Query gi|254780424|ref|YP_003064837.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 144
No_of_seqs 111 out of 3925
Neff 8.2
Searched_HMMs 23785
Date Mon May 30 11:06:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780424.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ivp_A Putative transposon-rel 99.7 3.5E-17 1.5E-21 128.9 12.0 114 14-142 12-125 (126)
2 3op9_A PLI0006 protein; struct 99.7 5.4E-16 2.3E-20 121.3 11.6 66 14-79 9-74 (114)
3 2bnm_A Epoxidase; oxidoreducta 99.7 6.6E-17 2.8E-21 127.1 6.4 69 12-80 8-77 (198)
4 2ewt_A BLDD, putative DNA-bind 99.6 1.7E-16 7E-21 124.5 6.6 68 7-74 1-70 (71)
5 1y9q_A Transcriptional regulat 99.6 2.7E-16 1.1E-20 123.2 7.4 69 11-79 8-76 (192)
6 1b0n_A Protein (SINR protein); 99.6 3.5E-15 1.5E-19 116.1 11.5 66 14-79 1-67 (111)
7 2b5a_A C.BCLI; helix-turn-heli 99.6 2E-15 8.2E-20 117.7 8.1 70 8-77 2-73 (77)
8 2kpj_A SOS-response transcript 99.6 8.5E-16 3.6E-20 120.0 6.1 75 1-80 1-75 (94)
9 2r1j_L Repressor protein C2; p 99.6 3.3E-15 1.4E-19 116.3 7.8 64 14-77 5-68 (68)
10 1adr_A P22 C2 repressor; trans 99.6 3.6E-15 1.5E-19 116.0 8.1 66 14-79 5-70 (76)
11 3f52_A CLP gene regulator (CLG 99.6 4E-15 1.7E-19 115.7 8.1 67 10-76 24-90 (117)
12 2ict_A Antitoxin HIGA; helix-t 99.6 2E-15 8.2E-20 117.7 6.3 63 14-76 8-70 (94)
13 3b7h_A Prophage LP1 protein 11 99.6 5.5E-15 2.3E-19 114.8 8.1 65 14-78 7-72 (78)
14 2p5t_A Putative transcriptiona 99.6 3.5E-16 1.5E-20 122.5 1.2 65 14-78 1-65 (158)
15 1y7y_A C.AHDI; helix-turn-heli 99.6 5.2E-15 2.2E-19 115.0 7.1 61 14-74 13-73 (74)
16 3g5g_A Regulatory protein; tra 99.6 1.5E-14 6.3E-19 112.0 9.0 68 9-76 23-90 (99)
17 2jvl_A TRMBF1; coactivator, he 99.6 2.2E-15 9E-20 117.4 4.5 75 7-81 27-103 (107)
18 3mlf_A Transcriptional regulat 99.5 1.1E-15 4.8E-20 119.2 3.0 63 14-76 23-85 (111)
19 3cec_A Putative antidote prote 99.5 5.6E-15 2.4E-19 114.7 6.1 69 5-75 11-79 (104)
20 1r69_A Repressor protein CI; g 99.5 8E-15 3.3E-19 113.8 6.3 64 15-79 2-65 (69)
21 1zug_A Phage 434 CRO protein; 99.5 1.4E-14 5.8E-19 112.2 7.0 65 14-79 3-67 (71)
22 3omt_A Uncharacterized protein 99.5 3.6E-15 1.5E-19 116.0 3.8 63 15-77 9-71 (73)
23 3clc_A Regulatory protein; pro 99.5 3.5E-14 1.5E-18 109.7 8.7 70 7-76 4-73 (82)
24 2wiu_B HTH-type transcriptiona 99.5 5.4E-15 2.3E-19 114.8 4.4 74 1-76 1-74 (88)
25 3bs3_A Putative DNA-binding pr 99.5 2.8E-15 1.2E-19 116.6 2.9 66 13-78 9-74 (76)
26 3f6w_A XRE-family like protein 99.5 7.8E-15 3.3E-19 113.8 5.0 68 10-77 10-77 (83)
27 1utx_A CYLR2; DNA-binding prot 99.5 6.9E-15 2.9E-19 114.2 4.3 64 15-78 2-65 (66)
28 3eus_A DNA-binding protein; st 99.5 9.5E-14 4E-18 106.9 8.8 71 4-74 4-76 (86)
29 3kxa_A NGO0477 protein, putati 99.5 1.2E-14 5.2E-19 112.6 3.8 64 14-77 68-131 (141)
30 1x57_A Endothelial differentia 99.5 1.7E-14 7.2E-19 111.7 3.9 68 10-77 9-76 (91)
31 2l49_A C protein; P2 bacteriop 99.5 2.6E-14 1.1E-18 110.5 4.8 65 14-78 4-70 (99)
32 2ofy_A Putative XRE-family tra 99.5 1.8E-13 7.8E-18 105.0 8.8 67 13-81 15-82 (86)
33 1lmb_3 Protein (lambda repress 99.5 1.1E-13 4.8E-18 106.3 7.5 67 9-75 8-78 (92)
34 3kz3_A Repressor protein CI; f 99.5 8.9E-14 3.7E-18 107.1 6.3 64 13-76 11-74 (80)
35 2awi_A PRGX; repressor, pherom 99.4 5.4E-13 2.3E-17 102.0 6.8 65 15-80 4-68 (317)
36 3bdn_A Lambda repressor; repre 99.4 2.2E-13 9.2E-18 104.6 3.5 73 6-78 5-81 (236)
37 2ef8_A C.ECOT38IS, putative tr 99.4 4E-13 1.7E-17 102.9 4.8 62 13-74 9-70 (84)
38 2qfc_A PLCR protein; TPR, HTH, 99.3 3.1E-13 1.3E-17 103.6 3.1 65 13-78 4-68 (293)
39 2a6c_A Helix-turn-helix motif; 99.3 1E-12 4.2E-17 100.3 4.8 61 14-74 18-79 (83)
40 2eby_A Putative HTH-type trans 99.2 4E-12 1.7E-16 96.5 4.7 72 1-76 1-73 (113)
41 3fmy_A HTH-type transcriptiona 99.2 2.3E-12 9.6E-17 98.0 3.4 61 14-75 11-71 (73)
42 3g7d_A PHPD; non heme Fe(II) d 99.2 1.1E-11 4.8E-16 93.5 5.9 64 16-79 232-296 (443)
43 2fjr_A Repressor protein CI; g 99.2 5.3E-11 2.2E-15 89.3 6.8 64 17-81 9-73 (189)
44 2wus_R RODZ, putative uncharac 99.1 5.8E-11 2.4E-15 89.1 5.9 64 13-76 6-75 (112)
45 2ppx_A AGR_C_3184P, uncharacte 99.1 6.8E-11 2.9E-15 88.6 4.5 61 15-76 31-91 (99)
46 3o9x_A Uncharacterized HTH-typ 99.0 1.3E-10 5.3E-15 86.9 3.4 58 15-73 72-129 (133)
47 3fym_A Putative uncharacterize 98.9 2.1E-09 8.9E-14 79.0 5.8 64 14-77 3-72 (130)
48 2o38_A Hypothetical protein; a 98.9 2.9E-09 1.2E-13 78.2 6.0 63 13-75 39-102 (120)
49 2auw_A Hypothetical protein NE 98.8 9.3E-09 3.9E-13 74.9 5.7 47 17-63 93-139 (170)
50 1dw9_A Cyanate lyase; cyanate 98.3 1.9E-06 7.9E-11 60.1 7.1 74 1-75 1-74 (156)
51 1zx4_A P1 PARB, plasmid partit 96.9 0.0014 6E-08 41.7 5.3 47 3-52 3-49 (192)
52 3bd1_A CRO protein; transcript 96.7 0.0012 5.2E-08 42.1 3.9 48 28-76 12-61 (79)
53 2k9q_A Uncharacterized protein 96.2 0.019 7.9E-07 34.5 7.4 62 15-76 3-64 (77)
54 1neq_A DNA-binding protein NER 95.8 0.022 9.1E-07 34.1 6.5 57 18-77 13-69 (74)
55 1uxc_A FRUR (1-57), fructose r 95.6 0.0076 3.2E-07 37.0 3.4 45 28-72 1-51 (65)
56 3kjx_A Transcriptional regulat 95.6 0.012 4.9E-07 35.9 4.3 48 24-71 7-57 (344)
57 3mky_B Protein SOPB; partition 95.2 0.021 8.9E-07 34.2 4.6 42 6-49 22-64 (189)
58 2hsg_A Glucose-resistance amyl 95.0 0.029 1.2E-06 33.3 4.9 44 27-70 2-48 (332)
59 2w48_A Sorbitol operon regulat 94.8 0.02 8.6E-07 34.3 3.6 58 12-69 6-76 (315)
60 3h5t_A Transcriptional regulat 94.7 0.02 8.6E-07 34.3 3.4 50 23-72 5-58 (366)
61 1r71_A Transcriptional repress 94.6 0.044 1.8E-06 32.2 4.8 44 9-55 37-80 (178)
62 1zs4_A Regulatory protein CII; 94.5 0.026 1.1E-06 33.6 3.5 46 26-73 23-68 (83)
63 1jhf_A LEXA repressor; LEXA SO 94.4 0.032 1.3E-06 33.0 3.8 36 13-48 9-47 (202)
64 2h8r_A Hepatocyte nuclear fact 94.1 0.13 5.3E-06 29.2 6.4 45 14-58 31-75 (221)
65 1qpz_A PURA, protein (purine n 93.9 0.065 2.7E-06 31.0 4.6 44 29-72 2-48 (340)
66 2ox6_A Hypothetical protein SO 93.5 0.28 1.2E-05 27.0 7.3 67 8-80 7-83 (166)
67 3e3m_A Transcriptional regulat 92.8 0.016 6.6E-07 35.0 0.0 48 25-72 10-60 (355)
68 1jko_C HIN recombinase, DNA-in 92.7 0.077 3.2E-06 30.6 3.4 34 17-51 12-45 (52)
69 3h5o_A Transcriptional regulat 92.5 0.019 7.9E-07 34.5 0.0 49 25-73 2-53 (339)
70 1s4k_A Putative cytoplasmic pr 92.4 0.26 1.1E-05 27.2 5.7 48 17-64 6-55 (120)
71 1jhg_A Trp operon repressor; c 92.2 0.16 6.8E-06 28.5 4.5 38 14-51 43-82 (101)
72 1rzs_A Antirepressor, regulato 91.9 0.16 6.6E-06 28.6 4.1 38 26-67 10-47 (61)
73 3frw_A Putative Trp repressor 91.7 0.22 9.2E-06 27.7 4.8 37 14-50 44-81 (107)
74 3bil_A Probable LACI-family tr 91.7 0.026 1.1E-06 33.6 0.0 48 26-73 7-57 (348)
75 1vz0_A PARB, chromosome partit 91.3 0.27 1.1E-05 27.1 4.8 59 7-70 117-175 (230)
76 2r0q_C Putative transposon TN5 91.2 0.52 2.2E-05 25.3 6.2 43 8-51 157-199 (209)
77 1u78_A TC3 transposase, transp 91.1 0.2 8.3E-06 28.0 4.0 35 15-50 11-45 (141)
78 1jye_A Lactose operon represso 91.0 0.034 1.4E-06 32.9 0.0 48 26-73 2-52 (349)
79 3kor_A Possible Trp repressor; 90.7 0.29 1.2E-05 26.9 4.6 37 14-50 61-98 (119)
80 3dbi_A Sugar-binding transcrip 90.7 0.038 1.6E-06 32.6 0.0 46 28-73 4-52 (338)
81 2jn6_A Protein CGL2762, transp 90.4 0.12 5.1E-06 29.3 2.4 32 18-49 11-45 (97)
82 2csf_A DNA-binding protein SAT 90.0 0.63 2.6E-05 24.7 5.8 43 14-56 21-64 (101)
83 3ctp_A Periplasmic binding pro 89.6 0.053 2.2E-06 31.6 0.0 45 29-73 4-51 (330)
84 1z6r_A MLC protein; transcript 89.5 0.34 1.4E-05 26.4 4.1 35 13-47 16-50 (406)
85 3k2z_A LEXA repressor; winged 89.2 0.6 2.5E-05 24.9 5.2 34 13-46 8-43 (196)
86 3iwf_A Transcription regulator 89.0 0.53 2.2E-05 25.2 4.7 56 10-65 17-74 (107)
87 2ao9_A Phage protein; structur 88.7 0.22 9.4E-06 27.6 2.7 30 26-55 47-77 (155)
88 1nr3_A MTH0916, DNA-binding pr 88.6 0.0085 3.6E-07 36.7 -4.6 46 25-70 3-50 (122)
89 1hlv_A CENP-B, major centromer 88.5 0.73 3.1E-05 24.3 5.2 36 17-52 15-50 (131)
90 1k78_A Paired box protein PAX5 88.2 0.67 2.8E-05 24.6 4.9 40 6-48 30-69 (149)
91 3jvd_A Transcriptional regulat 88.2 0.076 3.2E-06 30.6 0.0 48 26-73 5-55 (333)
92 2o20_A Catabolite control prot 88.1 0.077 3.2E-06 30.6 0.0 48 26-73 4-54 (332)
93 1rp3_A RNA polymerase sigma fa 88.1 0.4 1.7E-05 26.0 3.7 20 29-48 117-136 (239)
94 1z05_A Transcriptional regulat 88.0 0.77 3.3E-05 24.2 5.1 34 14-47 40-73 (429)
95 1ic8_A Hepatocyte nuclear fact 87.3 0.91 3.8E-05 23.7 5.1 44 15-58 31-74 (194)
96 2d5v_A Hepatocyte nuclear fact 86.7 0.68 2.9E-05 24.5 4.2 60 14-73 8-73 (164)
97 2o0m_A Transcriptional regulat 86.1 0.12 4.9E-06 29.4 0.0 49 7-55 12-67 (345)
98 2k27_A Paired box protein PAX- 85.3 0.77 3.3E-05 24.2 3.9 43 6-51 23-65 (159)
99 2wte_A CSA3; antiviral protein 85.0 0.72 3E-05 24.4 3.6 30 17-46 156-185 (244)
100 3cta_A Riboflavin kinase; stru 84.4 1 4.4E-05 23.3 4.2 34 15-48 9-48 (230)
101 2cyy_A Putative HTH-type trans 84.3 1.1 4.5E-05 23.3 4.2 36 8-46 5-40 (151)
102 2elh_A CG11849-PA, LD40883P; s 84.2 0.73 3.1E-05 24.3 3.3 28 24-51 35-62 (87)
103 1gdt_A GD resolvase, protein ( 83.9 1.1 4.7E-05 23.1 4.2 11 119-129 107-117 (183)
104 1wiz_A DNA-binding protein SAT 83.1 2.3 9.8E-05 21.1 6.6 39 14-52 21-60 (101)
105 2o3f_A Putative HTH-type trans 82.4 1.4 5.8E-05 22.5 4.2 55 10-64 21-77 (111)
106 1e3o_C Octamer-binding transcr 82.4 2.5 0.0001 20.9 6.6 47 8-54 4-57 (160)
107 1pdn_C Protein (PRD paired); p 82.4 0.87 3.6E-05 23.8 3.1 39 7-48 16-54 (128)
108 2p7v_B Sigma-70, RNA polymeras 82.3 0.69 2.9E-05 24.5 2.6 24 26-49 24-47 (68)
109 2dbb_A Putative HTH-type trans 82.2 1.6 6.6E-05 22.2 4.4 38 6-46 5-42 (151)
110 1xwr_A Regulatory protein CII; 81.9 0.3 1.2E-05 26.8 0.6 43 27-71 23-65 (97)
111 2pn6_A ST1022, 150AA long hypo 81.3 1.1 4.5E-05 23.3 3.3 35 9-46 2-36 (150)
112 3bdd_A Regulatory protein MARR 81.2 1.2 5.2E-05 22.9 3.6 29 19-47 37-65 (142)
113 3d1n_I POU domain, class 6, tr 81.1 2.7 0.00011 20.7 5.3 41 15-55 9-55 (151)
114 1x2l_A CUT-like 2, homeobox pr 80.9 2.1 8.9E-05 21.4 4.7 39 13-51 20-59 (101)
115 2o4a_A DNA-binding protein SAT 80.8 2.8 0.00012 20.6 5.6 39 14-52 11-50 (93)
116 2ia0_A Putative HTH-type trans 80.8 1.9 7.8E-05 21.7 4.4 36 8-46 15-50 (171)
117 2pij_A Prophage PFL 6 CRO; tra 80.5 0.95 4E-05 23.6 2.8 27 29-55 15-41 (67)
118 2e1c_A Putative HTH-type trans 80.3 2 8.2E-05 21.6 4.4 36 8-46 25-60 (171)
119 3iwz_A CAP-like, catabolite ac 80.0 0.88 3.7E-05 23.8 2.5 19 28-46 188-206 (230)
120 2hoe_A N-acetylglucosamine kin 79.9 1.4 5.7E-05 22.6 3.4 29 18-47 25-53 (380)
121 2rdp_A Putative transcriptiona 79.5 1.5 6.3E-05 22.3 3.6 24 104-128 122-145 (150)
122 1l0o_C Sigma factor; bergerat 79.4 0.31 1.3E-05 26.7 0.0 24 26-49 129-152 (243)
123 1ft9_A Carbon monoxide oxidati 79.2 1 4.2E-05 23.5 2.6 22 26-47 162-183 (222)
124 3nrv_A Putative transcriptiona 79.0 1.3 5.4E-05 22.8 3.1 30 18-47 45-74 (148)
125 2eth_A Transcriptional regulat 78.9 1.5 6.4E-05 22.3 3.4 29 19-47 50-78 (154)
126 3bpv_A Transcriptional regulat 78.9 1.5 6.2E-05 22.4 3.3 31 17-47 33-63 (138)
127 2w25_A Probable transcriptiona 78.7 1.4 5.9E-05 22.5 3.2 35 9-46 6-40 (150)
128 1s7o_A Hypothetical UPF0122 pr 78.6 2.2 9.4E-05 21.2 4.2 31 18-48 29-59 (113)
129 2hr3_A Probable transcriptiona 78.6 3.1 0.00013 20.3 5.0 19 28-46 51-69 (147)
130 3g3z_A NMB1585, transcriptiona 78.6 1.7 7E-05 22.0 3.6 13 61-73 50-62 (145)
131 3kcc_A Catabolite gene activat 78.6 1 4.4E-05 23.3 2.5 19 28-46 218-236 (260)
132 1ku3_A Sigma factor SIGA; heli 78.3 1.8 7.7E-05 21.8 3.7 34 17-50 16-53 (73)
133 2zdb_A Transcriptional regulat 78.1 0.87 3.7E-05 23.8 2.0 21 27-47 139-159 (195)
134 1ub9_A Hypothetical protein PH 78.0 1.7 7.1E-05 22.0 3.4 29 19-47 22-50 (100)
135 3keo_A Redox-sensing transcrip 78.0 2.2 9.2E-05 21.3 4.0 72 1-72 1-85 (212)
136 3ech_A MEXR, multidrug resista 77.9 1.3 5.4E-05 22.8 2.8 27 20-46 44-70 (142)
137 2jml_A DNA binding domain/tran 77.9 0.84 3.5E-05 23.9 1.9 24 26-49 4-27 (81)
138 1j9i_A GPNU1 DBD;, terminase s 77.9 0.61 2.6E-05 24.8 1.1 24 27-50 2-25 (68)
139 3hug_A RNA polymerase sigma fa 77.8 2.1 8.9E-05 21.4 3.9 33 17-49 43-75 (92)
140 2d1h_A ST1889, 109AA long hypo 77.7 1.4 6E-05 22.4 3.0 29 19-47 27-56 (109)
141 1jgs_A Multiple antibiotic res 77.7 1.8 7.7E-05 21.8 3.5 30 18-47 39-68 (138)
142 2cfx_A HTH-type transcriptiona 77.5 1.6 6.7E-05 22.2 3.2 35 9-46 4-38 (144)
143 3la7_A Global nitrogen regulat 77.2 1.2 5E-05 22.9 2.5 21 27-47 193-213 (243)
144 3i4p_A Transcriptional regulat 77.0 1 4.3E-05 23.4 2.1 35 9-46 2-36 (162)
145 2p5v_A Transcriptional regulat 76.9 1.7 7.1E-05 22.0 3.2 35 9-46 9-43 (162)
146 2ovg_A Phage lambda CRO; trans 76.9 1.5 6.3E-05 22.3 2.9 35 19-55 7-41 (66)
147 2o8x_A Probable RNA polymerase 76.8 2.4 1E-04 21.0 3.9 31 17-47 21-51 (70)
148 2pex_A Transcriptional regulat 76.8 1.3 5.4E-05 22.8 2.6 30 18-47 52-81 (153)
149 2a61_A Transcriptional regulat 76.8 2.1 8.7E-05 21.4 3.6 22 25-46 45-66 (145)
150 2gau_A Transcriptional regulat 76.3 1.2 5.1E-05 22.9 2.3 21 27-47 180-200 (232)
151 1wh8_A CUT-like 2, homeobox pr 76.2 3.5 0.00015 19.9 4.7 38 13-50 30-68 (111)
152 1j5y_A Transcriptional regulat 76.2 1.6 6.7E-05 22.2 2.9 28 20-47 28-56 (187)
153 1wh6_A CUT-like 2, homeobox pr 76.2 3.1 0.00013 20.3 4.3 55 13-67 20-81 (101)
154 2qww_A Transcriptional regulat 76.2 1.4 5.8E-05 22.5 2.6 36 33-73 33-72 (154)
155 1i1g_A Transcriptional regulat 76.1 1.8 7.7E-05 21.8 3.2 35 9-46 3-37 (141)
156 3nqo_A MARR-family transcripti 75.7 1.3 5.5E-05 22.7 2.3 22 26-47 56-77 (189)
157 3hef_A Gene 1 protein; bacteri 75.5 1.1 4.7E-05 23.1 1.9 49 14-65 19-68 (143)
158 2nnn_A Probable transcriptiona 75.4 2.1 8.8E-05 21.4 3.3 13 61-73 57-69 (140)
159 3dv8_A Transcriptional regulat 75.2 4.1 0.00017 19.5 5.1 21 27-47 169-189 (220)
160 3cjn_A Transcriptional regulat 75.1 1.5 6.4E-05 22.3 2.6 29 19-47 58-86 (162)
161 1z91_A Organic hydroperoxide r 75.1 1.2 5E-05 23.0 2.0 29 19-47 46-74 (147)
162 1xsv_A Hypothetical UPF0122 pr 74.8 2.4 0.0001 21.0 3.5 32 17-48 31-62 (113)
163 2cg4_A Regulatory protein ASNC 74.7 4.1 0.00017 19.5 4.7 38 6-46 4-41 (152)
164 3frq_A Repressor protein MPHR( 74.7 1.8 7.6E-05 21.8 2.8 43 23-65 24-66 (195)
165 3e97_A Transcriptional regulat 74.6 1.6 6.5E-05 22.2 2.5 20 27-46 175-194 (231)
166 1sfx_A Conserved hypothetical 74.4 2.6 0.00011 20.8 3.6 29 19-47 26-54 (109)
167 2fa5_A Transcriptional regulat 74.4 2.4 9.9E-05 21.1 3.4 42 31-73 39-80 (162)
168 3bj6_A Transcriptional regulat 74.2 1.7 7E-05 22.0 2.6 12 60-71 58-69 (152)
169 1tlh_B Sigma-70, RNA polymeras 74.2 2 8.5E-05 21.5 3.0 24 27-50 38-61 (81)
170 1ku9_A Hypothetical protein MJ 74.1 1.2 5.1E-05 22.9 1.8 22 26-47 40-61 (152)
171 3oop_A LIN2960 protein; protei 74.1 2 8.6E-05 21.5 3.0 32 16-47 40-71 (143)
172 3e6c_C CPRK, cyclic nucleotide 74.0 1.6 6.9E-05 22.1 2.5 22 26-47 176-197 (250)
173 3eco_A MEPR; mutlidrug efflux 73.9 1.2 5.1E-05 22.9 1.8 23 25-47 45-67 (139)
174 1tty_A Sigma-A, RNA polymerase 73.9 2.8 0.00012 20.6 3.7 26 25-50 36-61 (87)
175 2zhg_A Redox-sensitive transcr 73.7 1.5 6.2E-05 22.4 2.2 50 24-73 8-73 (154)
176 2fmy_A COOA, carbon monoxide o 73.6 1.8 7.5E-05 21.8 2.6 22 26-47 166-187 (220)
177 2xsd_C POU domain, class 3, tr 73.3 4.5 0.00019 19.2 6.2 55 7-63 9-70 (164)
178 2nyx_A Probable transcriptiona 73.1 2.3 9.5E-05 21.2 3.0 58 8-70 11-73 (168)
179 1s3j_A YUSO protein; structura 72.8 1.9 8E-05 21.7 2.6 25 104-129 117-141 (155)
180 2oz6_A Virulence factor regula 72.8 1.8 7.8E-05 21.7 2.5 19 28-46 165-183 (207)
181 3dn7_A Cyclic nucleotide bindi 72.5 0.61 2.6E-05 24.8 0.0 23 26-48 167-189 (194)
182 1r8d_A Transcription activator 72.2 1.8 7.4E-05 21.9 2.3 47 27-73 2-65 (109)
183 3bro_A Transcriptional regulat 71.8 3.9 0.00016 19.7 4.0 63 8-73 1-67 (141)
184 1umq_A Photosynthetic apparatu 71.7 3.9 0.00017 19.6 4.0 38 11-48 38-75 (81)
185 3k0l_A Repressor protein; heli 71.5 1.7 7.1E-05 22.0 2.1 11 59-69 63-73 (162)
186 3fx3_A Cyclic nucleotide-bindi 71.2 1.5 6.1E-05 22.4 1.7 22 26-47 177-198 (237)
187 3jw4_A Transcriptional regulat 70.5 1.2 5.1E-05 22.9 1.2 36 9-44 9-44 (148)
188 2fbh_A Transcriptional regulat 70.2 2.4 9.9E-05 21.1 2.6 23 105-128 119-141 (146)
189 3dkw_A DNR protein; CRP-FNR, H 69.9 1.6 6.9E-05 22.1 1.7 19 28-46 179-197 (227)
190 3ezq_A Tumor necrosis factor r 69.7 5.2 0.00022 18.9 4.2 45 9-53 1-46 (115)
191 3f3x_A Transcriptional regulat 69.6 2.8 0.00012 20.5 2.9 39 30-73 26-67 (144)
192 1yse_A DNA-binding protein SAT 69.6 3.3 0.00014 20.1 3.3 58 14-71 25-89 (141)
193 2k9s_A Arabinose operon regula 69.6 3.7 0.00016 19.8 3.5 38 14-51 4-44 (107)
194 3b73_A PHIH1 repressor-like pr 69.6 2.2 9.4E-05 21.2 2.4 36 9-47 12-49 (111)
195 1l9z_H Sigma factor SIGA; heli 69.4 2.3 9.5E-05 21.2 2.4 16 28-43 301-316 (438)
196 1zyb_A Transcription regulator 69.3 2.5 0.0001 20.9 2.5 19 28-46 187-205 (232)
197 2kfs_A Conserved hypothetical 68.8 2.2 9.4E-05 21.2 2.2 43 28-75 32-74 (148)
198 3knw_A Putative transcriptiona 68.7 5.7 0.00024 18.6 6.1 51 26-76 33-83 (212)
199 3gp4_A Transcriptional regulat 68.5 2.4 0.0001 21.0 2.4 47 27-73 2-65 (142)
200 2zcx_A SCO7815, TETR-family tr 68.1 5.9 0.00025 18.5 5.9 38 25-62 41-78 (231)
201 1lj9_A Transcriptional regulat 68.0 2.8 0.00012 20.6 2.6 26 105-131 110-135 (144)
202 2hku_A A putative transcriptio 68.0 5.9 0.00025 18.5 6.4 41 26-66 38-78 (215)
203 3npi_A TETR family regulatory 67.9 4 0.00017 19.6 3.4 61 17-77 28-88 (251)
204 3d0s_A Transcriptional regulat 67.9 2.7 0.00012 20.6 2.5 22 26-47 176-197 (227)
205 1fse_A GERE; helix-turn-helix 67.8 2.9 0.00012 20.4 2.7 26 24-49 23-48 (74)
206 1ngr_A P75 low affinity neurot 67.6 3.2 0.00013 20.2 2.8 35 27-62 21-55 (85)
207 2krf_A Transcriptional regulat 67.6 5.4 0.00023 18.8 4.0 27 24-50 24-50 (73)
208 2zcw_A TTHA1359, transcription 67.5 2.8 0.00012 20.6 2.5 22 26-47 145-166 (202)
209 1u8b_A ADA polyprotein; protei 67.2 2.8 0.00012 20.6 2.5 36 15-50 78-116 (133)
210 1q06_A Transcriptional regulat 67.0 2.8 0.00012 20.6 2.4 46 28-73 1-63 (135)
211 3e7l_A Transcriptional regulat 66.8 5.8 0.00024 18.6 4.0 34 14-47 19-52 (63)
212 2yve_A Transcriptional regulat 66.8 6.3 0.00026 18.3 5.1 51 25-75 22-72 (185)
213 1x3u_A Transcriptional regulat 66.7 2.9 0.00012 20.5 2.5 27 23-49 27-53 (79)
214 2fxa_A Protease production reg 66.7 3.4 0.00014 20.1 2.8 30 18-47 53-82 (207)
215 2vz4_A Tipal, HTH-type transcr 66.6 2.6 0.00011 20.8 2.2 46 28-73 2-64 (108)
216 3lwj_A Putative TETR-family tr 66.3 6.4 0.00027 18.3 6.9 42 26-67 31-72 (202)
217 1eto_A FIS, factor for inversi 66.2 6.1 0.00026 18.4 4.0 29 18-46 62-90 (98)
218 3h0d_A CTSR; protein DNA compl 65.9 2.8 0.00012 20.6 2.3 43 8-51 1-48 (155)
219 3deu_A Transcriptional regulat 65.8 2.3 9.7E-05 21.1 1.8 24 105-129 135-158 (166)
220 3mop_A Myeloid differentiation 65.5 3.7 0.00016 19.8 2.8 43 30-73 29-71 (110)
221 1pb6_A Hypothetical transcript 65.4 6.6 0.00028 18.2 5.7 46 26-71 37-82 (212)
222 2w7n_A TRFB transcriptional re 65.1 3.5 0.00015 19.9 2.6 27 23-49 30-56 (101)
223 3fm5_A Transcriptional regulat 64.8 2.6 0.00011 20.8 1.9 15 59-73 57-71 (150)
224 2jpc_A SSRB; DNA binding prote 64.1 2.6 0.00011 20.8 1.8 27 24-50 10-36 (61)
225 3cdh_A Transcriptional regulat 63.9 2.3 9.5E-05 21.2 1.5 63 10-73 12-74 (155)
226 3kp7_A Transcriptional regulat 63.8 2.8 0.00012 20.6 1.9 15 59-73 54-68 (151)
227 2rn7_A IS629 ORFA; helix, all 63.8 2.9 0.00012 20.5 2.0 24 26-49 29-52 (108)
228 2fbi_A Probable transcriptiona 63.7 4.2 0.00018 19.5 2.8 48 20-73 16-67 (142)
229 3lsj_A DEST; transcriptional r 63.3 7.2 0.0003 17.9 4.0 47 19-65 21-70 (220)
230 3bja_A Transcriptional regulat 62.6 1.5 6.1E-05 22.4 0.3 20 106-126 115-134 (139)
231 1or7_A Sigma-24, RNA polymeras 62.2 6.9 0.00029 18.1 3.7 10 103-112 134-143 (194)
232 1u3e_M HNH homing endonuclease 62.1 4.7 0.0002 19.2 2.8 27 27-53 135-161 (174)
233 1p4w_A RCSB; solution structur 62.0 4.8 0.0002 19.1 2.9 45 24-68 46-94 (99)
234 3hh0_A Transcriptional regulat 61.9 3.9 0.00016 19.7 2.4 49 25-73 2-67 (146)
235 1ui5_A A-factor receptor homol 61.7 7.8 0.00033 17.7 4.4 40 26-65 28-67 (215)
236 3kz9_A SMCR; transcriptional r 61.6 7.8 0.00033 17.7 5.3 42 26-67 36-77 (206)
237 1je8_A Nitrate/nitrite respons 61.5 4.6 0.00019 19.2 2.7 27 24-50 33-59 (82)
238 2zkz_A Transcriptional repress 61.5 5.1 0.00021 18.9 2.9 24 24-47 38-61 (99)
239 3c57_A Two component transcrip 61.2 5.3 0.00022 18.8 3.0 26 24-49 39-64 (95)
240 3gpv_A Transcriptional regulat 61.1 3.4 0.00014 20.0 2.0 48 26-73 15-79 (148)
241 3e6m_A MARR family transcripti 60.8 4.1 0.00017 19.5 2.3 16 58-73 69-84 (161)
242 3klo_A Transcriptional regulat 60.7 4.3 0.00018 19.4 2.4 21 26-46 173-193 (225)
243 3g1l_A Transcriptional regulat 60.4 8.2 0.00034 17.6 6.4 48 27-74 64-111 (256)
244 3f1b_A TETR-like transcription 60.1 3.2 0.00013 20.2 1.7 41 26-66 33-73 (203)
245 2gxg_A 146AA long hypothetical 59.8 4.1 0.00017 19.6 2.2 58 14-73 10-67 (146)
246 1wud_A ATP-dependent DNA helic 59.7 8.4 0.00035 17.5 5.2 57 4-76 4-60 (89)
247 2g7u_A Transcriptional regulat 59.4 4.9 0.00021 19.0 2.5 25 25-49 27-51 (257)
248 2a6h_F RNA polymerase sigma fa 59.0 3 0.00012 20.4 1.4 15 28-42 286-300 (423)
249 2dg6_A Putative transcriptiona 58.7 4.9 0.00021 19.0 2.4 27 28-54 1-28 (222)
250 2o7t_A Transcriptional regulat 58.4 4.7 0.0002 19.1 2.3 40 25-64 26-65 (199)
251 3hsr_A HTH-type transcriptiona 58.3 1.9 7.9E-05 21.7 0.2 16 58-73 52-67 (140)
252 1d2z_A Death domain of pelle; 58.2 8.9 0.00037 17.4 3.8 47 29-75 33-82 (108)
253 3cdl_A Transcriptional regulat 58.1 4 0.00017 19.6 1.9 44 25-68 27-70 (203)
254 2rnj_A Response regulator prot 58.0 4.8 0.0002 19.1 2.3 27 23-49 40-66 (91)
255 2frh_A SARA, staphylococcal ac 57.4 5.9 0.00025 18.5 2.7 44 20-73 27-70 (127)
256 3cuo_A Uncharacterized HTH-typ 57.0 3.1 0.00013 20.3 1.2 30 18-47 26-58 (99)
257 2f07_A YVDT; helix-turn-helix, 57.0 9.3 0.00039 17.2 4.0 41 26-66 29-69 (197)
258 1l3l_A Transcriptional activat 56.4 9.5 0.0004 17.2 3.9 13 16-28 22-34 (234)
259 1vi0_A Transcriptional regulat 56.0 9.7 0.00041 17.1 9.4 52 15-66 14-67 (206)
260 2fq4_A Transcriptional regulat 55.7 6.4 0.00027 18.3 2.6 29 26-54 31-59 (192)
261 1mkm_A ICLR transcriptional re 54.9 5.5 0.00023 18.7 2.2 23 25-47 21-43 (249)
262 2wui_A MEXZ, transcriptional r 54.8 6.9 0.00029 18.1 2.6 41 26-66 30-70 (210)
263 2d6y_A Putative TETR family re 54.7 6.1 0.00026 18.4 2.4 39 23-61 24-62 (202)
264 3oio_A Transcriptional regulat 54.7 10 0.00042 17.0 3.5 43 15-57 9-53 (113)
265 2x48_A CAG38821; archeal virus 54.6 7.5 0.00032 17.8 2.8 26 24-49 28-53 (55)
266 1o5l_A Transcriptional regulat 54.4 2.1 9E-05 21.3 0.0 14 29-42 166-179 (213)
267 1z4h_A TORI, TOR inhibition pr 54.3 2.9 0.00012 20.5 0.6 28 28-55 11-38 (66)
268 3cwr_A Transcriptional regulat 54.3 6.1 0.00026 18.4 2.3 36 26-61 36-71 (208)
269 1t56_A EThr repressor; helix-t 54.2 10 0.00043 16.9 6.2 45 26-70 43-87 (216)
270 2bv6_A MGRA, HTH-type transcri 54.1 2.5 0.00011 20.9 0.3 12 58-69 53-64 (142)
271 3boq_A Transcriptional regulat 54.1 2 8.5E-05 21.5 -0.2 36 31-69 37-75 (160)
272 3bjb_A Probable transcriptiona 54.0 5.6 0.00024 18.7 2.1 47 26-72 41-87 (207)
273 1g2h_A Transcriptional regulat 53.8 9.4 0.0004 17.2 3.2 29 18-47 25-53 (61)
274 2pz9_A Putative regulatory pro 53.4 4.9 0.00021 19.0 1.7 45 18-62 41-85 (226)
275 1ntc_A Protein (nitrogen regul 53.1 8 0.00033 17.7 2.7 29 18-46 55-83 (91)
276 2oi8_A Putative regulatory pro 53.1 4.6 0.00019 19.2 1.5 36 25-60 34-69 (216)
277 2opt_A Actii protein; helical 53.0 6.5 0.00027 18.2 2.3 37 25-61 24-60 (234)
278 2vke_A Tetracycline repressor 52.8 6.6 0.00028 18.2 2.3 38 25-62 21-58 (207)
279 3bqy_A Putative TETR family tr 52.6 4.3 0.00018 19.4 1.3 47 19-65 14-60 (209)
280 2dg7_A Putative transcriptiona 52.2 6.2 0.00026 18.4 2.1 48 8-55 6-55 (195)
281 2guh_A Putative TETR-family tr 52.1 7 0.00029 18.0 2.3 29 26-54 58-86 (214)
282 2ibd_A Possible transcriptiona 52.0 5.9 0.00025 18.5 1.9 48 26-73 33-80 (204)
283 2gen_A Probable transcriptiona 51.7 6.7 0.00028 18.2 2.2 44 22-65 22-65 (197)
284 3lsg_A Two-component response 51.7 8.6 0.00036 17.5 2.8 26 26-51 18-43 (103)
285 2o0y_A Transcriptional regulat 51.7 6.8 0.00028 18.1 2.2 24 25-48 36-59 (260)
286 3lap_A Arginine repressor; arg 51.7 11 0.00048 16.7 4.1 35 11-47 19-59 (170)
287 3b81_A Transcriptional regulat 51.5 5.6 0.00024 18.6 1.8 39 26-64 30-68 (203)
288 2hxi_A Putative transcriptiona 51.3 7.7 0.00032 17.8 2.5 29 25-53 47-75 (241)
289 2fbk_A Transcriptional regulat 51.2 1.3 5.6E-05 22.6 -1.5 21 106-127 154-174 (181)
290 3gzi_A Transcriptional regulat 50.9 6.3 0.00026 18.3 1.9 40 26-65 36-75 (218)
291 3f0c_A TETR-molecule A, transc 50.9 5.2 0.00022 18.9 1.5 49 26-74 30-78 (216)
292 2zb9_A Putative transcriptiona 50.8 7 0.0003 18.0 2.2 34 26-59 42-75 (214)
293 3g7r_A Putative transcriptiona 50.5 4.1 0.00017 19.5 0.9 41 26-66 54-94 (221)
294 3nnr_A Transcriptional regulat 50.4 7.6 0.00032 17.8 2.3 31 25-55 23-53 (228)
295 2bgc_A PRFA; bacterial infecti 50.3 8.1 0.00034 17.6 2.4 20 27-46 169-189 (238)
296 2hyt_A TETR-family transcripti 50.3 12 0.0005 16.6 5.0 43 24-66 29-71 (197)
297 3bni_A Putative TETR-family tr 50.3 8.8 0.00037 17.4 2.6 35 26-60 62-96 (229)
298 3dpj_A Transcription regulator 50.3 7.1 0.0003 18.0 2.1 47 18-64 17-65 (194)
299 2of7_A Putative TETR-family tr 50.2 9 0.00038 17.3 2.6 28 25-52 66-93 (260)
300 2wv0_A YVOA, HTH-type transcri 50.2 12 0.0005 16.5 5.2 43 4-46 4-53 (243)
301 3obc_A Pyrophosphatase; dimeri 50.0 12 0.00051 16.5 6.1 25 14-38 15-43 (118)
302 2fbq_A Probable transcriptiona 49.9 9.1 0.00038 17.3 2.6 38 26-63 26-63 (235)
303 3bqz_B HTH-type transcriptiona 49.9 9.3 0.00039 17.2 2.7 41 24-64 19-59 (194)
304 3mvp_A TETR/ACRR transcription 49.6 6.5 0.00027 18.2 1.9 39 26-64 45-83 (217)
305 2g7l_A TETR-family transcripti 49.5 4.5 0.00019 19.2 1.0 34 25-58 37-70 (243)
306 3bru_A Regulatory protein, TET 49.5 9.2 0.00039 17.3 2.6 38 26-63 49-86 (222)
307 1rkt_A Protein YFIR; transcrip 49.4 6.5 0.00027 18.3 1.8 38 26-63 31-68 (205)
308 2oer_A Probable transcriptiona 49.3 12 0.00052 16.5 4.2 42 26-67 43-84 (214)
309 3crj_A Transcription regulator 49.0 12 0.00052 16.4 4.5 40 25-64 32-71 (199)
310 2q0o_A Probable transcriptiona 48.8 11 0.00045 16.8 2.9 11 58-68 102-112 (236)
311 2v57_A TETR family transcripti 48.5 9.9 0.00041 17.1 2.6 54 19-72 24-77 (190)
312 1z0x_A Transcriptional regulat 48.4 6.4 0.00027 18.3 1.6 54 15-68 11-67 (220)
313 3c2b_A Transcriptional regulat 48.2 7.3 0.00031 17.9 1.9 43 24-66 32-74 (221)
314 3cjd_A Transcriptional regulat 48.2 7.1 0.0003 18.0 1.9 40 26-65 31-70 (198)
315 2qib_A TETR-family transcripti 48.2 7.1 0.0003 18.0 1.9 41 26-66 32-72 (231)
316 3o60_A LIN0861 protein; PSI, M 48.0 11 0.00047 16.7 2.8 52 15-66 24-79 (185)
317 2g3b_A Putative TETR-family tr 48.0 7.4 0.00031 17.9 1.9 38 23-60 19-56 (208)
318 3ljl_A Transcriptional regulat 47.8 7.4 0.00031 17.9 1.9 37 23-59 30-66 (156)
319 2di3_A Bacterial regulatory pr 47.8 6.9 0.00029 18.1 1.8 32 14-45 12-46 (239)
320 2rae_A Transcriptional regulat 47.7 11 0.00045 16.9 2.7 40 26-65 36-75 (207)
321 3mn2_A Probable ARAC family tr 47.7 13 0.00055 16.3 3.6 33 25-57 16-48 (108)
322 2g7g_A RHA04620, putative tran 47.7 6.4 0.00027 18.3 1.6 43 17-59 19-61 (213)
323 3mkl_A HTH-type transcriptiona 47.6 9.4 0.0004 17.2 2.4 26 25-50 21-46 (120)
324 2jj7_A Hemolysin II regulatory 47.5 5.4 0.00023 18.8 1.2 43 22-64 22-64 (186)
325 3hta_A EBRA repressor; TETR fa 46.7 6 0.00025 18.5 1.3 41 26-66 47-87 (217)
326 2ia2_A Putative transcriptiona 46.6 7.5 0.00032 17.8 1.8 35 15-49 20-58 (265)
327 2jsc_A Transcriptional regulat 46.6 6.4 0.00027 18.3 1.4 29 19-48 27-55 (118)
328 2ras_A Transcriptional regulat 46.5 6.1 0.00026 18.4 1.3 30 25-54 29-58 (212)
329 1y0u_A Arsenical resistance op 46.3 14 0.00058 16.2 4.2 23 25-47 41-63 (96)
330 1u2w_A CADC repressor, cadmium 46.3 10 0.00043 17.0 2.4 20 27-46 56-75 (122)
331 3he0_A Transcriptional regulat 46.2 14 0.00058 16.2 5.2 35 25-59 29-63 (196)
332 3jsj_A Putative TETR-family tr 46.1 14 0.00058 16.1 5.3 63 2-64 2-65 (190)
333 2xdn_A HTH-type transcriptiona 45.8 6.2 0.00026 18.4 1.3 39 26-64 30-68 (210)
334 2gfn_A HTH-type transcriptiona 45.7 6.2 0.00026 18.4 1.2 43 24-66 26-68 (209)
335 1bia_A BIRA bifunctional prote 44.7 10 0.00044 16.9 2.3 30 18-47 10-39 (321)
336 2hyj_A Putative TETR-family tr 44.6 5.9 0.00025 18.5 1.0 42 25-66 30-71 (200)
337 2eh3_A Transcriptional regulat 44.3 10 0.00042 17.0 2.1 41 25-65 20-60 (179)
338 2qwt_A Transcriptional regulat 44.3 9 0.00038 17.3 1.9 41 27-67 32-72 (196)
339 3lhq_A Acrab operon repressor 44.1 10 0.00043 17.0 2.1 40 26-65 33-72 (220)
340 3gbg_A TCP pilus virulence reg 43.9 13 0.00055 16.3 2.7 31 25-56 183-213 (276)
341 3by6_A Predicted transcription 43.8 11 0.00044 16.9 2.2 32 15-46 16-54 (126)
342 2dg8_A Putative TETR-family tr 43.7 7.2 0.0003 17.9 1.3 42 25-66 27-68 (193)
343 3kkc_A TETR family transcripti 43.6 7.4 0.00031 17.9 1.4 38 26-63 31-68 (177)
344 1iuf_A Centromere ABP1 protein 43.1 3.1 0.00013 20.3 -0.6 27 25-51 28-60 (144)
345 3dcf_A Transcriptional regulat 43.1 15 0.00064 15.9 6.0 49 26-74 50-98 (218)
346 2i10_A Putative TETR transcrip 43.0 5 0.00021 19.0 0.4 38 25-62 29-66 (202)
347 3eup_A Transcriptional regulat 42.8 15 0.00065 15.8 4.8 59 16-74 20-78 (204)
348 3a02_A Homeobox protein arista 42.7 11 0.00045 16.9 2.1 23 51-73 21-43 (60)
349 3c3w_A Two component transcrip 42.7 16 0.00065 15.8 3.0 19 26-44 163-181 (225)
350 3oou_A LIN2118 protein; protei 42.6 16 0.00066 15.8 3.0 31 25-55 19-49 (108)
351 2ib1_A Death domain containing 42.5 16 0.00066 15.8 3.1 35 25-60 16-50 (91)
352 1qbj_A Protein (double-strande 42.4 16 0.00066 15.8 3.5 31 17-47 17-47 (81)
353 2id3_A Putative transcriptiona 42.3 13 0.00053 16.4 2.4 40 26-65 59-98 (225)
354 3bhq_A Transcriptional regulat 42.3 13 0.00056 16.3 2.5 40 26-65 31-70 (211)
355 3fiw_A Putative TETR-family tr 42.2 6.7 0.00028 18.1 1.0 29 26-54 44-72 (211)
356 1jgg_A Segmentation protein EV 42.1 10 0.00043 17.0 1.9 27 46-73 19-45 (60)
357 3col_A Putative transcription 41.9 7.5 0.00031 17.8 1.2 42 26-67 29-70 (196)
358 3pas_A TETR family transcripti 41.6 8.6 0.00036 17.5 1.5 42 25-66 26-67 (195)
359 1hw1_A FADR, fatty acid metabo 41.6 4 0.00017 19.6 -0.3 33 14-46 15-50 (239)
360 2k40_A Homeobox expressed in E 41.5 10 0.00044 16.9 1.9 26 47-73 20-45 (67)
361 2iai_A Putative transcriptiona 41.5 6.5 0.00027 18.3 0.8 41 24-64 47-87 (230)
362 3ni7_A Bacterial regulatory pr 41.5 11 0.00046 16.8 1.9 48 17-64 15-64 (213)
363 3eet_A Putative GNTR-family tr 41.3 12 0.00051 16.5 2.2 20 27-46 52-72 (272)
364 1e0g_A Membrane-bound lytic mu 41.1 6.5 0.00028 18.2 0.8 23 55-77 9-31 (48)
365 2nx4_A Transcriptional regulat 41.0 16 0.00069 15.6 5.2 42 25-66 28-69 (194)
366 2vpr_A Tetracycline resistance 41.0 5.9 0.00025 18.5 0.6 49 17-65 14-62 (207)
367 2g7s_A Transcriptional regulat 40.3 17 0.00071 15.6 4.9 47 23-69 24-70 (194)
368 1p4x_A Staphylococcal accessor 39.6 9.5 0.0004 17.2 1.4 21 27-47 50-70 (250)
369 3jth_A Transcription activator 39.6 11 0.00045 16.9 1.7 23 25-47 34-56 (98)
370 2p5k_A Arginine repressor; DNA 39.5 17 0.00073 15.5 4.0 31 17-47 8-44 (64)
371 1puf_B PRE-B-cell leukemia tra 39.1 13 0.00055 16.3 2.1 22 52-73 27-48 (73)
372 3geu_A Intercellular adhesion 39.1 6 0.00025 18.5 0.3 39 21-59 17-55 (189)
373 1zk8_A Transcriptional regulat 39.0 6.5 0.00027 18.2 0.5 43 25-67 26-68 (183)
374 1akh_A Protein (mating-type pr 38.9 13 0.00056 16.2 2.1 23 51-73 27-49 (61)
375 1k61_A Mating-type protein alp 38.8 13 0.00053 16.4 1.9 21 53-73 25-45 (60)
376 3clo_A Transcriptional regulat 38.8 18 0.00075 15.4 4.8 23 25-47 210-232 (258)
377 3c7j_A Transcriptional regulat 38.6 13 0.00056 16.3 2.0 43 3-45 18-67 (237)
378 1r8e_A Multidrug-efflux transp 38.4 16 0.00069 15.7 2.5 47 28-74 6-70 (278)
379 2hxo_A Putative TETR-family tr 38.4 5 0.00021 19.0 -0.2 49 15-63 22-72 (237)
380 2oqg_A Possible transcriptiona 38.3 18 0.00076 15.4 3.2 23 25-47 32-54 (114)
381 3c07_A Putative TETR-family tr 38.2 14 0.00061 16.0 2.2 35 26-60 60-94 (273)
382 1ftt_A TTF-1 HD, thyroid trans 38.0 14 0.00059 16.1 2.1 23 51-73 24-46 (68)
383 3nau_A Zinc fingers and homeob 37.7 13 0.00056 16.2 1.9 41 25-73 8-48 (66)
384 1bl0_A Protein (multiple antib 37.4 11 0.00046 16.8 1.4 36 15-50 13-50 (129)
385 3e7q_A Transcriptional regulat 37.4 11 0.00046 16.8 1.4 44 23-66 30-73 (215)
386 2dbf_A Nuclear factor NF-kappa 37.1 19 0.0008 15.3 3.6 44 28-74 31-74 (100)
387 3m8j_A FOCB protein; all-alpha 37.0 16 0.00069 15.7 2.3 21 25-45 58-78 (111)
388 1x2n_A Homeobox protein pknox1 37.0 15 0.00062 16.0 2.1 21 53-73 34-54 (73)
389 2da1_A Alpha-fetoprotein enhan 36.9 15 0.00064 15.9 2.1 39 27-73 13-51 (70)
390 2rek_A Putative TETR-family tr 36.9 13 0.00056 16.2 1.8 40 26-65 34-73 (199)
391 2vi6_A Homeobox protein nanog; 36.8 15 0.00062 15.9 2.1 39 27-73 9-47 (62)
392 1r1t_A Transcriptional repress 36.8 15 0.00063 15.9 2.1 21 27-47 59-79 (122)
393 2qko_A Possible transcriptiona 36.7 19 0.00081 15.2 4.1 46 25-70 46-91 (215)
394 1r1u_A CZRA, repressor protein 36.4 19 0.00082 15.2 3.6 23 25-47 37-59 (106)
395 1ig7_A Homeotic protein MSX-1; 36.2 15 0.00064 15.9 2.0 22 51-72 22-43 (58)
396 2ek5_A Predicted transcription 36.1 20 0.00083 15.2 4.2 33 14-46 8-47 (129)
397 3ihu_A Transcriptional regulat 36.0 12 0.00051 16.5 1.5 32 14-45 20-57 (222)
398 2id6_A Transcriptional regulat 36.0 20 0.00083 15.1 4.1 40 23-62 21-60 (202)
399 2dmu_A Homeobox protein goosec 35.6 15 0.00062 16.0 1.9 23 51-73 29-51 (70)
400 1b4a_A Arginine repressor; hel 35.6 20 0.00084 15.1 4.1 32 17-48 8-45 (149)
401 1t33_A Putative transcriptiona 35.6 18 0.00077 15.3 2.4 32 29-60 33-64 (224)
402 1bw5_A ISL-1HD, insulin gene e 35.1 15 0.00065 15.8 1.9 39 27-73 9-47 (66)
403 3ccy_A Putative TETR-family tr 35.0 18 0.00078 15.3 2.3 40 26-65 33-72 (203)
404 2q24_A Putative TETR family tr 35.0 16 0.00069 15.6 2.0 46 28-73 35-80 (194)
405 1du6_A PBX1, homeobox protein 34.8 17 0.00071 15.6 2.1 19 54-72 31-49 (64)
406 1zq3_P PRD-4, homeotic bicoid 34.5 17 0.00073 15.5 2.1 23 51-73 24-46 (68)
407 2hdd_A Protein (engrailed home 34.2 19 0.00079 15.3 2.2 39 27-73 9-47 (61)
408 2hs5_A Putative transcriptiona 33.9 14 0.00057 16.2 1.5 38 28-65 52-105 (239)
409 2w53_A Repressor, SMet; antibi 33.9 9.1 0.00038 17.3 0.6 48 19-66 21-70 (219)
410 1sgm_A Putative HTH-type trans 33.9 9 0.00038 17.3 0.6 40 11-50 8-49 (191)
411 3f6v_A Possible transcriptiona 33.9 8.7 0.00037 17.4 0.5 23 25-47 69-91 (151)
412 2dmq_A LIM/homeobox protein LH 33.9 16 0.00069 15.7 1.9 23 51-73 29-51 (80)
413 3k2a_A Homeobox protein MEIS2; 33.9 18 0.00074 15.5 2.1 21 53-73 25-45 (67)
414 3a03_A T-cell leukemia homeobo 33.8 18 0.00075 15.4 2.1 22 51-72 19-40 (56)
415 2da3_A Alpha-fetoprotein enhan 33.8 20 0.00082 15.2 2.3 22 52-73 40-61 (80)
416 3dbw_A Transcriptional regulat 33.6 18 0.00074 15.5 2.0 32 14-45 24-61 (226)
417 2x4h_A Hypothetical protein SS 33.4 21 0.00088 15.0 2.4 21 27-47 31-51 (139)
418 2cue_A Paired box protein PAX6 33.3 15 0.00064 15.9 1.7 24 50-73 28-51 (80)
419 2np3_A Putative TETR-family re 33.1 7.4 0.00031 17.9 0.0 32 25-56 48-79 (212)
420 2hi3_A Homeodomain-only protei 33.0 19 0.0008 15.3 2.1 40 27-73 8-47 (73)
421 2ev1_A Hypothetical protein RV 32.9 18 0.00075 15.4 1.9 23 28-50 79-101 (222)
422 2da2_A Alpha-fetoprotein enhan 32.5 17 0.0007 15.6 1.7 39 27-73 13-51 (70)
423 2oa4_A SIR5; structure, struct 32.5 18 0.00074 15.5 1.8 40 26-65 48-93 (101)
424 3bqs_A Uncharacterized protein 32.5 22 0.00095 14.8 6.4 59 1-66 3-62 (93)
425 1on2_A Transcriptional regulat 32.4 23 0.00095 14.8 3.8 27 21-47 15-42 (142)
426 1nk2_P Homeobox protein VND; h 32.2 19 0.00081 15.2 2.0 23 51-73 31-53 (77)
427 1y66_A Engrailed homeodomain; 32.2 23 0.00096 14.8 3.2 34 14-47 7-44 (52)
428 2e19_A Transcription factor 8; 32.1 20 0.00083 15.1 2.1 23 51-73 25-47 (64)
429 2da5_A Zinc fingers and homeob 32.0 19 0.00079 15.3 1.9 26 47-73 26-51 (75)
430 2e1o_A Homeobox protein PRH; D 31.9 20 0.00082 15.2 2.0 23 51-73 29-51 (70)
431 1le8_B Mating-type protein alp 31.9 19 0.0008 15.3 1.9 21 53-73 29-49 (83)
432 1b72_B Protein (PBX1); homeodo 31.8 20 0.00086 15.1 2.1 21 53-73 28-48 (87)
433 2p4w_A Transcriptional regulat 31.6 23 0.00097 14.7 2.7 23 25-47 26-48 (202)
434 1fjl_A Paired protein; DNA-bin 31.6 22 0.00093 14.8 2.2 23 51-73 40-62 (81)
435 1ocp_A OCT-3; DNA-binding prot 31.5 19 0.00079 15.3 1.9 23 51-73 30-52 (67)
436 2ecb_A Zinc fingers and homeob 31.5 16 0.00068 15.7 1.5 23 51-73 33-55 (89)
437 2da4_A Hypothetical protein DK 31.4 21 0.00087 15.0 2.1 39 28-73 15-56 (80)
438 1wi3_A DNA-binding protein SAT 31.4 18 0.00075 15.4 1.7 25 49-73 28-52 (71)
439 2kt0_A Nanog, homeobox protein 31.2 19 0.00079 15.3 1.8 22 51-72 44-65 (84)
440 2h1k_A IPF-1, pancreatic and d 31.1 21 0.00088 15.0 2.1 26 47-73 22-47 (63)
441 1x2m_A LAG1 longevity assuranc 31.0 20 0.00085 15.1 2.0 25 49-73 21-45 (64)
442 3egq_A TETR family transcripti 30.6 24 0.001 14.6 6.4 39 25-63 22-60 (170)
443 2dms_A Homeobox protein OTX2; 30.6 21 0.00089 15.0 2.0 23 51-73 29-51 (80)
444 1uly_A Hypothetical protein PH 30.6 24 0.001 14.6 3.1 23 25-47 31-53 (192)
445 1ahd_P Antennapedia protein mu 30.5 22 0.00091 14.9 2.1 23 51-73 24-46 (68)
446 2dmn_A Homeobox protein TGIF2L 30.3 21 0.00088 15.0 1.9 21 53-73 34-54 (83)
447 2djn_A Homeobox protein DLX-5; 30.2 19 0.00082 15.2 1.8 26 47-73 26-51 (70)
448 3f6o_A Probable transcriptiona 30.1 13 0.00056 16.2 0.9 23 25-47 29-51 (118)
449 2dn0_A Zinc fingers and homeob 30.1 20 0.00082 15.2 1.8 39 27-73 14-52 (76)
450 2dmt_A Homeobox protein BARH-l 30.1 21 0.00089 15.0 1.9 23 51-73 39-61 (80)
451 2kko_A Possible transcriptiona 30.0 19 0.0008 15.3 1.7 22 26-47 37-58 (108)
452 2d96_A Nuclear factor NF-kappa 29.9 25 0.001 14.5 4.6 43 29-74 32-74 (109)
453 2dmp_A Zinc fingers and homeob 29.8 25 0.001 14.5 2.2 23 51-73 35-57 (89)
454 1y6u_A XIS, excisionase from t 29.7 17 0.00071 15.6 1.4 24 26-49 15-38 (70)
455 2glo_A Brinker CG9653-PA; prot 29.7 24 0.001 14.6 2.2 34 19-52 15-50 (59)
456 3edp_A LIN2111 protein; APC883 29.5 22 0.00094 14.8 2.0 34 13-46 12-52 (236)
457 1yz8_P Pituitary homeobox 2; D 29.5 17 0.00071 15.6 1.3 22 51-72 25-46 (68)
458 2da7_A Zinc finger homeobox pr 29.4 23 0.00098 14.7 2.1 23 51-73 27-49 (71)
459 2iu5_A DHAS, hypothetical prot 29.4 7.4 0.00031 17.9 -0.5 28 27-54 33-60 (195)
460 1c9b_A General transcription f 29.3 25 0.0011 14.5 2.6 48 25-72 63-119 (207)
461 1puf_A HOX-1.7, homeobox prote 29.3 24 0.00099 14.7 2.1 22 52-73 36-57 (77)
462 2l1p_A DNA-binding protein SAT 29.0 26 0.0011 14.4 3.4 39 15-55 22-60 (83)
463 2ecc_A Homeobox and leucine zi 28.7 23 0.00095 14.8 1.9 23 51-73 25-47 (76)
464 2np5_A Transcriptional regulat 28.2 26 0.0011 14.3 6.8 50 18-67 18-69 (203)
465 1rr7_A Middle operon regulator 27.6 27 0.0011 14.3 3.6 34 33-68 32-66 (129)
466 3nar_A ZHX1, zinc fingers and 27.4 25 0.0011 14.5 1.9 38 28-73 32-69 (96)
467 1qgp_A Protein (double strande 27.4 27 0.0012 14.2 3.1 33 15-47 15-51 (77)
468 2djp_A Hypothetical protein SB 27.3 15 0.00063 15.9 0.8 20 56-75 23-42 (77)
469 1ais_B TFB TFIIB, protein (tra 27.3 27 0.0012 14.2 2.6 46 26-71 68-124 (200)
470 3me5_A Cytosine-specific methy 27.2 28 0.0012 14.2 3.7 51 17-69 21-80 (482)
471 1mnm_C Protein (MAT alpha-2 tr 27.2 26 0.0011 14.4 1.9 21 53-73 54-74 (87)
472 2cra_A Homeobox protein HOX-B1 27.2 23 0.00098 14.7 1.7 23 51-73 29-51 (70)
473 3bwg_A Uncharacterized HTH-typ 27.1 26 0.0011 14.4 2.0 20 27-46 28-48 (239)
474 1b8i_A Ultrabithorax, protein 27.1 27 0.0011 14.3 2.1 43 23-73 22-64 (81)
475 1b72_A Protein (homeobox prote 26.5 28 0.0012 14.1 2.2 38 27-72 40-77 (97)
476 2qco_A CMER; transcriptional r 26.4 4.7 0.0002 19.1 -1.9 41 26-66 32-72 (210)
477 3dew_A Transcriptional regulat 26.2 29 0.0012 14.1 7.9 43 25-67 26-68 (206)
478 3on2_A Probable transcriptiona 26.2 7.3 0.00031 17.9 -1.0 38 26-63 31-68 (199)
479 1au7_A Protein PIT-1, GHF-1; c 26.0 29 0.0012 14.1 2.1 41 14-54 7-53 (146)
480 3kkd_A Transcriptional regulat 25.8 7.9 0.00033 17.7 -0.9 40 25-64 53-92 (237)
481 3a01_A Homeodomain-containing 25.3 24 0.001 14.6 1.5 38 28-73 24-61 (93)
482 2qtq_A Transcriptional regulat 25.1 30 0.0013 14.0 8.9 70 4-73 11-82 (213)
483 3f8m_A GNTR-family protein tra 24.7 31 0.0013 13.9 2.0 18 29-46 38-55 (248)
484 3dp7_A SAM-dependent methyltra 24.5 31 0.0013 13.9 2.4 25 26-50 49-73 (363)
485 2gqq_A Leucine-responsive regu 24.0 3.2 0.00013 20.3 -3.2 35 8-45 11-45 (163)
486 2vpv_A Protein MIF2, MIF2P; nu 23.4 14 0.00059 16.1 0.0 37 38-75 12-48 (166)
487 3nrg_A TETR family transcripti 22.8 5 0.00021 19.0 -2.4 39 26-64 32-70 (217)
488 1wh5_A ZF-HD homeobox family p 22.2 34 0.0014 13.6 3.0 22 52-73 44-65 (80)
489 2zcm_A Biofilm operon icaabcd 22.0 35 0.0015 13.6 6.6 46 17-62 15-62 (192)
490 3hrs_A Metalloregulator SCAR; 21.9 35 0.0015 13.6 2.6 23 26-48 19-41 (214)
491 3hot_A Transposable element ma 21.2 36 0.0015 13.5 3.2 26 23-48 18-50 (345)
492 3on4_A Transcriptional regulat 20.9 36 0.0015 13.5 6.4 56 9-64 10-67 (191)
493 3h6p_A ESAT-6 like protein ESX 20.7 35 0.0015 13.5 1.6 37 7-51 14-50 (111)
494 3him_A Probable transcriptiona 20.1 38 0.0016 13.3 2.9 113 27-139 36-149 (211)
No 1
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630}
Probab=99.73 E-value=3.5e-17 Score=128.86 Aligned_cols=114 Identities=17% Similarity=0.185 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999999999819979999998724699999985289883589999999754999999506774431111101454211
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~~~~~~~~~~~~~~~ 93 (144)
+||++||.+|+.+||||++||..+|||.++|++||+|.+.|+.++|.+||++|+||++|||........+
T Consensus 12 ~ig~rlk~~R~~~gltq~elA~~lgvs~s~is~~E~G~~~ps~~~l~~ia~~l~v~~~~l~~~~~~~~~~---------- 81 (126)
T 3ivp_A 12 ALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKS---------- 81 (126)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSCCCCCHHHHHHHHHHHTCCSHHHHSCCCCCCCC----------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCC----------
T ss_conf 9999999999984999999967309998799999707779999999999999796899982888754353----------
Q ss_pred HHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2038678999999872899999999999999999999997539998732
Q gi|254780424|r 94 FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIEEECMV 142 (144)
Q Consensus 94 ~~~~~e~~~l~~~~~~l~~~~~r~~i~~l~~~l~~~e~~~~~~~ee~l~ 142 (144)
.....+...+..+++. ....+..+++.+...........|++..
T Consensus 82 ----~~~~~l~~~~~~l~~~-~~~~i~~i~~~~~~~~e~~e~~~e~l~~ 125 (126)
T 3ivp_A 82 ----TKRRQLENKIDNFTDA-DLVIMESVADGIVKSKEVGEMAGENLYF 125 (126)
T ss_dssp ----HHHHHHHHHTTTCCHH-HHHHHHHHHHHHHHHHHHHC--------
T ss_pred ----HHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf ----7999999999749999-9999999999999807777614651101
No 2
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=99.67 E-value=5.4e-16 Score=121.27 Aligned_cols=66 Identities=12% Similarity=0.223 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf 999999999998199799999987246999999852898835899999997549999995067744
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~ 79 (144)
.+|+|||.+|+.+||||++||+++|||.++|++||+|.+.|+.++|.+||++|||+++||+++...
T Consensus 9 ~~g~rlk~~R~~~gltq~elA~~~gvs~~~vs~~E~g~~~Ps~~~l~~ia~~l~vs~~~Ll~~~~~ 74 (114)
T 3op9_A 9 QFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGETKPDIEKLIRLATYFHLSIDELVGYVQE 74 (114)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTSSCCCHHHHHHHHHHHTCCHHHHHTCCCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 999999999998599999997610887327999965878999999999999959989999288753
No 3
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A
Probab=99.67 E-value=6.6e-17 Score=127.13 Aligned_cols=69 Identities=22% Similarity=0.282 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHCCCCHHHHHCCCCCC
Q ss_conf 9999999999999819979999998724699999985289-88358999999975499999950677443
Q gi|254780424|r 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFFDVSPTV 80 (144)
Q Consensus 12 d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~-~~ps~~~L~~iA~~l~v~~~~l~~~~~~~ 80 (144)
...+|+|||++|+++||||++||+++|||+++||+||+|+ .+|++.+|++||++|+|++.+||...+..
T Consensus 8 ~~~lg~rir~lR~~~gltl~eLA~~~GvS~~~lS~iE~G~~~~psl~~L~kia~aL~v~~~~l~~~~~~~ 77 (198)
T 2bnm_A 8 STGFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGND 77 (198)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTTCTTCBHHHHHHHHHHTTSCTGGGSCCCCCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCC
T ss_conf 8999999999999859999999988797999999867389889989999999999797999981864225
No 4
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3}
Probab=99.65 E-value=1.7e-16 Score=124.54 Aligned_cols=68 Identities=21% Similarity=0.316 Sum_probs=64.2
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 89989999999999999981997999999872--469999998528988358999999975499999950
Q gi|254780424|r 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 (144)
Q Consensus 7 ~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lG--vs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~ 74 (144)
|+......||++||.+|+++||||++||+++| ||+++|++||+|.+.|+.++|.+||++||||++|||
T Consensus 1 M~~~~~~~ig~rir~~R~~~gltq~elA~~~g~~is~~~is~~E~G~~~ps~~~l~~la~~l~v~~~~Ll 70 (71)
T 2ewt_A 1 MSSEYAKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELL 70 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTTSSCHHHHHHHHHTCSCCCHHHHHHHHHHHTSCGGGGC
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
T ss_conf 9738999999999999988499899999898887479999999859966768999999999896899978
No 5
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=99.64 E-value=2.7e-16 Score=123.17 Aligned_cols=69 Identities=20% Similarity=0.321 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf 999999999999998199799999987246999999852898835899999997549999995067744
Q gi|254780424|r 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 (144)
Q Consensus 11 ~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~ 79 (144)
.+..||+|||++|+++||||++||+++|||.++||+||+|...|++++|.+||++|+|++++||...+.
T Consensus 8 ~~~~ig~rir~~R~~~gls~~~lA~~~gvs~~~ls~iE~g~~~ps~~~l~~ia~~l~v~~~~l~~~~~~ 76 (192)
T 1y9q_A 8 FKSQIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQ 76 (192)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHSSCHHHHHHHHTTCSCCCHHHHHHHHHHHTCCSGGGGTTSTH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCCCC
T ss_conf 899999999999998199999999998939999999986998776347999998855689995479963
No 6
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3
Probab=99.63 E-value=3.5e-15 Score=116.09 Aligned_cols=66 Identities=23% Similarity=0.337 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf 99999999999819979999998724699999985289-8835899999997549999995067744
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFFDVSPT 79 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~-~~ps~~~L~~iA~~l~v~~~~l~~~~~~ 79 (144)
.||+|||.+|+.+||||++||+++|||+++|++||+|. ..|+.++|.+||++||||++|||+....
T Consensus 1 iiG~rlr~lR~~~g~tq~~lA~~~Gvs~~~is~~E~G~~~~p~~~~l~~ia~~l~v~~~~l~~~~~~ 67 (111)
T 1b0n_A 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHE 67 (111)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCSCCCHHHHHHHHHHHTCCHHHHHCCTTC
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 9799999999983999999987849889999999879989999999999999989879998489866
No 7
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=99.60 E-value=2e-15 Score=117.68 Aligned_cols=70 Identities=24% Similarity=0.419 Sum_probs=64.2
Q ss_pred CCHHH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 99899--99999999999981997999999872469999998528988358999999975499999950677
Q gi|254780424|r 8 PNPVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 (144)
Q Consensus 8 ~~~~d--~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~ 77 (144)
.|.+| ..+|++||.+|+.+||||++||..+|||+++|++||+|...|+++.|.+||.+|||++++||...
T Consensus 2 ~~~~~~~~~ig~~ir~~R~~~gltq~~lA~~~gvs~~~i~~~E~g~~~ps~~~l~~la~~l~v~~~~l~~~~ 73 (77)
T 2b5a_A 2 INEIEIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPASTFFRKM 73 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
T ss_conf 865899999999999999981999999998979699999999879989999999999999798899985432
No 8
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=99.60 E-value=8.5e-16 Score=120.00 Aligned_cols=75 Identities=13% Similarity=0.158 Sum_probs=66.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCC
Q ss_conf 99876689989999999999999981997999999872469999998528988358999999975499999950677443
Q gi|254780424|r 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 (144)
Q Consensus 1 ~~~~~~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~~ 80 (144)
||+++.. ..+|++||.+|.++|+||++||+++|||+++|++||+|.+.|+.++|.+||++|||++++|++.....
T Consensus 1 M~~~~~~-----~~f~~~Lk~lr~~~~lsq~elA~~lgvs~~~is~~e~G~~~ps~~~l~~la~~l~v~~~~l~~~~~~~ 75 (94)
T 2kpj_A 1 MVKDKQK-----AIFSENLNSYIAKSEKTQLEIAKSIGVSPQTFNTWCKGIAIPRMGKVQALADYFNINKSDLIEDKKLN 75 (94)
T ss_dssp CCCCHHH-----HHHHHHHHHHHTTSSSCHHHHHHHHTCCHHHHHHHHTTSCCCCHHHHHHHHHHHTCCTHHHHSCSCCC
T ss_pred CCCCHHH-----HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCC
T ss_conf 9663799-----99999999999994998999999889288369999737679999999999999897899990888777
No 9
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=99.58 E-value=3.3e-15 Score=116.27 Aligned_cols=64 Identities=23% Similarity=0.439 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 9999999999981997999999872469999998528988358999999975499999950677
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~ 77 (144)
.||+|||.+|..+||||++||+.+|||.++|++||+|.+.|+.+.|.+||++|+|+++||+.++
T Consensus 5 ~ig~rlr~~R~~~glsq~~la~~~gvs~~~i~~~e~g~~~p~~~~l~~la~~l~v~~~~ll~gd 68 (68)
T 2r1j_L 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGD 68 (68)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCBHHHHHHHHHHTTSCHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCC
T ss_conf 9999999999985999999988739999999999879989999999999999799799985878
No 10
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=99.58 E-value=3.6e-15 Score=115.95 Aligned_cols=66 Identities=23% Similarity=0.422 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf 999999999998199799999987246999999852898835899999997549999995067744
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~ 79 (144)
.||+|||++|+.+||||++||+++|||+++|++||+|.+.|+.+.|.+||++|+|+++||+.+...
T Consensus 5 ~ig~rik~~R~~~glsq~~la~~~gvs~~~i~~~e~G~~~p~~~~l~~ia~~~~v~~~~ll~~~~~ 70 (76)
T 1adr_A 5 LMGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLKGDLS 70 (76)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHTTSCHHHHHHTCSC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 999999999999399999999997969999999987998999999999999969889999579996
No 11
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=99.58 E-value=4e-15 Score=115.71 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 8999999999999998199799999987246999999852898835899999997549999995067
Q gi|254780424|r 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144)
Q Consensus 10 ~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144)
.+..+||++||.+|..+||||++||+++||+.++|++||+|.+.|+.+.|.+||++|||++++||..
T Consensus 24 ~~~~~iG~rLk~~R~~~glSq~~lA~~~gis~~~ls~~E~g~~~ps~~~l~~ia~~l~v~~~~ll~~ 90 (117)
T 3f52_A 24 LLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELERGRKEVSSELLASVCHALGASVADVLIE 90 (117)
T ss_dssp CHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHC
T ss_conf 9999999999999998199999999885333999999986998999999999999989979999624
No 12
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A
Probab=99.58 E-value=2e-15 Score=117.69 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 999999999998199799999987246999999852898835899999997549999995067
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144)
|.|++||++|+++||||.+||+++|||+++||+||+|++.|+.+.+.+||++|||+++||++.
T Consensus 8 hPG~~Lk~~r~~~gltq~~lA~~lgvs~~~is~~e~G~~~~s~~~~~~la~~lgvs~~~ll~~ 70 (94)
T 2ict_A 8 RPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNL 70 (94)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
T ss_conf 989999999999699999999984963899869872764472999999999999099999743
No 13
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=99.57 E-value=5.5e-15 Score=114.82 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf 999999999998199799999987246999999852898-83589999999754999999506774
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFFDVSP 78 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~-~ps~~~L~~iA~~l~v~~~~l~~~~~ 78 (144)
.||+|||++|.++||||.+||+.+|||+++|++||+|++ .|++++|.+||++|||++++||+..+
T Consensus 7 ~i~~ri~~lr~~~gls~~~LA~~~Gis~~tis~~e~g~~~~p~~~~l~kia~~l~v~~~~l~~~~~ 72 (78)
T 3b7h_A 7 FVSEHLMELITQQNLTINRVATLAGLNQSTVNAMFEGRSKRPTITTIRKVCGTLGISVHDFFDFPP 72 (78)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHCTTCCCCCHHHHHHHHHHHTCCHHHHTCSTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHCCCCC
T ss_conf 999999999999399899999988939999999986998896899999999998993999909984
No 14
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4}
Probab=99.56 E-value=3.5e-16 Score=122.46 Aligned_cols=65 Identities=18% Similarity=0.312 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf 99999999999819979999998724699999985289883589999999754999999506774
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~ 78 (144)
.||++||++|.++||||.+||+.+|||+++||+||+|++.|+.++|.+||++|||+++||+++..
T Consensus 1 ~iG~rik~lR~~~glsq~eLA~~~Gis~~~is~~E~G~~~ps~~~l~~la~~l~v~~~~ll~~~~ 65 (158)
T 2p5t_A 1 MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDIVGEDK 65 (158)
T ss_dssp -----------------------------------------------------------------
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 97899999999849999999999895999999998799899999999999993998999836875
No 15
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=99.56 E-value=5.2e-15 Score=114.98 Aligned_cols=61 Identities=26% Similarity=0.349 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 9999999999981997999999872469999998528988358999999975499999950
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~ 74 (144)
.+|++||.+|+.+||||.+||+.+|||+++|++||+|...|+.++|.+||++|||++++||
T Consensus 13 ~ig~~ik~~R~~~gltq~~lA~~~gis~~~i~~~E~g~~~p~~~~l~~ia~~l~v~~~~lF 73 (74)
T 1y7y_A 13 KFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRELF 73 (74)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTSCGGGGC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHC
T ss_conf 9999999999981999999998969799999999879989999999999999893999984
No 16
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=99.55 E-value=1.5e-14 Score=112.00 Aligned_cols=68 Identities=22% Similarity=0.218 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 98999999999999998199799999987246999999852898835899999997549999995067
Q gi|254780424|r 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144)
Q Consensus 9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144)
..+...||.+||++|+.+||||++||+++|+|.++|++||+|++.|+.+++.+||++|+|++++||+.
T Consensus 23 ~~~~~~ig~~Ik~lR~~~glsq~elA~~~gis~~~is~iE~G~~~ps~~~l~~ia~~l~v~~~~l~~~ 90 (99)
T 3g5g_A 23 SFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEM 90 (99)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCSCCBHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
T ss_conf 99999999999999998199999999997978988999986998999999999999969989999761
No 17
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=99.55 E-value=2.2e-15 Score=117.42 Aligned_cols=75 Identities=28% Similarity=0.329 Sum_probs=67.0
Q ss_pred CCCHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCC
Q ss_conf 899899999999999999--819979999998724699999985289883589999999754999999506774431
Q gi|254780424|r 7 IPNPVDINVGKRIRLRRM--ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 (144)
Q Consensus 7 ~~~~~d~~iG~rIr~~R~--~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~~~ 81 (144)
.|..++.+||.+|+.+|. ++||||++||+.+|||.++|++||+|...|+.++|.+||++|||++.+++.+.+...
T Consensus 27 ~~~~v~~~iG~~I~~~R~~~~kglTQ~eLA~~lgvs~~~is~~E~G~~~ps~~~l~kia~~L~V~L~~~~~g~p~~~ 103 (107)
T 2jvl_A 27 KPKTVGKEVGKAIEQGRQKFEPTMTQAELGKEIGETAATVASYERGTATPDQNILSKMERVLNVKLRGANIGAPRLG 103 (107)
T ss_dssp CCCCCCHHHHHHHHHHHTTSSSCCCHHHHHHHHTCCHHHHHHHTTTCSCCCHHHHHHHHHTTTCBSSSSSTTBCSSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 85615499999999999998869989999999887899999998599789999999999994996766548998889
No 18
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=99.55 E-value=1.1e-15 Score=119.21 Aligned_cols=63 Identities=21% Similarity=0.273 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 999999999998199799999987246999999852898835899999997549999995067
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144)
++|++||.+|+.+||||++||+++||++++|++||+|.+.|+.+.|.+||++|+||++|||.+
T Consensus 23 ~~~~~Lk~lR~~~glTq~elA~~lgvs~~tis~~E~G~~~Ps~~~L~kla~~l~vs~~~ll~~ 85 (111)
T 3mlf_A 23 NAMKTLKELRTDYGLTQKELGDLFKVSSRTIQNMEKDSTNIKDSLLSKYMSAFNVKYDDIFLG 85 (111)
T ss_dssp SSCEEHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHHCCTTCCHHHHHHHHHHHTCCGGGEECC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCC
T ss_conf 999999999998599999999996989999999984999999999999999989489999179
No 19
>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102}
Probab=99.54 E-value=5.6e-15 Score=114.74 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=63.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHC
Q ss_conf 66899899999999999999819979999998724699999985289883589999999754999999506
Q gi|254780424|r 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 (144)
Q Consensus 5 ~~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~ 75 (144)
.++-+|. |.|++||++|+.+||||.+||+++|||+++|++||+|++.|+.+.+.+||++||+++++|++
T Consensus 11 ~~~~~p~--hPGe~Lke~~~~~gisq~eLA~~lGvs~~~is~~e~G~~~~s~~~a~~La~~lgvs~~~~l~ 79 (104)
T 3cec_A 11 DRLVRPI--HPGEVIADILDDLDINTANFAEILGVSNQTIQEVINGQRSITVDIAIRLGKALGNGPRLWLN 79 (104)
T ss_dssp ---CCCC--CHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCC--CCCHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 4568998--83499999999879989999999783789999997588789899999999998919999985
No 20
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=99.54 E-value=8e-15 Score=113.78 Aligned_cols=64 Identities=20% Similarity=0.446 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf 99999999998199799999987246999999852898835899999997549999995067744
Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 (144)
Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~ 79 (144)
||+|||.+|..+||||.+||+++||++++|++||+|++ |+.++|.+||++|+|+++|||.+...
T Consensus 2 ig~rik~~R~~~gltq~elA~~~gis~~~~~~~e~g~~-~~~~~l~~ia~~l~v~~~~l~~g~~~ 65 (69)
T 1r69_A 2 ISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKT-KRPRFLPELASALGVSVDWLLNGTSD 65 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSC-SSCTTHHHHHHHTTCCHHHHHHCC--
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCC-CCHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 89999999999499999998863989999999986999-89999999999969889998289997
No 21
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=99.53 E-value=1.4e-14 Score=112.23 Aligned_cols=65 Identities=25% Similarity=0.318 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf 999999999998199799999987246999999852898835899999997549999995067744
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~ 79 (144)
.||+|||.+|+.+||||.+||+.+|||+++|++||+|.+.|+ +.|.+||++|||+++||+.+...
T Consensus 3 ~i~~rik~~r~~~gltq~elA~~~gis~~~is~~e~g~~~~~-~~l~~ia~~l~v~~~~Ll~g~~~ 67 (71)
T 1zug_A 3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKRP-RFLFEIAMALNCDPVWLQYGTKR 67 (71)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCSSC-STHHHHHHHTTSCHHHHHHSCCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCH-HHHHHHHHHHCCCHHHHHCCCCC
T ss_conf 899999999999399999997841989999999987999999-99999999949979998419986
No 22
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=99.52 E-value=3.6e-15 Score=115.95 Aligned_cols=63 Identities=17% Similarity=0.103 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 999999999981997999999872469999998528988358999999975499999950677
Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 (144)
Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~ 77 (144)
||.|||.+|..+||||.+||+.+||++++|++||+|.+.|+.+.|.+||++|||+++|||.+.
T Consensus 9 i~~rIk~~r~~~g~tq~~lA~~lgis~~~is~~e~G~~~p~~~~l~~ia~~~~v~~~~Ll~~~ 71 (73)
T 3omt_A 9 IFNRLKSVLAEKGKTNLWLTETLDKNKTTVSKWCTNDVQPSLETLFDIAEALNVDVRELIVST 71 (73)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGGBCCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCC
T ss_conf 999999999993998999999859986678999849889986799999999894899981657
No 23
>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP}
Probab=99.52 E-value=3.5e-14 Score=109.69 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 8998999999999999998199799999987246999999852898835899999997549999995067
Q gi|254780424|r 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144)
Q Consensus 7 ~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144)
|...+=-.+|.+||.+|+++||||++||+++|+|+++|++||+|...|+++++.+||++|||++++||+.
T Consensus 4 m~~~~~~~i~~~lk~~R~~~glsq~~lA~~~gis~~~i~~~E~G~~~ps~~~l~~la~~l~i~~~~l~~~ 73 (82)
T 3clc_A 4 MESFLLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIERNSRNLTIKSLELIMKGLEVSDVVFFEM 73 (82)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTCCCCBHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCC
T ss_conf 7899999999999999998399999995703998879999985998999999999999979889999770
No 24
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=99.52 E-value=5.4e-15 Score=114.83 Aligned_cols=74 Identities=20% Similarity=0.327 Sum_probs=66.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 9987668998999999999999998199799999987246999999852898835899999997549999995067
Q gi|254780424|r 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144)
Q Consensus 1 ~~~~~~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144)
||.-.+.-++- .||++||.+|+.+||||++||+++|||+++|++||+|...|++++|.+||++|||++++++..
T Consensus 1 m~~~~~i~~~~--~lg~~lr~~R~~~glsq~~lA~~~gvs~~~is~~E~g~~~ps~~~l~~ia~~lgv~~~~~~~~ 74 (88)
T 2wiu_B 1 MMSFQKIYSPT--QLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPDNTTLTTFFKILQSLELSMTLCDAK 74 (88)
T ss_dssp -----CBCSHH--HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCGGGCBHHHHHHHHHHTTCEEEEEC--
T ss_pred CCCCCCCCCHH--HHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEEECC
T ss_conf 98742338999--999999999998599999997863998999999987999999999999999969940864579
No 25
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343}
Probab=99.52 E-value=2.8e-15 Score=116.65 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf 999999999999819979999998724699999985289883589999999754999999506774
Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 (144)
Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~ 78 (144)
..+|.|||.+|+++||||++||+++||++++|++||+|.+.|+.+.+.+||++|+||++||+++..
T Consensus 9 ~~i~~rik~~r~~~gltq~~lA~~~gvs~~tis~~e~g~~~p~~~~l~~ia~~l~v~~~~ll~~~~ 74 (76)
T 3bs3_A 9 QMMLNRIKVVLAEKQRTNRWLAEQMGKSENTISRWCSNKSQPSLDMLVKVAELLNVDPRQLINGKI 74 (76)
T ss_dssp -CCCBCHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGGBC---
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHCCCC
T ss_conf 999999999999909989999999888999999998599999999999999997997999966887
No 26
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=99.52 E-value=7.8e-15 Score=113.82 Aligned_cols=68 Identities=15% Similarity=0.093 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 89999999999999981997999999872469999998528988358999999975499999950677
Q gi|254780424|r 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 (144)
Q Consensus 10 ~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~ 77 (144)
+.-..||++||++|+.+||||.+||+++||++++|++||+|...|+++.|.+||++|+|++.+||...
T Consensus 10 ~~~~~l~~~lk~~R~~~gltq~elA~~~gvs~~~is~~E~g~~~~~~~~l~~la~~l~v~~~~l~~~~ 77 (83)
T 3f6w_A 10 ARYQALLDLLLEARSAAGITQKELAARLGRPQSFVSKTENAERRLDVIEFMDFCRGIGTDPYALLSKL 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999999982999999998973899999999879989999999999999599999998530
No 27
>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A
Probab=99.51 E-value=6.9e-15 Score=114.18 Aligned_cols=64 Identities=22% Similarity=0.266 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf 9999999999819979999998724699999985289883589999999754999999506774
Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 (144)
Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~ 78 (144)
|+.|||.+|.++||||.+||+.+|||+++|++||+|...|+.+++.+||++||||+++||...+
T Consensus 2 i~nri~~lR~~~g~tq~~lA~~~gis~~~is~~e~g~~~ps~~~l~~ia~~l~v~~~~lf~~e~ 65 (66)
T 1utx_A 2 IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQP 65 (66)
T ss_dssp EEECHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSCCCCHHHHHHHHHHTTSCHHHHEEECC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCCCCC
T ss_conf 8999999999849999999887299899999998799899999999999998977999829899
No 28
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi}
Probab=99.49 E-value=9.5e-14 Score=106.87 Aligned_cols=71 Identities=23% Similarity=0.277 Sum_probs=63.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC--HHHHH
Q ss_conf 766899899999999999999819979999998724699999985289883589999999754999--99950
Q gi|254780424|r 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP--ISFFF 74 (144)
Q Consensus 4 ~~~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~--~~~l~ 74 (144)
.+.++.|....+|++||.+|+.+||||++||+++|||+++|++||+|.+.|+++.|.+||++|++. +.+++
T Consensus 4 ~k~~~t~~~~~lg~~lk~~R~~~gltq~elA~~lgvs~~~is~~E~G~~~~~~~~l~~i~~aL~~~~~~~~~~ 76 (86)
T 3eus_A 4 TKTLRTPEHVYLCQRLRQARLDAGLTQADLAERLDKPQSFVAKVETRERRLDVIEFAKWMAACEGLDVVSEIV 76 (86)
T ss_dssp GGGSCSHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHTTSSCCBHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHH
T ss_conf 8788997999999999999998499999999997969999999988999999999999999908976199999
No 29
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=99.48 E-value=1.2e-14 Score=112.57 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 9999999999981997999999872469999998528988358999999975499999950677
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~ 77 (144)
.+|++|+.+|+.+||||++||+++|+|.++|++||+|...|+.+.|.+||++|||++++|+...
T Consensus 68 ~~G~~l~~lR~~~glTQ~elA~~~gis~~~is~iE~G~~~ps~~~l~kia~~lgvs~~el~~~~ 131 (141)
T 3kxa_A 68 AGGETFVSLRMKKGFTQSELATAAGLPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAAF 131 (141)
T ss_dssp HSSCCHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHTCSCCCHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999982998999999989699999999879978999999999999499899998655
No 30
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=99.47 E-value=1.7e-14 Score=111.66 Aligned_cols=68 Identities=22% Similarity=0.191 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 89999999999999981997999999872469999998528988358999999975499999950677
Q gi|254780424|r 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 (144)
Q Consensus 10 ~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~ 77 (144)
-++..||++||.+|+.+||||++||+.+||+.++|++||+|...|+.+++.+||++|+|++.+...+.
T Consensus 9 ~i~~~ig~~ik~~R~~~glsq~elA~~~gvs~~~is~~E~G~~~p~~~~l~kia~~L~v~L~~~~~~~ 76 (91)
T 1x57_A 9 RVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGK 76 (91)
T ss_dssp CCCCHHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHTBCCSSTTTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 37799999999999981998999998719899999999879988999999999999499864555789
No 31
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=99.47 E-value=2.6e-14 Score=110.48 Aligned_cols=65 Identities=17% Similarity=0.297 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH--CCCCHHHHHCCCC
Q ss_conf 9999999999981997999999872469999998528988358999999975--4999999506774
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV--LESPISFFFDVSP 78 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~--l~v~~~~l~~~~~ 78 (144)
-||+|||++|+.+||||++||+.+|||+++|++||+|.+.|+.+.|.+||.+ |++++.||+.+..
T Consensus 4 ~ig~rik~~R~~~gltq~elA~~~Gis~~tis~~E~g~~~p~~~~l~~ia~~~~~~~~~~wll~~~~ 70 (99)
T 2l49_A 4 TISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTPPTDVMMNILQTPQFTKYTLWFMTNQI 70 (99)
T ss_dssp CTTHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHTTTSSCCCHHHHHHHHSSSSSSSSSSTTTSSCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHCCCC
T ss_conf 9999999999993999999999969899999999879987998999999860377864788856998
No 32
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=99.46 E-value=1.8e-13 Score=105.03 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHCCCCHHHHHCCCCCCC
Q ss_conf 999999999999819979999998724699999985289-883589999999754999999506774431
Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFFDVSPTVC 81 (144)
Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~-~~ps~~~L~~iA~~l~v~~~~l~~~~~~~~ 81 (144)
.++|.+||++|+ |+||.+||+++|||+++|++||+|+ ..|++++|.+||++|||++++|+......+
T Consensus 15 ~~lG~~lr~~R~--~~s~~elA~~~gis~~~is~iE~G~~~~~s~~~l~~ia~~L~v~~~~Ll~~~~~~p 82 (86)
T 2ofy_A 15 QRLGELLRSARG--DMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVLDLSLDDVAAVVTFGP 82 (86)
T ss_dssp HHHHHHHHHHHT--TSCHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHTTCCHHHHHTTCCCSC
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHCCCCCC
T ss_conf 999999999998--78999999997979999999986997887599999999998978999962446899
No 33
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=99.46 E-value=1.1e-13 Score=106.35 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=59.6
Q ss_pred CHHHHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHC
Q ss_conf 989999----9999999999819979999998724699999985289883589999999754999999506
Q gi|254780424|r 9 NPVDIN----VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 (144)
Q Consensus 9 ~~~d~~----iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~ 75 (144)
.+.+.. +|+.|+++|+.+||||.+||+.+|||+++|++||+|.+.|+.+.|.+||++||||+++|+.
T Consensus 8 ~~~~~~~~~~l~~~l~~~R~~~glTQ~~lA~~lgis~~~is~~E~G~~~~s~~~l~~la~~l~v~~~~l~~ 78 (92)
T 1lmb_3 8 TQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSP 78 (92)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCH
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHH
T ss_conf 98999999999999999999929999999998847898999997799899999999999998987999976
No 34
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=99.45 E-value=8.9e-14 Score=107.07 Aligned_cols=64 Identities=17% Similarity=0.251 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 9999999999998199799999987246999999852898835899999997549999995067
Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144)
Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144)
..+|..++..|+++||||++||+++|+|.++|++||+|.+.|+.+.+.+||++||||+++|+..
T Consensus 11 ~~l~~~~~~~R~~~gltq~elA~~lgvs~~~is~~E~G~~~p~~~~l~~ia~~l~v~~~~~~~~ 74 (80)
T 3kz3_A 11 RRLKAIWEKKKNELGLSYESVADKMGMGQSAVAALFNGINALNAYNAALLAKILKVSVEEFSPS 74 (80)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTSCGGGTCHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHCHH
T ss_conf 9999999999999399999996620988988999987997899999999999989889998748
No 35
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=99.39 E-value=5.4e-13 Score=102.03 Aligned_cols=65 Identities=17% Similarity=0.095 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCC
Q ss_conf 999999999981997999999872469999998528988358999999975499999950677443
Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 (144)
Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~~ 80 (144)
||+++|++|+++||||+++|+. ++|++++|+||+|...||.+.|..||+.|||++++|+......
T Consensus 4 iG~~~k~~R~~~~ltq~~~a~~-~~s~s~ls~~E~g~~~~s~~~l~~l~~~l~v~~~ef~~~~~~~ 68 (317)
T 2awi_A 4 IGSVLKQIRQELNYHQIDLYSG-IMSKSVYIKVEADSRPISVEELSKFSERLGVNFFEILNRAGMN 68 (317)
T ss_dssp HHHHHHHHHHHTTCCHHHHHTT-TSCHHHHHHHHTTCSCCBHHHHHHHHHHHTSCHHHHHHHTTTC
T ss_pred HHHHHHHHHHHCCCCHHHHHHC-CCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCC
T ss_conf 8999999999879989999662-8999999999889987999999999998599999998553888
No 36
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=99.36 E-value=2.2e-13 Score=104.56 Aligned_cols=73 Identities=19% Similarity=0.286 Sum_probs=63.5
Q ss_pred CCCCHHHHHHHHHHHHH----HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf 68998999999999999----99819979999998724699999985289883589999999754999999506774
Q gi|254780424|r 6 KIPNPVDINVGKRIRLR----RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 (144)
Q Consensus 6 ~~~~~~d~~iG~rIr~~----R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~ 78 (144)
|+.-+-|...++|||++ |+++||||++||+.+|+++++|++||+|.+.|+.+.|.+||++|+|+++||+.+.+
T Consensus 5 ~~~~~~~~~~~~rLk~l~~~~r~e~Glsq~elA~~~Gis~~tis~~e~G~~~~~~~~l~~ia~~l~v~~~~l~~~~~ 81 (236)
T 3bdn_A 5 KPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILKVSVEEFSPSIA 81 (236)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTTTTSCCCHHHHHHTTTTTTSCGGGTCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHCEEEEEHHCCCCC
T ss_conf 98999999999999999999999839999999999797999998887285246799999752202785121103223
No 37
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=99.36 E-value=4e-13 Score=102.86 Aligned_cols=62 Identities=23% Similarity=0.221 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 99999999999981997999999872469999998528988358999999975499999950
Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 (144)
Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~ 74 (144)
..||++||++|+.+||||++||+.+||++++|++||+|...|+++.|.+||++||+++..++
T Consensus 9 ~~l~~~lk~~R~~~gltq~elA~~~gvs~~~is~~E~G~~~~s~~~l~~i~~~lg~~~~~~~ 70 (84)
T 2ef8_A 9 RCLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDALELFELLEVVASRLGLPM 70 (84)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBHHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCH
T ss_conf 99999999999994999999999974799999999879999999999999999489858539
No 38
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovarisraelensis atcc 35646}
Probab=99.34 E-value=3.1e-13 Score=103.59 Aligned_cols=65 Identities=28% Similarity=0.427 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCC
Q ss_conf 999999999999819979999998724699999985289883589999999754999999506774
Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 (144)
Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~ 78 (144)
.+||+.||.+|+++||||++||+.+ +|++++|+||+|++.|+.++|..||+.||||+++|+....
T Consensus 4 ~~iG~~lk~~R~~~~ltq~~la~~i-~S~s~lSkiE~g~~~ps~~~l~~l~~~l~i~~~~~~~~~~ 68 (293)
T 2qfc_A 4 EKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQIPIIHFYEVLI 68 (293)
T ss_dssp HHHHHHHHHHHHHHTCCTTTTTTTT-SCHHHHHHHHTSSSCCCHHHHHHHTTTSCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHCC-CCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 8999999999998799999985215-8999999998899999999999999885997899877775
No 39
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=99.32 E-value=1e-12 Score=100.31 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 99999999999819979999998724699999985289-88358999999975499999950
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFF 74 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~-~~ps~~~L~~iA~~l~v~~~~l~ 74 (144)
-+|.+||.+|+++||||.+||+++||++++||+||+|+ .+|+.++|.+||++||++++.++
T Consensus 18 ~L~~~Ir~~R~~~glTQ~elA~~~gvs~~~is~iE~G~~~~~s~~~L~~ia~aLg~~v~i~~ 79 (83)
T 2a6c_A 18 QLLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEINI 79 (83)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHTTCGGGCCHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 99999999999959999999999877899999998799999899999999999299638872
No 40
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=99.25 E-value=4e-12 Score=96.47 Aligned_cols=72 Identities=14% Similarity=0.245 Sum_probs=64.4
Q ss_pred CCCCCCCCCHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 99876689989999999999-99998199799999987246999999852898835899999997549999995067
Q gi|254780424|r 1 MVGNKKIPNPVDINVGKRIR-LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144)
Q Consensus 1 ~~~~~~~~~~~d~~iG~rIr-~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144)
|...+..| .|-|+-|+ ++...+||||.+||+.+|||+++|+.|++|+..|+.+...+||++||++++++++.
T Consensus 1 m~~~~r~P----~hPGeiL~~e~L~~~gisq~~LA~~lgvs~~~is~i~~Gk~~it~~~a~rL~~~fg~s~~~wl~l 73 (113)
T 2eby_A 1 MKQATRKP----TTPGDILLYEYLEPLDLKINELAELLHVHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLNL 73 (113)
T ss_dssp ------CC----CCHHHHHHHHTTTTTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCCCC----CCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHH
T ss_conf 98678999----58219999998876699999999996989999999993877899999999999989589999987
No 41
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=99.25 E-value=2.3e-12 Score=98.05 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHC
Q ss_conf 99999999999819979999998724699999985289883589999999754999999506
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~ 75 (144)
..|++||++|+.+||||++||+.+|||.++|++||+|.+.|+.. +.+++++|++++++|.+
T Consensus 11 ~~p~~ik~~R~~~gltQ~elA~~lgvs~~ti~~~E~G~~~P~~~-~~~l~~~l~~~P~~l~e 71 (73)
T 3fmy_A 11 VAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAXPHPS-TIKLLRVLDKHPELLNE 71 (73)
T ss_dssp CCHHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHTTSSCCCHH-HHHHHHHHHHCGGGHHH
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHH-HHHHHHHHCCCHHHHHH
T ss_conf 59999999999859999999999897999999999799799999-99999998779188887
No 42
>3g7d_A PHPD; non heme Fe(II) dioxygenase, cupin, biosynthetic protein; 1.80A {Streptomyces viridochromogenes} PDB: 3gbf_A
Probab=99.22 E-value=1.1e-11 Score=93.55 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=59.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHCCCCHHHHHCCCCC
Q ss_conf 9999999998199799999987246999999852-898835899999997549999995067744
Q gi|254780424|r 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISFFFDVSPT 79 (144)
Q Consensus 16 G~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~-G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~ 79 (144)
+.-||+.|+.+|||+++||++.|||.+++|++|+ |...|++++|.+||++|+|++.+||.....
T Consensus 232 ~slLk~~rk~RGLTL~eLAkrTGIS~S~LSqIERngks~PSl~tL~KIA~AL~V~lsdLf~~~~~ 296 (443)
T 3g7d_A 232 GSVLDLFLARRAHTRTSAAEAAGVPPADLEAALRSPASETGLTVLRTLGRALGFDYRVLLPADDQ 296 (443)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHCTTSHHHHHHHHHHHHHHTCCGGGGSCCCCC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHCCCCCC
T ss_conf 89999999971888999998869899999999856888988999999999729999997488776
No 43
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=99.16 E-value=5.3e-11 Score=89.29 Aligned_cols=64 Identities=6% Similarity=-0.022 Sum_probs=57.1
Q ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCC
Q ss_conf 999999998199-79999998724699999985289883589999999754999999506774431
Q gi|254780424|r 17 KRIRLRRMILGM-SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 (144)
Q Consensus 17 ~rIr~~R~~~gl-TQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~~~ 81 (144)
+.|+++|+..|+ ||.+||+++|||+++|++||+|.+.|+ +.+.+||++||++++||+.+.....
T Consensus 9 e~l~Rl~~~~g~~sq~eLA~~lGvs~stis~~e~~~~~p~-~~l~~ia~~~gv~~~~l~~~~~~~~ 73 (189)
T 2fjr_A 9 DVLDRICEAYGFSQKIQLANHFDIASSSLSNRYTRGAISY-DFAAHCALETGANLQWLLTGEGEAF 73 (189)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHTTCCHHHHHHHHHSSSCCH-HHHHHHHHHHCCCHHHHHHCCSCSC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCH-HHHHHHHHHHCCCHHHHCCCCCCCC
T ss_conf 9999999982998799999997979999999982899977-8999999880998345116654557
No 44
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=99.13 E-value=5.8e-11 Score=89.06 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH------HHHHHHHHCCCCHHHHHCC
Q ss_conf 999999999999819979999998724699999985289883589------9999997549999995067
Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS------RLQHISEVLESPISFFFDV 76 (144)
Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~------~L~~iA~~l~v~~~~l~~~ 76 (144)
..||++||+.|+.+||||++||+++|||.++|++||+|...+... .|.++|++||++++.++..
T Consensus 6 ~~iG~~Lr~~R~~~glS~~elA~~l~Is~~~l~~iE~g~~~~~~~~~~~~g~lr~ya~~Lgld~~~l~~~ 75 (112)
T 2wus_R 6 KELGETFRKKREERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELSPDEMLKL 75 (112)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHSSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 9999999999999699999999998568999999887895337652289999999999969799999999
No 45
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=99.08 E-value=6.8e-11 Score=88.60 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 99999999998199799999987246999999852898835899999997549999995067
Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144)
Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144)
.|.+||.+|+.+||||++||+.+|||+++|++||+|+..|+...+..| .++...|++++..
T Consensus 31 ~~~~ik~~R~~~gltq~~lA~~lgvs~~ti~~~E~G~~~P~~~~~~ll-~~i~~~Pe~~~~a 91 (99)
T 2ppx_A 31 RMPRIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYL-KIIAVDPEGTAAA 91 (99)
T ss_dssp -CCHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHH-HHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHH-HHHHCCHHHHHHH
T ss_conf 589999999995999999999969889999999889986999999999-9987497999999
No 46
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B*
Probab=99.01 E-value=1.3e-10 Score=86.89 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 99999999998199799999987246999999852898835899999997549999995
Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
-++.||.+|+.+||||++||+.+|+|.++|++||+|...|+... .++.++|+..+++|
T Consensus 72 ~~e~ir~~R~~~glsQ~elA~~lg~~~~ti~~~E~G~~~p~~~~-~~l~~~l~~~p~~l 129 (133)
T 3o9x_A 72 APEFIVKVRKKLSLTQKEASEIFGGGVNAFSRYEKGNAQPHPST-IKLLRVLDKHPELL 129 (133)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHCSCTTHHHHHHHTSSCCCHHH-HHHHHHHHHCGGGH
T ss_pred CHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHH-HHHHHHHCCCCHHH
T ss_conf 99999999998499999999995999999999986998899999-99999984385478
No 47
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=98.88 E-value=2.1e-09 Score=79.02 Aligned_cols=64 Identities=19% Similarity=0.247 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC--CC----HHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 9999999999981997999999872469999998528988--35----8999999975499999950677
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR--VG----ASRLQHISEVLESPISFFFDVS 77 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~--ps----~~~L~~iA~~l~v~~~~l~~~~ 77 (144)
.||++||+.|+++||||+++|++++|+.++|.++|+|... |+ ..-+..+|+.||+|+++++...
T Consensus 3 tiG~~Lr~~R~~~glSi~eva~~l~I~~~~l~aiE~g~~~~lp~~~~~~g~lr~ya~~L~ld~~~ll~~~ 72 (130)
T 3fym_A 3 TVGEALKGRRERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPNQLIQAH 72 (130)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 7999999999996999999999975149999999848854567708999999999999395999999999
No 48
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13
Probab=98.87 E-value=2.9e-09 Score=78.18 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHCCCCHHHHHC
Q ss_conf 999999999999819979999998724699999985289-883589999999754999999506
Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFFD 75 (144)
Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~-~~ps~~~L~~iA~~l~v~~~~l~~ 75 (144)
..++.+|+++|+++||||.++|+++|++++.||++|+|+ .+||+++|.+++.+||.+++--+.
T Consensus 39 ~~L~~~I~~~i~~~glTQ~eaA~~lGisq~~iS~l~~Gk~~~~Sld~L~~~~~~LG~~v~i~i~ 102 (120)
T 2o38_A 39 LRLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEIVIR 102 (120)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTCCTTCCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 9999999999998699675565550888899899975886788899999999985993899995
No 49
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=98.76 E-value=9.3e-09 Score=74.90 Aligned_cols=47 Identities=15% Similarity=0.049 Sum_probs=41.9
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 99999999819979999998724699999985289883589999999
Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 (144)
Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA 63 (144)
++|+.+|+..||||++||+.+|||+++|++||+|++.|.......+.
T Consensus 93 e~i~~~R~~~glsQ~~lA~~lGvs~~ti~~~E~G~r~ip~~i~La~l 139 (170)
T 2auw_A 93 EMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTAHKIIPRTIWLACL 139 (170)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHTSCHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99999999869999999999599999999997799999989999997
No 50
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=98.28 E-value=1.9e-06 Score=60.12 Aligned_cols=74 Identities=14% Similarity=0.111 Sum_probs=62.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHC
Q ss_conf 998766899899999999999999819979999998724699999985289883589999999754999999506
Q gi|254780424|r 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 (144)
Q Consensus 1 ~~~~~~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~ 75 (144)
|++.+=..|+- ..++++|...|.++|||++++|+.+|.|..++...+.|....+.+...++|.+|++|-+.+..
T Consensus 1 ~~~~~~~~~~r-~elte~Il~AK~~KGlTwe~IAe~vG~S~v~vaaa~lGQ~~l~~e~A~~l~~~LgL~~e~~~~ 74 (156)
T 1dw9_A 1 MIQSQINRNIR-LDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQQALPADAARLVGAKLDLDEDSILL 74 (156)
T ss_dssp CCCBCSCHHHH-HHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTSSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHCCCHH-HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHH
T ss_conf 91566562378-999999999999849999999999797999999998457779989999999854999999999
No 51
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=96.86 E-value=0.0014 Score=41.69 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=36.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 87668998999999999999998199799999987246999999852898
Q gi|254780424|r 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 (144)
Q Consensus 3 ~~~~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~ 52 (144)
|..+ .|.+ ..+|.+...+ ...|+||+++|+++|+|+++|+++-+--.
T Consensus 3 q~a~-~~~~-~E~g~~~~~l-~~~g~tQ~elAe~lg~Srs~Vsr~lrl~~ 49 (192)
T 1zx4_A 3 QTAL-QHSI-REIGLRLMRM-KNDGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp --CC-SSCH-HHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred CCCC-CCCH-HHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 4467-6869-9999999999-98599999999998879999999999986
No 52
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution; 1.40A {Xylella fastidiosa ann-1}
Probab=96.70 E-value=0.0012 Score=42.10 Aligned_cols=48 Identities=21% Similarity=0.149 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC--CCHHHHHCC
Q ss_conf 9799999987246999999852898835899999997549--999995067
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE--SPISFFFDV 76 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~--v~~~~l~~~ 76 (144)
=+|.+||+.+|||+++|++|-+|. .++.+....|+++.+ |+..+|...
T Consensus 12 G~q~~lAr~lGVsq~aVs~W~~~~-~vP~~~~~~Ie~aT~g~Vt~~eLrPD 61 (79)
T 3bd1_A 12 GSVSALAASLGVRQSAISNWRARG-RVPAERCIDIERVTNGAVICRELRPD 61 (79)
T ss_dssp SSHHHHHHHHTCCHHHHHHHHHHT-CCCGGGHHHHHHHTTTSSCHHHHCTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCC-CCCHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf 899999999299999999998469-99999999999997895319984955
No 53
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=96.17 E-value=0.019 Score=34.50 Aligned_cols=62 Identities=16% Similarity=0.268 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 99999999998199799999987246999999852898835899999997549999995067
Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144)
Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144)
+...+|--|..+.+|-+-+|+..|+|++++.++|...+.|-.-....+-..-||+...||+.
T Consensus 3 lsnelkverirlsltaksvaeemgisrqqlcnieqsetapvvvkyiaflrskgvdlnalfdr 64 (77)
T 2k9q_A 3 LSNELKVERIRLSLTAKSVAEEMGISRQQLCNIEQSETAPVVVKYIAFLRSKGVDLNALFDR 64 (77)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTCCSCCHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCEEEEEEEEEEHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 54201235667752267789984845988347411365773488899998638758999999
No 54
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=95.84 E-value=0.022 Score=34.10 Aligned_cols=57 Identities=14% Similarity=0.054 Sum_probs=45.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 999999981997999999872469999998528988358999999975499999950677
Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 (144)
Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~ 77 (144)
.|+..=..+|+|..+|+...|++.+++.+.-. .|...-=..||++|||++..++...
T Consensus 13 dI~AaL~krG~sLa~lsr~~Gls~~tl~nal~---rp~pkgEriIA~aLGv~P~eIWPsR 69 (74)
T 1neq_A 13 DVIAGLKKRKLSLSALSRQFGYAPTTLANALE---RHWPKGEQIIANALETKPEVIWPSR 69 (74)
T ss_dssp HHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTT---SSCHHHHHHHHHHTTSCHHHHCTTT
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHC---CCCCHHHHHHHHHHCCCHHHHCCCC
T ss_conf 99999999689699999990998899999882---7780799999999785988949665
No 55
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=95.62 E-value=0.0076 Score=37.01 Aligned_cols=45 Identities=9% Similarity=0.132 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCC---CC---HHHHHHHHHHCCCCHHH
Q ss_conf 97999999872469999998528988---35---89999999754999999
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEKGVNR---VG---ASRLQHISEVLESPISF 72 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~G~~~---ps---~~~L~~iA~~l~v~~~~ 72 (144)
+|..++|+.+|||.+|+|++-+|... ++ .+.+.++|+-||-.++.
T Consensus 1 vTlkdIA~~aGVS~sTVSrvLng~~~~~~Vs~~Tr~rV~~~a~~lgY~pn~ 51 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 979999999885999999998599987877999999999999998889799
No 56
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=95.58 E-value=0.012 Score=35.85 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=39.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH---HHHHHHHHCCCCHH
Q ss_conf 9819979999998724699999985289883589---99999975499999
Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS---RLQHISEVLESPIS 71 (144)
Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~---~L~~iA~~l~v~~~ 71 (144)
..+..|.+++|+.+|||.+|+|++-||....+-+ +..++|+-+|--++
T Consensus 7 ~~k~vTikdIA~~agVS~aTVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~pn 57 (344)
T 3kjx_A 7 TKRPLTLRDVSEASGVSEMTVSRVLRNRGDVSDATRARVLAAAKELGYVPN 57 (344)
T ss_dssp ---CCCHHHHHHHHCCCSHHHHHHHTTCSCCCHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 999976999999989599999999789899999999999999999599748
No 57
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=95.22 E-value=0.021 Score=34.19 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6899899999999999-9998199799999987246999999852
Q gi|254780424|r 6 KIPNPVDINVGKRIRL-RRMILGMSQEKLGECLGITFQQVQKYEK 49 (144)
Q Consensus 6 ~~~~~~d~~iG~rIr~-~R~~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144)
+..+++ ..|..-++ +-...|+||++||+++|+|+++|+++-+
T Consensus 22 r~lS~~--E~a~~y~rlL~~~~~~tq~eLA~~lG~Srs~VS~~L~ 64 (189)
T 3mky_B 22 RPTSAY--ERGQRYASRLQNEFAGNISALADAENISRKIITRCIN 64 (189)
T ss_dssp -CCCHH--HHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHH--HHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 989999--9999999999864388899999997979999999998
No 58
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A
Probab=95.02 E-value=0.029 Score=33.27 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHCCCCH
Q ss_conf 99799999987246999999852898835899---999997549999
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASR---LQHISEVLESPI 70 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~---L~~iA~~l~v~~ 70 (144)
..|.+++|+.+|||.+|+|++-||+...|.++ ..+.|+-||-.+
T Consensus 2 ~vTi~dIA~~aGVS~~TVSr~Ln~~~~vs~~tr~kV~~~a~elgY~p 48 (332)
T 2hsg_A 2 NVTIYDVAREASVSMATVSRVVNGNPNVKPSTRKKVLETIERLGYRP 48 (332)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHTTCTTSCHHHHHHHHHHHHHHTCCS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 76799999998979999999978959999999999999999968986
No 59
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=94.79 E-value=0.02 Score=34.28 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH-----CCCCCCCH--------HHHHHHHHHCCCC
Q ss_conf 9999999999999819979999998724699999985-----28988358--------9999999754999
Q gi|254780424|r 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-----KGVNRVGA--------SRLQHISEVLESP 69 (144)
Q Consensus 12 d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E-----~G~~~ps~--------~~L~~iA~~l~v~ 69 (144)
|.++=-++-.+=-..||||.|.|+++|+|++++|++- .|-..+++ +.=..|.+.||+.
T Consensus 6 ~~~ll~~vA~lYY~~g~tQ~eIA~~lgiSR~~VsRlL~~Ar~~GiV~I~I~~~~~~~~~Le~~L~~~fgL~ 76 (315)
T 2w48_A 6 DIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYDYNENLWLEQQLKQKFGLK 76 (315)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 99999999999982499999999987959999999999999759379999489744199999999972998
No 60
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=94.69 E-value=0.02 Score=34.29 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=39.1
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH---HHHHHHHHCCC-CHHH
Q ss_conf 99819979999998724699999985289883589---99999975499-9999
Q gi|254780424|r 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS---RLQHISEVLES-PISF 72 (144)
Q Consensus 23 R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~---~L~~iA~~l~v-~~~~ 72 (144)
|+.+.-|.+++|+++|||.+|+|+.-||....+-+ ++.++|+.||- .++.
T Consensus 5 ~~~~~~Tl~diA~~agVS~~TVsraLn~~~~vs~~tr~rV~~~a~~lgY~~pn~ 58 (366)
T 3h5t_A 5 RKQQYGTLASIAAKLGISRTTVSNAYNRPEQLSAELRQRILDTAEDMGYLGPDP 58 (366)
T ss_dssp --CCTTHHHHHHHHHTSCHHHHHHHHHCGGGSCHHHHHHHHHHHHHTTC-----
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCH
T ss_conf 999986399999998879999999968989999999999999999839999898
No 61
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=94.57 E-value=0.044 Score=32.16 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98999999999999998199799999987246999999852898835
Q gi|254780424|r 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 (144)
Q Consensus 9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps 55 (144)
+|+| ++.-++.+-. .|+||+++|+++|.|.++|+++-.=...|.
T Consensus 37 ~~~e--~A~~~~~l~~-~g~t~~~iA~~lg~s~~~V~~~l~l~~lp~ 80 (178)
T 1r71_A 37 TPRE--IADFIGRELA-KGKKKGDIAKEIGKSPAFITQHVTLLDLPE 80 (178)
T ss_dssp CHHH--HHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHGGGSCCH
T ss_pred CHHH--HHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHCCCCH
T ss_conf 9999--9999999998-178899999996999999999999806999
No 62
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription/DNA complex; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=94.49 E-value=0.026 Score=33.57 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 199799999987246999999852898835899999997549999995
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
.-.+|..+|+.+||+.|+||+|-+|. -|.+..|....+ |+|+++++
T Consensus 23 a~~Gq~~vA~~~Gv~eStISRwK~~~-~~k~a~lLA~Le-~~v~d~e~ 68 (83)
T 1zs4_A 23 AMLGTEKTAEAVGVDKSQISRWKRDW-IPKFSMLLAVLE-WGVVDDDM 68 (83)
T ss_dssp HHHCHHHHHHHHTSCHHHHHHHHHHT-HHHHHHHHHHHT-TCCCHHHH
T ss_pred HHHCCHHHHHHHCCCHHHHHHHCCCH-HHHHHHHHHHHC-CCCCCHHH
T ss_conf 98552999999699899987301347-999999999973-79992999
No 63
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=94.37 E-value=0.032 Score=33.02 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHCCC--CHHHHHHHHHH-HHHHHHHHH
Q ss_conf 9999999999998199--79999998724-699999985
Q gi|254780424|r 13 INVGKRIRLRRMILGM--SQEKLGECLGI-TFQQVQKYE 48 (144)
Q Consensus 13 ~~iG~rIr~~R~~~gl--TQ~eLA~~lGv-s~s~is~~E 48 (144)
..|=++|++++.+.|+ |+.|+|+.+|+ |++++++|-
T Consensus 9 ~~il~~I~~~~~~~g~~PS~~Eia~~~GikS~s~v~~~l 47 (202)
T 1jhf_A 9 QEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHL 47 (202)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHH
T ss_conf 999999999999829896699999984999728999999
No 64
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=94.12 E-value=0.13 Score=29.21 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 999999999998199799999987246999999852898835899
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~ 58 (144)
.+...||......|++|..+|..+|+|.++|+.++++....+...
T Consensus 31 ~~a~eIk~~L~~~~i~q~~~~~~~g~SqSsiS~~L~~~~~~~~~k 75 (221)
T 2h8r_A 31 RAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNKGTPMKTQK 75 (221)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHTTCCCCCHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHCCCCCHHHHC
T ss_conf 999999999986698455530012444437889871898534402
No 65
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=93.94 E-value=0.065 Score=31.05 Aligned_cols=44 Identities=9% Similarity=0.006 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHCCCCHHH
Q ss_conf 799999987246999999852898835899---99999754999999
Q gi|254780424|r 29 SQEKLGECLGITFQQVQKYEKGVNRVGASR---LQHISEVLESPISF 72 (144)
Q Consensus 29 TQ~eLA~~lGvs~s~is~~E~G~~~ps~~~---L~~iA~~l~v~~~~ 72 (144)
|.+++|+.+|||.+|+|+.-||...+|-++ ..++|+-+|-.++.
T Consensus 2 Ti~DIA~~aGVS~~TVSraLn~~~~vs~~tr~rV~~~a~elgY~pn~ 48 (340)
T 1qpz_A 2 TIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSA 48 (340)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTCSCCCHHHHHHHHHHHHHHTCCCCH
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 68999999896999999996797999999999999999995898898
No 66
>2ox6_A Hypothetical protein SO3848; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 1.70A {Shewanella oneidensis mr-1} SCOP: a.35.1.6
Probab=93.53 E-value=0.28 Score=27.02 Aligned_cols=67 Identities=18% Similarity=0.342 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH---HHHHHHHHHC-----CCC--HHHHHCCC
Q ss_conf 9989999999999999981997999999872469999998528988358---9999999754-----999--99950677
Q gi|254780424|r 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA---SRLQHISEVL-----ESP--ISFFFDVS 77 (144)
Q Consensus 8 ~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~---~~L~~iA~~l-----~v~--~~~l~~~~ 77 (144)
-|+| .|+.+|..+|||.+++|+..+.|..-+-.||.|....+. ..|..|-++. |+. +..||...
T Consensus 7 lnai------ei~ylr~slglt~aqv~e~~k~se~dv~aweage~~~~~laqkklleide~iemqvlnt~dgieelfkke 80 (166)
T 2ox6_A 7 LNAI------EMSYLRQSLSLSAAQVGQLTNHSEAEVLAWENAETQAPELAQKKLLDIDDIIEMQVLNTTDGIEALFKKE 80 (166)
T ss_dssp CCHH------HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCHH------HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC
T ss_conf 3157------5999999707889998887445777755355068868607787551088888887752242099997418
Q ss_pred CCC
Q ss_conf 443
Q gi|254780424|r 78 PTV 80 (144)
Q Consensus 78 ~~~ 80 (144)
+..
T Consensus 81 pkr 83 (166)
T 2ox6_A 81 PKR 83 (166)
T ss_dssp CCS
T ss_pred CCC
T ss_conf 430
No 67
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=92.82 E-value=0.016 Score=34.99 Aligned_cols=48 Identities=8% Similarity=0.102 Sum_probs=38.3
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH---HHHHHHHHHCCCCHHH
Q ss_conf 81997999999872469999998528988358---9999999754999999
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGA---SRLQHISEVLESPISF 72 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~---~~L~~iA~~l~v~~~~ 72 (144)
.+..|.+++|+.+|||.+|+|++-||....+. .++.++|+-||-.++.
T Consensus 10 ~k~vTikdIA~~aGVS~~TVSr~Ln~~~~Vs~~Tr~rV~~~a~elgY~pn~ 60 (355)
T 3e3m_A 10 HRPVTMRDVAKAAGVSRMTVSRALKKDSPISSETRERILKVVKDMNYVPDQ 60 (355)
T ss_dssp ---------------------------------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCH
T ss_conf 999769999999885999999996898999999999999999995997388
No 68
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=92.70 E-value=0.077 Score=30.58 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=27.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999819979999998724699999985289
Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 (144)
Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~ 51 (144)
+.+++++ ..|.|..++|+.+|||++||.+|-...
T Consensus 12 ~~a~~l~-~~G~s~~~iA~~~gVsr~TlYrylp~~ 45 (52)
T 1jko_C 12 EQISRLL-EKGHPRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp HHHHHHH-HTTCCHHHHHHTTSCCHHHHHHHSCTT
T ss_pred HHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHCCCH
T ss_conf 9999999-978989999999797999999985130
No 69
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=92.47 E-value=0.019 Score=34.52 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=38.7
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH---HHHHHHHCCCCHHHH
Q ss_conf 8199799999987246999999852898835899---999997549999995
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR---LQHISEVLESPISFF 73 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~---L~~iA~~l~v~~~~l 73 (144)
..+.|.+++|+.+|||.+|+|++-||+...+.++ +.++|+-||-.++..
T Consensus 2 ~m~vTi~dIA~~aGVS~~TVSraLn~~~~Vs~~tr~rI~~~a~~lgY~pn~~ 53 (339)
T 3h5o_A 2 SLGVTMHDVAKAAGVSAITVSRVLNQPQQVSEQLREKVMQAVDALAYVPSRS 53 (339)
T ss_dssp ----------------------------------------------------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHH
T ss_conf 9731199999998979999999968989999999999999999978975888
No 70
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: a.35.1.6
Probab=92.37 E-value=0.26 Score=27.20 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=41.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999981997999999872--46999999852898835899999997
Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISE 64 (144)
Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lG--vs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144)
--|..+|+..-||-.|-|.-++ ++..+..+||+|...+..+.+..+..
T Consensus 6 ~ELqalR~if~m~v~EaA~~I~~~~~s~tWQ~WE~G~~~IP~~Vi~~~~~ 55 (120)
T 1s4k_A 6 LELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKE 55 (120)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTSSSCCHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf 99999999999539999999965776899999975897899999999999
No 71
>1jhg_A Trp operon repressor; complex (regulatory protein/peptide), DNA-binding regulatory protein; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 1trr_A* 1tro_A*
Probab=92.23 E-value=0.16 Score=28.54 Aligned_cols=38 Identities=26% Similarity=0.464 Sum_probs=32.4
Q ss_pred HHHHHHHHHHH-HCC-CCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999-819-979999998724699999985289
Q gi|254780424|r 14 NVGKRIRLRRM-ILG-MSQEKLGECLGITFQQVQKYEKGV 51 (144)
Q Consensus 14 ~iG~rIr~~R~-~~g-lTQ~eLA~~lGvs~s~is~~E~G~ 51 (144)
.+++|++-++. ..| +||.++|+.+|||..||++.-+--
T Consensus 43 ~la~R~~ia~~L~~g~~s~reI~~~~gvS~aTItR~s~~L 82 (101)
T 1jhg_A 43 ALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSL 82 (101)
T ss_dssp HHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999999999089579999999698657778989998
No 72
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=91.87 E-value=0.16 Score=28.61 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf 199799999987246999999852898835899999997549
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~ 67 (144)
.| +|..||+.+|||+++|++| |. .+...+-..|-.+-+
T Consensus 10 fG-~~~~lA~~lgIs~~aVsqW--g~-~VP~~ra~~iE~~T~ 47 (61)
T 1rzs_A 10 FG-TQRAVAKALGISDAAVSQW--KE-VIPEKDAYRLEIVTA 47 (61)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHC--CS-BCCHHHHHHHHHHTT
T ss_pred HC-CHHHHHHHHCCCHHHHHHC--CC-CCCHHHHHHHHHHHC
T ss_conf 68-9999999969999999874--77-798999999999959
No 73
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=91.74 E-value=0.22 Score=27.68 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=31.5
Q ss_pred HHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999-81997999999872469999998528
Q gi|254780424|r 14 NVGKRIRLRRM-ILGMSQEKLGECLGITFQQVQKYEKG 50 (144)
Q Consensus 14 ~iG~rIr~~R~-~~glTQ~eLA~~lGvs~s~is~~E~G 50 (144)
.+++|+.-.+. ..|.||.++|+.+|||.+||+++-+-
T Consensus 44 ~la~R~~va~lL~~g~syreIa~~~gvS~aTIsRv~r~ 81 (107)
T 3frw_A 44 SLSQRFEVAKMLTDKRTYLDISEKTGASTATISRVNRS 81 (107)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999886999999999969874758999999
No 74
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=91.72 E-value=0.026 Score=33.61 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH---HHHHHHHHHCCCCHHHH
Q ss_conf 1997999999872469999998528988358---99999997549999995
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGA---SRLQHISEVLESPISFF 73 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~---~~L~~iA~~l~v~~~~l 73 (144)
..-|..++|+++|||.+|+|++-||...++- .+..++|+-||-.++..
T Consensus 7 ~r~Ti~dIA~~aGVS~~TVSr~Ln~~~~Vs~~tr~rV~~~a~~lgY~pn~~ 57 (348)
T 3bil_A 7 FRPTLKDVARQAGVSIATASRALADNPAVAASTRERIQQLASDLGYRANAQ 57 (348)
T ss_dssp ---------------------------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHH
T ss_conf 997399999998869999999968989999999999999999958987988
No 75
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=91.26 E-value=0.27 Score=27.08 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 8998999999999999998199799999987246999999852898835899999997549999
Q gi|254780424|r 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 (144)
Q Consensus 7 ~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~ 70 (144)
..+|+|.. .-++.+ ...|+|++++|+++|+|.++|+++-.=..-| -+.+..+.. =.++.
T Consensus 117 ~lsp~e~a--~~~~~l-~~~g~t~~~iA~~lg~s~~~V~~~l~L~~Lp-~~i~~~~~~-g~it~ 175 (230)
T 1vz0_A 117 DLSPVEEA--RGYQAL-LEMGLTQEEVARRVGKARSTVANALRLLQLP-PEALEALER-GEITA 175 (230)
T ss_dssp TCCHHHHH--HHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHGGGSC-HHHHHHHHT-TSSCH
T ss_pred CCCHHHHH--HHHHHH-HHHCCCHHHHHHHHCCCHHHHHHHHHHHCCC-HHHHHHHHC-CCCCH
T ss_conf 89889999--999999-8841899999988099999999999875189-999999985-99998
No 76
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=91.20 E-value=0.52 Score=25.28 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99899999999999999819979999998724699999985289
Q gi|254780424|r 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 (144)
Q Consensus 8 ~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~ 51 (144)
+++-...+=++|-+++. .|+|..++|+.+|||++|+.+|-+..
T Consensus 157 ~~~~~~~~v~~I~~l~~-~G~s~~~IA~~l~is~~Tv~R~l~~~ 199 (209)
T 2r0q_C 157 KDPQKRVIYHRVVEMLE-EGQAISKIAKEVNITRQTVYRIKHDN 199 (209)
T ss_dssp SSHHHHHHHHHHHHHHH-TTCCHHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHC
T ss_conf 14999999999999998-75999999999896999999999977
No 77
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=91.13 E-value=0.2 Score=27.97 Aligned_cols=35 Identities=11% Similarity=0.234 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999981997999999872469999998528
Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 (144)
Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G 50 (144)
.=.+|-.++ ..|+|+.++|..+|+|.++|++|-+-
T Consensus 11 ~R~~I~~l~-~~G~s~~~IAk~lg~s~stV~r~lk~ 45 (141)
T 1u78_A 11 ERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp HHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred HHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999-97999999999989578999999997
No 78
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=91.00 E-value=0.034 Score=32.86 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH---HHHHHHHHHCCCCHHHH
Q ss_conf 1997999999872469999998528988358---99999997549999995
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGA---SRLQHISEVLESPISFF 73 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~---~~L~~iA~~l~v~~~~l 73 (144)
+..|-+++|+++|||.+|+|++-||....|- ++..++|+-+|-.++..
T Consensus 2 kk~Ti~dIA~~aGVS~sTVSraLn~~~~Vs~~tr~rV~~~a~~lgY~pn~~ 52 (349)
T 1jye_A 2 KPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPNRV 52 (349)
T ss_dssp ---------------------------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHH
T ss_conf 977699999998869999999967969999999999999999978985888
No 79
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=90.75 E-value=0.29 Score=26.86 Aligned_cols=37 Identities=11% Similarity=0.336 Sum_probs=31.3
Q ss_pred HHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999-81997999999872469999998528
Q gi|254780424|r 14 NVGKRIRLRRM-ILGMSQEKLGECLGITFQQVQKYEKG 50 (144)
Q Consensus 14 ~iG~rIr~~R~-~~glTQ~eLA~~lGvs~s~is~~E~G 50 (144)
.+++|+.-.+. ..|.||.++|+.+|+|.+||+++-+-
T Consensus 61 ~la~R~~Va~lL~~g~syreIa~~tgvS~aTIsRV~r~ 98 (119)
T 3kor_A 61 SLSQRLQVAKMIKQGYTYATIEQESGASTATISRVKRS 98 (119)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999999885999999999969874547999999
No 80
>3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=90.71 E-value=0.038 Score=32.58 Aligned_cols=46 Identities=13% Similarity=0.127 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCH---HHHHHHHHHCCCCHHHH
Q ss_conf 97999999872469999998528988358---99999997549999995
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEKGVNRVGA---SRLQHISEVLESPISFF 73 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~G~~~ps~---~~L~~iA~~l~v~~~~l 73 (144)
-|-.++|++.|||.+|+|++-||...++- +++.++|+-||-.++..
T Consensus 4 ~Ti~DIA~~aGVS~~TVSrvLn~~~~vs~~tr~rI~~~a~elgY~pn~~ 52 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESGYRPNLL 52 (338)
T ss_dssp -------------------------------------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHH
T ss_conf 8899999997979999999968979999999999999999948987878
No 81
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=90.41 E-value=0.12 Score=29.33 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=25.6
Q ss_pred HHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999---8199799999987246999999852
Q gi|254780424|r 18 RIRLRRM---ILGMSQEKLGECLGITFQQVQKYEK 49 (144)
Q Consensus 18 rIr~~R~---~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144)
+++.++. .-|.|..++|..+|||.++|++|-+
T Consensus 11 K~~aV~l~~~~~g~s~~~vA~~~GIs~~tl~~W~k 45 (97)
T 2jn6_A 11 KRDAVALYENSDGASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp HHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHH
T ss_conf 99999999984998599999997899574468999
No 82
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=89.98 E-value=0.63 Score=24.74 Aligned_cols=43 Identities=7% Similarity=-0.063 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCCCCH
Q ss_conf 999999999998199799999987-2469999998528988358
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGA 56 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G~~~ps~ 56 (144)
.|.++|++.=+..+++|+-||+.+ |.|+.++|.+-+.+..|.-
T Consensus 21 ~ia~~i~~eL~~~~I~Q~~FAk~VL~rSQGtLSdLLr~~~~PkP 64 (101)
T 2csf_A 21 AIYDEIQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSP 64 (101)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHTCCCHHHHHHHHHHCCCCCT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCC
T ss_conf 99999999999848659999999980171179999846479997
No 83
>3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf}
Probab=89.60 E-value=0.053 Score=31.64 Aligned_cols=45 Identities=13% Similarity=0.242 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCH---HHHHHHHHHCCCCHHHH
Q ss_conf 7999999872469999998528988358---99999997549999995
Q gi|254780424|r 29 SQEKLGECLGITFQQVQKYEKGVNRVGA---SRLQHISEVLESPISFF 73 (144)
Q Consensus 29 TQ~eLA~~lGvs~s~is~~E~G~~~ps~---~~L~~iA~~l~v~~~~l 73 (144)
|.+++|++.|||.+|+|++-||...+|. ++..++|+.+|--++..
T Consensus 4 tikdIA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY~pn~~ 51 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNNTGYVSEDAREKIQKVVDELNYTPNAL 51 (330)
T ss_dssp ------------------------------------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHH
T ss_conf 899999998969999999968979999999999999999958987988
No 84
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=89.52 E-value=0.34 Score=26.41 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999981997999999872469999998
Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
...+.-++.+|...++|..|||+.+|+|++|++++
T Consensus 16 ~N~~~Il~~i~~~g~iSR~ela~~~gls~~Tvs~i 50 (406)
T 1z6r_A 16 TNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKI 50 (406)
T ss_dssp HHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999859918999998879599999999
No 85
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=89.22 E-value=0.6 Score=24.88 Aligned_cols=34 Identities=18% Similarity=-0.078 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998199--799999987246999999
Q gi|254780424|r 13 INVGKRIRLRRMILGM--SQEKLGECLGITFQQVQK 46 (144)
Q Consensus 13 ~~iG~rIr~~R~~~gl--TQ~eLA~~lGvs~s~is~ 46 (144)
..|=+.|+.++.+.|+ |++|+|+.+|+|.++...
T Consensus 8 ~~il~~I~~~~~~~G~~PS~reIa~~~Giss~s~v~ 43 (196)
T 3k2z_A 8 RKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALL 43 (196)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHH
T ss_conf 999999999999849896699999982999645788
No 86
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228}
Probab=88.96 E-value=0.53 Score=25.23 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH-HHHHHH
Q ss_conf 8999999999999-9981997999999872469999998528988358999-999975
Q gi|254780424|r 10 PVDINVGKRIRLR-RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL-QHISEV 65 (144)
Q Consensus 10 ~~d~~iG~rIr~~-R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L-~~iA~~ 65 (144)
+-+..|++.|..- ..-..+|..+||+.+|||.++|.++.+--.--....+ ..+++.
T Consensus 17 ~se~~Ia~yil~~~~~i~~~si~elA~~~~VS~aTi~Rf~kklGf~gf~dfk~~l~~~ 74 (107)
T 3iwf_A 17 KNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRLSKF 74 (107)
T ss_dssp HHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 9999999999959999977659999989798998999999995889899999999999
No 87
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} SCOP: a.4.1.17
Probab=88.68 E-value=0.22 Score=27.61 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC-CCCCCC
Q ss_conf 199799999987246999999852-898835
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEK-GVNRVG 55 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~-G~~~ps 55 (144)
...||+++|+.+|||++++.+|-+ ++..+.
T Consensus 47 ~k~T~~eiAeEvGvsr~TLy~Wk~qnk~Fi~ 77 (155)
T 2ao9_A 47 EKRTQDEMANELGINRTTLWEWRTKNQDFIA 77 (155)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHCCHHHHH
T ss_conf 3647999999957469999988605877999
No 88
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=88.60 E-value=0.0085 Score=36.73 Aligned_cols=46 Identities=26% Similarity=0.331 Sum_probs=32.2
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCC-HHHHHHHHHHCCCCH
Q ss_conf 81997999999872469999998528-98835-899999997549999
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKG-VNRVG-ASRLQHISEVLESPI 70 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G-~~~ps-~~~L~~iA~~l~v~~ 70 (144)
++||||.|.|+.+|.|++.||.+|+. ..++. ...=.++.+.++-|+
T Consensus 3 ~kG~tQ~eIA~~LgTSraNVs~IEk~A~eNIekAreTl~~~~~l~Ap~ 50 (122)
T 1nr3_A 3 ERGWSQKKIARELKTTRQNVSAIERKAMENIEKSRNTLDFVKSLKSPV 50 (122)
T ss_dssp CCSCSSCSTHHHHHHCCSSSCCHHHHHHTTCSSSSCHHHHHHHHCCCE
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 257879999999777588999999999999999999999999768988
No 89
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=88.46 E-value=0.73 Score=24.32 Aligned_cols=36 Identities=8% Similarity=0.040 Sum_probs=29.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999998199799999987246999999852898
Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 (144)
Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~ 52 (144)
+-|..++...++|+.++|+..||+.+||++|-+++.
T Consensus 15 ~vi~~~~~~~~~~~~~iAk~fgv~~sTi~~~~k~k~ 50 (131)
T 1hlv_A 15 RIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKR 50 (131)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHTHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999977888899999998919999999992479
No 90
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=88.23 E-value=0.67 Score=24.58 Aligned_cols=40 Identities=23% Similarity=0.152 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6899899999999999999819979999998724699999985
Q gi|254780424|r 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE 48 (144)
Q Consensus 6 ~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E 48 (144)
+.|-++| +=++|-++- ..|+++.++|.++|||++++++|-
T Consensus 30 GrPLs~d--lR~rIV~~~-~~G~s~r~IArrf~VS~stV~kii 69 (149)
T 1k78_A 30 GRPLPDV--VRQRIVELA-HQGVRPCDISRQLRVSHGCVSKIL 69 (149)
T ss_dssp TSCCCHH--HHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCCHH--HHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9079899--999999999-969999999998894999999999
No 91
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=88.15 E-value=0.076 Score=30.62 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH---HHHHHHHHHCCCCHHHH
Q ss_conf 1997999999872469999998528988358---99999997549999995
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGA---SRLQHISEVLESPISFF 73 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~---~~L~~iA~~l~v~~~~l 73 (144)
...|..++|+..|||.+|+|++-||...++- .+..++|+-||--++.+
T Consensus 5 ~k~Ti~diA~~aGVS~aTVSr~Ln~~~~Vs~~tr~rV~~aae~lgY~pn~~ 55 (333)
T 3jvd_A 5 AKSSLKEVAELAGVGYATASRALSGKGYVSPQTREKVQAAAKELNYVPNQL 55 (333)
T ss_dssp ---------------------------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHH
T ss_conf 998799999998979999999968979999999999999999959973888
No 92
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis}
Probab=88.09 E-value=0.077 Score=30.58 Aligned_cols=48 Identities=10% Similarity=0.123 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH---HHHHHHHHCCCCHHHH
Q ss_conf 19979999998724699999985289883589---9999997549999995
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGAS---RLQHISEVLESPISFF 73 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~---~L~~iA~~l~v~~~~l 73 (144)
.-.|-+++|+..|||.+|+|+.-||....+.+ +...+|+-||-.++..
T Consensus 4 ~~~Ti~DIA~~aGVS~~TVSraLn~~~~vs~~tr~rV~~~a~~lgY~pn~~ 54 (332)
T 2o20_A 4 STTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLEAIAELDYRPNAV 54 (332)
T ss_dssp ---------------------------------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHH
T ss_conf 987699999997979999999968969999999999999999958976888
No 93
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=88.06 E-value=0.4 Score=25.98 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=9.8
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999998724699999985
Q gi|254780424|r 29 SQEKLGECLGITFQQVQKYE 48 (144)
Q Consensus 29 TQ~eLA~~lGvs~s~is~~E 48 (144)
|.+++|..+|++...+..+.
T Consensus 117 t~~e~a~~l~~~~~~~~~~l 136 (239)
T 1rp3_A 117 TDEEVAKELGISTEELFKTL 136 (239)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHCCCCCHHHHHHHH
T ss_conf 99999541499899999998
No 94
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=88.03 E-value=0.77 Score=24.16 Aligned_cols=34 Identities=18% Similarity=0.142 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999981997999999872469999998
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
+-..-++.+|....+|..|||+.+|+|++|++++
T Consensus 40 N~~~il~~i~~~g~iSR~ela~~tgLS~~Tvs~i 73 (429)
T 1z05_A 40 NAGRVYKLIDQKGPISRIDLSKESELAPASITKI 73 (429)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999999849918999998879599999999
No 95
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=87.34 E-value=0.91 Score=23.71 Aligned_cols=44 Identities=9% Similarity=0.112 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 99999999998199799999987246999999852898835899
Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 (144)
Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~ 58 (144)
+-..||..+...|++|..++..+|+|.++|+.+++.....+...
T Consensus 31 ~a~~Ik~~l~~~~i~q~~~~~~~~~Sqs~is~~l~~~~~~~~~~ 74 (194)
T 1ic8_A 31 VAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKGTPMKTQK 74 (194)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSBCCCCHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999998289953356566778654022456899866556
No 96
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription/DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=86.68 E-value=0.68 Score=24.51 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHCCCC-----CCCHHHHHHHHHHCCCCHHHH
Q ss_conf 99999999999819979999998-7246999999852898-----835899999997549999995
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGEC-LGITFQQVQKYEKGVN-----RVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~-lGvs~s~is~~E~G~~-----~ps~~~L~~iA~~l~v~~~~l 73 (144)
.|-++|+...+..+++|..+|+. +|.|.+++|.+-+.-. .+.-+.+.++..-+..+...-
T Consensus 8 ~ia~~Ik~~L~~~~I~Q~~fa~~vlg~SQ~tLS~lL~~pkpw~~l~~~re~~~Rm~~w~~~~~~~~ 73 (164)
T 2d5v_A 8 EVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQR 73 (164)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTSCCHHHHHHHHHSCCCGGGCSTTHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 999999999988799789999998457888999987189985763737699999998851560257
No 97
>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8
Probab=86.09 E-value=0.12 Score=29.43 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=32.7
Q ss_pred CCCHHHHHHHH--HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-----HCCCCCCC
Q ss_conf 89989999999--999999981997999999872469999998-----52898835
Q gi|254780424|r 7 IPNPVDINVGK--RIRLRRMILGMSQEKLGECLGITFQQVQKY-----EKGVNRVG 55 (144)
Q Consensus 7 ~~~~~d~~iG~--rIr~~R~~~glTQ~eLA~~lGvs~s~is~~-----E~G~~~ps 55 (144)
.|..+|.+-=+ -++.+-..-|+||.++|+++|+|+++++++ |.|-..++
T Consensus 12 ~p~~~~~~~~R~~il~~lyy~~~~~q~~IA~~lg~Sr~~V~r~l~~ar~~GiV~i~ 67 (345)
T 2o0m_A 12 APDMLDVLQERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQLNLIEPS 67 (345)
T ss_dssp --------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 52899999999999999988489799999988499775999999999987977996
No 98
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=85.34 E-value=0.77 Score=24.16 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 6899899999999999999819979999998724699999985289
Q gi|254780424|r 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 (144)
Q Consensus 6 ~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~ 51 (144)
..|-+.| +=++|-++ -..|++..++|.++|||.+++++|-.-.
T Consensus 23 GrPLp~~--lR~rIv~l-~~~G~s~r~IArrl~VS~stV~kil~R~ 65 (159)
T 2k27_A 23 GRPLPEV--VRQRIVDL-AHQGVRPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp SCSSCHH--HHHHHHHH-HHHTCCHHHHHHHHTCCSHHHHHHHCCS
T ss_pred CCCCCHH--HHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 8329899--99999999-9869999999998895999999999999
No 99
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=85.00 E-value=0.72 Score=24.38 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=26.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999999998199799999987246999999
Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144)
+-|..+...-++|+.++|+.+|++++++++
T Consensus 156 ~iL~~L~~~~~~s~~ela~~l~~s~~tv~r 185 (244)
T 2wte_A 156 KLLNVLYETKGTGITELAKMLDKSEKTLIN 185 (244)
T ss_dssp HHHHHHHHHTCBCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999977998999999997979889999
No 100
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=84.41 E-value=1 Score=23.34 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999981------9979999998724699999985
Q gi|254780424|r 15 VGKRIRLRRMIL------GMSQEKLGECLGITFQQVQKYE 48 (144)
Q Consensus 15 iG~rIr~~R~~~------glTQ~eLA~~lGvs~s~is~~E 48 (144)
...-|+.++... ++||.+||+.+|+|+++++++-
T Consensus 9 ~~~aLk~L~~~~~~~~~~~ls~~eLa~~l~is~~tvsr~l 48 (230)
T 3cta_A 9 YYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRII 48 (230)
T ss_dssp HHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999997364157998589999999887888999999
No 101
>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=84.28 E-value=1.1 Score=23.26 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 998999999999999998199799999987246999999
Q gi|254780424|r 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 8 ~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144)
=+.+|+. =|+.+...-.+|..++|+++|+|.+++.+
T Consensus 5 lD~~D~~---IL~~L~~d~R~s~~~iA~~lglS~~tv~~ 40 (151)
T 2cyy_A 5 LDEIDKK---IIKILQNDGKAPLREISKITGLAESTIHE 40 (151)
T ss_dssp CCHHHHH---HHHHHHHCTTCCHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 7289999---99999984899999999998919999999
No 102
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=84.18 E-value=0.73 Score=24.33 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=24.8
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9819979999998724699999985289
Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKGV 51 (144)
Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G~ 51 (144)
.+.|.++.++|..+||+.++|.+|-+..
T Consensus 35 ~e~G~s~~~vAre~gi~~stl~~W~k~~ 62 (87)
T 2elh_A 35 IHDGESKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp HHHTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9879999999999797998999999999
No 103
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=83.88 E-value=1.1 Score=23.13 Aligned_cols=11 Identities=0% Similarity=0.489 Sum_probs=3.8
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780424|r 119 IIELVRSIVSS 129 (144)
Q Consensus 119 i~~l~~~l~~~ 129 (144)
+..++..++..
T Consensus 107 ~~~i~~~~ae~ 117 (183)
T 1gdt_A 107 VVTILSAVAQA 117 (183)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 67788877999
No 104
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=83.09 E-value=2.3 Score=21.10 Aligned_cols=39 Identities=10% Similarity=0.035 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCC
Q ss_conf 999999999998199799999987-246999999852898
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVN 52 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G~~ 52 (144)
.|-++|++.-+..+++|+-||+.+ |.|+.+++.+-+.-.
T Consensus 21 eI~~~v~~eL~~~~IsQ~~Fa~~vL~rSQGtlSdLL~~PK 60 (101)
T 1wiz_A 21 DIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKEE 60 (101)
T ss_dssp THHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 9999999999995987999999997538288999995799
No 105
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=82.40 E-value=1.4 Score=22.54 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH-HHHHH
Q ss_conf 899999999999999-81997999999872469999998528988358999-99997
Q gi|254780424|r 10 PVDINVGKRIRLRRM-ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL-QHISE 64 (144)
Q Consensus 10 ~~d~~iG~rIr~~R~-~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L-~~iA~ 64 (144)
+-...|.+.|-.-.. -..+|..+||+++|||.++|.++.+--.--.+.-+ ..+++
T Consensus 21 ~~E~~Ia~yil~n~~~v~~~si~elA~~~~vS~aTI~Rf~kklGf~gf~efk~~l~~ 77 (111)
T 2o3f_A 21 PSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLKGFQDLXMRVAG 77 (111)
T ss_dssp HHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 999999999995924764378999998979898799999999277989999999999
No 106
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=82.39 E-value=2.5 Score=20.93 Aligned_cols=47 Identities=19% Similarity=0.379 Sum_probs=35.7
Q ss_pred CCHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHCCCCCC
Q ss_conf 9989999-9999999999819979999998724------699999985289883
Q gi|254780424|r 8 PNPVDIN-VGKRIRLRRMILGMSQEKLGECLGI------TFQQVQKYEKGVNRV 54 (144)
Q Consensus 8 ~~~~d~~-iG~rIr~~R~~~glTQ~eLA~~lGv------s~s~is~~E~G~~~p 54 (144)
+++-+++ ..+.++..|..+|+||.+++..+|. |.++++..|.-...+
T Consensus 4 ~d~~ele~f~~~fk~rRi~l~~tQ~~v~~al~~~~~~~~sq~~~~~~e~~~l~~ 57 (160)
T 1e3o_C 4 SDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSF 57 (160)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCH
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCC
T ss_conf 989999999999999885037658699999983037877757772787533462
No 107
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=82.36 E-value=0.87 Score=23.85 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 899899999999999999819979999998724699999985
Q gi|254780424|r 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE 48 (144)
Q Consensus 7 ~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E 48 (144)
.|=+.| +=++|-++ -..|+++.++|.+++||++++++|-
T Consensus 16 rpLs~~--~R~rIv~l-~~~G~s~~~Iar~l~Vs~~~V~kil 54 (128)
T 1pdn_C 16 RPLPNN--IRLKIVEM-AADGIRPCVISRQLRVSHGCVSKIL 54 (128)
T ss_dssp SCCCHH--HHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHH--HHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 589899--99999999-9869999999998896899999999
No 108
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=82.27 E-value=0.69 Score=24.48 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 199799999987246999999852
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEK 49 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~ 49 (144)
..+|++|+|+.+|||++.+.++|+
T Consensus 24 ~~~tl~eia~~lgvS~erVrqie~ 47 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 977899999998969999999999
No 109
>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=82.23 E-value=1.6 Score=22.20 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 68998999999999999998199799999987246999999
Q gi|254780424|r 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 6 ~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144)
..=+.+|.. =|+.+...--+|..++|+.+|+|.+++++
T Consensus 5 ~~LD~~D~~---Il~~L~~d~R~s~~eia~~lgls~~tv~~ 42 (151)
T 2dbb_A 5 RKLDRVDMQ---LVKILSENSRLTYRELADILNTTRQRIAR 42 (151)
T ss_dssp -CCCHHHHH---HHHHHHHCTTCCHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 676199999---99999885999999999998969999999
No 110
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=81.95 E-value=0.3 Score=26.83 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHH
Q ss_conf 997999999872469999998528988358999999975499999
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~ 71 (144)
=++|..+|+.+||+.|+||+|-.+-. |....|..+-+ +||.-+
T Consensus 23 ~~gq~~~Ak~~G~~eS~ISRwk~~~~-~~~smllAvLE-~gv~dd 65 (97)
T 1xwr_A 23 MLGTEKTAEAVGVDKSQISRWKRDWI-PKFSMLLAVLE-WGVVDD 65 (97)
T ss_dssp HHCHHHHHHHHTCCTTTHHHHHHHHH-HHHHHHHHHHH-HCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHHH-HCCCCH
T ss_conf 98202079984987988633222079-99999999999-701554
No 111
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=81.31 E-value=1.1 Score=23.29 Aligned_cols=35 Identities=9% Similarity=0.190 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999998199799999987246999999
Q gi|254780424|r 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144)
|.+|.. =|+.+++.-.+|..++|+++|+|.+++.+
T Consensus 2 D~~D~~---Il~~L~~d~R~s~~eia~~lg~s~~tv~~ 36 (150)
T 2pn6_A 2 DEIDLR---ILKILQYNAKYSLDEIAREIRIPKATLSY 36 (150)
T ss_dssp CHHHHH---HHHHHTTCTTSCHHHHHHHHTSCHHHHHH
T ss_pred CHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 889999---99999984899999999998939999999
No 112
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89}
Probab=81.16 E-value=1.2 Score=22.87 Aligned_cols=29 Identities=21% Similarity=0.053 Sum_probs=14.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999981997999999872469999998
Q gi|254780424|r 19 IRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
|..++..-|+|+.+||+.+|++++++++.
T Consensus 37 L~~l~~~~~~t~~~la~~l~i~~~tvs~~ 65 (142)
T 3bdd_A 37 LQTLLKDAPLHQLALQERLQIDRAAVTRH 65 (142)
T ss_dssp HHHHHHHCSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99998779989999999989698689999
No 113
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=81.10 E-value=2.7 Score=20.71 Aligned_cols=41 Identities=22% Similarity=0.449 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHCCCCCCC
Q ss_conf 9999999999819979999998724------6999999852898835
Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGI------TFQQVQKYEKGVNRVG 55 (144)
Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGv------s~s~is~~E~G~~~ps 55 (144)
..+-++..|..+|+||.+++..+|. |.++++..|.-...+.
T Consensus 9 f~~~fk~rRi~Lg~SQ~~V~~al~~~~~~~~sq~~i~~fe~~~ls~k 55 (151)
T 3d1n_I 9 FAKNFKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPK 55 (151)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCHH
T ss_conf 99999987777178786699998664676566021468999765762
No 114
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=80.89 E-value=2.1 Score=21.35 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCC
Q ss_conf 9999999999998199799999987-24699999985289
Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGV 51 (144)
Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G~ 51 (144)
..|-++|++.-+..+++|.-||+.+ |.|+.++|.+-+.-
T Consensus 20 ~~I~~~v~~eL~~~~I~Q~~Fa~~VL~rsQGtlSdLL~~P 59 (101)
T 1x2l_A 20 AEIAFQVKEQLLKHNIGQRVFGHYVLGLSQGSVSEILARP 59 (101)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTTCSCHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHCC
T ss_conf 9999999999999498599999999810858899998389
No 115
>2o4a_A DNA-binding protein SATB1; protein-DNA complex, transcription, transcription/DNA complex; HET: DNA; 1.75A {Homo sapiens} SCOP: a.35.1.7 PDB: 2o49_A*
Probab=80.85 E-value=2.8 Score=20.59 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCC
Q ss_conf 999999999998199799999987-246999999852898
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVN 52 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G~~ 52 (144)
.|.++|++.=...+++|.-||+.+ |.|+.++|.+-+.-.
T Consensus 11 eI~~~i~~eL~~~~I~Q~~Fak~VL~rsQGtlSdLLr~Pk 50 (93)
T 2o4a_A 11 EIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEE 50 (93)
T ss_dssp THHHHHHHHHHHHTCCHHHHHHHHHSCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHCCC
T ss_conf 9999999999985764999999998107058999983899
No 116
>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=80.77 E-value=1.9 Score=21.73 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 998999999999999998199799999987246999999
Q gi|254780424|r 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 8 ~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144)
-+.+|.. =|+.+++.--+|..++|+++|+|.+++.+
T Consensus 15 LD~~D~~---IL~~Lq~d~R~s~~eIA~~lgls~~tv~~ 50 (171)
T 2ia0_A 15 LDDLDRN---ILRLLKKDARLTISELSEQLKKPESTIHF 50 (171)
T ss_dssp CCHHHHH---HHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 4999999---99999984899999999998909999999
No 117
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution; 1.70A {Pseudomonas fluorescens pf-5}
Probab=80.46 E-value=0.95 Score=23.60 Aligned_cols=27 Identities=15% Similarity=0.318 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 799999987246999999852898835
Q gi|254780424|r 29 SQEKLGECLGITFQQVQKYEKGVNRVG 55 (144)
Q Consensus 29 TQ~eLA~~lGvs~s~is~~E~G~~~ps 55 (144)
||.+.|+.+||.+++||+--+-.+++-
T Consensus 15 ~Q~k~A~~lGV~Q~AIsKAlragR~I~ 41 (67)
T 2pij_A 15 TQSALAAALGVNQSAISQMVRAGRSIE 41 (67)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCCEEE
T ss_conf 588999991975899999997598179
No 118
>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=80.33 E-value=2 Score=21.58 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 998999999999999998199799999987246999999
Q gi|254780424|r 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 8 ~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144)
=|.+|+. =|+.+...--+|..++|+++|+|.+++.+
T Consensus 25 LD~~D~~---IL~~L~~d~R~s~~~iA~~lglS~~tV~~ 60 (171)
T 2e1c_A 25 LDEIDKK---IIKILQNDGKAPLREISKITGLAESTIHE 60 (171)
T ss_dssp CCHHHHH---HHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 6599999---99999983899999999998919999999
No 119
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum sensing, DNA-binding; 2.30A {Xanthomonas campestris PV}
Probab=80.00 E-value=0.88 Score=23.81 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=8.5
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 9799999987246999999
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~ 46 (144)
+||+++|+.+|+|+.++++
T Consensus 188 lt~~~lA~~lg~sr~tv~R 206 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGR 206 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHH
T ss_conf 8999999997998999999
No 120
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=79.91 E-value=1.4 Score=22.60 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=24.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999981997999999872469999998
Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
-++.+|. ..+|..|||+.+|+|++|++++
T Consensus 25 il~~l~~-gpiSR~eLa~~tgLS~~Tvs~i 53 (380)
T 2hoe_A 25 ILKRIMK-SPVSRVELAEELGLTKTTVGEI 53 (380)
T ss_dssp SHHHHHH-SCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHH-CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999980-9959999998889599999999
No 121
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=79.51 E-value=1.5 Score=22.31 Aligned_cols=24 Identities=8% Similarity=0.045 Sum_probs=11.3
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 9998728999999999999999999
Q gi|254780424|r 104 NRYFIQIDDVKVRQKIIELVRSIVS 128 (144)
Q Consensus 104 ~~~~~~l~~~~~r~~i~~l~~~l~~ 128 (144)
...|..+++.+ ...+..+++.+..
T Consensus 122 ~~~~~~l~~~e-~~~~~~~l~~l~~ 145 (150)
T 2rdp_A 122 ANVLESFSDEE-IVVFERCLRKLHQ 145 (150)
T ss_dssp HHHGGGSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHH-HHHHHHHHHHHHH
T ss_conf 99996899999-9999999999999
No 122
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=79.43 E-value=0.31 Score=26.74 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 199799999987246999999852
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEK 49 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~ 49 (144)
..-|.+++|+.+|++...+..+.+
T Consensus 129 ~~p~~~~ia~~l~~~~~~v~~~~~ 152 (243)
T 1l0o_C 129 RAPTVTEIADHLGISPEDVVLAQE 152 (243)
T ss_dssp SCCBHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 998388999893999999999999
No 123
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=79.22 E-value=1 Score=23.46 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1997999999872469999998
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~ 47 (144)
..+||++||..+|+|+.++++.
T Consensus 162 ~~lt~~~lA~~lg~sr~tvsr~ 183 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTA 183 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHH
T ss_pred CCCHHHHHHHHHCCCHHHHHHH
T ss_conf 8846999999979989999999
No 124
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=79.05 E-value=1.3 Score=22.75 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=19.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999981997999999872469999998
Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
-|..+...-++|+.++|+.+|++++++++.
T Consensus 45 vL~~L~~~~~~t~~~la~~l~i~~~~vsr~ 74 (148)
T 3nrv_A 45 IISVLSSASDCSVQKISDILGLDKAAVSRT 74 (148)
T ss_dssp HHHHHHHSSSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999779979999999989699899999
No 125
>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=78.92 E-value=1.5 Score=22.29 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=18.4
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999981997999999872469999998
Q gi|254780424|r 19 IRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
|..+...-++|+.+||+.+|++++++++.
T Consensus 50 L~~l~~~~~~t~~eLa~~l~i~~~tvs~~ 78 (154)
T 2eth_A 50 FLYVALFGPKKMKEIAEFLSTTKSNVTNV 78 (154)
T ss_dssp HHHHHHHCCBCHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999869949999999989798899999
No 126
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=78.85 E-value=1.5 Score=22.39 Aligned_cols=31 Identities=10% Similarity=0.108 Sum_probs=20.9
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999981997999999872469999998
Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
.-|..+...-|+|+.+||+.+|++++++++.
T Consensus 33 ~vL~~i~~~~~~t~~eLa~~~~~~~~~vs~~ 63 (138)
T 3bpv_A 33 ACLLRIHREPGIKQDELATFFHVDKGTIART 63 (138)
T ss_dssp HHHHHHHHSTTCBHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999998589979999999989798799999
No 127
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=78.70 E-value=1.4 Score=22.52 Aligned_cols=35 Identities=17% Similarity=0.126 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999998199799999987246999999
Q gi|254780424|r 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144)
+.+|.- =|+.++..-.+|..++|+.+|+|.+++.+
T Consensus 6 D~~D~~---Il~~L~~n~R~s~~~ia~~~gls~~tv~~ 40 (150)
T 2w25_A 6 DDIDRI---LVRELAADGRATLSELATRAGLSVSAVQS 40 (150)
T ss_dssp CHHHHH---HHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 099999---99999983899999999998929899999
No 128
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=78.64 E-value=2.2 Score=21.23 Aligned_cols=31 Identities=13% Similarity=0.010 Sum_probs=26.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999819979999998724699999985
Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYE 48 (144)
Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E 48 (144)
.+=.+|---|+|.+|+|+.+|+|.+++...=
T Consensus 29 ~vi~L~~~~~ls~~EIA~~lgis~~~V~~~l 59 (113)
T 1s7o_A 29 NYIELYYADDYSLAEIADEFGVSRQAVYDNI 59 (113)
T ss_dssp HHHHHHHHTCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 9999999973129999999897999999999
No 129
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=78.64 E-value=3.1 Score=20.28 Aligned_cols=19 Identities=5% Similarity=0.127 Sum_probs=8.1
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 9799999987246999999
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~ 46 (144)
+|+.+||+.+|++++++++
T Consensus 51 ~t~~ela~~~~~~~~tvs~ 69 (147)
T 2hr3_A 51 VTPSELAAAERMRSSNLAA 69 (147)
T ss_dssp BCHHHHHHHTTCCHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHH
T ss_conf 8999999998979879999
No 130
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=78.62 E-value=1.7 Score=22.03 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=6.5
Q ss_pred HHHHHCCCCHHHH
Q ss_conf 9997549999995
Q gi|254780424|r 61 HISEVLESPISFF 73 (144)
Q Consensus 61 ~iA~~l~v~~~~l 73 (144)
.||+.++++...+
T Consensus 50 ~la~~l~~~~~~v 62 (145)
T 3g3z_A 50 HIGEKWSLPKQTV 62 (145)
T ss_dssp HHHHHHTCCHHHH
T ss_pred HHHHHHCCCHHHH
T ss_conf 9999989698899
No 131
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA- binding, nucleotide-binding, transcription; HET: CMP; 1.66A {Escherichia coli k-12} PDB: 3fwe_A 1g6n_A* 2cgp_A* 3hif_A 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 1hw5_A* 1ruo_A* 1i6x_A* 1cgp_A* 1o3t_A* ...
Probab=78.56 E-value=1 Score=23.35 Aligned_cols=19 Identities=16% Similarity=0.541 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 9799999987246999999
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~ 46 (144)
+||++||..+|+|+.++++
T Consensus 218 lt~~~LA~~lG~sr~tvsR 236 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGR 236 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHH
T ss_conf 8999999997998999999
No 132
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H
Probab=78.31 E-value=1.8 Score=21.75 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=26.5
Q ss_pred HHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999----81997999999872469999998528
Q gi|254780424|r 17 KRIRLRRM----ILGMSQEKLGECLGITFQQVQKYEKG 50 (144)
Q Consensus 17 ~rIr~~R~----~~glTQ~eLA~~lGvs~s~is~~E~G 50 (144)
+.|=.+|- ...+|+.|+|+.+|||+..+.++|+-
T Consensus 16 r~Ii~~ryGl~~~~~~tl~eIa~~lgiS~erVrqi~~~ 53 (73)
T 1ku3_A 16 AMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp HHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999981899999878999999989699999999999
No 133
>2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain, winged helix-turn-helix, thermus thermophilus DNA-binding, plasmid; 2.00A {Thermus thermophilus}
Probab=78.08 E-value=0.87 Score=23.84 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 997999999872469999998
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~ 47 (144)
.+||.+||..+|+|+.++++.
T Consensus 139 ~lt~~~lA~~lg~sr~tvsR~ 159 (195)
T 2zdb_A 139 TVSHEEIADATASIRESVSKV 159 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
T ss_conf 887999998879979999999
No 134
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=78.04 E-value=1.7 Score=21.99 Aligned_cols=29 Identities=7% Similarity=-0.028 Sum_probs=24.1
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999981997999999872469999998
Q gi|254780424|r 19 IRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
+..+...-++|+.+||+.+|++++++++.
T Consensus 22 L~~L~~~~~~t~~eLa~~l~is~~~vs~~ 50 (100)
T 1ub9_A 22 MIFLLPRRKAPFSQIQKVLDLTPGNLDSH 50 (100)
T ss_dssp HHHHHHHSEEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99985189983999999989199899999
No 135
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=77.95 E-value=2.2 Score=21.27 Aligned_cols=72 Identities=22% Similarity=0.367 Sum_probs=53.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH--HCCC---CHHHHHHHHHHHHHHHHHH-----HCCCCCCC---HHHHHHHHHHCC
Q ss_conf 998766899899999999999999--8199---7999999872469999998-----52898835---899999997549
Q gi|254780424|r 1 MVGNKKIPNPVDINVGKRIRLRRM--ILGM---SQEKLGECLGITFQQVQKY-----EKGVNRVG---ASRLQHISEVLE 67 (144)
Q Consensus 1 ~~~~~~~~~~~d~~iG~rIr~~R~--~~gl---TQ~eLA~~lGvs~s~is~~-----E~G~~~ps---~~~L~~iA~~l~ 67 (144)
|+.+++.|.+.=..+-.++|.+.. ..|. |=.+||+.+|++.++|-+= +.|+...- -+.+..|.+.||
T Consensus 1 m~~~k~Ip~~ti~RLp~Y~r~L~~l~~~g~~~iSS~~La~~~gi~~~qVRKDls~fG~~G~~g~GY~V~~L~~~i~~iLG 80 (212)
T 3keo_A 1 MIMDKSIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGELGRRGFGYDVKKLMNFFAEILN 80 (212)
T ss_dssp -----CCCHHHHTTHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHTTGGGTTTSSSEEHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 98567899999999999999999998869868979999999698999999899886217999989349999999999968
Q ss_pred CCHHH
Q ss_conf 99999
Q gi|254780424|r 68 SPISF 72 (144)
Q Consensus 68 v~~~~ 72 (144)
++-.|
T Consensus 81 ~~~~~ 85 (212)
T 3keo_A 81 DHSTT 85 (212)
T ss_dssp TTSCE
T ss_pred CCCCC
T ss_conf 99984
No 136
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A
Probab=77.92 E-value=1.3 Score=22.78 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=13.1
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 999998199799999987246999999
Q gi|254780424|r 20 RLRRMILGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 20 r~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144)
..+....|+||.+||+.+|++++++++
T Consensus 44 ~~l~~~~~~t~~~La~~l~i~~~~vsr 70 (142)
T 3ech_A 44 KLIDEQRGLNLQDLGRQMCRDKALITR 70 (142)
T ss_dssp HHHHHTTTCCHHHHHHHHC---CHHHH
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999977998999999998969879999
No 137
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus dk 1622}
Probab=77.92 E-value=0.84 Score=23.94 Aligned_cols=24 Identities=13% Similarity=0.335 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 199799999987246999999852
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEK 49 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~ 49 (144)
..+|-.|+|+.+|||.++|-.||+
T Consensus 4 ~~y~I~eva~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 4 MTLRIRTIARMTGIREATLRAWER 27 (81)
T ss_dssp CCEEHHHHHHTTSTTHHHHHHHHH
T ss_pred CEEEHHHHHHHHCCCHHHHHHHHH
T ss_conf 535599999998859999999998
No 138
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=77.91 E-value=0.61 Score=24.83 Aligned_cols=24 Identities=13% Similarity=0.506 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 997999999872469999998528
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKG 50 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G 50 (144)
.+++.++|+.+|||..||.+|-+-
T Consensus 2 ~vNk~qlA~~fgVS~~TI~~W~~~ 25 (68)
T 1j9i_A 2 EVNKKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp EEEHHHHHHHTTCCHHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHC
T ss_conf 558999999979888999999987
No 139
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=77.76 E-value=2.1 Score=21.37 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=25.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999998199799999987246999999852
Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEK 49 (144)
Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144)
+.+=.+|--.|+|.+|+|+.+|+|.+++....+
T Consensus 43 r~vi~l~~~~g~s~~eIA~~lgis~~tV~~~l~ 75 (92)
T 3hug_A 43 RAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLH 75 (92)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999399999999998969999999999
No 140
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50
Probab=77.74 E-value=1.4 Score=22.44 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=20.8
Q ss_pred HHHHH-HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999-981997999999872469999998
Q gi|254780424|r 19 IRLRR-MILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 19 Ir~~R-~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
|..+- ...++|+.++|+.+|++++++++.
T Consensus 27 L~~L~~~~~~~t~~eia~~~~~~~~tvs~~ 56 (109)
T 2d1h_A 27 LLKMVEIEKPITSEELADIFKLSKTTVENS 56 (109)
T ss_dssp HHHHHHHCSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999997598989999999989788589999
No 141
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=77.70 E-value=1.8 Score=21.76 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=18.2
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999981997999999872469999998
Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
-|..+...-++||.+||+.+|++++++++.
T Consensus 39 vL~~l~~~~~~t~~ela~~~~~~~~~vs~~ 68 (138)
T 1jgs_A 39 VLCSIRCAACITPVELKKVLSVDLGALTRM 68 (138)
T ss_dssp HHHHHHHHSSBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999998779989999999989788799999
No 142
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=77.50 E-value=1.6 Score=22.16 Aligned_cols=35 Identities=20% Similarity=0.272 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999998199799999987246999999
Q gi|254780424|r 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144)
|.+|+- =|+.+.+.--+|..++|+.+|+|.+++.+
T Consensus 4 D~~D~~---Il~~L~~n~R~s~~eiA~~~g~s~~tv~~ 38 (144)
T 2cfx_A 4 DQIDLN---IIEELKKDSRLSMRELGRKIKLSPPSVTE 38 (144)
T ss_dssp CHHHHH---HHHHHHHCSCCCHHHHHHHHTCCHHHHHH
T ss_pred CHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 889999---99999983899999999998929899999
No 143
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=77.20 E-value=1.2 Score=22.95 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 997999999872469999998
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~ 47 (144)
.+||++||+.+|+|+.++++.
T Consensus 193 ~lt~~~LA~~lGisr~tvsR~ 213 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRL 213 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHH
T ss_conf 525999988879999999999
No 144
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=77.01 E-value=1 Score=23.39 Aligned_cols=35 Identities=11% Similarity=0.197 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999998199799999987246999999
Q gi|254780424|r 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144)
|.+|.. =|+.++..-.+|..++|+++|+|.+++.+
T Consensus 2 D~~D~~---IL~~L~~d~R~s~~eiA~~lglS~~tv~~ 36 (162)
T 3i4p_A 2 DRLDRK---ILRILQEDSTLAVADLAKKVGLSTTPCWR 36 (162)
T ss_dssp CHHHHH---HHHHHTTCSCSCHHHHHHHHTCCHHHHHH
T ss_pred CHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 879999---99999984899999999998929999999
No 145
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A
Probab=76.93 E-value=1.7 Score=22.00 Aligned_cols=35 Identities=11% Similarity=0.172 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999998199799999987246999999
Q gi|254780424|r 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144)
+.+|.. =|+.++..--+|..++|+++|+|.+++.+
T Consensus 9 D~~D~~---Il~~L~~d~R~s~~eiA~~~gls~~tv~~ 43 (162)
T 2p5v_A 9 DKTDIK---ILQVLQENGRLTNVELSERVALSPSPCLR 43 (162)
T ss_dssp CHHHHH---HHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred CHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 899999---99999983799999999998929999999
No 146
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexibility; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=76.92 E-value=1.5 Score=22.31 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=27.5
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999998199799999987246999999852898835
Q gi|254780424|r 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 (144)
Q Consensus 19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps 55 (144)
|.++=...| |.+.|+.+||.+++||+--+-.+++-
T Consensus 7 L~dyv~~~G--Q~k~A~~lGV~q~AIsKAlragR~I~ 41 (66)
T 2ovg_A 7 LKDYAMRFG--QTKTAKDLGVYPSSINQAIHAGRKIF 41 (66)
T ss_dssp HHHHHHHHC--HHHHHHHHTSCHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHC--HHHHHHHCCCCHHHHHHHHHCCCEEE
T ss_conf 999999978--59999990976899999997598179
No 147
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV}
Probab=76.81 E-value=2.4 Score=21.04 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=25.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999981997999999872469999998
Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
+.+=.+|.-.|+|++|+|+.+|+|.+++...
T Consensus 21 r~v~~l~~~~g~s~~EIA~~lgis~~tvk~~ 51 (70)
T 2o8x_A 21 REALLLTQLLGLSYADAAAVCGCPVGTIRSR 51 (70)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999989990999999999989799999999
No 148
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=76.81 E-value=1.3 Score=22.75 Aligned_cols=30 Identities=13% Similarity=0.015 Sum_probs=17.7
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999981997999999872469999998
Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
-|..+...-|+||.+||+.+|++++++++.
T Consensus 52 vL~~l~~~~~~~~~eLa~~l~~~~~tvs~~ 81 (153)
T 2pex_A 52 VMLVLWETDERSVSEIGERLYLDSATLTPL 81 (153)
T ss_dssp HHHHHHHSCSEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999998479989999999989688689999
No 149
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=76.75 E-value=2.1 Score=21.41 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=9.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8199799999987246999999
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~ 46 (144)
.-++|+.+||+.+|++++++++
T Consensus 45 ~~~~t~~ela~~~~~~~~~vs~ 66 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTG 66 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHH
T ss_conf 7998999999998979878999
No 150
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, PSI; 1.90A {Porphyromonas gingivalis W83} SCOP: a.4.5.4 b.82.3.2
Probab=76.27 E-value=1.2 Score=22.92 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 997999999872469999998
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~ 47 (144)
-+||++||..+|+|+.++++.
T Consensus 180 ~~t~~~lA~~~G~sr~tvsr~ 200 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRT 200 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHH
T ss_pred CCHHHHHHHHHCCCHHHHHHH
T ss_conf 505999998879899999999
No 151
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=76.23 E-value=3.5 Score=19.95 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCC
Q ss_conf 9999999999998199799999987-2469999998528
Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKG 50 (144)
Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G 50 (144)
..|.++|++.=+..+++|.-||+.+ |.|+.+++.+-+.
T Consensus 30 ~~Ia~~v~~~L~~~~IsQ~~Fak~VL~rSQGtlSdLL~~ 68 (111)
T 1wh8_A 30 YSITKRVKEVLTDNNLGQRLFGESILGLTQGSVSDLLSR 68 (111)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTTCCCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHC
T ss_conf 999999999999858529999999980084789999838
No 152
>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=76.21 E-value=1.6 Score=22.15 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=21.9
Q ss_pred HHHHHHCC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999819-97999999872469999998
Q gi|254780424|r 20 RLRRMILG-MSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 20 r~~R~~~g-lTQ~eLA~~lGvs~s~is~~ 47 (144)
..++...+ +|-.+||+.+|||+.||.+.
T Consensus 28 ~~L~~~~~~vs~~eLa~~l~vS~~TIrrd 56 (187)
T 1j5y_A 28 RILERSKEPVSGAQLAEELSVSRQVIVQD 56 (187)
T ss_dssp HHHHHCSSCBCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99998599676999999979899999999
No 153
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=76.15 E-value=3.1 Score=20.33 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCC-----CC-HHHHHHHHHHCC
Q ss_conf 9999999999998199799999987-2469999998528988-----35-899999997549
Q gi|254780424|r 13 INVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNR-----VG-ASRLQHISEVLE 67 (144)
Q Consensus 13 ~~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G~~~-----ps-~~~L~~iA~~l~ 67 (144)
..|.++|++.=+..+++|+-||+.+ |.|+.++|.+-+.-.. ++ .+...++-..|+
T Consensus 20 ~~I~~~v~~eL~~~~I~Q~~Fa~~VL~rSQGtlSdLL~~PKPW~kl~~~gr~~y~RM~~wL~ 81 (101)
T 1wh6_A 20 LELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLS 81 (101)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHTTCCCHHHHHHHHHSCCCTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999994986999999998208378999984799878874864488999999965
No 154
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=76.15 E-value=1.4 Score=22.55 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHH----HCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 999872469999998----52898835899999997549999995
Q gi|254780424|r 33 LGECLGITFQQVQKY----EKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 33 LA~~lGvs~s~is~~----E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
.+...|+|.+++.-+ ++|. + +...||+.++++...+
T Consensus 33 ~~~~~glt~~q~~vL~~L~~~~~--~---t~~~La~~l~~~~~tv 72 (154)
T 2qww_A 33 NAASLGLTIQQLAMINVIYSTPG--I---SVADLTKRLIITGSSA 72 (154)
T ss_dssp HHHHHTCCHHHHHHHHHHHHSTT--E---EHHHHHHHHTCCHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHCCC--C---CHHHHHHHHCCCHHHH
T ss_conf 99876989999999999997799--8---9999999979787579
No 155
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=76.13 E-value=1.8 Score=21.77 Aligned_cols=35 Identities=17% Similarity=0.135 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 98999999999999998199799999987246999999
Q gi|254780424|r 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144)
+.+|.. =|+.+.+...+|..++|+++|+|.+++.+
T Consensus 3 D~~D~~---Il~~L~~d~r~s~~~ia~~~gls~~tv~~ 37 (141)
T 1i1g_A 3 DERDKI---ILEILEKDARTPFTEIAKKLGISETAVRK 37 (141)
T ss_dssp CSHHHH---HHHHHHHCTTCCHHHHHHHHTSCHHHHHH
T ss_pred CHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 779999---99999984898999999998929999999
No 156
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=75.68 E-value=1.3 Score=22.72 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=15.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1997999999872469999998
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~ 47 (144)
.++|+.+||+.+|++++++++.
T Consensus 56 ~~~t~~eLa~~l~i~~stvs~~ 77 (189)
T 3nqo_A 56 EETTLNNIARKMGTSKQNINRL 77 (189)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9909999999989688699999
No 157
>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6}
Probab=75.48 E-value=1.1 Score=23.15 Aligned_cols=49 Identities=14% Similarity=0.006 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH-HHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99999999999819979999998724-69999998528988358999999975
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEV 65 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGv-s~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144)
.+.+.|- -+...|.|..++|...|| |.+|+.+|-+-. |.+..-..-|+.
T Consensus 19 e~~e~I~-~~l~~G~sl~~i~~~~gvps~sT~~~Wl~~~--~ef~e~y~~Ar~ 68 (143)
T 3hef_A 19 EVADDIC-SLLSSGESLLKVCKRPGMPDKSTVFRWLAKH--EDFRDKYAKATE 68 (143)
T ss_dssp HHHHHHH-HHHHTTCCHHHHHTSTTCCCHHHHHHHTTTC--HHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHCCCCHHHHHHCCCCCCHHHHHHHHHHC--HHHHHHHHHHHH
T ss_conf 9999999-9998898599998707999689999999718--999999999999
No 158
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa}
Probab=75.38 E-value=2.1 Score=21.38 Aligned_cols=13 Identities=0% Similarity=0.061 Sum_probs=6.8
Q ss_pred HHHHHCCCCHHHH
Q ss_conf 9997549999995
Q gi|254780424|r 61 HISEVLESPISFF 73 (144)
Q Consensus 61 ~iA~~l~v~~~~l 73 (144)
.||+.++++...+
T Consensus 57 eLa~~~~~~~~~v 69 (140)
T 2nnn_A 57 QLGRLTAMDAATI 69 (140)
T ss_dssp HHHHHTTCCHHHH
T ss_pred HHHHHHCCCCCCH
T ss_conf 9999878573529
No 159
>3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656}
Probab=75.18 E-value=4.1 Score=19.53 Aligned_cols=21 Identities=14% Similarity=0.347 Sum_probs=15.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 997999999872469999998
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~ 47 (144)
.+||+++|..+|+|+.++++.
T Consensus 169 ~~t~~~lA~~lg~sr~tvsr~ 189 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRM 189 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
T ss_conf 899999999979899999999
No 160
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=75.12 E-value=1.5 Score=22.29 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=16.3
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999981997999999872469999998
Q gi|254780424|r 19 IRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
|..+...-|+|+.+||+.+|++++++++.
T Consensus 58 L~~l~~~~~~t~~~La~~~~~~~~~vsr~ 86 (162)
T 3cjn_A 58 LAILSAKDGLPIGTLGIFAVVEQSTLSRA 86 (162)
T ss_dssp HHHHHHSCSEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99998479989999999989798899999
No 161
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=75.08 E-value=1.2 Score=22.96 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=17.9
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999981997999999872469999998
Q gi|254780424|r 19 IRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
|..+...-|+||.+||+.+|++++++++.
T Consensus 46 L~~l~~~~~~t~~eLa~~~~i~~~tit~~ 74 (147)
T 1z91_A 46 LLLLWEHETLTVKKMGEQLYLDSGTLTPM 74 (147)
T ss_dssp HHHHHHHSEEEHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999779949999999979788789999
No 162
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=74.77 E-value=2.4 Score=21.00 Aligned_cols=32 Identities=9% Similarity=0.039 Sum_probs=26.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999819979999998724699999985
Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYE 48 (144)
Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E 48 (144)
+.+=.+|-.-|||..|.|+.+|||.+++...-
T Consensus 31 R~v~~l~~~e~ls~~EIA~~lgiS~~aV~~~l 62 (113)
T 1xsv_A 31 RNYLELFYLEDYSLSEIADTFNVSRQAVYDNI 62 (113)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999919999999999896999999999
No 163
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=74.73 E-value=4.1 Score=19.54 Aligned_cols=38 Identities=8% Similarity=0.073 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 68998999999999999998199799999987246999999
Q gi|254780424|r 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 6 ~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144)
.+-+.+|.. =|+.+...--+|..++|+.+|+|.+++.+
T Consensus 4 ~~lD~~D~~---Il~~L~~d~R~s~~~ia~~lg~s~~tv~~ 41 (152)
T 2cg4_A 4 YLIDNLDRG---ILEALMGNARTAYAELAKQFGVSPETIHV 41 (152)
T ss_dssp CCCCHHHHH---HHHHHHHCTTSCHHHHHHHHTSCHHHHHH
T ss_pred CCCCHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 556899999---99999984899999999998919999999
No 164
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=74.67 E-value=1.8 Score=21.81 Aligned_cols=43 Identities=5% Similarity=-0.018 Sum_probs=31.9
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9981997999999872469999998528988358999999975
Q gi|254780424|r 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 (144)
Q Consensus 23 R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144)
+--.++|-.++|+++|||++++.+|=.++...-...+......
T Consensus 24 ~G~~~~t~~~IA~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~ 66 (195)
T 3frq_A 24 CGPIEFTLSGVAKEVGLSRAALIQRFTNRDTLLVRMMERGVEQ 66 (195)
T ss_dssp HHHHHCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 5913077999999878982217873959999999999999999
No 165
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=74.57 E-value=1.6 Score=22.23 Aligned_cols=20 Identities=5% Similarity=0.077 Sum_probs=13.8
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 99799999987246999999
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~ 46 (144)
.+||+++|..+|+|+.++++
T Consensus 175 ~lt~~~iA~~lg~sr~tvsR 194 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSR 194 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 76999999886998999999
No 166
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=74.39 E-value=2.6 Score=20.78 Aligned_cols=29 Identities=17% Similarity=0.115 Sum_probs=16.3
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999981997999999872469999998
Q gi|254780424|r 19 IRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
+..+...-++|+.++|+.+|+++++++.+
T Consensus 26 ~~~L~~~~~~t~~eia~~~~~~~~~v~~~ 54 (109)
T 1sfx_A 26 YSLLLERGGMRVSEIARELDLSARFVRDR 54 (109)
T ss_dssp HHHHHHHCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 99998048887999999975670189999
No 167
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=74.36 E-value=2.4 Score=21.07 Aligned_cols=42 Identities=10% Similarity=0.053 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 9999987246999999852898835899999997549999995
Q gi|254780424|r 31 EKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 31 ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
..+.+..|++..++.-+..=...|.. +...||+.++++...+
T Consensus 39 ~~~~~~~glt~~q~~iL~~l~~~~~~-t~~~La~~l~i~~~~v 80 (162)
T 2fa5_A 39 KVYGDRYGMAIPEWRVITILALYPGS-SASEVSDRTAMDKVAV 80 (162)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHSTTC-CHHHHHHHHTCCHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHH
T ss_conf 99998849799999999999867998-9999999978787159
No 168
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3}
Probab=74.24 E-value=1.7 Score=22.04 Aligned_cols=12 Identities=8% Similarity=0.163 Sum_probs=6.1
Q ss_pred HHHHHHCCCCHH
Q ss_conf 999975499999
Q gi|254780424|r 60 QHISEVLESPIS 71 (144)
Q Consensus 60 ~~iA~~l~v~~~ 71 (144)
..||..++++..
T Consensus 58 ~~La~~l~~~~~ 69 (152)
T 3bj6_A 58 PQLGAALQMKRQ 69 (152)
T ss_dssp HHHHHHHTCCHH
T ss_pred HHHHHHHCCCHH
T ss_conf 999999896987
No 169
>1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} SCOP: a.4.13.2
Probab=74.17 E-value=2 Score=21.48 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 997999999872469999998528
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKG 50 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G 50 (144)
.+|++|+|+.+|||+..|.++|..
T Consensus 38 ~~tl~eIa~~lgvSrerVRQie~~ 61 (81)
T 1tlh_B 38 DYTLEEVGKQFDVTRERIRQIEAK 61 (81)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 557999999989799999999999
No 170
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=74.10 E-value=1.2 Score=22.93 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=13.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1997999999872469999998
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~ 47 (144)
.++|+.+||+.+|+|++++++.
T Consensus 40 ~p~t~~eLa~~l~is~s~vs~~ 61 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMS 61 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 8929999999989688579999
No 171
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=74.08 E-value=2 Score=21.45 Aligned_cols=32 Identities=9% Similarity=-0.086 Sum_probs=19.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999981997999999872469999998
Q gi|254780424|r 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 16 G~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
..-|..+...-|+||.+||+.+|++++++++.
T Consensus 40 ~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~ 71 (143)
T 3oop_A 40 WSVLEGIEANEPISQKEIALWTKKDTPTVNRI 71 (143)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99999998689979999999989699799999
No 172
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=74.02 E-value=1.6 Score=22.09 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=18.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1997999999872469999998
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~ 47 (144)
..+||+++|+.+|+|+.++++.
T Consensus 176 ~~lt~~~LA~~lgisr~tvsR~ 197 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRV 197 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 8868999998979999999999
No 173
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus}
Probab=73.94 E-value=1.2 Score=22.89 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=15.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 81997999999872469999998
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
.-|+||.+||+.+|++++++++.
T Consensus 45 ~~~~t~~ela~~l~~~~~tvs~~ 67 (139)
T 3eco_A 45 QDGLTQNDIAKALQRTGPTVSNL 67 (139)
T ss_dssp TTCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99969999999989688789999
No 174
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=73.92 E-value=2.8 Score=20.60 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=22.5
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 81997999999872469999998528
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKG 50 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G 50 (144)
...+|+.++|+.+|||+..|.++|.-
T Consensus 36 ~~~~Tl~eI~~~lgiSreRVRQie~~ 61 (87)
T 1tty_A 36 GKPKTLEEVGQYFNVTRERIRQIEVK 61 (87)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99657999998959889999999999
No 175
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, 2Fe-2S; HET: DNA; 2.80A {Escherichia coli K12} PDB: 2zhh_A
Probab=73.71 E-value=1.5 Score=22.35 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=35.5
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCC-------------HH--HHHHHHHHCCCCHHHH
Q ss_conf 98199799999987246999999852-898835-------------89--9999997549999995
Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEK-GVNRVG-------------AS--RLQHISEVLESPISFF 73 (144)
Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~-G~~~ps-------------~~--~L~~iA~~l~v~~~~l 73 (144)
.+.=||-.|+|+.+|||.++|-.||+ |--.|. +. .+.+..+.+|++++.+
T Consensus 8 ~~~~mtIgEvA~~~gvs~~tLR~YE~~GLl~p~R~~~gyR~Y~~~dv~~l~~I~~lr~~g~sl~eI 73 (154)
T 2zhg_A 8 IKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATI 73 (154)
T ss_dssp --CCBCHHHHHHHHTSCHHHHHHHHHTTSSCCEECTTSCEEBCTTHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 244707999999988499999999988799997179986451568889999999999917989999
No 176
>2fmy_A COOA, carbon monoxide oxidation system transcription regulator COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=73.59 E-value=1.8 Score=21.84 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1997999999872469999998
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~ 47 (144)
..+||+++|..+|+|+.+++++
T Consensus 166 ~~lt~~~lA~~lg~sr~tvsr~ 187 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVL 187 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHH
T ss_pred ECCHHHHHHHHHCCCHHHHHHH
T ss_conf 0724999999979999999999
No 177
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=73.26 E-value=4.5 Score=19.23 Aligned_cols=55 Identities=22% Similarity=0.433 Sum_probs=39.6
Q ss_pred CCCHHHHH-HHHHHHHHHHHCCCCHHHHHHHHH------HHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 89989999-999999999981997999999872------4699999985289883589999999
Q gi|254780424|r 7 IPNPVDIN-VGKRIRLRRMILGMSQEKLGECLG------ITFQQVQKYEKGVNRVGASRLQHIS 63 (144)
Q Consensus 7 ~~~~~d~~-iG~rIr~~R~~~glTQ~eLA~~lG------vs~s~is~~E~G~~~ps~~~L~~iA 63 (144)
.|.+-+.. .-..+|+.|..+|+||..++..+| .|.++|+..|.-...+ ....++-
T Consensus 9 ~~~~~ele~Fa~~~r~rri~lg~tq~~vg~al~~~~g~~~Sqtti~r~e~~~ls~--kn~~kl~ 70 (164)
T 2xsd_C 9 APSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSF--KNMCKLK 70 (164)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSBH--HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHCCCCH--HHHHHCC
T ss_conf 8999999999999999998717873335777542257777876565043258998--8886452
No 178
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=73.13 E-value=2.3 Score=21.17 Aligned_cols=58 Identities=17% Similarity=0.305 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHH---HHH-HCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 99899999999999999819979999998-72469999---998-52898835899999997549999
Q gi|254780424|r 8 PNPVDINVGKRIRLRRMILGMSQEKLGEC-LGITFQQV---QKY-EKGVNRVGASRLQHISEVLESPI 70 (144)
Q Consensus 8 ~~~~d~~iG~rIr~~R~~~glTQ~eLA~~-lGvs~s~i---s~~-E~G~~~ps~~~L~~iA~~l~v~~ 70 (144)
++++|.-...-++..|...++....++.. .|+|.+++ ..+ ++|. + +...||+.++++.
T Consensus 11 ~~~~~~l~~~l~~~~r~l~~~~~~~l~~~~~~LT~~q~~vL~~l~~~~~--~---~~~eLa~~l~i~~ 73 (168)
T 2nyx_A 11 EESVDVITDALLTASRLLVAISAHSIAQVDENITIPQFRTLVILSNHGP--I---NLATLATLLGVQP 73 (168)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHCS--E---EHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC--C---CHHHHHHHHCCCH
T ss_conf 3329999999999999999999999887579989999999999996799--6---9999999989698
No 179
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=72.77 E-value=1.9 Score=21.67 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=12.5
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99987289999999999999999999
Q gi|254780424|r 104 NRYFIQIDDVKVRQKIIELVRSIVSS 129 (144)
Q Consensus 104 ~~~~~~l~~~~~r~~i~~l~~~l~~~ 129 (144)
...+..+++.+ ...+..+++.+...
T Consensus 117 ~~~~~~ls~ee-~~~l~~~l~kl~~~ 141 (155)
T 1s3j_A 117 ARYLSFLTEEE-MLQAAHITAKLAQA 141 (155)
T ss_dssp HHHHTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHH-HHHHHHHHHHHHHH
T ss_conf 99983899999-99999999999999
No 180
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP- binding proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=72.77 E-value=1.8 Score=21.74 Aligned_cols=19 Identities=16% Similarity=0.501 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 9799999987246999999
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~ 46 (144)
+||+++|..+|+|+.++++
T Consensus 165 ~t~~~iA~~lg~sr~tvsr 183 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGR 183 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHH
T ss_conf 7899999887999999999
No 181
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, PSI-2, protein structure initiative; 1.80A {Cytophaga hutchinsonii atcc 33406}
Probab=72.54 E-value=0.61 Score=24.84 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 19979999998724699999985
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYE 48 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E 48 (144)
..+||+++|..+|+|+.++|++-
T Consensus 167 ~~~t~~~iA~~lG~sr~tlSRi~ 189 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIR 189 (194)
T ss_dssp -----------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 69799999999799899999999
No 182
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=72.18 E-value=1.8 Score=21.89 Aligned_cols=47 Identities=9% Similarity=0.206 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHC-CCCCC-----------CHHHHH-----HHHHHCCCCHHHH
Q ss_conf 99799999987246999999852-89883-----------589999-----9997549999995
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEK-GVNRV-----------GASRLQ-----HISEVLESPISFF 73 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~-G~~~p-----------s~~~L~-----~iA~~l~v~~~~l 73 (144)
.+|-.|+|+.+|||.++|-.||+ |--.| +...+. ..+..+|+|++.+
T Consensus 2 ~ytI~e~A~~~gvs~~tlR~Ye~~GLl~p~~r~~~gyR~Y~~~~v~~l~~I~~lr~~G~sl~ei 65 (109)
T 1r8d_A 2 KYQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEI 65 (109)
T ss_dssp CBCHHHHHHHHSCCHHHHHHHHHTTSSCCSEECTTCCEEBCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CEEHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 5109999999896999999999858948773189998306699999999999999969999999
No 183
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28
Probab=71.83 E-value=3.9 Score=19.68 Aligned_cols=63 Identities=10% Similarity=0.096 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH---H-HCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 998999999999999998199799999987246999999---8-52898835899999997549999995
Q gi|254780424|r 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQK---Y-EKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 8 ~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~---~-E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
.|+++..||..|+.+-....=.-...+...|++.+.+.- + +++....+ ...||+.++++....
T Consensus 1 ~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~glt~~q~~vL~~l~~~~~~~~t---~~~La~~l~i~~~~v 67 (141)
T 3bro_A 1 SNAMSRDLGRLLKIASNQMSTRFDIFAKKYDLTGTQMTIIDYLSRNKNKEVL---QRDLESEFSIKSSTA 67 (141)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTTSCCB---HHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC---HHHHHHHHCCCHHHH
T ss_conf 9168999999999999999999999998869899999999999848999959---999999989788589
No 184
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=71.73 E-value=3.9 Score=19.64 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999819979999998724699999985
Q gi|254780424|r 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE 48 (144)
Q Consensus 11 ~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E 48 (144)
+|..=-+.|...=...|..+.+.|+.+|||+.++.+.-
T Consensus 38 L~~~Er~~I~~aL~~~~GN~s~AAr~LGIsR~TLyrkl 75 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCDRNVSETARRLNMHRRTLQRIL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99999999999999972779999999798999999999
No 185
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=71.53 E-value=1.7 Score=21.99 Aligned_cols=11 Identities=9% Similarity=-0.164 Sum_probs=6.5
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999754999
Q gi|254780424|r 59 LQHISEVLESP 69 (144)
Q Consensus 59 L~~iA~~l~v~ 69 (144)
...||+.++++
T Consensus 63 ~~~La~~l~~~ 73 (162)
T 3k0l_A 63 NAKLAERSFIK 73 (162)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHCCC
T ss_conf 99999998968
No 186
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=71.23 E-value=1.5 Score=22.41 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=17.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1997999999872469999998
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~ 47 (144)
.-+||+++|+.+|+|+.++++.
T Consensus 177 l~~t~~~iA~~lgisr~tvsR~ 198 (237)
T 3fx3_A 177 LPYDKMLIAGRLGMKPESLSRA 198 (237)
T ss_dssp CCSCTHHHHHHTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 7889999998869989999999
No 187
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum}
Probab=70.51 E-value=1.2 Score=22.93 Aligned_cols=36 Identities=28% Similarity=0.134 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 989999999999999981997999999872469999
Q gi|254780424|r 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQV 44 (144)
Q Consensus 9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~i 44 (144)
+..|..+|-.|+.+-....-.-.+.....|++.+++
T Consensus 9 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~glt~~q~ 44 (148)
T 3jw4_A 9 HLMDTPYSYLIRSIGMKLKTSADARLAELGLNSQQG 44 (148)
T ss_dssp ---CCHHHHHHHHHHHHTTHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 888999999999999999999999987759899999
No 188
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.20 E-value=2.4 Score=21.06 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=10.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 998728999999999999999999
Q gi|254780424|r 105 RYFIQIDDVKVRQKIIELVRSIVS 128 (144)
Q Consensus 105 ~~~~~l~~~~~r~~i~~l~~~l~~ 128 (144)
..+..+++.+ .+.+..+++.+..
T Consensus 119 ~~~~~l~~ee-~~~l~~~L~~i~~ 141 (146)
T 2fbh_A 119 DVLTGIDESE-QALCQQVLLRILA 141 (146)
T ss_dssp HHTTTCCHHH-HHHHHHHHHHHHH
T ss_pred HHHHCCCHHH-HHHHHHHHHHHHH
T ss_conf 9995899999-9999999999999
No 189
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=69.94 E-value=1.6 Score=22.08 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 9799999987246999999
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~ 46 (144)
+||+++|..+|+|+.++++
T Consensus 179 ~t~~~lA~~lg~sr~tv~r 197 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSR 197 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHH
T ss_conf 0599998886998999999
No 190
>3ezq_A Tumor necrosis factor receptor superfamily member 6; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1ddf_A
Probab=69.72 E-value=5.2 Score=18.89 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 989999999999999981997-999999872469999998528988
Q gi|254780424|r 9 NPVDINVGKRIRLRRMILGMS-QEKLGECLGITFQQVQKYEKGVNR 53 (144)
Q Consensus 9 ~~~d~~iG~rIr~~R~~~glT-Q~eLA~~lGvs~s~is~~E~G~~~ 53 (144)
|+.|+-+.+.+..+-...+.+ =.+||.++|+|...|..++.....
T Consensus 1 ~l~d~dl~~~~~~ia~~l~~~dwk~l~r~LGls~~~I~~I~~~~~~ 46 (115)
T 3ezq_A 1 NLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVNEAKIDEIKNDNVQ 46 (115)
T ss_dssp CCHHHHHHHHHHHHHHTSCHHHHHHHHHHTTCCHHHHHHHHHHCSS
T ss_pred CCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 9415209999999998779998999999939899999999987889
No 191
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=69.64 E-value=2.8 Score=20.54 Aligned_cols=39 Identities=8% Similarity=0.149 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHH---HHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 9999998724699999---9852898835899999997549999995
Q gi|254780424|r 30 QEKLGECLGITFQQVQ---KYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 30 Q~eLA~~lGvs~s~is---~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...+++..|++.+++. .+..+. + +...||+.++++...+
T Consensus 26 ~~~l~~~~~lt~~q~~iL~~i~~~~--~---t~~~la~~~~~~~~tv 67 (144)
T 3f3x_A 26 NNRLGKLMNLSYLDFSILKATSEEP--R---SMVYLANRYFVTQSAI 67 (144)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHSC--E---EHHHHHHHHTCCHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHCC--C---CHHHHHHHHCCCHHHH
T ss_conf 9988876499999999999999199--6---9999999989788689
No 192
>1yse_A DNA-binding protein SATB1; all helical, DNA-binding domain, T-cell development; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=69.63 E-value=3.3 Score=20.11 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHH-HHHHHHHHHHHCCCCCCC------HHHHHHHHHHCCCCHH
Q ss_conf 999999999998199799999987-246999999852898835------8999999975499999
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVG------ASRLQHISEVLESPIS 71 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~l-Gvs~s~is~~E~G~~~ps------~~~L~~iA~~l~v~~~ 71 (144)
.|-++|++.=+..+++|+-||+.+ |.|+.++|.+-+.-..|. .+.+.++-..|+-|-.
T Consensus 25 ~i~~~v~~eL~~~~I~Q~~Fa~~vl~rsQgtlsdLL~~PKpp~~~~~~gre~f~RM~~wL~~pe~ 89 (141)
T 1yse_A 25 EIYQWVRDELKRAGISQAVFARVAFNRTQGLLSEILRKEEDPKTASQSLLVNLRAMQNFLQLPEA 89 (141)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHCCSCTTHHHHHHHHCCCGGGCCHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 99999999999848779999999982281889999858998566618778999999999828188
No 193
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=69.57 E-value=3.7 Score=19.79 Aligned_cols=38 Identities=3% Similarity=-0.014 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999998---19979999998724699999985289
Q gi|254780424|r 14 NVGKRIRLRRMI---LGMSQEKLGECLGITFQQVQKYEKGV 51 (144)
Q Consensus 14 ~iG~rIr~~R~~---~glTQ~eLA~~lGvs~s~is~~E~G~ 51 (144)
.|.+-+..+... ..+|.++||+.+|+|++++++.=+-.
T Consensus 4 ri~~~~~~i~~~~~~~~~~l~~lA~~~~~s~~~l~r~fk~~ 44 (107)
T 2k9s_A 4 RVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99999999997567999799999999892999999999999
No 194
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=69.57 E-value=2.2 Score=21.21 Aligned_cols=36 Identities=14% Similarity=0.021 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH--HHHHHHHH
Q ss_conf 9899999999999999819979999998724--69999998
Q gi|254780424|r 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGI--TFQQVQKY 47 (144)
Q Consensus 9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGv--s~s~is~~ 47 (144)
.|.|-.| |..++..-..|+.++|+.+|| |+++|+..
T Consensus 12 ~~~D~rI---LE~L~e~g~~t~~eIA~~lgi~~S~~~Vs~r 49 (111)
T 3b73_A 12 TIWDDRI---LEIIHEEGNGSPKELEDRDEIRISKSSVSRR 49 (111)
T ss_dssp CHHHHHH---HHHHHHHSCBCHHHHHTSTTCCSCHHHHHHH
T ss_pred CCCHHHH---HHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 6019999---9999984999999999986888479999999
No 195
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=69.44 E-value=2.3 Score=21.17 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHHHHH
Q ss_conf 9799999987246999
Q gi|254780424|r 28 MSQEKLGECLGITFQQ 43 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~ 43 (144)
-|-+++|..+|++...
T Consensus 301 pt~eeia~~l~~~~~~ 316 (438)
T 1l9z_H 301 PSYEEIAEAMGPGWDA 316 (438)
T ss_pred CHHHHHHHHHCCCHHH
T ss_conf 5068999995785267
No 196
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.4 b.82.3.2
Probab=69.25 E-value=2.5 Score=20.94 Aligned_cols=19 Identities=26% Similarity=0.448 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 9799999987246999999
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~ 46 (144)
+||+++|..+|+|+.++++
T Consensus 187 ~~~~~lA~~~g~sr~tv~R 205 (232)
T 1zyb_A 187 VKMDDLARCLDDTRLNISK 205 (232)
T ss_dssp CCHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHH
T ss_conf 8999999897989999999
No 197
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=68.78 E-value=2.2 Score=21.22 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHC
Q ss_conf 979999998724699999985289883589999999754999999506
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~ 75 (144)
+|..|+|+.+|||++++.+|-+...-+-+. ....+.+ |.|+|.
T Consensus 32 lt~~evA~~LGvs~~~V~~~i~~~~Llav~----~g~~~~i-P~~qf~ 74 (148)
T 2kfs_A 32 YDLPRVAELLGVPVSKVAQQLREGHLVAVR----RAGGVVI-PQVFFT 74 (148)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHTTSCCCEE----ETTEEEE-EGGGBC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCEEEEE----CCCEEEE-CHHHHC
T ss_conf 489999999699889999999869259997----0994884-888861
No 198
>3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP}
Probab=68.67 E-value=5.7 Score=18.59 Aligned_cols=51 Identities=12% Similarity=0.229 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 199799999987246999999852898835899999997549999995067
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144)
.|.|-.++|+..|||++++.+|=.++...=...+..+...+.-.+..++..
T Consensus 33 ~~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~ 83 (212)
T 3knw_A 33 VGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTT 83 (212)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 638799999997909999988837899999999999999999999999851
No 199
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA- binding, transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=68.52 E-value=2.4 Score=20.97 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHC-CCCCCCH--------------HH--HHHHHHHCCCCHHHH
Q ss_conf 99799999987246999999852-8988358--------------99--999997549999995
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEK-GVNRVGA--------------SR--LQHISEVLESPISFF 73 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~-G~~~ps~--------------~~--L~~iA~~l~v~~~~l 73 (144)
.||-.++|+.+|||..+|-.||+ |--.|.. .. ..+....+|+|+..+
T Consensus 2 ~msI~e~a~~~gvs~~tLRyYe~~GLl~p~~r~~~gyR~Y~~~dl~~L~~I~~lr~~G~sL~eI 65 (142)
T 3gp4_A 2 SLNIKEASEKSGVSADTIRYYERIGLIPPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEAL 65 (142)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHTSSCCCCBCTTSCBCBCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CEEHHHHHHHHCCCHHHHHHHHHCCCCCCHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 5049999999894989999999879997255268995441098999999999999869989999
No 200
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=68.08 E-value=5.9 Score=18.52 Aligned_cols=38 Identities=8% Similarity=0.090 Sum_probs=28.5
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 81997999999872469999998528988358999999
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~i 62 (144)
-.|+|-.++|+.+|||++++.+|=.++...=...+..+
T Consensus 41 ~~~~T~~~IA~~aGvs~~tlY~~F~sKe~Ll~a~~~~~ 78 (231)
T 2zcx_A 41 IREITLTDIAATVGMHKSALLRYFETREQIFLKITAEG 78 (231)
T ss_dssp STTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 24067999999979198899787599999999735889
No 201
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=68.05 E-value=2.8 Score=20.62 Aligned_cols=26 Identities=4% Similarity=0.115 Sum_probs=12.4
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 998728999999999999999999999
Q gi|254780424|r 105 RYFIQIDDVKVRQKIIELVRSIVSSEK 131 (144)
Q Consensus 105 ~~~~~l~~~~~r~~i~~l~~~l~~~e~ 131 (144)
..+..+++.+ ...+..+++.+...-+
T Consensus 110 ~~~~~l~~~e-~~~l~~~L~~i~~nl~ 135 (144)
T 1lj9_A 110 VALQGLSEVE-ISQLADYLVRMRKNVS 135 (144)
T ss_dssp HHTTTCCHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHH-HHHHHHHHHHHHHHHH
T ss_conf 9985899999-9999999999999899
No 202
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TETR family, rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=67.99 E-value=5.9 Score=18.50 Aligned_cols=41 Identities=15% Similarity=0.025 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 19979999998724699999985289883589999999754
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
-+.|-.++|+++|||++++.+|=.++...=...+......+
T Consensus 38 ~~~si~~IA~~aGvs~~tiY~hF~sK~~L~~av~~~~~~~~ 78 (215)
T 2hku_A 38 EGVPITQICAAAGAHPNQVTYYYGSKERLFVEVACAAVLRA 78 (215)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 47829999998550633488856999999999999999999
No 203
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=67.89 E-value=4 Score=19.57 Aligned_cols=61 Identities=8% Similarity=-0.036 Sum_probs=45.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 9999999981997999999872469999998528988358999999975499999950677
Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 (144)
Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~ 77 (144)
.++=..+--.|.|-.++|+.+|||+++|.+|=.++...=...+......+...+...+...
T Consensus 28 ~~lf~~~G~~~~s~~~IA~~aGvs~~sly~~F~sK~~L~~av~~~~~~~~~~~~~~~~~~~ 88 (251)
T 3npi_A 28 LSLFSELGFSDAKLEAIAKKSGMSKRMIHYHFGDKRGLYICCLEEAVRRLRPTAEEMYLAS 88 (251)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCSHHHHHHHHHHHHHHHTSCCHHHHCCSS
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999986925288999999979496678886799999999999999999999999998704
No 204
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3h3u_A*
Probab=67.86 E-value=2.7 Score=20.65 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=18.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1997999999872469999998
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~ 47 (144)
.-+||.+||..+|+|+.++++.
T Consensus 176 ~~~t~~~lA~~lg~s~~tvsr~ 197 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKA 197 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 0789999998879899999999
No 205
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=67.81 E-value=2.9 Score=20.44 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=22.9
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98199799999987246999999852
Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEK 49 (144)
Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144)
...|+|-+|.|+.+|+|..|+..+-.
T Consensus 23 l~~G~s~~eIA~~L~iS~~TV~~h~~ 48 (74)
T 1fse_A 23 LVQDKTTKEIASELFISEKTVRNHIS 48 (74)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99279999999997989999999999
No 206
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=67.64 E-value=3.2 Score=20.21 Aligned_cols=35 Identities=14% Similarity=0.144 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 997999999872469999998528988358999999
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~i 62 (144)
|-.=+.||.++|++...|..+++.. +|+...|..-
T Consensus 21 g~dWr~LA~~Lgl~~~~I~~i~~~~-spt~~lL~~W 55 (85)
T 1ngr_A 21 GDTWRHLAGELGYQPEHIDSFTHEA-CPVRALLASW 55 (85)
T ss_dssp TTHHHHHHHHTTCCHHHHHHHHHSS-CHHHHHHHHG
T ss_pred CCCHHHHHHHCCCCHHHHHHHHCCC-CHHHHHHHHH
T ss_conf 7768999989398999999884389-8599999999
No 207
>2krf_A Transcriptional regulatory protein COMA; activator, competence, DNA-binding, transcription regulation component regulatory system; NMR {Bacillus subtilis}
Probab=67.56 E-value=5.4 Score=18.78 Aligned_cols=27 Identities=7% Similarity=0.254 Sum_probs=23.1
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 981997999999872469999998528
Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKG 50 (144)
Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G 50 (144)
...|+|-+|.|+.+|+|..++..+-..
T Consensus 24 ~~~G~s~~eIA~~l~iS~~TV~~~~~~ 50 (73)
T 2krf_A 24 VEKGFTNQEIADALHLSKRSIEYSLTS 50 (73)
T ss_dssp HHTTSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 995899999841618889999999999
No 208
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=67.47 E-value=2.8 Score=20.60 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=15.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1997999999872469999998
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~ 47 (144)
..+||.++|+.+|+|+.++++.
T Consensus 145 ~~~t~~~iA~~lg~sr~tv~r~ 166 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKV 166 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 7887999998979889999999
No 209
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=67.22 E-value=2.8 Score=20.57 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=24.9
Q ss_pred HHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999---81997999999872469999998528
Q gi|254780424|r 15 VGKRIRLRRM---ILGMSQEKLGECLGITFQQVQKYEKG 50 (144)
Q Consensus 15 iG~rIr~~R~---~~glTQ~eLA~~lGvs~s~is~~E~G 50 (144)
.....+.++. ...+|.++||+.+|+|+++++++=+-
T Consensus 78 ~~~v~~~~~~~~~~~~~sl~~la~~~g~S~~~l~R~Fk~ 116 (133)
T 1u8b_A 78 LDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKA 116 (133)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHH
T ss_conf 899999999970479999999942619899999999999
No 210
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=67.00 E-value=2.8 Score=20.56 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHC-CCCCCCH--------------H--HHHHHHHHCCCCHHHH
Q ss_conf 9799999987246999999852-8988358--------------9--9999997549999995
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEK-GVNRVGA--------------S--RLQHISEVLESPISFF 73 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~-G~~~ps~--------------~--~L~~iA~~l~v~~~~l 73 (144)
|+-.|+|+..|||..||-.||+ |--.|.. . .+.+.++.+|+|+..+
T Consensus 1 M~Ige~Ak~~gvs~~tlRyYe~~GLl~p~~r~~~gyR~Y~~~~v~rL~~I~~lr~~G~sl~~I 63 (135)
T 1q06_A 1 MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEES 63 (135)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHTTCSCCCEECTTSCEECCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 978999999891999999999978969876687777115398999999999998839999999
No 211
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus}
Probab=66.83 E-value=5.8 Score=18.58 Aligned_cols=34 Identities=12% Similarity=0.059 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999981997999999872469999998
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
.=-+.|...=...++.+.+.|+.+||+++++.+.
T Consensus 19 ~E~~~I~~aL~~~~gn~s~aA~~Lgi~r~tL~~k 52 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRK 52 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9999999999991998999999989799999999
No 212
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=66.76 E-value=6.3 Score=18.35 Aligned_cols=51 Identities=8% Similarity=0.028 Sum_probs=38.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHC
Q ss_conf 819979999998724699999985289883589999999754999999506
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~ 75 (144)
-.+.|-.++|++.|||++++.+|=.++...=...+..+..-+.-.+.....
T Consensus 22 ~~~~s~~~IA~~AGvs~~siY~yF~~K~~L~~a~~~~~~~~~~~~~~~~~~ 72 (185)
T 2yve_A 22 LETLSYDSLAEATGLSKSGLIYHFPSRHALLLGMHELLADDWDKELRDITR 72 (185)
T ss_dssp STTCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 051779999998683853130668999999999999999999999999872
No 213
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=66.75 E-value=2.9 Score=20.50 Aligned_cols=27 Identities=15% Similarity=0.256 Sum_probs=22.8
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 998199799999987246999999852
Q gi|254780424|r 23 RMILGMSQEKLGECLGITFQQVQKYEK 49 (144)
Q Consensus 23 R~~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144)
-...|+|..|.|+.+|+|.+|+..+-+
T Consensus 27 ~l~~G~s~~eIA~~l~iS~~TV~~~~~ 53 (79)
T 1x3u_A 27 AVVAGLPNKSIAYDLDISPRTVEVHRA 53 (79)
T ss_dssp HHTTTCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999079999999997988989999999
No 214
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=66.73 E-value=3.4 Score=20.08 Aligned_cols=30 Identities=7% Similarity=0.086 Sum_probs=19.6
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999981997999999872469999998
Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
-|..+...-|+|+.++|+.+++++++++++
T Consensus 53 iL~~L~~~~~~s~~ela~~~~~~~stvs~~ 82 (207)
T 2fxa_A 53 ILWIAYQLNGASISEIAKFGVMHVSTAFNF 82 (207)
T ss_dssp HHHHHHHHTSEEHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999999769949999999988698799999
No 215
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=66.58 E-value=2.6 Score=20.80 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHC-CCCCCC-----------HH-----HHHHHHHHCCCCHHHH
Q ss_conf 9799999987246999999852-898835-----------89-----9999997549999995
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEK-GVNRVG-----------AS-----RLQHISEVLESPISFF 73 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~-G~~~ps-----------~~-----~L~~iA~~l~v~~~~l 73 (144)
+|-.|+|+.+|||.++|-.||+ |--.|. .. .+.+....+|+|++.+
T Consensus 2 ytI~e~a~~~gvs~~tLR~Ye~~GLl~p~~r~~~gyR~Y~~~~~~~l~~I~~lr~~G~sl~eI 64 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVRTLHHYDDIGLLVPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEV 64 (108)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHTSSCCSEECSSCCEEBCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 508999999895999999983258999872089984247879899999999999969999999
No 216
>3lwj_A Putative TETR-family transcriptional regulator; structural genomics, joint center for structural genomics, JCSG; 2.07A {Syntrophomonas wolfei subsp}
Probab=66.34 E-value=6.4 Score=18.30 Aligned_cols=42 Identities=7% Similarity=-0.005 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf 199799999987246999999852898835899999997549
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~ 67 (144)
.+.|-.++|++.|||++++.+|=.++...=...+......+.
T Consensus 31 ~~~ti~~Ia~~agvs~~t~Y~~F~~Ke~L~~~~~~~~~~~~~ 72 (202)
T 3lwj_A 31 YNTSIRDIIALSEVGTGTFYNYFVDKEDILKNLLEDFAKQII 72 (202)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 517599999987929999988669999999999999999877
No 217
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=66.21 E-value=6.1 Score=18.42 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=21.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999998199799999987246999999
Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144)
.|+..=..-+..|.+.|+.+|+|++++.+
T Consensus 62 ~I~~aL~~~~gn~~~aA~~LGisR~tL~~ 90 (98)
T 1eto_A 62 LLDMVMQYTLGNQTRAALMMGINRGTLRK 90 (98)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHH
T ss_conf 99999999199889999997989999999
No 218
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=65.92 E-value=2.8 Score=20.56 Aligned_cols=43 Identities=9% Similarity=0.082 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9989999999999999981-----9979999998724699999985289
Q gi|254780424|r 8 PNPVDINVGKRIRLRRMIL-----GMSQEKLGECLGITFQQVQKYEKGV 51 (144)
Q Consensus 8 ~~~~d~~iG~rIr~~R~~~-----glTQ~eLA~~lGvs~s~is~~E~G~ 51 (144)
||..| .|-+.||++=.+. -+.-.|||++.+|.+|+|+.+-+.+
T Consensus 1 pNlSD-~IE~yik~lL~~s~~~~ieI~R~eLA~~F~CvPSQINYVl~TR 48 (155)
T 3h0d_A 1 PNISD-IIEQYLKQVLNMSDQDIVEIKRSEIANKFRCVPSQINYVINTR 48 (155)
T ss_dssp CCHHH-HHHHHHHHHHTTSSSSEEEECHHHHHHHTTSCTHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHHHHCCCCEEEEEHHHHHHHCCCCCCCCCEEECCC
T ss_conf 97579-9999999999748699399648988873696753272665466
No 219
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=65.80 E-value=2.3 Score=21.11 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=11.2
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9987289999999999999999999
Q gi|254780424|r 105 RYFIQIDDVKVRQKIIELVRSIVSS 129 (144)
Q Consensus 105 ~~~~~l~~~~~r~~i~~l~~~l~~~ 129 (144)
..+..+++.+ +..+..+++.+...
T Consensus 135 ~l~~~ls~~e-~~~l~~~L~~l~~n 158 (166)
T 3deu_A 135 EILAGISSEE-IELLIKLIAKLEHN 158 (166)
T ss_dssp HHHTTCCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHH-HHHHHHHHHHHHHH
T ss_conf 9994899999-99999999999999
No 220
>3mop_A Myeloid differentiation primary response protein; death domain complex, helical symmetry, single-stranded HELI assembly; 3.40A {Homo sapiens}
Probab=65.49 E-value=3.7 Score=19.80 Aligned_cols=43 Identities=9% Similarity=0.116 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 99999987246999999852898835899999997549999995
Q gi|254780424|r 30 QEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 30 Q~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
=+.||..+|++...|..++.. .+|+...|.....--+.++..|
T Consensus 29 Wr~LA~~Lg~~~~~I~~~~~~-~sPt~~lL~~w~~~~~~Tv~~L 71 (110)
T 3mop_A 29 WTALAEEMDFEYLEIRQLETQ-ADPTGRLLDAWQGRPGASVGRL 71 (110)
T ss_dssp HHHHHTTTTCCHHHHHHHTSS-SSHHHHHHHHHHSSSSCSHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHCC-CCCHHHHHHHHHCCCCCCHHHH
T ss_conf 999998949899999988508-9949999999970899859999
No 221
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 3loc_A*
Probab=65.40 E-value=6.6 Score=18.18 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHH
Q ss_conf 1997999999872469999998528988358999999975499999
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~ 71 (144)
.|.|-.++|+..|||++++.+|=.++...=...+..+...+.....
T Consensus 37 ~~~si~~IA~~agvs~~tiY~yF~sKe~L~~~~~~~~~~~~~~~~~ 82 (212)
T 1pb6_A 37 HGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLK 82 (212)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5288999999979198789787799999999878999999999999
No 222
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=65.09 E-value=3.5 Score=19.94 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.2
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 998199799999987246999999852
Q gi|254780424|r 23 RMILGMSQEKLGECLGITFQQVQKYEK 49 (144)
Q Consensus 23 R~~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144)
=.-.|-+|.++|..+|+|++.+|+.-+
T Consensus 30 VLV~G~~~~evA~~~Glskq~V~~~V~ 56 (101)
T 2w7n_A 30 VLVDGKPQATFATSLGLTRGAVSQAVH 56 (101)
T ss_dssp HHTTCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCHHHHHHHHHH
T ss_conf 984884099999996803889999999
No 223
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1}
Probab=64.85 E-value=2.6 Score=20.77 Aligned_cols=15 Identities=7% Similarity=0.000 Sum_probs=7.4
Q ss_pred HHHHHHHCCCCHHHH
Q ss_conf 999997549999995
Q gi|254780424|r 59 LQHISEVLESPISFF 73 (144)
Q Consensus 59 L~~iA~~l~v~~~~l 73 (144)
...||+.++++...+
T Consensus 57 ~~ela~~l~~~~~~v 71 (150)
T 3fm5_A 57 QRGVAATMGLDPSQI 71 (150)
T ss_dssp SHHHHHHHTCCHHHH
T ss_pred HHHHHHHHCCCHHHH
T ss_conf 999999978878778
No 224
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=64.09 E-value=2.6 Score=20.84 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.3
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 981997999999872469999998528
Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKG 50 (144)
Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G 50 (144)
...|+|-+|.|+.+|+|..|+..+-..
T Consensus 10 l~~G~s~~eIA~~l~iS~~TV~~h~~~ 36 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMN 36 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 982799999998969899999999999
No 225
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=63.87 E-value=2.3 Score=21.18 Aligned_cols=63 Identities=6% Similarity=-0.118 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 8999999999999998199799999987246999999852898835899999997549999995
Q gi|254780424|r 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 10 ~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
-+|.+++-.|+..-....---.......|+|.+++.-+..=...+.. +...||+.++++..-+
T Consensus 12 ~l~~~l~~ll~~~~~~~~~~~~~~l~~~gLt~~q~~iL~~l~~~~~~-t~~eLa~~l~~~~~tv 74 (155)
T 3cdh_A 12 FVSGYLLYLLAASSEEASAQFHDHIRAQGLRVPEWRVLACLVDNDAM-MITRLAKLSLMEQSRM 74 (155)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCSCB-CHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC-CHHHHHHHHCCCHHHH
T ss_conf 27769999999999999999999998829699999999999857996-9999999989699889
No 226
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A
Probab=63.83 E-value=2.8 Score=20.57 Aligned_cols=15 Identities=13% Similarity=0.045 Sum_probs=8.8
Q ss_pred HHHHHHHCCCCHHHH
Q ss_conf 999997549999995
Q gi|254780424|r 59 LQHISEVLESPISFF 73 (144)
Q Consensus 59 L~~iA~~l~v~~~~l 73 (144)
...||+.++++.+.+
T Consensus 54 ~~~la~~l~i~~~~v 68 (151)
T 3kp7_A 54 VGQITEKQGVNKAAV 68 (151)
T ss_dssp HHHHHHHHCSCSSHH
T ss_pred HHHHHHHHCCCHHHH
T ss_conf 999999989688899
No 227
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=63.80 E-value=2.9 Score=20.50 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 199799999987246999999852
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEK 49 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~ 49 (144)
.|.+..++|..+||+.+++.+|=+
T Consensus 29 ~g~~~~~va~~Lgi~~~tl~~Wv~ 52 (108)
T 2rn7_A 29 QWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 555199999997979999999999
No 228
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=63.71 E-value=4.2 Score=19.47 Aligned_cols=48 Identities=15% Similarity=0.069 Sum_probs=23.5
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHH---H-HHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 99999819979999998724699999---9-852898835899999997549999995
Q gi|254780424|r 20 RLRRMILGMSQEKLGECLGITFQQVQ---K-YEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 20 r~~R~~~glTQ~eLA~~lGvs~s~is---~-~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
+..|....+-...++ ..|++.+.+. . +++|.. + ...||+.++++...+
T Consensus 16 ~~~~~~~~~~~~~l~-~~glt~~q~~vL~~l~~~~~~--~---~~~la~~l~i~~~~v 67 (142)
T 2fbi_A 16 QAREAAMSFFRPSLN-QHGLTEQQWRVIRILRQQGEM--E---SYQLANQACILRPSM 67 (142)
T ss_dssp HHHHHHHTTTHHHHH-HHTCCHHHHHHHHHHHHHCSE--E---HHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHCCCC--C---HHHHHHHHCCCHHHH
T ss_conf 999999999999998-849899999999999987997--9---999999979898899
No 229
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=63.31 E-value=7.2 Score=17.95 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=29.7
Q ss_pred HHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 999999819---97999999872469999998528988358999999975
Q gi|254780424|r 19 IRLRRMILG---MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 (144)
Q Consensus 19 Ir~~R~~~g---lTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144)
++-+..++| .|-.++|+..|||++++.+|=.++...=...+..+...
T Consensus 21 ~~l~~~e~G~~~~S~~~IA~~aGvs~~tlY~yF~sK~~Ll~a~~~~~~~~ 70 (220)
T 3lsj_A 21 RHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMDQLGLALVAEVDET 70 (220)
T ss_dssp HHHTTTSCCGGGCCHHHHHHHHTSCGGGGTTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99998759925411999999989297888886799999999999999999
No 230
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987}
Probab=62.61 E-value=1.5 Score=22.41 Aligned_cols=20 Identities=5% Similarity=-0.102 Sum_probs=7.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHH
Q ss_conf 987289999999999999999
Q gi|254780424|r 106 YFIQIDDVKVRQKIIELVRSI 126 (144)
Q Consensus 106 ~~~~l~~~~~r~~i~~l~~~l 126 (144)
.+..+++++ .+.+..+++.+
T Consensus 115 ~~~~l~~ee-~~~l~~~L~k~ 134 (139)
T 3bja_A 115 NCGCFTKEE-EGILEDLLLKW 134 (139)
T ss_dssp HHCCSCHHH-HHHHHHHHHHH
T ss_pred HHHCCCHHH-HHHHHHHHHHH
T ss_conf 986899999-99999999999
No 231
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=62.23 E-value=6.9 Score=18.07 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=3.9
Q ss_pred HHHHHHHCCC
Q ss_conf 9999872899
Q gi|254780424|r 103 LNRYFIQIDD 112 (144)
Q Consensus 103 l~~~~~~l~~ 112 (144)
+...+..+++
T Consensus 134 l~~~l~~L~~ 143 (194)
T 1or7_A 134 VFRTIESLPE 143 (194)
T ss_dssp HHHHHHHSCH
T ss_pred HHHHHHCCCH
T ss_conf 9999870999
No 232
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, protein-DNA complex, , DNA binding protein/DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=62.06 E-value=4.7 Score=19.16 Aligned_cols=27 Identities=30% Similarity=0.132 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 997999999872469999998528988
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNR 53 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~ 53 (144)
.-|+.++|+.+||+.++|+.+-+|++.
T Consensus 135 f~S~~eaa~~~gv~~~~I~~~~~gk~~ 161 (174)
T 1u3e_M 135 YPSTKCACEELGLTRGKVTDVLKGHRI 161 (174)
T ss_dssp ESCHHHHHHHHTCCHHHHHHHHHTSSS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 689999999979898899999738876
No 233
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=62.03 E-value=4.8 Score=19.09 Aligned_cols=45 Identities=9% Similarity=0.102 Sum_probs=28.9
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHHHCCC
Q ss_conf 981997999999872469999998528----988358999999975499
Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKG----VNRVGASRLQHISEVLES 68 (144)
Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G----~~~ps~~~L~~iA~~l~v 68 (144)
...|+|-.+.|+.+|+|.+|+..+-+. ..--+..-|...|..+|+
T Consensus 46 l~~G~s~~eIA~~l~iS~~TV~~~~~~i~~KL~v~~~~elv~~a~~~Gl 94 (99)
T 1p4w_A 46 FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSM 94 (99)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTC
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf 9938999999777299899999999999998099999999999999689
No 234
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=61.90 E-value=3.9 Score=19.66 Aligned_cols=49 Identities=10% Similarity=0.064 Sum_probs=35.9
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCCH--------------HH--HHHHHHHCCCCHHHH
Q ss_conf 8199799999987246999999852-8988358--------------99--999997549999995
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEK-GVNRVGA--------------SR--LQHISEVLESPISFF 73 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~-G~~~ps~--------------~~--L~~iA~~l~v~~~~l 73 (144)
...+|-.++|+.+|||..|+-.||+ |--.|+. .. ..+..+.+|+|+..+
T Consensus 2 ~~~Y~Igeva~~~gvs~~TLRyYe~~GLl~P~~r~~~gyR~Yt~~dl~~l~~I~~lr~~G~sl~eI 67 (146)
T 3hh0_A 2 SLAWLISEFASVGDVTVRALRYYDKINLLKPSDYTEGGHRLYTKDDLYVLQQIQSFKHLGFSLGEI 67 (146)
T ss_dssp -CCBCHHHHHHHHTCCHHHHHHHHHTTSSCCSEECTTSCEEBCHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 987739999999895988999999879989770089997226899999999999999969999999
No 235
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=61.65 E-value=7.8 Score=17.75 Aligned_cols=40 Identities=10% Similarity=-0.022 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 1997999999872469999998528988358999999975
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144)
.|.|-.++|++.|||++++.+|=.++...=...+......
T Consensus 28 ~~~s~~~Ia~~agvs~~tiY~~F~~K~~L~~~~~~~~~~~ 67 (215)
T 1ui5_A 28 ESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRT 67 (215)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 5187999999868782118761699999999999999999
No 236
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=61.55 E-value=7.8 Score=17.73 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf 199799999987246999999852898835899999997549
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~ 67 (144)
.|+|-.++|+++|||++++.+|=.++...=...+..+...+.
T Consensus 36 ~~~ti~~IA~~agvs~~t~Y~yF~sKe~L~~~~~~~~~~~~~ 77 (206)
T 3kz9_A 36 GRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFS 77 (206)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 417799999987909989969809999999999998899999
No 237
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=61.48 E-value=4.6 Score=19.21 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=22.7
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 981997999999872469999998528
Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKG 50 (144)
Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G 50 (144)
...|+|-.|+|+.+|+|..|+..+-+.
T Consensus 33 la~G~s~~eIA~~L~iS~~TV~~~~~~ 59 (82)
T 1je8_A 33 IAQGLPNKMIARRLDITESTVKVHVKH 59 (82)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 992899999998979599999999999
No 238
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis}
Probab=61.45 E-value=5.1 Score=18.92 Aligned_cols=24 Identities=8% Similarity=0.052 Sum_probs=19.2
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 981997999999872469999998
Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
...+++-.++|+.+|+|++++|+-
T Consensus 38 ~~~~~~v~el~~~l~~s~stvS~H 61 (99)
T 2zkz_A 38 KHKALNVTQIIQILKLPQSTVSQH 61 (99)
T ss_dssp HHSCEEHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 789927999899888497699999
No 239
>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=61.20 E-value=5.3 Score=18.79 Aligned_cols=26 Identities=12% Similarity=0.342 Sum_probs=22.4
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98199799999987246999999852
Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEK 49 (144)
Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144)
...|+|-+|+|+.+|+|..|+..+=+
T Consensus 39 l~~G~s~~eIA~~L~iS~~TV~~~~~ 64 (95)
T 3c57_A 39 LSEGLTNKQIADRMFLAEKTVKNYVS 64 (95)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 99079999998794978999999999
No 240
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=61.11 E-value=3.4 Score=20.03 Aligned_cols=48 Identities=13% Similarity=0.066 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC-CCCC--------------HHH--HHHHHHHCCCCHHHH
Q ss_conf 19979999998724699999985289-8835--------------899--999997549999995
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGV-NRVG--------------ASR--LQHISEVLESPISFF 73 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~-~~ps--------------~~~--L~~iA~~l~v~~~~l 73 (144)
.-+|-.|+|+.+|||.++|-.||+-. -.|. +.. ..+..+.+|.|+..+
T Consensus 15 m~ytIgevA~~~gvs~~tLRyYE~~GLl~p~~r~~ngyR~Y~~~di~~l~~I~~lr~~G~sL~eI 79 (148)
T 3gpv_A 15 MYYTIGQVAKMQHLTISQIRYYDKQGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTGMPIQKI 79 (148)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHHHHTTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 77659999999895999999999879918410057886016488899999999999969999999
No 241
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=60.79 E-value=4.1 Score=19.52 Aligned_cols=16 Identities=6% Similarity=-0.099 Sum_probs=9.3
Q ss_pred HHHHHHHHCCCCHHHH
Q ss_conf 9999997549999995
Q gi|254780424|r 58 RLQHISEVLESPISFF 73 (144)
Q Consensus 58 ~L~~iA~~l~v~~~~l 73 (144)
+...||+.++++...+
T Consensus 69 t~~~la~~l~i~~~~v 84 (161)
T 3e6m_A 69 TVGQLATLGVMEQSTT 84 (161)
T ss_dssp EHHHHHHHTTCCHHHH
T ss_pred CHHHHHHHHCCCHHHH
T ss_conf 9999999989788799
No 242
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=60.65 E-value=4.3 Score=19.37 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=8.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 199799999987246999999
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~ 46 (144)
.|+|-+|.|+++|+|..|+..
T Consensus 173 ~G~snkeIA~~L~iS~~TVk~ 193 (225)
T 3klo_A 173 SGASNIEIADKLFVSENTVKT 193 (225)
T ss_dssp TTCCHHHHHHHTTCCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
T ss_conf 399799999997889999999
No 243
>3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A*
Probab=60.36 E-value=8.2 Score=17.60 Aligned_cols=48 Identities=15% Similarity=0.142 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 997999999872469999998528988358999999975499999950
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~ 74 (144)
++|-+++|+++|||++++..|=.++...=...+..+...+.-.+..++
T Consensus 64 ~~Tl~~IA~~aGvs~~tlY~~F~sK~~L~~av~~~~~~~~~~~~~~~~ 111 (256)
T 3g1l_A 64 DISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLA 111 (256)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 176999999989099999888288999999999999999999999986
No 244
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP}
Probab=60.10 E-value=3.2 Score=20.24 Aligned_cols=41 Identities=12% Similarity=0.018 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 19979999998724699999985289883589999999754
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
.++|..++|+.+|||++++.+|=.++...-...+......+
T Consensus 33 ~~~s~~~IA~~agvs~~t~Y~~F~~K~~Ll~~~~~~~~~~~ 73 (203)
T 3f1b_A 33 HETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQREGLRF 73 (203)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 52879999999890988887881998999999999999999
No 245
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=59.78 E-value=4.1 Score=19.55 Aligned_cols=58 Identities=5% Similarity=-0.040 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 999999999998199799999987246999999852898835899999997549999995
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
++...+..+.....-...+.....|++...+.-+..=...| -+...||+.++++....
T Consensus 10 ~l~~~l~~~~~~~~~~~~~~~~~~~lt~~q~~vL~~i~~~~--~t~~ela~~~~i~~~~v 67 (146)
T 2gxg_A 10 QIMSTIAKIYRAMSRELNRRLGELNLSYLDFLVLRATSDGP--KTMAYLANRYFVTQSAI 67 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTSC--BCHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC--CCHHHHHHHHCCCHHHH
T ss_conf 99999999999999999998867697999999999998599--19999999989798699
No 246
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1
Probab=59.67 E-value=8.4 Score=17.53 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 7668998999999999999998199799999987246999999852898835899999997549999995067
Q gi|254780424|r 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 (144)
Q Consensus 4 ~~~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~ 76 (144)
.++.+...|..+=+.|+.+|. ++|...|+.+..| .+-..|..||...=.+++.|...
T Consensus 4 ~~~~~~~~d~~L~~~L~~~R~-------~~A~~~~vp~~~V---------~s~~~L~~ia~~~P~t~~eL~~I 60 (89)
T 1wud_A 4 QKSFGGNYDRKLFAKLRKLRK-------SIADESNVPPYVV---------FNDATLIEMAEQMPITASEMLSV 60 (89)
T ss_dssp ------CCCHHHHHHHHHHHH-------HHHHHHTSCHHHH---------CCHHHHHHHHHHCCCSHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHH-------HHHHHCCCCCCCC---------CCHHHHHHHHHHCCCCHHHHCCC
T ss_conf 667888510999999999999-------9999839895556---------57999999999788999998079
No 247
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP}
Probab=59.37 E-value=4.9 Score=19.00 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=21.9
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8199799999987246999999852
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEK 49 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144)
..++|..|+|+.+|+++++++++-+
T Consensus 27 ~~~~~~~eia~~~gl~~st~~RlL~ 51 (257)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRILL 51 (257)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 9998999999987939999999999
No 248
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H 1ku2_A 3lev_A* 3les_A*
Probab=59.03 E-value=3 Score=20.42 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHHHH
Q ss_conf 979999998724699
Q gi|254780424|r 28 MSQEKLGECLGITFQ 42 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s 42 (144)
-|.+++|..+|++..
T Consensus 286 pt~eeiA~~l~~~~~ 300 (423)
T 2a6h_F 286 PTYEEIAEAMGPGWD 300 (423)
T ss_dssp CCHHHHHHHHCTTCC
T ss_pred CCHHHHHHHHCCCHH
T ss_conf 507999999678504
No 249
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor A3}
Probab=58.75 E-value=4.9 Score=19.01 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHH-CCCCCC
Q ss_conf 979999998724699999985-289883
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYE-KGVNRV 54 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E-~G~~~p 54 (144)
|.-.|||+.+|||.++|-.|| .|--.|
T Consensus 1 MrI~elA~~~Gvs~~tLR~Ye~~GLL~p 28 (222)
T 2dg6_A 1 MRLADLSKRSGVSTATIKYYLREGLLPP 28 (222)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHTSSCC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCC
T ss_conf 9589999998959999999998799798
No 250
>2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=58.43 E-value=4.7 Score=19.14 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=28.5
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 8199799999987246999999852898835899999997
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144)
-.+.|-.++|+.+|||++++.+|=.++...=...+.....
T Consensus 26 ~~~~t~~~IA~~agvs~~tiY~~F~sK~~L~~av~~~~~~ 65 (199)
T 2o7t_A 26 HDSLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQYLFN 65 (199)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 1407799999986869131776089999999999999999
No 251
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A
Probab=58.34 E-value=1.9 Score=21.70 Aligned_cols=16 Identities=6% Similarity=0.075 Sum_probs=7.7
Q ss_pred HHHHHHHHCCCCHHHH
Q ss_conf 9999997549999995
Q gi|254780424|r 58 RLQHISEVLESPISFF 73 (144)
Q Consensus 58 ~L~~iA~~l~v~~~~l 73 (144)
+...||+.++++...+
T Consensus 52 t~~ela~~l~~~~~tv 67 (140)
T 3hsr_A 52 NIKKLGERVFLDSGTL 67 (140)
T ss_dssp EHHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHCCCHHHH
T ss_conf 9999999989786479
No 252
>1d2z_A Death domain of pelle; six-helix bundle, linear array of death domains, plastic interfaces, apoptosis; HET: EPE; 2.00A {Drosophila melanogaster} SCOP: a.77.1.2 PDB: 1ik7_A 1ygo_A
Probab=58.21 E-value=8.9 Score=17.37 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHC---CCCCCCHHHHHHHHHHCCCCHHHHHC
Q ss_conf 799999987246999999852---89883589999999754999999506
Q gi|254780424|r 29 SQEKLGECLGITFQQVQKYEK---GVNRVGASRLQHISEVLESPISFFFD 75 (144)
Q Consensus 29 TQ~eLA~~lGvs~s~is~~E~---G~~~ps~~~L~~iA~~l~v~~~~l~~ 75 (144)
.=+.||..+|.+...|..++. ....|+...|..-..--+.++..|+.
T Consensus 33 ~Wr~LA~~Lg~~~~~I~~i~~~~~~~~sPt~~LL~~W~~~~~~Tv~~L~~ 82 (108)
T 1d2z_A 33 VWQQLATAVKLYPDQVEQISSQKQRGRSASNEFLNIWGGQYNHTVQTLFA 82 (108)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCCBHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 59999999598999999998732668886999999998075570999999
No 253
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=58.14 E-value=4 Score=19.59 Aligned_cols=44 Identities=11% Similarity=0.012 Sum_probs=32.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
Q ss_conf 81997999999872469999998528988358999999975499
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v 68 (144)
-.+.|-.++|++.|||++++.+|=.++...=...+..+...+.-
T Consensus 27 ~~~~ti~~Ia~~agvs~~tiY~~F~sKe~L~~~~~~~~~~~~~~ 70 (203)
T 3cdl_A 27 FEITSMDRIAARAEVSKRTVYNHFPSKEELFAEMLQRLWNCAPP 70 (203)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHTTSSSHHHHHHHHHHHHHHTC--
T ss_pred CCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 05078999999868595525521898699999999999999999
No 254
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=58.04 E-value=4.8 Score=19.10 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=22.6
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 998199799999987246999999852
Q gi|254780424|r 23 RMILGMSQEKLGECLGITFQQVQKYEK 49 (144)
Q Consensus 23 R~~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144)
....|+|-.|.|+.+|+|.+||..+-+
T Consensus 40 ll~~G~s~~eIA~~L~iS~~TV~~~~~ 66 (91)
T 2rnj_A 40 LIAKGYSNQEIASASHITIKTVKTHVS 66 (91)
T ss_dssp HHHTTCCTTHHHHHHTCCHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999289999999997889999999999
No 255
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=57.44 E-value=5.9 Score=18.53 Aligned_cols=44 Identities=18% Similarity=0.064 Sum_probs=23.7
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 999998199799999987246999999852898835899999997549999995
Q gi|254780424|r 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 20 r~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
+.++...|||..++.-..-+ |++.....+ ...||+.++++...+
T Consensus 27 ~~~~~~~~lt~~q~~iL~~l-------~~~~~~~~t---~~ela~~l~~~~~~v 70 (127)
T 2frh_A 27 SLIKKEFSISFEEFAVLTYI-------SENKEKEYY---LKDIINHLNYKQPQV 70 (127)
T ss_dssp HHHHHTTCCCHHHHHHHHHH-------HHTCCSEEE---HHHHHHHSSSHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHH-------HHCCCCCCC---HHHHHHHHCCCHHHH
T ss_conf 99998859799999999999-------828999878---999999979887369
No 256
>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12}
Probab=57.00 E-value=3.1 Score=20.30 Aligned_cols=30 Identities=20% Similarity=0.238 Sum_probs=21.3
Q ss_pred HHHHHHH---HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999---81997999999872469999998
Q gi|254780424|r 18 RIRLRRM---ILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 18 rIr~~R~---~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
|++=++. .-+++-.+||+.+|+|++++|+.
T Consensus 26 Rl~Il~~L~~~~~~~v~eLa~~l~~s~stvS~H 58 (99)
T 3cuo_A 26 RLLILCMLSGSPGTSAGELTRITGLSASATSQH 58 (99)
T ss_dssp HHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHH
T ss_conf 999999985899907999774558598799999
No 257
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=56.97 E-value=9.3 Score=17.24 Aligned_cols=41 Identities=10% Similarity=-0.059 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 19979999998724699999985289883589999999754
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
.+.|-+++|+..|||++++.+|=.++...=...+......+
T Consensus 29 ~~~s~~~IA~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~ 69 (197)
T 2f07_A 29 DKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHT 69 (197)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSSTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 40769999998786911588864999999999999999999
No 258
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=56.45 E-value=9.5 Score=17.18 Aligned_cols=13 Identities=8% Similarity=-0.043 Sum_probs=4.8
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999998199
Q gi|254780424|r 16 GKRIRLRRMILGM 28 (144)
Q Consensus 16 G~rIr~~R~~~gl 28 (144)
...++.+....|+
T Consensus 22 ~~~l~~~~~~~Gf 34 (234)
T 1l3l_A 22 KTGLADIADHFGF 34 (234)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999997799
No 259
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=56.00 E-value=9.7 Score=17.14 Aligned_cols=52 Identities=10% Similarity=0.047 Sum_probs=34.7
Q ss_pred HHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 99999999998--19979999998724699999985289883589999999754
Q gi|254780424|r 15 VGKRIRLRRMI--LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 15 iG~rIr~~R~~--~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
|.--++-+.+. .+.|-+++|+.+|||++++.+|=.++...=...+......+
T Consensus 14 l~aa~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sKe~L~~~~~~~~~~~~ 67 (206)
T 1vi0_A 14 IDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQF 67 (206)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 999999998739030679999999794999999991872899999999887799
No 260
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=55.69 E-value=6.4 Score=18.28 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 19979999998724699999985289883
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRV 54 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~p 54 (144)
.++|-.++|+..|||++++.+|=.++...
T Consensus 31 ~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L 59 (192)
T 2fq4_A 31 KAVTVDKIAERAKVSKATIYKWWPNKAAV 59 (192)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf 40779999999891998885347899999
No 261
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=54.86 E-value=5.5 Score=18.71 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.9
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 81997999999872469999998
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
..++|..|+|+.+|+++++++++
T Consensus 21 ~~~~tl~eia~~lglpksT~~Rl 43 (249)
T 1mkm_A 21 PGDVSVSEIAEKFNMSVSNAYKY 43 (249)
T ss_dssp SSCBCHHHHHHHTTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 99989999999879199999999
No 262
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=54.81 E-value=6.9 Score=18.09 Aligned_cols=41 Identities=12% Similarity=-0.002 Sum_probs=29.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 19979999998724699999985289883589999999754
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
.+.|-.++|+.+|||++++.+|=.++...=...+......+
T Consensus 30 ~~~si~~Ia~~agvs~~tiY~~F~sK~~L~~~v~~~~~~~~ 70 (210)
T 2wui_A 30 GTTAMADLADAAGVSRGAVYGHYKNKIEVCLAMCDRAFGQI 70 (210)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 61759999998787977444478999999999999999999
No 263
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=54.72 E-value=6.1 Score=18.41 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=29.1
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 998199799999987246999999852898835899999
Q gi|254780424|r 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 (144)
Q Consensus 23 R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~ 61 (144)
+--.|+|-.++|+++|||++++.+|=.++...=...+..
T Consensus 24 ~G~~~~t~~~IA~~agvs~~tlY~~F~sKe~L~~av~~~ 62 (202)
T 2d6y_A 24 HGIAGARIDRIAAEARANKQLIYAYYGNKGELFASVLEK 62 (202)
T ss_dssp HTTTSCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf 590408799999997909889968869999999999999
No 264
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=54.68 E-value=10 Score=17.05 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=29.4
Q ss_pred HHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 9999999999--819979999998724699999985289883589
Q gi|254780424|r 15 VGKRIRLRRM--ILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 (144)
Q Consensus 15 iG~rIr~~R~--~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~ 57 (144)
|-+-+..+.. ...+|.++||+.+|+|..++++.=+.....+..
T Consensus 9 l~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~g~s~~ 53 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYLGTVPS 53 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHH
T ss_conf 999999999755899999999999891999999999860799999
No 265
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=54.61 E-value=7.5 Score=17.83 Aligned_cols=26 Identities=19% Similarity=0.544 Sum_probs=22.3
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98199799999987246999999852
Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEK 49 (144)
Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144)
-..|+|..++|..+|||..-+-+|-.
T Consensus 28 a~~gysvqqIa~~LGVsvrKv~~YLE 53 (55)
T 2x48_A 28 AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHCHHHHHHHHHHH
T ss_conf 98487299999884611999999874
No 266
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=54.41 E-value=2.1 Score=21.34 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=4.4
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 79999998724699
Q gi|254780424|r 29 SQEKLGECLGITFQ 42 (144)
Q Consensus 29 TQ~eLA~~lGvs~s 42 (144)
||.++|..+|+|+.
T Consensus 166 t~~~iA~~lg~sr~ 179 (213)
T 1o5l_A 166 TLEELSRLFGCARP 179 (213)
T ss_dssp --------------
T ss_pred CHHHHHHHHCCCHH
T ss_conf 89999999798999
No 267
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=54.34 E-value=2.9 Score=20.52 Aligned_cols=28 Identities=7% Similarity=-0.133 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9799999987246999999852898835
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEKGVNRVG 55 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~G~~~ps 55 (144)
+...|+++.+|+|+++|.++.+....|.
T Consensus 11 lr~keV~~~~glsrstiy~~i~~G~FP~ 38 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKSGDLPK 38 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHCCCCCC
T ss_conf 6499999998979999999998799999
No 268
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=54.27 E-value=6.1 Score=18.43 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=26.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 199799999987246999999852898835899999
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~ 61 (144)
.+.|-.++|+..|||++++.+|=.++...=...+..
T Consensus 36 ~~~si~~IA~~agvs~~tlY~~F~sK~~L~~a~~~~ 71 (208)
T 3cwr_A 36 AAMTMEGVASEAGIAKKTLYRFASGRADLIGLLVES 71 (208)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 507799999994899664035899999999999999
No 269
>1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: a.4.1.9 a.121.1.1 PDB: 3g1m_A* 1u9n_A* 1u9o_A*
Probab=54.19 E-value=10 Score=16.95 Aligned_cols=45 Identities=16% Similarity=0.159 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 199799999987246999999852898835899999997549999
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~ 70 (144)
.+.|..++|+.+|||++++.+|=.++...=...+.....-+.-.+
T Consensus 43 ~~~ti~~IA~~agvs~~tlY~yF~sK~~L~~~~~~~~~~~~~~~~ 87 (216)
T 1t56_A 43 ADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMAL 87 (216)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 407899999883999999957639878999999999999999999
No 270
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=54.10 E-value=2.5 Score=20.90 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=6.4
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999754999
Q gi|254780424|r 58 RLQHISEVLESP 69 (144)
Q Consensus 58 ~L~~iA~~l~v~ 69 (144)
+...||..++++
T Consensus 53 t~~~la~~l~~~ 64 (142)
T 2bv6_A 53 NVKKVVTELALD 64 (142)
T ss_dssp EHHHHHHHTTCC
T ss_pred CHHHHHHHHCCC
T ss_conf 999999998979
No 271
>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=54.09 E-value=2 Score=21.49 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHH---HHHHCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99999872469999---9985289883589999999754999
Q gi|254780424|r 31 EKLGECLGITFQQV---QKYEKGVNRVGASRLQHISEVLESP 69 (144)
Q Consensus 31 ~eLA~~lGvs~s~i---s~~E~G~~~ps~~~L~~iA~~l~v~ 69 (144)
..+.+..|+|.+++ ..+.. .|..-+...||+.++++
T Consensus 37 ~~l~~~~glt~~q~~vL~~L~~---~~~~~t~~~La~~~~v~ 75 (160)
T 3boq_A 37 RQLLDETGLSLAKFDAMAQLAR---NPDGLSMGKLSGALKVT 75 (160)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHH---CTTCEEHHHHHHHCSSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHH---CCCCCCHHHHHHHHCCC
T ss_conf 9998881929999999999986---89999899999998968
No 272
>3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP}
Probab=54.02 E-value=5.6 Score=18.66 Aligned_cols=47 Identities=4% Similarity=0.060 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 19979999998724699999985289883589999999754999999
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~ 72 (144)
.++|-.++|+.+|||++++.+|=.++...=...+.....-+.-.+..
T Consensus 41 ~~~t~~~IA~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~ 87 (207)
T 3bjb_A 41 ARVQMHEVAKRAGVAIGTLYRYFPSKTHLFVAVMVDQIDRMGVGFKK 87 (207)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHTTCC-----
T ss_pred CCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 52779999999890998861318999999999999999988899998
No 273
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=53.84 E-value=9.4 Score=17.21 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=20.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999981997999999872469999998
Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
-|+..=..-| +..+.|+.+|||++++.+-
T Consensus 25 ~I~~aL~~~g-~~~~aA~~Lgisr~tL~rK 53 (61)
T 1g2h_A 25 VLKLFYAEYP-STRKLAQRLGVSHTAIANK 53 (61)
T ss_dssp HHHHHHHHSC-SHHHHHHHTTSCTHHHHHH
T ss_pred HHHHHHHHCC-CHHHHHHHHCCCHHHHHHH
T ss_conf 9999999968-9999999979789999999
No 274
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=53.37 E-value=4.9 Score=19.01 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=31.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 999999981997999999872469999998528988358999999
Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 (144)
Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~i 62 (144)
++=.-+--.++|-.++|+..|||++++.+|=.++...=...+...
T Consensus 41 ~lf~~~G~~~~T~~~IA~~aGvs~~tlY~~F~~K~~Ll~a~~~~~ 85 (226)
T 2pz9_A 41 EEFARHGIAGARVDRIAKQARTSKERVYAYFRSKEALYAHVAERE 85 (226)
T ss_dssp HHHHHHHHHHCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999985924188999999969387579788599999999999999
No 275
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=53.07 E-value=8 Score=17.68 Aligned_cols=29 Identities=7% Similarity=-0.048 Sum_probs=18.0
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999998199799999987246999999
Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~ 46 (144)
.|+..=..-|..+.+.|+.+|++++|+.+
T Consensus 55 lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~ 83 (91)
T 1ntc_A 55 LLTTALRHTQGHKQEAARLLGWGAATLTA 83 (91)
T ss_dssp HHHHHHHHTTTCTTHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHH
T ss_conf 99999999689599999997989999999
No 276
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=53.05 E-value=4.6 Score=19.20 Aligned_cols=36 Identities=11% Similarity=0.244 Sum_probs=27.0
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 819979999998724699999985289883589999
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~ 60 (144)
-.++|-+++|+.+|||++++.+|=.++...=...+.
T Consensus 34 ~~~~t~~~IA~~aGvs~~~lY~~F~sK~~L~~al~~ 69 (216)
T 2oi8_A 34 ASALSLNAIAKRMGMSGPALYRYFDGRDELITELIR 69 (216)
T ss_dssp TTSCCHHHHHHHTTCCHHHHHTTCSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH
T ss_conf 653889999999797988999887999999999999
No 277
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional repressor; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=53.03 E-value=6.5 Score=18.23 Aligned_cols=37 Identities=8% Similarity=0.002 Sum_probs=28.1
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 8199799999987246999999852898835899999
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~ 61 (144)
--+.|-.++|+++|||++++.+|=.+|...=...+..
T Consensus 24 ~~~~T~~~IA~~aGVs~~~lY~hF~sK~~L~~av~~~ 60 (234)
T 2opt_A 24 LDALSMRRLAQELKTGHASLYAHVGNRDELLDLVFDI 60 (234)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf 4427899999997858889999879889999999999
No 278
>2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2tct_A* 2trt_A* 1qpi_A* 1a6i_A 2vkv_A* 3fk7_A* 3fk6_A* 2ns7_A 2ns8_A
Probab=52.83 E-value=6.6 Score=18.19 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=29.1
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 81997999999872469999998528988358999999
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~i 62 (144)
-.|.|-.++|+..|||++++.+|=.++...=...+..+
T Consensus 21 ~~~~tv~~IA~~aGvs~~tlY~hF~sKe~L~~a~~~~~ 58 (207)
T 2vke_A 21 IDGLTTRKLAQKLGIEQPTLYWHVKNKRALLDALAVEI 58 (207)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 14178999999979197699887899899999999999
No 279
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=52.56 E-value=4.3 Score=19.42 Aligned_cols=47 Identities=6% Similarity=0.129 Sum_probs=33.1
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99999981997999999872469999998528988358999999975
Q gi|254780424|r 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 (144)
Q Consensus 19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144)
+=.-+---++|-.++|+++|||++++.+|=.++...-...+......
T Consensus 14 l~~~~G~~~~T~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~ 60 (209)
T 3bqy_A 14 LLNESGLDTLTMRRLAQAMDVQAGALYRYFAAKQDLLTAMAEHMVDG 60 (209)
T ss_dssp HHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHTTT
T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99972945167999999979488799988799899999999988888
No 280
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor A3}
Probab=52.18 E-value=6.2 Score=18.36 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99899999999999999--8199799999987246999999852898835
Q gi|254780424|r 8 PNPVDINVGKRIRLRRM--ILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 (144)
Q Consensus 8 ~~~~d~~iG~rIr~~R~--~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps 55 (144)
|+.-+.-+---++-+.. -.+.|-.++|+..|||++++.+|=.++...-
T Consensus 6 ~~tr~~Il~AA~~l~~~~G~~~~tl~~IA~~agvs~~t~Y~~F~sKe~L~ 55 (195)
T 2dg7_A 6 PGAEQRLKRAALELYSEHGYDNVTVTDIAERAGLTRRSYFRYFPDKREVL 55 (195)
T ss_dssp TTHHHHHHHHHHHHHHHSCGGGCCHHHHHHHTTCCHHHHHHHCSSTTGGG
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHH
T ss_conf 46999999999999998590406699999997909889977779999999
No 281
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=52.07 E-value=7 Score=18.03 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 19979999998724699999985289883
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRV 54 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~p 54 (144)
.++|-.++|++.|||++++.+|=.++...
T Consensus 58 ~~~T~~~Ia~~AGvs~~t~Y~~F~~K~~L 86 (214)
T 2guh_A 58 REITLKDIAEDAGVSAPLIIKYFGSKEQL 86 (214)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHSSHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf 40779999999791987999987889999
No 282
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=52.00 E-value=5.9 Score=18.53 Aligned_cols=48 Identities=8% Similarity=-0.006 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 199799999987246999999852898835899999997549999995
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
.|.|-.++|++.|||++++.+|=.++...=...+......+.-.+...
T Consensus 33 ~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~ 80 (204)
T 2ibd_A 33 RATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDDLFGKYREI 80 (204)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 407799999986889265999829999999999999999999999987
No 283
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=51.75 E-value=6.7 Score=18.17 Aligned_cols=44 Identities=7% Similarity=-0.050 Sum_probs=30.9
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 99981997999999872469999998528988358999999975
Q gi|254780424|r 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 (144)
Q Consensus 22 ~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144)
-+--.+.|..++|+..|||++++.+|=.++...=...+....+.
T Consensus 22 ~~G~~~~t~~~Ia~~agvs~~t~y~~F~sK~~L~~~~~~~~~~~ 65 (197)
T 2gen_A 22 EHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQ 65 (197)
T ss_dssp HHCTTTCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred HHCCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 75925177999999858392113450798789999999999999
No 284
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=51.73 E-value=8.6 Score=17.45 Aligned_cols=26 Identities=15% Similarity=0.011 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 19979999998724699999985289
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGV 51 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~ 51 (144)
..+|.++||+.+|+|.+++++.=+-.
T Consensus 18 ~~l~l~~lA~~~~~s~~~l~r~fk~~ 43 (103)
T 3lsg_A 18 SQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 99899999999892999999999998
No 285
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=51.73 E-value=6.8 Score=18.13 Aligned_cols=24 Identities=17% Similarity=-0.026 Sum_probs=21.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 819979999998724699999985
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYE 48 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E 48 (144)
..++|..|+|+.+|+++++++++-
T Consensus 36 ~~~~~l~eia~~lgl~~sT~~RlL 59 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLV 59 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 999899999999791999999999
No 286
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=51.69 E-value=11 Score=16.70 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHH-----HHHHHHHHH
Q ss_conf 999999999999998199-7999999872-----469999998
Q gi|254780424|r 11 VDINVGKRIRLRRMILGM-SQEKLGECLG-----ITFQQVQKY 47 (144)
Q Consensus 11 ~d~~iG~rIr~~R~~~gl-TQ~eLA~~lG-----vs~s~is~~ 47 (144)
..+| +.|+++=....+ ||+||.+.|. |+++|||+-
T Consensus 19 ~~Rq--~~I~~lI~~~~I~tQeeL~~~L~~~Gi~vTQATiSRD 59 (170)
T 3lap_A 19 AGRQ--ARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRD 59 (170)
T ss_dssp HHHH--HHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHH--HHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHH
T ss_conf 9999--9999999858978999999999975985418998988
No 287
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=51.53 E-value=5.6 Score=18.64 Aligned_cols=39 Identities=10% Similarity=0.082 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 199799999987246999999852898835899999997
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144)
.+.|-.++|+++|||++++.+|=.++...=...+.....
T Consensus 30 ~~~ti~~Ia~~agvs~~t~Y~yF~sK~~Ll~~~~~~~~~ 68 (203)
T 3b81_A 30 ENTTLAFIINKLGISKGALYHYFSSKEECADAAIENRVA 68 (203)
T ss_dssp TTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 417799999997909999976469999999999999999
No 288
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3}
Probab=51.32 E-value=7.7 Score=17.76 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=23.7
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 81997999999872469999998528988
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNR 53 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ 53 (144)
--|+|-.++|+++|||++++.+|=.++..
T Consensus 47 ~~~~t~~~IA~~aGVs~~tlY~yF~sKe~ 75 (241)
T 2hxi_A 47 AETFSVRKLAASLGTDSSSLYRHFRNKTE 75 (241)
T ss_dssp CCCCCHHHHHHHTTSCHHHHHHHTSSHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHH
T ss_conf 13053999999979088899998799999
No 289
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=51.19 E-value=1.3 Score=22.64 Aligned_cols=21 Identities=10% Similarity=0.265 Sum_probs=9.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 9872899999999999999999
Q gi|254780424|r 106 YFIQIDDVKVRQKIIELVRSIV 127 (144)
Q Consensus 106 ~~~~l~~~~~r~~i~~l~~~l~ 127 (144)
.+..+++.+ ++.+..+++.+.
T Consensus 154 l~~~l~~ee-~~~l~~~L~kl~ 174 (181)
T 2fbk_A 154 VLAPLSAQE-QRTLEELAGRML 174 (181)
T ss_dssp HHTTSCTTH-HHHHHHHHHHHH
T ss_pred HHHCCCHHH-HHHHHHHHHHHH
T ss_conf 993799999-999999999999
No 290
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=50.91 E-value=6.3 Score=18.33 Aligned_cols=40 Identities=8% Similarity=0.068 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 1997999999872469999998528988358999999975
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144)
.+.|-.++|+++|||++++.+|=.++...=...+..+...
T Consensus 36 ~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~~~~~~~~~~ 75 (218)
T 3gzi_A 36 AQVSIREIASLAGTDPGLIRYYFGSKEKLFSTMIHETAMP 75 (218)
T ss_dssp SCCCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 4164999999879197688874588999999999999999
No 291
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii atcc 33406}
Probab=50.91 E-value=5.2 Score=18.87 Aligned_cols=49 Identities=6% Similarity=0.069 Sum_probs=33.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 1997999999872469999998528988358999999975499999950
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~ 74 (144)
.+.|-.++|+.+|||++++.+|=.++...=...+....+.+.-.+...+
T Consensus 30 ~~~s~~~IA~~aGvs~~tlY~yF~sK~~L~~a~~~~~~~~~~~~~~~~~ 78 (216)
T 3f0c_A 30 CKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKIL 78 (216)
T ss_dssp SSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3078999999859885279875799999999989989999999999998
No 292
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=50.84 E-value=7 Score=18.02 Aligned_cols=34 Identities=9% Similarity=0.158 Sum_probs=26.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 1997999999872469999998528988358999
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L 59 (144)
.++|-.++|+.+|||++++.+|=.++...=...+
T Consensus 42 ~~~t~~~IA~~agvs~~tlY~~F~sK~~Ll~~~~ 75 (214)
T 2zb9_A 42 AQLTFERVARVSGVSKTTLYKWWPSKGALALDGY 75 (214)
T ss_dssp GGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 5087999999979298887450899999999999
No 293
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=50.54 E-value=4.1 Score=19.55 Aligned_cols=41 Identities=7% Similarity=0.062 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 19979999998724699999985289883589999999754
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
.++|-.++|+++|||++++.+|=.++...=...+......+
T Consensus 54 ~~~T~~~IA~~aGvs~~tiY~yF~sKe~Ll~~v~~~~~~~~ 94 (221)
T 3g7r_A 54 HSVGIDRITAEAQVTRATLYRHFSGKDDLILAYLDQADRGI 94 (221)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 40879999999891998999883769999999999999999
No 294
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=50.43 E-value=7.6 Score=17.80 Aligned_cols=31 Identities=6% Similarity=0.017 Sum_probs=25.5
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8199799999987246999999852898835
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps 55 (144)
-.+.|..++|+..|||++++.+|=.++...=
T Consensus 23 ~~~~t~~~Ia~~agvs~~tlY~~F~sKe~L~ 53 (228)
T 3nnr_A 23 ERNITTNHIAAHLAISPGNLYYHFRNKSDII 53 (228)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHH
T ss_conf 3527799999988909989998878999999
No 295
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulator, transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=50.34 E-value=8.1 Score=17.64 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=13.4
Q ss_pred CCCHHHHHHHHHHH-HHHHHH
Q ss_conf 99799999987246-999999
Q gi|254780424|r 27 GMSQEKLGECLGIT-FQQVQK 46 (144)
Q Consensus 27 glTQ~eLA~~lGvs-~s~is~ 46 (144)
.+||.++|+.+|+| +.++++
T Consensus 169 ~~t~~~lA~~lg~s~r~~vsR 189 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSR 189 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHH
T ss_pred CCCHHHHHHHHCCCCHHHHHH
T ss_conf 767999999968981889999
No 296
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=50.30 E-value=12 Score=16.56 Aligned_cols=43 Identities=12% Similarity=0.001 Sum_probs=31.0
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 9819979999998724699999985289883589999999754
Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
--.|.|-.++|+.+|||++++.+|=.++...=...+.....-+
T Consensus 29 G~~~~ti~~Ia~~agvs~~t~Y~yF~sKe~L~~a~~~~~~~~~ 71 (197)
T 2hyt_A 29 GYADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVVEQIDAEM 71 (197)
T ss_dssp CTTTCCHHHHHHHHTCCTTHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 9151879999998385924065508999999999999999998
No 297
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281, TETR transcriptional regulator, PSI-2; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=50.28 E-value=8.8 Score=17.39 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 19979999998724699999985289883589999
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~ 60 (144)
.+.|-.++|+.+|||++++.+|=.++...=...+.
T Consensus 62 ~~~ti~~IA~~aGvS~~tlY~yF~sKe~L~~a~~~ 96 (229)
T 3bni_A 62 DALSTRAVALRADVPIGSVYRFFGNKRQMADALAQ 96 (229)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH
T ss_conf 10679999999596999999986999999999999
No 298
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=50.28 E-value=7.1 Score=17.99 Aligned_cols=47 Identities=13% Similarity=-0.038 Sum_probs=32.4
Q ss_pred HHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9999999--8199799999987246999999852898835899999997
Q gi|254780424|r 18 RIRLRRM--ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 (144)
Q Consensus 18 rIr~~R~--~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144)
-++-+.+ -.|+|-.++|+++|||++++.+|=.++...=...+.....
T Consensus 17 a~~l~~~~G~~~~s~~~IA~~agvs~~~~Y~~F~sK~~L~~~~~~~~~~ 65 (194)
T 3dpj_A 17 ADELFYRQGFAQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIRLRLA 65 (194)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9999997492518899999986829126888759999999999999999
No 299
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=50.23 E-value=9 Score=17.34 Aligned_cols=28 Identities=14% Similarity=0.131 Sum_probs=23.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8199799999987246999999852898
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVN 52 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~ 52 (144)
-.|.|-.++|+.+|||++++..|=.++.
T Consensus 66 ~~~vS~~~IA~~AGVS~~t~Y~~F~sK~ 93 (260)
T 2of7_A 66 YEATTVEQIAERAEVSPSTVLRYFPTRE 93 (260)
T ss_dssp STTCCHHHHHHHHTSCHHHHHHHCSSHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHH
T ss_conf 4528799999996967979999859999
No 300
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=50.21 E-value=12 Score=16.55 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=32.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCC------C-CHHHHHHHHHHHHHHHHH
Q ss_conf 766899899999999999999819------9-799999987246999999
Q gi|254780424|r 4 NKKIPNPVDINVGKRIRLRRMILG------M-SQEKLGECLGITFQQVQK 46 (144)
Q Consensus 4 ~~~~~~~~d~~iG~rIr~~R~~~g------l-TQ~eLA~~lGvs~s~is~ 46 (144)
+++.|-|+=.-|-+.|++.=..-. | |..+||+..|||+.|+-+
T Consensus 4 ~~~~~~P~y~~i~~~i~~~I~~G~~~~G~~LPse~~La~~~~VSr~TVR~ 53 (243)
T 2wv0_A 4 NKQSPIPIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQ 53 (243)
T ss_dssp CTTSSSCHHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 89999888999999999999839999939993799999997969999999
No 301
>3obc_A Pyrophosphatase; dimeric four alpha-helical bundle, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PGE; 1.80A {Archaeoglobus fulgidus}
Probab=49.96 E-value=12 Score=16.52 Aligned_cols=25 Identities=16% Similarity=0.115 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHCCCCH----HHHHHHHH
Q ss_conf 99999999999819979----99999872
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQ----EKLGECLG 38 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ----~eLA~~lG 38 (144)
.+=++|+.++.++||.| +.||-.+.
T Consensus 15 el~~~i~~F~~~R~W~qfh~Pknlal~L~ 43 (118)
T 3obc_A 15 ELLDILREFRDSRGWLKYHTPKNLAVSIS 43 (118)
T ss_dssp HHHHHHHHHHHHTTCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 99999999999779731369999999999
No 302
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=49.93 E-value=9.1 Score=17.30 Aligned_cols=38 Identities=8% Similarity=-0.018 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 19979999998724699999985289883589999999
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA 63 (144)
-|.|-.++|+..|||++++.+|=.++...=...+....
T Consensus 26 ~~~t~~~IA~~aGvs~~~lY~yF~sK~~Ll~av~~~~~ 63 (235)
T 2fbq_A 26 AETSLRLITSKAGVNLAAVNYHFGSKKALIQAVFSRFL 63 (235)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 40779999999793988999985999999999999999
No 303
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* 1rpw_A* ...
Probab=49.93 E-value=9.3 Score=17.24 Aligned_cols=41 Identities=5% Similarity=-0.209 Sum_probs=29.3
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 98199799999987246999999852898835899999997
Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 (144)
Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144)
--.+.|-.++|+.+|||++++.+|=.++...=...+.....
T Consensus 19 G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~ 59 (194)
T 3bqz_B 19 GYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEES 59 (194)
T ss_dssp TTTTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 93306799999997909998814378999999999999899
No 304
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=49.57 E-value=6.5 Score=18.23 Aligned_cols=39 Identities=5% Similarity=0.186 Sum_probs=29.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 199799999987246999999852898835899999997
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144)
.+.|-.++|+.+|||++++.+|=.++...=...+.....
T Consensus 45 ~~~t~~~IA~~agvs~~tiY~yF~sK~~L~~~~~~~~~~ 83 (217)
T 3mvp_A 45 FNVTTNEIAKKADVSVGTLYAYFASKEDILTALLKRYND 83 (217)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 427899999988909889999889999999999999999
No 305
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiative, PSI, midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=49.54 E-value=4.5 Score=19.24 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=25.5
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
Q ss_conf 8199799999987246999999852898835899
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~ 58 (144)
--|+|-.++|+.+|||++++..|=.++...=...
T Consensus 37 ~~~~T~~~IA~~aGvs~~tlY~hF~sKe~L~~a~ 70 (243)
T 2g7l_A 37 LEKVTMRRLAQELDTGPASLYVYVANTAELHAAV 70 (243)
T ss_dssp SSSCCHHHHHHHTTSCHHHHTTTCCSHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCCHHCCCCHHHHHHHH
T ss_conf 4307899999986899553200390989999999
No 306
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=49.53 E-value=9.2 Score=17.27 Aligned_cols=38 Identities=5% Similarity=0.101 Sum_probs=28.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 19979999998724699999985289883589999999
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA 63 (144)
.|.|-+++|+..|||++++.+|=.++...=...+....
T Consensus 49 ~~~si~~IA~~agvs~~tiY~~F~sK~~L~~~~~~~~~ 86 (222)
T 3bru_A 49 SSVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYD 86 (222)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 40779999998689902698856989999999999999
No 307
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=49.37 E-value=6.5 Score=18.25 Aligned_cols=38 Identities=11% Similarity=-0.073 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 19979999998724699999985289883589999999
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA 63 (144)
.+.|-.++|+..|||++++.+|=.++...=...+..+.
T Consensus 31 ~~~t~~~Ia~~agvs~~tlY~~F~~Ke~L~~~~~~~~~ 68 (205)
T 1rkt_A 31 ELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGL 68 (205)
T ss_dssp TTCCHHHHHHHHTSCHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 51879999998689857411578999999999999999
No 308
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=49.30 E-value=12 Score=16.46 Aligned_cols=42 Identities=7% Similarity=0.033 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf 199799999987246999999852898835899999997549
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~ 67 (144)
.++|-.++|+.+|||++++.+|=.++...=...+......+.
T Consensus 43 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~~ 84 (214)
T 2oer_A 43 QRFTTARVAERAGVSIGSLYQYFPNKAAILFRLQSDEWRRTT 84 (214)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 517799999998909989998819999999999999999999
No 309
>3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=48.97 E-value=12 Score=16.43 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=28.5
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 8199799999987246999999852898835899999997
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144)
-.|.|-.++|+++|||++++.+|=.++...=...+....+
T Consensus 32 ~~~~t~~~IA~~agvs~~tiY~~F~~K~~L~~~~~~~~~~ 71 (199)
T 3crj_A 32 YADLTIQRIADEYGKSTAAVHYYYDTKDDLLAAFLDYLLE 71 (199)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 0407799999997919999988858999999999999999
No 310
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=48.77 E-value=11 Score=16.85 Aligned_cols=11 Identities=9% Similarity=-0.034 Sum_probs=3.6
Q ss_pred HHHHHHHHCCC
Q ss_conf 99999975499
Q gi|254780424|r 58 RLQHISEVLES 68 (144)
Q Consensus 58 ~L~~iA~~l~v 68 (144)
.++..+..+|+
T Consensus 102 ~~~~~~~~~g~ 112 (236)
T 2q0o_A 102 RFRDEAISHGI 112 (236)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
T ss_conf 99999997698
No 311
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=48.53 E-value=9.9 Score=17.08 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=35.9
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 999999819979999998724699999985289883589999999754999999
Q gi|254780424|r 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 (144)
Q Consensus 19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~ 72 (144)
++-+...-+.|-.++|+++|||++++.+|=.++...=...+......+.-.+..
T Consensus 24 ~~l~~~~G~~T~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~ 77 (190)
T 2v57_A 24 MLVLADHPTAALGDIAAAAGVGRSTVHRYYPERTDLLRALARHVHDLSNAAIER 77 (190)
T ss_dssp HHHHTTCTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999998699739999999890999997773899999999999999999999998
No 312
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.40A {Enterococcus faecalis V583} SCOP: a.4.1.9 a.121.1.1
Probab=48.36 E-value=6.4 Score=18.30 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=36.5
Q ss_pred HHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
Q ss_conf 99999999998---1997999999872469999998528988358999999975499
Q gi|254780424|r 15 VGKRIRLRRMI---LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 (144)
Q Consensus 15 iG~rIr~~R~~---~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v 68 (144)
|---++-+-+. .+.|-.++|+.+|||+++|.+|=.++...=...+..+...+..
T Consensus 11 l~aA~~lf~~~~G~~~~T~~~IA~~aGvs~~~lY~hF~sKe~L~~av~~~~~~~~~~ 67 (220)
T 1z0x_A 11 IAAAFSLLEKSPTLEQLSMRKVAKQLGVQAPAIYWYFKNKQALLQSMAEAIEEHFQE 67 (220)
T ss_dssp HHHHHHHHHHSCCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 999999998808953167999999969678789999699999999999999876336
No 313
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=48.17 E-value=7.3 Score=17.91 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=32.3
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 9819979999998724699999985289883589999999754
Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
--.+.|-.++|++.|||++++.+|=.++...=...+......+
T Consensus 32 G~~~~ti~~Ia~~agvs~~t~Y~~F~~Ke~L~~a~~~~~~~~~ 74 (221)
T 3c2b_A 32 GEKALTTSGLARAANCSKESLYKWFGDRDGLLAAMITFQQSKV 74 (221)
T ss_dssp CGGGCCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHTSS
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9130779999999794988999887999999999999999999
No 314
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=48.16 E-value=7.1 Score=18.00 Aligned_cols=40 Identities=5% Similarity=-0.048 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 1997999999872469999998528988358999999975
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144)
.+.|-.++|++.|||++++.+|=.++...-...+......
T Consensus 31 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~ 70 (198)
T 3cjd_A 31 ASLRARELARQADCAVGAIYTHFQDLNALTLEVNGRTFAR 70 (198)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 4057999999828893210230797788999999999999
No 315
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, structural genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=48.15 E-value=7.1 Score=18.00 Aligned_cols=41 Identities=24% Similarity=0.237 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 19979999998724699999985289883589999999754
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
.+.|-.++|+..|||++++.+|=.++...-...+......+
T Consensus 32 ~~~t~~~IA~~aGvs~~tlY~~F~sK~~Ll~a~~~~~~~~~ 72 (231)
T 2qib_A 32 DEVSIDEIASAAGISRPLVYHYFPGKLSLYEAALQRASDDL 72 (231)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 50779999999793988998884996899999999999999
No 316
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=48.04 E-value=11 Score=16.75 Aligned_cols=52 Identities=10% Similarity=-0.031 Sum_probs=35.5
Q ss_pred HHHHHHHHH-HHCC---CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 999999999-9819---979999998724699999985289883589999999754
Q gi|254780424|r 15 VGKRIRLRR-MILG---MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 15 iG~rIr~~R-~~~g---lTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
|-+-...+- .++| .|-.++|+.+|||++++..|=.++...=...+....+.+
T Consensus 24 i~~a~~~Lf~~~kG~~~~Sv~dIa~~AgVs~~t~Y~~F~sK~~L~~~v~~~~~~~~ 79 (185)
T 3o60_A 24 LYTVLERFYVEDRTFESISIKDLCEQARVSRATFYRHHKEIIQVIEVQILRTMQYF 79 (185)
T ss_dssp HHHHHHHHHHTTCCTTTCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999988089310879999998788866622346989999999999999999
No 317
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=48.00 E-value=7.4 Score=17.87 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=28.1
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 99819979999998724699999985289883589999
Q gi|254780424|r 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 (144)
Q Consensus 23 R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~ 60 (144)
+--.+.|-.++|++.|||++++.+|=.++...=...+.
T Consensus 19 ~G~~~~ti~~Ia~~agvs~~t~Y~yF~~K~~L~~~~~~ 56 (208)
T 2g3b_A 19 RGIRGLRVNDVAEVAGVSPGLLYYHFKDRIGLLEAALN 56 (208)
T ss_dssp HHHHHCCHHHHHHHHTSCHHHHHHHHCSHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH
T ss_conf 59150779999999792999998886999999999999
No 318
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=47.79 E-value=7.4 Score=17.87 Aligned_cols=37 Identities=14% Similarity=-0.055 Sum_probs=27.5
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9981997999999872469999998528988358999
Q gi|254780424|r 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 (144)
Q Consensus 23 R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L 59 (144)
+--.++|-.++|+.+|||++++.+|=.++...=...+
T Consensus 30 ~G~~~~s~~~Ia~~agvs~~tlY~~F~sK~~Ll~~~~ 66 (156)
T 3ljl_A 30 LGYDKMSYTTLSQQTGVSRTGISHHFPKKTDFTAALD 66 (156)
T ss_dssp THHHHCCHHHHHHHHTCCHHHHHHHCSSTHHHHHHHT
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 1903077999999869888699898779999999999
No 319
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=47.78 E-value=6.9 Score=18.06 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHCC--C-CHHHHHHHHHHHHHHHH
Q ss_conf 99999999999819--9-79999998724699999
Q gi|254780424|r 14 NVGKRIRLRRMILG--M-SQEKLGECLGITFQQVQ 45 (144)
Q Consensus 14 ~iG~rIr~~R~~~g--l-TQ~eLA~~lGvs~s~is 45 (144)
+|-+.|..-+..-| | |..+||+.+|||++.+-
T Consensus 12 ~i~~~I~~g~l~pG~~LpsE~eLa~~~gVSRt~VR 46 (239)
T 2di3_A 12 WVTEELRSGRLKIGDHLPSERALSETLGVSRSSLR 46 (239)
T ss_dssp HHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 99999982999980999019999999891989999
No 320
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genomics, PSI-2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=47.72 E-value=11 Score=16.88 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 1997999999872469999998528988358999999975
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144)
.+.|-.++|+..|||++++.+|=.++...-...+......
T Consensus 36 ~~~ti~~Ia~~agvs~~t~Y~~F~sKe~Ll~~~~~~~~~~ 75 (207)
T 2rae_A 36 DATSVDEVAEASGIARRTLFRYFPSKNAIPWGDFDAHLAE 75 (207)
T ss_dssp TTSCHHHHHHHTTSCHHHHHHHCSSTTTGGGCSHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 3067999999979198899888799999899999999999
No 321
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=47.70 E-value=13 Score=16.30 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=25.0
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
Q ss_conf 819979999998724699999985289883589
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~ 57 (144)
...+|.++||+.+|+|..++++.=+-....+..
T Consensus 16 ~~~~~~~~la~~~~~S~~~l~r~fk~~~g~s~~ 48 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRSRGYSPM 48 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHHTSSCHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHH
T ss_conf 899999999999891999999999999891968
No 322
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structure initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=47.66 E-value=6.4 Score=18.29 Aligned_cols=43 Identities=14% Similarity=0.054 Sum_probs=29.7
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 9999999981997999999872469999998528988358999
Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 (144)
Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L 59 (144)
--.+-+...-+.|-.++|+.+|||++++.+|=.+|...=...+
T Consensus 19 aA~~lf~e~G~~S~~~IA~~aGvs~~tlY~yF~sKe~L~~av~ 61 (213)
T 2g7g_A 19 AALELVDRDGDFRMPDLARHLNVQVSSIYHHAKGRAAVVELVR 61 (213)
T ss_dssp HHHHHHHHHSSCCHHHHHHHTTSCHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999829862999999969687789988799899999999
No 323
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=47.63 E-value=9.4 Score=17.21 Aligned_cols=26 Identities=8% Similarity=0.009 Sum_probs=22.2
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 81997999999872469999998528
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKG 50 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G 50 (144)
...+|.+++|+.+|+|..++++.=+.
T Consensus 21 ~~~~~l~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 21 AHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 89999999999989399999999998
No 324
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, TETR family, transcription; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=47.53 E-value=5.4 Score=18.75 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=31.5
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9998199799999987246999999852898835899999997
Q gi|254780424|r 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 (144)
Q Consensus 22 ~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144)
-+--.|.|-.++|+.+|||++++.+|=.++...-...+.....
T Consensus 22 ~~G~~~~ti~~IA~~agvs~~tiY~~F~sK~~L~~~~~~~~~~ 64 (186)
T 2jj7_A 22 ERGYEGTSIQEIAKEAKVNVAMASYYFNGKENLYYEVFKKYGL 64 (186)
T ss_dssp HHHHHHCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHHHHSC
T ss_pred HHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 8591417799999986969889977878978999999999999
No 325
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=46.71 E-value=6 Score=18.46 Aligned_cols=41 Identities=10% Similarity=0.138 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 19979999998724699999985289883589999999754
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
.+.|-.++|+.+|||++++.+|=.++...-...+......+
T Consensus 47 ~~~t~~~IA~~aGvs~~tlY~~F~sKe~L~~a~~~~~~~~~ 87 (217)
T 3hta_A 47 AGLSHRTVAAEADVPLGSTTYHFATLDDLMVAALRQANEGF 87 (217)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHTHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 40779999999488831487616999999999999999999
No 326
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP}
Probab=46.59 E-value=7.5 Score=17.84 Aligned_cols=35 Identities=6% Similarity=0.110 Sum_probs=25.6
Q ss_pred HHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999999----8199799999987246999999852
Q gi|254780424|r 15 VGKRIRLRRM----ILGMSQEKLGECLGITFQQVQKYEK 49 (144)
Q Consensus 15 iG~rIr~~R~----~~glTQ~eLA~~lGvs~s~is~~E~ 49 (144)
+.+-+.=++. ..++|..|+|+.+|+++++++++-+
T Consensus 20 l~Ral~ILe~la~~~~~lsl~eia~~l~l~kst~~RlL~ 58 (265)
T 2ia2_A 20 LARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLL 58 (265)
T ss_dssp HHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999997379997999999997949999999999
No 327
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV}
Probab=46.56 E-value=6.4 Score=18.26 Aligned_cols=29 Identities=17% Similarity=-0.025 Sum_probs=22.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999819979999998724699999985
Q gi|254780424|r 19 IRLRRMILGMSQEKLGECLGITFQQVQKYE 48 (144)
Q Consensus 19 Ir~~R~~~glTQ~eLA~~lGvs~s~is~~E 48 (144)
++.++ ...+|..+|++.+|+|++++|+.-
T Consensus 27 l~~L~-~~~~~v~ela~~lgis~stvS~HL 55 (118)
T 2jsc_A 27 LVALL-DGVCYPGQLAAHLGLTRSNVSNHL 55 (118)
T ss_dssp HHHHH-TTCCSTTTHHHHHSSCHHHHHHHH
T ss_pred HHHHH-CCCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 99998-199289999999892999999999
No 328
>2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444}
Probab=46.54 E-value=6.1 Score=18.42 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=23.8
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 819979999998724699999985289883
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~p 54 (144)
-.+.|-.++|+++|||++++.+|=.++...
T Consensus 29 ~~~~s~~~IA~~agvs~~t~Y~~F~sKe~L 58 (212)
T 2ras_A 29 GAGLTLSELAARAGISQANLSRYFETREDL 58 (212)
T ss_dssp SSCCCHHHHHHHHTSCHHHHTTTCSSHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 140779999998388945441129799999
No 329
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5
Probab=46.34 E-value=14 Score=16.17 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=18.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 81997999999872469999998
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
..+.|-.+||+.+|+|+++++.-
T Consensus 41 ~~~~~~~eLa~~lg~s~stvs~H 63 (96)
T 1y0u_A 41 DKGRSEEEIMQTLSLSKKQLDYH 63 (96)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 57997999999989199899999
No 330
>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=46.27 E-value=10 Score=16.96 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=10.6
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 99799999987246999999
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQK 46 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~ 46 (144)
.++-.++|+.+|+|++++|+
T Consensus 56 ~~~v~ela~~l~~s~s~vS~ 75 (122)
T 1u2w_A 56 ELCVCDIANILGVTIANASH 75 (122)
T ss_dssp CEEHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHH
T ss_conf 92799999998887326999
No 331
>3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=46.24 E-value=14 Score=16.16 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=26.0
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 81997999999872469999998528988358999
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L 59 (144)
-.+.|-.++|+..|||++++.+|=.++...=.+.+
T Consensus 29 ~~~~si~~Ia~~agvs~~tiY~~F~sK~~L~~~~~ 63 (196)
T 3he0_A 29 FQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVR 63 (196)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 56377999999868997754021899999999999
No 332
>3jsj_A Putative TETR-family transcriptional regulator; NP_821317.1, putative transcriptional regulator, structural genomics; 2.10A {Streptomyces avermitilis ma-4680}
Probab=46.13 E-value=14 Score=16.15 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=39.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 987668998999999999999998-199799999987246999999852898835899999997
Q gi|254780424|r 2 VGNKKIPNPVDINVGKRIRLRRMI-LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 (144)
Q Consensus 2 ~~~~~~~~~~d~~iG~rIr~~R~~-~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144)
|....++...+.-|---.+-+... -+.|-.++|+..|||++++.+|=.++...=...+.....
T Consensus 2 m~~~~~~~~R~~il~aa~~l~~~~G~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~ 65 (190)
T 3jsj_A 2 MTTEVKQSPRERLLEAAAALTYRDGVGIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSA 65 (190)
T ss_dssp -----CCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 9887663099999999999999769788799999997909999967749999999999999999
No 333
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=45.79 E-value=6.2 Score=18.36 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 199799999987246999999852898835899999997
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144)
.+.|-+++|+.+|||++++.+|=.++...=.+.+..+..
T Consensus 30 ~~~s~~~Ia~~agvs~~tiY~~F~~K~~L~~a~~~~~~~ 68 (210)
T 2xdn_A 30 ARTTLADIAELAGVTRGAIYWHFNNKAELVQALLDSLAE 68 (210)
T ss_dssp TTCCHHHHHHHHTCCTTHHHHHCSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 407799999997929889988869999999988999999
No 334
>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=45.70 E-value=6.2 Score=18.38 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=31.5
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 9819979999998724699999985289883589999999754
Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
--.+.|-.++|+..|||++++.+|=.++...=...+......+
T Consensus 26 G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~v~~~~~~~~ 68 (209)
T 2gfn_A 26 GISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQ 68 (209)
T ss_dssp CGGGCCHHHHHHHHSSCHHHHHHHTSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9130769999999790999997434899999999999999999
No 335
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=44.67 E-value=10 Score=16.94 Aligned_cols=30 Identities=33% Similarity=0.248 Sum_probs=21.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999981997999999872469999998
Q gi|254780424|r 18 RIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
-|+-+..-.=+|=++||+.+|||+.+|++.
T Consensus 10 ll~~L~~g~~~SGe~la~~L~iSR~aVwk~ 39 (321)
T 1bia_A 10 LIALLANGEFHSGEQLGETLGMSRAAINKH 39 (321)
T ss_dssp HHHHHTTSSCBCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 999972699597999999879799999999
No 336
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=44.62 E-value=5.9 Score=18.53 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=30.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 819979999998724699999985289883589999999754
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
-.+.|-.++|+..|||++++.+|=.++...=...+..+...+
T Consensus 30 ~~~~t~~~IA~~aGvs~~~ly~~F~sK~~L~~a~~~~~~~~~ 71 (200)
T 2hyj_A 30 LDGITIGRLAEELEMSKSGVHKHFGTKETLQISTLDKAFVDF 71 (200)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 151889999998781978895544899999999999999999
No 337
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal domain, homeodomain-like; 1.55A {Aquifex aeolicus VF5}
Probab=44.30 E-value=10 Score=17.03 Aligned_cols=41 Identities=10% Similarity=-0.010 Sum_probs=30.2
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 81997999999872469999998528988358999999975
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144)
-.+.|-.++|+.+|||++++.+|=.++...-...+......
T Consensus 20 ~~~~t~~~Ia~~agvs~~tiY~~F~~K~~L~~a~~~~~~~~ 60 (179)
T 2eh3_A 20 YQGTSVEEIVKRANLSKGAFYFHFKSKEELITEIIERTHKK 60 (179)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 25076999999878496521442899999999999999999
No 338
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=44.29 E-value=9 Score=17.33 Aligned_cols=41 Identities=7% Similarity=0.056 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf 99799999987246999999852898835899999997549
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~ 67 (144)
+.|-.++|+.+|||++++.+|=.++...-...+......+.
T Consensus 32 ~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~av~~~~~~~~~ 72 (196)
T 2qwt_A 32 GVPMDEIARRAGVGAGTVYRHFPTKQALVVAVAEDRVRRIV 72 (196)
T ss_dssp TSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 88899999996949999987848999999999999999999
No 339
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=44.13 E-value=10 Score=17.01 Aligned_cols=40 Identities=10% Similarity=-0.029 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 1997999999872469999998528988358999999975
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144)
.+.|-.++|+.+|||++++.+|=.++...=...+......
T Consensus 33 ~~~si~~Ia~~agvs~~t~Y~~F~sK~~L~~~v~~~~~~~ 72 (220)
T 3lhq_A 33 SATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWELSESN 72 (220)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 4065999999979398899988699999999999999999
No 340
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, cytoplasm, binding, transcription; HET: PAM; 1.90A {Vibrio cholerae O395}
Probab=43.95 E-value=13 Score=16.31 Aligned_cols=31 Identities=10% Similarity=-0.106 Sum_probs=23.5
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 81997999999872469999998528988358
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~ 56 (144)
...+|.+++|+.+|+|.+++++.=+- ...+.
T Consensus 183 ~~~~~l~~lA~~~~~S~~~l~r~fK~-~g~s~ 213 (276)
T 3gbg_A 183 TRNWRWADICGELRTNRMILKKELES-RGVKF 213 (276)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHT-TTCCH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH-HCCCH
T ss_conf 79999999999979899999999999-69889
No 341
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1}
Probab=43.78 E-value=11 Score=16.89 Aligned_cols=32 Identities=19% Similarity=0.072 Sum_probs=20.1
Q ss_pred HHHHHHHHHHH----CC--C-CHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998----19--9-799999987246999999
Q gi|254780424|r 15 VGKRIRLRRMI----LG--M-SQEKLGECLGITFQQVQK 46 (144)
Q Consensus 15 iG~rIr~~R~~----~g--l-TQ~eLA~~lGvs~s~is~ 46 (144)
|-..|+..=.. -| | |..+||+.+|||++++.+
T Consensus 16 i~~~i~~~I~~g~l~~G~~LPser~La~~~~vSr~tVr~ 54 (126)
T 3by6_A 16 LVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAK 54 (126)
T ss_dssp HHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999999859999929990499999997989899999
No 342
>2dg8_A Putative TETR-family transcriptional regulatory protein; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor A3}
Probab=43.68 E-value=7.2 Score=17.94 Aligned_cols=42 Identities=10% Similarity=0.256 Sum_probs=30.9
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 819979999998724699999985289883589999999754
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
-.++|-.++|+.+|||++++.+|=.++...=...+......+
T Consensus 27 ~~~~si~~Ia~~agvs~~t~Y~~F~sKe~Ll~~v~~~~~~~~ 68 (193)
T 2dg8_A 27 IARVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAFGRFTDHI 68 (193)
T ss_dssp GGGCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 040769999999890999998780899999999999999999
No 343
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=43.62 E-value=7.4 Score=17.89 Aligned_cols=38 Identities=0% Similarity=-0.149 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 19979999998724699999985289883589999999
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA 63 (144)
.+.|-.++|+.+|||++++.+|=.++...-...+..+.
T Consensus 31 ~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~ 68 (177)
T 3kkc_A 31 SKITVQDVIGLANVGRSTFYSHYESKEVLLKELCEDLF 68 (177)
T ss_dssp TTCCHHHHHHHHCCCHHHHTTTCSSTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 40769999999797877743658988999999999989
No 344
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=43.13 E-value=3.1 Score=20.31 Aligned_cols=27 Identities=19% Similarity=0.070 Sum_probs=21.1
Q ss_pred HCCCCHHHHHHHH------HHHHHHHHHHHCCC
Q ss_conf 8199799999987------24699999985289
Q gi|254780424|r 25 ILGMSQEKLGECL------GITFQQVQKYEKGV 51 (144)
Q Consensus 25 ~~glTQ~eLA~~l------Gvs~s~is~~E~G~ 51 (144)
.-+++|.+||+-. .|++||||.|.+.+
T Consensus 28 ~~~~~Q~~la~wf~~~fg~~Is~STvs~ILk~k 60 (144)
T 1iuf_A 28 QNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 998779999999999987998698999999789
No 345
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=43.10 E-value=15 Score=15.85 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 1997999999872469999998528988358999999975499999950
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~ 74 (144)
.+.|-.++|+..|||++++.+|=.++...=...+..+...+.-.+....
T Consensus 50 ~~~ti~~Ia~~agvs~~t~Y~~F~sKe~L~~a~~~~~~~~~~~~~~~~~ 98 (218)
T 3dcf_A 50 YATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIA 98 (218)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5178999999819893410241497069999999999888899999887
No 346
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein structure initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=42.97 E-value=5 Score=18.98 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=28.0
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 81997999999872469999998528988358999999
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~i 62 (144)
-.+.|-.++|+..|||++++.+|=.++...=...+...
T Consensus 29 ~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~a~~~~~ 66 (202)
T 2i10_A 29 YEGTSITDLTKALGINPPSLYAAFGSKRDLFEKTLDRY 66 (202)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 14076999999979099999776189999999999998
No 347
>3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406}
Probab=42.80 E-value=15 Score=15.82 Aligned_cols=59 Identities=12% Similarity=0.005 Sum_probs=38.0
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 99999999981997999999872469999998528988358999999975499999950
Q gi|254780424|r 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 (144)
Q Consensus 16 G~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~ 74 (144)
+.++=.-+--.|.|-.++|+.+|||++++.+|=.++...=.+.+......+.-.+...+
T Consensus 20 a~~lf~~~G~~~~t~~~Ia~~agvs~~~iY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~ 78 (204)
T 3eup_A 20 TAPVFNVKGLAGTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKV 78 (204)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999973946288999999979099999776456479999999999999999999987
No 348
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=42.75 E-value=11 Score=16.85 Aligned_cols=23 Identities=0% Similarity=-0.126 Sum_probs=17.2
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+.+....||..+|++....
T Consensus 21 n~~Ps~~~~~~LA~~lgls~~~V 43 (60)
T 3a02_A 21 THYPDVFTREELAMKIGLTEARI 43 (60)
T ss_dssp CSSCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 69979999999999919899993
No 349
>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis}
Probab=42.68 E-value=16 Score=15.81 Aligned_cols=19 Identities=11% Similarity=0.305 Sum_probs=7.1
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q ss_conf 1997999999872469999
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQV 44 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~i 44 (144)
.|+|-++.|+.+|+|..|+
T Consensus 163 ~G~snkeIA~~L~iS~~TV 181 (225)
T 3c3w_A 163 EGLTNKQIADRMFLAEKTV 181 (225)
T ss_dssp TTCCHHHHHHHHTCCHHHH
T ss_pred HCCCHHHHHHHHCCCHHHH
T ss_conf 3898889999978879999
No 350
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=42.57 E-value=16 Score=15.80 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=24.0
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8199799999987246999999852898835
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps 55 (144)
...+|.+++|+.+|+|.+++++.=+-....+
T Consensus 19 ~~~~sl~~la~~~~~s~~~l~r~fk~~~g~s 49 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQKEMGEH 49 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHSSC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 8999999999998929999999999998978
No 351
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=42.49 E-value=16 Score=15.79 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=24.9
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 819979999998724699999985289883589999
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~ 60 (144)
..|=.=+.||..+|++...|..++... .|+...|.
T Consensus 16 ~~g~dW~~LA~~Lgl~~~~I~~i~~~~-~~~~~mL~ 50 (91)
T 2ib1_A 16 EPAKGWQELAGHLGYQAEAVETMACDQ-MPAYTLLR 50 (91)
T ss_dssp CCSSTHHHHHHHHTCCHHHHHHHTTSS-CHHHHHHH
T ss_pred CCCCCHHHHHHHCCCCHHHHHHHHHCC-CHHHHHHH
T ss_conf 864569999989293999999999736-68999999
No 352
>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A
Probab=42.41 E-value=16 Score=15.79 Aligned_cols=31 Identities=13% Similarity=0.076 Sum_probs=22.9
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999981997999999872469999998
Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
+.++.+..-.++|-.+||..+|+++..|++.
T Consensus 17 ~~L~~~g~g~~~tA~~LAk~lg~~Kk~vN~~ 47 (81)
T 1qbj_A 17 KFLEELGEGKATTAHDLSGKLGTPKKEINRV 47 (81)
T ss_dssp HHHHHHCTTCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 9999737997521999999969888898999
No 353
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=42.33 E-value=13 Score=16.42 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 1997999999872469999998528988358999999975
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144)
.+.|-.++|+..|||++++.+|=.++...=.+.+..+...
T Consensus 59 ~~~T~~~IA~~AgvS~~tlY~yF~sKe~Ll~~~~~~~~~~ 98 (225)
T 2id3_A 59 DALDLGEIARRAGVGKTTVYRRWGTPGGLAADLLADMAEQ 98 (225)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 4077999999979098887101899999999999999999
No 354
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG; HET: MSE; 1.54A {Mesorhizobium loti MAFF303099}
Probab=42.30 E-value=13 Score=16.25 Aligned_cols=40 Identities=18% Similarity=0.056 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 1997999999872469999998528988358999999975
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144)
.+.|-.++|++.|||.+++.+|=.++...=.+.+.....-
T Consensus 31 ~~~ti~~Ia~~agvs~~~~Y~~F~sK~~L~~~~~~~~~~~ 70 (211)
T 3bhq_A 31 DGTSMEEIATKAGASKQTVYKHFTDKETLFGEVVLSTASQ 70 (211)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 5077999999858884058777899999999999999999
No 355
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structural genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=42.17 E-value=6.7 Score=18.15 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 19979999998724699999985289883
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRV 54 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~p 54 (144)
.+.|-.++|+++|||++++.+|=.++...
T Consensus 44 ~~~T~~~IA~~aGvs~~tlY~~F~sKe~L 72 (211)
T 3fiw_A 44 DGVSTRRLAKRLGVEQPSLYWYFRTKRDL 72 (211)
T ss_dssp GGCCHHHHHHHHTSCTHHHHTTCSSHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf 53759999999892885898988998999
No 356
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=42.08 E-value=10 Score=16.97 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=18.7
Q ss_pred HHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 9852898835899999997549999995
Q gi|254780424|r 46 KYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 46 ~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
.|+.+ ..|+.+....||..+|++...+
T Consensus 19 ~F~~~-~yP~~~~r~~La~~l~l~~~qV 45 (60)
T 1jgg_A 19 EFYKE-NYVSRPRRCELAAQLNLPESTI 45 (60)
T ss_dssp HHHHC-SCCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHC-CCCCHHHHHHHHHHHCCCHHHH
T ss_conf 99867-9989899999999909983261
No 357
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=41.88 E-value=7.5 Score=17.85 Aligned_cols=42 Identities=21% Similarity=0.206 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf 199799999987246999999852898835899999997549
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~ 67 (144)
.+.|-.++|+++|||++++.+|=.++...-...+.....-+.
T Consensus 29 ~~~si~~Ia~~agvs~~tiY~yF~sK~~L~~~~~~~~~~~~~ 70 (196)
T 3col_A 29 AGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYARETNRIL 70 (196)
T ss_dssp GGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 407799999996919988858769999999999999999999
No 358
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=41.63 E-value=8.6 Score=17.45 Aligned_cols=42 Identities=12% Similarity=0.170 Sum_probs=31.3
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 819979999998724699999985289883589999999754
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
-.+.|-.++|+.+|||++++.+|=.++...=...+..+...+
T Consensus 26 ~~~~ti~~Ia~~agvs~~t~Y~~F~~Ke~L~~~~~~~~~~~~ 67 (195)
T 3pas_A 26 FSATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQV 67 (195)
T ss_dssp HHHCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 340759999998691914103429999999999999999999
No 359
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=41.59 E-value=4 Score=19.60 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHCC--C-CHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999819--9-799999987246999999
Q gi|254780424|r 14 NVGKRIRLRRMILG--M-SQEKLGECLGITFQQVQK 46 (144)
Q Consensus 14 ~iG~rIr~~R~~~g--l-TQ~eLA~~lGvs~s~is~ 46 (144)
+|-+.|..-+..-| | |..+||+.+|||++++-.
T Consensus 15 ~i~~~I~~g~l~pG~~LPse~eLa~~~gVSr~tVRe 50 (239)
T 1hw1_A 15 YIIESIWNNRFPPGTILPAERELSELIGVTRTTLRE 50 (239)
T ss_dssp HHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 999999859999919991599999998929999999
No 360
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=41.54 E-value=10 Score=16.92 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=19.1
Q ss_pred HHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 852898835899999997549999995
Q gi|254780424|r 47 YEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 47 ~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
++. ...|+.+....||..+|++...+
T Consensus 20 F~~-~~yP~~~~r~~LA~~lgl~~~~V 45 (67)
T 2k40_A 20 FRV-NCYPGIDILEDLAQKLNLELDRI 45 (67)
T ss_dssp HTT-CSSCCHHHHHHHHHHHTCCHHHH
T ss_pred HHH-CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 987-79999899999999949598895
No 361
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknown function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=41.54 E-value=6.5 Score=18.26 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=30.2
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 98199799999987246999999852898835899999997
Q gi|254780424|r 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 (144)
Q Consensus 24 ~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144)
---+.|-.++|+++|||++++.+|=.++...=...+.....
T Consensus 47 G~~~~si~~IA~~Agvs~~tiY~yF~sKe~L~~~v~~~~~~ 87 (230)
T 2iai_A 47 GYDGTSMEHLSKAAGISKSSIYHHVTGKEELLRRAVSRALD 87 (230)
T ss_dssp CTTTCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 92627299999985829101530589999999999999999
No 362
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=41.47 E-value=11 Score=16.82 Aligned_cols=48 Identities=6% Similarity=0.162 Sum_probs=31.8
Q ss_pred HHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 999999998--199799999987246999999852898835899999997
Q gi|254780424|r 17 KRIRLRRMI--LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 (144)
Q Consensus 17 ~rIr~~R~~--~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144)
--++-+.+. .+.|-.++|++.|||++++..|=.++...=...+.....
T Consensus 15 AA~~lf~e~G~~~~s~~~IA~~AGvs~~~iy~yF~sK~~L~~a~~~~~~~ 64 (213)
T 3ni7_A 15 TAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRADS 64 (213)
T ss_dssp HHHHHHHHSCSTTCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999998697687899999990999999987469975216899887899
No 363
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=41.26 E-value=12 Score=16.49 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=17.1
Q ss_pred CC-CHHHHHHHHHHHHHHHHH
Q ss_conf 99-799999987246999999
Q gi|254780424|r 27 GM-SQEKLGECLGITFQQVQK 46 (144)
Q Consensus 27 gl-TQ~eLA~~lGvs~s~is~ 46 (144)
.| |..+||+.+|||+.++.+
T Consensus 52 rLPsereLA~~~gVSR~TVR~ 72 (272)
T 3eet_A 52 RLPSQARIREEYGVSDTVALE 72 (272)
T ss_dssp BCCCHHHHHHHHTCCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
T ss_conf 990899999998949999999
No 364
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=41.08 E-value=6.5 Score=18.22 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 58999999975499999950677
Q gi|254780424|r 55 GASRLQHISEVLESPISFFFDVS 77 (144)
Q Consensus 55 s~~~L~~iA~~l~v~~~~l~~~~ 77 (144)
+.++|+.||+.|+++++.|....
T Consensus 9 ~GDTl~~IA~~y~vs~~~i~~~N 31 (48)
T 1e0g_A 9 KGDSLSSIAKRHGVNIKDVMRWN 31 (48)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 99999999999896899999865
No 365
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP}
Probab=41.03 E-value=16 Score=15.65 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=30.9
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 819979999998724699999985289883589999999754
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
-.+.|-.++|+.+|||++++.+|=.++...=...+......+
T Consensus 28 ~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~ 69 (194)
T 2nx4_A 28 IEAANMRDIATEAGYTNGALSHYFAGKDEILRTSYEHISEAT 69 (194)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 141659999998790999994306999999999999876679
No 366
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcription regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=41.00 E-value=5.9 Score=18.49 Aligned_cols=49 Identities=14% Similarity=0.063 Sum_probs=34.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9999999981997999999872469999998528988358999999975
Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 (144)
Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144)
.++=.-+--.|.|-.++|+++|||++++.+|=.++...-...+......
T Consensus 14 ~~lf~~~G~~~~sv~~IA~~aGvs~~tlY~~F~sKe~L~~av~~~~~~~ 62 (207)
T 2vpr_A 14 LILLNEVGIEGLTTRKLAQKIGVEQPTLYWHVKNKRALLDALAETILQK 62 (207)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999984935278999999878487689998898899999999999999
No 367
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=40.29 E-value=17 Score=15.58 Aligned_cols=47 Identities=9% Similarity=0.053 Sum_probs=32.4
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 99819979999998724699999985289883589999999754999
Q gi|254780424|r 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 (144)
Q Consensus 23 R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~ 69 (144)
+--.+.|-+++|++.|||++++.+|=.++...=...+.....-+...
T Consensus 24 ~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~ 70 (194)
T 2g7s_A 24 GGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAG 70 (194)
T ss_dssp HCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 49574779999998782921331158999999999999999999999
No 368
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=39.58 E-value=9.5 Score=17.20 Aligned_cols=21 Identities=10% Similarity=0.001 Sum_probs=12.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 997999999872469999998
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~ 47 (144)
++|+.++|+.++++++++++.
T Consensus 50 ~~~~~~la~~l~~~ks~vs~~ 70 (250)
T 1p4x_A 50 TLPFKKIVSDLCYKQSDLVQH 70 (250)
T ss_dssp EEEHHHHHHHSSSCGGGTHHH
T ss_pred CCCHHHHHHHHCCCCCHHHHH
T ss_conf 978999999968881069999
No 369
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=39.58 E-value=11 Score=16.85 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=18.3
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 81997999999872469999998
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
...++-.++|+.+|+|++++|+.
T Consensus 34 ~~~~~v~ela~~l~~s~~tvS~H 56 (98)
T 3jth_A 34 NQELSVGELCAKLQLSQSALSQH 56 (98)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 29937999999988595678899
No 370
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=39.48 E-value=17 Score=15.50 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=22.5
Q ss_pred HHHHHHHHHCCC-CHHHHHHHH-----HHHHHHHHHH
Q ss_conf 999999998199-799999987-----2469999998
Q gi|254780424|r 17 KRIRLRRMILGM-SQEKLGECL-----GITFQQVQKY 47 (144)
Q Consensus 17 ~rIr~~R~~~gl-TQ~eLA~~l-----Gvs~s~is~~ 47 (144)
..|+++=....+ ||+||.+.+ .||.+|||+.
T Consensus 8 ~~I~~li~~~~i~sQ~eL~~~L~~~Gi~vTQaTlSRD 44 (64)
T 2p5k_A 8 IKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRD 44 (64)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCEEHHHHHHH
T ss_conf 9999999858978899999999985983638998988
No 371
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=39.13 E-value=13 Score=16.27 Aligned_cols=22 Identities=5% Similarity=-0.032 Sum_probs=15.7
Q ss_pred CCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 8835899999997549999995
Q gi|254780424|r 52 NRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 52 ~~ps~~~L~~iA~~l~v~~~~l 73 (144)
--|+.+....||..+|++...+
T Consensus 27 pYPs~~~~~~La~~~~ls~~qV 48 (73)
T 1puf_B 27 PYPSEEAKEELAKKCGITVSQV 48 (73)
T ss_dssp CCCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHH
T ss_conf 9989999999999988299998
No 372
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA-binding, repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=39.09 E-value=6 Score=18.46 Aligned_cols=39 Identities=5% Similarity=0.020 Sum_probs=27.7
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 999981997999999872469999998528988358999
Q gi|254780424|r 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 (144)
Q Consensus 21 ~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L 59 (144)
.-+--.+.|-.++|++.|||++++.+|=.++...=...+
T Consensus 17 ~~~G~~~~si~~Ia~~agvs~~tiY~~F~sKe~L~~~~~ 55 (189)
T 3geu_A 17 SEKGYDGTTLDDIAKSVNIKKASLYYHFDSKKSIYEQSV 55 (189)
T ss_dssp HHHHHHHCCHHHHHHHTTCCHHHHTTTCSSHHHHHHHHH
T ss_pred HHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHH
T ss_conf 975936486999999879099887000898999999999
No 373
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=39.05 E-value=6.5 Score=18.25 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=31.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf 8199799999987246999999852898835899999997549
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~ 67 (144)
-.++|-.++|+++|||++++..|=.++...-...+....+.+.
T Consensus 26 ~~~~s~~~IA~~agvs~~tlY~~F~~K~~L~~~~~~~~~~~~~ 68 (183)
T 1zk8_A 26 VQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLGIYGIKKLH 68 (183)
T ss_dssp GGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 2507699999988919889988869999999999999999999
No 374
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=38.90 E-value=13 Score=16.24 Aligned_cols=23 Identities=0% Similarity=-0.068 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+.+....||..+|++...+
T Consensus 27 ~~yP~~~~~~~LA~~~gl~~~qV 49 (61)
T 1akh_A 27 KQSLNSKEKEEVAKKCGITPLQV 49 (61)
T ss_dssp CSSCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 69999999999999978698882
No 375
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=38.78 E-value=13 Score=16.40 Aligned_cols=21 Identities=5% Similarity=-0.021 Sum_probs=14.4
Q ss_pred CCCHHHHHHHHHHCCCCHHHH
Q ss_conf 835899999997549999995
Q gi|254780424|r 53 RVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 53 ~ps~~~L~~iA~~l~v~~~~l 73 (144)
-|+.+....||..+|++...+
T Consensus 25 yP~~~er~~La~~~gL~~~qV 45 (60)
T 1k61_A 25 YLDTKGLENLMKNTSLSRIQI 45 (60)
T ss_dssp CCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCHHHHHHHHHHHCCCHHHH
T ss_conf 969999999999988099999
No 376
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=38.76 E-value=18 Score=15.43 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=14.2
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 81997999999872469999998
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
..|+|-+|.|+.+++|..|+..+
T Consensus 210 ~~G~~~~eia~~l~is~~tv~~h 232 (258)
T 3clo_A 210 RKGLSSKEIAATLYISVNTVNRH 232 (258)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 85999999998949999999999
No 377
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=38.58 E-value=13 Score=16.27 Aligned_cols=43 Identities=19% Similarity=0.342 Sum_probs=27.0
Q ss_pred CCCCCCCHHHH-HHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHH
Q ss_conf 87668998999-999999999998------19979999998724699999
Q gi|254780424|r 3 GNKKIPNPVDI-NVGKRIRLRRMI------LGMSQEKLGECLGITFQQVQ 45 (144)
Q Consensus 3 ~~~~~~~~~d~-~iG~rIr~~R~~------~glTQ~eLA~~lGvs~s~is 45 (144)
++..+|...-. .|-++||..=.. --|+..+||+.+|||++.|-
T Consensus 18 ~~~~~~~~~~~~~v~~~lr~~I~~g~l~pG~~L~e~~La~~~gvSRtpVR 67 (237)
T 3c7j_A 18 GNEQPPAHLARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVR 67 (237)
T ss_dssp CCCCCCGGGHHHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 57899974389999999999998199999097499999998895869999
No 378
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, multidrug-binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3d71_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=38.43 E-value=16 Score=15.67 Aligned_cols=47 Identities=9% Similarity=0.154 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHH-CCCCCCCH---------------H--HHHHHHHHCCCCHHHHH
Q ss_conf 979999998724699999985-28988358---------------9--99999975499999950
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYE-KGVNRVGA---------------S--RLQHISEVLESPISFFF 74 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E-~G~~~ps~---------------~--~L~~iA~~l~v~~~~l~ 74 (144)
+|=.++|+.+|||+.|+-.|| .|--.|+. . ...+.-+-+|+|+...-
T Consensus 6 ysIge~akl~giS~~tLRyYd~~GLl~P~~~d~~ngYRyYs~~qi~~l~~I~~lr~lg~sL~eIk 70 (278)
T 1r8e_A 6 YSIGEVSKLANVSIKALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMK 70 (278)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTCCHHHHH
T ss_pred EEHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 31999999988598899999968898997887999977739999999999999998699899999
No 379
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2; 2.40A {Streptomyces coelicolor A3}
Probab=38.36 E-value=5 Score=18.99 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=31.5
Q ss_pred HHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 9999999999--819979999998724699999985289883589999999
Q gi|254780424|r 15 VGKRIRLRRM--ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 (144)
Q Consensus 15 iG~rIr~~R~--~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA 63 (144)
+.--++-+.+ -.++|-.++|+++|||+.++.+|=.++...=...+..+.
T Consensus 22 l~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~ 72 (237)
T 2hxo_A 22 VGAAVELLDTVGERGLTFRALAERLATGPGAIYWHITGKAELLGAATDAVV 72 (237)
T ss_dssp HHHHHHHHHHTTTTTCCHHHHHHHHTSCGGGGGGTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999999839352779999998784956530108898999999999999
No 380
>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=38.29 E-value=18 Score=15.38 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=19.3
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 81997999999872469999998
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
...+|-.+||+.+|+|++++|+-
T Consensus 32 ~~~~~v~eLa~~l~is~s~vS~H 54 (114)
T 2oqg_A 32 RADQSASSLATRLPVSRQAIAKH 54 (114)
T ss_dssp HSCBCHHHHHHHSSSCHHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 19928999998888898899999
No 381
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural genomics, PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=38.15 E-value=14 Score=16.01 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 19979999998724699999985289883589999
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~ 60 (144)
.++|-.++|++.|||++++.+|=.++...=...+.
T Consensus 60 ~~~sv~~IA~~AGvs~~t~Y~hF~sK~~Ll~av~~ 94 (273)
T 3c07_A 60 DRTTMRAIAQEAGVSVGNAYYYFAGKEHLIQGFYD 94 (273)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHH
T ss_conf 41789999999891999999995876789999999
No 382
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=38.00 E-value=14 Score=16.09 Aligned_cols=23 Identities=9% Similarity=0.172 Sum_probs=15.9
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+......||..||++..-+
T Consensus 24 ~~yPs~~~r~~LA~~lgl~~~qV 46 (68)
T 1ftt_A 24 QKYLSAPEREHLASMIHLTPTQV 46 (68)
T ss_dssp SSSCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHE
T ss_conf 79979999999999819887880
No 383
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=37.69 E-value=13 Score=16.23 Aligned_cols=41 Identities=10% Similarity=0.030 Sum_probs=27.0
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 8199799999987246999999852898835899999997549999995
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
.+.+|.+++...-. -|+. ...|+.+....||..+|++....
T Consensus 8 ~rr~T~eQl~~Le~-------~F~~-~~yP~~~~~~~LA~~lgls~~qV 48 (66)
T 3nau_A 8 HRKKTKEQIAHLKA-------SFLQ-SQFPDDAEVYRLIEVTGLARSEI 48 (66)
T ss_dssp ---CCHHHHHHHHH-------HHHG-GGSCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCCCHHHHHHHHH-------HHHH-CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 57799999999999-------9998-28998999999999988999998
No 384
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=37.43 E-value=11 Score=16.81 Aligned_cols=36 Identities=19% Similarity=0.088 Sum_probs=26.7
Q ss_pred HHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999--81997999999872469999998528
Q gi|254780424|r 15 VGKRIRLRRM--ILGMSQEKLGECLGITFQQVQKYEKG 50 (144)
Q Consensus 15 iG~rIr~~R~--~~glTQ~eLA~~lGvs~s~is~~E~G 50 (144)
|-+-+..++. ...+|.++||+.+|+|.+++++.=+-
T Consensus 13 i~~i~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 50 (129)
T 1bl0_A 13 IHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKK 50 (129)
T ss_dssp HHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999982489999999999989299999999999
No 385
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Pseudomonas aeruginosa}
Probab=37.36 E-value=11 Score=16.81 Aligned_cols=44 Identities=14% Similarity=0.155 Sum_probs=31.4
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 99819979999998724699999985289883589999999754
Q gi|254780424|r 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 23 R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
+--.+.|-.++|+..|||++++.+|=.++...=...+..+...+
T Consensus 30 ~G~~~~s~~~Ia~~agvs~~tlY~~F~sKe~L~~~v~~~~~~~~ 73 (215)
T 3e7q_A 30 HGFQGASVRKICAEAGVSVGLINHHYDGKDALVAEAYLAVTGRV 73 (215)
T ss_dssp HHHHHCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 49040779999999793988999886888999999999999888
No 386
>2dbf_A Nuclear factor NF-kappa-B P105 subunit; apoptosis, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.13 E-value=19 Score=15.26 Aligned_cols=44 Identities=7% Similarity=0.080 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 97999999872469999998528988358999999975499999950
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~ 74 (144)
=.=..||+++|++. .|..++.+. .|+...|..... -+.++..|+
T Consensus 31 ~dWr~LA~~Lg~~~-~i~~~~~~~-sPt~~LL~~w~~-~~~tv~~L~ 74 (100)
T 2dbf_A 31 KNWATLAQKLGLGI-LNNAFRLSP-APSKTLMDNYEV-SGGTVRELV 74 (100)
T ss_dssp SSHHHHHHHHTCGG-GHHHHHHSS-CHHHHHHHHHHH-TCCCHHHHH
T ss_pred CCHHHHHHHCCCHH-HHHHHHCCC-CHHHHHHHHHHC-CCCCHHHHH
T ss_conf 88999999929889-999997289-879999999980-899799999
No 387
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=37.01 E-value=16 Score=15.67 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=10.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHH
Q ss_conf 819979999998724699999
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQ 45 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is 45 (144)
-.|+|+++.+++-||+.++++
T Consensus 58 V~G~~rk~ac~r~~V~~syfS 78 (111)
T 3m8j_A 58 VSGHSRKDVCEKYQMNNGYFS 78 (111)
T ss_dssp TTCCCHHHHHHHTTCCHHHHH
T ss_pred HCCCHHHHHHHHHCCCHHHHH
T ss_conf 848709999999099789999
No 388
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=36.98 E-value=15 Score=15.96 Aligned_cols=21 Identities=5% Similarity=-0.058 Sum_probs=12.6
Q ss_pred CCCHHHHHHHHHHCCCCHHHH
Q ss_conf 835899999997549999995
Q gi|254780424|r 53 RVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 53 ~ps~~~L~~iA~~l~v~~~~l 73 (144)
-|+.+....||..+|++...+
T Consensus 34 YPs~~ek~~La~~~gl~~~qV 54 (73)
T 1x2n_A 34 YPTEDEKKQIAAQTNLTLLQV 54 (73)
T ss_dssp CCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHHHHCCCHHHH
T ss_conf 969999999999988199998
No 389
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=36.94 E-value=15 Score=15.89 Aligned_cols=39 Identities=10% Similarity=0.213 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 99799999987246999999852898835899999997549999995
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
.+|..+++..- ..|+. ...|+.+.+..||..+|++...+
T Consensus 13 ~~t~~q~~~Le-------~~F~~-~~~P~~~~~~~La~~~~l~~~qV 51 (70)
T 2da1_A 13 RITDDQLRVLR-------QYFDI-NNSPSEEQIKEMADKSGLPQKVI 51 (70)
T ss_dssp CCCHHHHHHHH-------HHHHH-CSSCCTTHHHHHHHHHCCCHHHH
T ss_pred CCCHHHHHHHH-------HHHHH-CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 89999999999-------99997-59989999999999979199998
No 390
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=36.91 E-value=13 Score=16.24 Aligned_cols=40 Identities=10% Similarity=-0.007 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 1997999999872469999998528988358999999975
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144)
-+.|-.++|+.+|||+.++.+|=.++...=...+......
T Consensus 34 ~~~T~~~IA~~aGvs~~tlY~~F~sKe~L~~a~~~~~~~~ 73 (199)
T 2rek_A 34 ADASLEEIARRAGVGSATLHRHFPSRWGLLQAVFQERVAQ 73 (199)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 7888999999979199999877589988999999999998
No 391
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription factor, alternative splicing, developmental protein; 2.6A {Mus musculus}
Probab=36.84 E-value=15 Score=15.94 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 99799999987246999999852898835899999997549999995
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
-+|..++...- ..++. ...|+.+....||+.+|++..-+
T Consensus 9 ~ft~~Q~~~Le-------~~F~~-~~yps~~~r~~LA~~lgl~~~qV 47 (62)
T 2vi6_A 9 VFSQAQLCALK-------DRFQK-QKYLSLQQMQELSSILNLSYKQV 47 (62)
T ss_dssp CCCHHHHHHHH-------HHHHH-CSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHH-------HHHHH-CCCCCHHHHHHHHHHCCCCHHHH
T ss_conf 98999999999-------99987-79999899999999919887782
No 392
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=36.75 E-value=15 Score=15.90 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 997999999872469999998
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~ 47 (144)
-++-.+||+.+|+|++++|+.
T Consensus 59 ~~~v~ela~~l~~s~stvS~H 79 (122)
T 1r1t_A 59 ELCVGDLAQAIGVSESAVSHQ 79 (122)
T ss_dssp CBCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHH
T ss_conf 976999999989198889999
No 393
>2qko_A Possible transcriptional regulator, TETR family protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Rhodococcus SP}
Probab=36.66 E-value=19 Score=15.22 Aligned_cols=46 Identities=11% Similarity=0.024 Sum_probs=32.0
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCH
Q ss_conf 8199799999987246999999852898835899999997549999
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~ 70 (144)
-.+.|-.++|+..|||++++.+|=.++...=...+......+.-.+
T Consensus 46 ~~~~Ti~~IA~~Agvs~~tlY~~F~sK~~Ll~a~~~~~~~~~~~~~ 91 (215)
T 2qko_A 46 ARGLTFRAVDVEANVPKGTASNYFPSRDDLFDQVGKRIHERLGPDP 91 (215)
T ss_dssp TTTCCHHHHHHHSSSTTTCHHHHCSCHHHHHHHHHHHGGGTC----
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 1407899999987868406988847989999999999999999999
No 394
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=36.43 E-value=19 Score=15.19 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=18.1
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 81997999999872469999998
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
...++-.++|+.+|+|++++|+-
T Consensus 37 ~~~~~v~el~~~l~~s~s~vS~H 59 (106)
T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQ 59 (106)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 29967999999876586589999
No 395
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=36.19 E-value=15 Score=15.89 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=16.7
Q ss_pred CCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 9883589999999754999999
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISF 72 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~ 72 (144)
...|+.+....||..+|++...
T Consensus 22 ~~yP~~~~r~~LA~~l~l~~~~ 43 (58)
T 1ig7_A 22 KQYLSIAERAEFSSSLSLTETQ 43 (58)
T ss_dssp CSCCCHHHHHHHHHHTTCCHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHH
T ss_conf 7997999999999995969888
No 396
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=36.12 E-value=20 Score=15.16 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHH------CCC-CHHHHHHHHHHHHHHHHH
Q ss_conf 999999999998------199-799999987246999999
Q gi|254780424|r 14 NVGKRIRLRRMI------LGM-SQEKLGECLGITFQQVQK 46 (144)
Q Consensus 14 ~iG~rIr~~R~~------~gl-TQ~eLA~~lGvs~s~is~ 46 (144)
.|-+.|+..=.. -.| |..+||+.+|||++++.+
T Consensus 8 qI~~~I~~~I~~g~~~pG~~LPse~~La~~~gVSr~tVR~ 47 (129)
T 2ek5_A 8 QIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARN 47 (129)
T ss_dssp HHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 9999999999859999969987899999892999999999
No 397
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134}
Probab=35.97 E-value=12 Score=16.53 Aligned_cols=32 Identities=16% Similarity=0.037 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999981------9979999998724699999
Q gi|254780424|r 14 NVGKRIRLRRMIL------GMSQEKLGECLGITFQQVQ 45 (144)
Q Consensus 14 ~iG~rIr~~R~~~------glTQ~eLA~~lGvs~s~is 45 (144)
.|-+.|+..=..- .|+..+||+.+|||++.+-
T Consensus 20 ~v~~~i~~~I~~G~l~pG~~L~e~~La~~~gvSRtpVR 57 (222)
T 3ihu_A 20 TVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVR 57 (222)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999999998499999297189999999893979999
No 398
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=35.96 E-value=20 Score=15.15 Aligned_cols=40 Identities=10% Similarity=0.092 Sum_probs=29.0
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 9981997999999872469999998528988358999999
Q gi|254780424|r 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 (144)
Q Consensus 23 R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~i 62 (144)
.--.+.|-.++|+.+|||++++.+|=.++...=.+.+...
T Consensus 21 ~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~ 60 (202)
T 2id6_A 21 KGYDRATTDEIAEKAGVAKGLIFHYFKNKEELYYQAYMSV 60 (202)
T ss_dssp HHHHHCCHHHHHHHHTCCTHHHHHHHSSHHHHHHHHHHHH
T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 2904164999999879099999840899999999999985
No 399
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.61 E-value=15 Score=15.96 Aligned_cols=23 Identities=0% Similarity=-0.078 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+.+....||..+|++...+
T Consensus 29 ~~yP~~~~~~~LA~~l~l~~~~V 51 (70)
T 2dmu_A 29 TKYPDVGTREQLARKVHLREEKV 51 (70)
T ss_dssp CSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 79999899999999959898994
No 400
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=35.60 E-value=20 Score=15.11 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=24.2
Q ss_pred HHHHHHHHHCCC-CHHHHHHHHH-----HHHHHHHHHH
Q ss_conf 999999998199-7999999872-----4699999985
Q gi|254780424|r 17 KRIRLRRMILGM-SQEKLGECLG-----ITFQQVQKYE 48 (144)
Q Consensus 17 ~rIr~~R~~~gl-TQ~eLA~~lG-----vs~s~is~~E 48 (144)
+.|+++=....+ ||+||.+.+. |+++|+|+.-
T Consensus 8 ~~I~~lI~~~~I~tQeeL~~~L~~~Gi~vTQATiSRDl 45 (149)
T 1b4a_A 8 IKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDI 45 (149)
T ss_dssp HHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 99999998589788999999999869854089988889
No 401
>1t33_A Putative transcriptional repressor (TETR/ACRR family); structural genomics, TETR/CCRR family, helix turn helix DNA binding domain; 2.20A {Salmonella typhimurium LT2} SCOP: a.4.1.9 a.121.1.1
Probab=35.57 E-value=18 Score=15.34 Aligned_cols=32 Identities=9% Similarity=0.095 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 79999998724699999985289883589999
Q gi|254780424|r 29 SQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 (144)
Q Consensus 29 TQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~ 60 (144)
|-.++|+.+|||++++.+|=.++...=...+.
T Consensus 33 T~~~IA~~aGvs~~~iY~~F~sKe~L~~~v~~ 64 (224)
T 1t33_A 33 TTRDIAALAGQNIAAITYYFGSKEDLYLACAQ 64 (224)
T ss_dssp CHHHHHHHHTSCHHHHHHHHSSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 79999998099802123578999999999999
No 402
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=35.06 E-value=15 Score=15.84 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 99799999987246999999852898835899999997549999995
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
-+|.++++..- ..|+.+ ..|+.+....||..+|++....
T Consensus 9 ~~t~~Q~~~Le-------~~F~~n-~~P~~~~~~~LA~~~~L~~~qV 47 (66)
T 1bw5_A 9 VLNEKQLHTLR-------TCYAAN-PRPDALMKEQLVEMTGLSPRVI 47 (66)
T ss_dssp CCSHHHHHHHH-------HHHHHC-SCCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCHHHHHHHH-------HHHHHC-CCCCHHHHHHHHHHHCCCHHHH
T ss_conf 98999999999-------999885-9999999999999939099998
No 403
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=35.04 E-value=18 Score=15.33 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 1997999999872469999998528988358999999975
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~ 65 (144)
.+.|-.++|++.|||++++.+|=.++...=...+.....-
T Consensus 33 ~~~t~~~Ia~~agvs~~tlY~~F~~K~~L~~a~~~~~~~~ 72 (203)
T 3ccy_A 33 SETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTTHVDS 72 (203)
T ss_dssp TTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCCCCCHHCCCCHHHHHHHHHHHHHHH
T ss_conf 5278999999858986773024899999999999999999
No 404
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=35.00 E-value=16 Score=15.65 Aligned_cols=46 Identities=7% Similarity=-0.003 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 9799999987246999999852898835899999997549999995
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
.|-.++|+..|||++++.+|=.++...=...+..+...+.-.+..+
T Consensus 35 ~T~~~IA~~agvs~~tiY~~F~sK~~L~~~~~~~~~~~~~~~~~~~ 80 (194)
T 2q24_A 35 AHLERIAREAGVGSGTLYRNFPTREALIEAAYRNEVARLCDSVPGL 80 (194)
T ss_dssp CCHHHHHHHTTCCHHHHHHHCCSHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7699999983988746988769999999999999999888899987
No 405
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=34.83 E-value=17 Score=15.57 Aligned_cols=19 Identities=5% Similarity=0.008 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHCCCCHHH
Q ss_conf 3589999999754999999
Q gi|254780424|r 54 VGASRLQHISEVLESPISF 72 (144)
Q Consensus 54 ps~~~L~~iA~~l~v~~~~ 72 (144)
|+.+....||..+|++...
T Consensus 31 P~~~~k~~La~~~~l~~~q 49 (64)
T 1du6_A 31 PSEEAKEELAKKCGITVSQ 49 (64)
T ss_dssp CCHHHHHHHHHHHTSCHHH
T ss_pred CCHHHHHHHHHHHCCCHHH
T ss_conf 6999999999998919999
No 406
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=34.51 E-value=17 Score=15.52 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+......||..+|++...+
T Consensus 24 ~~yp~~~~r~~LA~~lgl~~~qV 46 (68)
T 1zq3_P 24 GRYLTAPRLADLSAKLALGTAQV 46 (68)
T ss_dssp CSSCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 69989999999999979975687
No 407
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=34.22 E-value=19 Score=15.29 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 99799999987246999999852898835899999997549999995
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
-+|..++...- ..|+. ...|+......||..+|++...+
T Consensus 9 ~ft~~Ql~~Le-------~~F~~-n~~Ps~~~r~~LA~~lgl~~~~V 47 (61)
T 2hdd_A 9 AFSSEQLARLK-------REFNE-NRYLTERRRQQLSSELGLNEAQI 47 (61)
T ss_dssp CCCHHHHHHHH-------HHHHH-CSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHH-------HHHHH-CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 89999999999-------99986-79979999999999979687880
No 408
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=33.95 E-value=14 Score=16.19 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHHH----HHHHCC------------CCCCCHHHHHHHHHH
Q ss_conf 97999999872469999----998528------------988358999999975
Q gi|254780424|r 28 MSQEKLGECLGITFQQV----QKYEKG------------VNRVGASRLQHISEV 65 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~i----s~~E~G------------~~~ps~~~L~~iA~~ 65 (144)
|+..+||+.+|||++.| ...|.- ...++.+.+..+..+
T Consensus 52 L~E~~La~~~gVSRtpvREAL~~L~~~GlV~~~~~~G~~V~~~~~~~~~dl~~~ 105 (239)
T 2hs5_A 52 LSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVRVPTAEDITELYIC 105 (239)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 089999999896959999999999985766630367763321136542117999
No 409
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia}
Probab=33.94 E-value=9.1 Score=17.31 Aligned_cols=48 Identities=17% Similarity=0.022 Sum_probs=33.0
Q ss_pred HHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 999999--819979999998724699999985289883589999999754
Q gi|254780424|r 19 IRLRRM--ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 19 Ir~~R~--~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
++-+.+ -.|.|-.++|+..|||++++.+|=.++...=.+.+..+..-+
T Consensus 21 ~~l~~~~G~~~~t~~~Ia~~Agvs~g~lY~~F~sK~~L~~~~~~~~~~~~ 70 (219)
T 2w53_A 21 EACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHLPF 70 (219)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99999859240889999998488955420478999999999999999999
No 410
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=33.94 E-value=9 Score=17.33 Aligned_cols=40 Identities=8% Similarity=0.028 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999998--1997999999872469999998528
Q gi|254780424|r 11 VDINVGKRIRLRRMI--LGMSQEKLGECLGITFQQVQKYEKG 50 (144)
Q Consensus 11 ~d~~iG~rIr~~R~~--~glTQ~eLA~~lGvs~s~is~~E~G 50 (144)
.+.-+---++-+... .+.|-.++|+..|||++++.+|=.+
T Consensus 8 R~~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~~~y~~F~s 49 (191)
T 1sgm_A 8 REKILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPN 49 (191)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCC
T ss_conf 999999999999983925077999999869198899788499
No 411
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=33.90 E-value=8.7 Score=17.42 Aligned_cols=23 Identities=4% Similarity=-0.035 Sum_probs=18.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 81997999999872469999998
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
...+|-.|||+.+|+|++++|+-
T Consensus 69 ~g~~tv~eLa~~l~is~stvS~H 91 (151)
T 3f6v_A 69 SGEQTVNNLAAHFPASRSAISQH 91 (151)
T ss_dssp GCCEEHHHHHTTSSSCHHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 09938999999989199999999
No 412
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.89 E-value=16 Score=15.66 Aligned_cols=23 Identities=9% Similarity=0.091 Sum_probs=17.7
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+.+....||..++++...+
T Consensus 29 ~~~P~~~~~~~La~~l~l~~~qV 51 (80)
T 2dmq_A 29 NHNPDAKDLKQLAQKTGLTKRVL 51 (80)
T ss_dssp CSSCCHHHHHHHHHHTCCCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 69979999999999969599996
No 413
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens}
Probab=33.87 E-value=18 Score=15.45 Aligned_cols=21 Identities=5% Similarity=-0.043 Sum_probs=12.8
Q ss_pred CCCHHHHHHHHHHCCCCHHHH
Q ss_conf 835899999997549999995
Q gi|254780424|r 53 RVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 53 ~ps~~~L~~iA~~l~v~~~~l 73 (144)
-|+.+....||..+|++...+
T Consensus 25 YPs~~ek~~La~~~~ls~~qV 45 (67)
T 3k2a_A 25 YPSEEQKKQLAQDTGLTILQV 45 (67)
T ss_dssp CCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCHHHHHHHHHHHCCCHHHH
T ss_conf 989999999999989099999
No 414
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=33.81 E-value=18 Score=15.44 Aligned_cols=22 Identities=5% Similarity=0.036 Sum_probs=14.3
Q ss_pred CCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 9883589999999754999999
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISF 72 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~ 72 (144)
...|+.+....||..+|++...
T Consensus 19 ~~yp~~~~r~~LA~~l~l~~~q 40 (56)
T 3a03_A 19 QKYLASAERAALAKALRMTDAQ 40 (56)
T ss_dssp CSSCCHHHHHHHHHHHTCCHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHH
T ss_conf 7996999999999986698678
No 415
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=33.79 E-value=20 Score=15.18 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=14.7
Q ss_pred CCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 8835899999997549999995
Q gi|254780424|r 52 NRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 52 ~~ps~~~L~~iA~~l~v~~~~l 73 (144)
..|+.+....||..+|++...+
T Consensus 40 ~~P~~~~~~~LA~~lgl~~~~I 61 (80)
T 2da3_A 40 SNPTRKMLDHIAHEVGLKKRVV 61 (80)
T ss_dssp SSCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHH
T ss_conf 9999999999999979099995
No 416
>3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A*
Probab=33.55 E-value=18 Score=15.48 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHH------CCCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999998------19979999998724699999
Q gi|254780424|r 14 NVGKRIRLRRMI------LGMSQEKLGECLGITFQQVQ 45 (144)
Q Consensus 14 ~iG~rIr~~R~~------~glTQ~eLA~~lGvs~s~is 45 (144)
.|-+.||+.=.. --|+..+||+.+|||++.|-
T Consensus 24 ~Vy~~L~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVR 61 (226)
T 3dbw_A 24 KVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVR 61 (226)
T ss_dssp HHHHHHHHHHHTTSSCTTCBCCHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHH
T ss_conf 99999999998199999099699999999892989999
No 417
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=33.44 E-value=21 Score=14.97 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=13.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 997999999872469999998
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~ 47 (144)
..+..++|+.+|||++++++.
T Consensus 31 ~v~~~~iA~~L~vs~~svt~~ 51 (139)
T 2x4h_A 31 GAKINRIAKDLKIAPSSVFEE 51 (139)
T ss_dssp CBCHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHCCCCHHHHHH
T ss_conf 866999999968890799999
No 418
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=33.32 E-value=15 Score=15.86 Aligned_cols=24 Identities=4% Similarity=0.043 Sum_probs=18.8
Q ss_pred CCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 898835899999997549999995
Q gi|254780424|r 50 GVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 50 G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
-...|+.+....||..+|++...+
T Consensus 28 ~~~yP~~~~r~~LA~~lgL~~~~V 51 (80)
T 2cue_A 28 RTHYPDVFARERLAAKIDLPEARI 51 (80)
T ss_dssp TCSSCCHHHHHHHHHHTTCCHHHH
T ss_pred HCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 669989999999999979888783
No 419
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=33.07 E-value=7.4 Score=17.89 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=25.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 81997999999872469999998528988358
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~ 56 (144)
-.+.|-.++|+.+|||++++.+|=.++...=.
T Consensus 48 ~~~~T~~~IA~~aGvs~~tlY~~F~~K~~L~~ 79 (212)
T 2np3_A 48 FDATSLRRIAETAGVDQSLVHHFYGTKENLFL 79 (212)
T ss_dssp -----------------------CCC-CHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHH
T ss_conf 13067999999978197556687829999997
No 420
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=33.01 E-value=19 Score=15.27 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 99799999987246999999852898835899999997549999995
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
++|..+++..= ..|++....|+.+....||..+|++...+
T Consensus 8 ~~T~~Ql~~Le-------~~F~~~n~yP~~~~r~~LA~~lgl~~~~V 47 (73)
T 2hi3_A 8 GPTEDQVEILE-------YNFNKVNKHPDPTTLCLIAAEAGLTEEQT 47 (73)
T ss_dssp SCCHHHHHHHH-------HHHHHTTSSCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCHHHHHHHH-------HHHHHCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 99999999999-------99988589939999999999959987786
No 421
>2ev1_A Hypothetical protein RV1264/MT1302; alpha-helical, regulatory domain of adenylyl cyclase, oleic acid, lyase; HET: OLA 1PE; 1.60A {Mycobacterium tuberculosis} PDB: 2ev2_A* 2ev3_A* 2ev4_A*
Probab=32.92 E-value=18 Score=15.44 Aligned_cols=23 Identities=17% Similarity=0.479 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 97999999872469999998528
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEKG 50 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~G 50 (144)
+|-.|+|+..||+..++.+|++-
T Consensus 79 Yt~rEvAe~tGV~~e~~rr~wRa 101 (222)
T 2ev1_A 79 VSAREISENYGVDLELLQRVQRA 101 (222)
T ss_dssp ECHHHHHHHHTCCHHHHHHHHHH
T ss_pred ECHHHHHHHHCCCHHHHHHHHHH
T ss_conf 86999999979199999999998
No 422
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=32.49 E-value=17 Score=15.62 Aligned_cols=39 Identities=10% Similarity=0.208 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 99799999987246999999852898835899999997549999995
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
-+|..+++..- .-|+.+ ..|+.+.+..||..+|++...+
T Consensus 13 ~ft~~q~~~Le-------~~F~~~-~~P~~~~~~~La~~~~l~~~qV 51 (70)
T 2da2_A 13 RFTDYQLRVLQ-------DFFDAN-AYPKDDEFEQLSNLLNLPTRVI 51 (70)
T ss_dssp CCCHHHHHHHH-------HHHHHC-SSCCHHHHHHHHHHSCCCHHHH
T ss_pred CCCHHHHHHHH-------HHHHHC-CCCCHHHHHHHHHHHCCCHHHH
T ss_conf 89999999999-------999986-9989999999999949598893
No 423
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=32.48 E-value=18 Score=15.47 Aligned_cols=40 Identities=10% Similarity=0.331 Sum_probs=29.5
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHH-----CCCCCCCHHHHHHHHHH
Q ss_conf 19-979999998724699999985-----28988358999999975
Q gi|254780424|r 26 LG-MSQEKLGECLGITFQQVQKYE-----KGVNRVGASRLQHISEV 65 (144)
Q Consensus 26 ~g-lTQ~eLA~~lGvs~s~is~~E-----~G~~~ps~~~L~~iA~~ 65 (144)
.| +|++|++++-|+|.+.+..|. .|.+......+.+.-+.
T Consensus 48 ~G~~S~~EAcrrY~LS~eEf~~W~~a~~~hGe~aLRatr~q~yRql 93 (101)
T 2oa4_A 48 YGLITLAEAKQTYGLSDEEFNSWVSALAEHGKDALKVTALKKYRQL 93 (101)
T ss_dssp HTTCCHHHHHHTTCSSHHHHHHHHHHHHCCCSSSSCCHHHHHHHHT
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3845799999883999999999999999984999988278999999
No 424
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=32.46 E-value=22 Score=14.79 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=43.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 9987668998999999999999998199-79999998724699999985289883589999999754
Q gi|254780424|r 1 MVGNKKIPNPVDINVGKRIRLRRMILGM-SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 1 ~~~~~~~~~~~d~~iG~rIr~~R~~~gl-TQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
|..-+..|| ||..+.+.=...|+ |.++|... |- ...+-++..-...++...|+.+..++
T Consensus 3 m~~L~~LPN-----ig~~~e~~L~~iGI~~~~~L~~~-ga-~~~y~rLk~~~~~~~~~~L~aL~gAl 62 (93)
T 3bqs_A 3 LANLSELPN-----IGKVLEQDLIKAGIKTPVELKDV-GS-KEAFLRIWENDSSVCMSELYALEGAV 62 (93)
T ss_dssp CSCGGGSTT-----CCHHHHHHHHHTTCCSHHHHHHH-HH-HHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHCCC-----CCHHHHHHHHHCCCCCHHHHHHC-CH-HHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 677724899-----99999999999399989999867-99-99999999868996099999999999
No 425
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D
Probab=32.42 E-value=23 Score=14.78 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=19.9
Q ss_pred HHHHH-CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99998-1997999999872469999998
Q gi|254780424|r 21 LRRMI-LGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 21 ~~R~~-~glTQ~eLA~~lGvs~s~is~~ 47 (144)
.+-.. ...+..++|+.+|||+++++..
T Consensus 15 ~l~~~~~~v~~~dlA~~L~vs~~sv~~~ 42 (142)
T 1on2_A 15 MLIEEKGYARVSDIAEALAVHPSSVTKM 42 (142)
T ss_dssp HHHHHHSSCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9985379886999999969887899999
No 426
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=32.23 E-value=19 Score=15.23 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=17.2
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+.+....||..||++...+
T Consensus 31 ~~yP~~~~r~~LA~~lgl~~~qV 53 (77)
T 1nk2_P 31 QRYLSAPEREHLASLIRLTPTQV 53 (77)
T ss_dssp CSCCCHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 79989999999999949886572
No 427
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=32.16 E-value=23 Score=14.76 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=21.6
Q ss_pred HHHHHHHHH-HHHCCCCHHHH---HHHHHHHHHHHHHH
Q ss_conf 999999999-99819979999---99872469999998
Q gi|254780424|r 14 NVGKRIRLR-RMILGMSQEKL---GECLGITFQQVQKY 47 (144)
Q Consensus 14 ~iG~rIr~~-R~~~glTQ~eL---A~~lGvs~s~is~~ 47 (144)
.+-+++|++ |....+||++| |.++|....+|-++
T Consensus 7 ~ve~klkefv~rhq~itqe~lh~yaq~lgln~~ai~qf 44 (52)
T 1y66_A 7 EVERKLKEFVRRHQEITQETLHEYAQKLGLNQQAIEQF 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999999976999999999839769999999
No 428
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.06 E-value=20 Score=15.15 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=18.5
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+.+.+..||..+|++...+
T Consensus 25 n~~Ps~~~~~~LA~~~~l~~~qV 47 (64)
T 2e19_A 25 NAQPSAEELSKIADSVNLPLDVV 47 (64)
T ss_dssp CSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 79959999999999988098994
No 429
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.95 E-value=19 Score=15.28 Aligned_cols=26 Identities=4% Similarity=-0.063 Sum_probs=19.1
Q ss_pred HHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 852898835899999997549999995
Q gi|254780424|r 47 YEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 47 ~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
|+. ...|+.+....||..+|++...+
T Consensus 26 F~~-~~~P~~~~~~~LA~~~gL~~~qV 51 (75)
T 2da5_A 26 FAQ-NPLPLDEELDRLRSETKMTRREI 51 (75)
T ss_dssp HHH-CSSCCHHHHHHHHHHHCCCHHHH
T ss_pred HHH-CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 998-69998999999999929799999
No 430
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=31.94 E-value=20 Score=15.18 Aligned_cols=23 Identities=4% Similarity=0.089 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+.+....||..+|++...+
T Consensus 29 ~~yP~~~~r~~LA~~l~l~~~qV 51 (70)
T 2e1o_A 29 QKYLSPPERKRLAKMLQLSERQV 51 (70)
T ss_dssp CSSCCHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 59999999999999959898895
No 431
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=31.88 E-value=19 Score=15.26 Aligned_cols=21 Identities=5% Similarity=-0.021 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHCCCCHHHH
Q ss_conf 835899999997549999995
Q gi|254780424|r 53 RVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 53 ~ps~~~L~~iA~~l~v~~~~l 73 (144)
-|+.+....||..+|++...+
T Consensus 29 YPs~~~~~~La~~~gL~~~qV 49 (83)
T 1le8_B 29 YLDTKGLENLMKNTSLSRIQI 49 (83)
T ss_dssp CCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCHHHHHHHHHHHCCCHHHH
T ss_conf 969999999999978899998
No 432
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=31.80 E-value=20 Score=15.06 Aligned_cols=21 Identities=5% Similarity=-0.020 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHHHCCCCHHHH
Q ss_conf 835899999997549999995
Q gi|254780424|r 53 RVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 53 ~ps~~~L~~iA~~l~v~~~~l 73 (144)
-|+.+....||..+|++...+
T Consensus 28 yP~~~~~~~La~~~gl~~~qV 48 (87)
T 1b72_B 28 YPSEEAKEELAKKCGITVSQV 48 (87)
T ss_dssp CCCHHHHHHHHHHHTSCHHHH
T ss_pred CCCHHHHHHHHHHHCCCHHHH
T ss_conf 979999999999988298899
No 433
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=31.65 E-value=23 Score=14.70 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=20.1
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 81997999999872469999998
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
..-+|-.+||+.+|+|++++++.
T Consensus 26 ~~~~~~~ela~~l~is~~~v~~H 48 (202)
T 2p4w_A 26 KRPYFVSELSRELGVGQKAVLEH 48 (202)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 39998999999989099899999
No 434
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=31.58 E-value=22 Score=14.85 Aligned_cols=23 Identities=0% Similarity=-0.119 Sum_probs=15.8
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+......||.-||++...+
T Consensus 40 ~~yP~~~~r~~LA~~l~l~~~~V 62 (81)
T 1fjl_A 40 TQYPDIYTREELAQRTNLTEARI 62 (81)
T ss_dssp CSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 69999899999999929998891
No 435
>1ocp_A OCT-3; DNA-binding protein; NMR {Mus musculus} SCOP: a.4.1.1
Probab=31.54 E-value=19 Score=15.28 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+.+....||..+|+++..+
T Consensus 30 ~~~P~~~~~~~LA~~~~l~~~~V 52 (67)
T 1ocp_A 30 CPKPSLQQITHIANQLGLEKDVV 52 (67)
T ss_dssp CSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 69979999999999958998897
No 436
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=31.48 E-value=16 Score=15.69 Aligned_cols=23 Identities=4% Similarity=-0.031 Sum_probs=17.7
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+.+....||..+|++...+
T Consensus 33 ~~~P~~~~~~~LA~~~gl~~~~V 55 (89)
T 2ecb_A 33 SSVLTDEELNRLRAQTKLTRREI 55 (89)
T ss_dssp CSSCCHHHHHHHHHHTCCCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 69999999999999988199999
No 437
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.40 E-value=21 Score=15.03 Aligned_cols=39 Identities=13% Similarity=0.299 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCC---CCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 979999998724699999985289---8835899999997549999995
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEKGV---NRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~G~---~~ps~~~L~~iA~~l~v~~~~l 73 (144)
+|.++++..- ..|+.+. ..|+.+.+..||..+|++...+
T Consensus 15 ft~eQ~~~Le-------~~F~~n~~~~~~P~~e~~~~La~~~gl~~~~v 56 (80)
T 2da4_A 15 FSDRDLATLK-------KYWDNGMTSLGSVCREKIEAVATELNVDCEIV 56 (80)
T ss_dssp CCHHHHHHHH-------HHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHH-------HHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 9999999999-------99998277888989999999999989699999
No 438
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=31.40 E-value=18 Score=15.44 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=19.1
Q ss_pred CCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 2898835899999997549999995
Q gi|254780424|r 49 KGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 49 ~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
+....|+.+.+..||..+|++...+
T Consensus 28 ~~n~~P~~~~~~~LA~~lgl~~~qV 52 (71)
T 1wi3_A 28 DVGLYPDQEAIHTLSAQLDLPKHTI 52 (71)
T ss_dssp HHCSCCCHHHHHHHHHHSCCCHHHH
T ss_pred HHCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 8479959999999999959998996
No 439
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=31.24 E-value=19 Score=15.28 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=16.0
Q ss_pred CCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 9883589999999754999999
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISF 72 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~ 72 (144)
...|+......||..||++...
T Consensus 44 ~~yP~~~~r~~LA~~l~l~~~~ 65 (84)
T 2kt0_A 44 QKYLSLQQMQELSNILNLSYKQ 65 (84)
T ss_dssp SSSCCHHHHHHHHHHTTCCHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHH
T ss_conf 7999989999999984798757
No 440
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=31.08 E-value=21 Score=14.98 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=18.8
Q ss_pred HHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 852898835899999997549999995
Q gi|254780424|r 47 YEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 47 ~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
|+. ...|+......||..||++..-+
T Consensus 22 F~~-~~yP~~~~r~~La~~l~l~~~~V 47 (63)
T 2h1k_A 22 FLF-NKYISRPRRVELAVMLNLTERHI 47 (63)
T ss_dssp HHH-CSSCCHHHHHHHHHHHTCCHHHH
T ss_pred HHH-CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 987-79989999999999939797894
No 441
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=31.00 E-value=20 Score=15.07 Aligned_cols=25 Identities=16% Similarity=0.167 Sum_probs=16.5
Q ss_pred CCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 2898835899999997549999995
Q gi|254780424|r 49 KGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 49 ~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
.....|+.+.+..||..+|++...+
T Consensus 21 ~~~~~P~~~~~~~La~~lgl~~~qV 45 (64)
T 1x2m_A 21 AITKHPDEKRLEGLSKQLDWDVRSI 45 (64)
T ss_dssp TTCSSCCHHHHHHHHHHHCSCHHHH
T ss_pred HCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 8589929999999999949898998
No 442
>3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=30.64 E-value=24 Score=14.60 Aligned_cols=39 Identities=8% Similarity=-0.036 Sum_probs=28.6
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 819979999998724699999985289883589999999
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA 63 (144)
-.|+|-.++|+.+|||++++.+|=.++...=.+.+....
T Consensus 22 ~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~Ll~~~~~~~~ 60 (170)
T 3egq_A 22 PHEVSIEEIAREAKVSKSLIFYHFESKQKLLEEAVMHAF 60 (170)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHH
T ss_conf 240679999998489968706428999999999999999
No 443
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.63 E-value=21 Score=14.96 Aligned_cols=23 Identities=9% Similarity=-0.045 Sum_probs=18.0
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+.+....||..+|++...+
T Consensus 29 n~~P~~~~r~~LA~~lgl~~~qV 51 (80)
T 2dms_A 29 TRYPDIFMREEVALKINLPESRV 51 (80)
T ss_dssp CSSCCHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCHHHHHHHHHHCCCCHHHH
T ss_conf 69998899999999909988887
No 444
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=30.58 E-value=24 Score=14.59 Aligned_cols=23 Identities=30% Similarity=0.241 Sum_probs=20.0
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 81997999999872469999998
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
..-+|-.+||+.+|+|++++++.
T Consensus 31 ~~~~t~~ela~~l~~s~~~v~~H 53 (192)
T 1uly_A 31 NKEMTISQLSEILGKTPQTIYHH 53 (192)
T ss_dssp TCCBCHHHHHHHHTCCHHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 29967999999989198899999
No 445
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=30.53 E-value=22 Score=14.88 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=14.5
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+.+....||..+|++...+
T Consensus 24 ~~yP~~~~r~~LA~~l~l~~~~V 46 (68)
T 1ahd_P 24 NRYLTRRRRIEIAHALSLTERQI 46 (68)
T ss_dssp CSSCCTTHHHHHHHHHTCCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 89999999999999969998897
No 446
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=30.32 E-value=21 Score=14.99 Aligned_cols=21 Identities=14% Similarity=0.012 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHCCCCHHHH
Q ss_conf 835899999997549999995
Q gi|254780424|r 53 RVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 53 ~ps~~~L~~iA~~l~v~~~~l 73 (144)
-|+.+....||..+|++...+
T Consensus 34 yPs~~~~~~La~~~~l~~~qv 54 (83)
T 2dmn_A 34 YPSEEEKQMLSEKTNLSLLQI 54 (83)
T ss_dssp CCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCHHHHHHHHHHHCCCHHHH
T ss_conf 979999999999988199997
No 447
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.22 E-value=19 Score=15.19 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=19.1
Q ss_pred HHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 852898835899999997549999995
Q gi|254780424|r 47 YEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 47 ~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
|+. ...|+.+....||..||++...+
T Consensus 26 F~~-~~yP~~~~r~~LA~~l~l~~~qV 51 (70)
T 2djn_A 26 FQK-TQYLALPERAELAASLGLTQTQV 51 (70)
T ss_dssp HTT-CSSCCHHHHHHHHHHSSCCHHHH
T ss_pred HHH-CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 998-69989999999999978786674
No 448
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=30.10 E-value=13 Score=16.24 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=18.3
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 81997999999872469999998
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~ 47 (144)
...+|-.+||+.+|+|++++|+.
T Consensus 29 ~~~~~v~ela~~l~~s~~tvS~H 51 (118)
T 3f6o_A 29 RGPATVSELAKPFDMALPSFMKH 51 (118)
T ss_dssp TCCEEHHHHHTTCCSCHHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 09947999999989199999999
No 449
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.10 E-value=20 Score=15.18 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 99799999987246999999852898835899999997549999995
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
.+|.++++..- ..|+.+. .|+.+....||..+|++...+
T Consensus 14 ~~t~~Ql~~Le-------~~f~~~~-~P~~~~~~~LA~~~gl~~~~V 52 (76)
T 2dn0_A 14 KKSHEQLSALK-------GSFCRNQ-FPGQSEVEHLTKVTGLSTREV 52 (76)
T ss_dssp CCCHHHHHHHH-------HHHHHSS-SCCSHHHHHHHHHHCCCHHHH
T ss_pred CCCHHHHHHHH-------HHHHHCC-CCCHHHHHHHHHHHCCCHHHH
T ss_conf 89999999999-------9999868-999999999999949799999
No 450
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.10 E-value=21 Score=14.95 Aligned_cols=23 Identities=9% Similarity=-0.023 Sum_probs=15.8
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+......||..||++...+
T Consensus 39 ~~yP~~~~r~~LA~~lgl~~~qV 61 (80)
T 2dmt_A 39 QKYLSTPDRIDLAESLGLSQLQV 61 (80)
T ss_dssp CSSCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 69999999999999978498884
No 451
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=29.97 E-value=19 Score=15.25 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=13.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 1997999999872469999998
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~ 47 (144)
..++-.+||+.+|+|++++|+.
T Consensus 37 ~~~~v~eLa~~l~is~s~vS~H 58 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASAN 58 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 9957999999989098889999
No 452
>2d96_A Nuclear factor NF-kappa-B P100 subunit; six helix bundle, processing, proteasome, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.91 E-value=25 Score=14.52 Aligned_cols=43 Identities=21% Similarity=0.232 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 7999999872469999998528988358999999975499999950
Q gi|254780424|r 29 SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 (144)
Q Consensus 29 TQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~ 74 (144)
.=..||+++|... .+..++.+. .|+...|..... =+-++..|+
T Consensus 32 ~Wr~LA~~Lg~~~-~i~~~~~~~-sPT~~LL~~w~~-~~~tv~~L~ 74 (109)
T 2d96_A 32 SWAELAERLGLRS-LVDTYRQTT-SPSGSLLRSYEL-AGGDLAGLL 74 (109)
T ss_dssp CHHHHHHHHTCHH-HHHHHHTSS-CHHHHHHHHHHH-TTCCHHHHH
T ss_pred CHHHHHHHHCCHH-HHHHHHCCC-CCHHHHHHHHHC-CCCCHHHHH
T ss_conf 8999999928758-999987389-929999999984-899899999
No 453
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.81 E-value=25 Score=14.54 Aligned_cols=23 Identities=4% Similarity=-0.112 Sum_probs=16.9
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+.+....||..+|++...+
T Consensus 35 ~~~P~~~~~~~La~~~gL~~~~V 57 (89)
T 2dmp_A 35 SSFPTQAELDRLRVETKLSRREI 57 (89)
T ss_dssp CSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 79999999999999959899999
No 454
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=29.72 E-value=17 Score=15.58 Aligned_cols=24 Identities=8% Similarity=0.216 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 199799999987246999999852
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEK 49 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~ 49 (144)
--||.+|.|+.+|++.+++-++-+
T Consensus 15 ~~LTi~EAa~Y~gIg~~klr~L~~ 38 (70)
T 1y6u_A 15 YTLTIEEASKYFRIGENKLRRLAE 38 (70)
T ss_dssp SEEEHHHHHHHTCSCHHHHHHHHH
T ss_pred HHCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 003899999996927999999998
No 455
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=29.65 E-value=24 Score=14.61 Aligned_cols=34 Identities=18% Similarity=0.060 Sum_probs=24.0
Q ss_pred HHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999819--9799999987246999999852898
Q gi|254780424|r 19 IRLRRMILG--MSQEKLGECLGITFQQVQKYEKGVN 52 (144)
Q Consensus 19 Ir~~R~~~g--lTQ~eLA~~lGvs~s~is~~E~G~~ 52 (144)
|-.+|.... =.|...|.+-||.+.+|.+|-.-..
T Consensus 15 lDsy~~D~~c~gnqRAtArKynI~RrqvqKWL~~e~ 50 (59)
T 2glo_A 15 LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTTHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 999862021033068889981630999999999998
No 456
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua}
Probab=29.47 E-value=22 Score=14.81 Aligned_cols=34 Identities=12% Similarity=0.084 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHCC------C-CHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999819------9-799999987246999999
Q gi|254780424|r 13 INVGKRIRLRRMILG------M-SQEKLGECLGITFQQVQK 46 (144)
Q Consensus 13 ~~iG~rIr~~R~~~g------l-TQ~eLA~~lGvs~s~is~ 46 (144)
..|-..|++.=..-. | |..+||+..|||+.|+-+
T Consensus 12 ~qi~~~i~~~I~~G~~~~G~~LPsE~eLa~~~~VSr~TvR~ 52 (236)
T 3edp_A 12 EVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRR 52 (236)
T ss_dssp HHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 99999999999819999919992799999997959999999
No 457
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=29.47 E-value=17 Score=15.58 Aligned_cols=22 Identities=9% Similarity=-0.161 Sum_probs=13.7
Q ss_pred CCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 9883589999999754999999
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISF 72 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~ 72 (144)
...|+......||..+|++...
T Consensus 25 ~~yP~~~~r~~LA~~l~l~~~q 46 (68)
T 1yz8_P 25 NRYPDMSTREEIAVWTNLTEAR 46 (68)
T ss_dssp CSSCCTTTTTHHHHHTTSCHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHH
T ss_conf 6999999999999994929899
No 458
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.45 E-value=23 Score=14.69 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=18.0
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+.+.+..||..+|++...+
T Consensus 27 ~~~Ps~~~~~~La~~~~L~~~~V 49 (71)
T 2da7_A 27 NMEPNSDELLKISIAVGLPQEFV 49 (71)
T ss_dssp CSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 79959999999999988098998
No 459
>2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=29.42 E-value=7.4 Score=17.87 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9979999998724699999985289883
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNRV 54 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~p 54 (144)
++|-.++|+.+|||++++.+|=.++...
T Consensus 33 ~~Tv~~Ia~~agvs~~t~Y~yF~sKe~L 60 (195)
T 2iu5_A 33 QISVSDIMQTAKIRRQTFYNYFQNQEEL 60 (195)
T ss_dssp GCCHHHHHHHHTSCGGGGGGTCSSHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHCCCHHHH
T ss_conf 0689999998688861798877399999
No 460
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=29.31 E-value=25 Score=14.45 Aligned_cols=48 Identities=8% Similarity=0.014 Sum_probs=29.8
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCC------C--CC-CCHHHHHHHHHHCCCCHHH
Q ss_conf 81997999999872469999998528------9--88-3589999999754999999
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKG------V--NR-VGASRLQHISEVLESPISF 72 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G------~--~~-ps~~~L~~iA~~l~v~~~~ 72 (144)
....|..|+|+..+++...+++..+- . .. -..+-+.++|.-|+++.+.
T Consensus 63 ~~prtl~eia~~~~~~~k~l~k~~k~l~~~L~~~~~~~~p~~~i~r~~~~L~l~~~~ 119 (207)
T 1c9b_A 63 GVPRTFKEICAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPKQV 119 (207)
T ss_dssp TCCCCHHHHHHTSSSCHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHH
T ss_conf 898759999999788799999999999999864126787477889999870561888
No 461
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=29.25 E-value=24 Score=14.66 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=14.5
Q ss_pred CCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 8835899999997549999995
Q gi|254780424|r 52 NRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 52 ~~ps~~~L~~iA~~l~v~~~~l 73 (144)
..|+......||..+|++...+
T Consensus 36 ~yP~~~~r~~LA~~l~l~~~qV 57 (77)
T 1puf_A 36 MYLTRDRRYEVARLLNLTERQV 57 (77)
T ss_dssp SSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHH
T ss_conf 9999999999999909987886
No 462
>2l1p_A DNA-binding protein SATB1; PSI-2, NESG, structural genomics, protein structure initiati northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=28.97 E-value=26 Score=14.41 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999998199799999987246999999852898835
Q gi|254780424|r 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 (144)
Q Consensus 15 iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps 55 (144)
+-.-++++- +.|+|..||...-.++|.||.+-|+....+
T Consensus 22 VrnAlk~LL--kemnQS~LakecpLsQSmiSsIVNstyyan 60 (83)
T 2l1p_A 22 VRNALKDLL--KDMNQSSLAKECPLSQSMISSIVNSTYYAN 60 (83)
T ss_dssp HHHHHHHHH--TTSCHHHHHHHSSSCHHHHHHHHTCSSCCC
T ss_pred HHHHHHHHH--HHHHHHHHHHHCCCHHHHHHHHHCCCCEEE
T ss_conf 999999999--996188887708818999999984400020
No 463
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=28.71 E-value=23 Score=14.77 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+.+....||..+|++...+
T Consensus 25 ~~~P~~~~~~~La~~~gl~~~qV 47 (76)
T 2ecc_A 25 CQWARREDYQKLEQITGLPRPEI 47 (76)
T ss_dssp CSSCCHHHHHHHHHHTCCCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 69998999999999988599999
No 464
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=28.22 E-value=26 Score=14.33 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=35.7
Q ss_pred HHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf 9999999--8199799999987246999999852898835899999997549
Q gi|254780424|r 18 RIRLRRM--ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 (144)
Q Consensus 18 rIr~~R~--~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~ 67 (144)
-++-+.+ -.+.|-.++|+.+|||++++.+|=.++...=...+......+.
T Consensus 18 a~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~ 69 (203)
T 2np5_A 18 LFDVAAESGLEGASVREVAKRAGVSIGAVQHHFSTKDEMFAFALRTLVDKLL 69 (203)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999997290307799999997909887701069999999999999888899
No 465
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=27.58 E-value=27 Score=14.26 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHCCC
Q ss_conf 999872469999998528988-358999999975499
Q gi|254780424|r 33 LGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLES 68 (144)
Q Consensus 33 LA~~lGvs~s~is~~E~G~~~-ps~~~L~~iA~~l~v 68 (144)
|++...+....+.+ .|... .....+.+||+.+|=
T Consensus 32 L~eL~d~~~~~l~~--~g~~~~~a~~l~~~L~~~~GG 66 (129)
T 1rr7_A 32 LAELNDLLRGELSR--LGVDPAHSLEIVVAICKHLGG 66 (129)
T ss_dssp HHHHHHHHHHHHHH--TSSCTTSHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHCC
T ss_conf 99999999999998--287888999999999999699
No 466
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=27.37 E-value=25 Score=14.47 Aligned_cols=38 Identities=5% Similarity=0.011 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 9799999987246999999852898835899999997549999995
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
.|.++++..-. -|+.+ ..|+.+....||..+|++...+
T Consensus 32 ~T~eQl~~Le~-------~F~~n-~yPs~~~~~~LA~~~gLs~~qV 69 (96)
T 3nar_A 32 KTPEQLHMLKS-------AFVRT-QWPSPEEYDKLAKESGLARTDI 69 (96)
T ss_dssp SCHHHHHHHHH-------HHHHC-SSCCHHHHHHHHHHHCCCHHHH
T ss_pred CCHHHHHHHHH-------HHHHC-CCCCHHHHHHHHHHHCCCHHHH
T ss_conf 89999999999-------99986-9998999999999969899999
No 467
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=27.36 E-value=27 Score=14.24 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999819----97999999872469999998
Q gi|254780424|r 15 VGKRIRLRRMILG----MSQEKLGECLGITFQQVQKY 47 (144)
Q Consensus 15 iG~rIr~~R~~~g----lTQ~eLA~~lGvs~s~is~~ 47 (144)
+-++|..+=..+| .|-.+||..+|+++..|++.
T Consensus 15 ~e~kIl~~L~~~g~g~~~tA~~LAk~lg~~Kk~vN~~ 51 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRV 51 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 8999999999658987602999999969888888999
No 468
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.32 E-value=15 Score=15.91 Aligned_cols=20 Identities=5% Similarity=-0.024 Sum_probs=15.1
Q ss_pred HHHHHHHHHHCCCCHHHHHC
Q ss_conf 89999999754999999506
Q gi|254780424|r 56 ASRLQHISEVLESPISFFFD 75 (144)
Q Consensus 56 ~~~L~~iA~~l~v~~~~l~~ 75 (144)
-++|+.||+.|+|+++.|..
T Consensus 23 GDTL~~IA~~y~v~~~~i~~ 42 (77)
T 2djp_A 23 GDTLAGLALKYGVTMEQIKR 42 (77)
T ss_dssp TCCHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999998889999998
No 469
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=27.30 E-value=27 Score=14.23 Aligned_cols=46 Identities=2% Similarity=0.088 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC--------CCCC---CHHHHHHHHHHCCCCHH
Q ss_conf 1997999999872469999998528--------9883---58999999975499999
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKG--------VNRV---GASRLQHISEVLESPIS 71 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G--------~~~p---s~~~L~~iA~~l~v~~~ 71 (144)
...|..|+|+..+++...+++.-+- ...+ ..+-+.++|.-|+++..
T Consensus 68 ~prtl~eia~~~~~~~k~i~~~~k~i~~~l~~~~~~~~~~~~~~i~rf~~~l~l~~~ 124 (200)
T 1ais_B 68 VPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEK 124 (200)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHH
T ss_conf 996799999998402999999999999996323566889989999999856279899
No 470
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=27.25 E-value=28 Score=14.22 Aligned_cols=51 Identities=10% Similarity=0.011 Sum_probs=33.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHH------HHHHHHHHHHHCCCCCCCH---HHHHHHHHHCCCC
Q ss_conf 999999998199799999987------2469999998528988358---9999999754999
Q gi|254780424|r 17 KRIRLRRMILGMSQEKLGECL------GITFQQVQKYEKGVNRVGA---SRLQHISEVLESP 69 (144)
Q Consensus 17 ~rIr~~R~~~glTQ~eLA~~l------Gvs~s~is~~E~G~~~ps~---~~L~~iA~~l~v~ 69 (144)
..|+++. .-++|+++|+.+ +-+..++.+|++|.+.|.. .-+..+...+--+
T Consensus 21 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (482)
T 3me5_A 21 AMLEKLL--QIYDVKMLVAQLNGVGENHWSAAILKRALANDSAWHRLSEKEFAHLQTLLPKP 80 (482)
T ss_dssp HHHHHHH--TTSCHHHHHHHHHHTCSSCCCHHHHHHHHC-------CCTHHHHHHHTTSCCC
T ss_pred HHHHHHH--HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 9999999--87339999999751266666788899986278888543649999998508998
No 471
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=27.17 E-value=26 Score=14.43 Aligned_cols=21 Identities=5% Similarity=-0.021 Sum_probs=13.0
Q ss_pred CCCHHHHHHHHHHCCCCHHHH
Q ss_conf 835899999997549999995
Q gi|254780424|r 53 RVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 53 ~ps~~~L~~iA~~l~v~~~~l 73 (144)
-|+.+....||..+|++...+
T Consensus 54 YPs~~~~~~La~~~gL~~~qV 74 (87)
T 1mnm_C 54 YLDTKGLENLMKNTSLSRIQI 74 (87)
T ss_dssp CCCHHHHHHHHHHHCCCHHHH
T ss_pred CCCHHHHHHHHHHHCCCHHHH
T ss_conf 959999999999978499999
No 472
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=27.16 E-value=23 Score=14.70 Aligned_cols=23 Identities=9% Similarity=-0.010 Sum_probs=17.4
Q ss_pred CCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 98835899999997549999995
Q gi|254780424|r 51 VNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 51 ~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
...|+.+....||..+|++...+
T Consensus 29 ~~yP~~~~r~~LA~~l~l~~~qV 51 (70)
T 2cra_A 29 NKFITKDKRRKISAATSLSERQI 51 (70)
T ss_dssp CSSCCHHHHHHHHHHTCCCHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 69999999999999909998882
No 473
>3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=27.08 E-value=26 Score=14.38 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=16.7
Q ss_pred CC-CHHHHHHHHHHHHHHHHH
Q ss_conf 99-799999987246999999
Q gi|254780424|r 27 GM-SQEKLGECLGITFQQVQK 46 (144)
Q Consensus 27 gl-TQ~eLA~~lGvs~s~is~ 46 (144)
.| |..+||+..|||+.|+-+
T Consensus 28 kLPsE~~La~~~~VSR~TvR~ 48 (239)
T 3bwg_A 28 KLPVLETLMAQFEVSKSTITK 48 (239)
T ss_dssp BCCCHHHHHHHTTCCHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHH
T ss_conf 991699999998959999999
No 474
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=27.07 E-value=27 Score=14.26 Aligned_cols=43 Identities=9% Similarity=-0.021 Sum_probs=26.4
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 998199799999987246999999852898835899999997549999995
Q gi|254780424|r 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 23 R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
|..--+|..++...-. .++. ...|+.+....||..||++...+
T Consensus 22 r~Rt~ft~~Q~~~Le~-------~F~~-~~yP~~~~r~~LA~~lgl~~~~V 64 (81)
T 1b8i_A 22 RGRQTYTRYQTLELEK-------EFHT-NHYLTRRRRIEMAHALSLTERQI 64 (81)
T ss_dssp --CCCCCHHHHHHHHH-------HHHH-CSSCCHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCHHHHHHHHH-------HHHH-CCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 7986689999999999-------9987-79989999999999959898881
No 475
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=26.50 E-value=28 Score=14.14 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHH
Q ss_conf 9979999998724699999985289883589999999754999999
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~ 72 (144)
-+|..++...-. .|+.+ ..|+.+....||..||++...
T Consensus 40 ~ft~~Q~~~Le~-------~F~~~-~yp~~~~r~~LA~~l~l~~~~ 77 (97)
T 1b72_A 40 NFTTRQLTELEK-------EFHFN-KYLSRARRVEIAATLELNETQ 77 (97)
T ss_dssp CCCHHHHHHHHH-------HHTTC-SSCCHHHHHHHHHHHTCCHHH
T ss_pred CCCHHHHHHHHH-------HHHHC-CCCCHHHHHHHHHHCCCCHHH
T ss_conf 889999999999-------99986-897699999998871999657
No 476
>2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni} PDB: 3hgg_A* 3hgy_A*
Probab=26.36 E-value=4.7 Score=19.14 Aligned_cols=41 Identities=12% Similarity=-0.008 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC
Q ss_conf 19979999998724699999985289883589999999754
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l 66 (144)
.+.|-.++|+++|||++++.+|=.++...=...+...+..+
T Consensus 32 ~~~t~~~IA~~agvs~~tiY~yF~sKe~L~~~v~~~~~~~~ 72 (210)
T 2qco_A 32 QETSLSDIIKLSGGSYSNIYDGFKSKEGLFFEILDDICKKH 72 (210)
T ss_dssp TTCCHHHHHHHHCTTCTTCSSSTTSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 52879999998687840688868985899999999999999
No 477
>3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=26.18 E-value=29 Score=14.10 Aligned_cols=43 Identities=19% Similarity=0.202 Sum_probs=32.4
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
Q ss_conf 8199799999987246999999852898835899999997549
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~ 67 (144)
-.+.|-.++|+++|||++++.+|=.++...=...+......+.
T Consensus 26 ~~~~s~~~IA~~agvs~~tlY~yF~sKe~L~~av~~~~~~~~~ 68 (206)
T 3dew_A 26 FYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFACFG 68 (206)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHHHHHHHGGGG
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 2417899999996959889988818999999777899999998
No 478
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=26.17 E-value=7.3 Score=17.90 Aligned_cols=38 Identities=13% Similarity=0.044 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q ss_conf 19979999998724699999985289883589999999
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA 63 (144)
.+.|-.++|+++|||++++.+|=.++...-...+....
T Consensus 31 ~~~t~~~IA~~agvs~~tiY~~F~sK~~L~~~~~~~~~ 68 (199)
T 3on2_A 31 DGLSLRQLAREAGVSHAAPSKHFRDRQALLDALAESGF 68 (199)
T ss_dssp GGCCHHHHHHHTC-----CCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 61659999999790986786766986789999999999
No 479
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=26.04 E-value=29 Score=14.08 Aligned_cols=41 Identities=22% Similarity=0.425 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH------HHHHHHHHHCCCCCC
Q ss_conf 99999999999819979999998724------699999985289883
Q gi|254780424|r 14 NVGKRIRLRRMILGMSQEKLGECLGI------TFQQVQKYEKGVNRV 54 (144)
Q Consensus 14 ~iG~rIr~~R~~~glTQ~eLA~~lGv------s~s~is~~E~G~~~p 54 (144)
.....++..|..+|.||...+..++. +.+.++..+.-...+
T Consensus 7 ~fa~~f~~rr~~lg~tq~~~~~~~~~~~g~~~s~~~~~~~~~~~~s~ 53 (146)
T 1au7_A 7 QFANEFKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSF 53 (146)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCH
T ss_conf 99999999987168876446677650368776756677752458682
No 480
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=25.77 E-value=7.9 Score=17.70 Aligned_cols=40 Identities=8% Similarity=0.153 Sum_probs=29.3
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 8199799999987246999999852898835899999997
Q gi|254780424|r 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 (144)
Q Consensus 25 ~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144)
-.+.|-.++|+.+|||++++.+|=.++...=...+....+
T Consensus 53 ~~~~t~~~IA~~agvs~~tiY~yF~sK~~L~~~~~~~~~~ 92 (237)
T 3kkd_A 53 VRAVRHRAVAAEAQVPLSATTYYFKDIDDLITDTFALFVE 92 (237)
T ss_dssp GGGCCHHHHHHHHTSCTTTC-----CHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 2407799999998868577988769999999999999999
No 481
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=25.29 E-value=24 Score=14.60 Aligned_cols=38 Identities=8% Similarity=0.154 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 9799999987246999999852898835899999997549999995
Q gi|254780424|r 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 28 lTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
+|..++...- ..|+.. ..|+.+....||..||++..-+
T Consensus 24 ft~~Ql~~Le-------~~F~~~-~yP~~~~r~~LA~~l~l~~~~V 61 (93)
T 3a01_A 24 FTRIQVAELE-------KRFHKQ-KYLASAERAALARGLKMTDAQV 61 (93)
T ss_dssp CCHHHHHHHH-------HHHHHC-SCCCHHHHHHHHHTTTCCHHHH
T ss_pred CCHHHHHHHH-------HHHHHC-CCCCHHHHHHHHHHHCCCHHHH
T ss_conf 9999999999-------999877-9999999999999968887788
No 482
>2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A*
Probab=25.14 E-value=30 Score=13.98 Aligned_cols=70 Identities=16% Similarity=0.124 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 7668998999999999999998--199799999987246999999852898835899999997549999995
Q gi|254780424|r 4 NKKIPNPVDINVGKRIRLRRMI--LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 4 ~~~~~~~~d~~iG~rIr~~R~~--~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l 73 (144)
+.+.|.--+.-+---++-+.+. .+.|-.++|++.|||++++.+|=.++...=...+..+...+.-.+...
T Consensus 11 ~~~~~~~Re~Il~aA~~lf~~~G~~~~si~~Ia~~agvs~~tiy~yF~sK~~L~~~~~~~~~~~~~~~~~~~ 82 (213)
T 2qtq_A 11 NLETPGARDLLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKALLDRDMENIVKSVDAL 82 (213)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899868999999999999997393417899999997949999999879899999989999999999999987
No 483
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=24.68 E-value=31 Score=13.92 Aligned_cols=18 Identities=11% Similarity=0.348 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHHHHH
Q ss_conf 799999987246999999
Q gi|254780424|r 29 SQEKLGECLGITFQQVQK 46 (144)
Q Consensus 29 TQ~eLA~~lGvs~s~is~ 46 (144)
|..+||+..|||+.|+-+
T Consensus 38 sE~eLa~~~~VSR~TVR~ 55 (248)
T 3f8m_A 38 AEREIAEQFEVARETVRQ 55 (248)
T ss_dssp CHHHHHHHTTCCHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHH
T ss_conf 799999997979999999
No 484
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482}
Probab=24.46 E-value=31 Score=13.90 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=20.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 1997999999872469999998528
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKG 50 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G 50 (144)
.++|-+|||+++|++...+.+|-+.
T Consensus 49 ~~~t~~eLa~~~g~~~~~l~rlL~~ 73 (363)
T 3dp7_A 49 EGYTLQEISGRTGLTRYAAQVLLEA 73 (363)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9989999998879099999999999
No 485
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli}
Probab=23.99 E-value=3.2 Score=20.26 Aligned_cols=35 Identities=14% Similarity=0.097 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99899999999999999819979999998724699999
Q gi|254780424|r 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ 45 (144)
Q Consensus 8 ~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is 45 (144)
-|.+|.- =|+.+...--+|..++|+.+|+|.+++.
T Consensus 11 lD~~D~~---Il~~L~~d~R~s~~~IA~~lg~S~~tV~ 45 (163)
T 2gqq_A 11 LDRIDRN---ILNELQKDGRISNVELSKRVGLSPTPCL 45 (163)
T ss_dssp CCSHHHH---HHHHHHHCSSCCTTGGGTSSSCCTTTSS
T ss_pred HHHHHHH---HHHHHHHCCCCCHHHHHHHHCCCHHHHH
T ss_conf 4499999---9999998589999999999890999999
No 486
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle, DNA-binding, kinetochore, cell division, phosphoprotein, jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Probab=23.36 E-value=14 Score=16.12 Aligned_cols=37 Identities=16% Similarity=-0.005 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHC
Q ss_conf 24699999985289883589999999754999999506
Q gi|254780424|r 38 GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 (144)
Q Consensus 38 Gvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~ 75 (144)
+.+.+.|+++|+|.. |....+...+-.+.++...+..
T Consensus 12 ~~s~~~is~ie~g~~-~~~~~~~~~~~~~~v~~~~~~~ 48 (166)
T 2vpv_A 12 DPNEDIIERIESGGI-ENGEWLKHGILEANVKISDTKE 48 (166)
T ss_dssp --------------------------------------
T ss_pred CCCHHHHHHHHCCCC-CCHHHHHHHHCCCCCCCCCCCC
T ss_conf 889768579776998-9506623101014401200345
No 487
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=22.85 E-value=5 Score=19.00 Aligned_cols=39 Identities=18% Similarity=0.043 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 199799999987246999999852898835899999997
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144)
.+.|-.++|+++|||++++.+|=.++...=...+.....
T Consensus 32 ~~~t~~~IA~~agvs~~tiY~~F~sK~~L~~~~~~~~~~ 70 (217)
T 3nrg_A 32 DSVSINRITERAGIAKGSFYQYFADKKDCYLYLIQLGIE 70 (217)
T ss_dssp GGCCHHHHHHHHTCCTTGGGGTCSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 407799999985888235888648999999999999999
No 488
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=22.16 E-value=34 Score=13.61 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=16.2
Q ss_pred CCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 8835899999997549999995
Q gi|254780424|r 52 NRVGASRLQHISEVLESPISFF 73 (144)
Q Consensus 52 ~~ps~~~L~~iA~~l~v~~~~l 73 (144)
..|+.+.+..||..+|++...+
T Consensus 44 ~~p~~~~~~~la~~~gl~~~~v 65 (80)
T 1wh5_A 44 QRQDDEVIQRFCQETGVPRQVL 65 (80)
T ss_dssp CTTTHHHHHHHHHHSCCCHHHH
T ss_pred CCCCHHHHHHHHHHHCCCHHHE
T ss_conf 6989999999999978988894
No 489
>2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A
Probab=21.95 E-value=35 Score=13.59 Aligned_cols=46 Identities=9% Similarity=0.075 Sum_probs=30.7
Q ss_pred HHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 99999999--81997999999872469999998528988358999999
Q gi|254780424|r 17 KRIRLRRM--ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 (144)
Q Consensus 17 ~rIr~~R~--~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~i 62 (144)
--++-+.+ -.|.|-.++|+.+|||++++.+|=.++...=.+.+..+
T Consensus 15 aA~~l~~~~G~~~~t~~~IA~~agvs~~~lY~~F~sKe~L~~~~~~~~ 62 (192)
T 2zcm_A 15 NAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENC 62 (192)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999974926277999999889098899788799999999999999
No 490
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=21.94 E-value=35 Score=13.58 Aligned_cols=23 Identities=4% Similarity=0.163 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 19979999998724699999985
Q gi|254780424|r 26 LGMSQEKLGECLGITFQQVQKYE 48 (144)
Q Consensus 26 ~glTQ~eLA~~lGvs~s~is~~E 48 (144)
...++.++|+.+||++++++..-
T Consensus 19 ~~v~~~~iA~~l~vs~~sv~~~l 41 (214)
T 3hrs_A 19 NKITNKEIAQLMQVSPPAVTEMM 41 (214)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHH
T ss_conf 97789999998689957999999
No 491
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=21.17 E-value=36 Score=13.48 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=20.9
Q ss_pred HHHCCCCHHHHHHHH-------HHHHHHHHHHH
Q ss_conf 998199799999987-------24699999985
Q gi|254780424|r 23 RMILGMSQEKLGECL-------GITFQQVQKYE 48 (144)
Q Consensus 23 R~~~glTQ~eLA~~l-------Gvs~s~is~~E 48 (144)
--..|.|..|.|+.+ ++|.+||.+|-
T Consensus 18 ~~~~g~~~~e~~~~l~~~~~~~~is~~TV~rw~ 50 (345)
T 3hot_A 18 CFHLKKTAAESHRMLVEAFGEQVPTVKTCERWF 50 (345)
T ss_dssp HHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 998599999999999987467888788999999
No 492
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=20.92 E-value=36 Score=13.45 Aligned_cols=56 Identities=9% Similarity=0.081 Sum_probs=34.5
Q ss_pred CHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 9899999999999999--8199799999987246999999852898835899999997
Q gi|254780424|r 9 NPVDINVGKRIRLRRM--ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 (144)
Q Consensus 9 ~~~d~~iG~rIr~~R~--~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~ 64 (144)
+.-+.-+---++-++. -.|+|-.++|+.+|||++++.+|=.++...=...+.....
T Consensus 10 ~tr~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~ 67 (191)
T 3on4_A 10 NTKERILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYHFPSKEDLGVAVISWHTD 67 (191)
T ss_dssp CHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999999997395637799999987829446876069899999988999999
No 493
>3h6p_A ESAT-6 like protein ESXS; four-helix bundle, structural genomics, PSI-2, protein structure initiative; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_A
Probab=20.68 E-value=35 Score=13.52 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 899899999999999999819979999998724699999985289
Q gi|254780424|r 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 (144)
Q Consensus 7 ~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~ 51 (144)
+--++|.||.+-+ -+|..++.+.|+-+++|++-|..-
T Consensus 14 ~MSlLDahipqlv--------as~~aF~aka~lMRsti~qAEq~A 50 (111)
T 3h6p_A 14 KMSLLDAHIPQLI--------ASHTAFAAKAGLMRHTIGQAEQQA 50 (111)
T ss_dssp -------------------------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3467861108999--------876656678999999998999988
No 494
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural genomics, midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=20.12 E-value=38 Score=13.34 Aligned_cols=113 Identities=8% Similarity=-0.034 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHC-CHHHHHHHH
Q ss_conf 9979999998724699999985289883589999999754999999506774431111101454211203-867899999
Q gi|254780424|r 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFIS-TPDGLQLNR 105 (144)
Q Consensus 27 glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~l~~ 105 (144)
+.|-.++|++.|||++++.+|=.++...=...+......+.-.+.......................... .+.......
T Consensus 36 ~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 115 (211)
T 3him_A 36 ATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITAADFPDIAAPDRLMSTVTAYVTWHADNRASARVGQ 115 (211)
T ss_dssp TCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 17799999997908978844349999999999998877999999975210123099999999999999985779999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9872899999999999999999999997539998
Q gi|254780424|r 106 YFIQIDDVKVRQKIIELVRSIVSSEKKYRTIEEE 139 (144)
Q Consensus 106 ~~~~l~~~~~r~~i~~l~~~l~~~e~~~~~~~ee 139 (144)
......++..+.........+...-.........
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (211)
T 3him_A 116 YELRSLSPEHFAIIADIRRSTTKVFTRIIEAGAT 149 (211)
T ss_dssp HCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9987568888999999999999999999999988
Done!