HHsearch results for GI: 254780424 and protein with PDBid: 3ivp_A
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630}
Probab=99.73 E-value=3.5e-17 Score=128.86 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999999999819979999998724699999985289883589999999754999999506774431111101454211
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~~~~~~~~~~~~~~~ 93 (144)
+||++||.+|+.+||||++||..+|||.++|++||+|.+.|+.++|.+||++|+||++|||........+
T Consensus 12 ~ig~rlk~~R~~~gltq~elA~~lgvs~s~is~~E~G~~~ps~~~l~~ia~~l~v~~~~l~~~~~~~~~~---------- 81 (126)
T 3ivp_A 12 ALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKS---------- 81 (126)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHSCCCCCCCC----------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCC----------
T ss_conf 9999999999984999999967309998799999707779999999999999796899982888754353----------
Q ss_pred HHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2038678999999872899999999999999999999997539998732
Q gi|254780424|r 94 FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIEEECMV 142 (144)
Q Consensus 94 ~~~~~e~~~l~~~~~~l~~~~~r~~i~~l~~~l~~~e~~~~~~~ee~l~ 142 (144)
.....+...+..+++. ....+..+++.+...........|++..
T Consensus 82 ----~~~~~l~~~~~~l~~~-~~~~i~~i~~~~~~~~e~~e~~~e~l~~ 125 (126)
T 3ivp_A 82 ----TKRRQLENKIDNFTDA-DLVIMESVADGIVKSKEVGEMAGENLYF 125 (126)
T ss_dssp ----HHHHHHHHHTTTCCHH-HHHHHHHHHHHHHHHHHHHC--------
T ss_pred ----HHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf ----7999999999749999-9999999999999807777614651101