HHsearch alignment for GI: 254780424 and conserved domain: COG5499

>COG5499 Predicted transcription regulator containing HTH domain [Transcription].
Probab=97.82  E-value=6.1e-05  Score=51.84  Aligned_cols=64  Identities=17%  Similarity=0.311  Sum_probs=59.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf             6689989999999999999981997999999872469999998528988358999999975499999950
Q gi|254780424|r    5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF   74 (144)
Q Consensus         5 ~~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~   74 (144)
T Consensus        56 i~aP~pv-----e~I~t~Md~~glt~~dLa~~iG-Sks~vS~iL~~rraLTle~ikkL~q~~gIpa~~lI  119 (120)
T COG5499          56 IAAPDPV-----EVIRTLMDQYGLTLADLANEIG-SKSRVSNILSGRRALTLEHIKKLHQRFGIPADVLI  119 (120)
T ss_pred             HHCCCHH-----HHHHHHHHHHCCCHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
T ss_conf             3168888-----9999999993871888899867-61889999732067669999999998695888753