HHSEARCH alignment of GI: 254780424 and SCOP domain: d2ppxa1

Alignment

Probab=99.10  E-value=4.9e-11  Score=87.96  Aligned_cols=57  Identities=16%  Similarity=0.233  Sum_probs=50.0

Q ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHC
Q ss_conf             9999999819979999998724699999985289883589999999754999999506
Q gi|254780424|r   18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD   75 (144)
Q Consensus        18 rIr~~R~~~glTQ~eLA~~lGvs~s~is~~E~G~~~ps~~~L~~iA~~l~v~~~~l~~   75 (144)
                      +||.+|+.+||||++||+.+|||.++|++||+|++.|+...+..++ .+...|+.++.
T Consensus         3 ~ik~~R~~~gltQ~elA~~lGvs~~tvs~~E~G~~~P~~~~~~ll~-~l~~~Pe~v~~   59 (62)
T d2ppxa1           3 RIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYLK-IIAVDPEGTAA   59 (62)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCCHHHHHHHH-HHHHCHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHH-HHHCCHHHHHH
T ss_conf             8899999969999999999698999999887798899999999999-98669999999

SCOP domain information

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: SinR domain-like
domain: Uncharacterized protein Atu1735
species: Agrobacterium tumefaciens [TaxId: 358]