RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780423|ref|YP_003064836.1| S-adenosylmethionine
synthetase [Candidatus Liberibacter asiaticus str. psy62]
         (413 letters)



>gnl|CDD|30541 COG0192, MetK, S-adenosylmethionine synthetase [Coenzyme
           metabolism].
          Length = 388

 Score =  526 bits (1356), Expect = e-150
 Identities = 220/419 (52%), Positives = 271/419 (64%), Gaps = 39/419 (9%)

Query: 1   MSADFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVI 60
           M   FLFTSESVSEGHPDKICD+ISD I+D + ++      D NS RVACE LVT   V+
Sbjct: 1   MKKYFLFTSESVSEGHPDKICDQISDAILDAILKQ------DPNS-RVACETLVTTGLVV 53

Query: 61  VAGEVRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYE--QEGFHWETVDVEVLLH 118
           +AGE+            T  YV        + R  I+ IGY     GF  +T  V V + 
Sbjct: 54  IAGEIT-----------TSAYV----DIVNIARKTIKEIGYTESDYGFDAKTCAVLVAIG 98

Query: 119 SQSSDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKN 178
            QS DIA GVD A ++   +GAGDQGIMFGYAC ET + MP PI  AHR+LR LA+ RKN
Sbjct: 99  EQSPDIAQGVDEADEELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKN 158

Query: 179 SGGDVSKLGPDAKSQVTIRYVDN-KVCEVKSIVLSIQHFDP----TWDRGKVRSVVEPYI 233
             G++  L PDAKSQVT+ Y DN K   + +IV+S QH             +  +++P +
Sbjct: 159 --GELPWLRPDAKSQVTVEYEDNGKPVRIDTIVVSTQHDPDISQEQLREDVIEEIIKPVL 216

Query: 234 LKALEDIKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDI 293
            + L    +     ++INP G+FVIGGP  DAGLTGRKIIVDTYGG + HGGGAFSGKD 
Sbjct: 217 PEEL----LDDKTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDP 272

Query: 294 TKVDRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVAN 353
           TKVDR+AAYAARY+AKNIVAAGLADRC +QLSYAIG++ P+SI VD   +GKVSE  +  
Sbjct: 273 TKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSISVDTFGTGKVSEEKIEE 332

Query: 354 AINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIG 412
           A+ KV DL  +GI   L+L RPIY +T+AYGHFGR  +    FPWE LD ++ LKKA  
Sbjct: 333 AVRKVFDLRPAGIIKMLDLLRPIYRKTAAYGHFGREDD----FPWEKLDKVDELKKAAK 387


>gnl|CDD|36719 KOG1506, KOG1506, KOG1506, S-adenosylmethionine synthetase
           [Coenzyme transport and metabolism].
          Length = 383

 Score =  353 bits (908), Expect = 4e-98
 Identities = 183/408 (44%), Positives = 252/408 (61%), Gaps = 42/408 (10%)

Query: 1   MSADFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVI 60
               FLFTSESV EGHPDK+CD+ISD I+D   ++   +K       VACE +     ++
Sbjct: 2   DMETFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAK-------VACETVTKTGMIM 54

Query: 61  VAGEVRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYE--QEGFHWETVDVEVLLH 118
           + GE            IT + VVD   ++KVVR  I+ IGY+   +GF ++T +V V + 
Sbjct: 55  LCGE------------ITSKAVVD---YQKVVRDTIKKIGYDDSSKGFDYKTCNVLVAIE 99

Query: 119 SQSSDIAYGV--DNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADAR 176
            QS DIA GV  D   +D   +GAGDQGIMFGYA  ET + MP  I  AH++   LA+ R
Sbjct: 100 QQSPDIAQGVHVDKDEED---VGAGDQGIMFGYATDETPECMPLTIVLAHKLNAKLAELR 156

Query: 177 KNSGGDVSKLGPDAKSQVTIRYVDNKVC----EVKSIVLSIQHFDPTWDRGKVRSVVEPY 232
           +N  G +  L PD+K+QVT+ Y+++        V ++V+S QH         +R+ ++  
Sbjct: 157 RN--GTLPWLRPDSKTQVTVEYMNDNGAMVPLRVHTVVISTQH-SEDITLDDLRAELKEK 213

Query: 233 ILKALEDIK-ISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGK 291
           ++K +   K +     +++NP+G+FVIGGP  DAGLTGRKIIVDTYGG   HGGGAFSGK
Sbjct: 214 VIKPVIPAKYLDEKTIYHLNPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGK 273

Query: 292 DITKVDRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCV 351
           D TKVDR+AAYAAR++AK++VAAGL  RC +Q+SYAIG++ PLS+FV  + +   S+  +
Sbjct: 274 DPTKVDRSAAYAARWVAKSLVAAGLCRRCLVQVSYAIGVAEPLSVFVFTYGTSTKSDKEL 333

Query: 352 ANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWE 399
              + K  DL    I  +L+L RPIY +T+AYGHFG        FPWE
Sbjct: 334 LEIVKKNFDLRPGMIVKNLDLKRPIYLKTAAYGHFGDQE-----FPWE 376


>gnl|CDD|111646 pfam02773, S-AdoMet_synt_C, S-adenosylmethionine synthetase,
           C-terminal domain.  The three domains of
           S-adenosylmethionine synthetase have the same alpha+beta
           fold.
          Length = 138

 Score =  209 bits (535), Expect = 9e-55
 Identities = 88/142 (61%), Positives = 104/142 (73%), Gaps = 5/142 (3%)

Query: 258 IGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLA 317
           IGGP  DAGLTGRKIIVDTYGG   HGGGAFSGKD TKVDR+AAYAAR++AK++VAAGLA
Sbjct: 1   IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVAAGLA 60

Query: 318 DRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIY 377
            RC +Q+SYAIG++ PLSI VD + + K SE  +   + K  DL    I   L+L +PIY
Sbjct: 61  RRCLVQVSYAIGVAEPLSIMVDTYGTSKKSEEELLEIVRKNFDLRPGVIVKMLDLKKPIY 120

Query: 378 AQTSAYGHFGRSANQDGFFPWE 399
            QT+AYGHFGR       FPWE
Sbjct: 121 QQTAAYGHFGRDD-----FPWE 137


>gnl|CDD|145757 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine synthetase,
           central domain.  The three domains of
           S-adenosylmethionine synthetase have the same alpha+beta
           fold.
          Length = 119

 Score =  177 bits (451), Expect = 6e-45
 Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 4/120 (3%)

Query: 138 LGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIR 197
           +GAGDQGIMFGYA  ET + MP PI  AHR+LR LA+ RKN  G +  L PD KSQVT+ 
Sbjct: 3   IGAGDQGIMFGYATNETPELMPLPIVLAHRLLRRLAELRKN--GTLPWLRPDGKSQVTVE 60

Query: 198 YVDNKVCEVKSIVLSIQHFDPTWDRGKVR-SVVEPYILKALEDIKISPDCSWYINPAGKF 256
           Y + K   V ++V+S QH DP     ++R  ++E  I   L +  +  D  + INP G+F
Sbjct: 61  YENGKPVRVDTVVVSTQH-DPDVSLEELREDIIEEVIKPVLPEELLDDDTKYLINPTGRF 119


>gnl|CDD|144142 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine synthetase,
           N-terminal domain.  The three domains of
           S-adenosylmethionine synthetase have the same alpha+beta
           fold.
          Length = 98

 Score =  141 bits (357), Expect = 5e-34
 Identities = 57/119 (47%), Positives = 69/119 (57%), Gaps = 24/119 (20%)

Query: 5   FLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGE 64
           +LFTSESVSEGHPDKICD+ISD I+D    +      D NS RVACE LVT   V++AGE
Sbjct: 1   YLFTSESVSEGHPDKICDQISDAILDACLAQ------DPNS-RVACETLVTTGLVVIAGE 53

Query: 65  VRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYEQE--GFHWETVDVEVLLHSQS 121
                       IT +  VD    EK+VR  I+ IGY+    GF  +T  V V +H QS
Sbjct: 54  ------------ITTKAYVD---IEKIVRDTIKDIGYDSSDLGFDADTCAVLVSIHEQS 97


>gnl|CDD|32175 COG1992, COG1992, Uncharacterized conserved protein [Function
           unknown].
          Length = 181

 Score = 30.6 bits (69), Expect = 0.83
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 182 DVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVVEPYILK-ALEDI 240
            V K  PD ++ + IRY +  V  +K + L++  FD + +  +V      + ++ A  ++
Sbjct: 81  TVMKHDPDIRAAINIRYSEEVVEALKDLGLAVSSFDRSKEPEEVEEKEGGWGIESAFREL 140

Query: 241 KISPD 245
             +PD
Sbjct: 141 GGAPD 145


>gnl|CDD|100036 cd02691, PurM-like2, AIR synthase (PurM) related protein, archaeal
           subgroup 2 of unknown function. The family of PurM
           related proteins includes Hydrogen expression/formation
           protein HypE, AIR synthases, FGAM synthase and
           Selenophosphate synthetase (SelD). They all contain two
           conserved domains and seem to dimerize. The N-terminal
           domain forms the dimer interface and is a putative ATP
           binding domain..
          Length = 346

 Score = 28.9 bits (65), Expect = 2.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)

Query: 221 DRGKVRSVVEPYILKALEDIKISP 244
           D  KVRS++ P +LK LE++ I P
Sbjct: 243 DEEKVRSLINPKVLKMLEELGIDP 266


>gnl|CDD|32156 COG1973, HypE, Hydrogenase maturation factor [Posttranslational
           modification, protein turnover, chaperones].
          Length = 449

 Score = 28.3 bits (63), Expect = 3.9
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 220 WDRGKVRSVVEPYILKALEDIKISP 244
           +D  KVRS++ P +LK LE++ I P
Sbjct: 317 FDEEKVRSLINPKVLKMLEELNIDP 341


>gnl|CDD|36120 KOG0902, KOG0902, KOG0902, Phosphatidylinositol 4-kinase [Signal
            transduction mechanisms].
          Length = 1803

 Score = 27.3 bits (60), Expect = 7.1
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 9/43 (20%)

Query: 224  KVRSVVEPY---------ILKALEDIKISPDCSWYINPAGKFV 257
             +   ++PY         IL+ L  IK+ P C    NP    +
Sbjct: 1460 SISGKLKPYPKGDERKKAILEELSKIKVQPGCYLPSNPDAVVL 1502


>gnl|CDD|145229 pfam01941, AdoMet_Synthase, S-adenosylmethionine synthetase
          (AdoMet synthetase).  This family consists of several
          archaebacterial S-adenosylmethionine synthetase
          C(AdoMet synthetase or MAT) (EC 2.5.1.6).
          S-Adenosylmethionine (AdoMet) occupies a central role
          in the metabolism of all cells. The biological roles of
          AdoMet include acting as the primary methyl group
          donor, as a precursor to the polyamines, and as a
          progenitor of a 5'-deoxyadenosyl radical.
          S-Adenosylmethionine synthetase catalyses the only
          known route of AdoMet biosynthesis. The synthetic
          process occurs in a unique reaction in which the
          complete triphosphate chain is displaced from ATP and a
          sulfonium ion formed. MATs from various organisms
          contain ~400-amino acid polypeptide chains.
          Length = 396

 Score = 27.5 bits (62), Expect = 7.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 15 GHPDKICDRISDEI 28
          GHPD ICD I++ +
Sbjct: 28 GHPDSICDGIAEAV 41


>gnl|CDD|30523 COG0174, GlnA, Glutamine synthetase [Amino acid transport and
           metabolism].
          Length = 443

 Score = 27.5 bits (61), Expect = 7.8
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 7/36 (19%)

Query: 135 CSTLGAGDQGIMFGYACRETAD-------FMPAPIY 163
              L A DQ ++F Y  +E A+       FMP P +
Sbjct: 201 DDALKAADQIVIFKYVVKEVAEKHGLTATFMPKPFF 236


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0682    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,902,488
Number of extensions: 257152
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 531
Number of HSP's successfully gapped: 16
Length of query: 413
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 317
Effective length of database: 4,189,273
Effective search space: 1327999541
Effective search space used: 1327999541
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.6 bits)