RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780423|ref|YP_003064836.1| S-adenosylmethionine synthetase [Candidatus Liberibacter asiaticus str. psy62] (413 letters) >gnl|CDD|179974 PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated. Length = 384 Score = 623 bits (1610), Expect = e-179 Identities = 220/412 (53%), Positives = 269/412 (65%), Gaps = 33/412 (8%) Query: 4 DFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAG 63 +LFTSESVSEGHPDKI D+ISD I+D + + D N+ RVACE LVT V+VAG Sbjct: 2 RYLFTSESVSEGHPDKIADQISDAILDAILAQ------DPNA-RVACETLVTTGLVVVAG 54 Query: 64 EVRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYEQ--EGFHWETVDVEVLLHSQS 121 E+ T YV E++VR I+ IGY GF T V V + QS Sbjct: 55 EIT-----------TSAYV----DIEEIVRETIKEIGYTSSEYGFDANTCAVLVSIGEQS 99 Query: 122 SDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGG 181 DIA GVD D +GAGDQGIMFGYAC ET + MP PI AHR++R LA+ RK+ G Sbjct: 100 PDIAQGVDRDELD--EIGAGDQGIMFGYACNETPELMPLPITLAHRLVRRLAEVRKS--G 155 Query: 182 DVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRS-VVEPYILKALEDI 240 + L PDAKSQVT+ Y + K + +IV+S QH DP + ++R V+E I L Sbjct: 156 TLPYLRPDAKSQVTVEYENGKPVRIDTIVVSTQH-DPDVSQEQLREDVIEEVIKPVLPAE 214 Query: 241 KISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAA 300 + D + INP G+FVIGGP DAGLTGRKIIVDTYGG + HGGGAFSGKD TKVDR+A Sbjct: 215 LLDEDTKFLINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSA 274 Query: 301 AYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMD 360 AYAARY+AKNIVAAGLADRC +QLSYAIG++ P+SI+VD +GKVS+ + A+ +V D Sbjct: 275 AYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSIYVDTFGTGKVSDEKIEEAVREVFD 334 Query: 361 LSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIG 412 L +GI L+L RPIY +T+AYGHFGR D FPWE D +E LK A G Sbjct: 335 LRPAGIIKMLDLRRPIYRKTAAYGHFGRE---DLDFPWEKTDKVEALKAAAG 383 >gnl|CDD|183537 PRK12459, PRK12459, S-adenosylmethionine synthetase; Provisional. Length = 386 Score = 497 bits (1281), Expect = e-141 Identities = 212/413 (51%), Positives = 263/413 (63%), Gaps = 34/413 (8%) Query: 4 DFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAG 63 FLFTSESV+EGHPDK+CD+ISD I+D R+ D S RVACEVLV+ VIVAG Sbjct: 3 TFLFTSESVTEGHPDKLCDQISDAILDACLRQ------DPAS-RVACEVLVSTGIVIVAG 55 Query: 64 EVRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYEQEGFHWETVDVEVLLHSQSSD 123 E IT VD EK+VR+VI+ IGY++ GF T V V L QS D Sbjct: 56 E------------ITSSAKVD---IEKIVRNVIKEIGYDELGFDPRTCTVLVSLGEQSPD 100 Query: 124 IAYGVDNASDDCST---LGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSG 180 IA GVD A LGAGDQG MFGYAC ET + MP PI AHR+ + L ARK Sbjct: 101 IAQGVDTAEGRDEELEELGAGDQGTMFGYACDETPELMPLPIVLAHRLAKRLDQARK--D 158 Query: 181 GDVSKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVVEPYILKA-LED 239 G + L PD K+QVT+ Y D + V +IV+S QH D + D +R V ++K ED Sbjct: 159 GLLPGLLPDGKTQVTVEYEDGRPVRVDTIVVSAQH-DESVDLETLRRDVIENVIKPVFED 217 Query: 240 IKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRA 299 + + INP G+FV+GGP +D GLTGRKI+VDTYGG + HGGGAFSGKD +KVDR+ Sbjct: 218 FWLDDETRILINPTGRFVVGGPAADTGLTGRKIMVDTYGGYARHGGGAFSGKDPSKVDRS 277 Query: 300 AAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVM 359 AAYAARY+AKNIVAAGLA RC +QLSYAIG +RP+S+ V+ +G VS+ + A+ + Sbjct: 278 AAYAARYIAKNIVAAGLAKRCEVQLSYAIGKARPVSVQVNTFGTGTVSDEELTRAVREHF 337 Query: 360 DLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAIG 412 DL +GI + LNL PIY +T+AYGHFGR+ FPWE D L+ A+G Sbjct: 338 DLRPAGIIEKLNLRNPIYRKTAAYGHFGRTL-----FPWEKTDKAALLRAAVG 385 >gnl|CDD|162167 TIGR01034, metK, S-adenosylmethionine synthetase. Tandem isozymes of this S-adenosylmethionine synthetase in E. coli are designated MetK and MetX. Length = 377 Score = 446 bits (1150), Expect = e-126 Identities = 202/409 (49%), Positives = 257/409 (62%), Gaps = 35/409 (8%) Query: 6 LFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGEV 65 LFTSESVSEGHPDKI D+ISD ++D + K D + +VACE V V++ GE Sbjct: 1 LFTSESVSEGHPDKIADQISDAVLDAIL------KQDPKA-KVACETFVKTGLVLIGGE- 52 Query: 66 RLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYE--QEGFHWETVDVEVLLHSQSSD 123 IT VD ++V R+ I+ IGY GF +T V V + +QS D Sbjct: 53 -----------ITTSAYVD---IQEVARNTIKDIGYTDSDYGFDAKTCAVLVAIGNQSPD 98 Query: 124 IAYGVDNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGGDV 183 IA GVD A + GAGDQGIMFGYA ET + MP PI AH++L+ A+ RK+ G + Sbjct: 99 IAQGVDKA--NPEEQGAGDQGIMFGYATNETPELMPLPITLAHKLLKRAAELRKS--GTL 154 Query: 184 SKLGPDAKSQVTIRYVDNKVCEVKSIVLSIQHFDPTWDRGKVRSVV-EPYILKALEDIKI 242 L PD KSQVT++Y DNK V +IVLS QH DP + +R + E I L + Sbjct: 155 PWLRPDGKSQVTVQYEDNKPVRVDTIVLSTQH-DPDISQKDLREAIIEEIIKPVLPAEYL 213 Query: 243 SPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKVDRAAAY 302 ++INP G+FVIGGP D GLTGRKIIVDTYGG + HGGGAFSGKD +KVDR+AAY Sbjct: 214 DEKTKFFINPTGRFVIGGPMGDTGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAY 273 Query: 303 AARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAINKVMDLS 362 AARY+AKNIVAAGLADRC +QLSYAIG++ P+SI ++ + K SE + N + + DL Sbjct: 274 AARYIAKNIVAAGLADRCEVQLSYAIGVAEPVSIMIETFGTSKKSEEELLNVVKENFDLR 333 Query: 363 VSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWEALDLIEPLKKAI 411 GI + L+L +PIY +T+ YGHFGR FPWE D +E LK+A+ Sbjct: 334 PGGIIEKLDLLKPIYRKTAVYGHFGREE-----FPWEKPDKLEELKRAL 377 >gnl|CDD|185448 PTZ00104, PTZ00104, S-adenosylmethionine synthase; Provisional. Length = 398 Score = 409 bits (1052), Expect = e-114 Identities = 185/413 (44%), Positives = 247/413 (59%), Gaps = 47/413 (11%) Query: 1 MSADFLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVI 60 FLFTSESVSEGHPDK+CD+ISD ++D + SK VACE V+ Sbjct: 7 SVGHFLFTSESVSEGHPDKLCDQISDAVLDACLAQDPLSK-------VACETCAKTGMVM 59 Query: 61 VAGEVRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYEQE--GFHWETVDVEVLLH 118 V GE IT + VVD ++KVVR ++ IGY+ G ++T +V V + Sbjct: 60 VFGE------------ITTKAVVD---YQKVVRDTVKEIGYDDTEKGLDYKTCNVLVAIE 104 Query: 119 SQSSDIAYGVDNASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKN 178 QS DIA GV + +GAGDQGIMFGYA ET + MP A ++ + L++ RKN Sbjct: 105 QQSPDIAQGVHVGKKE-EDIGAGDQGIMFGYATDETEELMPLTHELATKLAKRLSELRKN 163 Query: 179 SGGDVSKLGPDAKSQVTIRYVDNKVCE-----VKSIVLSIQHFDPTWDRGKVRS-----V 228 G + L PDAK+QVT+ Y + V +I++S QH D ++R V Sbjct: 164 --GILPWLRPDAKTQVTVEYEYDTRGGLTPKRVHTILISTQH-DEGVSNEEIREDLMEHV 220 Query: 229 VEPYILKALEDIKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAF 288 ++P I L D + +++NP+G+FVIGGP DAGLTGRKIIVDTYGG HGGGAF Sbjct: 221 IKPVIPAKLLD----EETKYHLNPSGRFVIGGPHGDAGLTGRKIIVDTYGGWGAHGGGAF 276 Query: 289 SGKDITKVDRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGK--V 346 SGKD +KVDR+AAYAAR++AK++VAAGL RC +Q+SYAIG++ PLSI V+ + +GK Sbjct: 277 SGKDPSKVDRSAAYAARWIAKSLVAAGLCKRCLVQVSYAIGVAEPLSIHVNTYGTGKKGY 336 Query: 347 SESCVANAINKVMDLSVSGIRDHLNLSRPIYAQTSAYGHFGRSANQDGFFPWE 399 + + + K DL I L+L RPI+ +T++YGHFGRS D F WE Sbjct: 337 DDEDLLEIVQKNFDLRPGDIIKELDLRRPIFQKTASYGHFGRS---DPEFTWE 386 >gnl|CDD|177886 PLN02243, PLN02243, S-adenosylmethionine synthase. Length = 386 Score = 339 bits (871), Expect = 8e-94 Identities = 171/409 (41%), Positives = 237/409 (57%), Gaps = 39/409 (9%) Query: 5 FLFTSESVSEGHPDKICDRISDEIVDLVYREAIESKMDVNSVRVACEVLVTKNKVIVAGE 64 FLFTSESV+EGHPDK+CD+ISD ++D + +SK VACE N V+V GE Sbjct: 4 FLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSK-------VACETCTKTNMVMVFGE 56 Query: 65 VRLPHGLSKKDSITGQYVVDKEKFEKVVRSVIRSIGYEQE--GFHWETVDVEVLLHSQSS 122 IT + VD +EK+VR R IG+ + G + V V + QS Sbjct: 57 ------------ITTKAKVD---YEKIVRDTCREIGFVSDDVGLDADKCKVLVNIEQQSP 101 Query: 123 DIAYGVD-NASDDCSTLGAGDQGIMFGYACRETADFMPAPIYYAHRILRTLADARKNSGG 181 DIA GV + + +GAGDQG MFGYA ET + MP A ++ L + RKN G Sbjct: 102 DIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKN--G 159 Query: 182 DVSKLGPDAKSQVTIRYVDNKVC----EVKSIVLSIQHFDPTWDRGKVRSVVEPYILK-A 236 L PD K+QVT+ Y + V ++++S QH D T ++ + ++ +++K Sbjct: 160 TCPWLRPDGKTQVTVEYKNEGGAMVPIRVHTVLISTQH-DETVTNDEIAADLKEHVIKPV 218 Query: 237 LEDIKISPDCSWYINPAGKFVIGGPCSDAGLTGRKIIVDTYGGASPHGGGAFSGKDITKV 296 + + + +++NP+G+FVIGGP DAGLTGRKII+DTYGG HGGGAFSGKD TKV Sbjct: 219 IPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKV 278 Query: 297 DRAAAYAARYLAKNIVAAGLADRCTIQLSYAIGISRPLSIFVDLHDSGKVSESCVANAIN 356 DR+ AY R AK++VAAGLA RC +Q+SYAIG+ PLS+FVD + +GK+ + + + Sbjct: 279 DRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVK 338 Query: 357 KVMDLSVSGIRDHLNLSR---PIYAQTSAYGHFGRSANQDGFFPWEALD 402 + D I +L+L R + +T+AYGHFGR D F WE + Sbjct: 339 ENFDFRPGMIAINLDLKRGGNGRFQKTAAYGHFGR---DDPDFTWEVVK 384 >gnl|CDD|179849 PRK04439, PRK04439, S-adenosylmethionine synthetase; Provisional. Length = 399 Score = 29.0 bits (66), Expect = 2.6 Identities = 8/14 (57%), Positives = 11/14 (78%) Query: 15 GHPDKICDRISDEI 28 GHPD ICD I++ + Sbjct: 28 GHPDTICDGIAEAV 41 >gnl|CDD|184314 PRK13767, PRK13767, ATP-dependent helicase; Provisional. Length = 876 Score = 27.9 bits (63), Expect = 4.9 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 7/39 (17%) Query: 32 VYREAIESKMDVNSVRVACEVLVTKNKVIVAGEVRLPHG 70 YRE +E MD+ + EVL + I GE+ + G Sbjct: 794 TYREILEDYMDIENAE---EVL----EKIRDGEIEVVIG 825 >gnl|CDD|132272 TIGR03228, anthran_1_2_A, anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases. Length = 438 Score = 27.6 bits (61), Expect = 6.3 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Query: 104 EGFHWETVD---VEVLLHSQSSDIAYGVDNASDDCSTLGAGD 142 +G+H TV V + H Q + A G + A+ D S LGAGD Sbjct: 205 DGYHVSTVHYNYVATVQHRQQVNAAKGGELATLDYSKLGAGD 246 >gnl|CDD|185492 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit; Provisional. Length = 1054 Score = 27.3 bits (61), Expect = 7.0 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%) Query: 220 WDRGKVRSVVE---PYILKALEDIKISPDCSWYINPAGKFVI 258 WD ++ E P++L+ L D I+ SW P GK+ I Sbjct: 188 WDGIRLFQTYESNVPFVLRFLIDNNIT-GGSWLTLPKGKYKI 228 >gnl|CDD|178163 PLN02548, PLN02548, adenosine kinase. Length = 332 Score = 27.4 bits (61), Expect = 7.3 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%) Query: 273 IVDTYGGASPHGGGAFS----GKDITKVDRAAAYAARYL 307 +VDT G GG S GKDI + RA YAA + Sbjct: 279 LVDTNGAGDAFVGGFLSQLVQGKDIEECVRAGNYAANVI 317 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.136 0.403 Gapped Lambda K H 0.267 0.0565 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,720,919 Number of extensions: 435025 Number of successful extensions: 834 Number of sequences better than 10.0: 1 Number of HSP's gapped: 801 Number of HSP's successfully gapped: 17 Length of query: 413 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 317 Effective length of database: 3,920,105 Effective search space: 1242673285 Effective search space used: 1242673285 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.5 bits)