HHsearch alignment for GI: 254780424 and conserved domain: pfam04814
>pfam04814 HNF-1_N Hepatocyte nuclear factor 1 (HNF-1), N terminus. This family consists of the N terminus of homeobox-containing transcription factor HNF-1. This region contains a dimerization sequence and an acidic region that may be involved in transcription activation. Mutations and the common Ala/Val 98 polymorphism in HNF-1 cause the type 3 form of maturity-onset diabetes of the young (MODY3).
Probab=92.65 E-value=0.35 Score=27.74 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9999999999981997999999872469999998528988358999
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L 59 (144)
T Consensus 115 ~v~~~Ik~~m~~h~ipQ~~vv~~TGlnQS~lSq~LnkGt~Mk~~kr 160 (177)
T pfam04814 115 RVAKMIKSYMQQHNIPQREVVDATGLNQSHLSQHLNKGTPMKTQKR 160 (177)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCCCHHHHH
T ss_conf 9999999999876884667876106559999999966884078999