RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780423|ref|YP_003064836.1| S-adenosylmethionine synthetase [Candidatus Liberibacter asiaticus str. psy62] (413 letters) >gnl|CDD|30541 COG0192, MetK, S-adenosylmethionine synthetase [Coenzyme metabolism]. Length = 388 Score = 526 bits (1356), Expect = e-150 Identities = 220/419 (52%), Positives = 271/419 (64%), Gaps = 39/419 (9%) Query: 1 MSADFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVI 60 M FLFTSESVSEGHPDKICD+ISD I+D + ++ D NS RVACE LVT V+ Sbjct: 1 MKKYFLFTSESVSEGHPDKICDQISDAILDAILKQ------DPNS-RVACETLVTTGLVV 53 Query: 61 VAGEVRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYE--QEGFHWETVDVEVLLH 118 +AGE+ T YV + R I+ IGY GF +T V V + Sbjct: 54 IAGEIT-----------TSAYV----DIVNIARKTIKEIGYTESDYGFDAKTCAVLVAIG 98 Query: 119 SQSSDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKN 178 QS DIA GVD A ++ +GAGDQGIMFGYAC ET + MP PI AHR+LR LA+ RKN Sbjct: 99 EQSPDIAQGVDEADEELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKN 158 Query: 179 SGGDVSKLGPDAKSQVTIRYVDN-KVCEVKSIVLSIQHFDP----TWDRGKVRSVVEPYI 233 G++ L PDAKSQVT+ Y DN K + +IV+S QH + +++P + Sbjct: 159 --GELPWLRPDAKSQVTVEYEDNGKPVRIDTIVVSTQHDPDISQEQLREDVIEEIIKPVL 216 Query: 234 LKALEDIKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDI 293 + L + ++INP G+FVIGGP DAGLTGRKIIVDTYGG + HGGGAFSGKD Sbjct: 217 PEEL----LDDKTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDP 272 Query: 294 TKVDRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVAN 353 TKVDR+AAYAARY+AKNIVAAGLADRC +QLSYAIG++ P+SI VD +GKVSE + Sbjct: 273 TKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSISVDTFGTGKVSEEKIEE 332 Query: 354 AINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIG 412 A+ KV DL +GI L+L RPIY +T+AYGHFGR + FPWE LD ++ LKKA Sbjct: 333 AVRKVFDLRPAGIIKMLDLLRPIYRKTAAYGHFGREDD----FPWEKLDKVDELKKAAK 387 >gnl|CDD|36719 KOG1506, KOG1506, KOG1506, S-adenosylmethionine synthetase [Coenzyme transport and metabolism]. Length = 383 Score = 353 bits (908), Expect = 4e-98 Identities = 183/408 (44%), Positives = 252/408 (61%), Gaps = 42/408 (10%) Query: 1 MSADFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVI 60 FLFTSESV EGHPDK+CD+ISD I+D ++ +K VACE + ++ Sbjct: 2 DMETFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAK-------VACETVTKTGMIM 54 Query: 61 VAGEVRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYE--QEGFHWETVDVEVLLH 118 + GE IT + VVD ++KVVR I+ IGY+ +GF ++T +V V + Sbjct: 55 LCGE------------ITSKAVVD---YQKVVRDTIKKIGYDDSSKGFDYKTCNVLVAIE 99 Query: 119 SQSSDIAYGV--DNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADAR 176 QS DIA GV D +D +GAGDQGIMFGYA ET + MP I AH++ LA+ R Sbjct: 100 QQSPDIAQGVHVDKDEED---VGAGDQGIMFGYATDETPECMPLTIVLAHKLNAKLAELR 156 Query: 177 KNSGGDVSKLGPDAKSQVTIRYVDNKVC----EVKSIVLSIQHFDPTWDRGKVRSVVEPY 232 +N G + L PD+K+QVT+ Y+++ V ++V+S QH +R+ ++ Sbjct: 157 RN--GTLPWLRPDSKTQVTVEYMNDNGAMVPLRVHTVVISTQH-SEDITLDDLRAELKEK 213 Query: 233 ILKALEDIK-ISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGK 291 ++K + K + +++NP+G+FVIGGP DAGLTGRKIIVDTYGG HGGGAFSGK Sbjct: 214 VIKPVIPAKYLDEKTIYHLNPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGK 273 Query: 292 DITKVDRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCV 351 D TKVDR+AAYAAR++AK++VAAGL RC +Q+SYAIG++ PLS+FV + + S+ + Sbjct: 274 DPTKVDRSAAYAARWVAKSLVAAGLCRRCLVQVSYAIGVAEPLSVFVFTYGTSTKSDKEL 333 Query: 352 ANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWE 399 + K DL I +L+L RPIY +T+AYGHFG FPWE Sbjct: 334 LEIVKKNFDLRPGMIVKNLDLKRPIYLKTAAYGHFGDQE-----FPWE 376 >gnl|CDD|111646 pfam02773, S-AdoMet_synt_C, S-adenosylmethionine synthetase, C-terminal domain. The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. Length = 138 Score = 209 bits (535), Expect = 9e-55 Identities = 88/142 (61%), Positives = 104/142 (73%), Gaps = 5/142 (3%) Query: 258 IGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAYAARYLAKNIVAAGLA 317 IGGP DAGLTGRKIIVDTYGG HGGGAFSGKD TKVDR+AAYAAR++AK++VAAGLA Sbjct: 1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVAAGLA 60 Query: 318 DRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMDLSVSGIRDHLNLSRPIY 377 RC +Q+SYAIG++ PLSI VD + + K SE + + K DL I L+L +PIY Sbjct: 61 RRCLVQVSYAIGVAEPLSIMVDTYGTSKKSEEELLEIVRKNFDLRPGVIVKMLDLKKPIY 120 Query: 378 AQTSAYGHFGRSANQDGFFPWE 399 QT+AYGHFGR FPWE Sbjct: 121 QQTAAYGHFGRDD-----FPWE 137 >gnl|CDD|145757 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine synthetase, central domain. The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. Length = 119 Score = 177 bits (451), Expect = 6e-45 Identities = 56/120 (46%), Positives = 74/120 (61%), Gaps = 4/120 (3%) Query: 138 LGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDVSKLGPDAKSQVTIR 197 +GAGDQGIMFGYA ET + MP PI AHR+LR LA+ RKN G + L PD KSQVT+ Sbjct: 3 IGAGDQGIMFGYATNETPELMPLPIVLAHRLLRRLAELRKN--GTLPWLRPDGKSQVTVE 60 Query: 198 YVDNKVCEVKSIVLSIQHFDPTWDRGKVR-SVVEPYILKALEDIKISPDCSWYINPAGKF 256 Y + K V ++V+S QH DP ++R ++E I L + + D + INP G+F Sbjct: 61 YENGKPVRVDTVVVSTQH-DPDVSLEELREDIIEEVIKPVLPEELLDDDTKYLINPTGRF 119 >gnl|CDD|144142 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine synthetase, N-terminal domain. The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. Length = 98 Score = 141 bits (357), Expect = 5e-34 Identities = 57/119 (47%), Positives = 69/119 (57%), Gaps = 24/119 (20%) Query: 5 FLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGE 64 +LFTSESVSEGHPDKICD+ISD I+D + D NS RVACE LVT V++AGE Sbjct: 1 YLFTSESVSEGHPDKICDQISDAILDACLAQ------DPNS-RVACETLVTTGLVVIAGE 53 Query: 65 VRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYEQE--GFHWETVDVEVLLHSQS 121 IT + VD EK+VR I+ IGY+ GF +T V V +H QS Sbjct: 54 ------------ITTKAYVD---IEKIVRDTIKDIGYDSSDLGFDADTCAVLVSIHEQS 97 >gnl|CDD|32175 COG1992, COG1992, Uncharacterized conserved protein [Function unknown]. Length = 181 Score = 30.6 bits (69), Expect = 0.83 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 182 DVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVVEPYILK-ALEDI 240 V K PD ++ + IRY + V +K + L++ FD + + +V + ++ A ++ Sbjct: 81 TVMKHDPDIRAAINIRYSEEVVEALKDLGLAVSSFDRSKEPEEVEEKEGGWGIESAFREL 140 Query: 241 KISPD 245 +PD Sbjct: 141 GGAPD 145 >gnl|CDD|100036 cd02691, PurM-like2, AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.. Length = 346 Score = 28.9 bits (65), Expect = 2.5 Identities = 12/24 (50%), Positives = 17/24 (70%) Query: 221 DRGKVRSVVEPYILKALEDIKISP 244 D KVRS++ P +LK LE++ I P Sbjct: 243 DEEKVRSLINPKVLKMLEELGIDP 266 >gnl|CDD|32156 COG1973, HypE, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]. Length = 449 Score = 28.3 bits (63), Expect = 3.9 Identities = 12/25 (48%), Positives = 18/25 (72%) Query: 220 WDRGKVRSVVEPYILKALEDIKISP 244 +D KVRS++ P +LK LE++ I P Sbjct: 317 FDEEKVRSLINPKVLKMLEELNIDP 341 >gnl|CDD|36120 KOG0902, KOG0902, KOG0902, Phosphatidylinositol 4-kinase [Signal transduction mechanisms]. Length = 1803 Score = 27.3 bits (60), Expect = 7.1 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 9/43 (20%) Query: 224 KVRSVVEPY---------ILKALEDIKISPDCSWYINPAGKFV 257 + ++PY IL+ L IK+ P C NP + Sbjct: 1460 SISGKLKPYPKGDERKKAILEELSKIKVQPGCYLPSNPDAVVL 1502 >gnl|CDD|145229 pfam01941, AdoMet_Synthase, S-adenosylmethionine synthetase (AdoMet synthetase). This family consists of several archaebacterial S-adenosylmethionine synthetase C(AdoMet synthetase or MAT) (EC 2.5.1.6). S-Adenosylmethionine (AdoMet) occupies a central role in the metabolism of all cells. The biological roles of AdoMet include acting as the primary methyl group donor, as a precursor to the polyamines, and as a progenitor of a 5'-deoxyadenosyl radical. S-Adenosylmethionine synthetase catalyses the only known route of AdoMet biosynthesis. The synthetic process occurs in a unique reaction in which the complete triphosphate chain is displaced from ATP and a sulfonium ion formed. MATs from various organisms contain ~400-amino acid polypeptide chains. Length = 396 Score = 27.5 bits (62), Expect = 7.4 Identities = 8/14 (57%), Positives = 11/14 (78%) Query: 15 GHPDKICDRISDEI 28 GHPD ICD I++ + Sbjct: 28 GHPDSICDGIAEAV 41 >gnl|CDD|30523 COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]. Length = 443 Score = 27.5 bits (61), Expect = 7.8 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 7/36 (19%) Query: 135 CSTLGAGDQGIMFGYACRETAD-------FMPAPIY 163 L A DQ ++F Y +E A+ FMP P + Sbjct: 201 DDALKAADQIVIFKYVVKEVAEKHGLTATFMPKPFF 236 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.136 0.403 Gapped Lambda K H 0.267 0.0682 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,902,488 Number of extensions: 257152 Number of successful extensions: 551 Number of sequences better than 10.0: 1 Number of HSP's gapped: 531 Number of HSP's successfully gapped: 16 Length of query: 413 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 317 Effective length of database: 4,189,273 Effective search space: 1327999541 Effective search space used: 1327999541 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (26.6 bits)