HHSEARCH alignment of GI: 254780424 and SCOP domain: d1k78a1

Alignment

Probab=92.46  E-value=0.097  Score=28.41  Aligned_cols=41  Identities=22%  Similarity=0.139  Sum_probs=33.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             68998999999999999998199799999987246999999852
Q gi|254780424|r    6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK   49 (144)
Q Consensus         6 ~~~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~   49 (144)
                      ..|-++|  +=+||=++= +.|+|..++|++++||.+++++|-+
T Consensus        12 GrPls~D--LR~Riv~~~-~~G~s~r~aA~rf~VS~s~v~k~l~   52 (63)
T d1k78a1          12 GRPLPDV--VRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILG   52 (63)
T ss_dssp             TSCCCHH--HHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred             CCCCCHH--HHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             9859999--999999999-9599899999995977999999999

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Pax-5
species: Human (Homo sapiens) [TaxId: 9606]