HHsearch alignment for GI: 254780424 and conserved domain: COG3423
>COG3423 Nlp Predicted transcriptional regulator [Transcription].
Probab=94.84 E-value=0.092 Score=31.47 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=46.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 999999981997999999872469999998528988358999999975499999950677
Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 (144)
Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~ 77 (144)
T Consensus 12 dI~A~Lkk~G~Sl~~LS~~agls~~tL~n~L~rp-~pkgEri--IA~algv~P~eIWp~R 68 (82)
T COG3423 12 DIIAALKKKGTSLAALSREAGLSSSTLANALDRP-WPKGERI--IADALGVPPEEIWPSR 68 (82)
T ss_pred HHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCC-CCHHHHH--HHHHHCCCHHHHCCHH
T ss_conf 9999999856429999988087878999987478-8718899--9999589888818342