HHSEARCH alignment of GI: 254780424 and SCOP domain: d1vz0a1

Alignment

Probab=94.86  E-value=0.021  Score=32.67  Aligned_cols=40  Identities=18%  Similarity=0.262  Sum_probs=31.9

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9899999999999999819979999998724699999985289
Q gi|254780424|r    9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV   51 (144)
Q Consensus         9 ~~~d~~iG~rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~   51 (144)
                      |||+.  +.-.+.+- +.|+||+++|+++|.|+++|++.-+=.
T Consensus         4 ~piEe--A~a~~~L~-e~g~t~~~iA~~~Gks~~~V~~~LrLl   43 (93)
T d1vz0a1           4 SPVEE--ARGYQALL-EMGLTQEEVARRVGKARSTVANALRLL   43 (93)
T ss_dssp             CHHHH--HHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHGG
T ss_pred             CHHHH--HHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             89999--99999999-849999999999851469999999899

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: KorB DNA-binding domain-like
family: KorB DNA-binding domain-like
domain: Putative partitioning protein ParB/Spo0J
species: Thermus thermophilus [TaxId: 274]