HHsearch alignment for GI: 254780424 and conserved domain: PRK12529

>PRK12529 RNA polymerase sigma factor; Provisional.
Probab=91.07  E-value=0.24  Score=28.85  Aligned_cols=51  Identities=12%  Similarity=0.014  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHC---CC----CCCCHHHHHHHHHHCC
Q ss_conf             99999999999819-9799999987246999999852---89----8835899999997549
Q gi|254780424|r   14 NVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEK---GV----NRVGASRLQHISEVLE   67 (144)
Q Consensus        14 ~iG~rIr~~R~~~g-lTQ~eLA~~lGvs~s~is~~E~---G~----~~ps~~~L~~iA~~l~   67 (144)
T Consensus        22 h~~~L~~~l~~Rl~~~~~~-~AeDl-~QDvFlrl~~~~~~~~~~~i~~p-~a~L~rIA~Nl~   80 (178)
T PRK12529         22 NHAWLRNWLAYRLRSWGRG-VADDL-AHDIFLRILASRDGGQREAIRQP-RAYLARIANCVL   80 (178)
T ss_pred             HHHHHHHHHHHHHCCCCCC-CHHHH-HHHHHHHHHHHCCCCCCCHHHHH-HHHHHHHHHHHH
T ss_conf             9999999999982899835-46999-99999999973444564323348-999999999999