HHsearch alignment for GI: 254780424 and conserved domain: COG5499
>COG5499 Predicted transcription regulator containing HTH domain [Transcription].
Probab=97.82 E-value=6.1e-05 Score=51.84 Aligned_cols=64 Identities=17% Similarity=0.311 Sum_probs=59.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 6689989999999999999981997999999872469999998528988358999999975499999950
Q gi|254780424|r 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 (144)
Q Consensus 5 ~~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~ 74 (144)
T Consensus 56 i~aP~pv-----e~I~t~Md~~glt~~dLa~~iG-Sks~vS~iL~~rraLTle~ikkL~q~~gIpa~~lI 119 (120)
T COG5499 56 IAAPDPV-----EVIRTLMDQYGLTLADLANEIG-SKSRVSNILSGRRALTLEHIKKLHQRFGIPADVLI 119 (120)
T ss_pred HHCCCHH-----HHHHHHHHHHCCCHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
T ss_conf 3168888-----9999999993871888899867-61889999732067669999999998695888753