDqISDaILD~~L~~Dp~sk~~~~~~RVA~Et~v~~~~V~v~GEI~~~~~i~~~~~~tt~~~v   83 (413)
                      +||||||||||||||||||||||||||+||++||+|       ||||||++++|+|+|+|||++++.+            
T Consensus         2 ~~lfTsEsVs~GHPDKicDqISDailD~~l~~Dp~a-------rVA~Et~v~~~~V~v~GEitt~~~v------------   62 (110)
T d2p02a1           2 TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDA-------KVACETVAKTGMILLAGEITSRAAV------------   62 (110)
T ss_dssp             EEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTC-------EEEEEEEEETTEEEEEEEEECSCCC------------
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-------CEEEEEEECCCEEEEEEEECCCCCC------------
T ss_conf             668985135799976799987759989998659553-------2568998538879998874243321------------


Q ss_pred             CHHHHHHHHHHHHHCCCCCC--CCCCCCCCCEEEHHHHHHHHHHHHHHHC
Q ss_conf             67789999999984085870--1257332210003333456777554420
Q gi|254780423|r   84 DKEKFEKVVRSVIRSIGYEQ--EGFHWETVDVEVLLHSQSSDIAYGVDNA  131 (413)
Q Consensus        84 ~~~di~~ivR~~i~~IGY~~--~gfd~~~~~v~~~i~~QS~dIa~GVd~~  131 (413)
                         ||++|||+++++|||++  .||||++|.|+++|++|||||+||||.+
T Consensus        63 ---d~~~IvR~vi~~IGY~~~~~gfd~~t~~V~~~I~~QSpDIa~GVd~~  109 (110)
T d2p02a1          63 ---DYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVHLD  109 (110)
T ss_dssp             ---CHHHHHHHHHHHHTCEEGGGTEETTTSEEEEEEECCCHHHHHHHTTT
T ss_pred             ---CHHHHHHHHHHCCCEECCCCCCCCCCEEEEEECCCCCHHHHHHCCCC
T ss_conf             ---08899998613057746768726260077761257996898043699


No 6  
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=311.06  Aligned_cols=100  Identities=45%  Similarity=0.709  Sum_probs=93.5

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCEE
Q ss_conf             87306730088788316898868899999986360123566676059999314984999878524655554334454200
Q gi|254780423|r    3 ADFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGEVRLPHGLSKKDSITGQYV   82 (413)
Q Consensus         3 ~~~lFTSESVs~GHPDKicDqISDaILD~~L~~Dp~sk~~~~~~RVA~Et~v~~~~V~v~GEI~~~~~i~~~~~~tt~~~   82 (413)
                      ++||||||||||||||||||||||||||+||+|||+|       ||||||++++|+|+|+|||++++.            
T Consensus         1 s~~lfTSEsVs~GHPDKicDqISDaIlD~~L~~Dp~s-------RVA~Et~~~~~~v~v~GEits~~~------------   61 (102)
T d1mxaa1           1 AKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKA-------RVACETYVKTGMVLVGGEITTSAW------------   61 (102)
T ss_dssp             CCEEEEEEEECTTSHHHHHHHHHHHHHHHHHTTCTTC-------EEEEEEEEETTEEEEEEEEECSCC------------
T ss_pred             CCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-------CEEEEEEECCCCEEEEEEECCCCC------------
T ss_conf             9835830335799974799988899999999759753-------368899973782898776336443------------


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCC--CCCCCCCCEEEHHHHHHHHH
Q ss_conf             1677899999999840858701--25733221000333345677
Q gi|254780423|r   83 VDKEKFEKVVRSVIRSIGYEQE--GFHWETVDVEVLLHSQSSDI  124 (413)
Q Consensus        83 v~~~di~~ivR~~i~~IGY~~~--gfd~~~~~v~~~i~~QS~dI  124 (413)
                      +   ||++|||+++++|||+++  ||||++|.|+++|++|||||
T Consensus        62 v---d~~~ivR~~i~~IGY~~~~~gfd~~~~~V~~~i~~QSpdI  102 (102)
T d1mxaa1          62 V---DIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPDI  102 (102)
T ss_dssp             C---CHHHHHHHHHHHHTCEEGGGTEETTTSEEEEEEEEECCC-
T ss_pred             C---CHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf             5---6789999999986423533662567318998144889998


No 7  
>d2dt5a1 a.4.5.38 (A:4-77) Transcriptional repressor Rex, N-terminal domain {Thermus aquaticus [TaxId: 271]}
Probab=69.83  E-value=2.3  Score=19.97  Aligned_cols=53  Identities=15%  Similarity=0.317  Sum_probs=39.1

Q ss_pred             CCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             888689899999999745999789998608998620210760207898766678954545789999986086
Q gi|254780423|r  342 DSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIGF  413 (413)
Q Consensus       342 gt~~~~d~~i~~~i~~~fdl~p~~Ii~~l~L~~piy~~ta~yGHFGr~~~~~~~f~WE~~d~v~~lk~~~g~  413 (413)
                      |...++-++|.+.    ..++|.-|.+.|..          +|.||+.     .+-+.--++.+.|++.+||
T Consensus        22 g~~~vSS~~La~~----~gi~~~qVRKDls~----------fG~~G~~-----g~GY~V~~L~~~i~~iLGl   74 (74)
T d2dt5a1          22 GVHRTSSEQLGGL----AQVTAFQVRKDLSY----------FGSYGTR-----GVGYTVPVLKRELRHILGL   74 (74)
T ss_dssp             TCCEECHHHHHHH----HTSCHHHHHHHHHH----------TTCCCCT-----TTCEEHHHHHHHHHHHHTT
T ss_pred             CCEEECHHHHHHH----HCCCHHHHHHHHHH----------HCCCCCC-----CCCCCHHHHHHHHHHHHCC
T ss_conf             9915969999999----79699999987998----------6578999-----9990199999999998483


No 8  
>d1w9ha1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=59.69  E-value=3.9  Score=18.57  Aligned_cols=18  Identities=6%  Similarity=0.115  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHCCCCCCCC
Q ss_conf             999999998408587012
Q gi|254780423|r   88 FEKVVRSVIRSIGYEQEG  105 (413)
Q Consensus        88 i~~ivR~~i~~IGY~~~g  105 (413)
                      ..+|+-++.-.+|...+.
T Consensus        61 ~~nI~lqin~KlGG~pw~   78 (316)
T d1w9ha1          61 VDNLLVQFVSKLGGKPWI   78 (316)
T ss_dssp             HHHHHHHHHHHTTCBCCE
T ss_pred             HHHHHHHHHHHHCCCCEE
T ss_conf             999999999973985148


No 9  
>d2f0ca1 b.21.1.3 (A:63-163) Baseplate protein (bpp), C-terminal domain {Lactococcus phage tp901-1 [TaxId: 35345]}
Probab=41.66  E-value=7.1  Score=16.93  Aligned_cols=24  Identities=29%  Similarity=0.324  Sum_probs=18.8

Q ss_pred             CEEEEECCCCEEECCCCCCCCCCCC
Q ss_conf             2799917883785587300365556
Q gi|254780423|r  246 CSWYINPAGKFVIGGPCSDAGLTGR  270 (413)
Q Consensus       246 t~~~INPtG~FviGGP~~D~GLTGR  270 (413)
                      +.+.|||.|.+..=||...+| |=|
T Consensus        70 FHIDi~p~GsitWWG~~~~~~-apR   93 (101)
T d2f0ca1          70 FHIDIPSSGVCQWFGPTASSG-TPR   93 (101)
T ss_dssp             EEEEECTTCCCEECSCCBSSC-CEE
T ss_pred             EEEEECCCCEEEEECCCCCCC-CCC
T ss_conf             689708996489834777899-865


No 10 
>d1u04a2 c.55.3.10 (A:324-770) Argonaute homologue PF0537 {Pyrococcus furiosus [TaxId: 2261]}
Probab=36.53  E-value=10  Score=15.92  Aligned_cols=25  Identities=12%  Similarity=0.048  Sum_probs=13.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             78831689886889999998636012
Q gi|254780423|r   14 EGHPDKICDRISDEIVDLVYREAIES   39 (413)
Q Consensus        14 ~GHPDKicDqISDaILD~~L~~Dp~s   39 (413)
                      --||+|=.+-+-+. +|.++++++..
T Consensus       126 ~~~~~~~~~~~~e~-~~~~~~~~~~~  150 (447)
T d1u04a2         126 DLNSDKGIIEVVEQ-VSSFMKGKELG  150 (447)
T ss_dssp             CTTSHHHHHHHHHH-HHHHHTTCSCE
T ss_pred             CCCCCCCHHHHHHH-HHHHHCCCCCE
T ss_conf             15688765565878-99875358730


No 11 
>d1kjna_ c.115.1.1 (A:) Hypothetical protein MTH777 (MT0777) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=36.21  E-value=5.3  Score=17.71  Aligned_cols=19  Identities=32%  Similarity=0.704  Sum_probs=8.9

Q ss_pred             ECCCCCCCCHHHHHHHHHH
Q ss_conf             0664544875799999999
Q gi|254780423|r  151 CRETADFMPAPIYYAHRIL  169 (413)
Q Consensus       151 c~ET~~~MPlpi~lAh~L~  169 (413)
                      |-|.|-.+|+.++|+|+|.
T Consensus        10 CPe~Pvq~~~~lyl~~~Lk   28 (152)
T d1kjna_          10 CPESPVQIPLAIYTSHKLK   28 (152)
T ss_dssp             CSCSTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHH
T ss_conf             9998613479999999987


No 12 
>d1j3ga_ d.118.1.1 (A:) AmpD protein {Citrobacter freundii [TaxId: 546]}
Probab=33.29  E-value=13  Score=15.18  Aligned_cols=20  Identities=20%  Similarity=0.230  Sum_probs=13.7

Q ss_pred             CCEEEEECCCCEEECCCCCC
Q ss_conf             42799917883785587300
Q gi|254780423|r  245 DCSWYINPAGKFVIGGPCSD  264 (413)
Q Consensus       245 ~t~~~INPtG~FviGGP~~D  264 (413)
                      -..|+|...|..+-.=|..+
T Consensus        73 SaHy~I~~dG~i~q~V~~~~   92 (187)
T d1j3ga_          73 SAHCLIRRDGEIVQYVPFDK   92 (187)
T ss_dssp             BCSEEEETTTEEEECSCSSS
T ss_pred             CCEEEECCCCEEEEEECCCC
T ss_conf             84079733753778513342


No 13 
>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}
Probab=31.23  E-value=9.5  Score=16.12  Aligned_cols=19  Identities=42%  Similarity=0.746  Sum_probs=16.3

Q ss_pred             CCCCCCCEEECCCCCCCCCCC
Q ss_conf             365556111024577666777
Q gi|254780423|r  265 AGLTGRKIIVDTYGGASPHGG  285 (413)
Q Consensus       265 ~GLTGRKiiVDtYGg~~~hGG  285 (413)
                      .-+||.-|.||  |||..|||
T Consensus       239 ~~itG~~i~vD--GG~s~~g~  257 (258)
T d1ae1a_         239 SYITGQIIWAD--GGFTANGG  257 (258)
T ss_dssp             TTCCSCEEEES--TTGGGCSC
T ss_pred             CCCCCCEEEEC--CCEECCCC
T ss_conf             79768189948--99660588


No 14 
>d1zrua1 b.21.1.3 (A:162-264) receptor binding protein, rbp, C-terminal domain {Lactococcus lactis phage p2 [TaxId: 100641]}
Probab=29.59  E-value=15  Score=14.94  Aligned_cols=25  Identities=24%  Similarity=0.315  Sum_probs=16.9

Q ss_pred             CEEEEECCCCEEECCCC-CCCCCCCC
Q ss_conf             27999178837855873-00365556
Q gi|254780423|r  246 CSWYINPAGKFVIGGPC-SDAGLTGR  270 (413)
Q Consensus       246 t~~~INPtG~FviGGP~-~D~GLTGR  270 (413)
                      +.+.|||.|.+..=||. +.+..|-|
T Consensus        70 FHIDi~p~GsitWWG~~~~~~~~apR   95 (103)
T d1zrua1          70 FHIDINPNGSITWWGANIDKTPIATR   95 (103)
T ss_dssp             EEEEECTTSCEEECSCCBCSSCEEEE
T ss_pred             EEEEECCCCEEEEECCCCCCCCCCCC
T ss_conf             78970899648983576578977756


No 15 
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=28.50  E-value=8.6  Score=16.40  Aligned_cols=20  Identities=30%  Similarity=0.615  Sum_probs=16.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             2457766677753356574404
Q gi|254780423|r  275 DTYGGASPHGGGAFSGKDITKV  296 (413)
Q Consensus       275 DtYGg~~~hGGGAfSGKDptKV  296 (413)
                      +.||+-++++  .|.|||.|+.
T Consensus        45 ~~ygpgg~Y~--~faG~D~sra   64 (109)
T d1t0ga_          45 SFYGSGGDYS--MFAGKDASRA   64 (109)
T ss_dssp             TTSTTTCTTT--TTTTEECHHH
T ss_pred             CEECCCCCCC--CCCCCCHHHH
T ss_conf             4088998664--3010327899


No 16 
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=26.85  E-value=17  Score=14.47  Aligned_cols=36  Identities=25%  Similarity=0.314  Sum_probs=25.0

Q ss_pred             CCCH--HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf             4875--7999999999999975203576410011782689999749763
Q gi|254780423|r  157 FMPA--PIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIRYVDNKV  203 (413)
Q Consensus       157 ~MPl--pi~lAh~L~krL~~~Rk~~~g~~~~L~PDgKsQVTveY~~~kP  203 (413)
                      .||.  --.|...|.|||..           .-||++++|+|.|-....
T Consensus        12 ~lp~ga~~aL~~EL~kRl~~-----------~fpD~~~~v~Vr~~sa~~   49 (81)
T d1ghha_          12 PLPAGAIDALAGELSRRIQY-----------AFPDNEGHVSVRYAAANN   49 (81)
T ss_dssp             CCCTTHHHHHHHHHHHHHHH-----------HCSSSCCEEEEEEESSCE
T ss_pred             CCCCHHHHHHHHHHHHHHHH-----------HCCCCCCEEEEEECCCCC
T ss_conf             89802899999999998873-----------589975407986558896


No 17 
>d1bvsa1 a.5.1.1 (A:148-203) DNA helicase RuvA subunit, C-terminal domain {Mycobacterium leprae [TaxId: 1769]}
Probab=26.09  E-value=5.9  Score=17.41  Aligned_cols=28  Identities=18%  Similarity=0.207  Sum_probs=24.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             8878831689886889999998636012
Q gi|254780423|r   12 VSEGHPDKICDRISDEIVDLVYREAIES   39 (413)
Q Consensus        12 Vs~GHPDKicDqISDaILD~~L~~Dp~s   39 (413)
                      |.-|-++|.+.|--|.+|...|..||.+
T Consensus        12 vGLGF~~KqAe~a~d~Vl~~~la~~p~a   39 (56)
T d1bvsa1          12 VGLGFAAKQAEEATDQVLDGELGKDGAV   39 (56)
T ss_dssp             HHHTCCHHHHHHHHHHHHHCC-------
T ss_pred             HHCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             8358407789987768886210258863


No 18 
>d1b3ta_ d.58.8.1 (A:) Epstein barr virus nuclear antigen-1 (ebna1) {Epstein-Barr virus [TaxId: 10376]}
Probab=25.76  E-value=18  Score=14.34  Aligned_cols=10  Identities=30%  Similarity=0.604  Sum_probs=4.6

Q ss_pred             CCCCCEEEEE
Q ss_conf             1178268999
Q gi|254780423|r  187 GPDAKSQVTI  196 (413)
Q Consensus       187 ~PDgKsQVTv  196 (413)
                      .|-.-+||||
T Consensus       128 ~PT~~~~Vtv  137 (147)
T d1b3ta_         128 APTCNIRVTV  137 (147)
T ss_dssp             TTGGGEEEEE
T ss_pred             CCCCCEEEEE
T ss_conf             9976447999


No 19 
>d1yvua2 c.55.3.10 (A:315-706) Argonaute homologue Aq_1447 {Aquifex aeolicus [TaxId: 63363]}
Probab=24.94  E-value=8.5  Score=16.42  Aligned_cols=26  Identities=12%  Similarity=0.089  Sum_probs=15.6

Q ss_pred             CCCCCCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             58355507999824888689899999999
Q gi|254780423|r  328 IGISRPLSIFVDLHDSGKVSESCVANAIN  356 (413)
Q Consensus       328 IG~~~P~si~V~t~gt~~~~d~~i~~~i~  356 (413)
                      -|.++|+.+.|- +++.  +-+.|.+.+-
T Consensus       321 qGT~rP~~Y~vl-~d~~--~~d~l~~lt~  346 (392)
T d1yvua2         321 EGTHQPIKVRKV-YGEL--PVEVLCSQIL  346 (392)
T ss_dssp             TTCCCCEEEEEE-ECSS--CHHHHHHHHH
T ss_pred             CCCCCCCEEEEE-CCCC--CHHHHHHHHH
T ss_conf             877788589998-8989--9899999999


No 20 
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]}
Probab=23.99  E-value=13  Score=15.25  Aligned_cols=10  Identities=20%  Similarity=0.119  Sum_probs=5.1

Q ss_pred             CCHHHHHHHH
Q ss_conf             8757999999
Q gi|254780423|r  158 MPAPIYYAHR  167 (413)
Q Consensus       158 MPlpi~lAh~  167 (413)
                      |-+||.||+-
T Consensus       130 mT~pH~l~r~  139 (157)
T d1to0a_         130 MTFPHQLMRL  139 (157)
T ss_dssp             SCCCHHHHHH
T ss_pred             CCCHHHHHHH
T ss_conf             8765899999


No 21 
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}
Probab=23.58  E-value=20  Score=14.08  Aligned_cols=51  Identities=8%  Similarity=0.189  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHC--CCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEE
Q ss_conf             9999999999997520--35764100117826899997497631454578876
Q gi|254780423|r  163 YYAHRILRTLADARKN--SGGDVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSI  213 (413)
Q Consensus       163 ~lAh~L~krL~~~Rk~--~~g~~~~L~PDgKsQVTveY~~~kP~~i~tVViSt  213 (413)
                      .++..+.+.|.+..-+  ..-.+.....+...+|+++.++++....+.|++++
T Consensus        63 ~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~  115 (116)
T d1gesa2          63 MISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAI  115 (116)
T ss_dssp             HHHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEECCCCEEECCEEEEEC
T ss_conf             36999999999779999939999999986996799998999999929999900


No 22 
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]}
Probab=23.51  E-value=13  Score=15.32  Aligned_cols=11  Identities=18%  Similarity=-0.112  Sum_probs=6.1

Q ss_pred             CCHHHHHHHHH
Q ss_conf             87579999999
Q gi|254780423|r  158 MPAPIYYAHRI  168 (413)
Q Consensus       158 MPlpi~lAh~L  168 (413)
                      |-+||.||+-+
T Consensus       122 mT~pH~l~rv~  132 (147)
T d1o6da_         122 MTFTHGMTVLI  132 (147)
T ss_dssp             SCCCHHHHHHH
T ss_pred             CCCHHHHHHHH
T ss_conf             76647999999


No 23 
>d1xoda1 b.55.1.4 (A:10-123) Sprouty-related, EVH1 domain-containing protein 1, Spred-1 {Western clawed frog (Xenopus tropicalis) [TaxId: 8364]}
Probab=21.86  E-value=9.9  Score=16.00  Aligned_cols=11  Identities=9%  Similarity=-0.142  Sum_probs=4.4

Q ss_pred             HHHHHHCCCCC
Q ss_conf             99998408587
Q gi|254780423|r   92 VRSVIRSIGYE  102 (413)
Q Consensus        92 vR~~i~~IGY~  102 (413)
                      .|..++=+||.
T Consensus        42 ~~~~Y~I~g~~   52 (114)
T d1xoda1          42 GGTEFLVHGER   52 (114)
T ss_dssp             ---CCEEEEEE
T ss_pred             CCCEEEEEEEE
T ss_conf             98359999998


No 24 
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]}
Probab=21.57  E-value=15  Score=14.90  Aligned_cols=10  Identities=20%  Similarity=0.119  Sum_probs=5.3

Q ss_pred             CCHHHHHHHH
Q ss_conf             8757999999
Q gi|254780423|r  158 MPAPIYYAHR  167 (413)
Q Consensus       158 MPlpi~lAh~  167 (413)
                      |-+||.||+-
T Consensus       130 mT~pH~larv  139 (157)
T d1vh0a_         130 MTFPHQMMRV  139 (157)
T ss_dssp             SCCCHHHHHH
T ss_pred             CCCHHHHHHH
T ss_conf             7753599999


No 25 
>d2foka2 a.4.5.12 (A:144-286) Restriction endonuclease FokI, N-terminal (recognition) domain {Flavobacterium okeanokoites [TaxId: 244]}
Probab=21.54  E-value=18  Score=14.32  Aligned_cols=58  Identities=22%  Similarity=0.295  Sum_probs=28.5

Q ss_pred             CCCCCCCCCCC--CEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHE
Q ss_conf             87300365556--111024577666777533565744045778889999999997508232211
Q gi|254780423|r  260 GPCSDAGLTGR--KIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLADRCT  321 (413)
Q Consensus       260 GP~~D~GLTGR--KiiVDtYGg~~~hGGGAfSGKDptKVDRSaAY~AR~iAKniVaagla~~c~  321 (413)
                      |..|..|.|--  -|.+|+-+-.-+.    =-+|=-|-.|-|---+|||||+-+|..||++.-.
T Consensus        42 GF~gE~GFts~p~~i~~~~La~a~~~----ek~kIKsd~egtSDKYaR~i~~wL~~~Glv~q~~  101 (143)
T d2foka2          42 GFSGESGFTSLPEGILLDTLANAMPK----DKGEIRNNWEGSSDKYARMIGGWLDKLGLVKQGK  101 (143)
T ss_dssp             SSTTSTTSCCCCHHHHHHHHHTSCHH----HHHHHHHHCCCHHHHHHHHHHHHHHHTTSEEECC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCHH----HHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEECC
T ss_conf             75566555427688999988640665----7754424666560899999999998715103035


No 26 
>g1uhe.1 b.52.2.1 (B:,A:) Pyruvoyl dependent aspartate decarboxylase, ADC {Helicobacter pylori [TaxId: 210]}
Probab=20.12  E-value=23  Score=13.64  Aligned_cols=29  Identities=17%  Similarity=0.383  Sum_probs=23.6

Q ss_pred             CCCCEEECCCCCCCCCCCCCEEECCCCCC
Q ss_conf             78837855873003655561110245776
Q gi|254780423|r  252 PAGKFVIGGPCSDAGLTGRKIIVDTYGGA  280 (413)
Q Consensus       252 PtG~FviGGP~~D~GLTGRKiiVDtYGg~  280 (413)
                      ++|...+-|+.+..+-.|-+||+=+|+-.
T Consensus        63 ~sg~I~lNGAAA~~~~~GD~vII~sy~~~   91 (121)
T g1uhe.1          63 KRGEICVNGAAARKVAIGDVVIILAYASM   91 (121)
T ss_dssp             STTCEEEEGGGGGGCCTTCEEEEEEEEEE
T ss_pred             CCCEEEECCHHHEECCCCCEEEEEECCCC
T ss_conf             88879855856423489999999982647


Done!