HHsearch alignment for GI: 254780424 and conserved domain: PRK10344
>PRK10344 DNA-binding transcriptional regulator Nlp; Provisional.
Probab=94.11 E-value=0.16 Score=29.88 Aligned_cols=65 Identities=12% Similarity=0.016 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 998999999999999998199799999987246999999852898835899999997549999995067
Q gi|254780424|r 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144)
Q Consensus 8 ~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144)
T Consensus 3 ~~~~DWH~ADIiAAL-~KrG~sLa~Lsr~aGls~sTL~nAL~rp-wPKgE~i--IA~aLGv~P~eIWPS 67 (90)
T PRK10344 3 SNFIDWHPADIIAGL-RKKGTSMAAESRRNGLSSSTLANALSRP-WPKGEMI--IAKALGTDPWVIWPS 67 (90)
T ss_pred CCCCCCCHHHHHHHH-HHCCCCHHHHHHHCCCCHHHHHHHHCCC-CCHHHHH--HHHHHCCCHHHCCCC
T ss_conf 533668999999999-9868869999999099868899987489-9567999--999978798880975