HHSEARCH alignment of GI: 254780424 and SCOP domain: d1s4ka_

Alignment

Probab=93.37  E-value=0.089  Score=28.66  Aligned_cols=48  Identities=17%  Similarity=0.203  Sum_probs=41.4

Q ss_pred             HHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             9999999981997999999872--46999999852898835899999997
Q gi|254780424|r   17 KRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISE   64 (144)
Q Consensus        17 ~rIr~~R~~~glTQ~eLA~~lG--vs~s~is~~E~G~~~ps~~~L~~iA~   64 (144)
                      --|..+|+..-||-+|-|.-++  ++..+.++||+|...+..+.+..+..
T Consensus         6 ~ELQalR~if~mti~EaA~~I~~~~~s~tWQqWE~Gd~~IP~~Vi~~l~~   55 (120)
T d1s4ka_           6 LELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPISPEIIARLKE   55 (120)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHTSSSCCHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHH
T ss_conf             99999999999759999999965766899999874898998999999999

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: YdiL-like
domain: Putative cytoplasmic protein YdiL
species: Salmonella typhimurium [TaxId: 90371]