RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780423|ref|YP_003064836.1| S-adenosylmethionine
synthetase [Candidatus Liberibacter asiaticus str. psy62]
         (413 letters)



>gnl|CDD|179974 PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.
          Length = 384

 Score =  623 bits (1610), Expect = e-179
 Identities = 220/412 (53%), Positives = 269/412 (65%), Gaps = 33/412 (8%)

Query: 4   DFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAG 63
            +LFTSESVSEGHPDKI D+ISD I+D +  +      D N+ RVACE LVT   V+VAG
Sbjct: 2   RYLFTSESVSEGHPDKIADQISDAILDAILAQ------DPNA-RVACETLVTTGLVVVAG 54

Query: 64  EVRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYEQ--EGFHWETVDVEVLLHSQS 121
           E+            T  YV      E++VR  I+ IGY     GF   T  V V +  QS
Sbjct: 55  EIT-----------TSAYV----DIEEIVRETIKEIGYTSSEYGFDANTCAVLVSIGEQS 99

Query: 122 SDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGG 181
            DIA GVD    D   +GAGDQGIMFGYAC ET + MP PI  AHR++R LA+ RK+  G
Sbjct: 100 PDIAQGVDRDELD--EIGAGDQGIMFGYACNETPELMPLPITLAHRLVRRLAEVRKS--G 155

Query: 182 DVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRS-VVEPYILKALEDI 240
            +  L PDAKSQVT+ Y + K   + +IV+S QH DP   + ++R  V+E  I   L   
Sbjct: 156 TLPYLRPDAKSQVTVEYENGKPVRIDTIVVSTQH-DPDVSQEQLREDVIEEVIKPVLPAE 214

Query: 241 KISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAA 300
            +  D  + INP G+FVIGGP  DAGLTGRKIIVDTYGG + HGGGAFSGKD TKVDR+A
Sbjct: 215 LLDEDTKFLINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSA 274

Query: 301 AYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMD 360
           AYAARY+AKNIVAAGLADRC +QLSYAIG++ P+SI+VD   +GKVS+  +  A+ +V D
Sbjct: 275 AYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSIYVDTFGTGKVSDEKIEEAVREVFD 334

Query: 361 LSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIG 412
           L  +GI   L+L RPIY +T+AYGHFGR    D  FPWE  D +E LK A G
Sbjct: 335 LRPAGIIKMLDLRRPIYRKTAAYGHFGRE---DLDFPWEKTDKVEALKAAAG 383


>gnl|CDD|183537 PRK12459, PRK12459, S-adenosylmethionine synthetase; Provisional.
          Length = 386

 Score =  497 bits (1281), Expect = e-141
 Identities = 212/413 (51%), Positives = 263/413 (63%), Gaps = 34/413 (8%)

Query: 4   DFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAG 63
            FLFTSESV+EGHPDK+CD+ISD I+D   R+      D  S RVACEVLV+   VIVAG
Sbjct: 3   TFLFTSESVTEGHPDKLCDQISDAILDACLRQ------DPAS-RVACEVLVSTGIVIVAG 55

Query: 64  EVRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYEQEGFHWETVDVEVLLHSQSSD 123
           E            IT    VD    EK+VR+VI+ IGY++ GF   T  V V L  QS D
Sbjct: 56  E------------ITSSAKVD---IEKIVRNVIKEIGYDELGFDPRTCTVLVSLGEQSPD 100

Query: 124 IAYGVDNASDDCST---LGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSG 180
           IA GVD A         LGAGDQG MFGYAC ET + MP PI  AHR+ + L  ARK   
Sbjct: 101 IAQGVDTAEGRDEELEELGAGDQGTMFGYACDETPELMPLPIVLAHRLAKRLDQARK--D 158

Query: 181 GDVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVVEPYILKA-LED 239
           G +  L PD K+QVT+ Y D +   V +IV+S QH D + D   +R  V   ++K   ED
Sbjct: 159 GLLPGLLPDGKTQVTVEYEDGRPVRVDTIVVSAQH-DESVDLETLRRDVIENVIKPVFED 217

Query: 240 IKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRA 299
             +  +    INP G+FV+GGP +D GLTGRKI+VDTYGG + HGGGAFSGKD +KVDR+
Sbjct: 218 FWLDDETRILINPTGRFVVGGPAADTGLTGRKIMVDTYGGYARHGGGAFSGKDPSKVDRS 277

Query: 300 AAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVM 359
           AAYAARY+AKNIVAAGLA RC +QLSYAIG +RP+S+ V+   +G VS+  +  A+ +  
Sbjct: 278 AAYAARYIAKNIVAAGLAKRCEVQLSYAIGKARPVSVQVNTFGTGTVSDEELTRAVREHF 337

Query: 360 DLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIG 412
           DL  +GI + LNL  PIY +T+AYGHFGR+      FPWE  D    L+ A+G
Sbjct: 338 DLRPAGIIEKLNLRNPIYRKTAAYGHFGRTL-----FPWEKTDKAALLRAAVG 385


>gnl|CDD|162167 TIGR01034, metK, S-adenosylmethionine synthetase.  Tandem isozymes
           of this S-adenosylmethionine synthetase in E. coli are
           designated MetK and MetX.
          Length = 377

 Score =  446 bits (1150), Expect = e-126
 Identities = 202/409 (49%), Positives = 257/409 (62%), Gaps = 35/409 (8%)

Query: 6   LFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGEV 65
           LFTSESVSEGHPDKI D+ISD ++D +       K D  + +VACE  V    V++ GE 
Sbjct: 1   LFTSESVSEGHPDKIADQISDAVLDAIL------KQDPKA-KVACETFVKTGLVLIGGE- 52

Query: 66  RLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYE--QEGFHWETVDVEVLLHSQSSD 123
                      IT    VD    ++V R+ I+ IGY     GF  +T  V V + +QS D
Sbjct: 53  -----------ITTSAYVD---IQEVARNTIKDIGYTDSDYGFDAKTCAVLVAIGNQSPD 98

Query: 124 IAYGVDNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDV 183
           IA GVD A  +    GAGDQGIMFGYA  ET + MP PI  AH++L+  A+ RK+  G +
Sbjct: 99  IAQGVDKA--NPEEQGAGDQGIMFGYATNETPELMPLPITLAHKLLKRAAELRKS--GTL 154

Query: 184 SKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVV-EPYILKALEDIKI 242
             L PD KSQVT++Y DNK   V +IVLS QH DP   +  +R  + E  I   L    +
Sbjct: 155 PWLRPDGKSQVTVQYEDNKPVRVDTIVLSTQH-DPDISQKDLREAIIEEIIKPVLPAEYL 213

Query: 243 SPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAY 302
                ++INP G+FVIGGP  D GLTGRKIIVDTYGG + HGGGAFSGKD +KVDR+AAY
Sbjct: 214 DEKTKFFINPTGRFVIGGPMGDTGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAY 273

Query: 303 AARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMDLS 362
           AARY+AKNIVAAGLADRC +QLSYAIG++ P+SI ++   + K SE  + N + +  DL 
Sbjct: 274 AARYIAKNIVAAGLADRCEVQLSYAIGVAEPVSIMIETFGTSKKSEEELLNVVKENFDLR 333

Query: 363 VSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAI 411
             GI + L+L +PIY +T+ YGHFGR       FPWE  D +E LK+A+
Sbjct: 334 PGGIIEKLDLLKPIYRKTAVYGHFGREE-----FPWEKPDKLEELKRAL 377


>gnl|CDD|185448 PTZ00104, PTZ00104, S-adenosylmethionine synthase; Provisional.
          Length = 398

 Score =  409 bits (1052), Expect = e-114
 Identities = 185/413 (44%), Positives = 247/413 (59%), Gaps = 47/413 (11%)

Query: 1   MSADFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVI 60
               FLFTSESVSEGHPDK+CD+ISD ++D    +   SK       VACE       V+
Sbjct: 7   SVGHFLFTSESVSEGHPDKLCDQISDAVLDACLAQDPLSK-------VACETCAKTGMVM 59

Query: 61  VAGEVRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYEQE--GFHWETVDVEVLLH 118
           V GE            IT + VVD   ++KVVR  ++ IGY+    G  ++T +V V + 
Sbjct: 60  VFGE------------ITTKAVVD---YQKVVRDTVKEIGYDDTEKGLDYKTCNVLVAIE 104

Query: 119 SQSSDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKN 178
            QS DIA GV     +   +GAGDQGIMFGYA  ET + MP     A ++ + L++ RKN
Sbjct: 105 QQSPDIAQGVHVGKKE-EDIGAGDQGIMFGYATDETEELMPLTHELATKLAKRLSELRKN 163

Query: 179 SGGDVSKLGPDAKSQVTIRYVDNKVCE-----VKSIVLSIQHFDPTWDRGKVRS-----V 228
             G +  L PDAK+QVT+ Y  +         V +I++S QH D      ++R      V
Sbjct: 164 --GILPWLRPDAKTQVTVEYEYDTRGGLTPKRVHTILISTQH-DEGVSNEEIREDLMEHV 220

Query: 229 VEPYILKALEDIKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAF 288
           ++P I   L D     +  +++NP+G+FVIGGP  DAGLTGRKIIVDTYGG   HGGGAF
Sbjct: 221 IKPVIPAKLLD----EETKYHLNPSGRFVIGGPHGDAGLTGRKIIVDTYGGWGAHGGGAF 276

Query: 289 SGKDITKVDRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGK--V 346
           SGKD +KVDR+AAYAAR++AK++VAAGL  RC +Q+SYAIG++ PLSI V+ + +GK   
Sbjct: 277 SGKDPSKVDRSAAYAARWIAKSLVAAGLCKRCLVQVSYAIGVAEPLSIHVNTYGTGKKGY 336

Query: 347 SESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWE 399
            +  +   + K  DL    I   L+L RPI+ +T++YGHFGRS   D  F WE
Sbjct: 337 DDEDLLEIVQKNFDLRPGDIIKELDLRRPIFQKTASYGHFGRS---DPEFTWE 386


>gnl|CDD|177886 PLN02243, PLN02243, S-adenosylmethionine synthase.
          Length = 386

 Score =  339 bits (871), Expect = 8e-94
 Identities = 171/409 (41%), Positives = 237/409 (57%), Gaps = 39/409 (9%)

Query: 5   FLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGE 64
           FLFTSESV+EGHPDK+CD+ISD ++D    +  +SK       VACE     N V+V GE
Sbjct: 4   FLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSK-------VACETCTKTNMVMVFGE 56

Query: 65  VRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYEQE--GFHWETVDVEVLLHSQSS 122
                       IT +  VD   +EK+VR   R IG+  +  G   +   V V +  QS 
Sbjct: 57  ------------ITTKAKVD---YEKIVRDTCREIGFVSDDVGLDADKCKVLVNIEQQSP 101

Query: 123 DIAYGVD-NASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGG 181
           DIA GV  + +     +GAGDQG MFGYA  ET + MP     A ++   L + RKN  G
Sbjct: 102 DIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKN--G 159

Query: 182 DVSKLGPDAKSQVTIRYVDNKVC----EVKSIVLSIQHFDPTWDRGKVRSVVEPYILK-A 236
               L PD K+QVT+ Y +         V ++++S QH D T    ++ + ++ +++K  
Sbjct: 160 TCPWLRPDGKTQVTVEYKNEGGAMVPIRVHTVLISTQH-DETVTNDEIAADLKEHVIKPV 218

Query: 237 LEDIKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKV 296
           + +  +     +++NP+G+FVIGGP  DAGLTGRKII+DTYGG   HGGGAFSGKD TKV
Sbjct: 219 IPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKV 278

Query: 297 DRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAIN 356
           DR+ AY  R  AK++VAAGLA RC +Q+SYAIG+  PLS+FVD + +GK+ +  +   + 
Sbjct: 279 DRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVK 338

Query: 357 KVMDLSVSGIRDHLNLSR---PIYAQTSAYGHFGRSANQDGFFPWEALD 402
           +  D     I  +L+L R     + +T+AYGHFGR    D  F WE + 
Sbjct: 339 ENFDFRPGMIAINLDLKRGGNGRFQKTAAYGHFGR---DDPDFTWEVVK 384


>gnl|CDD|179849 PRK04439, PRK04439, S-adenosylmethionine synthetase; Provisional.
          Length = 399

 Score = 29.0 bits (66), Expect = 2.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 15 GHPDKICDRISDEI 28
          GHPD ICD I++ +
Sbjct: 28 GHPDTICDGIAEAV 41


>gnl|CDD|184314 PRK13767, PRK13767, ATP-dependent helicase; Provisional.
          Length = 876

 Score = 27.9 bits (63), Expect = 4.9
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 7/39 (17%)

Query: 32  VYREAIESKMDVNSVRVACEVLVTKNKVIVAGEVRLPHG 70
            YRE +E  MD+ +     EVL    + I  GE+ +  G
Sbjct: 794 TYREILEDYMDIENAE---EVL----EKIRDGEIEVVIG 825


>gnl|CDD|132272 TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxygenase, large
           subunit.  Anthranilate (2-aminobenzoate) is an
           intermediate of tryptophan (Trp) biosynthesis and
           degradation. Members of this family are the large
           subunit of anthranilate 1,2-dioxygenase, which acts in
           Trp degradation by converting anthranilate to catechol.
           Closely related paralogs typically are the benzoate
           1,2-dioxygenase large subunit, among the larger set of
           ring-hydroxylating dioxygenases.
          Length = 438

 Score = 27.6 bits (61), Expect = 6.3
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 104 EGFHWETVD---VEVLLHSQSSDIAYGVDNASDDCSTLGAGD 142
           +G+H  TV    V  + H Q  + A G + A+ D S LGAGD
Sbjct: 205 DGYHVSTVHYNYVATVQHRQQVNAAKGGELATLDYSKLGAGD 246


>gnl|CDD|185492 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit;
           Provisional.
          Length = 1054

 Score = 27.3 bits (61), Expect = 7.0
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 220 WDRGKVRSVVE---PYILKALEDIKISPDCSWYINPAGKFVI 258
           WD  ++    E   P++L+ L D  I+   SW   P GK+ I
Sbjct: 188 WDGIRLFQTYESNVPFVLRFLIDNNIT-GGSWLTLPKGKYKI 228


>gnl|CDD|178163 PLN02548, PLN02548, adenosine kinase.
          Length = 332

 Score = 27.4 bits (61), Expect = 7.3
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)

Query: 273 IVDTYGGASPHGGGAFS----GKDITKVDRAAAYAARYL 307
           +VDT G      GG  S    GKDI +  RA  YAA  +
Sbjct: 279 LVDTNGAGDAFVGGFLSQLVQGKDIEECVRAGNYAANVI 317


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0565    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,720,919
Number of extensions: 435025
Number of successful extensions: 834
Number of sequences better than 10.0: 1
Number of HSP's gapped: 801
Number of HSP's successfully gapped: 17
Length of query: 413
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 317
Effective length of database: 3,920,105
Effective search space: 1242673285
Effective search space used: 1242673285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.5 bits)