HHsearch alignment for GI: 254780424 and conserved domain: TIGR00721
>TIGR00721 tfx DNA-binding protein, Tfx family; InterPro: IPR004645 This is a family of Tfx DNA-binding proteins, which is restricted to the archaea. Homology among the members is strongest in the helix-turn-helix-containing N-terminal region. Tfx from Methanobacterium thermoautotrophicum is associated with the operon for molybdenum formyl-methanofuran dehydrogenase and binds a DNA sequence near its promoter.; GO: 0003677 DNA binding.
Probab=93.79 E-value=0.039 Score=33.90 Aligned_cols=48 Identities=21% Similarity=0.317 Sum_probs=32.7
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCC-HHHHHHHHHHCCCCHHH
Q ss_conf 81997999999872469999998528-98835-89999999754999999
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKG-VNRVG-ASRLQHISEVLESPISF 72 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G-~~~ps-~~~L~~iA~~l~v~~~~ 72 (144)
T Consensus 19 ~kGl~Q~eIAk~LkTtRaNvS~iEkrA~EnIeKa~NTl~~~~~i~spv~i 68 (142)
T TIGR00721 19 EKGLKQKEIAKILKTTRANVSIIEKRALENIEKAKNTLKLYKRIKSPVRI 68 (142)
T ss_pred HCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 33888788987726720137898887443237766389999974498258