HHsearch results for GI: 254780424 and protein with PDBid: 1u78_A

>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=91.13  E-value=0.2  Score=27.97  Aligned_cols=35  Identities=11%  Similarity=0.234  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             999999999981997999999872469999998528
Q gi|254780424|r   15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG   50 (144)
Q Consensus        15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G   50 (144)
                      .=.+|-.++ ..|+|+.++|..+|+|.++|++|-+-
T Consensus        11 ~R~~I~~l~-~~G~s~~~IAk~lg~s~stV~r~lk~   45 (141)
T 1u78_A           11 ERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKD   45 (141)
T ss_dssp             HHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred             HHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             999999999-97999999999989578999999997