HHSEARCH alignment of GI: 254780424 and SCOP domain: d1nera_

Alignment

Probab=94.57  E-value=0.026  Score=32.06  Aligned_cols=56  Identities=13%  Similarity=0.023  Sum_probs=44.5

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHCC
Q ss_conf             99999998199799999987246999999852898835899999997549999995067
Q gi|254780424|r   18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV   76 (144)
Q Consensus        18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~~   76 (144)
                      -|+..=..+|+|..+|+...|++.+++.+.-..   |...-=..||++||+++..++..
T Consensus        13 dI~AaL~krG~sLa~lsr~~gls~stl~naL~r---p~pKgEriIA~aLg~~P~eIWPs   68 (74)
T d1nera_          13 DVIAGLKKRKLSLSALSRQFGYAPTTLANALER---HWPKGEQIIANALETKPEVIWPS   68 (74)
T ss_dssp             HHHHHHTTSSCCHHHHHHHHSCCHHHHHHTTTS---SCHHHHHHHHHHTTSCHHHHSTT
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCC---CCHHHHHHHHHHHCCCHHHHCCC
T ss_conf             999999996887999999909987899999837---78589999999978598895944

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: Phage repressors
domain: Ner
species: Bacteriophage mu [TaxId: 10677]