HHSEARCH alignment of GI: 254780424 and SCOP domain: d1r71a_

Alignment

Probab=94.90  E-value=0.02  Score=32.76  Aligned_cols=45  Identities=9%  Similarity=0.070  Sum_probs=35.5

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             998999999999999998199799999987246999999852898835
Q gi|254780424|r    8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG   55 (144)
Q Consensus         8 ~~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps   55 (144)
                      -+|+|  .+.-++.+- ..|+|++++|+++|+|.++|+++-.=...|.
T Consensus        14 L~p~e--~A~a~~~l~-~~g~s~~eiA~~~G~s~~~V~~~l~L~~lp~   58 (114)
T d1r71a_          14 LTPRE--IADFIGREL-AKGKKKGDIAKEIGKSPAFITQHVTLLDLPE   58 (114)
T ss_dssp             CCHHH--HHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHGGGSCCH
T ss_pred             CCHHH--HHHHHHHHH-HHCCCHHHHHHHHCCCHHHHHHHHHHHCCCH
T ss_conf             99999--999999998-8099899999997772999999999967999

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: KorB DNA-binding domain-like
family: KorB DNA-binding domain-like
domain: Transcriptional repressor protein KorB DNA-binding domain
species: Escherichia coli [TaxId: 562]