BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780424|ref|YP_003064837.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] (144 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254780424|ref|YP_003064837.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040101|gb|ACT56897.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 144 Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 144/144 (100%), Positives = 144/144 (100%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ Sbjct: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII Sbjct: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 Query: 121 ELVRSIVSSEKKYRTIEEECMVEQ 144 ELVRSIVSSEKKYRTIEEECMVEQ Sbjct: 121 ELVRSIVSSEKKYRTIEEECMVEQ 144 >gi|315122130|ref|YP_004062619.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495532|gb|ADR52131.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 145 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 108/141 (76%), Positives = 120/141 (85%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+GNKK PNPVDINVGKRIRLRR ILGMSQEKLG+ LGITFQQVQKYEKGVNRVGASRLQ Sbjct: 1 MIGNKKTPNPVDINVGKRIRLRRTILGMSQEKLGDSLGITFQQVQKYEKGVNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +IS L+ PISFFFD P VCS SEENN+MDF+S+ DGLQLNR+F QI DVKVRQKII Sbjct: 61 NISRALDIPISFFFDDPPEVCSGALSEENNIMDFLSSSDGLQLNRHFTQIKDVKVRQKII 120 Query: 121 ELVRSIVSSEKKYRTIEEECM 141 +LV+SIVS EK +EEE + Sbjct: 121 DLVKSIVSLEKSTIALEEEDV 141 >gi|227820634|ref|YP_002824604.1| putative transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339633|gb|ACP23851.1| putative transcriptional regulator [Sinorhizobium fredii NGR234] Length = 136 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 80/136 (58%), Positives = 105/136 (77%), Gaps = 3/136 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MVENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEE---NNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 +IS +L P+SFFF+ +P +E N V+DF+S+ +GLQLNR F++I D KVR+ Sbjct: 61 NISSILNVPVSFFFEDAPGEAGSGMAEAPSSNYVVDFLSSSEGLQLNRAFVKISDPKVRR 120 Query: 118 KIIELVRSIVSSEKKY 133 K+++LV+++ + + Sbjct: 121 KLVDLVKALAAEAESE 136 >gi|163757744|ref|ZP_02164833.1| dna-binding protein [Hoeflea phototrophica DFL-43] gi|162285246|gb|EDQ35528.1| dna-binding protein [Hoeflea phototrophica DFL-43] Length = 139 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 80/137 (58%), Positives = 106/137 (77%), Gaps = 6/137 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGEALGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCS------DISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +P + ++ N V+DF+S+ +GLQLNR FI+I D K Sbjct: 61 NISTILNVPVSFFFEDAPGDPATGQPGMAEANSSNYVVDFLSSSEGLQLNRAFIKIPDPK 120 Query: 115 VRQKIIELVRSIVSSEK 131 VR+++++LV+S+ S + Sbjct: 121 VRRRLVDLVKSLASDPE 137 >gi|159184276|ref|NP_353393.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139603|gb|AAK86178.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 139 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 79/135 (58%), Positives = 104/135 (77%), Gaps = 6/135 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSP------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +P T +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISGILNVPVSFFFEDAPGDQVGGTSGMAEASSSNYVVDFLSSAEGLQLNRAFVKIADPK 120 Query: 115 VRQKIIELVRSIVSS 129 VR+++++LV+++ + Sbjct: 121 VRRRLVDLVKALAAE 135 >gi|116250159|ref|YP_765997.1| HTH-type transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254807|emb|CAK05881.1| putative HTH-type transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 138 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 81/134 (60%), Positives = 105/134 (78%), Gaps = 5/134 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 +IS +L P+SFFF+ +P S +S N V+DF+S+ +GLQLNR F++I D KV Sbjct: 61 NISNILNVPVSFFFEDAPGEHSSAGGGMEASSSNYVVDFLSSSEGLQLNRAFVKISDPKV 120 Query: 116 RQKIIELVRSIVSS 129 R+K++ELV+++ + Sbjct: 121 RRKVVELVKALAAE 134 >gi|241202771|ref|YP_002973867.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856661|gb|ACS54328.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 138 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 81/134 (60%), Positives = 106/134 (79%), Gaps = 5/134 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 +IS +L P+SFFF+ +P S+ +S N V+DF+S+ +GLQLNR F++I D KV Sbjct: 61 NISNILNVPVSFFFEDAPGEHSNAGGGMETSSSNYVVDFLSSSEGLQLNRAFVKISDPKV 120 Query: 116 RQKIIELVRSIVSS 129 R+K++ELV+++ + Sbjct: 121 RRKVVELVKALAAE 134 >gi|222147356|ref|YP_002548313.1| transcriptional regulator [Agrobacterium vitis S4] gi|221734346|gb|ACM35309.1| transcriptional regulator [Agrobacterium vitis S4] Length = 140 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 78/136 (57%), Positives = 105/136 (77%), Gaps = 7/136 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MLENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSP-------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 +IS +L P+SFFF+ +P ++ N V+DF+S+ +GLQLNR F++I+D Sbjct: 61 NISSILNVPVSFFFEDAPGEQVVAGANGFSEAASSNYVVDFLSSSEGLQLNRAFVKINDP 120 Query: 114 KVRQKIIELVRSIVSS 129 KVR+K+++LV+++ + Sbjct: 121 KVRRKVVDLVKALAAD 136 >gi|153008089|ref|YP_001369304.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151559977|gb|ABS13475.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 135 Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 76/133 (57%), Positives = 101/133 (75%), Gaps = 4/133 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+D++VG RIRLRR +LG+SQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDVHVGSRIRLRRNMLGLSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 IS +L P+SFFF+ +P + +E V+DF+++ +G+QL R F +I D KVR Sbjct: 61 AISAILNVPVSFFFEDAPGSSNQAGFAEDNEATYVVDFLNSNEGVQLTRAFTKISDPKVR 120 Query: 117 QKIIELVRSIVSS 129 +KII+LV+S+ + Sbjct: 121 RKIIDLVKSLAAD 133 >gi|90420537|ref|ZP_01228444.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90335265|gb|EAS49018.1| transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 139 Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 82/134 (61%), Positives = 105/134 (78%), Gaps = 5/134 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV NKK PNPVDI+VG R+RLRR +LGMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQ Sbjct: 1 MVDNKKKPNPVDIHVGSRVRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 ISEV+ P+SFFF+ +PT + S + V+DF+S+ +GLQLNR F++I D KV Sbjct: 61 RISEVMTVPVSFFFEDAPTGMTGSESLQEPSSPDYVVDFLSSSEGLQLNRAFVRISDPKV 120 Query: 116 RQKIIELVRSIVSS 129 R+++I+LVR++ S Sbjct: 121 RRRVIDLVRTLADS 134 >gi|239833207|ref|ZP_04681536.1| DNA-binding-domin protein [Ochrobactrum intermedium LMG 3301] gi|239825474|gb|EEQ97042.1| DNA-binding-domin protein [Ochrobactrum intermedium LMG 3301] Length = 135 Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 76/133 (57%), Positives = 101/133 (75%), Gaps = 4/133 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+D++VG RIRLRR +LG+SQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDVHVGSRIRLRRNMLGLSQEKLGENLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 IS +L P+SFFF+ +P + +E V+DF+++ +G+QL R F +I D KVR Sbjct: 61 AISAILNVPVSFFFEDAPGSSNQAGFAEDNEATYVVDFLNSNEGVQLTRAFTKISDPKVR 120 Query: 117 QKIIELVRSIVSS 129 +KII+LV+S+ + Sbjct: 121 RKIIDLVKSLAAD 133 >gi|190890041|ref|YP_001976583.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|218510206|ref|ZP_03508084.1| probable transcriptional regulator protein [Rhizobium etli Brasil 5] gi|218670147|ref|ZP_03519818.1| probable transcriptional regulator protein [Rhizobium etli GR56] gi|190695320|gb|ACE89405.1| probable transcriptional regulator protein [Rhizobium etli CIAT 652] gi|327188600|gb|EGE55810.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 139 Score = 129 bits (325), Expect = 8e-29, Method: Composition-based stats. Identities = 81/135 (60%), Positives = 105/135 (77%), Gaps = 6/135 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +P S +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISSILNVPVSFFFEDAPGEHSGAIGGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPK 120 Query: 115 VRQKIIELVRSIVSS 129 VR+K++ELV+++ + Sbjct: 121 VRRKVVELVKALAAE 135 >gi|325291795|ref|YP_004277659.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325059648|gb|ADY63339.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 140 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 80/135 (59%), Positives = 104/135 (77%), Gaps = 6/135 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 2 MTENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 61 Query: 61 HISEVLESPISFFFDVSP------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +P T +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 62 NISAILNVPVSFFFEDAPGDQAVGTTGMAEASSSNYVVDFLSSAEGLQLNRAFVKIADPK 121 Query: 115 VRQKIIELVRSIVSS 129 VR+++++LV+S+ + Sbjct: 122 VRRRLVDLVKSLAAE 136 >gi|222084698|ref|YP_002543227.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722146|gb|ACM25302.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 139 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 80/135 (59%), Positives = 104/135 (77%), Gaps = 6/135 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSP------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +P +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISSILNVPVSFFFEDAPGDHTTTAGGLAEASSSNYVVDFLSSSEGLQLNRAFVKISDGK 120 Query: 115 VRQKIIELVRSIVSS 129 VR+K++ELV+++ + Sbjct: 121 VRRKVVELVKALAAE 135 >gi|254470793|ref|ZP_05084196.1| dna-binding protein [Pseudovibrio sp. JE062] gi|211959935|gb|EEA95132.1| dna-binding protein [Pseudovibrio sp. JE062] Length = 135 Score = 128 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 74/135 (54%), Positives = 103/135 (76%), Gaps = 5/135 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +KK PNP+D++VG R+RLRRM+LGMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQH Sbjct: 1 MPSKKAPNPIDVHVGSRVRLRRMMLGMSQEKLGESLGITFQQIQKYEKGTNRIGASRLQH 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVM-----DFISTPDGLQLNRYFIQIDDVKVR 116 I+ +L+ P++FFF+ +P + +N DF+S+ DGL LN+ F++I++ KVR Sbjct: 61 IATILKVPVAFFFEDAPGTPDETPGVGDNPQTTYVVDFLSSSDGLALNKAFVRIENPKVR 120 Query: 117 QKIIELVRSIVSSEK 131 +K++ELV+SI E Sbjct: 121 KKVVELVKSIAGDED 135 >gi|110636247|ref|YP_676455.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110287231|gb|ABG65290.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 140 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 71/133 (53%), Positives = 99/133 (74%), Gaps = 5/133 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +KK PNP+D++VG RIRLRR +LG+SQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 3 TNDKKRPNPIDVHVGSRIRLRRNMLGISQEKLGESLGITFQQIQKYEKGTNRVGASRLQA 62 Query: 62 ISEVLESPISFFFDVSPTVCSD-----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 I+ +L +P+SFFF+ +P D V DF+S+ +G+QLNR F++I D KVR Sbjct: 63 IASILNAPVSFFFEGAPNEDGDPVAGLAEEGTPYVGDFLSSSEGIQLNRAFVRITDPKVR 122 Query: 117 QKIIELVRSIVSS 129 +++++LV+++ + Sbjct: 123 RRVLDLVKALATD 135 >gi|307942740|ref|ZP_07658085.1| transcriptional regulator protein [Roseibium sp. TrichSKD4] gi|307773536|gb|EFO32752.1| transcriptional regulator protein [Roseibium sp. TrichSKD4] Length = 135 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 74/134 (55%), Positives = 105/134 (78%), Gaps = 5/134 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +KK PNP+D++VG R+RLRRM+LGMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQH Sbjct: 1 MPSKKAPNPIDVHVGSRVRLRRMMLGMSQEKLGESLGITFQQIQKYEKGTNRIGASRLQH 60 Query: 62 ISEVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 I+ +L+ P++FFF+ +P + + + V+DF+S+ +GL LN+ F++IDD KVR Sbjct: 61 IATILKVPVAFFFEDAPGTPEEAEGFGEAQPTSYVVDFLSSSEGLSLNKAFVRIDDPKVR 120 Query: 117 QKIIELVRSIVSSE 130 ++I++LVRS+ E Sbjct: 121 RRIVDLVRSLAGDE 134 >gi|209547626|ref|YP_002279543.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533382|gb|ACI53317.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 139 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 79/139 (56%), Positives = 102/139 (73%), Gaps = 6/139 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDV------SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISNILNVPVSFFFEDAPGEHAGAGGGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPK 120 Query: 115 VRQKIIELVRSIVSSEKKY 133 VR+K++ELV+++ + Sbjct: 121 VRRKVVELVKALAAEADSD 139 >gi|86356028|ref|YP_467920.1| transcriptional regulator protein [Rhizobium etli CFN 42] gi|86280130|gb|ABC89193.1| probable transcriptional regulator protein [Rhizobium etli CFN 42] Length = 139 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 79/135 (58%), Positives = 102/135 (75%), Gaps = 6/135 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDV------SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS +L P+SFFF+ +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISSILNVPVSFFFEDAPGEHAGAAGGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPK 120 Query: 115 VRQKIIELVRSIVSS 129 VR+K++ELV+++ + Sbjct: 121 VRRKVVELVKALAAE 135 >gi|17988254|ref|NP_540888.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|23503007|ref|NP_699134.1| Cro/CI family transcriptional regulator [Brucella suis 1330] gi|62290996|ref|YP_222789.1| Cro/CI family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|82700905|ref|YP_415479.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|148558969|ref|YP_001259953.1| Cro/CI family transcriptional regulator [Brucella ovis ATCC 25840] gi|161620067|ref|YP_001593954.1| hypothetical protein BCAN_A2201 [Brucella canis ATCC 23365] gi|163844172|ref|YP_001628577.1| hypothetical protein BSUIS_A1996 [Brucella suis ATCC 23445] gi|189025208|ref|YP_001935976.1| Helix-turn-helix motif [Brucella abortus S19] gi|225626524|ref|ZP_03784563.1| DNA-binding domain protein [Brucella ceti str. Cudo] gi|225853584|ref|YP_002733817.1| XRE family transcriptional regulator [Brucella melitensis ATCC 23457] gi|237816498|ref|ZP_04595491.1| DNA-binding protein [Brucella abortus str. 2308 A] gi|254690290|ref|ZP_05153544.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 6 str. 870] gi|254694778|ref|ZP_05156606.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 3 str. Tulya] gi|254696406|ref|ZP_05158234.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254700788|ref|ZP_05162616.1| transcriptional regulator, XRE family protein [Brucella suis bv. 5 str. 513] gi|254705157|ref|ZP_05166985.1| transcriptional regulator, XRE family protein [Brucella suis bv. 3 str. 686] gi|254707325|ref|ZP_05169153.1| transcriptional regulator, XRE family protein [Brucella pinnipedialis M163/99/10] gi|254709133|ref|ZP_05170944.1| transcriptional regulator, XRE family protein [Brucella pinnipedialis B2/94] gi|254713442|ref|ZP_05175253.1| transcriptional regulator, XRE family protein [Brucella ceti M644/93/1] gi|254716202|ref|ZP_05178013.1| transcriptional regulator, XRE family protein [Brucella ceti M13/05/1] gi|254718196|ref|ZP_05180007.1| transcriptional regulator, XRE family protein [Brucella sp. 83/13] gi|254731319|ref|ZP_05189897.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 4 str. 292] gi|256030658|ref|ZP_05444272.1| transcriptional regulator, XRE family protein [Brucella pinnipedialis M292/94/1] gi|256045762|ref|ZP_05448640.1| transcriptional regulator, XRE family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060119|ref|ZP_05450301.1| transcriptional regulator, XRE family protein [Brucella neotomae 5K33] gi|256112481|ref|ZP_05453402.1| transcriptional regulator, XRE family protein [Brucella melitensis bv. 3 str. Ether] gi|256158660|ref|ZP_05456543.1| transcriptional regulator, XRE family protein [Brucella ceti M490/95/1] gi|256254064|ref|ZP_05459600.1| transcriptional regulator, XRE family protein [Brucella ceti B1/94] gi|256258543|ref|ZP_05464079.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 9 str. C68] gi|256262932|ref|ZP_05465464.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|256370554|ref|YP_003108065.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|260169562|ref|ZP_05756373.1| transcriptional regulator, Cro/CI family protein [Brucella sp. F5/99] gi|260546259|ref|ZP_05821999.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260563058|ref|ZP_05833544.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260567374|ref|ZP_05837844.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|260755830|ref|ZP_05868178.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759053|ref|ZP_05871401.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760778|ref|ZP_05873121.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884855|ref|ZP_05896469.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261215105|ref|ZP_05929386.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261217976|ref|ZP_05932257.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261221205|ref|ZP_05935486.1| transcriptional regulator [Brucella ceti B1/94] gi|261314807|ref|ZP_05954004.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261316633|ref|ZP_05955830.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261321174|ref|ZP_05960371.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261324096|ref|ZP_05963293.1| transcriptional regulator [Brucella neotomae 5K33] gi|261751297|ref|ZP_05995006.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261755862|ref|ZP_05999571.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|261759090|ref|ZP_06002799.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|265983154|ref|ZP_06095889.1| transcriptional regulator [Brucella sp. 83/13] gi|265987705|ref|ZP_06100262.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265992179|ref|ZP_06104736.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993917|ref|ZP_06106474.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|265997166|ref|ZP_06109723.1| transcriptional regulator [Brucella ceti M490/95/1] gi|294851383|ref|ZP_06792056.1| HTH-type transcriptional regulator [Brucella sp. NVSL 07-0026] gi|297247382|ref|ZP_06931100.1| HTH-type transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|306837710|ref|ZP_07470579.1| transcriptional regulator protein [Brucella sp. NF 2653] gi|306842733|ref|ZP_07475375.1| transcriptional regulator protein [Brucella sp. BO2] gi|306843576|ref|ZP_07476177.1| transcriptional regulator protein [Brucella sp. BO1] gi|17984022|gb|AAL53152.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|23349047|gb|AAN31049.1| transcriptional regulator, Cro/CI family [Brucella suis 1330] gi|62197128|gb|AAX75428.1| transcriptional regulator, Cro/CI family [Brucella abortus bv. 1 str. 9-941] gi|82617006|emb|CAJ12115.1| Helix-turn-helix motif [Brucella melitensis biovar Abortus 2308] gi|148370226|gb|ABQ60205.1| transcriptional regulator, Cro/CI family [Brucella ovis ATCC 25840] gi|161336878|gb|ABX63183.1| hypothetical protein BCAN_A2201 [Brucella canis ATCC 23365] gi|163674895|gb|ABY39006.1| hypothetical protein BSUIS_A1996 [Brucella suis ATCC 23445] gi|189020780|gb|ACD73502.1| Helix-turn-helix motif [Brucella abortus S19] gi|225618181|gb|EEH15224.1| DNA-binding domain protein [Brucella ceti str. Cudo] gi|225641949|gb|ACO01863.1| transcriptional regulator, XRE family protein [Brucella melitensis ATCC 23457] gi|237788565|gb|EEP62780.1| DNA-binding protein [Brucella abortus str. 2308 A] gi|256000717|gb|ACU49116.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|260096366|gb|EEW80242.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260153074|gb|EEW88166.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260156892|gb|EEW91972.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|260669371|gb|EEX56311.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671210|gb|EEX58031.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675938|gb|EEX62759.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874383|gb|EEX81452.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260916712|gb|EEX83573.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260919789|gb|EEX86442.1| transcriptional regulator [Brucella ceti B1/94] gi|260923065|gb|EEX89633.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261293864|gb|EEX97360.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261295856|gb|EEX99352.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261300076|gb|EEY03573.1| transcriptional regulator [Brucella neotomae 5K33] gi|261303833|gb|EEY07330.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261739074|gb|EEY27070.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|261741050|gb|EEY28976.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261745615|gb|EEY33541.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|262551634|gb|EEZ07624.1| transcriptional regulator [Brucella ceti M490/95/1] gi|262764898|gb|EEZ10819.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263003245|gb|EEZ15538.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263092806|gb|EEZ16981.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|264659902|gb|EEZ30163.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264661746|gb|EEZ32007.1| transcriptional regulator [Brucella sp. 83/13] gi|294819972|gb|EFG36971.1| HTH-type transcriptional regulator [Brucella sp. NVSL 07-0026] gi|297174551|gb|EFH33898.1| HTH-type transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|306276267|gb|EFM57967.1| transcriptional regulator protein [Brucella sp. BO1] gi|306287077|gb|EFM58582.1| transcriptional regulator protein [Brucella sp. BO2] gi|306407268|gb|EFM63478.1| transcriptional regulator protein [Brucella sp. NF 2653] gi|326410157|gb|ADZ67222.1| Helix-turn-helix motif protein [Brucella melitensis M28] gi|326539875|gb|ADZ88090.1| transcriptional regulator, XRE family protein [Brucella melitensis M5-90] Length = 137 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 77/137 (56%), Positives = 102/137 (74%), Gaps = 6/137 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+D++VG RIRLRR +LG+SQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDMHVGSRIRLRRNMLGLSQEKLGENLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCS------DISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 IS +L P+SFFF+ +P S +E V+DF+++ +G+QL R F +I D K Sbjct: 61 AISSILNVPVSFFFEDAPGSGSSGGDGFAEDNEATYVVDFLNSNEGVQLTRAFTKISDPK 120 Query: 115 VRQKIIELVRSIVSSEK 131 VR+KII+LV+S+ + + Sbjct: 121 VRRKIIDLVKSLAADAE 137 >gi|15964163|ref|NP_384516.1| DNA-binding protein [Sinorhizobium meliloti 1021] gi|150395273|ref|YP_001325740.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|307301308|ref|ZP_07581070.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307317979|ref|ZP_07597416.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|160358932|sp|A6U5H5|Y045_SINMW RecName: Full=Uncharacterized HTH-type transcriptional regulator Smed_0045 gi|160358955|sp|P0C5S2|Y410_RHIME RecName: Full=Uncharacterized HTH-type transcriptional regulator R00410 gi|2564960|gb|AAB81868.1| DNA-binding protein [Sinorhizobium medicae WSM419] gi|15073339|emb|CAC41847.1| Transcription regulator [Sinorhizobium meliloti 1021] gi|150026788|gb|ABR58905.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] gi|306896381|gb|EFN27130.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306903764|gb|EFN34351.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 139 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 79/139 (56%), Positives = 106/139 (76%), Gaps = 6/139 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MIENKKKPNPIDIHVGSRIRLRRTMLGMSQEKLGESLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCS------DISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +IS++L P+SFFF+ +P +S N V+DF+S+ +GLQLNR F++I D K Sbjct: 61 NISQILNVPVSFFFEDAPGDGGGTGPGMAEASSSNYVVDFLSSSEGLQLNRAFVKISDPK 120 Query: 115 VRQKIIELVRSIVSSEKKY 133 VR+K+++LV+++ + + Sbjct: 121 VRRKLVDLVKALAAEAESE 139 >gi|304393079|ref|ZP_07375008.1| transcriptional regulator [Ahrensia sp. R2A130] gi|303294844|gb|EFL89215.1| transcriptional regulator [Ahrensia sp. R2A130] Length = 150 Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats. Identities = 68/134 (50%), Positives = 98/134 (73%), Gaps = 6/134 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK PNP+DI+VG R+RLRR + GMSQEKLG+ LGITFQQ+QKYEKG NR+GASR+Q Sbjct: 1 MAEKKTPNPIDIHVGSRVRLRRTMQGMSQEKLGDALGITFQQIQKYEKGTNRIGASRMQQ 60 Query: 62 ISEVLESPISFFFDVSPTVCSDIS------SEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 IS L+ P++FFF+ +P + + S V+DF+S+P+G+QLNR F++I + Sbjct: 61 ISSALDVPVAFFFEDAPADVINNATGMHETSATTYVVDFLSSPEGIQLNRAFVRITSPAI 120 Query: 116 RQKIIELVRSIVSS 129 R+++IE+VR++ Sbjct: 121 RRRVIEMVRTLADE 134 >gi|319779776|ref|YP_004139252.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165664|gb|ADV09202.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 139 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 75/137 (54%), Positives = 99/137 (72%), Gaps = 7/137 (5%) Query: 1 MVG-NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRL Sbjct: 1 MTEDNKKKPNPIDIHVGSRIRLRRNMLGMSQEKLGENLGITFQQIQKYEKGTNRVGASRL 60 Query: 60 QHISEVLESPISFFFDVSPTVCS------DISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 Q I+ +L P++FFF+ +P + ++F +P+GLQLNR F++I D Sbjct: 61 QAIASILGVPVAFFFEDAPGQEPVAGRGFAEDASMAFAVEFCGSPEGLQLNRAFVKIADA 120 Query: 114 KVRQKIIELVRSIVSSE 130 KVR++II+LV+S+ + + Sbjct: 121 KVRRRIIDLVKSLSADD 137 >gi|49473876|ref|YP_031918.1| transcriptional regulator [Bartonella quintana str. Toulouse] gi|49239379|emb|CAF25712.1| Transcriptional regulator [Bartonella quintana str. Toulouse] Length = 137 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 71/132 (53%), Positives = 96/132 (72%), Gaps = 2/132 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NR+GASRLQ Sbjct: 1 MTETKKNPDPIDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD + + +N+ MDF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGIDSQHVEGFAESDNSFMDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSIVSSE 130 II+L +++ + Sbjct: 121 IIDLAKALSEED 132 >gi|260461987|ref|ZP_05810232.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259032234|gb|EEW33500.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 139 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 77/137 (56%), Positives = 101/137 (73%), Gaps = 7/137 (5%) Query: 1 MVG-NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M NKK PNP+DI+VG RIRLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRL Sbjct: 1 MTEENKKKPNPIDIHVGSRIRLRRNMLGMSQEKLGENLGITFQQIQKYEKGTNRVGASRL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFIQIDDV 113 Q I+ +L P++FFF+ +P S + ++F +P+GLQLNR F++I DV Sbjct: 61 QAIASILGVPVAFFFEDAPGQESSANRGFAEDASMAFAVEFCGSPEGLQLNRAFVKIADV 120 Query: 114 KVRQKIIELVRSIVSSE 130 KVR++II+LV+S+ + + Sbjct: 121 KVRRRIIDLVKSLAADD 137 >gi|319408017|emb|CBI81671.1| transcriptional regulator [Bartonella schoenbuchensis R1] Length = 136 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 70/132 (53%), Positives = 96/132 (72%), Gaps = 1/132 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+D+ VG RIRLRR +LG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTETRKKPDPIDVYVGTRIRLRRNMLGLTQEKLGEQLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 I+E+++ P+S+FFD + E+N MDF S+ +G+QL R F I D KVR+KI Sbjct: 61 AIAEIMDVPVSYFFDKGITQSVEGFAESESNFMDFCSSSEGIQLMRAFTNILDAKVRRKI 120 Query: 120 IELVRSIVSSEK 131 I+L +++ ++ Sbjct: 121 IDLAKALSEEDQ 132 >gi|298293906|ref|YP_003695845.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296930417|gb|ADH91226.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 135 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 71/131 (54%), Positives = 95/131 (72%), Gaps = 5/131 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 KK PNP+D +VG R+R+RRM++GMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQ+IS Sbjct: 2 TKKSPNPIDKHVGSRVRMRRMMIGMSQEKLGENLGITFQQIQKYEKGTNRIGASRLQNIS 61 Query: 64 EVLESPISFFFDVSP-----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 VL P+SFFF+ +P + V DF++T +GL L R F++I D KVR++ Sbjct: 62 NVLGVPVSFFFEGAPNVGIANTGFAEDASPAYVSDFLATTEGLALTRAFLKIADSKVRRR 121 Query: 119 IIELVRSIVSS 129 I++LV ++ S Sbjct: 122 IVDLVEALASE 132 >gi|49475033|ref|YP_033074.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49237838|emb|CAF27033.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 138 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 71/133 (53%), Positives = 96/133 (72%), Gaps = 2/133 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+D+ VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NR+GASRLQ Sbjct: 1 MTETRKKPDPIDVYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD V + +N+ MDF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGVGTQQVEGFAESDNDFMDFCSSSEGIQLMRAFTNISDSKVRRK 120 Query: 119 IIELVRSIVSSEK 131 II+L +++ E Sbjct: 121 IIDLAKALSEEED 133 >gi|13474622|ref|NP_106191.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14025376|dbj|BAB51977.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 139 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 75/137 (54%), Positives = 101/137 (73%), Gaps = 7/137 (5%) Query: 1 MVG-NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M NKK PNP+DI+VG R+RLRR +LGMSQEKLGE LGITFQQ+QKYEKG NRVGASRL Sbjct: 1 MTEENKKKPNPIDIHVGSRVRLRRNMLGMSQEKLGENLGITFQQIQKYEKGTNRVGASRL 60 Query: 60 QHISEVLESPISFFFDVSPTVCS------DISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 Q I+ +L P++FFF+ +P + + ++F +P+GLQLNR F++I DV Sbjct: 61 QAIASILGVPVAFFFEDAPGQEAAPGRGFSEDASMAFAVEFCGSPEGLQLNRAFVKIADV 120 Query: 114 KVRQKIIELVRSIVSSE 130 KVR++II+LV+S+ + + Sbjct: 121 KVRRRIIDLVKSLAADD 137 >gi|163867517|ref|YP_001608716.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161017163|emb|CAK00721.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 139 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 70/132 (53%), Positives = 97/132 (73%), Gaps = 2/132 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NR+GASRLQ Sbjct: 1 MTETRKKPDPIDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD ++ + ++N MDF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGLTSQQVEGFAESDHNFMDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSIVSSE 130 II+L +++ + Sbjct: 121 IIDLAKALSEED 132 >gi|182678047|ref|YP_001832193.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633930|gb|ACB94704.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 155 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 71/143 (49%), Positives = 101/143 (70%), Gaps = 11/143 (7%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK+PNP+D +VG ++R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NR+GASRLQ IS Sbjct: 2 KKVPNPIDCHVGGKVRMRRVMLGMSQEKLGEALGLTFQQVQKYEKGTNRIGASRLQQISR 61 Query: 65 VLESPISFFFDVSPT-----------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 +L+ P +FFFD +P + + + + V +F++TP+GL LN F +I D Sbjct: 62 ILDVPPAFFFDGAPAFEGMPRPNAPVIPTGDEASLSYVTEFLATPEGLHLNLAFRRIKDP 121 Query: 114 KVRQKIIELVRSIVSSEKKYRTI 136 KVR++I+ELV +I E++ + Sbjct: 122 KVRKRIVELVMAIAGDEEQLLSP 144 >gi|240849887|ref|YP_002971275.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240267010|gb|ACS50598.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 137 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 69/132 (52%), Positives = 97/132 (73%), Gaps = 2/132 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NR+GASRLQ Sbjct: 1 MTETRKKPDPIDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD ++ + ++N +DF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGITSQQVEGFAESDHNFIDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSIVSSE 130 II+L +++ + Sbjct: 121 IIDLAKALSEED 132 >gi|39933520|ref|NP_945796.1| XRE family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192288878|ref|YP_001989483.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|39647366|emb|CAE25887.1| possible transcriptional regulator, XRE family [Rhodopseudomonas palustris CGA009] gi|192282627|gb|ACE99007.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length = 139 Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 70/133 (52%), Positives = 93/133 (69%), Gaps = 6/133 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q I+ Sbjct: 2 STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIA 61 Query: 64 EVLESPISFFFDVSPTVCS------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 EVL+ P+SF F+ P+ + + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EVLQVPVSFLFEGGPSGGLANGNGFSEAPSPSYVSDFLATSEGLALTRAFTKITDAKLRR 121 Query: 118 KIIELVRSIVSSE 130 I++LV I + E Sbjct: 122 SIVDLVERIAARE 134 >gi|316931572|ref|YP_004106554.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599286|gb|ADU41821.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 139 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 70/132 (53%), Positives = 92/132 (69%), Gaps = 6/132 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q I+E Sbjct: 3 TKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIAE 62 Query: 65 VLESPISFFFDVSPT------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 VL+ P+SF F+ P+ + + V DF++T +GL L R F +I D K+R+ Sbjct: 63 VLQVPVSFLFEGGPSGGLANGSGFSEAPSPSYVSDFLATSEGLALTRAFTKITDAKLRRS 122 Query: 119 IIELVRSIVSSE 130 I++LV I + E Sbjct: 123 IVDLVERIAARE 134 >gi|319405105|emb|CBI78709.1| transcriptional regulator [Bartonella sp. AR 15-3] Length = 137 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 71/132 (53%), Positives = 97/132 (73%), Gaps = 2/132 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTKTRKKPDPIDIYVGARIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD ++ + +NN +DF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGIAIQSIDGFTESDNNFIDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSIVSSE 130 II+L +++ + Sbjct: 121 IIDLAKALSEED 132 >gi|154254053|ref|YP_001414877.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154158003|gb|ABS65220.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 147 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 66/138 (47%), Positives = 93/138 (67%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K+PNP+D++VG R+R+RRM++GMSQEKLGE LG+TFQQVQKYEKG NR+GASRL I Sbjct: 2 TRKLPNPIDVHVGGRVRMRRMLIGMSQEKLGESLGLTFQQVQKYEKGSNRIGASRLYQIG 61 Query: 64 EVLESPISFFFDVSPT-----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 VL PI +FF+ + D + MD +ST +G+QLN F I D K+R++ Sbjct: 62 SVLGVPIEYFFEGVEPGEGNGMEPDAAPSPGFDMDILSTAEGIQLNSAFFAIADPKLRKR 121 Query: 119 IIELVRSIVSSEKKYRTI 136 I++LV+++ + T Sbjct: 122 ILDLVKALGGLSDEVETP 139 >gi|299133379|ref|ZP_07026574.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298593516|gb|EFI53716.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 136 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 64/130 (49%), Positives = 92/130 (70%), Gaps = 5/130 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PNPVD VG R+R+RR++LG+SQEKLG+ LG+TFQQ+QKYEKG NR+GASRL I+++ Sbjct: 4 KTPNPVDKYVGSRVRMRRIMLGLSQEKLGDALGLTFQQIQKYEKGTNRIGASRLHQIADI 63 Query: 66 LESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L+ P+SF F+ PT + + + V DF++T +GL L R F +I D K+R+ I+ Sbjct: 64 LQVPVSFLFEGGPTSNTSVEGLGEAPSPAYVSDFLATSEGLALTRAFTKITDAKLRRSIV 123 Query: 121 ELVRSIVSSE 130 +LV I ++ Sbjct: 124 DLVEQIAGTQ 133 >gi|121602273|ref|YP_989497.1| DNA-binding protein [Bartonella bacilliformis KC583] gi|120614450|gb|ABM45051.1| DNA-binding protein [Bartonella bacilliformis KC583] Length = 137 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 70/133 (52%), Positives = 98/133 (73%), Gaps = 2/133 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR +LG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTETRKKPDPIDIYVGTRIRLRRNMLGLTQEKLGEQLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD ++ + ++N MDF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGINNQPEESFAESDSNFMDFCSSNEGIQLMRAFTNILDAKVRRK 120 Query: 119 IIELVRSIVSSEK 131 II+L +++ ++ Sbjct: 121 IIDLAKALSEEDQ 133 >gi|92115659|ref|YP_575388.1| XRE family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91798553|gb|ABE60928.1| transcriptional regulator, XRE family [Nitrobacter hamburgensis X14] Length = 139 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 70/133 (52%), Positives = 94/133 (70%), Gaps = 6/133 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD +VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++L+ P+SF F+ SP + + V DF++T +GL L R F +I D K+R+ Sbjct: 62 DILQVPVSFLFEGSPGTGIAVAGGLSEAPSPAYVSDFLATSEGLALTRAFTRITDAKLRR 121 Query: 118 KIIELVRSIVSSE 130 I++LV I + E Sbjct: 122 SIVDLVEQIAARE 134 >gi|209883668|ref|YP_002287525.1| transcriptional regulator of XRE family [Oligotropha carboxidovorans OM5] gi|209871864|gb|ACI91660.1| transcriptional regulator of XRE family [Oligotropha carboxidovorans OM5] Length = 148 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 63/130 (48%), Positives = 91/130 (70%), Gaps = 5/130 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PNPVD VG R+R+RR++LG+SQEKLG+ LG+TFQQ+QKYEKG NR+GASRL I+++ Sbjct: 16 KTPNPVDKYVGSRVRMRRIMLGLSQEKLGDALGLTFQQIQKYEKGTNRIGASRLHQIADI 75 Query: 66 LESPISFFFDVSPT-----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L+ P+SF F+ P+ + V DF++T +GL L R F +I D K+R+ I+ Sbjct: 76 LQVPVSFLFEGGPSSNVILDGLGEAPSPAYVSDFLATSEGLALTRAFTRITDAKLRRSIV 135 Query: 121 ELVRSIVSSE 130 +LV I +++ Sbjct: 136 DLVEQIANTQ 145 >gi|217979023|ref|YP_002363170.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] gi|217504399|gb|ACK51808.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] Length = 166 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 72/143 (50%), Positives = 97/143 (67%), Gaps = 12/143 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KKIPNP+D +VG R+R+RR+ILGMSQEKLGE LG+TFQQVQKYEKG NR+GASRLQ Sbjct: 8 MEKAKKIPNPIDRHVGSRVRMRRVILGMSQEKLGEALGLTFQQVQKYEKGANRIGASRLQ 67 Query: 61 HISEVLESPISFFFDVSPTVCSDI------------SSEENNVMDFISTPDGLQLNRYFI 108 IS L+ P +FFF+ +P+ + + + V DF+ST +GL LN F Sbjct: 68 QISRTLDVPPAFFFEGAPSFEASATGGSPALGGVAEEANSSYVADFLSTAEGLHLNMAFA 127 Query: 109 QIDDVKVRQKIIELVRSIVSSEK 131 +I D KVR++II+L+ ++ + Sbjct: 128 RIHDPKVRKRIIDLISALAGDDS 150 >gi|158421637|ref|YP_001522929.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158328526|dbj|BAF86011.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 150 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 73/133 (54%), Positives = 96/133 (72%), Gaps = 7/133 (5%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK PNP+D +VG R+R+RRM++GMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQ IS Sbjct: 3 KKAPNPIDKHVGSRVRMRRMMVGMSQEKLGEHLGITFQQIQKYEKGTNRIGASRLQQISI 62 Query: 65 VLESPISFFFDVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 VL P++FFF+ +P+ + E V DF++T DGL L R F++I D KVR+ Sbjct: 63 VLSVPVAFFFEGAPSANPEADGEGFAEGHSPAYVSDFLATSDGLALTRNFMRISDAKVRR 122 Query: 118 KIIELVRSIVSSE 130 +I++LV +I E Sbjct: 123 RIVDLVSAIAGEE 135 >gi|86747721|ref|YP_484217.1| XRE family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86570749|gb|ABD05306.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris HaA2] Length = 139 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 71/133 (53%), Positives = 93/133 (69%), Gaps = 6/133 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPT------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 EVL+ P+SF F+ P+ + + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EVLQVPVSFLFEGGPSGGLANGSGFSEAPSPSYVSDFLATSEGLALTRAFTKITDAKLRR 121 Query: 118 KIIELVRSIVSSE 130 I++LV I + E Sbjct: 122 SIVDLVEQIAARE 134 >gi|296445773|ref|ZP_06887726.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] gi|296256753|gb|EFH03827.1| transcriptional regulator, XRE family [Methylosinus trichosporium OB3b] Length = 145 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 68/133 (51%), Positives = 94/133 (70%), Gaps = 5/133 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK P+P+D +VG R+R++R++L MSQEKLGE LG+TFQQVQKYEKG NR+GASRLQ IS+ Sbjct: 2 KKAPDPIDRHVGSRVRMQRVLLKMSQEKLGEALGLTFQQVQKYEKGTNRIGASRLQQISK 61 Query: 65 VLESPISFFFDVSPT-----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 L P SFFFD +P+ S V++F+ST +GL LNR F +I D KVR+++ Sbjct: 62 TLNVPPSFFFDGAPSVGAPGDGFAEESSSQYVVEFLSTAEGLHLNRAFARIKDPKVRKRV 121 Query: 120 IELVRSIVSSEKK 132 I+L+ ++ + Sbjct: 122 IDLISTLADQSED 134 >gi|319898343|ref|YP_004158436.1| transcriptional regulator [Bartonella clarridgeiae 73] gi|319402307|emb|CBI75846.1| transcriptional regulator [Bartonella clarridgeiae 73] Length = 137 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 71/132 (53%), Positives = 95/132 (71%), Gaps = 2/132 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTETRKKPDPIDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD + +NN M+F S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGIGIQSVEGFEESDNNFMNFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSIVSSE 130 II+L +++ + Sbjct: 121 IIDLAKALSEED 132 >gi|323138533|ref|ZP_08073601.1| helix-turn-helix domain protein [Methylocystis sp. ATCC 49242] gi|322396167|gb|EFX98700.1| helix-turn-helix domain protein [Methylocystis sp. ATCC 49242] Length = 141 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 69/139 (49%), Positives = 97/139 (69%), Gaps = 8/139 (5%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK P+P+D +VG R+R++R+++ MSQEKLGE LG+TFQQVQKYEKGVNR+GASRLQ IS+ Sbjct: 2 KKTPDPIDRHVGSRVRMQRILMKMSQEKLGEALGLTFQQVQKYEKGVNRIGASRLQQISK 61 Query: 65 VLESPISFFFDVSPTVCSDI--------SSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 L P SFFF+ +PT+ + S V+DF+ST +G+ LNR F +I D KVR Sbjct: 62 TLNVPPSFFFEGAPTLNGAVDGAGGFAEESSSQYVVDFLSTAEGMHLNRAFARIKDPKVR 121 Query: 117 QKIIELVRSIVSSEKKYRT 135 +++++LV ++ E Sbjct: 122 KRVLDLVTTLADQEDAAVE 140 >gi|227820124|ref|YP_002824095.1| transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339123|gb|ACP23342.1| probable transcriptional regulator protein [Sinorhizobium fredii NGR234] Length = 148 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 64/132 (48%), Positives = 91/132 (68%), Gaps = 5/132 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK P +DI+VG RIRLRR+ L SQ KLGE L ++FQQVQKYEKG+NRVGASRLQ + Sbjct: 6 NKKEPRAIDIHVGNRIRLRRLALDWSQTKLGEALDVSFQQVQKYEKGLNRVGASRLQRAA 65 Query: 64 EVLESPISFFFDVSPTVCSD-----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL +S+FF+ P + + + ++ F++T +G+ LNR F ++ D +VR+K Sbjct: 66 EVLSVSVSYFFEGGPETSNGGEQSAAVTSSDEMLQFLATEEGVALNRAFARLSDPQVRRK 125 Query: 119 IIELVRSIVSSE 130 I+ LV+++ SE Sbjct: 126 IVALVKALAPSE 137 >gi|154245759|ref|YP_001416717.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159844|gb|ABS67060.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 137 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 73/132 (55%), Positives = 95/132 (71%), Gaps = 5/132 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK PNP+D +VG R+R+RRM++ MSQEKLGE LGITFQQ+QKYEKG NR+GASRLQ IS Sbjct: 3 KKAPNPIDKHVGSRVRMRRMMVSMSQEKLGEHLGITFQQIQKYEKGTNRIGASRLQQIST 62 Query: 65 VLESPISFFFDVSPTVCSD-----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 VL P++FFF+ +PTV + V DF++T DGL L R F++I D KVR++I Sbjct: 63 VLGVPVAFFFEGAPTVGPEGEGFSEDQSPAYVSDFLATSDGLTLTRNFMRITDPKVRRRI 122 Query: 120 IELVRSIVSSEK 131 +ELV +I + Sbjct: 123 VELVIAIAGEAE 134 >gi|146337220|ref|YP_001202268.1| putative transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146190026|emb|CAL74018.1| conserved hypothetical protein; putative transcriptional regulatory protein HTH type [Bradyrhizobium sp. ORS278] Length = 140 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 70/132 (53%), Positives = 94/132 (71%), Gaps = 5/132 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD +VG R+R+RR++LGMSQEKLGE LG+TFQQ+QKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQIQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPTVCSD-----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL+ P+SF F+ P+ ++ + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EVLQVPVSFLFEGVPSGGTNGEAFGEGASPAYVSDFLATSEGLALTRAFTRIHDSKLRRS 121 Query: 119 IIELVRSIVSSE 130 I++LV I E Sbjct: 122 IVDLVEQIADRE 133 >gi|75674218|ref|YP_316639.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419088|gb|ABA03287.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 139 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 71/138 (51%), Positives = 95/138 (68%), Gaps = 6/138 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD +VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSP------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 E+L+ P+SF F+ SP T + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EILQVPVSFLFEGSPGTGVVRTGGMSEAPSPAYVSDFLATSEGLALTRAFTRITDAKLRR 121 Query: 118 KIIELVRSIVSSEKKYRT 135 I+++V I + E + Sbjct: 122 SIVDMVEQIAAREPSDQR 139 >gi|319406551|emb|CBI80193.1| transcriptional regulator [Bartonella sp. 1-1C] Length = 137 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 72/132 (54%), Positives = 97/132 (73%), Gaps = 2/132 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTKTRKKPDPMDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD +S + +NN +DF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGISIQSLEGFTESDNNFIDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSIVSSE 130 II+L +++ + Sbjct: 121 IIDLAKALSEED 132 >gi|91974719|ref|YP_567378.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91681175|gb|ABE37477.1| transcriptional regulator [Rhodopseudomonas palustris BisB5] Length = 139 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 70/133 (52%), Positives = 93/133 (69%), Gaps = 6/133 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPTVCS------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 E+L+ P+SF F+ P+ + + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EILQVPVSFLFEGGPSGGLANANGFSEAPSPSYVSDFLATSEGLALTRAFTKISDAKLRR 121 Query: 118 KIIELVRSIVSSE 130 I++LV I + E Sbjct: 122 SIVDLVEQIAARE 134 >gi|319403635|emb|CBI77220.1| transcriptional regulator [Bartonella rochalimae ATCC BAA-1498] Length = 137 Score = 113 bits (283), Expect = 6e-24, Method: Composition-based stats. Identities = 71/132 (53%), Positives = 96/132 (72%), Gaps = 2/132 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K P+P+DI VG RIRLRR ILG++QEKLGE LGITFQQ+QKYEKG NRVGASRLQ Sbjct: 1 MTKTRKKPDPMDIYVGTRIRLRRNILGLTQEKLGEKLGITFQQIQKYEKGTNRVGASRLQ 60 Query: 61 HISEVLESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+E+++ P+S+FFD + + +NN +DF S+ +G+QL R F I D KVR+K Sbjct: 61 AIAEIMDVPVSYFFDKGIGIQSLEGFTESDNNFIDFCSSSEGIQLMRAFTNISDAKVRRK 120 Query: 119 IIELVRSIVSSE 130 II+L +++ + Sbjct: 121 IIDLAKALSEED 132 >gi|85714180|ref|ZP_01045169.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] gi|85699306|gb|EAQ37174.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] Length = 139 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 70/138 (50%), Positives = 94/138 (68%), Gaps = 6/138 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD +VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPT------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 E+L+ P+SF F+ SP + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EILQVPVSFLFEGSPGTGVSRIDGLSEAPSPAYVSDFLATSEGLALTRAFTRITDAKLRR 121 Query: 118 KIIELVRSIVSSEKKYRT 135 I+++V I + E + Sbjct: 122 SIVDMVEQIAAREPSDQR 139 >gi|27375901|ref|NP_767430.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349039|dbj|BAC46055.1| bll0790 [Bradyrhizobium japonicum USDA 110] Length = 137 Score = 113 bits (282), Expect = 8e-24, Method: Composition-based stats. Identities = 67/130 (51%), Positives = 94/130 (72%), Gaps = 5/130 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQ+QKYEKG NRVGASR+Q I+E+ Sbjct: 3 KAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQIQKYEKGTNRVGASRIQQIAEI 62 Query: 66 LESPISFFFDVSPTVCSDIS-----SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L+ P+SF F+ P+ + + + + V DF++T +GL L + F +I D K+R+ I+ Sbjct: 63 LQVPVSFLFEGGPSGVAGPNGFAEGASPSYVSDFLATSEGLALTKAFTRITDAKMRRSIV 122 Query: 121 ELVRSIVSSE 130 +LV I + E Sbjct: 123 DLVEQIAARE 132 >gi|148251675|ref|YP_001236260.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146403848|gb|ABQ32354.1| transcriptional regulator, XRE family [Bradyrhizobium sp. BTAi1] Length = 138 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 70/131 (53%), Positives = 94/131 (71%), Gaps = 4/131 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD +VG R+R+RR++LGMSQEKLGE LG+TFQQ+QKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQIQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSPTVCSD----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 EVL+ P+SF F+ P+ ++ + V DF++T +GL L R F +I D K+R+ I Sbjct: 62 EVLQIPVSFLFEGVPSGSTNGEPFDGASPAYVSDFLATSEGLALTRAFTRIHDSKLRRSI 121 Query: 120 IELVRSIVSSE 130 ++LV I E Sbjct: 122 VDLVEQIADRE 132 >gi|83945000|ref|ZP_00957366.1| transcriptional regulator, Cro/CI family protein [Oceanicaulis alexandrii HTCC2633] gi|83851782|gb|EAP89637.1| transcriptional regulator, Cro/CI family protein [Oceanicaulis alexandrii HTCC2633] Length = 144 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 66/128 (51%), Positives = 87/128 (67%), Gaps = 4/128 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N + PN VD +VG RIRLRR +L +SQEKLGE LG+TFQQVQKYE+G NRVGA RL Sbjct: 1 MTANPRGPNAVDRHVGSRIRLRRQLLNLSQEKLGEELGVTFQQVQKYERGTNRVGAGRLW 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNV----MDFISTPDGLQLNRYFIQIDDVKVR 116 ++++VL+ P+SFF+D E + DFI + DG+ L + F +I D KVR Sbjct: 61 NLAKVLDVPVSFFYDGVAETVGQPGFSEGDQTPIVDDFIQSADGVALAQAFARIKDSKVR 120 Query: 117 QKIIELVR 124 ++I+ELVR Sbjct: 121 RRILELVR 128 >gi|150376667|ref|YP_001313263.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031214|gb|ABR63330.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 152 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 64/138 (46%), Positives = 90/138 (65%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK PNP+D VG R+R+RR+++G+SQEKL + LGITFQQVQKYEKG NR+GASRLQ I+ Sbjct: 2 NKKDPNPIDAFVGSRVRMRRLMIGLSQEKLADGLGITFQQVQKYEKGTNRIGASRLQAIA 61 Query: 64 EVLESPISFFFDVSPTVCSD-----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++L SFFF E + F+++ +G+ LNR F++I D +R+K Sbjct: 62 DILGVHPSFFFQQEEGSTQSGRPSGDIHESQEISSFVASKEGIALNRAFLKIADPVLRKK 121 Query: 119 IIELVRSIVSSEKKYRTI 136 II LV ++ S + +T Sbjct: 122 IISLVAAMAQSPESDQTP 139 >gi|90421997|ref|YP_530367.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104011|gb|ABD86048.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB18] Length = 138 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 71/132 (53%), Positives = 92/132 (69%), Gaps = 5/132 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSP-----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 E+L+ P+SF F+ P ++ V DF++T +GL L R F +I D K+R+ Sbjct: 62 EILQVPVSFLFEGGPGGLAKADGFAEAASPAYVSDFLATSEGLALTRAFTRITDSKLRRS 121 Query: 119 IIELVRSIVSSE 130 I++LV I S E Sbjct: 122 IVDLVEQIASRE 133 >gi|167644301|ref|YP_001681964.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167346731|gb|ABZ69466.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 171 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 57/134 (42%), Positives = 89/134 (66%), Gaps = 5/134 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + PN VD++VG R+R+RR +LG+SQE L + LG+TFQQVQKYE+G NRV AS+L Sbjct: 32 TPEARTPNVVDLHVGGRVRMRRKMLGISQEHLADALGLTFQQVQKYERGANRVSASKLYE 91 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENN-----VMDFISTPDGLQLNRYFIQIDDVKVR 116 I++ L+ P+S+FF+ +D + + DF++TP+GL+L F +I +VR Sbjct: 92 IAKTLQVPVSYFFEGLADPVTDEGDDAGEAANRVITDFLNTPEGLELAAIFPKIGKGRVR 151 Query: 117 QKIIELVRSIVSSE 130 ++I++LVR++ E Sbjct: 152 RQILDLVRAMADDE 165 >gi|144900187|emb|CAM77051.1| transcriptional regulators [Magnetospirillum gryphiswaldense MSR-1] Length = 161 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 59/129 (45%), Positives = 84/129 (65%), Gaps = 9/129 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNP+D++VG R+RLRR +LGMSQEKLGE LG+TFQQVQKYE+G NRVGASRL +S VL Sbjct: 26 KPNPIDVHVGARVRLRRTLLGMSQEKLGEALGLTFQQVQKYERGANRVGASRLFDLSRVL 85 Query: 67 ESPISFFFDVSPTVCSD---------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + P+SFFFD + D ++ + L+L R + +I D VR+ Sbjct: 86 DVPVSFFFDDMSEEVEALSPRLISGLAEEPASFETDPMTKRETLELVRAYYRITDPHVRK 145 Query: 118 KIIELVRSI 126 ++++L +++ Sbjct: 146 RVLDLAKAL 154 >gi|190014814|ref|YP_001967578.1| orf_Bo182 [Agrobacterium tumefaciens] gi|71849617|gb|AAZ50565.1| orf_Bo182 [Agrobacterium tumefaciens] Length = 140 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 65/139 (46%), Positives = 90/139 (64%), Gaps = 5/139 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K PN +D+ VG RIRL+R +GMSQ+ L LG+TFQQVQKYEKG NRVGASRL Sbjct: 1 MSDAGKAPNAIDVEVGARIRLKRKPIGMSQQSLAGKLGVTFQQVQKYEKGTNRVGASRLS 60 Query: 61 HISEVLESPISFFFDVS-----PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 I+ L+ P+S+FFD + I+ E + V F+S+ +G LNR F+QI V Sbjct: 61 QIATALDVPMSYFFDGNQGERQDDDNPHITRETDEVALFLSSTEGFNLNRAFMQIPSAAV 120 Query: 116 RQKIIELVRSIVSSEKKYR 134 RQK++ LV+S+ +E++ + Sbjct: 121 RQKVVLLVKSVARAEEEAQ 139 >gi|312115567|ref|YP_004013163.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311220696|gb|ADP72064.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 174 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 63/140 (45%), Positives = 97/140 (69%), Gaps = 8/140 (5%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + PNPVDI+VG R+R RRMI+GMSQEKLGE + +TFQQ+QKYEKG NR+GASRL +S++ Sbjct: 27 RKPNPVDIHVGSRVRYRRMIVGMSQEKLGEKMNLTFQQIQKYEKGTNRIGASRLFQLSKI 86 Query: 66 LESPISFFFDVSPTVCSDISSEENNVM--------DFISTPDGLQLNRYFIQIDDVKVRQ 117 LE P+ +FF+ + + S+ DF+++ +GL+LN+ F +I D KVR+ Sbjct: 87 LEVPVGYFFEDAFAHSAPSSASHGLHEPEQEGFLLDFLNSREGLELNKAFAKIQDPKVRR 146 Query: 118 KIIELVRSIVSSEKKYRTIE 137 ++I+LVR++ + + + + Sbjct: 147 RVIDLVRALSEEKPEAKESQ 166 >gi|209966238|ref|YP_002299153.1| DNA-binding protein, putative [Rhodospirillum centenum SW] gi|209959704|gb|ACJ00341.1| DNA-binding protein, putative [Rhodospirillum centenum SW] Length = 149 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 61/129 (47%), Positives = 91/129 (70%), Gaps = 3/129 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNPVD++VG R+RLRR +LGMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL Sbjct: 19 KPNPVDVHVGSRVRLRRTLLGMSQEKLGEAIGLTFQQVQKYERGANRIGASRLYDLSRVL 78 Query: 67 ESPISFFFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + P+SFFFD P+ + ++E+ D ++ + L+L R + +I + VR++I EL Sbjct: 79 DVPVSFFFDDMPSDDAPRTAEQAQADGEPDPMAKRETLELVRAYYRITEPAVRKRIFELT 138 Query: 124 RSIVSSEKK 132 +++ + + Sbjct: 139 KAVAHASAE 147 >gi|300024991|ref|YP_003757602.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526812|gb|ADJ25281.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 154 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 70/135 (51%), Positives = 96/135 (71%), Gaps = 9/135 (6%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + NP+D++VG R+RLRRM+LGMSQEKLGE LG+TFQQVQKYEKGVNR+GASRL +++V Sbjct: 20 RRANPMDVHVGSRVRLRRMLLGMSQEKLGEHLGLTFQQVQKYEKGVNRIGASRLFDLAKV 79 Query: 66 LESPISFFFDVSPTVCS---------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 L P+ FF+D +P+ E+ V+DF+ T +GL+LN+ F +I D KVR Sbjct: 80 LGVPVQFFYDEAPSGVQTTGNVIAGFAEQPGESYVVDFLGTREGLELNKAFARISDPKVR 139 Query: 117 QKIIELVRSIVSSEK 131 + I++LVRS+ E Sbjct: 140 RSIVDLVRSLAGEES 154 >gi|16264444|ref|NP_437236.1| putative transcriptional regulator protein [Sinorhizobium meliloti 1021] gi|307306783|ref|ZP_07586524.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307320821|ref|ZP_07600231.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|15140581|emb|CAC49096.1| putative transcriptional regulator protein [Sinorhizobium meliloti 1021] gi|306893531|gb|EFN24307.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306902074|gb|EFN32672.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 152 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 62/138 (44%), Positives = 90/138 (65%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK PNP+D VG R+R+RR+++G+SQEKL + LGITFQQVQKYEKG NR+GASRLQ I+ Sbjct: 2 NKKDPNPIDAFVGSRVRMRRLMIGLSQEKLADGLGITFQQVQKYEKGTNRIGASRLQAIA 61 Query: 64 EVLESPISFFFDVSPTV-----CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++L SFFF + E + F+++ +G+ LNR F++I D +R+K Sbjct: 62 DILGVHPSFFFQQDEGSVHSGKPAADVHESQEISSFVASKEGIALNRAFLKITDPVLRKK 121 Query: 119 IIELVRSIVSSEKKYRTI 136 II LV ++ + + + Sbjct: 122 IISLVAAMAQTPEADQAP 139 >gi|83313567|ref|YP_423831.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82948408|dbj|BAE53272.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 164 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 59/134 (44%), Positives = 85/134 (63%), Gaps = 13/134 (9%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVDI+VG R+RLRR ++GMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL+ Sbjct: 25 PNPVDIHVGARVRLRRTLMGMSQEKLGESIGLTFQQVQKYERGANRIGASRLFDLSRVLD 84 Query: 68 SPISFFFDVSPTVCSD-------------ISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 P+SFFFD D + D ++ + L+L R + I D + Sbjct: 85 VPVSFFFDDMAETVQDQSPVAVARGTSGLNEEPASFEADPMTKRETLELVRAYYSITDPQ 144 Query: 115 VRQKIIELVRSIVS 128 VR+++ +L +++ + Sbjct: 145 VRRRVYDLAKALAA 158 >gi|220920276|ref|YP_002495577.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219944882|gb|ACL55274.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 137 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 59/131 (45%), Positives = 90/131 (68%), Gaps = 5/131 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK P+P+D +VG R+R+RR+++G+SQEKLG+ LG+TFQQ+QKYEKG NR+ ASRLQ I+E Sbjct: 2 KKAPDPIDRHVGHRVRVRRLLVGVSQEKLGDALGVTFQQIQKYEKGANRISASRLQQIAE 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVM-----DFISTPDGLQLNRYFIQIDDVKVRQKI 119 +L P+ FF++ +P + + E V D T LQL R F ++DD +VR+++ Sbjct: 62 MLGVPVGFFYEGAPRPENWLDEEHVEVARQPGSDLFWTSQDLQLVRAFQRVDDPQVRRRL 121 Query: 120 IELVRSIVSSE 130 + LV ++ + Sbjct: 122 VALVEALSGKD 132 >gi|115522230|ref|YP_779141.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115516177|gb|ABJ04161.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisA53] Length = 140 Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats. Identities = 69/132 (52%), Positives = 93/132 (70%), Gaps = 5/132 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PNPVD VG R+R+RR++LGMSQEKLGE LG+TFQQVQKYEKG NRVGASR+Q IS Sbjct: 2 STKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTNRVGASRIQQIS 61 Query: 64 EVLESPISFFFDVSP-----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 E+L+ P+SF F+ P ++ + V DF++T +GL L R F +I D K+R+ Sbjct: 62 EILQVPVSFLFEGGPGANIKGEGFSEAASPSYVSDFLATSEGLALTRAFTRIADSKLRRS 121 Query: 119 IIELVRSIVSSE 130 I++LV I + + Sbjct: 122 IVDLVEQIAARD 133 >gi|144899566|emb|CAM76430.1| transcriptional regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 161 Score = 110 bits (274), Expect = 7e-23, Method: Composition-based stats. Identities = 62/137 (45%), Positives = 87/137 (63%), Gaps = 12/137 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNP+D++VG R+RLRR +LGMSQEKLGE LG+TFQQVQKYE+G NRVGASRL +S VL Sbjct: 25 KPNPIDVHVGSRVRLRRTLLGMSQEKLGEALGLTFQQVQKYERGANRVGASRLFDLSRVL 84 Query: 67 ESPISFFFDVSPTVCSDISSE------------ENNVMDFISTPDGLQLNRYFIQIDDVK 114 + P+SFFFD S + D ++ + L+L R + +I D + Sbjct: 85 DVPVSFFFDDMNDELKAQSPALIAGMTALEEPPAHFEHDPLAKRETLELVRAYYRIADPQ 144 Query: 115 VRQKIIELVRSIVSSEK 131 VR+++ EL +++ S+ Sbjct: 145 VRKRVYELAKALADSDS 161 >gi|295688460|ref|YP_003592153.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430363|gb|ADG09535.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 132 Score = 110 bits (274), Expect = 7e-23, Method: Composition-based stats. Identities = 51/132 (38%), Positives = 82/132 (62%), Gaps = 3/132 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P+PVD++VG+R+R+RR LG SQ+ L + LG+TFQQVQKYE G NR+ AS+L Sbjct: 1 MAEDKTPDPVDVHVGRRLRMRRKDLGYSQQALADALGLTFQQVQKYEGGANRISASKLHA 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEEN---NVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + L++PI FFF+ ++ + + +F STP G +L R ++ I+ +R+ Sbjct: 61 TAMFLKTPIGFFFEGLDDPEGADTTAADLANEMAEFWSTPGGPELARAYVAIESTGMRRH 120 Query: 119 IIELVRSIVSSE 130 + +L ++I E Sbjct: 121 LADLAKAIADDE 132 >gi|222080150|ref|YP_002540013.1| transcriptional regulator [Agrobacterium vitis S4] gi|221738795|gb|ACM39574.1| transcriptional regulator [Agrobacterium vitis S4] Length = 146 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 62/131 (47%), Positives = 84/131 (64%), Gaps = 2/131 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K+PNPVDI VG+RI+ RR ILGMSQ KL E LG+TFQQVQKY+KG NRVGASRLQ Sbjct: 7 MKRGPKVPNPVDIEVGERIKARRRILGMSQGKLAEALGVTFQQVQKYKKGKNRVGASRLQ 66 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 +++ + P S+FF + + + F++ +GL LNR F I VR++ Sbjct: 67 NVATIFGVPFSYFFPDQSSGTEGDITSNPGKEITAFLANNEGLDLNRAFALISSPLVRKR 126 Query: 119 IIELVRSIVSS 129 ++ LV+SI + Sbjct: 127 VVGLVKSISEA 137 >gi|163797135|ref|ZP_02191090.1| Predicted transcriptional regulator [alpha proteobacterium BAL199] gi|159177651|gb|EDP62204.1| Predicted transcriptional regulator [alpha proteobacterium BAL199] Length = 150 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 3/126 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNPVD++VG RIRLRR +LGMSQE+LG+ LG+TFQQVQKYE+G NRVGASRL ++ L Sbjct: 19 NPNPVDVHVGVRIRLRRTLLGMSQERLGDALGLTFQQVQKYERGANRVGASRLFDLARAL 78 Query: 67 ESPISFFFDVSPTVCSD---ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + P+ FFFD + + D + + ++L R F +I D R+++ EL Sbjct: 79 QVPVGFFFDDLADGTVEGKVPPASATPADDPMQQRETIELVRAFYRIPDPTARRRLYELT 138 Query: 124 RSIVSS 129 RSI + Sbjct: 139 RSIADA 144 >gi|209552341|ref|YP_002284256.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539453|gb|ACI59385.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 152 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 66/138 (47%), Positives = 94/138 (68%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K PN +D VG RIR+RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTPNAIDGYVGARIRMRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFFDVSPTVC-----SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 +VL + SFFF+ + D+ + + V +F+ T +GL LNR F++I D +R+ Sbjct: 62 DVLHTSPSFFFEQENSEPLTLQGLDLPANSDPVAEFLQTKEGLVLNRAFLKIADRNIRET 121 Query: 119 IIELVRSIVSSEKKYRTI 136 II LV+++ +E T+ Sbjct: 122 IIALVKAMAQAESSGVTL 139 >gi|149914411|ref|ZP_01902942.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] gi|149811930|gb|EDM71763.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] Length = 123 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 51/122 (41%), Positives = 77/122 (63%), Gaps = 1/122 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI+VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I++ L Sbjct: 1 MPHPVDIHVGKRIRHRRWLVGMTQQQLAESVGIKFQQIQKYETGANRVSASRLWDIADAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + +SFFF+ T + E D + + L L R + I + + R+++ +L R + Sbjct: 61 DVDVSFFFEGLETDSGKSEAGEKVPADLLGDKEALDLVRSYYAIPENQ-RRRLFDLARVL 119 Query: 127 VS 128 Sbjct: 120 SD 121 >gi|227819239|ref|YP_002823210.1| XRE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338238|gb|ACP22457.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 149 Score = 109 bits (273), Expect = 9e-23, Method: Composition-based stats. Identities = 60/135 (44%), Positives = 94/135 (69%), Gaps = 5/135 (3%) Query: 1 MVGN---KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M N ++ P+P+D +VG++IR++R++L MSQ +L + LG+T+QQVQKYE G RV AS Sbjct: 1 MSSNLSARRRPDPIDSHVGQKIRMQRLLLHMSQTELAKALGVTYQQVQKYENGRTRVSAS 60 Query: 58 RLQHISEVLESPISFFFDVSPTVCSDIS--SEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 RLQ I+ VLE P++FFF+ S + SD + + + ++F+S+P GL LNR F +I DV+V Sbjct: 61 RLQAIANVLEVPLTFFFESSASDHSDDAGLAASRSTVEFVSSPMGLALNRAFSRIADVRV 120 Query: 116 RQKIIELVRSIVSSE 130 R+ + LV+ + + Sbjct: 121 RRSFLGLVQRLAEDD 135 >gi|241205900|ref|YP_002976996.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859790|gb|ACS57457.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 141 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 64/122 (52%), Positives = 85/122 (69%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQNGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L PI FFF+ D ++ E N F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPIGFFFENGGAGPIDGATNELN--SFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|159045315|ref|YP_001534109.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157913075|gb|ABV94508.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 123 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 47/123 (38%), Positives = 79/123 (64%), Gaps = 1/123 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKR+R RR ++GM+Q++L + +GI FQQ+QKYE G+NRV ASRL I+ L Sbjct: 1 MKHPVDVHVGKRVRHRRWMVGMTQQQLADKVGIKFQQIQKYETGMNRVSASRLWEIASSL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+SFFF+ + + + D +S + L+L R + I + + R+++ +L R + Sbjct: 61 GVPVSFFFEGLGAAQVAQTHDIDMPGDLLSDKEALELVRSYYAIPETQ-RRRLFDLARVL 119 Query: 127 VSS 129 + Sbjct: 120 SDA 122 >gi|116253382|ref|YP_769220.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|15007265|gb|AAK77322.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae] gi|115258030|emb|CAK09128.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 141 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 63/122 (51%), Positives = 86/122 (70%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQNGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+ FFF+ + D ++ E N F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPVGFFFENGGSGPIDGATNELN--SFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|218670209|ref|ZP_03519880.1| probable transcriptional regulator protein [Rhizobium etli GR56] Length = 152 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 67/138 (48%), Positives = 91/138 (65%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K PN +D VG RIR RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTPNAIDSYVGARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFFDVSPT-----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL + SFFF+ + D + V +F+ T +GL LNR F++I D ++R+ Sbjct: 62 EVLHTSPSFFFEQGDSQPLAVRGLDGPDHADPVAEFLRTKEGLVLNRAFLKIADPEIRES 121 Query: 119 IIELVRSIVSSEKKYRTI 136 II LV ++ +E + T Sbjct: 122 IIALVTAMGQAESRGLTA 139 >gi|209550535|ref|YP_002282452.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536291|gb|ACI56226.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 141 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 63/122 (51%), Positives = 84/122 (68%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L PI FFF+ I E + + F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPIGFFFE--NGGSGPIEGETSELNKFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|295687480|ref|YP_003591173.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295429383|gb|ADG08555.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 140 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 64/131 (48%), Positives = 92/131 (70%), Gaps = 1/131 (0%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G ++ PNPVD++VG RIR+RR ILG+SQE+L E LG+TFQQ+QKYE+G NRV AS+L Sbjct: 5 SGAERHPNPVDLHVGARIRMRRKILGVSQERLAEDLGLTFQQIQKYERGANRVSASKLYE 64 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I++ L++ + +FF+ T +S E V DF+ T +GL+L F +I KVR++I+ Sbjct: 65 IAKSLQASVGYFFEGLETTVDGVSEPGEPFVHDFLMTSEGLELAAQFPRITRSKVRRRIL 124 Query: 121 ELVRSIVSSEK 131 ELVRS+ E+ Sbjct: 125 ELVRSMAEEEE 135 >gi|190894495|ref|YP_001984788.1| putative transcriptional regulator [Rhizobium etli CIAT 652] gi|190700156|gb|ACE94238.1| probable transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 152 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 67/138 (48%), Positives = 89/138 (64%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K PN +D VG RIR RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTPNAIDSYVGARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFFDVSPTVCSDIS-----SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL + SFFF+ + + V +F+ T +GL LNR F++I D +R Sbjct: 62 EVLHTSPSFFFEQGDSEPVAAPGLGGRDRTDPVAEFLQTKEGLVLNRAFLKIADPHIRAS 121 Query: 119 IIELVRSIVSSEKKYRTI 136 II LV ++ +E + TI Sbjct: 122 IIALVTAMGQAESRGLTI 139 >gi|86358808|ref|YP_470700.1| transcriptional regulator protein [Rhizobium etli CFN 42] gi|86282910|gb|ABC91973.1| probable transcriptional regulator protein [Rhizobium etli CFN 42] Length = 141 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 62/124 (50%), Positives = 86/124 (69%), Gaps = 2/124 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+ FFF+ I E + + F+S+ +GL LN+ FI I+D VRQK++ L ++ Sbjct: 64 LRVPVGFFFE--NGGSGPIEGETSELNKFLSSKEGLALNKAFIAIEDPNVRQKLVALAKT 121 Query: 126 IVSS 129 + ++ Sbjct: 122 LATA 125 >gi|190893033|ref|YP_001979575.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|218517003|ref|ZP_03513843.1| probable transcriptional regulator protein [Rhizobium etli 8C-3] gi|190698312|gb|ACE92397.1| probable transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 141 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 62/122 (50%), Positives = 84/122 (68%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+ FFF+ I E + + F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPVGFFFE--NGGSGPIEGETSELNKFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|218672917|ref|ZP_03522586.1| probable transcriptional regulator protein [Rhizobium etli GR56] Length = 141 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 63/122 (51%), Positives = 84/122 (68%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+ FFF+ I E + + F+S+ +GL LN+ FI I+D +RQK++ L RS Sbjct: 64 LRVPVGFFFE--NGGSGPIEGETSELNKFLSSKEGLALNKAFIAIEDPNIRQKLVALARS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|16126908|ref|NP_421472.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235691|ref|YP_002518128.1| transcriptional regulator [Caulobacter crescentus NA1000] gi|13424258|gb|AAK24640.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220964864|gb|ACL96220.1| transcriptional regulator [Caulobacter crescentus NA1000] Length = 153 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 80/132 (60%), Gaps = 3/132 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P+PVDI+VG+R+R+RR LG SQ+ L + LG+TFQQVQKYE G NR+ AS+L Sbjct: 22 MAEDKSPDPVDIHVGRRLRMRRKDLGYSQQALADALGLTFQQVQKYEGGSNRISASKLHG 81 Query: 62 ISEVLESPISFFFDVSPTVC---SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + L++P++FFF+ + N + F S P G L R F I+ V +R+ Sbjct: 82 AAMFLKTPVAFFFEGLEDPEGVDGTAAELANEMASFWSLPGGPDLARAFSAIESVSMRKH 141 Query: 119 IIELVRSIVSSE 130 +++L R+I E Sbjct: 142 LLDLARAIAGQE 153 >gi|83595104|ref|YP_428856.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83578018|gb|ABC24569.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 210 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 55/129 (42%), Positives = 81/129 (62%), Gaps = 9/129 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNPVD++VG R+RLRR +LG+SQEKLGE +G+TFQQVQKYE+G NR+GASRL + VL Sbjct: 66 KPNPVDVHVGARVRLRRTLLGLSQEKLGEAIGLTFQQVQKYERGANRIGASRLWDLGRVL 125 Query: 67 ESPISFFFDVSPTVCSD---------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + P+++FFD D ++ + L+L R + +I D VR+ Sbjct: 126 DVPMAYFFDEMDDSTQRHSPMNIAQHPGEPPVQGTDTMTRRETLELVRAYYRIGDPGVRR 185 Query: 118 KIIELVRSI 126 ++ EL +++ Sbjct: 186 RVFELTKTL 194 >gi|167621874|ref|YP_001676659.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167351615|gb|ABZ74345.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 140 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 58/130 (44%), Positives = 85/130 (65%), Gaps = 3/130 (2%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVD++VG R+R+RR +LGMSQE L LGI+FQQ+QKYE+G NRV AS+L I+ L Sbjct: 11 PNPVDLHVGARVRVRRKVLGMSQEALANALGISFQQIQKYERGTNRVSASKLYDIARTLG 70 Query: 68 SPISFFFDVSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +P+S+FF+ C +S E +V F++T +GL+L F +I VR+ +++LVR Sbjct: 71 APVSYFFEGLADPCDPDASSDPTEASVQQFLATSEGLELAAIFPKIQRAAVRRHVLQLVR 130 Query: 125 SIVSSEKKYR 134 S+ + Sbjct: 131 SMAEDPAEAE 140 >gi|85715705|ref|ZP_01046684.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] gi|85697358|gb|EAQ35237.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] Length = 149 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 68/131 (51%), Positives = 89/131 (67%), Gaps = 5/131 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN VD +VG R+R+RR++LGMSQE+LGE LG+TFQQVQKYEKG NRVGASR++ ISE+ Sbjct: 19 KSPNYVDKHVGSRVRMRRIMLGMSQEQLGEALGLTFQQVQKYEKGTNRVGASRIKQISEI 78 Query: 66 LESPISFFFDVSPTVCSDISS-----EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L P+SF F+ SPT S ++V F++T GL L R F +I D K+R+ ++ Sbjct: 79 LGVPVSFLFEGSPTRISATEDPGQVPSPDSVSSFVATTQGLALIRAFTRITDPKLRRSVV 138 Query: 121 ELVRSIVSSEK 131 LV I E Sbjct: 139 NLVEQIACRED 149 >gi|221232988|ref|YP_002515424.1| HTH transcriptional regulator [Caulobacter crescentus NA1000] gi|220962160|gb|ACL93516.1| HTH transcriptional regulator [Caulobacter crescentus NA1000] Length = 144 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 62/131 (47%), Positives = 89/131 (67%), Gaps = 2/131 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 ++ PNPVD++VG RIR+RR ILG+SQE+L E LG+TFQQVQKYE+G NRV AS+L Sbjct: 7 SDTERHPNPVDLHVGARIRMRRRILGVSQERLAEDLGLTFQQVQKYERGANRVSASKLYE 66 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNV--MDFISTPDGLQLNRYFIQIDDVKVRQKI 119 I+ L+SP+ +FF+ +E DF+ TP+GL+L F ++ KVR++I Sbjct: 67 IARSLQSPVDYFFEGLEDTTGGGMAERGEPFVHDFLMTPEGLELATLFPKVSRQKVRRRI 126 Query: 120 IELVRSIVSSE 130 +ELVRS+ + + Sbjct: 127 LELVRSMAAED 137 >gi|218681409|ref|ZP_03529306.1| transcriptional regulator, XRE family protein [Rhizobium etli CIAT 894] Length = 141 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 63/122 (51%), Positives = 84/122 (68%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGANRIGASRLQKISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L PI FFF+ I E + + F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPIGFFFE--NGGSGPIEGETSELNKFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|16124307|ref|NP_418871.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|13421145|gb|AAK22039.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] Length = 142 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 62/131 (47%), Positives = 89/131 (67%), Gaps = 2/131 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 ++ PNPVD++VG RIR+RR ILG+SQE+L E LG+TFQQVQKYE+G NRV AS+L Sbjct: 5 SDTERHPNPVDLHVGARIRMRRRILGVSQERLAEDLGLTFQQVQKYERGANRVSASKLYE 64 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNV--MDFISTPDGLQLNRYFIQIDDVKVRQKI 119 I+ L+SP+ +FF+ +E DF+ TP+GL+L F ++ KVR++I Sbjct: 65 IARSLQSPVDYFFEGLEDTTGGGMAERGEPFVHDFLMTPEGLELATLFPKVSRQKVRRRI 124 Query: 120 IELVRSIVSSE 130 +ELVRS+ + + Sbjct: 125 LELVRSMAAED 135 >gi|260426926|ref|ZP_05780905.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260421418|gb|EEX14669.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 123 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 75/122 (61%), Gaps = 1/122 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I++ L Sbjct: 1 MTHPVDVHVGKRIRHRRWLVGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIADAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + +SFFF+ T S D + + L L R + I + + R+++ EL R + Sbjct: 61 DVSVSFFFEGLETEQDAPVSAAAMPSDILGDKEALDLVRSYYAIPENQ-RRRLFELARVL 119 Query: 127 VS 128 Sbjct: 120 SD 121 >gi|295688227|ref|YP_003591920.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430130|gb|ADG09302.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 144 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 56/140 (40%), Positives = 92/140 (65%), Gaps = 8/140 (5%) Query: 1 MVGNK--KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M + + PNPVD++VG R+R+RR ++G+SQE+L + LG+TFQQVQKYE+G NRV AS+ Sbjct: 1 MSEDTEGRRPNPVDLHVGGRVRMRRKLMGVSQEQLADSLGLTFQQVQKYERGANRVSASK 60 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVM------DFISTPDGLQLNRYFIQIDD 112 L I++ L+ P+SFFF+ S + +F++TP+GL+L F +I Sbjct: 61 LYDIAKTLQVPVSFFFEGLADPMSGAEIDATAQHAEKVVQEFLTTPEGLELAEVFPRIGR 120 Query: 113 VKVRQKIIELVRSIVSSEKK 132 +VR+++++LVR++ ++ Sbjct: 121 GRVRRQVLDLVRAMADEAQR 140 >gi|10954734|ref|NP_066669.1| hypothetical protein pRi1724_p089 [Agrobacterium rhizogenes] gi|8918734|dbj|BAA97799.1| riorf88 [Agrobacterium rhizogenes] gi|10567398|dbj|BAB16207.1| riorf88 [Agrobacterium rhizogenes] Length = 169 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 59/129 (45%), Positives = 85/129 (65%), Gaps = 4/129 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+P+D+ VG RIR RR +LGMSQ KL E LG+TFQQVQKYEKG NRVGASRL +++ V Sbjct: 33 KTPSPIDVEVGARIRTRRRVLGMSQAKLAEALGVTFQQVQKYEKGTNRVGASRLLNVANV 92 Query: 66 LESPISFFFDVSPTVCSDI----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 L P+S FF+ S+ E + F+ + +G LN F +I + VR++++ Sbjct: 93 LGVPVSSFFNSDTRDGQAERPRGSTAETELGAFVQSDEGRDLNGAFARIAEPAVRRQVVS 152 Query: 122 LVRSIVSSE 130 LV+++ ++E Sbjct: 153 LVKAMAATE 161 >gi|218458068|ref|ZP_03498159.1| probable transcriptional regulator protein [Rhizobium etli Kim 5] Length = 127 Score = 107 bits (266), Expect = 6e-22, Method: Composition-based stats. Identities = 62/122 (50%), Positives = 84/122 (68%), Gaps = 2/122 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+ FFF+ I E + + F+S+ +GL LN+ FI I+D +RQK++ L +S Sbjct: 64 LRVPVGFFFE--NGGAGPIEGETSELNKFLSSKEGLALNKAFIAIEDPNIRQKLVALAKS 121 Query: 126 IV 127 + Sbjct: 122 LA 123 >gi|222087623|ref|YP_002546160.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725071|gb|ACM28227.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 152 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 61/131 (46%), Positives = 93/131 (70%), Gaps = 5/131 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+PNP+D VG R+R+RR++LGMSQE+L + +G+TFQQVQKYEKG NR+GASRLQ I+ V Sbjct: 4 KVPNPIDAYVGSRVRMRRLMLGMSQERLADQIGVTFQQVQKYEKGTNRIGASRLQAIASV 63 Query: 66 LESPISFFFDVS-----PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L P++FFF T S ++ DF+++ +GL LN+ F++I+D VRQ ++ Sbjct: 64 LAVPVAFFFQQDNSQPLATDGLGAISGLEDLSDFLTSKEGLSLNKAFMKINDPSVRQSVL 123 Query: 121 ELVRSIVSSEK 131 L++S+ ++ + Sbjct: 124 MLIKSLANTAE 134 >gi|16127394|ref|NP_421958.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221236203|ref|YP_002518640.1| transcriptional regulator [Caulobacter crescentus NA1000] gi|13424834|gb|AAK25126.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220965376|gb|ACL96732.1| hypothetical transcriptional regulatory protein [Caulobacter crescentus NA1000] Length = 156 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 59/143 (41%), Positives = 93/143 (65%), Gaps = 8/143 (5%) Query: 1 MVGNK--KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M + PNPVD++VG R+R+RR +LG+SQE+L + LG+TFQQVQKYE+G NRV AS+ Sbjct: 14 MSEETEGRRPNPVDLHVGGRVRMRRKLLGVSQEQLADSLGLTFQQVQKYERGANRVSASK 73 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSE------ENNVMDFISTPDGLQLNRYFIQIDD 112 L I++ L+ P+SFFFD + ++ E V +F++TP+GL+L F +I Sbjct: 74 LYEIAKTLQVPVSFFFDGLADPMNGAEADDAGLHAEKVVQEFLTTPEGLELAEVFPRIAR 133 Query: 113 VKVRQKIIELVRSIVSSEKKYRT 135 +VR+++++LVR++ + Sbjct: 134 GRVRRQVLDLVRAMADEASRDGA 156 >gi|167643999|ref|YP_001681662.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167346429|gb|ABZ69164.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 144 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 62/132 (46%), Positives = 90/132 (68%), Gaps = 4/132 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V ++ PNPVD++VG RIR+RR ILG+SQE+L + LG+TFQQVQKYE+G NRV AS+L Sbjct: 5 VDQERHPNPVDLHVGARIRMRRKILGVSQERLADDLGLTFQQVQKYERGANRVSASKLYE 64 Query: 62 ISEVLESPISFFFDVSPTVCS----DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 I++ L+S +S+FF+ + E V DF+ TP+GL+L F +I +VR+ Sbjct: 65 IAKSLQSSVSYFFEGLADPTDLEGFSENGSEQFVHDFLMTPEGLELAALFPRIGKSRVRR 124 Query: 118 KIIELVRSIVSS 129 +I++LVRS+ Sbjct: 125 RILDLVRSMAED 136 >gi|167644800|ref|YP_001682463.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167347230|gb|ABZ69965.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 145 Score = 106 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 60/144 (41%), Positives = 93/144 (64%), Gaps = 8/144 (5%) Query: 1 MVGNK--KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M + PNPVD++VG R+R+RR +LG+SQE+L + LG+TFQQVQKYE+G NRV AS+ Sbjct: 1 MSEETEGRRPNPVDLHVGGRVRMRRKLLGVSQEQLADSLGLTFQQVQKYERGANRVSASK 60 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSE------ENNVMDFISTPDGLQLNRYFIQIDD 112 L I++ L+ P+SFFFD ++ E V +F++TP+GL+L F +I Sbjct: 61 LYEIAKTLQVPVSFFFDGLADPMDGSENDEIGQQAERIVQEFLTTPEGLELAEVFPKIGR 120 Query: 113 VKVRQKIIELVRSIVSSEKKYRTI 136 +VR+++++LVR++ + T Sbjct: 121 GRVRRQVLDLVRAMAEEAARTETA 144 >gi|126735102|ref|ZP_01750848.1| putative Cro/CI transcriptional regulator [Roseobacter sp. CCS2] gi|126715657|gb|EBA12522.1| putative Cro/CI transcriptional regulator [Roseobacter sp. CCS2] Length = 123 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 48/123 (39%), Positives = 77/123 (62%), Gaps = 1/123 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VGKRIR RR + G +Q++L E +GI FQQ+QKYE G+NRV ASRL I++VL Sbjct: 1 MKHPVDIHVGKRIRHRRWMNGTTQQQLAEAVGIKFQQIQKYETGMNRVSASRLWDIAKVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +SFFF+ ++ + D ++ + L L R + I + + R+++ +L R + Sbjct: 61 GVNVSFFFEGLDAQTDLDANNSDMPGDILTDKEALDLLRSYYAIPENQ-RRRLFDLARVL 119 Query: 127 VSS 129 + Sbjct: 120 SEA 122 >gi|114571577|ref|YP_758257.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114342039|gb|ABI67319.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 140 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 66/133 (49%), Positives = 91/133 (68%), Gaps = 4/133 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N + PNP+DI+VG RIRLRR +L MSQE+LG+ LG+TFQQVQKYE+G NRVGASRL +S Sbjct: 5 NPRGPNPIDIHVGSRIRLRRQLLKMSQERLGDDLGVTFQQVQKYERGANRVGASRLYRMS 64 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNV----MDFISTPDGLQLNRYFIQIDDVKVRQKI 119 VLE P+ FFF+ + E++ DFI + DG+ L F +I D KVR+++ Sbjct: 65 RVLEVPVQFFFEGMGERSTMTGMAEDDQTPIVYDFIRSADGVSLAESFSRIKDAKVRKRV 124 Query: 120 IELVRSIVSSEKK 132 +ELVR++ + + Sbjct: 125 LELVRTLADEDDE 137 >gi|148259042|ref|YP_001233169.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326402169|ref|YP_004282250.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146400723|gb|ABQ29250.1| transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] gi|325049030|dbj|BAJ79368.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 161 Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 62/140 (44%), Positives = 90/140 (64%), Gaps = 16/140 (11%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P+D++VG RIRLRR +LGMSQEKLG+ LG+TFQQVQKYE+GVNRVGASRL IS VL+ Sbjct: 18 PSPIDVHVGSRIRLRRTLLGMSQEKLGDALGLTFQQVQKYERGVNRVGASRLFDISRVLD 77 Query: 68 SPISFFFDVSPTVCSDISSEENNV----------------MDFISTPDGLQLNRYFIQID 111 PISFFFD P +++ D ++ + L+L R + +I Sbjct: 78 VPISFFFDDMPEGMNEMPMSGPRGRSNGLSEAQEPFGVGLDDHMTKRETLELVRAYYRIT 137 Query: 112 DVKVRQKIIELVRSIVSSEK 131 + VR+++ +L++S+ ++ Sbjct: 138 EPTVRKRMFDLIKSLAPADS 157 >gi|241258713|ref|YP_002978597.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863183|gb|ACS60846.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 152 Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 67/138 (48%), Positives = 96/138 (69%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K N +D VG RIR+RR +LGMSQE+LGE +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTANAIDSYVGARIRMRRQLLGMSQERLGEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFFDVSPTVC-----SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL++ SFFF+ + D+S+ V +F+ T +GL LNR F++I D +R+ Sbjct: 62 EVLQTSPSFFFEQENSEPLTLQGLDLSANMEPVAEFLRTKEGLVLNRAFLKIADSNIRET 121 Query: 119 IIELVRSIVSSEKKYRTI 136 +I LV+++ +E + T+ Sbjct: 122 VIALVKAMAQAESRGVTL 139 >gi|116249754|ref|YP_765592.1| putative HTH transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254402|emb|CAK04035.1| putative HTH transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 152 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 65/138 (47%), Positives = 94/138 (68%), Gaps = 5/138 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K N +D VG RIR+RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTANAIDSYVGARIRMRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFFDVSPTVC-----SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 EVL + SFFF+ + D+ + + V +F+ T +GL LNR F++I D +R+ Sbjct: 62 EVLHTSPSFFFEQENSEPLTLQGLDLPANMDPVAEFLRTKEGLVLNRAFLKIADSNIRET 121 Query: 119 IIELVRSIVSSEKKYRTI 136 +I LV+++ +E + T+ Sbjct: 122 VIALVKAMAQAESRGLTL 139 >gi|163737462|ref|ZP_02144879.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] gi|161388988|gb|EDQ13340.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] Length = 123 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 77/123 (62%), Gaps = 1/123 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L Sbjct: 1 MAHPVDVHVGKRIRHRRWLIGMTQQQLAELVGIKFQQIQKYETGANRVSASRLWDISDAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+SFFF+ + S + D + + L L R + I + + R+++ EL R + Sbjct: 61 SVPVSFFFEGLQDDDAPASDKAQVPDDLMGDKEALDLVRSYYAIPENQ-RRRLFELARVL 119 Query: 127 VSS 129 + Sbjct: 120 SDA 122 >gi|56697797|ref|YP_168167.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56679534|gb|AAV96200.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 123 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 49/122 (40%), Positives = 78/122 (63%), Gaps = 1/122 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKR+R RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I+E L Sbjct: 1 MTHPVDVHVGKRVRHRRWLIGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P+SFFF+ ++ + + D + + L L R + I + + R+++ EL R + Sbjct: 61 DVPVSFFFEGLEEAEKVVAEKPSVPADLMGDKEALDLVRSYYAIPENQ-RRRLFELARVL 119 Query: 127 VS 128 Sbjct: 120 SD 121 >gi|167646240|ref|YP_001683903.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167348670|gb|ABZ71405.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 136 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 48/131 (36%), Positives = 84/131 (64%), Gaps = 4/131 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 P+PVD++VG+RIRLRR + G SQ ++ + LG+TFQQ+QKYE+G NR+ AS+LQ ++ Sbjct: 2 TNASPHPVDLHVGQRIRLRRKLAGASQTQVADALGLTFQQLQKYERGTNRISASKLQALA 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNV---MDFISTPDGLQLNRYFIQIDDVKVRQKII 120 L PI++FF+ ++ ++ F+++ +G++L F +I + R +I+ Sbjct: 62 LHLRVPINWFFEGLEEPTAEDAAINRRQTAVDAFLASREGVELALAFPRIGSGQ-RNQIL 120 Query: 121 ELVRSIVSSEK 131 LVR++ + E+ Sbjct: 121 ALVRTLAAEEE 131 >gi|315497219|ref|YP_004086023.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315415231|gb|ADU11872.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 139 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 59/139 (42%), Positives = 87/139 (62%), Gaps = 7/139 (5%) Query: 1 MVGNKKI---PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M N K PNPVD++VG R+R+RR LGMSQE L E + +TFQQVQKYE+G NR+ AS Sbjct: 1 MDENSKTDRSPNPVDLHVGARVRMRRKFLGMSQEALAETISLTFQQVQKYERGSNRISAS 60 Query: 58 RLQHISEVLESPISFFFDVSPTVCS----DISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 +L IS L++P+++FF+ + S E V F+ T +G++L F +I + Sbjct: 61 KLHEISRALKAPVAYFFEGYGESEAVEGFSESQSEQFVHGFLMTTEGIELAEAFPRIKNA 120 Query: 114 KVRQKIIELVRSIVSSEKK 132 K R++I+ELVR++ + Sbjct: 121 KHRRRILELVRALAEDSED 139 >gi|170741362|ref|YP_001770017.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168195636|gb|ACA17583.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 142 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 56/136 (41%), Positives = 88/136 (64%), Gaps = 5/136 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK P+P+D +VG R+R+RR+++G+SQEKLG+ LG+TFQQ+QKYEKG NR+ ASRLQ I+E Sbjct: 6 KKAPDPIDRHVGHRVRVRRLLMGVSQEKLGDALGVTFQQIQKYEKGANRISASRLQQIAE 65 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVM-----DFISTPDGLQLNRYFIQIDDVKVRQKI 119 +L P+ FF++ +P + E + D T LQL R F +++D +R+++ Sbjct: 66 MLGVPVGFFYEGAPRSENGHDEERGDAARAPSVDLFWTSQDLQLVRAFQRVNDPLLRRRV 125 Query: 120 IELVRSIVSSEKKYRT 135 + LV ++ + Sbjct: 126 VSLVEAMGGGKDAVVE 141 >gi|114705364|ref|ZP_01438272.1| dna-binding protein [Fulvimarina pelagi HTCC2506] gi|114540149|gb|EAU43269.1| dna-binding protein [Fulvimarina pelagi HTCC2506] Length = 138 Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 76/138 (55%), Positives = 106/138 (76%), Gaps = 5/138 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NKK+PNP+DI+VG R+RLRR +L +SQEKLGE LGITFQQVQKYEKG NR+GASRLQ Sbjct: 1 MPVNKKMPNPIDIHVGSRVRLRRTMLSLSQEKLGEALGITFQQVQKYEKGTNRIGASRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCS-----DISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 ISEVL+ P++FFF+ +PT + + ++DF+ST +GLQLN+ FI+I + KV Sbjct: 61 RISEVLKVPVAFFFEDAPTNGNTVTGMSEPHGGDYMVDFLSTSEGLQLNKAFIKIGNQKV 120 Query: 116 RQKIIELVRSIVSSEKKY 133 R+++++LVRS+ +++ Sbjct: 121 RRRVVDLVRSLAENDEDD 138 >gi|23011267|ref|ZP_00051678.1| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 160 Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats. Identities = 54/131 (41%), Positives = 80/131 (61%), Gaps = 13/131 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D++VG R+RLRR +LGMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL+ P+ Sbjct: 3 IDVHVGGRMRLRRTLLGMSQEKLGEAIGLTFQQVQKYERGANRIGASRLFDLSRVLDVPV 62 Query: 71 SFFFDVSPTVCSD-------------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 S+FFD D ++ + L+L R + I D +VR+ Sbjct: 63 SYFFDDMADGVQAQSPVNIIKGSVGLSEEPATFEADPMTKRETLELVRAYYNITDPQVRK 122 Query: 118 KIIELVRSIVS 128 ++ EL +++ + Sbjct: 123 RVYELAKALAA 133 >gi|197103164|ref|YP_002128542.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196480440|gb|ACG79967.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 171 Score = 103 bits (256), Expect = 8e-21, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 80/136 (58%), Gaps = 5/136 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P+P+D++VG R+RLRR LG++Q+ L E L +TFQQVQKYE+G NR+ AS L Sbjct: 16 MARADTGPDPIDVHVGLRVRLRRKALGLTQQSLAEALDLTFQQVQKYERGANRISASTLF 75 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNV-----MDFISTPDGLQLNRYFIQIDDVKV 115 IS+VLE P+S+FFD V D + P+G L F+ I + Sbjct: 76 RISQVLEVPVSYFFDGLHDPAKVAGERFAQVYDTVLQDLLLEPNGPALAEAFLSIRRRGI 135 Query: 116 RQKIIELVRSIVSSEK 131 R+ + +LVR+I ++++ Sbjct: 136 RKSVTDLVRAIAANDE 151 >gi|296532209|ref|ZP_06894960.1| cro/CI family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296267465|gb|EFH13339.1| cro/CI family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 149 Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 60/131 (45%), Positives = 85/131 (64%), Gaps = 11/131 (8%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P+D++VG R+RLRR +LGMSQEKLGE LG+TFQQVQKYE+GVNR+GASRL ++ VL+ Sbjct: 16 PSPIDVHVGSRVRLRRTLLGMSQEKLGEALGLTFQQVQKYERGVNRIGASRLFDLARVLD 75 Query: 68 SPISFFFDVSPTVCSD-----------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 PI FFFD P +E D + + L+L R + +I + VR Sbjct: 76 VPIGFFFDDMPDAMGGQTALRARIGGFAEQQEGFEDDTLHKRETLELVRAYYRITEPSVR 135 Query: 117 QKIIELVRSIV 127 +++ EL++S+ Sbjct: 136 KRVFELIKSLA 146 >gi|85706845|ref|ZP_01037936.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85668638|gb|EAQ23508.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 124 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 50/123 (40%), Positives = 76/123 (61%), Gaps = 2/123 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I+E L Sbjct: 1 MPHPVDVHVGKRIRHRRWLVGMTQQQLAESVGIKFQQIQKYETGANRVSASRLWDIAESL 60 Query: 67 ESPISFFFDVSP-TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + ISFFF+ + + D + + L L R + I + + R+++ +L R Sbjct: 61 DVTISFFFEGLEQDGGVEREKSDPARADLMGDKEALDLVRSYYAIPENQ-RRRLFDLARV 119 Query: 126 IVS 128 + Sbjct: 120 LSE 122 >gi|144900588|emb|CAM77452.1| transcriptional regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 160 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 61/136 (44%), Positives = 84/136 (61%), Gaps = 9/136 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNP+D++VG R+RLRR +LGMSQEKLGE LG+TFQQVQKYE+G NRVGASRL +S VL Sbjct: 24 KPNPIDVHVGNRVRLRRTLLGMSQEKLGEALGLTFQQVQKYERGANRVGASRLYDLSRVL 83 Query: 67 ESPISFFFDVSPTVCSDIS---------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + P+S+FFD S + ++ + L+L R + +I D VR+ Sbjct: 84 DVPVSYFFDDMNDETMAASPRHMVRATEDPPESEEAILAQRETLELVRAYTRIKDPNVRR 143 Query: 118 KIIELVRSIVSSEKKY 133 ++ EL R++ E Sbjct: 144 QVQELARTLAVPEDSE 159 >gi|84515302|ref|ZP_01002664.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] gi|84510585|gb|EAQ07040.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] Length = 123 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 49/123 (39%), Positives = 77/123 (62%), Gaps = 1/123 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD+ VGKRIR RR + G +Q++L E +GI FQQ+QKYE G+NRV ASRL IS VL Sbjct: 1 MKHPVDVYVGKRIRHRRWMNGTTQQQLAENVGIKFQQIQKYETGMNRVSASRLWDISNVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+SFFF+ + + + D ++ + L+L R + I + + R+++ +L R + Sbjct: 61 GVPVSFFFEGYDAQPAVETRISDMPGDILTDKEALELLRSYYAIPENQ-RRRLFDLARVL 119 Query: 127 VSS 129 + Sbjct: 120 SEA 122 >gi|89053723|ref|YP_509174.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88863272|gb|ABD54149.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 126 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 51/125 (40%), Positives = 83/125 (66%), Gaps = 3/125 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++G +Q++L E +GI FQQ+QKYE G+NRV ASRL I E L Sbjct: 1 MTHPVDVHVGKRIRHRRWMVGRTQQQLAETVGIKFQQIQKYETGMNRVSASRLWDIGEAL 60 Query: 67 ESPISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + P+++FF+ S V SD ++ E D ++ + L+L R + I + + R+++ +L R Sbjct: 61 DVPVAYFFEGVGSEEVASDTATGEALPGDLLADREALELVRSYYAIPENQ-RRRLFDLAR 119 Query: 125 SIVSS 129 + + Sbjct: 120 VLSDA 124 >gi|288959693|ref|YP_003450034.1| HTH-type transcriptional regulator [Azospirillum sp. B510] gi|288912001|dbj|BAI73490.1| HTH-type transcriptional regulator [Azospirillum sp. B510] Length = 164 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 60/131 (45%), Positives = 87/131 (66%), Gaps = 13/131 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNP+D++VG R+RLRR +LGMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL Sbjct: 22 KPNPIDVHVGSRVRLRRTLLGMSQEKLGEAIGLTFQQVQKYERGANRIGASRLFDLSRVL 81 Query: 67 ESPISFFFDVSPTVCSDISSEENN-------------VMDFISTPDGLQLNRYFIQIDDV 113 + P+SFFFD P + E+++ D ++ + L+L R + +I+D Sbjct: 82 DVPVSFFFDDMPAEAAAARVEDDDEAGASDERSANTYEPDPMAKRETLELVRAYYKINDP 141 Query: 114 KVRQKIIELVR 124 VR+++ EL + Sbjct: 142 SVRKRLFELTK 152 >gi|332716362|ref|YP_004443828.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325063047|gb|ADY66737.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 146 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 59/133 (44%), Positives = 84/133 (63%), Gaps = 4/133 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K+P+P+D++VG +IR+RR LGMSQ L LGITFQQVQKYEKG NRVGASRLQ Sbjct: 1 MMQA-KLPSPIDVHVGTQIRMRRKSLGMSQSALAGRLGITFQQVQKYEKGANRVGASRLQ 59 Query: 61 HISEVLESPISFFFDVSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 I+ VL +S F + + + N + F+++ +G LN+ F +I VR+ Sbjct: 60 AIASVLGVDVSSLFANATPDVGNANPALGTINAMQSFVASNEGFSLNQAFARIKSATVRK 119 Query: 118 KIIELVRSIVSSE 130 I+ LV S+ ++E Sbjct: 120 SIVALVTSLAATE 132 >gi|254464668|ref|ZP_05078079.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206685576|gb|EDZ46058.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 123 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 77/123 (62%), Gaps = 1/123 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L Sbjct: 1 MAHPVDVHVGKRIRHRRWLIGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDISDAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E P+SFFF+ + + D + + L L R + I + + R+++ EL R + Sbjct: 61 EVPVSFFFEGLQEEGKAPAEKSAVPEDLMGDKEALDLVRSYYAIPENQ-RRRLFELARVL 119 Query: 127 VSS 129 + Sbjct: 120 SDA 122 >gi|99081750|ref|YP_613904.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038030|gb|ABF64642.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 123 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 51/122 (41%), Positives = 75/122 (61%), Gaps = 1/122 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L Sbjct: 1 MAHPVDIHVGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDISDAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + ISFFF+ + + D + + L L R + I + + R+++ EL R + Sbjct: 61 DVNISFFFEGLQDETKSVPDKARVPADLMGDKEALDLVRSYYAIPENQ-RRRLFELARVL 119 Query: 127 VS 128 Sbjct: 120 SD 121 >gi|149203704|ref|ZP_01880673.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149142821|gb|EDM30863.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 124 Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats. Identities = 50/123 (40%), Positives = 76/123 (61%), Gaps = 2/123 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I+E L Sbjct: 1 MPHPVDVHVGKRIRHRRWLVGMTQQQLAESVGIKFQQIQKYETGANRVSASRLWDIAESL 60 Query: 67 ESPISFFFDVSP-TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + ISFFF+ + + D + + L L R + I + + R+++ +L R Sbjct: 61 DVEISFFFEGLDQEGGVEREKSDPARADLMGDKEALDLVRSYYAIPENQ-RRRLFDLARV 119 Query: 126 IVS 128 + Sbjct: 120 LSE 122 >gi|260432963|ref|ZP_05786934.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260416791|gb|EEX10050.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 123 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 47/122 (38%), Positives = 77/122 (63%), Gaps = 1/122 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VD++VGKR+R RR ++GM+Q++L + +GI FQQ+QKYE G NR+ ASRL I+E L Sbjct: 1 MTHHVDVHVGKRVRHRRWLIGMTQQQLAQQVGIKFQQIQKYETGANRISASRLWDIAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P+SFFF+ S +++ D + + L L R + I + + R+++ EL R + Sbjct: 61 DVPVSFFFEGLEETQKADSDKQSVPADLMGDKEALDLVRSYYAIPENQ-RRRLFELARVL 119 Query: 127 VS 128 Sbjct: 120 SD 121 >gi|209544249|ref|YP_002276478.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209531926|gb|ACI51863.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 174 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 56/144 (38%), Positives = 88/144 (61%), Gaps = 21/144 (14%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD++VG RIRLRR ++G+SQE+LG+ LG+TFQQVQKYE+G NRV ASRL +SEVL+ Sbjct: 31 PSPVDVHVGGRIRLRRTLMGLSQERLGDALGLTFQQVQKYERGTNRVSASRLYELSEVLD 90 Query: 68 SPISFFFDVSPT---------------------VCSDISSEENNVMDFISTPDGLQLNRY 106 P+SFFFD + + + + + S + ++L R Sbjct: 91 VPVSFFFDGLDSGQAGSKATNAIPGFAQAQEAFGGAPEGAAPASEIALFSRRETIELVRI 150 Query: 107 FIQIDDVKVRQKIIELVRSIVSSE 130 + +I+D +R+++++L+R + E Sbjct: 151 YYRIEDPAMRRRVLDLIRMMAPPE 174 >gi|294676430|ref|YP_003577045.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294475250|gb|ADE84638.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 120 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 48/122 (39%), Positives = 80/122 (65%), Gaps = 4/122 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++G++Q++L + +GI FQQ+QKYE G+NRV ASRL I++ L Sbjct: 1 MKHPVDVHVGKRIRHRRWLVGVTQQQLADKVGIKFQQIQKYETGMNRVSASRLWDIADAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P+SFFF+ + +++E D S + L L R + I + + R+++ EL + + Sbjct: 61 DVPVSFFFEGLSGEDPNTAAQE---GDLFSDKEALALVRSYYAIPEAQ-RRRLFELAKVL 116 Query: 127 VS 128 Sbjct: 117 SD 118 >gi|15891368|ref|NP_357040.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15159757|gb|AAK89825.1| transcriptional regulator, HTH family [Agrobacterium tumefaciens str. C58] Length = 145 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 59/128 (46%), Positives = 81/128 (63%), Gaps = 3/128 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+P+P+D++VG +IR+RR LGMSQ L LGITFQQVQKYEKG NRVGASRLQ I+ + Sbjct: 4 KLPSPIDVHVGTQIRMRRKSLGMSQSALAGRLGITFQQVQKYEKGANRVGASRLQAIASI 63 Query: 66 LESPISFFF---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 L +S F + N + F+++ +G LN+ F +I V VR+ I+ L Sbjct: 64 LGVEVSSLFANATPDGGAANPALGTINAMQTFVASNEGFSLNQAFSRIKSVAVRRSIVAL 123 Query: 123 VRSIVSSE 130 V S+ +SE Sbjct: 124 VTSLAASE 131 >gi|227819384|ref|YP_002823355.1| XRE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338383|gb|ACP22602.1| probable transcriptional regulator protein, XRE familiy [Sinorhizobium fredii NGR234] Length = 150 Score = 101 bits (250), Expect = 4e-20, Method: Composition-based stats. Identities = 63/136 (46%), Positives = 90/136 (66%), Gaps = 4/136 (2%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK PNP+D VG R+R+RR+++GMSQEKL + LGITFQQVQKYEKG NR+GASRLQ I++ Sbjct: 2 KKNPNPIDTFVGSRVRMRRLMVGMSQEKLADGLGITFQQVQKYEKGTNRIGASRLQAIAD 61 Query: 65 VLESPISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +L SFFF + E + + F+++ +G+ LNR F++I D +R+KII Sbjct: 62 ILGVHPSFFFQQDEKAQSRETAADVHESHEISSFVASKEGIALNRAFLKIVDPVLRKKII 121 Query: 121 ELVRSIVSSEKKYRTI 136 LV ++ S + + Sbjct: 122 ALVAAMAHSGEIEQAA 137 >gi|162147196|ref|YP_001601657.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785773|emb|CAP55344.1| putative transcriptional Regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 174 Score = 101 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 56/144 (38%), Positives = 88/144 (61%), Gaps = 21/144 (14%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD++VG RIRLRR ++G+SQE+LG+ LG+TFQQVQKYE+G NRV ASRL +SEVL+ Sbjct: 31 PSPVDVHVGGRIRLRRTLMGLSQERLGDALGLTFQQVQKYERGTNRVSASRLYELSEVLD 90 Query: 68 SPISFFFDVSPT---------------------VCSDISSEENNVMDFISTPDGLQLNRY 106 P+SFFFD + + + + + S + ++L R Sbjct: 91 VPVSFFFDGLDSGQAGSKATNAIPGFAQAQEAFGGAPEGAAPASEIALFSRREMIELVRI 150 Query: 107 FIQIDDVKVRQKIIELVRSIVSSE 130 + +I+D +R+++++L+R + E Sbjct: 151 YYRIEDPAMRRRVLDLIRMMAPPE 174 >gi|16520003|ref|NP_444123.1| transcriptional regulator (Cro/CI family) [Sinorhizobium fredii NGR234] gi|2496761|sp|P55681|Y4WC_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator y4wC gi|2182692|gb|AAB91910.1| transcriptional regulator (Cro/CI family) [Sinorhizobium fredii NGR234] Length = 143 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 59/136 (43%), Positives = 88/136 (64%), Gaps = 7/136 (5%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 ++ PN VD +VG+RIR RR MSQ LGE +G+TFQQVQKYEKGVNRVGA RLQ I Sbjct: 8 QTRRKPNAVDAHVGQRIRQRREWQNMSQTTLGEAIGVTFQQVQKYEKGVNRVGAGRLQQI 67 Query: 63 SEVLESPISFFFDV-------SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 S+ L+ S+FF+ S+ + V++F+ + +G++L R F ++ D +V Sbjct: 68 SKALKVEPSYFFEDTLNKIRSEERSASNQINIPPEVVEFVVSKEGIELIRAFSRVGDYRV 127 Query: 116 RQKIIELVRSIVSSEK 131 R++I+ LV+S+ + E+ Sbjct: 128 RRRIVMLVKSLGAHER 143 >gi|254511979|ref|ZP_05124046.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221535690|gb|EEE38678.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 123 Score = 100 bits (248), Expect = 7e-20, Method: Composition-based stats. Identities = 49/122 (40%), Positives = 77/122 (63%), Gaps = 1/122 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VD++VGKR+R RR ++GM+Q++L + +GI FQQ+QKYE G NRV ASRL I+E L Sbjct: 1 MTHHVDVHVGKRVRHRRWLIGMTQQQLAQQVGIKFQQIQKYETGANRVSASRLWDIAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E P+SFFF+ S +++ D + + L L R + I + + R+++ EL R + Sbjct: 61 EVPVSFFFEGLEETQKSDSDKKSVPADLMGDKEALDLVRSYYAIPENQ-RRRLFELARVL 119 Query: 127 VS 128 Sbjct: 120 SD 121 >gi|197105969|ref|YP_002131346.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479389|gb|ACG78917.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 143 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 54/122 (44%), Positives = 83/122 (68%), Gaps = 2/122 (1%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD +VG RIR+RR +G+SQE+L E LGITFQQVQKYE+G NRV AS+L I++ L+ Sbjct: 23 PHPVDRHVGLRIRMRRKEIGVSQERLAEALGITFQQVQKYERGANRVSASKLWEIAQALK 82 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + +++F++ ++ N DF+ T +GL+L F +I +R+K++ELVR++ Sbjct: 83 TGVTYFYEGLND--HELGDAGRNAQDFMLTGEGLELMSTFPRIAQPALRRKLVELVRAMA 140 Query: 128 SS 129 Sbjct: 141 EE 142 >gi|83311372|ref|YP_421636.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82946213|dbj|BAE51077.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 155 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 58/129 (44%), Positives = 79/129 (61%), Gaps = 13/129 (10%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNPVD++VG R+RLRR +LGMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL Sbjct: 16 APNPVDVHVGGRMRLRRTLLGMSQEKLGEAIGLTFQQVQKYERGANRIGASRLFDLSRVL 75 Query: 67 ESPISFFFDVSPTVCSD-------------ISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + P+S+FFD D ++ + L+L R + I D Sbjct: 76 DVPVSYFFDDMADGVQAQSPVNIIKGSVGLSEEPATFEADPMTKRETLELVRAYYNITDP 135 Query: 114 KVRQKIIEL 122 +VR+++ EL Sbjct: 136 QVRKRVYEL 144 >gi|222102467|ref|YP_002539506.1| transcriptional regulator [Agrobacterium vitis S4] gi|221739068|gb|ACM39801.1| transcriptional regulator [Agrobacterium vitis S4] Length = 138 Score = 99.9 bits (247), Expect = 9e-20, Method: Composition-based stats. Identities = 56/131 (42%), Positives = 84/131 (64%), Gaps = 4/131 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + +D++VG RIRL+R++ GMSQ+ L E +G+TFQQVQKYE G NR+G+SRLQ ++ + Sbjct: 8 KASDVIDVHVGCRIRLQRVLKGMSQKALAEGVGVTFQQVQKYETGTNRIGSSRLQAVARI 67 Query: 66 LESPISFFFDVSPTVCSDISSEE----NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 L P++FFF+ P S E + FI + +GL LN F +I D VR+K+I Sbjct: 68 LSVPVAFFFEDGPQSSSPSQLPEAGIGKEITRFIRSEEGLALNLAFTKIQDANVRRKVIG 127 Query: 122 LVRSIVSSEKK 132 LV+++ + Sbjct: 128 LVKTLAKEHAE 138 >gi|86140033|ref|ZP_01058597.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85823283|gb|EAQ43494.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 122 Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 2/122 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++G +Q++L E +GI FQQ+QKYE G NRV ASRL IS+ + Sbjct: 1 MAHPVDVHVGKRIRHRRWLIGKTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDISDAM 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P+SFFF+ D D + + L L R + I + + R+++ EL R + Sbjct: 61 DVPVSFFFEGLDEEAKDGGKSA-VPDDLMGDKEALDLVRSYYAIPENQ-RRRLFELARVL 118 Query: 127 VS 128 Sbjct: 119 SD 120 >gi|260574596|ref|ZP_05842599.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] gi|259023013|gb|EEW26306.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] Length = 120 Score = 99.9 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 49/123 (39%), Positives = 78/123 (63%), Gaps = 4/123 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD +VGKRIR RR ++GM+Q++L + +GI FQQ+QKYE G+NRV ASRL I+E L Sbjct: 1 MKHPVDAHVGKRIRHRRWMVGMTQQQLADRVGIKFQQIQKYETGMNRVSASRLWDIAETL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 ISFFF+ + + DF++ + L+L R + I + + R+++ +L R + Sbjct: 61 GVAISFFFEGIDESRE---ASKTMDGDFLADKEALELVRSYYSIPEAQ-RRRLFDLARVL 116 Query: 127 VSS 129 + Sbjct: 117 SDA 119 >gi|114570052|ref|YP_756732.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114340514|gb|ABI65794.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 136 Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 45/126 (35%), Positives = 76/126 (60%), Gaps = 1/126 (0%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + P +D +VG R+R+ R+ +SQE LGE G++F Q+QKYE+G R+ ASRL ++ Sbjct: 9 QFPLQIDQHVGARLRVGRIEFCLSQEALGERFGVSFHQIQKYERGAYRISASRLFVLANA 68 Query: 66 LESPISFFFDV-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L P+ FFFD SE+ ++ FI++ G+ L F +I + ++RQ++I+LV Sbjct: 69 LLVPVQFFFDGLDDDGPQSAGSEDTDLYRFIASSAGVTLALAFSRIGNHEIRQRVIDLVH 128 Query: 125 SIVSSE 130 ++ + Sbjct: 129 ALAKQD 134 >gi|126739240|ref|ZP_01754934.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126719857|gb|EBA16565.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 122 Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 50/123 (40%), Positives = 74/123 (60%), Gaps = 2/123 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++G +Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L Sbjct: 1 MAHPVDVHVGKRIRHRRWLIGKTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDISDAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E P+SFFF+ D + + L L R + I + + R+++ EL R + Sbjct: 61 EVPVSFFFEGLEEDGKAAG-NTAVPDDLMGDKEALDLVRSYYSIPENQ-RRRLFELARVL 118 Query: 127 VSS 129 + Sbjct: 119 SDA 121 >gi|83310845|ref|YP_421109.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82945686|dbj|BAE50550.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 167 Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 57/134 (42%), Positives = 82/134 (61%), Gaps = 14/134 (10%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNPVD++VG R+RLRR +LGMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL Sbjct: 28 APNPVDVHVGGRMRLRRTLLGMSQEKLGEAIGLTFQQVQKYERGANRIGASRLFDLSRVL 87 Query: 67 ESPISFFFDVSPT-------------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + PIS+FFD + D + + L+L R + ++ Sbjct: 88 DVPISYFFDDMADQVQAQSPVNIIKGSAEPSETPAGFEPDPMMKRETLELVRAYYRVP-E 146 Query: 114 KVRQKIIELVRSIV 127 + R++I +L++S+ Sbjct: 147 QQRRRIYDLIKSMA 160 >gi|144897602|emb|CAM74466.1| transcriptional regulator [Magnetospirillum gryphiswaldense MSR-1] Length = 149 Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 80/123 (65%), Gaps = 2/123 (1%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P+D +VG R+RLRR ++G+SQ +L + +G+TFQQVQKYE G NR+ ASRL HISE L+ Sbjct: 20 PDPIDTHVGARLRLRRTLMGLSQTELAKSVGLTFQQVQKYESGANRISASRLYHISEALD 79 Query: 68 SPISFFFDVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 P+SFFFD + + S+ +GL++ R + +I D +R+ + +L +S Sbjct: 80 VPVSFFFDDMSRSSGKYGLHEDAVAFSAPESSREGLEMMRNYHRITDEAIRRSVYDLTKS 139 Query: 126 IVS 128 + + Sbjct: 140 LAA 142 >gi|259416694|ref|ZP_05740614.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259348133|gb|EEW59910.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 124 Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 75/123 (60%), Gaps = 2/123 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L Sbjct: 1 MAHPVDIHVGKRIRHRRWLIGMTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDISDAL 60 Query: 67 ESPISFFFDVS-PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + ISFFF+ + + D + + L L R + I + + R+++ EL R Sbjct: 61 DVNISFFFEGLQDETAKVVPEKARVPADLMGDKEALDLVRSYYAIPENQ-RRRLFELARV 119 Query: 126 IVS 128 + Sbjct: 120 LSD 122 >gi|77462437|ref|YP_351941.1| XRE family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126461314|ref|YP_001042428.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|146276727|ref|YP_001166886.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|332560321|ref|ZP_08414643.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|77386855|gb|ABA78040.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides 2.4.1] gi|126102978|gb|ABN75656.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17029] gi|145554968|gb|ABP69581.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17025] gi|332278033|gb|EGJ23348.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 120 Score = 98.7 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 77/123 (62%), Gaps = 4/123 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD +VGKRIR RR ++GM+Q++L +C+GI FQQ+QKYE G+NRV ASRL I+E L Sbjct: 1 MKHPVDAHVGKRIRHRRWMVGMTQQQLADCVGIKFQQIQKYETGMNRVSASRLWDIAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 ISFFF+ E D I+ + L+L R + I + + R+++ +L R + Sbjct: 61 GVSISFFFEGLEGAGDQARQAE---GDRITDKEALELVRSYYAIPEAQ-RRRLFDLARVL 116 Query: 127 VSS 129 + Sbjct: 117 SEA 119 >gi|83311180|ref|YP_421444.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82946021|dbj|BAE50885.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 175 Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 58/134 (43%), Positives = 84/134 (62%), Gaps = 11/134 (8%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 NP+D++VG RIRLRR +LGMSQEKLGECLG+TFQQVQKYE+G NRVGASRL +S VL+ Sbjct: 42 ANPIDVHVGARIRLRRTLLGMSQEKLGECLGLTFQQVQKYERGANRVGASRLFDLSRVLD 101 Query: 68 SPISFFFDVSPTVCSDISSEE-----------NNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + +FF+ S E D ++ + L+L R + I+D KVR Sbjct: 102 VRVGYFFEEISATAQAASPVEVIRGNVTKSVDVPDDDPMTKRETLELVRAYFSINDPKVR 161 Query: 117 QKIIELVRSIVSSE 130 +++ + +++ ++ Sbjct: 162 DQVLSMAKALGGAK 175 >gi|330991161|ref|ZP_08315114.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp. SXCC-1] gi|329761747|gb|EGG78238.1| Putative HTH-type transcriptional regulator [Gluconacetobacter sp. SXCC-1] Length = 158 Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 88/157 (56%), Gaps = 33/157 (21%) Query: 1 MVGNKKIP---NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M G K+P NPVD++VG RIRLRR +LGMSQE+LG LG+TFQQVQKYE+G NRVGAS Sbjct: 1 MTG--KMPTTSNPVDVHVGNRIRLRRTLLGMSQERLGNALGLTFQQVQKYERGRNRVGAS 58 Query: 58 RLQHISEVLESPISFFFDVSPTVCS--------------------------DISSEENNV 91 RL ++ VL+ P++FFF P D+ N Sbjct: 59 RLYDLACVLDVPVAFFFAGLPDPVGSMEPCPSGPEGVSEPAVPLGGSMAVGDMPPPATNT 118 Query: 92 MDFI--STPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 D S + ++L R + I+D R+++++LVRS+ Sbjct: 119 GDLALFSRRETIELVRAYYGIEDSSTRRRVLDLVRSM 155 >gi|254461884|ref|ZP_05075300.1| transcriptional regulator, XRE family [Rhodobacterales bacterium HTCC2083] gi|206678473|gb|EDZ42960.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium HTCC2083] Length = 135 Score = 98.4 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 79/134 (58%), Gaps = 7/134 (5%) Query: 1 MVGNKK----IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 M+ +K + +PVD++VGKRIR RR ++G++Q++L E +GI FQQ+QKYE G NRV A Sbjct: 1 MLHREKKGSIMAHPVDVHVGKRIRHRRWLVGVTQQRLAETVGIKFQQIQKYETGANRVSA 60 Query: 57 SRLQHISEVLESPISFFFDV--SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 SRL I+E LE +SFFF + + D ++ + L L R + I + + Sbjct: 61 SRLWDIAESLEVDVSFFFSGLQNEDAAIGDAESGAVPSDILNDKEALDLVRSYYAIPEEQ 120 Query: 115 VRQKIIELVRSIVS 128 R+++ +L R + Sbjct: 121 -RRRLFDLARVLSD 133 >gi|222109145|ref|YP_002551410.1| transcriptional regulator Cro/CI family [Agrobacterium vitis S4] gi|221738419|gb|ACM39284.1| transcriptional regulator Cro/CI family [Agrobacterium vitis S4] Length = 141 Score = 98.0 bits (242), Expect = 3e-19, Method: Composition-based stats. Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 4/138 (2%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ VD+ VG+ IR RRMI G+SQ LG +G+TFQQVQKYEKG NRV AS L I+ Sbjct: 2 KDEPHAVDVAVGRAIRKRRMINGVSQSDLGARIGVTFQQVQKYEKGTNRVSASMLMEIAC 61 Query: 65 VLESPISFFFDV-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L + FFD + F T + + LN+ F QI+D +R+KI++LV Sbjct: 62 ALHVDVRSFFDGIDAPSGKEPLHHTATPAAFSITRETVALNQAFAQINDALLRRKIVDLV 121 Query: 124 RSIVSSEKKYRTIEEECM 141 R++ SS T E+E + Sbjct: 122 RAVASS---SSTSEDELL 136 >gi|329847816|ref|ZP_08262844.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328842879|gb|EGF92448.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 138 Score = 98.0 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 51/122 (41%), Positives = 82/122 (67%), Gaps = 1/122 (0%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PN VD++VG R+RLRR +LG+SQ+ L + +TFQQVQKYE+G NR+ AS+L I++ L+ Sbjct: 14 PNKVDLHVGARVRLRRKLLGLSQDGLAARIDLTFQQVQKYERGSNRISASKLYEIAQALQ 73 Query: 68 SPISFFFDVSPTVCSDIS-SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + FF+ TV ++ E +V F+ TP+G++L F +I K+R++++ELV ++ Sbjct: 74 CKVEHFFEGLETVETEAPVQVEQDVNSFLCTPEGIELAGGFPKIRSAKLRRRVLELVNTL 133 Query: 127 VS 128 Sbjct: 134 AE 135 >gi|114762993|ref|ZP_01442423.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114544317|gb|EAU47325.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 127 Score = 98.0 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 75/126 (59%), Gaps = 5/126 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I++ L Sbjct: 1 MTHPVDVHVGKRIRHRRWLVGMTQQQLAEQVGIKFQQIQKYETGANRVSASRLWDIADAL 60 Query: 67 ESPISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 E P+SFFF+ + D + + L L R + I + + R+++ EL Sbjct: 61 EVPVSFFFEGIDAEQEAPEEAAAPAAAMPADILGDKEALDLVRSYYAIPENQ-RRRLFEL 119 Query: 123 VRSIVS 128 R + Sbjct: 120 ARVLSD 125 >gi|18071257|ref|NP_542325.1| hypothetical protein PBC5p65 [Sinorhizobium phage PBC5] gi|17940363|gb|AAL49607.1|AF448724_44 unknown [Sinorhizobium phage PBC5] Length = 135 Score = 97.6 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 67/119 (56%), Positives = 80/119 (67%), Gaps = 2/119 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PNP+D VG RIRLRR I+GMSQE L LGITFQQVQKYEKG NRVGASRLQ ISE Sbjct: 10 KKPNPIDTQVGARIRLRRNIIGMSQETLAAHLGITFQQVQKYEKGANRVGASRLQAISEA 69 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L+ S+FFD + VM FI++ +G+ LNR F +I D R KI++LV+ Sbjct: 70 LKVAPSYFFDKPEGATEANGGD--EVMSFIASSEGIALNRAFARIQDSATRHKIVDLVK 126 >gi|86360708|ref|YP_472596.1| Cro/CI family transcriptional regulator [Rhizobium etli CFN 42] gi|86284810|gb|ABC93869.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CFN 42] Length = 134 Score = 97.2 bits (240), Expect = 6e-19, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 84/134 (62%), Gaps = 1/134 (0%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P+ VD++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ Sbjct: 2 KEEPHAVDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAG 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L + FFD T + + + +F+ + +G+ LN F I + +R+KI++LV+ Sbjct: 62 ALNVDVRTFFDDLSTPVTANDNPAPS-EEFVISREGVLLNAAFFSIKNEALRKKILKLVQ 120 Query: 125 SIVSSEKKYRTIEE 138 +I +E+ E Sbjct: 121 AIAHTEQVDGEAAE 134 >gi|83311279|ref|YP_421543.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82946120|dbj|BAE50984.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 201 Score = 96.8 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 57/133 (42%), Positives = 83/133 (62%), Gaps = 11/133 (8%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 NP+D++VG RIRLRR +LGMSQEKLGECLG+TFQQVQKYE+G NRVGASRL +S VL+ Sbjct: 68 ANPIDVHVGARIRLRRTLLGMSQEKLGECLGLTFQQVQKYERGANRVGASRLFDLSRVLD 127 Query: 68 SPISFFFDVSPTVCSDISSEE-----------NNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + +FF+ + S E + ++ + L+L R + I D KVR Sbjct: 128 VRVGYFFEEISSTAQAASPVEVIRGNVTKAIDVADDNPMTKRETLELVRAYFSISDPKVR 187 Query: 117 QKIIELVRSIVSS 129 +++ + +++ + Sbjct: 188 DQVLSMAKALGGA 200 >gi|46201366|ref|ZP_00055177.2| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 137 Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 54/137 (39%), Positives = 85/137 (62%), Gaps = 13/137 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DI+VG R+RLRR ++GMSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL+ P+ Sbjct: 1 MDIHVGGRVRLRRTLMGMSQEKLGESIGLTFQQVQKYERGANRIGASRLFDLSRVLDVPV 60 Query: 71 SFFFDVSPTVCSD-------------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 SFFFD + + D ++ + L+L R + I D +VR+ Sbjct: 61 SFFFDDMAETVQEQSPVAVSRGASGLSEEPASFEADPMTKRETLELVRAYYAIIDPQVRR 120 Query: 118 KIIELVRSIVSSEKKYR 134 ++ +L +++ ++ + + Sbjct: 121 RVYDLAKALAATGETKK 137 >gi|254449883|ref|ZP_05063320.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] gi|198264289|gb|EDY88559.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] Length = 122 Score = 96.4 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 2/123 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRIR RR + G +Q+ L + +GI FQQ+QKYE G+NRV ASRL I+ L Sbjct: 1 MKHPVDVHVGKRIRHRRWVSGTTQQHLADQVGIKFQQIQKYETGMNRVSASRLWDIAHAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 ++FFF+ D ++ + L L R + I + + R+++ +L R + Sbjct: 61 GVEVAFFFEGLEGNLIG-KDIGGMPSDILTDKEALDLLRSYYAIPENQ-RRRLFDLARVL 118 Query: 127 VSS 129 + Sbjct: 119 SEA 121 >gi|119384129|ref|YP_915185.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119373896|gb|ABL69489.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 119 Score = 95.7 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 49/123 (39%), Positives = 79/123 (64%), Gaps = 5/123 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VD++VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G+NRV ASRL I++ + Sbjct: 1 MKHNVDVHVGKRIRHRRWMIGMTQQQLAEKVGIKFQQIQKYETGMNRVSASRLWDIAQAV 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P+SFFF+ + E D ++ + LQL R + + + + R++I EL R + Sbjct: 61 DVPVSFFFEGLEDGHVHNAVE----GDILADKEALQLVRAYYAMPEAQ-RRQIFELARVL 115 Query: 127 VSS 129 + Sbjct: 116 SDA 118 >gi|144901303|emb|CAM78167.1| transcriptional regulator, Cro/CI family [Magnetospirillum gryphiswaldense MSR-1] Length = 131 Score = 95.3 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 76/139 (54%), Gaps = 16/139 (11%) Query: 1 MVGNKKIP--------NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 M K P N D +VG RIR RR++LG+SQ+++ + +G+T+QQ KYE+G+N Sbjct: 1 MTEEKAPPISRPVNRANDTDRHVGTRIRERRIMLGLSQQQMADLIGVTYQQAHKYERGIN 60 Query: 53 RVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 R+ A RL I++VL P+S+FF+ + + L+L R F I + Sbjct: 61 RISAGRLYEIAQVLGVPVSYFFEGLDNQRATDLTAR--------QRMCLELARNFSSIQN 112 Query: 113 VKVRQKIIELVRSIVSSEK 131 K ++ + ++ R++ ++E Sbjct: 113 EKHQEALSQMARALAAAED 131 >gi|110679288|ref|YP_682295.1| Cro/CI family transcriptional regulator putative [Roseobacter denitrificans OCh 114] gi|109455404|gb|ABG31609.1| transcriptional regulator, Cro/CI family, putative [Roseobacter denitrificans OCh 114] Length = 125 Score = 95.3 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 48/124 (38%), Positives = 76/124 (61%), Gaps = 3/124 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VD++VGKRIR RR ++GM+Q+KL EC+GI FQQ+QKYE G NRV ASRL I++ L Sbjct: 1 MAHLVDVHVGKRIRQRRWLVGMTQQKLAECVGIKFQQIQKYETGANRVSASRLWDIADAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENN--VMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + ++FFF+ + E + D + + + L R + I + + R+++ EL R Sbjct: 61 DVDVAFFFEGLREEAGKDAPEPTSSVPADMMGDKEAMDLVRSYYAIPENQ-RRRLFELAR 119 Query: 125 SIVS 128 + Sbjct: 120 VLSD 123 >gi|116255803|ref|YP_771636.1| HTH family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115260451|emb|CAK03555.1| putative HTH family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 134 Score = 95.3 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 84/134 (62%), Gaps = 1/134 (0%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P+ VD++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ Sbjct: 2 KEEPHSVDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAG 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L+ + FFD + + + +F+ + +G+ LN F I + +R+KI++LV+ Sbjct: 62 ALKVDVRTFFDDL-STPDNANDNPAPSEEFVISREGVLLNAAFFSIKNEALRKKILKLVQ 120 Query: 125 SIVSSEKKYRTIEE 138 +I +E+ E Sbjct: 121 AIAHTEQVESEAAE 134 >gi|241667081|ref|YP_002985165.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862538|gb|ACS60203.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 134 Score = 94.9 bits (234), Expect = 3e-18, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 85/134 (63%), Gaps = 1/134 (0%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P+ VD++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ Sbjct: 2 KEEPHSVDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAG 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L+ + FFD + + + +F+ + +G+ LN F I + +R+KI++LV+ Sbjct: 62 ALKVDVRTFFDDL-STPDNANDNPAPSEEFVISREGVLLNAAFFSIKNEALRKKILKLVQ 120 Query: 125 SIVSSEKKYRTIEE 138 +I ++E+ E Sbjct: 121 AIANTEQLDTEAAE 134 >gi|83944525|ref|ZP_00956977.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] gi|83844631|gb|EAP82516.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] Length = 124 Score = 94.9 bits (234), Expect = 3e-18, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 2/123 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+ VD++VG+RIR RR + GM+Q++L E +GI FQQ+QKYE G NRV ASRL I+ L Sbjct: 1 MPHKVDVHVGQRIRQRRWLTGMTQQRLAELVGIKFQQIQKYETGANRVSASRLWDIAFAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFIS-TPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 +S FF+ +N+ +S + + L R + I + + R+++ EL R Sbjct: 61 NVDVSHFFEGLEAEKPQPEKALDNIPADLSGDKEAMDLIRSYYAIPENQ-RRRLFELARV 119 Query: 126 IVS 128 + Sbjct: 120 LSD 122 >gi|163733431|ref|ZP_02140874.1| transcriptional regulator, Cro/CI family, putative [Roseobacter litoralis Och 149] gi|161393219|gb|EDQ17545.1| transcriptional regulator, Cro/CI family, putative [Roseobacter litoralis Och 149] Length = 125 Score = 94.9 bits (234), Expect = 3e-18, Method: Composition-based stats. Identities = 48/124 (38%), Positives = 76/124 (61%), Gaps = 3/124 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VD++VGKRIR RR ++GM+Q+KL EC+GI FQQ+QKYE G NRV ASRL I++ L Sbjct: 1 MAHLVDVHVGKRIRQRRWLVGMTQQKLAECVGIKFQQIQKYETGANRVSASRLWDIADAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENN--VMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + ++FFF+ + E + D + + + L R + I + + R+++ EL R Sbjct: 61 DVDVAFFFEGLREEAGKDAPEPASSVPADMMGDKEAMDLVRSYYAIPENQ-RRRLFELAR 119 Query: 125 SIVS 128 + Sbjct: 120 VLSD 123 >gi|190895672|ref|YP_001985964.1| transcriptional regulator Cro/CI family [Rhizobium etli CIAT 652] gi|218658231|ref|ZP_03514161.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli IE4771] gi|190699617|gb|ACE93701.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CIAT 652] gi|327194885|gb|EGE61716.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CNPAF512] Length = 134 Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 85/134 (63%), Gaps = 1/134 (0%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P+ VD++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ Sbjct: 2 KEEPHAVDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAG 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L+ + FFD T + + + +F+ + +G+ LN F I + +R+KI++LV+ Sbjct: 62 ALKVDVRTFFDDLSTPDTANDNPAPS-EEFVISREGVLLNAAFFSIKNEALRKKILKLVQ 120 Query: 125 SIVSSEKKYRTIEE 138 +I +E+ E Sbjct: 121 AIAHTEQMDGEAAE 134 >gi|254559382|ref|YP_003066477.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|254266660|emb|CAX22437.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 158 Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats. Identities = 49/126 (38%), Positives = 77/126 (61%), Gaps = 4/126 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +D VG+RI++ R G++Q LG+ +G+TFQQVQKYE G+NRVGASRL I+ V Sbjct: 33 KRATDLDRLVGERIQVLRKSKGLTQTALGQAIGVTFQQVQKYENGMNRVGASRLSDIARV 92 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE +S F+D + V F+ T + L R F +I+D ++R++++ +VR+ Sbjct: 93 LEVRVSSFYDGDE----GEGEDRAEVFGFLRTHGAIDLLRAFSEIEDDQLRREVLAIVRT 148 Query: 126 IVSSEK 131 + E+ Sbjct: 149 VARVEQ 154 >gi|126727971|ref|ZP_01743794.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126702744|gb|EBA01854.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 122 Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats. Identities = 48/123 (39%), Positives = 79/123 (64%), Gaps = 2/123 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKR+R RR ++GM+Q++L E +GI FQQ+QKYE G+NR+ ASRL I+E L Sbjct: 1 MKHPVDVHVGKRVRHRRWMVGMTQQQLAEKVGIKFQQIQKYETGMNRISASRLWAIAENL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFI-STPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + ISFFF+ + + + + S + L+L R + I + + R+++ EL R Sbjct: 61 DVQISFFFEGLEGNEKASDQKFEGMPENVFSDKEALELVRCYYAIPENQ-RKRLFELARV 119 Query: 126 IVS 128 + + Sbjct: 120 LSA 122 >gi|218510909|ref|ZP_03508787.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 157 Score = 94.1 bits (232), Expect = 5e-18, Method: Composition-based stats. Identities = 45/135 (33%), Positives = 81/135 (60%), Gaps = 3/135 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +++ +PVDI+VG+++R+RR+ +SQ +LG+ +G+++QQVQKYE G NR+ AS L I Sbjct: 23 DSEQASHPVDIHVGQQLRIRRVHSNLSQSELGQKVGLSYQQVQKYESGKNRISASMLYEI 82 Query: 63 SEVLESPISFFFDVSPTVCSD--ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + L P+ FFD P I+ E + + F++T +G + +++ K+R + + Sbjct: 83 AGGLNVPVGCFFDGLPQPGESATIAPEADERIAFLATAEGRRFVEEILRLP-PKLRTRTL 141 Query: 121 ELVRSIVSSEKKYRT 135 ++R+I E K Sbjct: 142 AVIRAIAGDEDKAEE 156 >gi|83591618|ref|YP_425370.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83574532|gb|ABC21083.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 145 Score = 94.1 bits (232), Expect = 5e-18, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 79/133 (59%), Gaps = 9/133 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +VGKRIR RR++LG+SQ+++ + +G+T+QQ KYE+G+NR+ A RL I++VL P++ Sbjct: 21 DRHVGKRIRERRVMLGLSQQQMADMIGVTYQQAHKYERGINRISAGRLFEIAQVLHVPVN 80 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 +FFD S+ S L+L R F I + + ++ + +L R++ ++ Sbjct: 81 YFFDGLDDEASETLSPR--------QRMCLELARNFAMIQNERHQEALSQLARALA-AQV 131 Query: 132 KYRTIEEECMVEQ 144 + EEC ++ Sbjct: 132 SVVEVIEECQAQR 144 >gi|209546420|ref|YP_002278310.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539277|gb|ACI59210.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 134 Score = 94.1 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 82/134 (61%), Gaps = 1/134 (0%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P+ VD++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ Sbjct: 2 KEEPHSVDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAG 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L+ + FFD + +FI + +G+ LN F I + +R+KI++LV+ Sbjct: 62 ALKVDVRTFFDDLSAPDTAN-DNPAPSEEFIISREGVLLNAAFFSIKNEALRKKILKLVQ 120 Query: 125 SIVSSEKKYRTIEE 138 +I +E+ E Sbjct: 121 AIAHTEQLDGEAAE 134 >gi|163850474|ref|YP_001638517.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|240137535|ref|YP_002962006.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|254560007|ref|YP_003067102.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|163662079|gb|ABY29446.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] gi|240007503|gb|ACS38729.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|254267285|emb|CAX23117.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 142 Score = 93.0 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 5/133 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K VD VG RI R G+SQ LG +G+TFQQVQKYEKG NRVGA RL+ Sbjct: 1 MMP--KQTTDVDRLVGLRITALRKARGLSQTALGTAVGVTFQQVQKYEKGQNRVGAGRLR 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+ +LE P+S FF+ + E+ V F+ + L R F I+D ++R++++ Sbjct: 59 EIARLLEVPVSAFFE---EGDGAAAQEQTEVFGFLRAHGAVDLLRAFATIEDDQMRREVL 115 Query: 121 ELVRSIVSSEKKY 133 +VRS +K Sbjct: 116 AIVRSAARLGRKK 128 >gi|190404401|ref|YP_001961032.1| rcorf57 [Agrobacterium rhizogenes] gi|158322197|gb|ABW33614.1| rcorf57 [Agrobacterium rhizogenes] Length = 163 Score = 93.0 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 52/131 (39%), Positives = 79/131 (60%), Gaps = 10/131 (7%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+P+D+ VG +R GMSQ L E LG+TFQQVQKYEKG NRVGASRL +++ + Sbjct: 33 KAPSPIDVEVGASVR------GMSQSTLAEALGVTFQQVQKYEKGTNRVGASRLLNVATL 86 Query: 66 LESPISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 L P+S+FFD + E + F+ T +G LN F +I +R++++ Sbjct: 87 LGVPVSYFFDSQSRDGKPDGLTGTGAEMELSAFLDTDEGRDLNVAFARIARPALRRQVLS 146 Query: 122 LVRSIVSSEKK 132 LV+++ +++ K Sbjct: 147 LVKAMAATDVK 157 >gi|188580238|ref|YP_001923683.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179343736|gb|ACB79148.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 135 Score = 92.6 bits (228), Expect = 1e-17, Method: Composition-based stats. Identities = 53/134 (39%), Positives = 75/134 (55%), Gaps = 5/134 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K VD VG RI R G+SQ LG +G+TFQQVQKYEKG NRVGA RL+ Sbjct: 1 MMP--KQTTDVDRLVGLRITALRKARGLSQTALGTAVGVTFQQVQKYEKGQNRVGAGRLR 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+ +LE P+S FF+ + E+ V F+ + L R F I+D ++R++++ Sbjct: 59 EIARLLEVPVSAFFE---EGDGAAAQEQTEVFGFLRAHGAVDLLRAFASIEDDQMRREVL 115 Query: 121 ELVRSIVSSEKKYR 134 +VRS +K Sbjct: 116 AIVRSAARLGRKKE 129 >gi|218529168|ref|YP_002419984.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218521471|gb|ACK82056.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 142 Score = 92.6 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 5/133 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K VD VG RI R G+SQ LG +G+TFQQVQKYEKG NRVGA RL+ Sbjct: 1 MMP--KQTTDVDRLVGLRITALRKARGLSQTALGTAVGVTFQQVQKYEKGQNRVGAGRLR 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+ +LE P+S FF+ + E+ V F+ + L R F I+D ++R++++ Sbjct: 59 EIARLLEVPVSAFFE---EGDGAAAQEQTEVFGFLRAHGAVDLLRAFATIEDDQMRREVL 115 Query: 121 ELVRSIVSSEKKY 133 +VRS +K Sbjct: 116 AIVRSAARLGRKK 128 >gi|258541402|ref|YP_003186835.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632480|dbj|BAH98455.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256635537|dbj|BAI01506.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03] gi|256638592|dbj|BAI04554.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07] gi|256641646|dbj|BAI07601.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22] gi|256644701|dbj|BAI10649.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26] gi|256647756|dbj|BAI13697.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32] gi|256650809|dbj|BAI16743.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653800|dbj|BAI19727.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12] Length = 164 Score = 92.6 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 62/149 (41%), Positives = 88/149 (59%), Gaps = 22/149 (14%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + +D +VGKRIRLRR +LG+SQEKLGE LGITFQQ+QKYE+G NRVGASRL Sbjct: 13 MIQPHAAASAIDAHVGKRIRLRRTLLGLSQEKLGEALGITFQQIQKYERGANRVGASRLY 72 Query: 61 HISEVLESPISFFFD----------------------VSPTVCSDISSEENNVMDFISTP 98 HI+ VL+ PISFFFD + + + ++ + T Sbjct: 73 HIACVLDVPISFFFDDMHPVGAVSNKHAQFSETRKSFGTTSDKNTPAAPTTDTKSVFKTQ 132 Query: 99 DGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + L+L R + I D ++R+KI+EL+ ++ Sbjct: 133 ETLELVRAYYSIPDTQMRRKILELMLTMS 161 >gi|220922145|ref|YP_002497446.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946751|gb|ACL57143.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 134 Score = 92.6 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 53/127 (41%), Positives = 79/127 (62%), Gaps = 4/127 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K VD VG RI R G+SQ LG +G+TFQQVQKYEKG NRVGA RL+ I+ + Sbjct: 3 KQTTEVDRLVGIRITALRKAKGLSQTALGNAVGVTFQQVQKYEKGQNRVGAGRLREIARL 62 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE P+S FF+ +D + ++NV F+ST + + R ++QI+D ++R++++ +VRS Sbjct: 63 LEVPVSAFFEE----PNDAAGRDDNVFGFLSTQGAVDILRAYVQIEDDQLRREVLAIVRS 118 Query: 126 IVSSEKK 132 + Sbjct: 119 AARLSRS 125 >gi|170740688|ref|YP_001769343.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168194962|gb|ACA16909.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 134 Score = 92.6 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 54/124 (43%), Positives = 76/124 (61%), Gaps = 4/124 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K VD VG RI R G+SQ LG +G+TFQQVQKYEKG NRVGA RL+ I+ + Sbjct: 3 KQTTEVDRLVGIRITALRKAKGLSQTALGNAVGVTFQQVQKYEKGQNRVGAGRLREIARL 62 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE P+S FF+ SD + NV F+ST + + R ++QI+D ++R++++ +VRS Sbjct: 63 LEVPVSAFFED----PSDTQGNDENVFGFLSTQGAIDVLRAYVQIEDDQLRREVLAIVRS 118 Query: 126 IVSS 129 Sbjct: 119 AARL 122 >gi|329114990|ref|ZP_08243745.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum DM001] gi|326695433|gb|EGE47119.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum DM001] Length = 164 Score = 92.6 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 61/149 (40%), Positives = 89/149 (59%), Gaps = 22/149 (14%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + +D +VGKRIRLRR +LG+SQEKLGE LGITFQQ+QKYE+G NRVGASRL Sbjct: 13 MIQPHAAASAIDAHVGKRIRLRRTLLGLSQEKLGEALGITFQQIQKYERGANRVGASRLY 72 Query: 61 HISEVLESPISFFFD----------------------VSPTVCSDISSEENNVMDFISTP 98 HI+ L+ PISFFFD +P+ + + ++ + Sbjct: 73 HIACALDVPISFFFDDMHSAEVVSNKQAHFSETRKSFGAPSDKNVSVAPTSDTKNIFKKQ 132 Query: 99 DGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + L+L R + I D ++R+KI+EL++++ Sbjct: 133 ETLELVRVYYSIPDAQMRRKILELMQTMS 161 >gi|197105530|ref|YP_002130907.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196478950|gb|ACG78478.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 128 Score = 92.6 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 4/128 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + I +PVD+ VG RIRL R + G+SQ+ L E G+TFQQ+QKYE+G NRV AS L Sbjct: 3 SKPEAIADPVDVAVGARIRLLRKLKGLSQQALAEAAGVTFQQIQKYERGANRVSASMLAR 62 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L P++ F S SS + V ++ P L+L + + + R ++E Sbjct: 63 IARTLGVPVAEMFGE----ASPTSSAVDEVAALLAEPGALELLKAYADLPRGASRSALVE 118 Query: 122 LVRSIVSS 129 VRS+ S Sbjct: 119 FVRSLRSQ 126 >gi|188582991|ref|YP_001926436.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179346489|gb|ACB81901.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 135 Score = 92.6 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 50/118 (42%), Positives = 74/118 (62%), Gaps = 3/118 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D VG RI R G+SQ LG +G+TFQQVQKYEKG+NRVGA RL I+ +LE P+S Sbjct: 15 DRIVGLRITTLRKARGLSQTALGTAVGVTFQQVQKYEKGLNRVGAGRLSEIAHLLEVPVS 74 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 FF+ + + ++ V+DF+ + L R F I+D ++R+K++ +VRS+ + Sbjct: 75 AFFEEAD---GATAQKQTEVVDFLRVHGAVDLLRAFATIEDDQLRRKVLAIVRSVART 129 >gi|209963989|ref|YP_002296904.1| DNA-binding protein, putative [Rhodospirillum centenum SW] gi|209957455|gb|ACI98091.1| DNA-binding protein, putative [Rhodospirillum centenum SW] Length = 156 Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 55/127 (43%), Positives = 87/127 (68%), Gaps = 3/127 (2%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNP+DI+VG+R+RLRR +LG+SQE LGE +GITFQQ+QKYE+G NR+ ASRL ++S+VL Sbjct: 25 PNPIDIHVGQRLRLRRTLLGLSQETLGEAVGITFQQLQKYERGANRISASRLFNLSQVLG 84 Query: 68 SPISFFFDVSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P++FFF+ P + + E + ++ + L+L R + +I D VR++ +LV+ Sbjct: 85 VPVTFFFEDLPASGPEAPLDGGSETQEFESMARRETLELVRAYYRIPDEGVRRRAFDLVK 144 Query: 125 SIVSSEK 131 ++ + Sbjct: 145 ALAGEPE 151 >gi|218532679|ref|YP_002423495.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218524982|gb|ACK85567.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 134 Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 50/130 (38%), Positives = 72/130 (55%), Gaps = 4/130 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K D VG+RI + R G+SQ LG +G+TFQQVQKYE G+NRVGASRL I+ V Sbjct: 9 KRATEQDRIVGERIHVLRKSKGLSQTALGSAIGVTFQQVQKYENGMNRVGASRLSDIARV 68 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L ++ FF+ + E+ + P + L R FI I+D ++R++++ LVRS Sbjct: 69 LGVSVAVFFEEGDA----AAPEKTEAFGLLHAPGAVDLLRAFITIEDDQLRREVLALVRS 124 Query: 126 IVSSEKKYRT 135 E+ Sbjct: 125 AARMEQDQGA 134 >gi|170746516|ref|YP_001752776.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170653038|gb|ACB22093.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 146 Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 48/123 (39%), Positives = 66/123 (53%), Gaps = 6/123 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +D VG RI R G+SQ L LG++FQQVQKYE G NRVGA RLQ I+E Sbjct: 9 KQTTAIDHGVGSRIAFLRAANGLSQSALASALGVSFQQVQKYETGKNRVGAGRLQAIAER 68 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L P+S FF+ P +D + ++L R + QI D ++R+ ++ LV+S Sbjct: 69 LGVPVSSFFEPEPEATTDSGPA------LLRVAGAVELLRAYNQIADDQMRRDVLSLVKS 122 Query: 126 IVS 128 Sbjct: 123 AAR 125 >gi|254502751|ref|ZP_05114902.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222438822|gb|EEE45501.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 112 Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 62/112 (55%), Positives = 85/112 (75%), Gaps = 5/112 (4%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSD 83 M+LGMSQEKLGE LGITFQQ+QKYEKG NR+GASRLQHI+ VL+ P+SFFF+ +P + Sbjct: 1 MMLGMSQEKLGEALGITFQQIQKYEKGTNRIGASRLQHIATVLKVPVSFFFEDAPGTPEE 60 Query: 84 IS-----SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + V+DF+S+ +GL LN+ F++I+D KVR++I++LVRS+ E Sbjct: 61 AEGFGETQPTSYVVDFLSSSEGLSLNKAFVRIEDPKVRRRIVDLVRSLAGDE 112 >gi|167644985|ref|YP_001682648.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167347415|gb|ABZ70150.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 149 Score = 91.8 bits (226), Expect = 2e-17, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 85/139 (61%), Gaps = 9/139 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + P+ VDI+VG R+R+RR LG+SQ +L + +GITFQQ+QKYE+G NRV AS+L Sbjct: 1 MAADQEPHLVDIHVGARVRMRRKALGLSQTQLADSVGITFQQLQKYERGANRVSASKLYG 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMD--------FISTPDGLQLNRYFIQIDDV 113 ++ L++ +S+FF V ++EE + + F+ + +GL+L F QI Sbjct: 61 MAVTLQTSVSWFFQGLSAVDVANATEEQMLEEHRLKGLQRFLLSSEGLELASLFPQIP-P 119 Query: 114 KVRQKIIELVRSIVSSEKK 132 RQ+++ L +S++ ++ Sbjct: 120 TQRQQLLALAKSLIDRGEE 138 >gi|58039234|ref|YP_191198.1| transcriptional regulator [Gluconobacter oxydans 621H] gi|58001648|gb|AAW60542.1| Transcriptional regulator [Gluconobacter oxydans 621H] Length = 212 Score = 91.4 bits (225), Expect = 3e-17, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 53/176 (30%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PVD++VG RIRLRR ++G+SQEKLGE LG+TFQQ+QKYE+G NRVGASRL +++VL+ P Sbjct: 35 PVDVHVGNRIRLRRTLMGLSQEKLGEALGLTFQQIQKYERGANRVGASRLYDLAQVLDVP 94 Query: 70 ISFFFDVSPTVCSDISSEEN---------------------------------------- 89 I FFFD S Sbjct: 95 IGFFFDDMQEARPSAPSSAPRPFPGSAPTFNPAFGQASAAQAPVPGFAETQSAFGAPPPR 154 Query: 90 -------------NVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + S + + L R + +I D VR+++++L+RS+ ++ K Sbjct: 155 PAAPPPRLFDLPVDEAALFSRRETVDLVRSYYRIPDPAVRKRMLDLIRSLGPADVK 210 >gi|222087820|ref|YP_002546358.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725268|gb|ACM28424.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 159 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 82/134 (61%), Gaps = 5/134 (3%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G+ ++ +PVD +VG+++R+ R+ +SQ +LG +G+++QQVQKYE G NR+ AS L I Sbjct: 23 GDGQMIHPVDRHVGQQLRILRIHSNLSQTELGHEVGLSYQQVQKYESGKNRISASMLYVI 82 Query: 63 SEVLESPISFFFDVSPTVCSDISS----EENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + L P++ FFD P S+++ E + + +I+T +G + +++ ++R + Sbjct: 83 ASRLNVPVNRFFDGLPPSESEVTDGIVPEVDERIAYIATAEGRRFVEEILRLP-PRLRTR 141 Query: 119 IIELVRSIVSSEKK 132 + +++ + E++ Sbjct: 142 TLAVIKVLAGDEEE 155 >gi|114571474|ref|YP_758154.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114341936|gb|ABI67216.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 128 Score = 91.4 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 59/123 (47%), Positives = 85/123 (69%), Gaps = 2/123 (1%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P +D +VG R+RLRR +L MSQ +LGE LG+TFQQVQKYE+G NR+GASRL ++++V E Sbjct: 6 PTSIDQHVGARLRLRRSLLEMSQSELGEKLGVTFQQVQKYERGTNRIGASRLFNVAKVTE 65 Query: 68 SPISFFFDVSPTVCSDISS--EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 P+S+FF+ S + + + DFI++PDGL L F I D VR+++I+L+RS Sbjct: 66 VPVSYFFEGLEEDGSSELKGGDSDTLYDFIASPDGLALASAFAGIKDQTVRRRVIDLLRS 125 Query: 126 IVS 128 + Sbjct: 126 LAD 128 >gi|163849608|ref|YP_001637651.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|163661213|gb|ABY28580.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] Length = 134 Score = 91.0 bits (224), Expect = 4e-17, Method: Composition-based stats. Identities = 49/126 (38%), Positives = 77/126 (61%), Gaps = 4/126 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +D VG+RI++ R G++Q LG+ +G+TFQQVQKYE G+NRVGASRL I+ V Sbjct: 9 KRATDLDRLVGERIQVLRKSKGLTQTALGQAIGVTFQQVQKYENGMNRVGASRLSDIARV 68 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE +S F+D + V F+ T + L R F +I+D ++R++++ +VR+ Sbjct: 69 LEVRVSSFYDGDE----GEGEDRAEVFGFLRTHGAIDLLRAFSEIEDDQLRREVLAIVRT 124 Query: 126 IVSSEK 131 + E+ Sbjct: 125 VARVEQ 130 >gi|114799525|ref|YP_758842.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739699|gb|ABI77824.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 145 Score = 91.0 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 58/132 (43%), Positives = 83/132 (62%), Gaps = 4/132 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K+P+ +D VG+ I +R L ++QEKLGE LG+TFQQVQKYEKGVNRV A RL Sbjct: 1 MSESKLPSDIDRVVGQNIHRQRRKLKLTQEKLGELLGLTFQQVQKYEKGVNRVSAGRLYE 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDF----ISTPDGLQLNRYFIQIDDVKVRQ 117 I+ VLE P+ FFFD + TV S+ +E +D + + + LQL F +I+D +R Sbjct: 61 IAGVLEVPVEFFFDGADTVVSNGVAELAEDLDDTQLAVLSDEVLQLIEAFQKIEDAALRG 120 Query: 118 KIIELVRSIVSS 129 ++ VR+ S+ Sbjct: 121 SLLATVRAAASA 132 >gi|83309880|ref|YP_420144.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944721|dbj|BAE49585.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 151 Score = 90.3 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 8/123 (6%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N D +VG RIR RR++LG+SQ+++ + +G+T+QQ KYE+G+NR+ A RL I++VL Sbjct: 37 ANDTDRHVGSRIRERRIMLGLSQQQMADLIGVTYQQAHKYERGINRISAGRLFEIAQVLG 96 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 P+ FF++ S L+L R F I + + ++ + +L R++ Sbjct: 97 VPVGFFYEGLENRRGSDLSAR--------QRMCLELARNFTSITNERHQEALSQLARALA 148 Query: 128 SSE 130 + + Sbjct: 149 AED 151 >gi|310816677|ref|YP_003964641.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] gi|308755412|gb|ADO43341.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] Length = 119 Score = 89.9 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 78/123 (63%), Gaps = 5/123 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VD+ VGKRIR RR ++GM+Q++L E +GI FQQ+QKYE G NRV ASRL I+ L Sbjct: 1 MAHTVDVYVGKRIRQRRWLIGMTQQQLAEHVGIKFQQIQKYETGANRVSASRLWEIAHAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + IS+F++ + ++E++ + + + + ++L R + I + + R+ I EL R + Sbjct: 61 GTSISYFYEGM----NAAATEDSTLNEELWGREAMELLRSYYAIPEDQ-RRHIFELARVL 115 Query: 127 VSS 129 + Sbjct: 116 SDA 118 >gi|114327057|ref|YP_744214.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315231|gb|ABI61291.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] Length = 152 Score = 89.9 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 50/140 (35%), Positives = 75/140 (53%), Gaps = 13/140 (9%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 PN +D++VG+RIRLRR LG+S++KLG+ +GI+ Q+QKYE G R GA RL + Sbjct: 13 EKDDQPNTLDLHVGRRIRLRRAFLGVSEQKLGDLIGISASQIQKYETGTLRAGAVRLFDL 72 Query: 63 SEVLESPISFFFDVSPTVCSD-------------ISSEENNVMDFISTPDGLQLNRYFIQ 109 + ++ ISFFFD P +E + L+L + F + Sbjct: 73 ARAMDVSISFFFDEMPEQEVANHGVAAISRLGGFAEPQEGFGDGDTMRQEALELIQAFFR 132 Query: 110 IDDVKVRQKIIELVRSIVSS 129 I D VR++I+EL+RS+ Sbjct: 133 ITDPAVRERILELIRSLAKE 152 >gi|294084637|ref|YP_003551395.1| putative transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664210|gb|ADE39311.1| Predicted transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] Length = 155 Score = 89.5 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 57/133 (42%), Positives = 83/133 (62%), Gaps = 12/133 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N VD++VGKR+RLRR +LGMSQE+LG L ITFQQVQKYE+G NR+ ASRL I ++L+ Sbjct: 19 NAVDMHVGKRVRLRRTLLGMSQEQLGTELNITFQQVQKYERGANRISASRLWDIGQILDV 78 Query: 69 PISFFFDVSPTVCSDISSE------------ENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 PI++FFD S + + D ++ + L+L R + I+ VR Sbjct: 79 PINYFFDDMTENTMQSSPRRISRGGEILDLVDEQIKDPMARRETLELVRSYYSIEKPLVR 138 Query: 117 QKIIELVRSIVSS 129 ++I E+V+SI ++ Sbjct: 139 KRISEMVKSIATT 151 >gi|218532713|ref|YP_002423529.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218525016|gb|ACK85601.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 135 Score = 89.5 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 53/134 (39%), Positives = 75/134 (55%), Gaps = 3/134 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 K D VG+RI++ R G+SQ LG LG+TFQQ+QKYE GVNRVGASRL Sbjct: 5 SSEPKCATEQDRLVGERIKVLRKSKGISQTALGSALGVTFQQIQKYENGVNRVGASRLSE 64 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ VLE P+S FF+ + E F+ + L FI I+D ++R++++ Sbjct: 65 VARVLEVPVSTFFEEGGGLVEQGQQEVFE---FLRVRGAVDLLNAFIAIEDDQLRREVLA 121 Query: 122 LVRSIVSSEKKYRT 135 LVR ++K RT Sbjct: 122 LVRCAARMKQKQRT 135 >gi|114328663|ref|YP_745820.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114316837|gb|ABI62897.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] Length = 184 Score = 89.5 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 76/133 (57%), Gaps = 14/133 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG RIR RR++LG+SQ++L + +G+T+QQ KYE+G+NR+ A RL IS VL PIS+F Sbjct: 53 HVGNRIRERRVMLGLSQQQLAQMIGVTYQQAHKYERGLNRISAGRLYQISHVLNVPISWF 112 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS----- 128 FD ++E L+L R F ID+ K ++ + ++ R++ + Sbjct: 113 FDG-------FATESKTADLTTRQRMCLELARNFAAIDNEKHQEALSQMARALAAQSVAN 165 Query: 129 --SEKKYRTIEEE 139 ++ Y T EE Sbjct: 166 KMAQDGYATALEE 178 >gi|83594927|ref|YP_428679.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577841|gb|ABC24392.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 156 Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 16/142 (11%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+PVD++VG+R+RLRR +LGMSQE+L +G+TFQQ+QKYE+G NRV ASRL IS+ Sbjct: 15 NKSPDPVDVHVGRRLRLRRTLLGMSQEQLANAVGVTFQQIQKYERGSNRVSASRLYDISK 74 Query: 65 VLESPISFFFDVSPTVCSDI----------------SSEENNVMDFISTPDGLQLNRYFI 108 VL P++FFF+ + + D + + L+L R + Sbjct: 75 VLGVPVAFFFEDIGDEVTSARLAPIVPDITGSGLSEPAIPAYEQDPLQKNETLELIRAYW 134 Query: 109 QIDDVKVRQKIIELVRSIVSSE 130 ++ VR++ ++L++S+ + Sbjct: 135 RLPTDTVRKRALDLLKSLSGRD 156 >gi|288958165|ref|YP_003448506.1| transcriptional regulator [Azospirillum sp. B510] gi|288910473|dbj|BAI71962.1| transcriptional regulator [Azospirillum sp. B510] Length = 155 Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 57/138 (41%), Positives = 91/138 (65%), Gaps = 9/138 (6%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNP+DI+VG R+RLRR +LG+SQEKLGE +GITFQQ+QKYE+G NR+ ASRL ++S+VL Sbjct: 21 PNPIDIHVGARLRLRRTLLGLSQEKLGEAVGITFQQLQKYERGSNRISASRLYNLSQVLG 80 Query: 68 SPISFFFDVSPTVCSDISS------EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 P+S+FFD P+ + E + + ++ + L+L R + +I+D VR++ + Sbjct: 81 VPVSYFFDDMPSPDQITAETPSESMSETDEFESMARRETLELVRAYYRIEDPGVRKRTFD 140 Query: 122 LVRSIVSSEKKYRTIEEE 139 L++++ + E+ Sbjct: 141 LLKALGGD---KIALLED 155 >gi|163849609|ref|YP_001637652.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|163661214|gb|ABY28581.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] Length = 135 Score = 89.1 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 3/130 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K D+ VG RI+ R G+SQ LG +G++FQQ+QKYE G NRVGA RL I+ V Sbjct: 9 KQATKEDVIVGLRIQTLRKSRGISQTALGIAIGVSFQQIQKYEIGANRVGAGRLSDIARV 68 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L +P+S FF+ + + E+ V D + P + L FI I+D ++R++++ LVRS Sbjct: 69 LGAPVSVFFE---EGDAAAAQEKTEVFDLLRAPGAVDLLNAFITIEDDRLRREVLALVRS 125 Query: 126 IVSSEKKYRT 135 E+ + Sbjct: 126 AARMEQDHGA 135 >gi|167647540|ref|YP_001685203.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167349970|gb|ABZ72705.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 140 Score = 88.7 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 89/126 (70%), Gaps = 2/126 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD+ VG R+R+RR +LG+SQ +L + LGITFQQ+QKYE+G NR+ AS+L + +L Sbjct: 9 MAHPVDLYVGARLRIRRKVLGLSQTQLADALGITFQQIQKYERGANRISASKLYEAARLL 68 Query: 67 ESPISFFFDVSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +SP+++FFD + + + F++TP+GL+L F +++D ++R+++++LV+ Sbjct: 69 QSPVAYFFDGLDDTAQNGLDDGFAQRMTQFVATPEGLELASLFPRLNDRRLRRRVVDLVK 128 Query: 125 SIVSSE 130 ++V E Sbjct: 129 AMVDDE 134 >gi|197106910|ref|YP_002132287.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196480330|gb|ACG79858.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 144 Score = 88.3 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 53/129 (41%), Positives = 84/129 (65%), Gaps = 1/129 (0%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNPVD +VG RIR+RR LGMSQE+L E +G+TFQQVQKYE+ NRV AS+L ++ L+ Sbjct: 16 PNPVDRHVGLRIRMRRKELGMSQERLAEAIGLTFQQVQKYERATNRVSASKLFEMARALQ 75 Query: 68 SPISFFFDVSPTV-CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + I++F++ + S + V F+ + DG++L F +I +VR++I++LVR++ Sbjct: 76 TSIAYFYEGLEEAGAGEASPPSDEVQTFLMSHDGMELAHAFPRIRQARVRRRILDLVRAV 135 Query: 127 VSSEKKYRT 135 + + Sbjct: 136 AETPETAEA 144 >gi|118590494|ref|ZP_01547896.1| probable transcriptional regulator protein [Stappia aggregata IAM 12614] gi|118436957|gb|EAV43596.1| probable transcriptional regulator protein [Stappia aggregata IAM 12614] Length = 108 Score = 88.0 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 58/108 (53%), Positives = 81/108 (75%), Gaps = 5/108 (4%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDIS-- 85 MSQEKLGE LGITFQQ+QKYEKG NR+GASRLQHI+ VL+ P+SFFF+ +P + Sbjct: 1 MSQEKLGESLGITFQQIQKYEKGTNRIGASRLQHIATVLKVPVSFFFEDAPGTPDEAEGF 60 Query: 86 ---SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + V+DF+S+ +GL LN+ F++I+D KVR++I++LVRS+ + Sbjct: 61 GETQPTSYVVDFLSSSEGLSLNKAFVRIEDPKVRRRIVDLVRSLAGDD 108 >gi|21492894|ref|NP_659969.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|190894068|ref|YP_001984362.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] gi|21467319|gb|AAM54982.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|190699729|gb|ACE93812.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 254 Score = 88.0 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 49/132 (37%), Positives = 77/132 (58%), Gaps = 5/132 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 117 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 176 Query: 69 PISFFFDVSPTVC----SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+S FF+ P I +E + + +IST +G +L + + +VR +++ LV Sbjct: 177 PVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRLIDDVL-LLSPRVRSRVVALVS 235 Query: 125 SIVSSEKKYRTI 136 SIV E + + Sbjct: 236 SIVDEEMEEQKP 247 >gi|170749530|ref|YP_001755790.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656052|gb|ACB25107.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 162 Score = 88.0 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 4/129 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K VD VG RI R GMSQ LG +G+TFQQVQKYEKG NRVGA RL+ I+ + Sbjct: 32 KQTTDVDRLVGIRITALRKARGMSQTALGNAVGVTFQQVQKYEKGQNRVGAGRLREIARL 91 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE P+S FF+ S + + +V F+S ++L R + QI+D ++R+ ++ LVRS Sbjct: 92 LEVPVSAFFEESEPRENA----QEDVFGFLSAHGAIELLRAYAQIEDEQMRRDVLALVRS 147 Query: 126 IVSSEKKYR 134 + Sbjct: 148 AARLAQNRA 156 >gi|296532393|ref|ZP_06895122.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] gi|296267280|gb|EFH13176.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] Length = 144 Score = 88.0 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 71/120 (59%), Gaps = 7/120 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +VG RIR RR++LG+SQ++L +G+T+QQ KYE+G+NR+ A RL I+ VL P+S Sbjct: 27 DRHVGMRIRERRLMLGLSQQQLASMIGVTYQQAHKYERGLNRISAGRLFEIATVLAVPVS 86 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 +FF+ + + + L+L R F ID+ + ++ + ++ R++ + + Sbjct: 87 WFFEGLDE-------DGSTQPLGVRQRMCLELARNFALIDNERHQEALSQMARALAAQSQ 139 >gi|329851244|ref|ZP_08266001.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328840090|gb|EGF89662.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 152 Score = 88.0 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 41/129 (31%), Positives = 76/129 (58%), Gaps = 2/129 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 ++ +P+D++VG+R+RL+R LG++Q L L ++FQQ+QKYE+G NR+ AS+L Sbjct: 14 SKDQTEAHPIDLHVGERVRLKRKELGITQPALATQLKVSFQQLQKYERGFNRISASKLYE 73 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L+ PI +FFD + + S + V + + T + +L F ++ + R+ + Sbjct: 74 IAGALDVPIGYFFDGAKGTAAAASPKVPVVPETL-TAEEARLLEDFRRLK-PEGRKFVTN 131 Query: 122 LVRSIVSSE 130 VR + + + Sbjct: 132 AVRRLAAQK 140 >gi|144900186|emb|CAM77050.1| transcriptional regulators [Magnetospirillum gryphiswaldense MSR-1] Length = 153 Score = 87.6 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 3/124 (2%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNP+D+++GKRIR RR +G+S E L + + + + + E G RVG L +S VL+ Sbjct: 25 PNPLDLHLGKRIRARRNAIGLSLEDLAQAMAVATETLLAMENGSQRVGPQLLHRLSIVLD 84 Query: 68 SPISFFFDVSP-TVCSDISSEENNVMDFIST--PDGLQLNRYFIQIDDVKVRQKIIELVR 124 P +FFD P + +D + D + + L+L R ++ I D K RQ + +L R Sbjct: 85 VPFGYFFDGMPRELDADFPGTPFDDCDPVGDDMREALELVRAYLAISDEKKRQMVHQLAR 144 Query: 125 SIVS 128 + Sbjct: 145 KLSE 148 >gi|114799059|ref|YP_759118.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739233|gb|ABI77358.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 143 Score = 87.6 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 49/131 (37%), Positives = 77/131 (58%), Gaps = 10/131 (7%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N VD VG+R+R RR++LG++Q+++ + LGI++QQ+QKYE G NR+ A RL I+EVLE Sbjct: 9 ANQVDRQVGERMRRRRILLGLTQDQVADALGISYQQIQKYETGANRISAGRLAQIAEVLE 68 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 +FF V + S S+ ++L R F +I+D +VR ++ L+RS+ Sbjct: 69 VLPGWFFGVPEAADAPGS----------SSRAVIELVRNFSRIEDERVRTHLMALMRSLS 118 Query: 128 SSEKKYRTIEE 138 S + E Sbjct: 119 GSGEGESAELE 129 >gi|188580819|ref|YP_001924264.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179344317|gb|ACB79729.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 135 Score = 87.6 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 51/130 (39%), Positives = 75/130 (57%), Gaps = 3/130 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K D VG+RI R G+SQ LG +G+TFQQVQKYE+G NRVGA RLQ I+ + Sbjct: 9 KRATEQDRLVGERIVALRKARGLSQAALGAAVGVTFQQVQKYERGTNRVGAGRLQEIARL 68 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE P+S FFD D+ ++ F+ + L R F I+D ++R++++ +VRS Sbjct: 69 LEVPVSAFFDEGNGAAGDMQADV---FGFLRIHGAIDLLRAFATIEDDQLRREVLAIVRS 125 Query: 126 IVSSEKKYRT 135 ++ R+ Sbjct: 126 ASRLGREERS 135 >gi|99077913|ref|YP_611172.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99034856|gb|ABF61910.1| transcriptional regulator XRE family [Ruegeria sp. TM1040] Length = 125 Score = 87.6 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 66/120 (55%), Gaps = 2/120 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI+VGKRIR RR + +Q+ L E +G+ QQ+Q YE NRV ASRL IS+VL Sbjct: 1 MPHPVDIHVGKRIRTRRWTVDETQKYLAEKVGVKCQQIQNYEVASNRVSASRLWDISKVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +++FF+ + S + + L + + +I + R ++L +S+ Sbjct: 61 GVDVTYFFEGFDPR-QETSDTHEFHRTASQEKEAIALVQSYYKIPKHQ-RPIFLQLAKSL 118 >gi|254295330|ref|YP_003061353.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043861|gb|ACT60656.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 132 Score = 87.2 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 4/133 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + VDI VGKR+R RR +LGM+Q+ L +G+ FQQ+QKYE G NR+ ASRL ++ L Sbjct: 1 MATDVDIYVGKRLRRRRRLLGMTQQDLASEIGVRFQQIQKYECGANRITASRLFDLANAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVM---DFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +S+FFD + + N D +S + L+L R + ++ + R+++++L Sbjct: 61 TVNVSYFFDGLAPDGKQAPANDGNDTLSGDILSQKETLELVRAYYRL-SERPRRRLLDLA 119 Query: 124 RSIVSSEKKYRTI 136 +++ K Sbjct: 120 KALEEDNKDQGAA 132 >gi|315499301|ref|YP_004088105.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315417313|gb|ADU13954.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 125 Score = 87.2 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 47/119 (39%), Positives = 70/119 (58%), Gaps = 2/119 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N VD++VG RIR RR +GMSQ L L +TFQQVQKYE+G NR+ AS++ + L Sbjct: 5 NKVDVHVGHRIRSRRKEIGMSQTDLANHLSLTFQQVQKYERGFNRISASKMHDAARALGV 64 Query: 69 PISFFFDVSP-TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 I +FF+ D S E +V F+ T +G +L+ +F ++ R+ ++ LVR + Sbjct: 65 HIEYFFEGLDNETELDRSESEASVTQFLLTREGAELSSHFSKL-SANQRKGVLALVRML 122 >gi|83594572|ref|YP_428324.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577486|gb|ABC24037.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 149 Score = 87.2 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 11/140 (7%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + + + VD +VG+R+R RR L + QE L +G++FQQ+QKYE+G NR+ ASRL I Sbjct: 10 SDTRTIHHVDAHVGQRVRQRRTALILDQETLARRIGVSFQQIQKYERGRNRISASRLYDI 69 Query: 63 SEVLESPISFFFDVSP-----------TVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 ++ L PI +FF ++ + D + L L + F + Sbjct: 70 AKALAVPIDYFFSDLERGDPRHDGALAEDMGRLAQGGSAPPDPLRLTQSLDLAQAFWALP 129 Query: 112 DVKVRQKIIELVRSIVSSEK 131 D +RQ I L++++ S E Sbjct: 130 DDGMRQSFIALLKAMSSFED 149 >gi|190894008|ref|YP_001984302.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190699669|gb|ACE93752.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 246 Score = 87.2 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 49/131 (37%), Positives = 77/131 (58%), Gaps = 5/131 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 117 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 176 Query: 69 PISFFFDVSPTVC----SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+S FF+ P I +E + + +IST +G +L + + +VR +++ LV Sbjct: 177 PVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRLIDDVL-LLSPRVRSRVVALVS 235 Query: 125 SIVSSEKKYRT 135 SIV E + + Sbjct: 236 SIVDEEMEEQK 246 >gi|56697146|ref|YP_167509.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56678883|gb|AAV95549.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 134 Score = 86.8 bits (213), Expect = 9e-16, Method: Composition-based stats. Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 4/122 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + VD VG+RIR RR LG+SQ +LG +G+ FQQVQKYE G NRV ASRL I+EVL+ Sbjct: 2 DTVDTVVGRRIRARRSALGLSQAELGRAVGVRFQQVQKYESGANRVSASRLWAIAEVLDV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMD---FISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 IS FF+ S + + +D F+ D +++ + + ++ ++ VR+ Sbjct: 62 HISHFFEGIQAPDSGVIDGSDAPVDRLMFLQDRDSVEMVEIYSSLP-PAQKRAVLAFVRT 120 Query: 126 IV 127 + Sbjct: 121 MA 122 >gi|328545923|ref|YP_004306032.1| transcriptional regulator protein [polymorphum gilvum SL003B-26A1] gi|326415663|gb|ADZ72726.1| Probable transcriptional regulator protein [Polymorphum gilvum SL003B-26A1] Length = 109 Score = 86.8 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 55/108 (50%), Positives = 82/108 (75%), Gaps = 5/108 (4%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI--- 84 MSQEKLGE LGITFQQ+QKYEKG NR+GASRLQHI+ +L+ P++FFF+ +P + Sbjct: 1 MSQEKLGESLGITFQQIQKYEKGTNRIGASRLQHIATILKVPVAFFFEDAPGSPEEAEGF 60 Query: 85 --SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + V+DF+S+ +GL LN+ F++I+D KVR++I++LVR++ + Sbjct: 61 GEAQPTSYVVDFLSSSEGLSLNKAFVRIEDPKVRRRIVDLVRALAGDD 108 >gi|307315947|ref|ZP_07595440.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307322835|ref|ZP_07602141.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306891521|gb|EFN22401.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306898408|gb|EFN29102.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 144 Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 57/133 (42%), Positives = 86/133 (64%), Gaps = 7/133 (5%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P PVD++VG+RIR+RR+ + ++ L + +G+TFQQVQKYEKG NRVGASRLQ I++ Sbjct: 10 KGKPEPVDVHVGRRIRMRRIWMQVTLTALADAIGVTFQQVQKYEKGTNRVGASRLQQIAD 69 Query: 65 VLESPISFFFDVSP-------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 L +P+S+FF+ P S + +++F S+ GL L R F QI D +VR Sbjct: 70 ALVAPVSYFFEDMPGAAPVGGDNRSGQKKLQPEIIEFASSDVGLALIRAFSQITDKRVRD 129 Query: 118 KIIELVRSIVSSE 130 +I+ LV+++ + Sbjct: 130 RILGLVKALAKQD 142 >gi|254796616|ref|YP_003081452.1| DNA-binding protein [Neorickettsia risticii str. Illinois] gi|254589843|gb|ACT69205.1| DNA-binding protein [Neorickettsia risticii str. Illinois] Length = 144 Score = 86.4 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + N K D+ +GK+IR R + G SQ + + +G+TFQQ+QKYE G NR+ SRL Sbjct: 4 ISENFKKRAETDVMIGKQIRRLRTLKGYSQAAIAKEIGVTFQQLQKYECGANRLCVSRLL 63 Query: 61 HISEVLESPISFFF-----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 I + + S+FF + D + + + L L R F I V Sbjct: 64 DICKFCKVSPSYFFASLNKEQEGDTLHDSENSIEFEHENECNKELLVLVRAFKSITQDSV 123 Query: 116 RQKIIELVRSIVSS 129 R K++ LV+++ + Sbjct: 124 RSKVLSLVKTMSQA 137 >gi|188581972|ref|YP_001925417.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179345470|gb|ACB80882.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 133 Score = 86.0 bits (211), Expect = 1e-15, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 4/128 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + K +D+ +G+RI R+ MSQ +LG +G+TFQQVQKYEKG NRVG RLQ Sbjct: 3 IKSNKAATDIDVRIGQRIAALRVNRRMSQTELGTAIGVTFQQVQKYEKGRNRVGGGRLQQ 62 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L +S F+ + V D + P G+++ R + + R I+ Sbjct: 63 IATALGVRVSDFYGDE----QPAGGDATVVFDLLRDPHGIRIARALQSANSAEARNAIVG 118 Query: 122 LVRSIVSS 129 +V ++ SS Sbjct: 119 VVEAVASS 126 >gi|222087277|ref|YP_002545812.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724725|gb|ACM27881.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 180 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 76/133 (57%), Gaps = 5/133 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + + +P+D +VG+++R+ R+ +SQ +LG + +++QQ+QKYE G NR+ AS L I+ Sbjct: 26 DTQAIHPIDRHVGQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYEIA 85 Query: 64 EVLESPISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 L PIS F+D P + + E + + +++T +G + +++ ++R + Sbjct: 86 NCLNVPISRFYDGLPQAGSELVNGGLPEIDERIAYLATSEGRRFVEEILRLP-PRLRTRT 144 Query: 120 IELVRSIVSSEKK 132 L++ + +++ Sbjct: 145 FALIQVLTGDDEE 157 >gi|88608440|ref|YP_506124.1| DNA-binding protein [Neorickettsia sennetsu str. Miyayama] gi|88600609|gb|ABD46077.1| DNA-binding protein [Neorickettsia sennetsu str. Miyayama] Length = 144 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 5/134 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + N K D+ +GK+IR R + G SQ + + +G+TFQQ+QKYE G NR+ SRL Sbjct: 4 ISENFKKRAETDVMIGKQIRRLRTLKGYSQAAIAKEIGVTFQQLQKYECGANRLCVSRLL 63 Query: 61 HISEVLESPISFFF-----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 I + + S+FF + D + + + L L R F I V Sbjct: 64 DICKFCKVSPSYFFASLNKEQEGDTLHDSENSIEFEHENEYNKELLVLVRAFKSITQDSV 123 Query: 116 RQKIIELVRSIVSS 129 R K++ LV+++ + Sbjct: 124 RSKVLSLVKTMSQA 137 >gi|222082024|ref|YP_002541389.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726703|gb|ACM29792.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 160 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 74/128 (57%), Gaps = 5/128 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+D +VG+++R+ R+ +SQ +LG + +++QQ+QKYE G NR+ AS L I+ L Sbjct: 31 HPIDRHVGQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYEIANCLNV 90 Query: 69 PISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 PIS F++ P + + E + + +++T +G + +++ ++R + L++ Sbjct: 91 PISRFYEGLPQAGSELVNGGLPEIDERIAYLATSEGRRFVEEILRLP-PRLRTRTFALIQ 149 Query: 125 SIVSSEKK 132 + +++ Sbjct: 150 VLTGDDEE 157 >gi|167645114|ref|YP_001682777.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167347544|gb|ABZ70279.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 120 Score = 86.0 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 50/119 (42%), Positives = 80/119 (67%), Gaps = 5/119 (4%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 +RR +LG+SQE L + LG+TFQQVQKYE+G NRV AS+L I++ L+ P+S+FFD Sbjct: 1 MRRKMLGVSQEALADALGLTFQQVQKYERGANRVSASKLYEIAKTLQVPVSYFFDGLADP 60 Query: 81 CSDISSE-----ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 ++ E E V +F++TP+GL+L F +I +VR+++++LVR++ E + + Sbjct: 61 MTNDVDEVGAAAERVVTEFLNTPEGLELAEMFPKIGRGRVRRQVLDLVRAMAEDETREK 119 >gi|302381344|ref|YP_003817167.1| hypothetical protein Bresu_0229 [Brevundimonas subvibrioides ATCC 15264] gi|302191972|gb|ADK99543.1| helix-turn-helix domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 139 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 4/131 (3%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PVD +VG+R+ +R+ LG +Q LG LG+TFQQ+QKYEKG NR+ AS+L I+ + Sbjct: 10 PHPVDRHVGRRVCEKRISLGYNQSDLGRALGLTFQQIQKYEKGANRISASKLWDIARFFK 69 Query: 68 SPISFFFDV---SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +++FF +D + DF ST +++ R Q+ + ++ ++++R Sbjct: 70 VDVAYFFQGLNNEQPGVADGAGPAAFEHDFPSTRHTIEIARLAPQLSSRQ-QKLALDMIR 128 Query: 125 SIVSSEKKYRT 135 + Sbjct: 129 EMAGKADADAA 139 >gi|218678050|ref|ZP_03525947.1| transcriptional regulator, XRE family protein [Rhizobium etli CIAT 894] Length = 125 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 58/113 (51%), Positives = 77/113 (68%), Gaps = 5/113 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K PN +D VG RIR RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTPNAIDGYVGARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFFDVSPTVC-----SDISSEENNVMDFISTPDGLQLNRYFIQID 111 EVL + SFFF+ + D+ + + V +F+ T +GL LNR F++ Sbjct: 62 EVLHTSPSFFFEQENSEPLTLQGLDLPANTDPVAEFLRTKEGLVLNRAFLRSP 114 >gi|170748847|ref|YP_001755107.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170655369|gb|ACB24424.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 143 Score = 85.6 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 4/133 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K D +G RI R+ G+SQ LG+ +G++FQQVQKYEKG NR+GA RLQ I+++ Sbjct: 8 KSATETDRTIGGRIAALRVAQGLSQTDLGQAIGVSFQQVQKYEKGRNRIGAGRLQAIADL 67 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L+ P+ FF D P ++L F I D R I+ +V++ Sbjct: 68 LKVPVDTFFADPRDTGGGRVGPAALFED----PKVMELVLAFTSITDETTRGGILSIVKA 123 Query: 126 IVSSEKKYRTIEE 138 + ++ + Sbjct: 124 AAALQESRAGAQR 136 >gi|222081446|ref|YP_002540809.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726125|gb|ACM29214.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 222 Score = 85.3 bits (209), Expect = 2e-15, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 74/128 (57%), Gaps = 5/128 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+D +VG+++R+ R+ +SQ +LG + +++QQ+QKYE G NR+ AS L I+ L Sbjct: 73 HPIDRHVGQQLRIIRIHSNLSQTELGHKVDLSYQQIQKYESGKNRMSASVLYEIANCLNV 132 Query: 69 PISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 PIS F+D P + + E + + +++T +G + +++ ++R + L++ Sbjct: 133 PISRFYDGLPQAGSELVNGGLPEIDERIAYLATSEGRRFVEEILRLP-PRLRTRTFALIQ 191 Query: 125 SIVSSEKK 132 + +++ Sbjct: 192 VLTGDDEE 199 >gi|83859888|ref|ZP_00953408.1| DNA-binding protein, putative [Oceanicaulis alexandrii HTCC2633] gi|83852247|gb|EAP90101.1| DNA-binding protein, putative [Oceanicaulis alexandrii HTCC2633] Length = 130 Score = 84.9 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 48/121 (39%), Positives = 79/121 (65%), Gaps = 2/121 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N +D +VGKRIR RR +LG++Q++L + +GI FQQ+QKYE G NRV ASRL ++E L Sbjct: 1 MTNAIDHHVGKRIRRRRRLLGLTQQQLAQSVGIRFQQIQKYESGANRVSASRLFELAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + P+ +F++ + E EN D +S + L L R + ++ + + R++++EL RS Sbjct: 61 DVPVQYFYEGLQGTGESAAPEGENVAADVLSQKETLDLVRAYYKL-NERPRRRLLELARS 119 Query: 126 I 126 + Sbjct: 120 L 120 >gi|46200999|ref|ZP_00056012.2| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 133 Score = 84.1 bits (206), Expect = 5e-15, Method: Composition-based stats. Identities = 51/124 (41%), Positives = 76/124 (61%), Gaps = 9/124 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R+RLRR ++G+SQE LGE LG+TFQQ+QKYE+G NR+GASRL +S LE P+ + Sbjct: 1 MHVGSRLRLRRTLMGLSQEALGEALGLTFQQIQKYERGANRIGASRLFDLSRALEVPVEY 60 Query: 73 FFDVSPTVCSDIS---------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F+D S +D +S + L L R + +I D+ VR+++ EL Sbjct: 61 FYDEMSADVMAASPRHMVRATEEPAPQRIDPMSKRETLDLVRTYYKIGDLNVRKRVYELA 120 Query: 124 RSIV 127 R++ Sbjct: 121 RALA 124 >gi|167645186|ref|YP_001682849.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167347616|gb|ABZ70351.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 127 Score = 83.7 bits (205), Expect = 7e-15, Method: Composition-based stats. Identities = 42/124 (33%), Positives = 75/124 (60%), Gaps = 1/124 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N +D+ +GKR+R RR +LG +Q++L +G+ FQQ+QKYE G NR+ A+RL +SE L Sbjct: 1 MGNDIDVYLGKRLRRRRRLLGFTQQQLASTVGVRFQQIQKYECGANRISAARLWQLSEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E P+ +F+D + +S E + + + L L R + + + R+++++L +S+ Sbjct: 61 EVPVGYFYDGLSDRTAKDASTEAEGGEMFARKETLDLVRAYYLLG-ERPRRRLLDLAKSL 119 Query: 127 VSSE 130 E Sbjct: 120 NGGE 123 >gi|254420054|ref|ZP_05033778.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196186231|gb|EDX81207.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 142 Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 43/132 (32%), Positives = 76/132 (57%), Gaps = 4/132 (3%) Query: 1 MVGNK-KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K + P+PVD +VG+R++ +R+ LG++Q L +G++FQQVQKYEKG NRV AS+L Sbjct: 6 MAREKLEEPHPVDRHVGRRVQEKRLDLGLTQTALARAVGVSFQQVQKYEKGANRVSASKL 65 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFIS--TPDGLQLNRYFIQIDDVKVRQ 117 ++E ++ I FFF + EE D T +++ R ++ + ++ Sbjct: 66 FEMAEFMKVDIPFFFQGFHDAQPGVGEEEAPGFDHEHKPTKHSVEIARLAPRLP-ARNQK 124 Query: 118 KIIELVRSIVSS 129 I++++R ++ Sbjct: 125 LILDMMREMLGE 136 >gi|222082679|ref|YP_002542044.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221727358|gb|ACM30447.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 140 Score = 83.3 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 3/120 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD VG++IRL R MSQE L +CLG+TFQQVQKYE G NRV AS+L I+ L+ Sbjct: 21 HPVDTYVGQQIRLARKQQRMSQEALAKCLGVTFQQVQKYEIGANRVSASKLFEIATALQR 80 Query: 69 PISFFFDV--SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+S+FF+ + E +V T +G +L + F+ VR+ ++ L+ S+ Sbjct: 81 PVSYFFEGFANAAERDPTDVERESVTVIQYTAEGRRLAKAFVAAM-PDVRKAVVGLLESM 139 >gi|218674449|ref|ZP_03524118.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 174 Score = 82.6 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 49/132 (37%), Positives = 77/132 (58%), Gaps = 5/132 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 37 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 96 Query: 69 PISFFFDVSPTVC----SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+S FF+ P I +E + + +IST +G +L + + +VR +++ LV Sbjct: 97 PVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRLIDDVL-LLSPRVRSRVVALVS 155 Query: 125 SIVSSEKKYRTI 136 SIV E + + Sbjct: 156 SIVEEEMEEQKP 167 >gi|329848346|ref|ZP_08263374.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328843409|gb|EGF92978.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 115 Score = 82.6 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 43/114 (37%), Positives = 73/114 (64%), Gaps = 3/114 (2%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD---VS 77 +RR +G+SQ+ LG+ +G+TFQQVQKYE+G NR+ AS+L HI +VL+ PI +FFD Sbjct: 1 MRRKFMGISQQVLGDSIGLTFQQVQKYERGSNRISASKLWHIGQVLKVPIDYFFDGFAGG 60 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 E + F++T +G++L F ++ K+R+K+++LV+++ + Sbjct: 61 EAPEDAPGGTEAKINAFLTTTEGIELAEVFPKVSGPKLRRKVLDLVKALADDSE 114 >gi|304321344|ref|YP_003854987.1| DNA-binding protein [Parvularcula bermudensis HTCC2503] gi|303300246|gb|ADM09845.1| DNA-binding protein, putative [Parvularcula bermudensis HTCC2503] Length = 128 Score = 82.6 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 79/128 (61%), Gaps = 6/128 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +P+D +VG+R+R RR +LGM+Q++L E +GI FQQ+QKYE G NRV ASRL ++E L Sbjct: 1 MAHPIDSHVGRRLRQRRSLLGMTQQRLAESVGIKFQQIQKYESGANRVSASRLWALAEAL 60 Query: 67 ESPISFFFDV-----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 E P+S+FF+ + + + + ++ + + L R + + + R+++++ Sbjct: 61 EVPVSYFFEGLSSPEMEESTAAKAEADTISPEVLTNKETIDLIRAYYGLKEG-PRRRLLD 119 Query: 122 LVRSIVSS 129 L +++ + Sbjct: 120 LAKTLAGA 127 >gi|16126569|ref|NP_421133.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235351|ref|YP_002517788.1| HTH transcriptional regulator [Caulobacter crescentus NA1000] gi|13423855|gb|AAK24301.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220964524|gb|ACL95880.1| HTH transcriptional regulator [Caulobacter crescentus NA1000] Length = 135 Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 42/102 (41%), Positives = 70/102 (68%), Gaps = 1/102 (0%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +PVD+ VG R+R+RR ++G+SQ ++ + LGITFQQ+QKYE+G NR+ AS+L +++L+ Sbjct: 10 AHPVDLYVGARLRIRRKMMGLSQTQVADALGITFQQIQKYERGANRISASKLYDAAKLLQ 69 Query: 68 SPISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFI 108 +P+S+FF+ + + +F+STP+GL+L F Sbjct: 70 APVSYFFEGLEDTDGGVDDGFAQRMTEFVSTPEGLELASLFP 111 >gi|114798925|ref|YP_758959.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739099|gb|ABI77224.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 132 Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 41/126 (32%), Positives = 75/126 (59%), Gaps = 4/126 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + D++VGKR+R RR +LGM+Q+ L +G+ FQQ+QKYE G NR+ ASRL ++ + Sbjct: 1 MADETDLHVGKRLRRRRRLLGMTQQDLASQVGVRFQQIQKYECGANRITASRLYDLARAM 60 Query: 67 ESPISFFFDVS---PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + +F+D TV + + E D +S + L+L R + ++ + R++++EL Sbjct: 61 NVSVQYFYDGMVVPGTVPNAANDAEQMEGDILSQKETLELVRAYYRL-SERPRRRLLELA 119 Query: 124 RSIVSS 129 +++ Sbjct: 120 KALEQD 125 >gi|307942085|ref|ZP_07657436.1| Cro/CI family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307774371|gb|EFO33581.1| Cro/CI family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 126 Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 2/126 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + PNPVD VG R+R RR L MSQE L + LG +FQQ+QKYE G NR+ A RL I+ Sbjct: 2 TTRKPNPVDTYVGIRVRQRRQALNMSQETLADKLGTSFQQLQKYENGTNRISAGRLHAIA 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L + F++ P ++ ++ + ++ P L F + R ++ + Sbjct: 62 SALGATPGHFYEGLPDAPEEVETDLDVQK-LLTIPGATDLLMTFSRCTGNAQR-SLVNVA 119 Query: 124 RSIVSS 129 + ++ Sbjct: 120 EAAATT 125 >gi|163852933|ref|YP_001640976.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|163664538|gb|ABY31905.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] Length = 135 Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 52/130 (40%), Positives = 74/130 (56%), Gaps = 3/130 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K D G+RI++ R G+SQ LG L +TFQQ+QKYE GVNRVGASRL ++ V Sbjct: 9 KRVTEQDRLDGQRIKMLRKSKGISQSVLGRALSVTFQQIQKYENGVNRVGASRLSEVARV 68 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE P+S FF+ + E +F+ P + L FI I+D ++R++++ LVRS Sbjct: 69 LEVPVSTFFEEGSGLVEQGQKEA---FEFLRVPGAVDLLNAFITIEDDRLRREVLALVRS 125 Query: 126 IVSSEKKYRT 135 E+ T Sbjct: 126 ATRREQDQGT 135 >gi|218507453|ref|ZP_03505331.1| transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 111 Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 54/111 (48%), Positives = 74/111 (66%), Gaps = 5/111 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITFQQ+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQHGLAELLGITFQQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 L P+ FFF+ I E + + F+S+ +GL LN+ ++ ++R Sbjct: 64 LRVPVGFFFE--NGGSGPIEGETSELNKFLSSKEGLALNK---RLSPSRIR 109 >gi|148254259|ref|YP_001238844.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146406432|gb|ABQ34938.1| putative transcriptional regulatory protein [Bradyrhizobium sp. BTAi1] Length = 131 Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 55/120 (45%), Positives = 83/120 (69%), Gaps = 6/120 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI +GKRIRLRR+ +SQ +LGE LG++FQQVQKYEKGVNRVGA+RLQ I+ L+ P++ Sbjct: 18 DIELGKRIRLRRVEQKISQAELGEKLGVSFQQVQKYEKGVNRVGAARLQQIATALDVPVT 77 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF+D D + E + F+ + L+L R + +I D V+++++ L+ SI ++E+ Sbjct: 78 FFYDG------DNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLVALMESIAANEE 131 >gi|189184272|ref|YP_001938057.1| hypothetical protein OTT_1365 [Orientia tsutsugamushi str. Ikeda] gi|189181043|dbj|BAG40823.1| hypothetical protein OTT_1365 [Orientia tsutsugamushi str. Ikeda] Length = 146 Score = 81.4 bits (199), Expect = 3e-14, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 80/139 (57%), Gaps = 11/139 (7%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + + +D+ V KR+++RR+ILG+SQ+KL E + ++ QQ+QKYEK NR+ + +L + Sbjct: 8 NSNTKVDSIDLYVSKRLKMRRVILGLSQKKLAEAVDVSIQQIQKYEKSTNRISSGKLYSL 67 Query: 63 SEVLESPISFFFDVSPTVCS-----------DISSEENNVMDFISTPDGLQLNRYFIQID 111 + +L+ PI +FF+ + + E D ++ + L L + F ++ Sbjct: 68 ANLLKVPIGYFFENASSYTDCKNNVNTISVFAEDQENFLSDDTVTEKEVLNLIKAFNEVK 127 Query: 112 DVKVRQKIIELVRSIVSSE 130 + VR+KII+LV+SI + E Sbjct: 128 NSHVRKKIIDLVKSIKAME 146 >gi|222825161|dbj|BAH22318.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 133 Score = 81.4 bits (199), Expect = 3e-14, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 67/121 (55%), Gaps = 5/121 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+D +G+RIR RR++ G SQ LG+ LGI+FQ +Q YE G R+ RL ++E L Sbjct: 5 HPIDKQIGERIRKRRLMCGFSQRDLGKKLGISFQHIQGYETGEVRLIVDRLYKLAEALSV 64 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 +S+FF + D + + + IS L R + +I D +R + +++++ + Sbjct: 65 DMSYFFTKASEDLHDKAFRSDVGSEEISR-----LVREYRKIKDEALRDIVHLVIKALAN 119 Query: 129 S 129 + Sbjct: 120 T 120 >gi|254487347|ref|ZP_05100552.1| transcriptional Regulator, XRE family [Roseobacter sp. GAI101] gi|214044216|gb|EEB84854.1| transcriptional Regulator, XRE family [Roseobacter sp. GAI101] Length = 121 Score = 81.4 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 10/122 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VGK+++ R + +SQ + + L ++FQQ+QKYE G NRV ASRL ++++L Sbjct: 3 MSHPVDIHVGKKLKQIRTLRRLSQTDVAKQLKLSFQQIQKYEIGSNRVAASRLFELAQIL 62 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + SFFF+ +D + +++ I D ++ +I+ + I Sbjct: 63 DVSPSFFFEGLHDNTNDAPK----------SDPSIEIVSALASIKDDAIKSRIVTFIEDI 112 Query: 127 VS 128 Sbjct: 113 SG 114 >gi|83941543|ref|ZP_00954005.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] gi|83847363|gb|EAP85238.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] Length = 119 Score = 81.4 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 10/123 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VGK+++ R + +SQ + + L ++FQQ+QKYE G NRV ASRL +S++L Sbjct: 1 MSHPVDIHVGKKLKQIRTLRRLSQTDVAKRLNLSFQQIQKYEIGSNRVAASRLFELSQIL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + ++FF+ +D + +++ I+D ++ +I+ + + Sbjct: 61 DVTPAYFFEGLHDNTNDAPKAD----------PSIEIVSALAAINDDALKTRIVTFIEDV 110 Query: 127 VSS 129 Sbjct: 111 SGL 113 >gi|146339475|ref|YP_001204523.1| putative transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146192281|emb|CAL76286.1| putative transcriptional regulatory protein [Bradyrhizobium sp. ORS278] Length = 131 Score = 81.0 bits (198), Expect = 4e-14, Method: Composition-based stats. Identities = 55/120 (45%), Positives = 83/120 (69%), Gaps = 6/120 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI +GKRIRLRR+ +SQ +LGE LG++FQQVQKYEKGVNRVGA+RLQ I+ L+ P++ Sbjct: 18 DIELGKRIRLRRVEQKISQAELGEKLGVSFQQVQKYEKGVNRVGAARLQQIATALDVPVT 77 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF+D D + E + F+ + L+L R + +I D V+++++ L+ SI ++E+ Sbjct: 78 FFYDG------DNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLVSLMESIAANEE 131 >gi|148284085|ref|YP_001248175.1| putative transcriptional regulator [Orientia tsutsugamushi str. Boryong] gi|146739524|emb|CAM79234.1| putative transcriptional regulator [Orientia tsutsugamushi str. Boryong] Length = 146 Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 44/139 (31%), Positives = 80/139 (57%), Gaps = 11/139 (7%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + + +D+ V KR+++RR+ILG+SQ+KL E + ++ QQ+QKYEK NR+ + +L + Sbjct: 8 NSNTKVDSIDLYVSKRLKMRRVILGLSQKKLAEAVDVSIQQIQKYEKSTNRISSGKLYSL 67 Query: 63 SEVLESPISFFFDVSPTVCS-----------DISSEENNVMDFISTPDGLQLNRYFIQID 111 + +L+ PI +FF+ + + E D ++ + L L + F ++ Sbjct: 68 ANLLKVPIGYFFENASSYTDCKNNVNTISIFAEDQENFLSDDTVTEKEVLNLIKAFNEVK 127 Query: 112 DVKVRQKIIELVRSIVSSE 130 + VR+KII+LV+SI + E Sbjct: 128 NSHVRKKIIDLVKSIKAME 146 >gi|83855020|ref|ZP_00948550.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83842863|gb|EAP82030.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 119 Score = 81.0 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 10/123 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VGK+++ R + +SQ + + L ++FQQ+QKYE G NRV ASRL +S++L Sbjct: 1 MSHPVDIHVGKKLKQIRTLRRLSQTDVAKRLNLSFQQIQKYEIGSNRVAASRLFELSQIL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + ++FF+ +D + +++ I+D ++ +I+ + + Sbjct: 61 DVTPAYFFEGLHDNTNDAPKAD----------PSIEIVNALAAINDDALKTRIVTFIEDV 110 Query: 127 VSS 129 Sbjct: 111 SGL 113 >gi|329891162|ref|ZP_08269505.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328846463|gb|EGF96027.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 122 Score = 80.6 bits (197), Expect = 6e-14, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 62/124 (50%), Gaps = 4/124 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + + +D VG RI RR LG SQ LG LG++FQQ+QKYE G NRV ASRL + Sbjct: 3 RRSHHIDQAVGLRIAARRSALGWSQSVLGRELGVSFQQIQKYETGANRVSASRLHQAATA 62 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + ++ FF E V +++ +G L F +I D R+ + + ++ Sbjct: 63 MGCSVADFF----PARPSAEGEVELVHPVLASAEGRGLAEAFARIPDAGARRALTRVAQA 118 Query: 126 IVSS 129 + + Sbjct: 119 MAGA 122 >gi|114571049|ref|YP_757729.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114341511|gb|ABI66791.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 128 Score = 80.6 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 43/124 (34%), Positives = 82/124 (66%), Gaps = 2/124 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +D++VGKR+R RR +LG++Q++L E +GI FQQ+QKYE G NRV ASRL ++E L Sbjct: 1 MTSDIDLHVGKRLRRRRRLLGLTQQQLAESVGIRFQQIQKYECGANRVSASRLFELAESL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P+ +F++ + +++ ++ D +S + + L R + ++ + R++++EL +S+ Sbjct: 61 DVPVQYFYEGL-SKRDEVNGDDTLAADVLSQKETVDLIRAYYRLG-ERPRKRLLELAKSL 118 Query: 127 VSSE 130 E Sbjct: 119 EPEE 122 >gi|163744744|ref|ZP_02152104.1| HTH-type transcriptional regulator, putative [Oceanibulbus indolifex HEL-45] gi|161381562|gb|EDQ05971.1| HTH-type transcriptional regulator, putative [Oceanibulbus indolifex HEL-45] Length = 127 Score = 80.2 bits (196), Expect = 8e-14, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 11/122 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVDI+VG+R++ R + SQ + L ++FQQ+QKYE G NR+ ASRL ++ +L Sbjct: 10 MSHPVDIHVGRRLKQARTLRKQSQTDVARELKLSFQQIQKYEIGSNRIAASRLHELARIL 69 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + +FF+ + ++ L + I D +R +I+ + + Sbjct: 70 DVTPGYFFEGLNDDAPETKNDP-----------ALDIVNAIGSIKDDAIRARILTFIEDV 118 Query: 127 VS 128 Sbjct: 119 AG 120 >gi|288960030|ref|YP_003450370.1| transcriptional regulator [Azospirillum sp. B510] gi|288912338|dbj|BAI73826.1| transcriptional regulator [Azospirillum sp. B510] Length = 196 Score = 80.2 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 6/129 (4%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K+ N VD+ VG+R+R RM+ G+SQ + LG+TFQQ+QKYE+G NRV +SRL + Sbjct: 38 EKKEGLNEVDVFVGQRLRELRMLAGLSQSDVASALGLTFQQLQKYERGFNRVSSSRLFTL 97 Query: 63 SEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + P+S FF+ ++ + + + + L L RYF I D +R Sbjct: 98 GQFFRVPVSVFFEGLENREPVAEGGVRPAAGGEEQENTLQSREALMLARYFQSIRDPHIR 157 Query: 117 QKIIELVRS 125 I EL Sbjct: 158 GAIRELAER 166 >gi|218675040|ref|ZP_03524709.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 180 Score = 79.9 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 48/129 (37%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 47 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 106 Query: 69 PISFFFDVSPTVC----SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+S FF+ P +E + + +IST +G +L + + +VR +++ LV Sbjct: 107 PVSRFFEGLPDPETTQGQQFITEIDGKIAYISTAEGRRLIDDVL-LLSPRVRSRVVALVS 165 Query: 125 SIVSSEKKY 133 SIV E + Sbjct: 166 SIVDEEMEE 174 >gi|296114432|ref|ZP_06833086.1| HTH-type transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295979193|gb|EFG85917.1| HTH-type transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 207 Score = 79.9 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 52/99 (52%), Positives = 64/99 (64%), Gaps = 2/99 (2%) Query: 2 VGNK--KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 + NK P+PVD+ VG RIRLRR +LGMSQE+LG LG+TFQQVQKYE+G NRVGASRL Sbjct: 1 MNNKLSSTPSPVDVYVGSRIRLRRTLLGMSQERLGTALGLTFQQVQKYERGANRVGASRL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 ++ VL+ PI+FFFD P + F Sbjct: 61 YDLARVLDVPIAFFFDGMPDEAAIAPVASMPAESFAEAR 99 >gi|163868999|ref|YP_001610229.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018676|emb|CAK02234.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 79.9 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K N VD ++G RIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG+NRV A L I++ Sbjct: 10 TKNSNFVDTSIGARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIAQ 69 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L+ PISFF+ T ++ I + L + F ++ K ++ I+ L+ Sbjct: 70 KLQVPISFFYADLLTTDIATKENLSHCNQDIYSEKEHALLKNFREL-QPKKQKAILWLL 127 >gi|218681208|ref|ZP_03529105.1| putative transcriptional regulator protein [Rhizobium etli CIAT 894] Length = 170 Score = 79.9 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 5/129 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 37 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 96 Query: 69 PISFFFDVSPTVC----SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+S FF+ P I +E + + +IST +G +L + + +VR +++ LV Sbjct: 97 PVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRLIDDVL-LLSPRVRSRVVALVS 155 Query: 125 SIVSSEKKY 133 SIV E + Sbjct: 156 SIVDEEMEE 164 >gi|163868981|ref|YP_001610211.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018658|emb|CAK02216.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 79.9 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 69/119 (57%), Gaps = 1/119 (0%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K N VD ++G RIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG+NRV A L I++ Sbjct: 10 TKNSNFVDTSIGARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIAQ 69 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L+ PISFF+ T ++ + + L + F ++ K ++ I+ L+ Sbjct: 70 KLQVPISFFYADLLTADIATKENPSHHDQYTYSEKEHALLKNFREL-QPKKQKAILWLL 127 >gi|190894160|ref|YP_001984454.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190699821|gb|ACE93904.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 170 Score = 79.9 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 5/129 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 37 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 96 Query: 69 PISFFFDVSPTVC----SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+S FF+ P I +E + + +IST +G +L + + +VR +++ LV Sbjct: 97 PVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRLIDDVL-LLSPRVRSRVVALVS 155 Query: 125 SIVSSEKKY 133 SIV E + Sbjct: 156 SIVDEEMEE 164 >gi|58699289|ref|ZP_00374080.1| transcriptional regulator [Wolbachia endosymbiont of Drosophila ananassae] gi|58534197|gb|EAL58405.1| transcriptional regulator [Wolbachia endosymbiont of Drosophila ananassae] Length = 124 Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 68/121 (56%), Gaps = 5/121 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+D +G+RIR RR++ G SQ LG+ L I+FQ VQ YE G R+ RL ++EVL Sbjct: 5 HPIDKQIGERIRKRRLMCGFSQRDLGKKLEISFQHVQGYESGEIRLVVDRLYKLAEVLSV 64 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 +S+FF + D + + + IS L R + +I+D +R + +++++ + Sbjct: 65 DMSYFFTKASEDLHDKAFHSDVGSEEISR-----LVREYRKIEDETLRDIVHLVIKALAN 119 Query: 129 S 129 + Sbjct: 120 T 120 >gi|21492787|ref|NP_659862.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] gi|21467212|gb|AAM54875.1| putative transcriptional regulator protein [Rhizobium etli CFN 42] Length = 161 Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 5/129 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 28 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 87 Query: 69 PISFFFDVSPTVC----SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+S FF+ P I +E + + +IST +G +L + + +VR +++ LV Sbjct: 88 PVSRFFEGLPDPETTQGQQIITEIDEKIAYISTAEGRRLIDDVL-LLSPRVRSRVVALVS 146 Query: 125 SIVSSEKKY 133 SIV E + Sbjct: 147 SIVDEEMEE 155 >gi|218510475|ref|ZP_03508353.1| probable transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 98 Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 49/95 (51%), Positives = 64/95 (67%), Gaps = 1/95 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K PN +D VG RIR RR +LGMSQE+L E +G+TFQQVQKYEKG+NR+GASRLQ I+ Sbjct: 2 NVKTPNAIDSYVGARIRTRRQLLGMSQERLAEQIGVTFQQVQKYEKGINRIGASRLQRIA 61 Query: 64 EVLESPISFFFD-VSPTVCSDISSEENNVMDFIST 97 EVL + SFFF+ + + + D ++ Sbjct: 62 EVLHTSPSFFFEQGDSGPVAVRGLDGPDHTDPVAE 96 >gi|16519652|ref|NP_443772.1| uncharacterized transcription regulator (Cro/CI family) [Sinorhizobium fredii NGR234] gi|2496579|sp|P55360|Y4AM_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator y4aM gi|2182302|gb|AAB91610.1| uncharacterized transcription regulator (Cro/CI family) [Sinorhizobium fredii NGR234] Length = 143 Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 57/135 (42%), Positives = 81/135 (60%), Gaps = 7/135 (5%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + N VDI VG+RIR RR MSQ LGE +G+TFQQVQKYEKG NRVGA RLQ I Sbjct: 8 KKRAKANAVDIYVGRRIRQRRRWQNMSQAALGEAIGVTFQQVQKYEKGSNRVGAGRLQQI 67 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVM-------DFISTPDGLQLNRYFIQIDDVKV 115 S+ LE S+FF+ P I N +F ++ +G++L R F ++ ++ V Sbjct: 68 SDALEVHPSYFFEDMPDDTQSIGQGAPNQAYIPPEVIEFAASDEGVELIRAFSRVGNLNV 127 Query: 116 RQKIIELVRSIVSSE 130 R +I++L++S+ + Sbjct: 128 RCRIVKLLKSLGEHD 142 >gi|27377896|ref|NP_769425.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27351042|dbj|BAC48050.1| bll2785 [Bradyrhizobium japonicum USDA 110] Length = 134 Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 55/119 (46%), Positives = 83/119 (69%), Gaps = 6/119 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI +GKRIRLRR+ + +SQ +LGE LG++FQQVQKYEKGVNRVGA+RLQ I+ L+ P++ Sbjct: 21 DIELGKRIRLRRVEMKISQAELGEKLGVSFQQVQKYEKGVNRVGAARLQQIATALDVPVT 80 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FF+D D + E + F+ + L+L R + +I D V+++++ L+ SI ++E Sbjct: 81 FFYDG------DNKAREVESLLFLDSAFSLRLLRAYSKIKDQTVQRQLVSLMESIAANE 133 >gi|329847359|ref|ZP_08262387.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328842422|gb|EGF91991.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 116 Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 4/115 (3%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 +RR LGMSQE L E + +TFQQVQKYE+G NR+ AS+L I+ L++P+++FF+ Sbjct: 1 MRRKFLGMSQEGLAEVIDLTFQQVQKYERGSNRISASKLYEIARALKAPVAYFFEGYGET 60 Query: 81 CS----DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + S E V F+ T +G++L F +I K+R+K++ELVR + SE Sbjct: 61 EAVEGFSESESEQFVHGFLMTTEGIELAEAFPRIRSAKLRRKVLELVRVLGESED 115 >gi|110678693|ref|YP_681700.1| HTH-type transcriptional regulator, putative [Roseobacter denitrificans OCh 114] gi|109454809|gb|ABG31014.1| HTH-type transcriptional regulator, putative [Roseobacter denitrificans OCh 114] Length = 119 Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 10/122 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD +VG++++ R + +SQ + L ++FQQ+QKYE G NR+ ASRL +S + Sbjct: 1 MSHPVDAHVGRKLKQIRTMRRLSQTDVARELNLSFQQIQKYEIGSNRIAASRLYELSRIF 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P S+FF+ + ++ ++ I D V+ +I+ + + Sbjct: 61 DVPTSYFFEGLDAATKTTCERDPSM----------EIVTALANIRDDSVKSRIVTFIEDV 110 Query: 127 VS 128 Sbjct: 111 SG 112 >gi|295690474|ref|YP_003594167.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432377|gb|ADG11549.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 135 Score = 79.1 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 41/102 (40%), Positives = 70/102 (68%), Gaps = 1/102 (0%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +PVD+ VG R+R+RR ++G+SQ ++ + LGITFQQ+QKYE+G NR+ AS+L +++L+ Sbjct: 10 AHPVDLYVGARLRIRRKMMGLSQTQVADALGITFQQIQKYERGANRISASKLYDAAKLLQ 69 Query: 68 SPISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFI 108 +P+S+F++ + + +F+STP+GL+L F Sbjct: 70 APVSYFYEGLEDTDGGLDDGFAQRMTEFVSTPEGLELAGLFP 111 >gi|254418112|ref|ZP_05031836.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196184289|gb|EDX79265.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 124 Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 6/124 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +K +P+DI VG RIR R G+SQ LG+ +GITFQQVQKYE G NRV AS+L I+ Sbjct: 2 EKQVHPIDIQVGARIRTFREAAGISQHHLGKDIGITFQQVQKYETGANRVSASKLYLIAR 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L I+ E ++ +L + QID + R +I++ + Sbjct: 62 RLGVSIAEIIGEVEDGERATVVES------LTVARTHELLAAWNQIDTPEKRALLIDVAQ 115 Query: 125 SIVS 128 + + Sbjct: 116 TFAA 119 >gi|163868997|ref|YP_001610227.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018674|emb|CAK02232.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K N VD ++G RIR RR+ +G+SQ+ LG LG++FQQVQKYEKG+NRV A L I++ Sbjct: 10 TKNSNFVDTSIGARIRHRRISMGLSQKALGNTLGVSFQQVQKYEKGLNRVSAGCLLEIAQ 69 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L+ PISFF+ T ++ + L + F ++ K ++ I+ L+ Sbjct: 70 KLQVPISFFYADLLTTDIATKENLSHCNQDTYSEKEHALLKNFREL-QPKKQKAILCLL 127 >gi|167647751|ref|YP_001685414.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167350181|gb|ABZ72916.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 129 Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 6/131 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + P+P+D+ VG RIR++R L +SQ+ L + LG+TFQQVQKYE+G NRV AS L Sbjct: 1 MNTPTGPDPIDVAVGTRIRVQRRHLKISQDDLAQVLGLTFQQVQKYERGTNRVSASMLVR 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L++ + D++ ++ +STP + L R + Q K R+ I+ Sbjct: 61 IAAKLQTTVGSLVGEDVVAEQDVA-----MLTALSTPGAIDLLRAYGQAT-PKGRKAILN 114 Query: 122 LVRSIVSSEKK 132 + R++V + Sbjct: 115 VARTLVEPDDS 125 >gi|218512667|ref|ZP_03509507.1| probable transcriptional regulator protein [Rhizobium etli 8C-3] Length = 108 Score = 78.7 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 55/103 (53%), Positives = 76/103 (73%), Gaps = 6/103 (5%) Query: 33 LGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI------SS 86 L + LGITFQQ+QKYEKG NRVGASRLQ+IS +L P+SFFF+ +P S +S Sbjct: 2 LAKALGITFQQIQKYEKGTNRVGASRLQNISSILNVPVSFFFEDAPGEHSGAIGGMAEAS 61 Query: 87 EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 N V+DF+S+ +GLQLNR F++I D KVR+K++ELV+++ + Sbjct: 62 SSNYVVDFLSSSEGLQLNRAFVKISDPKVRRKVVELVKALAAE 104 >gi|218507310|ref|ZP_03505188.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 166 Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 48/129 (37%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ L+ Sbjct: 37 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKI 96 Query: 69 PISFFFDVSPTVC----SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+S FF+ P +E + + +IST +G +L + + +VR +++ LV Sbjct: 97 PVSRFFEGLPDPETLQGQQFITEIDEKIAYISTAEGRRLIDDVL-LLSPRVRSRVVALVS 155 Query: 125 SIVSSEKKY 133 SIV E + Sbjct: 156 SIVDEEMEE 164 >gi|190895203|ref|YP_001985496.1| putative transcriptional regulator [Rhizobium etli CIAT 652] gi|190700864|gb|ACE94946.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 162 Score = 78.7 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 49/135 (36%), Positives = 80/135 (59%), Gaps = 5/135 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 ++ +PVD++VG++IR+RRM +S LG +G++ QQVQKYE G NRV AS L ++ Sbjct: 25 RESAHPVDLHVGQQIRIRRMQSDVSLGDLGAGIGVSLQQVQKYESGKNRVSASMLYELAN 84 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMD----FISTPDGLQLNRYFIQIDDVKVRQKII 120 L+ P+S FF+ P + + +D +IST +G +L + + +VR +++ Sbjct: 85 CLKIPVSKFFEGLPDPETSQDAIHATKIDDRIAYISTAEGRRLIEDVLLLP-ARVRSRVV 143 Query: 121 ELVRSIVSSEKKYRT 135 LV SIV E K ++ Sbjct: 144 ALVSSIVDEEMKEQS 158 >gi|240851106|ref|YP_002972508.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268229|gb|ACS51817.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 157 Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 47/120 (39%), Positives = 71/120 (59%), Gaps = 2/120 (1%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ +DI +GKRIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG+NRV A L I++ Sbjct: 37 TKNPHFIDILIGKRIRHRRISMGLSQKALGSHLGVSFQQIQKYEKGLNRVSAKCLLEIAQ 96 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFIS-TPDGLQLNRYFIQIDDVKVRQKIIELV 123 LE PISFF+ + E D + + L + F ++ K ++ I+ L+ Sbjct: 97 KLEVPISFFYADIAIKEDLSTKETLLHHDQCTYSEKEHTLLKNFRELKS-KKQKAILWLI 155 >gi|163733855|ref|ZP_02141297.1| HTH-type transcriptional regulator, putative [Roseobacter litoralis Och 149] gi|161392966|gb|EDQ17293.1| HTH-type transcriptional regulator, putative [Roseobacter litoralis Och 149] Length = 119 Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 10/122 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD +VG++++ R + +SQ + L ++FQQ+QKYE G NR+ ASRL +S + Sbjct: 1 MSHPVDAHVGRKLKQIRTMRRLSQTDVARELNLSFQQIQKYEIGSNRIAASRLYELSRIF 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P S+FF+ + ++ ++ I D V+ +I+ + + Sbjct: 61 DVPTSYFFEGLDAATKTTCERDPSM----------EIVTALANIRDDSVKSRIVTFIEDV 110 Query: 127 VS 128 Sbjct: 111 SG 112 >gi|254295424|ref|YP_003061447.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043955|gb|ACT60750.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 141 Score = 78.3 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 55/133 (41%), Positives = 79/133 (59%), Gaps = 5/133 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K+PN +D +VG+R+R RR L SQEKLGE LG+TFQQ+QKYEKGVNR+ A RL Sbjct: 1 MSENKLPNSIDKHVGRRVRWRRRELNFSQEKLGELLGLTFQQIQKYEKGVNRISAGRLFE 60 Query: 62 ISEVLESPISFFFDVSPTVCSD-----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 +S VLE+ I +FF + S+++ + + D + L F I D K+R Sbjct: 61 MSRVLETTIGYFFMGVEEMDEAMNRSFAESDKDQALTGLIDADAVDLVVAFQSIPDPKLR 120 Query: 117 QKIIELVRSIVSS 129 Q I+ +VR+ + Sbjct: 121 QSILTMVRNSAEA 133 >gi|302383125|ref|YP_003818948.1| hypothetical protein Bresu_2014 [Brevundimonas subvibrioides ATCC 15264] gi|302193753|gb|ADL01325.1| helix-turn-helix domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 130 Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 69/123 (56%), Gaps = 5/123 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D++VG+++ R ++G+SQ +G +G+TFQQVQKYE+G NR+ AS L ++E L P+ Sbjct: 13 LDVHVGRQLIAARTLMGLSQSDVGRLVGVTFQQVQKYERGTNRISASVLWTLAEKLNLPV 72 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 ++FF+ + G+++ F ++ K ++ +++L RS SS+ Sbjct: 73 TYFFEGLDEGTVRTPDFVFASLG----KVGVEMADAFAKL-SPKRQRLLLDLARSFASSD 127 Query: 131 KKY 133 Sbjct: 128 DSR 130 >gi|254419275|ref|ZP_05032999.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196185452|gb|EDX80428.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 118 Score = 77.9 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 64/119 (53%), Gaps = 2/119 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D VG RI RR LG+SQ LG +G++ QQVQKYE G NR+ ASRL +++ L P+ Sbjct: 1 MDAVVGARIASRRTALGLSQTALGALIGVSCQQVQKYEGGQNRISASRLHNLALALGLPV 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 FF E + + +TP+G + F +I+D VRQ + LV + + Sbjct: 61 GAFF--PEPADEAEIPELSMMRTMAATPEGRAMAAGFSRIEDRAVRQALTRLVEVLSRA 117 >gi|255263044|ref|ZP_05342386.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] gi|255105379|gb|EET48053.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] Length = 118 Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 8/124 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +PVD++VGKRI+ R++ G SQ ++ L I+FQQ+QKYE G NR+ ASRL +S++ Sbjct: 1 MVHPVDVHVGKRIKEARILRGQSQSEIARELDISFQQIQKYESGKNRISASRLFELSQLF 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 SFFFD + + ++ ++I + + R +I L + + Sbjct: 61 GISPSFFFDGLEEGADERKQP--------MDAETARIALAILKIPNKRTRSLLISLAQEV 112 Query: 127 VSSE 130 E Sbjct: 113 SREE 116 >gi|254419648|ref|ZP_05033372.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196185825|gb|EDX80801.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 139 Score = 77.6 bits (189), Expect = 5e-13, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 6/120 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NPVD++VG+R+ RR L SQ +L + G+TFQQ+QKYE+G NR+ ASRL I+E L Sbjct: 15 NPVDLHVGRRVAERRQALRYSQAQLAQAAGVTFQQIQKYERGSNRIAASRLWEIAEFLNV 74 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 +++FF+ + M T ++ R ++ V+ ++ +++L++ + Sbjct: 75 DLNYFFEGL-----GLPDGPEARMGGAPTKQTAEIARRAPEL-SVRNQKLVLDLIQQLAR 128 >gi|197104103|ref|YP_002129480.1| transcriptional regulator, XRE family [Phenylobacterium zucineum HLK1] gi|196477523|gb|ACG77051.1| transcriptional regulator, XRE family [Phenylobacterium zucineum HLK1] Length = 136 Score = 77.6 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 73/137 (53%), Gaps = 3/137 (2%) Query: 1 MVGN-KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K P+P+DI +G +R+RR +GMSQE L E G++FQQ+QKYE G NR+ SRL Sbjct: 1 MSETSTKAPDPMDIALGAAVRIRRRTIGMSQEALAEQCGVSFQQIQKYENGANRISFSRL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 I+ L ++ DV + +++ + + + TP L+L + ++ + R + Sbjct: 61 VQIARALRCRVTDLMDVFDGPDRETATDLDL-LTRMRTPGALELLAAYERLA-PEARSSL 118 Query: 120 IELVRSIVSSEKKYRTI 136 + L+R++ K Sbjct: 119 VSLLRTVAPERVKESEA 135 >gi|254995332|ref|ZP_05277522.1| hypothetical protein AmarM_05275 [Anaplasma marginale str. Mississippi] Length = 187 Score = 77.6 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 20/164 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +V K P+PVD VG+ I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 16 IVEGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLY 75 Query: 61 HISEVLESPISFFF----------------DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ VL I + + SS E + + L L Sbjct: 76 ELARVLGIEIKDLIAKLQNDLRPITDAGDATDAALREGEESSLEEFGQSYNDGKEVLMLV 135 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEK----KYRTIEEECMVEQ 144 R + +I K+R I LV+ + + ++ ++ +EE E Sbjct: 136 RAYRRIKSDKMRGAIHTLVKVMCAEQQQDDYEHSDADEELGYEH 179 >gi|88607013|ref|YP_505749.1| DNA-binding protein [Anaplasma phagocytophilum HZ] gi|35057062|gb|AAN15209.1| putative transcriptional regulator [Anaplasma phagocytophilum] gi|88598076|gb|ABD43546.1| DNA-binding protein [Anaplasma phagocytophilum HZ] Length = 183 Score = 77.6 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 16/148 (10%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P+PVD VG+ I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 17 IEGKAKPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLYE 76 Query: 62 ISEVLESPISFFFDVSPTV----------------CSDISSEENNVMDFISTPDGLQLNR 105 ++ VL I+ D +S E ++ + L L R Sbjct: 77 LARVLGIEINDLMSKLQNDIRSITEGTDISITCLQEGDEASLEEFDHNYNDGKEVLMLVR 136 Query: 106 YFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + +I K+R I LV+ + + + Sbjct: 137 AYRRIKSEKMRGAIHTLVKVMCAEQSND 164 >gi|218459687|ref|ZP_03499778.1| probable transcriptional regulator protein [Rhizobium etli Kim 5] Length = 104 Score = 77.2 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 52/97 (53%), Positives = 72/97 (74%), Gaps = 6/97 (6%) Query: 39 ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI------SSEENNVM 92 ITFQQ+QKYEKG NRVGASRLQ+IS +L P+SFFF+ +P S +S N V+ Sbjct: 4 ITFQQIQKYEKGTNRVGASRLQNISSILNVPVSFFFEDAPGEHSGAIGGMAETSSSNYVV 63 Query: 93 DFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 DF+S+ +GLQLNR F++I D KVR+K++ELV+++ + Sbjct: 64 DFLSSSEGLQLNRAFVKISDPKVRRKVVELVKALAAE 100 >gi|222825165|dbj|BAH22322.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 120 Score = 77.2 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 66/119 (55%), Gaps = 5/119 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+D +G+RIR RR++ G+SQ LG+ L I+FQ +Q YE G R+ RL +++E L Sbjct: 5 HPIDKQIGERIRKRRLMCGLSQRDLGKKLEISFQHIQGYETGEVRLIVDRLYNLAEALSV 64 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 +S+FF + D + + + + + +L R + +I D + + +++++ Sbjct: 65 DMSYFFTKASEDLHDNAFRSD-----VGSKEISRLVREYRKIKDEILCNIVHSVIKALA 118 >gi|288957911|ref|YP_003448252.1| transcriptional regulator [Azospirillum sp. B510] gi|288910219|dbj|BAI71708.1| transcriptional regulator [Azospirillum sp. B510] Length = 353 Score = 77.2 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 49/126 (38%), Positives = 74/126 (58%), Gaps = 4/126 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VD +VG+R+R+RR +LGMSQEKLGE +G+TFQQVQKYE+G NR+ A L + +VL+ P Sbjct: 124 SVDAHVGQRVRMRRTLLGMSQEKLGEAIGLTFQQVQKYERGSNRISAGTLYRLGQVLDVP 183 Query: 70 ISFFFD---VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +SFFFD + S EE + + + +L R + V +++ L+ ++ Sbjct: 184 VSFFFDTYNDAGPRRSRGGFEEPDDNNSQISRREARLLRLWRAAPS-HVSDEMLSLLSAL 242 Query: 127 VSSEKK 132 K Sbjct: 243 SPEIKD 248 >gi|57239584|ref|YP_180720.1| putative transcriptional regulator [Ehrlichia ruminantium str. Welgevonden] gi|58579573|ref|YP_197785.1| putative transcriptional regulator [Ehrlichia ruminantium str. Welgevonden] gi|38098396|gb|AAR10929.1| hypothetical transcriptional regulator [Ehrlichia ruminantium] gi|57161663|emb|CAH58593.1| putative transcriptional regulator [Ehrlichia ruminantium str. Welgevonden] gi|58418199|emb|CAI27403.1| Hypothetical transcriptional regulator [Ehrlichia ruminantium str. Welgevonden] Length = 201 Score = 77.2 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 17/144 (11%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL ++ Sbjct: 54 KSRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQLAS 113 Query: 65 VLESPISFFFDVSPTVCSDIS-----------------SEENNVMDFISTPDGLQLNRYF 107 VL + +IS I + + L + R + Sbjct: 114 VLNVEVRDIMLKLQEDLKNISCGNDIVSTPSLKDNEEKFVPEFHDSKIDSKEVLMMVRAY 173 Query: 108 IQIDDVKVRQKIIELVRSIVSSEK 131 I + KVR I LV+++ + K Sbjct: 174 TCIKNEKVRNIIYNLVKALSTDNK 197 >gi|56417165|ref|YP_154239.1| hypothetical protein AM1138 [Anaplasma marginale str. St. Maries] gi|255004638|ref|ZP_05279439.1| hypothetical protein AmarV_05075 [Anaplasma marginale str. Virginia] gi|23168718|gb|AAN08687.1| transcriptional regulator [Anaplasma marginale str. South Idaho] gi|23168730|gb|AAN08693.1| transcriptional regulator [Anaplasma marginale] gi|23168742|gb|AAN08699.1| transcriptional regulator [Anaplasma marginale] gi|23168754|gb|AAN08705.1| transcriptional regulator [Anaplasma marginale] gi|23168766|gb|AAN08711.1| transcriptional regulator [Anaplasma marginale str. Washington Okanogan] gi|56388397|gb|AAV86984.1| hypothetical protein AM1138 [Anaplasma marginale str. St. Maries] Length = 187 Score = 77.2 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 52/164 (31%), Positives = 78/164 (47%), Gaps = 20/164 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +V K P+PVD VG+ I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 16 IVEGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLY 75 Query: 61 HISEVLESPISFFF----------------DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ VL I + + SS E + + L L Sbjct: 76 ELARVLGIEIKDLIAKLQNDLRPITDAGDATDAALREGEESSLEEFGQSYNDGKEVLMLV 135 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEK----KYRTIEEECMVEQ 144 R + +I K+R I LV+ + + ++ ++ +EE E Sbjct: 136 RAYRRIKSDKMRGAIHTLVKVMCAEQQQDDYEHSDADEELGYEH 179 >gi|58617626|ref|YP_196825.1| putative transcriptional regulator [Ehrlichia ruminantium str. Gardel] gi|58417238|emb|CAI28351.1| Hypothetical transcriptional regulator [Ehrlichia ruminantium str. Gardel] Length = 201 Score = 76.8 bits (187), Expect = 8e-13, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 69/144 (47%), Gaps = 17/144 (11%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL ++ Sbjct: 54 KSRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQLAS 113 Query: 65 VLESPISFFFDVSPTVCSDIS-----------------SEENNVMDFISTPDGLQLNRYF 107 VL + +IS I + + L + R + Sbjct: 114 VLNVEVRDIMLKLQEDLKNISCGNDIVSTPSLKDNEEKFVPEFHDSKIDSKEVLMMVRAY 173 Query: 108 IQIDDVKVRQKIIELVRSIVSSEK 131 I + KVR I LV+++ + K Sbjct: 174 TCIKNEKVRNIIYNLVKALSTDNK 197 >gi|163868998|ref|YP_001610228.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018675|emb|CAK02233.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 130 Score = 76.8 bits (187), Expect = 9e-13, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K N VD ++G RIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG+NRV A L I++ Sbjct: 10 TKNSNFVDTSIGARIRHRRISMGLSQKALGNTLGVSFQQIQKYEKGLNRVSAGCLLEIAQ 69 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L+ PISFF+ T ++ + L + F ++ K ++ I+ L+ Sbjct: 70 KLQVPISFFYADLLTTDIATKENLSHCNQDTYSEKEHALLKNFREL-QPKKQKAILCLL 127 >gi|163868974|ref|YP_001610203.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018650|emb|CAK02208.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 130 Score = 76.8 bits (187), Expect = 9e-13, Method: Composition-based stats. Identities = 52/119 (43%), Positives = 73/119 (61%), Gaps = 2/119 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +DI++GKRIR RR+ +G+SQ++LG LG++FQQVQKYEKG NRV A RLQ I+ Sbjct: 11 KNPNFIDISIGKRIRHRRISMGLSQKELGSHLGVSFQQVQKYEKGFNRVSAGRLQEIANR 70 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFIS-TPDGLQLNRYFIQIDDVKVRQKIIELV 123 LE PI FF+ T + E + D + + L R F ++ K ++ I L+ Sbjct: 71 LEVPIHFFYADIATKEDIPTKENLSHHDQETYSEKEHALVRNFRELH-PKKQKAIWWLI 128 >gi|240851107|ref|YP_002972509.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268230|gb|ACS51818.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 156 Score = 76.8 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 2/120 (1%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ +DI +GKRIR RR+ +G+SQ++LG L ++FQQ+QKYEK +NRV A L I++ Sbjct: 36 TKNPHFIDILIGKRIRHRRISIGLSQKELGSHLSVSFQQIQKYEKDLNRVSAKCLLEIAQ 95 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFIS-TPDGLQLNRYFIQIDDVKVRQKIIELV 123 L+ P++FF+ + E +D + + L + F ++ K ++ I+ L+ Sbjct: 96 KLDVPVNFFYADLAIKEDLSTKETLLHLDQCTYSEKEHTLLKNFRELK-AKKQKAILWLI 154 >gi|83313460|ref|YP_423724.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82948301|dbj|BAE53165.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 127 Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 11/122 (9%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +RLRR +LG+SQEKLGE +G+TFQQVQKYE+G NR+ SRL +S LE PIS+FFD P Sbjct: 1 MRLRRTLLGLSQEKLGELIGLTFQQVQKYERGANRISCSRLFDLSRSLEVPISYFFDDMP 60 Query: 79 TVCSDIS-----------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 +S D + L+L R + I D VR++I +L +++ Sbjct: 61 EETKGLSPVQMVREPPKEEPPAAEADPRLRRETLELVRNYYSIVDPDVRRRIYDLAKALS 120 Query: 128 SS 129 Sbjct: 121 DR 122 >gi|220926095|ref|YP_002501397.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950702|gb|ACL61094.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 121 Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 45/125 (36%), Positives = 67/125 (53%), Gaps = 6/125 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 KI VD VG RI R G+SQ LG +G+TFQQVQKYEKGVNRVGASRL+ + V Sbjct: 3 KITTDVDRAVGARITTLRKAKGLSQTALGAAIGVTFQQVQKYEKGVNRVGASRLRESARV 62 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L+ P++ F + D + ++ + L R + + + R+ ++ L+ + Sbjct: 63 LDVPVAALFGTEESQAGDG-----EIFGLLTMAGAVDLLRAYEAM-SPERRRALLTLLTA 116 Query: 126 IVSSE 130 + S Sbjct: 117 VEGSH 121 >gi|23013262|ref|ZP_00053178.1| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 118 Score = 76.0 bits (185), Expect = 1e-12, Method: Composition-based stats. Identities = 48/117 (41%), Positives = 68/117 (58%), Gaps = 13/117 (11%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSD---- 83 MSQEKLGE +G+TFQQVQKYE+G NR+GASRL +S VL+ P+SFFFD Sbjct: 1 MSQEKLGEAIGLTFQQVQKYERGANRIGASRLFDLSRVLDVPVSFFFDDMGEDAQSSSPA 60 Query: 84 ---------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 ++ + D ++ + L+L R + I D VR+K EL +++ S+K Sbjct: 61 AVIKGEAVTTAASPGDERDPMAKRETLELVRAYYSITDESVRRKAYELAKTLGGSDK 117 >gi|163868976|ref|YP_001610205.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018652|emb|CAK02210.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 135 Score = 76.0 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 43/125 (34%), Positives = 72/125 (57%), Gaps = 7/125 (5%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ +D+++GKRIR RRM + +SQ+ LG LG++FQQ+QKYEKG+NRV A L I++ Sbjct: 10 TKNPHFIDVSIGKRIRHRRMTMWLSQKTLGNFLGVSFQQIQKYEKGLNRVSAKCLLEIAQ 69 Query: 65 VLESPISFFFDVSPTVCSDISSE------ENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 L+ PISFF++ + ++ + + L + F ++ K ++ Sbjct: 70 KLQVPISFFYEDLLATDLATKEDLVSEGNPSHHDQYTYSEKEHALLKNFREL-QPKKQKA 128 Query: 119 IIELV 123 I+ L+ Sbjct: 129 ILWLL 133 >gi|209964814|ref|YP_002297729.1| DNA-binding protein, putative [Rhodospirillum centenum SW] gi|209958280|gb|ACI98916.1| DNA-binding protein, putative [Rhodospirillum centenum SW] Length = 232 Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 5/133 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +V RIRLRR +LGMSQ L LGITFQQVQKYE+G NRV +L ++E+L+ P+ Sbjct: 17 IESHVASRIRLRRGLLGMSQSDLARTLGITFQQVQKYERGSNRVSVGKLYRLAEILDVPL 76 Query: 71 SFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +FFFD ++ I + L L R + +V + L+R+I Sbjct: 77 TFFFDGLDLPDLKKPPQTTTGFAEQQSPILSRRELDLLRAWKN-SPPEVSDAVASLLRAI 135 Query: 127 VSSEKKYRTIEEE 139 + E Sbjct: 136 APYVDEDAADAER 148 >gi|88657852|ref|YP_507902.1| putative transcriptional regulator [Ehrlichia chaffeensis str. Arkansas] gi|88599309|gb|ABD44778.1| putative transcriptional regulator [Ehrlichia chaffeensis str. Arkansas] Length = 213 Score = 75.2 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 17/148 (11%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 K P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 66 STTKIRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQ 125 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEE-----------------NNVMDFISTPDGLQLN 104 ++ VL + +IS + I + + L + Sbjct: 126 LASVLNVEVRDIMLKLQEDLKNISCDHTVASTSTLKDNEEKFIPEFHDSKIDSKEVLMMV 185 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKK 132 R + I + KVR I LV+++ K+ Sbjct: 186 RAYTCIKNEKVRNIIYNLVKALSLDNKQ 213 >gi|86651824|gb|ABD14429.1| transcriptional regulator [Anaplasma centrale] Length = 187 Score = 74.9 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 16/149 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +VG K P+PVD VG+ I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 16 IVGGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLY 75 Query: 61 HISEVLESPISFFF-----DVSPTVCSDISSEENNVMDFIST-----------PDGLQLN 104 ++ VL I D+ + + + D S+ + L L Sbjct: 76 ELARVLGIEIKDLISKLQNDLRSITDTGDAPDAALREDDESSLEEFSHGYNDGKEVLMLV 135 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 R + +I K+R I LV+ + +++ Sbjct: 136 RAYRRIKSDKMRGAIHTLVKVMCMEQQRD 164 >gi|68171793|ref|ZP_00545135.1| Helix-turn-helix motif [Ehrlichia chaffeensis str. Sapulpa] gi|13511828|gb|AAC02808.2| hypothetical transcriptional regulator [Ehrlichia chaffeensis] gi|67998784|gb|EAM85494.1| Helix-turn-helix motif [Ehrlichia chaffeensis str. Sapulpa] Length = 213 Score = 74.9 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 17/148 (11%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 K P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 66 STTKIRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQ 125 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEE-----------------NNVMDFISTPDGLQLN 104 ++ VL + +IS + I + + L + Sbjct: 126 LASVLNVEVRDIMLKLQEDLKNISCDHTVASTSTLKDNEEKFIPEFHDSKIDSKEVLMMV 185 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKK 132 R + I + KVR I LV+++ K+ Sbjct: 186 RAYTCIKNEKVRNIIYNLVKALSLDNKQ 213 >gi|126729205|ref|ZP_01745019.1| DNA-binding protein, putative [Sagittula stellata E-37] gi|126710195|gb|EBA09247.1| DNA-binding protein, putative [Sagittula stellata E-37] Length = 102 Score = 74.9 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 37/101 (36%), Positives = 63/101 (62%), Gaps = 1/101 (0%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL I++ L+ P+SFFF+ +++++ Sbjct: 1 MTQQQLAEKVGIKFQQIQKYETGANRVSASRLWDIADALDVPVSFFFEGIENENAEVAAG 60 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 ++ D + + L L R + I + + R+++ EL R + Sbjct: 61 DHVPADILGDKEALDLVRSYYAIPENQ-RRRLFELARVLSD 100 >gi|163794400|ref|ZP_02188372.1| Predicted transcriptional regulator [alpha proteobacterium BAL199] gi|159180568|gb|EDP65089.1| Predicted transcriptional regulator [alpha proteobacterium BAL199] Length = 157 Score = 74.5 bits (181), Expect = 4e-12, Method: Composition-based stats. Identities = 56/132 (42%), Positives = 84/132 (63%), Gaps = 11/132 (8%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP+D++VG+R+RLRR +LGMSQE+LG+ L ITFQQVQKYE+G NR+ ASRL I ++L+ Sbjct: 21 NPIDVHVGRRVRLRRTLLGMSQEQLGDALNITFQQVQKYERGSNRISASRLWDIGQILDV 80 Query: 69 PISFFFDVSPTVC-----------SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 P+SFFFD E N D ++ + L+L R + I + +R+ Sbjct: 81 PVSFFFDDISDDTAAHSPRRMKAGGAKDEYEENPADPMARRETLELVRAYYSIKNPNLRK 140 Query: 118 KIIELVRSIVSS 129 +I E+V+S+ ++ Sbjct: 141 RITEMVKSVATA 152 >gi|254559380|ref|YP_003066475.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|254266658|emb|CAX22435.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 111 Score = 74.5 bits (181), Expect = 4e-12, Method: Composition-based stats. Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 3/114 (2%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R G+SQ LG +G++FQQ+QKYE G N VGA RL I+ VL P+S FF+ Sbjct: 1 MRKSRGLSQIALGIAIGVSFQQIQKYEIGANCVGAGRLSDIARVLGGPVSVFFE---EGD 57 Query: 82 SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + E+ V D + P + L FI I+D ++R++++ LVR+ E+ + Sbjct: 58 AAAAQEKTEVFDLLRAPGAVDLLNAFITIEDDRLRREVLALVRNAARMEQDHGA 111 >gi|90309028|gb|ABD93637.1| hypothetical transcriptional regulator [Ehrlichia muris] Length = 216 Score = 74.5 bits (181), Expect = 4e-12, Method: Composition-based stats. Identities = 48/145 (33%), Positives = 71/145 (48%), Gaps = 17/145 (11%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL ++ Sbjct: 72 KARPHPVDECVGKEIKRQRIMRGMSQNQLATKLGITFQQVQKYEKGTNRIVISRLYQLAT 131 Query: 65 VLESPISFFFDVSPTVCSDISSEE-----------------NNVMDFISTPDGLQLNRYF 107 VL + +I+ + + I + + L + R + Sbjct: 132 VLNVEVRDIMLKLQEDLKNIACDHTVACTSILRDNEEKFIPEFHDNKIDSKEVLMMVRAY 191 Query: 108 IQIDDVKVRQKIIELVRSIVSSEKK 132 I + KVR I LV+++ K+ Sbjct: 192 TCIKNEKVRNIIYNLVKALSLDNKQ 216 >gi|269958434|ref|YP_003328221.1| putative transcriptional regulator [Anaplasma centrale str. Israel] gi|269848263|gb|ACZ48907.1| putative transcriptional regulator [Anaplasma centrale str. Israel] Length = 187 Score = 74.5 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 16/149 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +VG K P+PVD VG+ I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 16 IVGGKARPHPVDEYVGREIKKQRIMKGMSQNQLASRLGITFQQVQKYEKGTNRIVISRLY 75 Query: 61 HISEVLESPISFFF-----DVSPTVCSDISSEENNVMDFIST-----------PDGLQLN 104 ++ VL I D+ + + + D S+ + L L Sbjct: 76 ELARVLGIEIKDLISKLQNDLRSITDTGDAPDAALREDDESSLEEFSHGYNDGKEVLMLV 135 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 R + +I K+R I LV+ + +++ Sbjct: 136 RAYRRIKSDKMRGAIHTLVKVMCMEQQRD 164 >gi|254462264|ref|ZP_05075680.1| transcriptional regulator, XRE family [Rhodobacterales bacterium HTCC2083] gi|206678853|gb|EDZ43340.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium HTCC2083] Length = 133 Score = 74.5 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 7/129 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G RI+ RR+ L +SQ KL E +G+ FQQVQKYE G NRV ASRL ++E L PI Sbjct: 4 IDVLIGARIKGRRIALKISQTKLAEAVGVRFQQVQKYESGANRVSASRLLMVAETLGVPI 63 Query: 71 SFFFDVSPTVCSDISSE------ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 S+FF S S++ M+ +S ++ + + + ++ +R Sbjct: 64 SYFFQGLDNAGSADSTDVQPSARATAPMNALSDARVSEILALVETLPKEQ-QMAVLAFLR 122 Query: 125 SIVSSEKKY 133 ++ + + Sbjct: 123 TLAKTTESE 131 >gi|222475530|ref|YP_002563947.1| transcriptional regulator [Anaplasma marginale str. Florida] gi|222419668|gb|ACM49691.1| transcriptional regulator [Anaplasma marginale str. Florida] Length = 187 Score = 74.1 bits (180), Expect = 5e-12, Method: Composition-based stats. Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 20/164 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +V K P+PVD VG+ I+ +R++ GMS+ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 16 IVEGKARPHPVDEYVGREIKKQRIMKGMSRNQLASRLGITFQQVQKYEKGTNRIVISRLY 75 Query: 61 HISEVLESPISFFF----------------DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ VL I + + SS E + + L L Sbjct: 76 ELARVLGIEIKDLIAKLQNDLRPITDAGDATDAALREGEESSLEEFGQSYNDGKEVLMLV 135 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEK----KYRTIEEECMVEQ 144 R + +I K+R I LV+ + + ++ ++ +EE E Sbjct: 136 RAYRRIKSDKMRGAIHTLVKVMCAEQQQDDYEHSDADEELGYEH 179 >gi|240851124|ref|YP_002972526.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268247|gb|ACS51835.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 123 Score = 74.1 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 45/120 (37%), Positives = 71/120 (59%), Gaps = 2/120 (1%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ +DI +GKRIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG NRV L I++ Sbjct: 3 TKNPHFIDILIGKRIRHRRISIGLSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIAQ 62 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFIS-TPDGLQLNRYFIQIDDVKVRQKIIELV 123 LE P++FF+ T + E + D + + L + F ++ K ++ I+ L+ Sbjct: 63 KLEVPMNFFYADIVTKEDISTKETLSHHDQETYSEKEQALLKNFRELKS-KKQKAILWLI 121 >gi|240851130|ref|YP_002972532.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268253|gb|ACS51841.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 117 Score = 74.1 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 6/119 (5%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K PN +DI +GKRIR RR+ +G+SQ+ LG LG++FQQ+QKYEKG NRV A L I++ Sbjct: 3 TKNPNFIDILIGKRIRHRRISIGLSQKALGSHLGVSFQQIQKYEKGFNRVSAGCLLEIAQ 62 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L+ PISFF+ T + ++ + L + F ++ K ++ I+ L+ Sbjct: 63 KLDVPISFFYADITTKENASHYDQETY-----SEKEHALLKNFRELK-AKKQKAILWLI 115 >gi|46201107|ref|ZP_00055727.2| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 127 Score = 74.1 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 47/122 (38%), Positives = 67/122 (54%), Gaps = 11/122 (9%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +RLRR +LG+SQEKLGE +G+TFQQVQKYE+G NR+ SRL +S LE IS+FF+ Sbjct: 1 MRLRRTLLGLSQEKLGEMIGLTFQQVQKYERGANRISCSRLFDLSRSLEVTISYFFEDMA 60 Query: 79 TVCSDIS-----------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 +S D + L+L R + I D VR++I +L +++ Sbjct: 61 EETKGLSPVQMVREPPKEEPAAAEADPRLRRETLELVRNYYSITDPDVRRRIYDLAKALS 120 Query: 128 SS 129 Sbjct: 121 DR 122 >gi|49476099|ref|YP_034140.1| DNA-binding protein [Bartonella henselae str. Houston-1] gi|49238907|emb|CAF28202.1| DNA-binding protein [Bartonella henselae str. Houston-1] Length = 152 Score = 73.7 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 52/119 (43%), Positives = 73/119 (61%), Gaps = 5/119 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ DI+VGKRIR RR +LG+SQ++LG LG+TFQQ+QKYEKG+NRVGA RLQ I+ Sbjct: 37 NKNPHFNDISVGKRIRYRRKMLGLSQKQLGHSLGVTFQQIQKYEKGINRVGAGRLQEIAT 96 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +L+ ISFF+ S IS + L + F ++ K ++ I+ L+ Sbjct: 97 LLDVSISFFY----ADISTKEHVSYPRNKGISNKEEDFLLKSFRELK-PKKQKAILCLL 150 >gi|218659215|ref|ZP_03515145.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli IE4771] Length = 122 Score = 73.7 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 8/130 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ IR R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNIRQLRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + IS F+ + E +PD L + +++ ++ + ++ I Sbjct: 61 DVEISVLFEGADMPQFGSRIEL--------SPDAYALALSYDKLNSPAGKEAVKTILTLI 112 Query: 127 VSSEKKYRTI 136 + + Sbjct: 113 SGGQAAEKAA 122 >gi|295690271|ref|YP_003593964.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432174|gb|ADG11346.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 127 Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 77/124 (62%), Gaps = 1/124 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N +D+++GKR+R RR +LG++Q++L E +G+ FQQ+QKYE G NR+ A+RL ++E L Sbjct: 1 MGNDIDVHLGKRLRRRRRLLGLTQQQLAEVVGVRFQQIQKYECGANRISAARLWQLAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E P+ +F+D V + + E + + + L R + + + R+++++L +S+ Sbjct: 61 EVPVGYFYDGLSEVRREAAGEIAESGEMFARKETQDLVRAYYLLG-ERPRRRLLDLAKSL 119 Query: 127 VSSE 130 E Sbjct: 120 HGGE 123 >gi|190889812|ref|YP_001976354.1| transcriptional regulator protein, Cro/CI family [Rhizobium etli CIAT 652] gi|218512245|ref|ZP_03509085.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli 8C-3] gi|190695091|gb|ACE89176.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CIAT 652] Length = 122 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 42/113 (37%), Positives = 62/113 (54%), Gaps = 8/113 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG IR R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGHNIRQLRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + IS F+ + E +PD L + +++ ++ + Sbjct: 61 DVEISVLFEGADMPQFGSRIEL--------SPDAYALALSYDKLNSPAGKEAV 105 >gi|15604357|ref|NP_220873.1| hypothetical protein RP497 [Rickettsia prowazekii str. Madrid E] gi|51473681|ref|YP_067438.1| hypothetical protein RT0484 [Rickettsia typhi str. Wilmington] gi|7388420|sp|Q9ZD50|Y497_RICPR RecName: Full=Uncharacterized HTH-type transcriptional regulator RP497 gi|3861049|emb|CAA14949.1| unknown [Rickettsia prowazekii] gi|51459993|gb|AAU03956.1| conserved hypothetical protein [Rickettsia typhi str. Wilmington] gi|292572112|gb|ADE30027.1| Putative transcriptional regulator [Rickettsia prowazekii Rp22] Length = 130 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 6/131 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I +D +G++I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL Sbjct: 1 MGRKNDIIQKIDSFIGQKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+E L+ I +FF+ + ++++R F++I+ + +Q I Sbjct: 61 LIAEALDRNIDYFFEGLEEANKPQPVHTQHQ------RMCIEVSRNFMKINSTEEQQAIN 114 Query: 121 ELVRSIVSSEK 131 LV+ + EK Sbjct: 115 NLVKCLAGKEK 125 >gi|13475238|ref|NP_106802.1| hypothetical protein mlr6265 [Mesorhizobium loti MAFF303099] gi|14025989|dbj|BAB52588.1| mlr6265 [Mesorhizobium loti MAFF303099] Length = 215 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 67/120 (55%), Gaps = 4/120 (3%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +K P+P D +VG++I R+ +SQ +L +G++FQQ+QKYE NRV AS L I Sbjct: 23 NSKSRPHPADQHVGRQIATVRLQSDVSQAQLARAIGVSFQQLQKYENARNRVSASMLYEI 82 Query: 63 SEVLESPISFFFD---VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + L+ P+S FF+ + + ++FI++ +G +L +++ +VR ++ Sbjct: 83 ARSLDVPVSRFFEGLLGNEISGETSPLPIDERIEFIASAEGRRLIEGLMRLH-PRVRSRV 141 >gi|13512585|gb|AAK28679.1| hypothetical transcriptional regulator [Ehrlichia canis] Length = 204 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 69/148 (46%), Gaps = 17/148 (11%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 K P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 57 SATKVRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQ 116 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE-----------------ENNVMDFISTPDGLQLN 104 ++ VL + +IS + I + + L + Sbjct: 117 LASVLNVEVRDIMLKLQEDLKNISCDNPITPPHALRDNEEKFLPEFNDSKIDSKEVLMMV 176 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKK 132 R + I + KVR I LV+++ K Sbjct: 177 RAYTCIKNEKVRNIIYNLVKALSLDNKS 204 >gi|116249916|ref|YP_765754.1| HTH-type transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254564|emb|CAK05638.1| putative HTH-type transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 121 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 8/117 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ +R R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGANRVSASKLHQIAVFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + IS F+ + E +PD L + +++ ++ + +V Sbjct: 61 DVDISALFEGAGMSPFGSRVEL--------SPDAYALALSYDKLNSPAGKEAVKTIV 109 >gi|163868821|ref|YP_001610047.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018494|emb|CAK02052.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 129 Score = 73.3 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 50/119 (42%), Positives = 77/119 (64%), Gaps = 5/119 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ DI++GK+IR +R I+G+SQ++LG LG+TFQQ+QKYEKG+NRV A LQ I++ Sbjct: 6 TKNPHFYDISLGKKIRFKRKIMGISQKQLGNHLGVTFQQIQKYEKGLNRVSARCLQEIAD 65 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L+ PISFF+ S + + D IS+ + L + F +I K ++ I++L+ Sbjct: 66 RLDVPISFFYADSAQKENSLC----YYDDQISSKEEYLLLKNF-RILTRKKQKAILQLI 119 >gi|67459118|ref|YP_246742.1| transcriptional regulator [Rickettsia felis URRWXCal2] gi|67004651|gb|AAY61577.1| Predicted transcriptional regulator [Rickettsia felis URRWXCal2] Length = 130 Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 6/131 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I +D +GK+I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL Sbjct: 1 MGRKNDIIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+E L+ I +FF+ + ++++R F++I+ + +Q + Sbjct: 61 LIAEALDRNIDYFFEGLEEANKPQPVHTQHQ------RMCIEVSRNFMKINSTEEQQAVN 114 Query: 121 ELVRSIVSSEK 131 LV+ + EK Sbjct: 115 NLVKCLAGKEK 125 >gi|240851105|ref|YP_002972507.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268228|gb|ACS51816.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 123 Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 71/120 (59%), Gaps = 2/120 (1%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ +DI +GKRIR RR+ +G+SQ++LG L ++FQQ+QKYEK +NRV A L I++ Sbjct: 3 TKNPHFIDILIGKRIRHRRIAMGVSQKELGCHLSVSFQQIQKYEKDLNRVSAKCLLEIAQ 62 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFIS-TPDGLQLNRYFIQIDDVKVRQKIIELV 123 L+ P++FF+ + E +D + + L + F ++ K ++ I+ L+ Sbjct: 63 KLDVPVNFFYADLAIKEDLSTKETLLHLDQCTYSEKEHTLLKNFRELKS-KKQKAILWLI 121 >gi|83312661|ref|YP_422925.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82947502|dbj|BAE52366.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 121 Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 44/111 (39%), Positives = 64/111 (57%), Gaps = 9/111 (8%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDIS 85 +G+SQE LGE LG+TFQQ+QKYE+G NR+GASRL +S LE P+ +F+D S Sbjct: 1 MGLSQEALGEALGLTFQQIQKYERGANRIGASRLFDLSRALEVPVEYFYDEMSPDVMAAS 60 Query: 86 ---------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 +D +S + L L R + +I D VR+++ EL R++ Sbjct: 61 PRHMVRATQEPVPQQIDPMSKRETLDLVRTYYKIGDPNVRKRVYELARALA 111 >gi|197106408|ref|YP_002131785.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479828|gb|ACG79356.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 124 Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 73/118 (61%), Gaps = 1/118 (0%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D+++G+++R RR +LG++Q++L G+ FQQ+QKYE NR+ A+RL ++E+L++ Sbjct: 2 DEIDLHLGRKLRRRRKMLGLTQQELAGACGVRFQQIQKYECAANRMSAARLWKLAEILDA 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+S+F++ D + + +L + + + D + R++++EL +++ Sbjct: 62 PVSYFYEGLSEAQRQAHEAFREPDDVFTRKETRELIQAYYAL-DERPRRQLLELAKAM 118 >gi|329891157|ref|ZP_08269500.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328846458|gb|EGF96022.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 123 Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 68/118 (57%), Gaps = 4/118 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ +R+ LG +Q LG+ LG+TFQQVQKYEKG NR+ AS+L I+ I +FF+ Sbjct: 2 GRRVCEKRIALGYNQTDLGQALGVTFQQVQKYEKGANRISASKLWDIARFFRVDIGYFFE 61 Query: 76 VSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 +E E V DF +T +++ R ++ + ++ +++L+R +V + Sbjct: 62 GLTGAAQPGMAEGEAEPFVHDFPATRQTIEIGRLAPRLSSRQ-QKLVVDLMRELVEDD 118 >gi|163740854|ref|ZP_02148247.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161385845|gb|EDQ10221.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] Length = 102 Score = 72.9 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 1/102 (0%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L P+SFFF+ + S + Sbjct: 1 MTQQQLAELVGIKFQQIQKYETGANRVSASRLWDISDALSVPVSFFFEGLQDDDAPASDK 60 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 D + + L L R + I + + R+++ EL R + + Sbjct: 61 AQVPDDLMGDKEALDLVRSYYAIPENQ-RRRLFELARVLSDA 101 >gi|218458185|ref|ZP_03498276.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli Kim 5] Length = 110 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 8/113 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ IR R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNIRQLRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + IS F+ + E +PD L + +++ ++ + Sbjct: 61 DVEISVLFEGADMPQFGSRIEL--------SPDAYALALSYDKLNSPAGKEAV 105 >gi|16126490|ref|NP_421054.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235270|ref|YP_002517707.1| transcriptional regulator of stalk biogenesis staR [Caulobacter crescentus NA1000] gi|13423760|gb|AAK24222.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|78057842|gb|ABB17333.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|220964443|gb|ACL95799.1| transcriptional regulator of stalk biogenesis staR [Caulobacter crescentus NA1000] Length = 131 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 76/120 (63%), Gaps = 1/120 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N +D+++GKR+R RR +LG++Q++L +G+ FQQ+QKYE G NR+ A+RL +SE L Sbjct: 4 MGNDIDVHLGKRLRRRRRLLGLTQQQLAGTVGVRFQQIQKYECGANRISAARLWQLSEAL 63 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E P+ +F+D + +SE + + + L L R + + + R+++++L +S+ Sbjct: 64 EVPVGYFYDGLSDTRRETTSESAEGGEMFARKETLDLIRAYYLLG-ERPRRRLLDLAKSL 122 >gi|73667507|ref|YP_303523.1| transcriptional regulator [Ehrlichia canis str. Jake] gi|72394648|gb|AAZ68925.1| transcriptional regulator [Ehrlichia canis str. Jake] Length = 215 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 69/148 (46%), Gaps = 17/148 (11%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 K P+PVD VGK I+ +R++ GMSQ +L LGITFQQVQKYEKG NR+ SRL Sbjct: 68 SATKVRPHPVDECVGKEIKRQRIMRGMSQNQLANKLGITFQQVQKYEKGTNRIVISRLYQ 127 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE-----------------ENNVMDFISTPDGLQLN 104 ++ VL + +IS + I + + L + Sbjct: 128 LASVLNVEVRDIMLKLQEDLKNISCDNPITPPHALRDNEEKFLPEFNDSKIDSKEVLMMV 187 Query: 105 RYFIQIDDVKVRQKIIELVRSIVSSEKK 132 R + I + KVR I LV+++ K Sbjct: 188 RAYTCIKNEKVRNIIYNLVKALSLDNKS 215 >gi|157803756|ref|YP_001492305.1| transcriptional regulator [Rickettsia canadensis str. McKiel] gi|157785019|gb|ABV73520.1| Predicted transcriptional regulator [Rickettsia canadensis str. McKiel] Length = 130 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 6/136 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I +D +GK+I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL Sbjct: 1 MGRKNDIIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+E L+ I +FF+ + ++++R F++I+ + +Q I Sbjct: 61 LIAEALDRNIDYFFEGLEEANKPQPVHTQHQ------RMCIEVSRNFMKINSTEEQQAIN 114 Query: 121 ELVRSIVSSEKKYRTI 136 LV+ + EK Sbjct: 115 NLVKCLAGKEKLKAKS 130 >gi|86355802|ref|YP_467694.1| Cro/CI family transcriptional regulator [Rhizobium etli CFN 42] gi|86279904|gb|ABC88967.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli CFN 42] Length = 121 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 8/129 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ IR R I +SQ LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNIRQLRAIRRVSQLDLGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 IS F+ + E +PD L + +++ ++ + ++ + Sbjct: 61 GVEISALFEGTDISEFGGRIEL--------SPDAYALALSYDKLNSTAGKEAVKTILTLM 112 Query: 127 VSSEKKYRT 135 + Sbjct: 113 SGEAVESAA 121 >gi|157825788|ref|YP_001493508.1| hypothetical protein A1C_03595 [Rickettsia akari str. Hartford] gi|157799746|gb|ABV75000.1| hypothetical protein A1C_03595 [Rickettsia akari str. Hartford] Length = 130 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 70/136 (51%), Gaps = 6/136 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I +D +G++I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL Sbjct: 1 MGRKNDIIQKIDSFIGQKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+E L+ I +FF+ + + + ++++R F++I+ + +Q I Sbjct: 61 LIAEALDRNIDYFFEGLEE------ANKPQPVYTQHQRMCIEVSRNFMKINSTEEQQAIN 114 Query: 121 ELVRSIVSSEKKYRTI 136 LV+ + +K + Sbjct: 115 NLVKCLAGKDKLKASS 130 >gi|49476100|ref|YP_034141.1| DNA binding protein [Bartonella henselae str. Houston-1] gi|49238908|emb|CAF28203.1| DNA binding protein [Bartonella henselae str. Houston-1] Length = 152 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 52/119 (43%), Positives = 73/119 (61%), Gaps = 5/119 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ DI+VGKRIR RR +LG+SQ++LG LG+TFQQ+QKYEKG+NRVGA RLQ I+ Sbjct: 37 NKNPHFNDISVGKRIRYRRKMLGLSQKQLGHSLGVTFQQIQKYEKGINRVGAGRLQEIAT 96 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +L+ ISFF+ S IS + L + F ++ K ++ I+ L+ Sbjct: 97 LLDVSISFFY----ADISKKEHVSYPRDKGISNKEEDFLLKSFRELK-PKKQKAILCLL 150 >gi|88657049|gb|ABD47298.1| RegA [Rhizobium leguminosarum bv. trifolii TA1] Length = 99 Score = 72.5 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 50/97 (51%), Positives = 66/97 (68%), Gaps = 2/97 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN +D+ VG R+R+RR LGM+Q L E LGITF+Q+QKYEKG NR+GASRLQ ISE+ Sbjct: 4 KSPNSIDVYVGNRVRVRRKTLGMTQNGLAELLGITFRQIQKYEKGTNRIGASRLQRISEI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 L P+ FFF+ + D + E N F+S+ D + Sbjct: 64 LRVPVGFFFENGGSGPIDGQTNELN--SFLSSKDERR 98 >gi|71083650|ref|YP_266370.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1062] gi|91763309|ref|ZP_01265273.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1002] gi|71062763|gb|AAZ21766.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1062] gi|91717722|gb|EAS84373.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1002] Length = 123 Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 65/111 (58%), Gaps = 4/111 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + ++G +++LRR+ LG++Q K+ + + +TFQQ+QKYEKG N V + RL ++ L Sbjct: 1 MEDNFNKHLGNKLKLRRLALGLTQTKVAKAINVTFQQIQKYEKGTNGVSSIRLLQLANYL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + P+++FF+ ++ + M+ + L + + ++++ + + Sbjct: 61 KVPVNYFFEDFSEYLINLERSQEGHMNV----NYNFLVKLYSELNNDQKLK 107 >gi|240851129|ref|YP_002972531.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268252|gb|ACS51840.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 121 Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 44/119 (36%), Positives = 70/119 (58%), Gaps = 2/119 (1%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K PN +DI +GKRIR RR+ + +SQ+ LG LG++FQQ+QKYEKG NRV L I++ Sbjct: 3 TKNPNFIDILIGKRIRQRRIAMELSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIAQ 62 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 LE P+SFF+ ++S+ ++ + L + F ++ K ++ I+ L+ Sbjct: 63 KLEVPMSFFYADL-ATKENLSTNASHCEQETYSEKEQALLKNFRELKT-KKQKAILWLI 119 >gi|83313343|ref|YP_423607.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82948184|dbj|BAE53048.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 476 Score = 72.2 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 56/140 (40%), Gaps = 7/140 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NKK + +G ++R R +SQ L L ++ + + E + L Sbjct: 1 MAMNKK------LFLGYKLRRLREGKKLSQAALAVLLEVSPSYLNQIENNQRPLTVPVLL 54 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I++VL+ ++ + + E N F S GL R ++ ++++ Sbjct: 55 RIAKVLDVDLATLVEDEESRLVADLREALNDPVFGSGSIGLSELRNAAS-ASPELAKRVL 113 Query: 121 ELVRSIVSSEKKYRTIEEEC 140 L ++ +++ +++ E Sbjct: 114 TLYQTFRQLDERMQSLTENL 133 >gi|240851111|ref|YP_002972513.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268234|gb|ACS51822.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 123 Score = 72.2 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 2/120 (1%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ +DI +GKRIR RR+ + +SQ+ LG LG++FQQ+QKYEKG NRV L I++ Sbjct: 3 TKNPHFIDILIGKRIRHRRISIELSQKALGSHLGVSFQQIQKYEKGFNRVSVGCLLKIAQ 62 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFIS-TPDGLQLNRYFIQIDDVKVRQKIIELV 123 LE P++FF+ T + E + D + + L + F + K ++ I+ L+ Sbjct: 63 KLEVPMNFFYADIVTKEDISTKETLSHHDQETYSEKEHALLKNFRDL-QPKKQKAILWLI 121 >gi|157964557|ref|YP_001499381.1| putative transcriptional regulator [Rickettsia massiliae MTU5] gi|157844333|gb|ABV84834.1| Putative transcriptional regulator [Rickettsia massiliae MTU5] Length = 131 Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 6/131 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I +D +GK+I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL Sbjct: 2 MGRKNDIIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLV 61 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+E L+ I +FF+ + ++++R F++I+ + +Q + Sbjct: 62 LIAEALDRNIDYFFEGLEEANKPRPVHTQHQ------RMCIEVSRNFMKINSTEEQQAVN 115 Query: 121 ELVRSIVSSEK 131 LV+ + EK Sbjct: 116 NLVKCLAGKEK 126 >gi|23014107|ref|ZP_00053943.1| COG3800: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 480 Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 57/140 (40%), Gaps = 7/140 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV NKK + +G ++R R +SQ L L ++ + + E + L Sbjct: 1 MVMNKK------LFLGYKLRRLREGKKLSQAALAALLEVSPSYLNQIENNQRPLTVPVLL 54 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I++VL+ ++ + + E N F S GL R ++ ++++ Sbjct: 55 RIAKVLDVDLATLVEDEESRLVADLREALNDPVFGSGSIGLSELRNAAS-ASPELAKRVL 113 Query: 121 ELVRSIVSSEKKYRTIEEEC 140 L ++ +++ +++ E Sbjct: 114 TLYQTFRQLDERMQSLTENL 133 >gi|241207094|ref|YP_002978190.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860984|gb|ACS58651.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 121 Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 8/129 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ +R R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGANRVSASKLHQIAVFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + IS F+ + E +PD L + +++ ++ + +V + Sbjct: 61 DVEISALFEGAGMSPFGSRVEL--------SPDAYALALSYDKLNSPAGKEAVKTIVTLM 112 Query: 127 VSSEKKYRT 135 + Sbjct: 113 TGEAAETAA 121 >gi|91205491|ref|YP_537846.1| putative transcriptional regulator [Rickettsia bellii RML369-C] gi|157827144|ref|YP_001496208.1| putative transcriptional regulator [Rickettsia bellii OSU 85-389] gi|91069035|gb|ABE04757.1| Putative transcriptional regulator [Rickettsia bellii RML369-C] gi|157802448|gb|ABV79171.1| Putative transcriptional regulator [Rickettsia bellii OSU 85-389] Length = 137 Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 6/131 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I +D +GK+I R+ G+S+++L E + +T QQ+QKYE+ +NR+ RL Sbjct: 1 MARKNDIIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYERAINRISVGRLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+E L+ I +FF+ + ++++R F++I +Q + Sbjct: 61 LIAEALDRNIDYFFEGLEEANKPQPVHTQHQ------RMCIEVSRNFMKIQSTDEQQAVN 114 Query: 121 ELVRSIVSSEK 131 LV+ + +K Sbjct: 115 NLVKCLAGKDK 125 >gi|240851141|ref|YP_002972543.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268264|gb|ACS51852.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 151 Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats. Identities = 50/118 (42%), Positives = 77/118 (65%), Gaps = 6/118 (5%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI++G++IR +R ++GMSQ+KLG LG+TFQQ+QKYEKG NR+GA RLQ I+++ Sbjct: 38 KNPHFNDISIGRKIRFKRTMIGMSQKKLGSQLGVTFQQIQKYEKGSNRIGAGRLQEIADI 97 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 LE PISFF+ T + + IS+ + L + F ++ K ++ I+ L+ Sbjct: 98 LEVPISFFYTDLSTK-----ENASTCDERISSKEEQVLLKSFRELK-PKKQKAILCLI 149 >gi|222149186|ref|YP_002550143.1| transcriptional regulator HTH family [Agrobacterium vitis S4] gi|221736171|gb|ACM37134.1| transcriptional regulator HTH family [Agrobacterium vitis S4] Length = 134 Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats. Identities = 45/121 (37%), Positives = 65/121 (53%), Gaps = 4/121 (3%) Query: 1 MVGNKKIPNPVDINV--GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M KK P+ D N+ G+R++ R GMSQ + LG+TFQQ+ KYEKG+N + ASR Sbjct: 1 MTLLKKTPDVHDYNILAGERLKSARKNKGMSQADVARKLGVTFQQLHKYEKGINGMSASR 60 Query: 59 LQHISEVLESPISFFF--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 L + +L FF+ D + D SSE +++ S D L+LN F I + R Sbjct: 61 LAAAATLLGMDPDFFYTADSAVAPSKDTSSELTDLVKATSRSDALELNTCFASIKNSNTR 120 Query: 117 Q 117 + Sbjct: 121 K 121 >gi|240851449|ref|YP_002972836.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268572|gb|ACS52159.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 118 Score = 71.4 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 47/119 (39%), Positives = 72/119 (60%), Gaps = 5/119 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ DI+VGK+IR RR +G+SQEKLG+ +G++FQQ+QKYE G NRVGA RLQ I+ Sbjct: 3 NKTPHLNDISVGKKIRCRRKYMGISQEKLGKKIGVSFQQIQKYENGSNRVGAGRLQEIAN 62 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +L+ ISFF+ + + + + + L + F ++ K ++ I+ LV Sbjct: 63 ILDVDISFFYTDISEKRNISYP----YNEGLHSKEEYSLLKGFRKLK-HKKQKAILWLV 116 >gi|209551664|ref|YP_002283581.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537420|gb|ACI57355.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 121 Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 8/129 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ +R R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + IS F+ + E +PD L + +++ ++ + +V + Sbjct: 61 DVEISALFEGAGMSQFGSRIEL--------SPDAYALALSYDRLNSSAGKEAVKTIVTIM 112 Query: 127 VSSEKKYRT 135 + Sbjct: 113 SGETAENAA 121 >gi|34580426|ref|ZP_00141906.1| hypothetical protein [Rickettsia sibirica 246] gi|28261811|gb|EAA25315.1| unknown [Rickettsia sibirica 246] Length = 125 Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 6/130 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I +D +GK+I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL Sbjct: 1 MGRKNDIIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+E L+ I +FF+ + +++ R F++I+ + +Q + Sbjct: 61 LIAEALDRNIDYFFEGLEEANKPQPVHTQHQ------RMCIEVARNFMKINSTEEQQAVN 114 Query: 121 ELVRSIVSSE 130 LV+ + + Sbjct: 115 NLVKCLAGKK 124 >gi|221638300|ref|YP_002524562.1| XRE family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221159081|gb|ACM00061.1| Transcriptional regulator, XRE family [Rhodobacter sphaeroides KD131] Length = 102 Score = 71.0 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 4/105 (3%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI 84 ++GM+Q++L +C+GI FQQ+QKYE G+NRV ASRL I+E L ISFFF+ Sbjct: 1 MVGMTQQQLADCVGIKFQQIQKYETGMNRVSASRLWDIAEALGVSISFFFEGLEGAGDQA 60 Query: 85 SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 E D I+ + L+L R + I + + R+++ +L R + + Sbjct: 61 RQAE---GDRITDKEALELVRSYYAIPEAQ-RRRLFDLARVLSEA 101 >gi|84686223|ref|ZP_01014118.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84665750|gb|EAQ12225.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 104 Score = 70.6 bits (171), Expect = 6e-11, Method: Composition-based stats. Identities = 40/105 (38%), Positives = 66/105 (62%), Gaps = 2/105 (1%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI 84 ++GM+Q++L E +GI FQQ+QKYE G+NRV ASRL IS+ L P+SFFF+ ++ Sbjct: 1 MVGMTQQQLAEKVGIKFQQIQKYETGMNRVSASRLWDISDALSVPVSFFFEGL-EGGAER 59 Query: 85 SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 +E D ++ + L+L R + I + + R+++ EL R + + Sbjct: 60 EAEHALPDDILADKEALELVRSYYAIPENQ-RRRLFELARVLSDA 103 >gi|240851140|ref|YP_002972542.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268263|gb|ACS51851.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 151 Score = 70.6 bits (171), Expect = 6e-11, Method: Composition-based stats. Identities = 48/117 (41%), Positives = 75/117 (64%), Gaps = 6/117 (5%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI++G++IR +R ++GMSQ++LG LG+TFQQ+QKYEKG NR+GA RLQ I+++ Sbjct: 38 KNPHFNDISIGRKIRFKRTMIGMSQKQLGSQLGVTFQQIQKYEKGSNRIGAGRLQEIADI 97 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 LE P SFF+ T + + IS+ + L + F ++ K ++ I+ L Sbjct: 98 LEVPSSFFYTDLSTK-----ENASTCDERISSKEEQILLKSFRELK-PKKQKAILRL 148 >gi|163745937|ref|ZP_02153296.1| transcriptional regulator, Cro/CI family, putative [Oceanibulbus indolifex HEL-45] gi|161380682|gb|EDQ05092.1| transcriptional regulator, Cro/CI family, putative [Oceanibulbus indolifex HEL-45] Length = 103 Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 2/102 (1%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV-SPTVCSDISS 86 M+Q+KL E +GI FQQ+QKYE G NRV ASRL I++ L P+SFFF+ + Sbjct: 1 MTQQKLAELVGIKFQQIQKYETGANRVSASRLWDIADALGVPVSFFFEGIKDDQAEGTAP 60 Query: 87 EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + D ++ + ++L R + I + + R+++ EL R + Sbjct: 61 LDGLPADLMADKEAMELVRSYYAIPENQ-RRRLFELARVLSD 101 >gi|197103372|ref|YP_002128750.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196480648|gb|ACG80175.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 145 Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 83/133 (62%), Gaps = 5/133 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PNPVD++VG+R+RLRR LG+SQ L + LG+TFQQ+QKYE+G NR+ AS+L I+++L Sbjct: 4 APNPVDVHVGRRVRLRRRELGVSQAWLADRLGLTFQQIQKYERGANRISASKLYAIAKLL 63 Query: 67 ESPISFFFDVSPTVCSDISSEENN-----VMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 E PI++FF+ + + V + ++ P+G QL F+ I +R+ + E Sbjct: 64 EVPITYFFEGLDDPATPTGRQYAQAFTGVVEELLAEPNGPQLAEAFLSIRRRSIRKGLAE 123 Query: 122 LVRSIVSSEKKYR 134 L +I ++++ Sbjct: 124 LAPAIAANDQAQA 136 >gi|254419929|ref|ZP_05033653.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196186106|gb|EDX81082.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 117 Score = 70.6 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 8/120 (6%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVDI +G RIR RR L ++Q +L G+TFQQ+QKYE+GVNRV A+RL I+ VL+S Sbjct: 6 DPVDIAIGARIRARREELRITQAQLAAGAGVTFQQIQKYERGVNRVSAARLLQIAAVLKS 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + T D + ++ P +L F I D + R ++ + + + Sbjct: 66 TGAALLGELETAEGDELA--------LAAPGVAELLSAFRSIRDAEKRDALLVVAKGLRD 117 >gi|229822080|ref|YP_002883606.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567993|gb|ACQ81844.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 488 Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 43/127 (33%), Gaps = 3/127 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR R ++ + L G Q+ E G V S LQ I+ L+ + Sbjct: 12 VGRRIRHFRTERRLTLDDLARLTGSAASQLSLVENGRREVRVSLLQQIARALDVSPADLL 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + P S L L R ++ + + ++ L + E + Sbjct: 72 EAEPPTRRAALEIALEEAQRGSLYATLGLPAVRASKRLPTEAL-EALVGLHSELARRESE 130 Query: 133 YRTIEEE 139 EE Sbjct: 131 ASATPEE 137 >gi|49475984|ref|YP_034025.1| DNA-binding protein [Bartonella henselae str. Houston-1] gi|49238792|emb|CAF28061.1| DNA-binding protein [Bartonella henselae str. Houston-1] Length = 118 Score = 70.2 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 51/119 (42%), Positives = 74/119 (62%), Gaps = 5/119 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ DI+VGK+IR RR I+G+SQ++LG LGITFQQ+QKYEKG+NRV A RLQ I++ Sbjct: 3 TKNPHFNDISVGKKIRFRRSIMGLSQKQLGSHLGITFQQIQKYEKGINRVSAGRLQEIAD 62 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L+ P+SFF+ + + D IS L + F + + K ++ I+ L+ Sbjct: 63 RLDVPVSFFYADISKKEDTLYPD----NDRISNKAEHLLLKNFRGL-NPKKQRAILRLI 116 >gi|15892591|ref|NP_360305.1| hypothetical protein RC0668 [Rickettsia conorii str. Malish 7] gi|157828542|ref|YP_001494784.1| hypothetical protein A1G_03795 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933258|ref|YP_001650047.1| transcriptional regulator [Rickettsia rickettsii str. Iowa] gi|229586759|ref|YP_002845260.1| Putative transcriptional regulator [Rickettsia africae ESF-5] gi|238650247|ref|YP_002916098.1| transcriptional regulator [Rickettsia peacockii str. Rustic] gi|38503361|sp|Q92HV3|Y668_RICCN RecName: Full=Uncharacterized HTH-type transcriptional regulator RC0668 gi|15619757|gb|AAL03206.1| unknown [Rickettsia conorii str. Malish 7] gi|157801023|gb|ABV76276.1| hypothetical protein A1G_03795 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908345|gb|ABY72641.1| transcriptional regulator [Rickettsia rickettsii str. Iowa] gi|228021809|gb|ACP53517.1| Putative transcriptional regulator [Rickettsia africae ESF-5] gi|238624345|gb|ACR47051.1| transcriptional regulator [Rickettsia peacockii str. Rustic] Length = 125 Score = 70.2 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 6/130 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I +D +GK+I R+ G+S+++L E + +T QQ+QKYEK +NR+ RL Sbjct: 1 MGRKNDIIQKIDSFIGKKIYSLRLAKGLSRQQLAEVIDVTHQQLQKYEKAINRISVGRLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+E L+ I +FF+ + ++++R F++I+ + +Q + Sbjct: 61 LIAEALDRNIDYFFEGLEEANKPQPVHTQHQ------RMCIEVSRNFMKINSTEEQQAVN 114 Query: 121 ELVRSIVSSE 130 LV+ + + Sbjct: 115 NLVKCLAGKK 124 >gi|254456421|ref|ZP_05069850.1| transcription regulator [Candidatus Pelagibacter sp. HTCC7211] gi|207083423|gb|EDZ60849.1| transcription regulator [Candidatus Pelagibacter sp. HTCC7211] Length = 123 Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 64/111 (57%), Gaps = 4/111 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + ++G +++LRR+ LG++Q K+ + + +TFQQ+QKYEKG N V + RL +S L Sbjct: 1 MEDNFNKHLGNKLKLRRLALGLTQTKVAKAINVTFQQIQKYEKGTNGVSSIRLLQLSNYL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + PI++FF+ ++ + M+ + L + + +++ + + Sbjct: 61 KVPINYFFEDFSEYLINLEKSQEGHMNV----NYNFLTKLYSELNTDQKLK 107 >gi|254477432|ref|ZP_05090818.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214031675|gb|EEB72510.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 101 Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 2/101 (1%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL IS+ L P+SFFF+ Sbjct: 1 MTQQQLAELVGIKFQQIQKYETGANRVSASRLWDISDALGVPVSFFFEGLQEDDGAAEKS 60 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + D + + L L R + I + + R+++ EL R + Sbjct: 61 Q-VPDDLMGDKEALDLVRSYYAIPENQ-RRRLFELARVLSD 99 >gi|167041371|gb|ABZ06124.1| putative helix-turn-helix motif protein [uncultured marine microorganism HF4000_005K23] Length = 121 Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 69/125 (55%), Gaps = 6/125 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + ++G ++R RR+ LG++Q K+ + + +TFQQ+QKYEKG N + + R+ ++ L Sbjct: 1 MESNFNRHLGTKLRTRRLALGLTQTKVAQAINVTFQQIQKYEKGTNGISSLRIMQLANFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + P+ +F++ + + + E + + L + F + + + KI +++R+ Sbjct: 61 KVPVVYFYEDFSSYEGETFANEK-----VENLNYSFLAKLFSNLSVEQ-KDKIFQILRNT 114 Query: 127 VSSEK 131 EK Sbjct: 115 GVLEK 119 >gi|46201614|ref|ZP_00054686.2| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 98 Score = 69.5 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 8/106 (7%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI 84 +LG+SQ+++ + +G+T+QQ KYE+G+NR+ A RL I++VL P+ FF++ Sbjct: 1 MLGLSQQQMADLIGVTYQQAHKYERGINRISAGRLFEIAQVLGVPVGFFYEGLENRRGSD 60 Query: 85 SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S L+L R F I + + ++ + +L R + + E Sbjct: 61 LSAR--------QRMCLELARNFTSITNERHQEALSQLARVLAAEE 98 >gi|152967479|ref|YP_001363263.1| helix-turn-helix domain protein [Kineococcus radiotolerans SRS30216] gi|151361996|gb|ABS04999.1| helix-turn-helix domain protein [Kineococcus radiotolerans SRS30216] Length = 513 Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 49/128 (38%), Gaps = 4/128 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR R + G + +LGE +G Q+ + E G S + ++ LE + Sbjct: 33 VGRRIRYHRGVRGWTLAQLGEAVGTAQSQLSQVENGKREPRLSLVAAVARALEVTPADLL 92 Query: 75 DVSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 D +P + E + ++ GL R + + + ++ L R + Sbjct: 93 DPAPPPSRRAALEIELDRAQRSPLARALGLTEVRAGRALPTDAL-EALVRLHRELARRHD 151 Query: 132 KYRTIEEE 139 EE Sbjct: 152 AANATPEE 159 >gi|148272654|ref|YP_001222215.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830584|emb|CAN01520.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 475 Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 46/126 (36%), Gaps = 1/126 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R G++ + LGE GI Q+ E G S L I+ L ++ Sbjct: 6 IGRRIRHARKGAGLTLQALGERAGILPSQLSMIENGRRETRLSTLGRIAGALGVDVTHLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL-NRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 E + S GL L + + + ++ L R + E++ Sbjct: 66 AADAPDARSALEIELDRAQRSSLYGGLGLPAVPASRALPQETLEALVGLHRELARRERES 125 Query: 134 RTIEEE 139 EE Sbjct: 126 IATPEE 131 >gi|269955724|ref|YP_003325513.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269304405|gb|ACZ29955.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 505 Score = 69.5 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 3/127 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R GM+ + L +G QV E G +RLQ ++ L + + Sbjct: 29 IGRRIRHLRTERGMTLDDLAAAIGKAPSQVSLLENGKREPTIARLQAVARALGAGVEDLL 88 Query: 75 DVSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D P D E + G++ R + + + I+ L + + Sbjct: 89 DPRPPSRRDALELELERTQRGPLFDALGIRPVRVGRSLPTDAL-EAILALREELERLHSE 147 Query: 133 YRTIEEE 139 EE Sbjct: 148 RALTPEE 154 >gi|163869009|ref|YP_001610239.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018686|emb|CAK02244.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 146 Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 46/119 (38%), Positives = 75/119 (63%), Gaps = 5/119 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ DI++G++IR RR +L +SQ++LG+ LG+TFQQ+QKYEKG+NRVGA RLQ I++ Sbjct: 10 TKNPHSNDISIGRKIRFRRKMLKISQKELGDRLGVTFQQIQKYEKGLNRVGAGRLQEIAD 69 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +L+ I FF+ T + + S+ + L + F ++ K ++ I+ L+ Sbjct: 70 ILDISIFFFYADISTKEHVLLP----YEEMTSSQEEHTLLKSFRELK-PKQQKAILCLI 123 >gi|297543547|ref|YP_003675849.1| XRE family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841322|gb|ADH59838.1| transcriptional regulator, XRE family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 129 Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 8/129 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R G++Q++L LG++ + V YE G LQ I++ + + Sbjct: 1 MLGERIKELRKKKGVTQKELALYLGVSDRAVGYYESGQRTPPPDILQKIADFFNVSVDYL 60 Query: 74 F--------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 T E + + + L+L + K ++II ++++ Sbjct: 61 LGRTGVYNPTDEITEAISDDPELFEFWNTLKEREDLKLLFKQTKKLSPKDIKQIIRIIKA 120 Query: 126 IVSSEKKYR 134 I E K Sbjct: 121 IEDEEDKEE 129 >gi|304320427|ref|YP_003854070.1| hypothetical protein PB2503_04267 [Parvularcula bermudensis HTCC2503] gi|303299329|gb|ADM08928.1| hypothetical protein PB2503_04267 [Parvularcula bermudensis HTCC2503] Length = 122 Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 51/117 (43%), Positives = 80/117 (68%), Gaps = 9/117 (7%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSD 83 M+ G+SQEKLGE LG+TFQQVQKYEKGVNR+GA RL I+++L+ P+ FF+D + D Sbjct: 1 MMQGISQEKLGEDLGLTFQQVQKYEKGVNRIGAGRLFEIAQILDVPVQFFYDDFQSDEDD 60 Query: 84 I---------SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 +E ++ ++T DG+QL + F++I+DV +R++I++LV++I + Sbjct: 61 STLSEETTGYEAERTDLFASLATSDGMQLAQAFLRINDVTIRRRIVDLVKAIAEPDS 117 >gi|222825162|dbj|BAH22319.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 115 Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 65/118 (55%), Gaps = 11/118 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ G++Q +LG+ +G++++Q+Q+YE G N + ASRL +++ L ++ Sbjct: 7 VQLGKKIKQLRLDRGLTQTELGKRIGVSYRQIQRYENGSNYILASRLYDLAKALSIDVAD 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FF T + EE L+L + + +I ++R + LV+S S+ Sbjct: 67 FFTGMHTDSHEAYDEE-----------ILKLVKGYNEIKSKRLRSVVYILVKSFSQSD 113 >gi|240851142|ref|YP_002972544.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268265|gb|ACS51853.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 130 Score = 68.7 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 48/118 (40%), Positives = 78/118 (66%), Gaps = 5/118 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI++G++IR +R ++GMSQ++LG LG+TFQQ+QKYEKG NR+GA RLQ I+++ Sbjct: 16 KNPHFNDISIGRKIRFKRTMIGMSQKQLGSQLGVTFQQIQKYEKGSNRIGAGRLQEIADI 75 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 LE P SFF+ T + + + + IS+ + L + F ++ K ++ I+ L+ Sbjct: 76 LEVPSSFFYADLSTKENAL----DPCDERISSKEEHILLKSFRELK-PKKQKAILCLI 128 >gi|118785|sp|P15017|DNU4_RHORU RecName: Full=Uncharacterized transcriptional regulator in ATPase CF(0) region; AltName: Full=URF4 gi|46375|emb|CAA31250.1| ORF 4 (AA 1 - 108); homolog. to DNA-binding proteins [Rhodospirillum rubrum] gi|152603|gb|AAA26459.1| pot. DNA-binding protein (URF4); putative [Rhodospirillum rubrum] Length = 108 Score = 68.3 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 33/80 (41%), Positives = 49/80 (61%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + + + VD +VG+R+R RR L + QE L +G++FQQ+QKYE+G NR+ ASRL I Sbjct: 4 SDTRTIHHVDAHVGQRVRQRRTALILDQETLARRIGVSFQQIQKYERGRNRISASRLYDI 63 Query: 63 SEVLESPISFFFDVSPTVCS 82 ++ L PI +FF Sbjct: 64 AKALAVPIDYFFSDLERGDP 83 >gi|86360041|ref|YP_471931.1| Cro/CI family transcriptional regulator [Rhizobium etli CFN 42] gi|86284143|gb|ABC93204.1| probable transcriptional regulator protein, Cro/CI family [Rhizobium etli CFN 42] Length = 114 Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 44/98 (44%), Positives = 65/98 (66%), Gaps = 5/98 (5%) Query: 39 ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI-----SSEENNVMD 93 +TFQQVQKYEKG+NR+GASRLQ I+EVL + SFFF+ + + + + V + Sbjct: 1 MTFQQVQKYEKGINRIGASRLQRIAEVLHTSPSFFFEQNESQPLSLQGLALPDGADPVAE 60 Query: 94 FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 F+ T +GL LNR F++I D +R+ II LV+++ +E Sbjct: 61 FLRTKEGLVLNRAFLKIADPDIRETIIALVKAMAQAES 98 >gi|222087278|ref|YP_002545813.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724726|gb|ACM27882.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 200 Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 64/125 (51%), Gaps = 5/125 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + + + +D +VG+++R+ RM +SQ +LG+ +G+ QQ++++E NR+ + L ++ Sbjct: 29 DTQSTHLIDRHVGQQLRIIRMHSNLSQTELGQLVGLRHQQIEQFESSKNRMNTAVLCEVA 88 Query: 64 EVLESPISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 L PI+ F+ P E + + T + + + +++ ++R + Sbjct: 89 NCLNVPIARVFEALPLTELASSDGSLPEIGECIADLPTSESCRYVKEILRLP-PQLRTRA 147 Query: 120 IELVR 124 + L++ Sbjct: 148 LALIK 152 >gi|222101983|ref|YP_002546573.1| hypothetical protein Arad_12024 [Agrobacterium radiobacter K84] gi|221728100|gb|ACM31109.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 150 Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 42/101 (41%), Positives = 61/101 (60%), Gaps = 4/101 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PVD VG++IR++R+ +SQ +LG+ +GI++QQVQKYE G NRV AS L I L Sbjct: 27 HPVDFYVGQQIRIQRVRANLSQTELGKGVGISYQQVQKYEVGTNRVSASMLWEIGNFLNV 86 Query: 69 PISFFFDVSPTVCSD----ISSEENNVMDFISTPDGLQLNR 105 + FFD P + IS + N + FI+T +G +L Sbjct: 87 LPAMFFDGLPESGAGDLTQISPQANESLAFIATTEGRELVE 127 >gi|114704610|ref|ZP_01437518.1| Transcriptional Regulator, XRE family protein [Fulvimarina pelagi HTCC2506] gi|114539395|gb|EAU42515.1| Transcriptional Regulator, XRE family protein [Fulvimarina pelagi HTCC2506] Length = 117 Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 42/127 (33%), Positives = 71/127 (55%), Gaps = 11/127 (8%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + K + +D +VG +I+L R++ G+S+EKLG LGI++QQ+QKYE G NRV A RL Sbjct: 1 MYDTKAASHIDKSVGAKIKLGRLMAGLSREKLGVQLGISWQQIQKYESGANRVSAGRLHQ 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ +L I +FFD + SDI +P + + R F ++ + ++ + Sbjct: 61 IAHILGREIQWFFDEADNEPSDIGP----------SPRDIGMARKFNRLASDR-KKALEA 109 Query: 122 LVRSIVS 128 L+ + Sbjct: 110 LIDEMAR 116 >gi|315498606|ref|YP_004087410.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315416618|gb|ADU13259.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 127 Score = 67.9 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 83/120 (69%), Gaps = 1/120 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N +D+++GKR+R RR +LG++Q++L +GI FQQ+QKYE G NR+ A+RL +++ L Sbjct: 1 MANDIDLHLGKRLRRRRRLLGLTQQQLALAVGIRFQQIQKYECGANRISAARLFQLAKAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E+P+++F+D +++++ +N ++ S + L L + + ++ + R+++++L +S+ Sbjct: 61 ETPVTYFYDGLEDNTTEVAAVQNEGIEVFSRKETLDLIQAYYRL-SERPRRRLLDLAKSL 119 >gi|209966969|ref|YP_002299884.1| transcriptional regulator, Cro [Rhodospirillum centenum SW] gi|209960435|gb|ACJ01072.1| transcriptional regulator, Cro [Rhodospirillum centenum SW] Length = 191 Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 8/130 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V +G+R+R RR +LGM+Q++LG +G+TFQQVQKYE+G NRV L ++ L++ Sbjct: 20 AVSAALGERVRARRGLLGMTQQELGRRVGLTFQQVQKYERGSNRVAVPTLIKLANALDTT 79 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + D + L L +I VR ++ L +++ Sbjct: 80 PADLLEGLGATQVGS-------RDAALDRESLNLLSASRRIP-AGVRHAMVGLAKALAEG 131 Query: 130 EKKYRTIEEE 139 ++ Sbjct: 132 RSVDAAFLDQ 141 >gi|262277238|ref|ZP_06055031.1| transcription regulator [alpha proteobacterium HIMB114] gi|262224341|gb|EEY74800.1| transcription regulator [alpha proteobacterium HIMB114] Length = 121 Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 67/113 (59%), Gaps = 6/113 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++GK++RLRR LG++Q ++ + + +TFQQ+QKYEKG N V ++RL +S L+ PI Sbjct: 5 LNQHLGKKLRLRRTSLGLTQTQVAKAINVTFQQIQKYEKGTNGVSSARLLQLSSFLKVPI 64 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +FF+ S ++ + L R F + + + ++K++E++ Sbjct: 65 KYFFEDYQDFASSNEDNSSSK-----DVNYSFLLRIFSDL-EPQQKEKLLEVL 111 >gi|223041436|ref|ZP_03611639.1| hypothetical protein AM202_0055 [Actinobacillus minor 202] gi|223017694|gb|EEF16101.1| hypothetical protein AM202_0055 [Actinobacillus minor 202] Length = 127 Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 17/123 (13%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VD +GKRI+ RR LG++ L E +GI QQ+ +YE+G N++ S L I+ L++ Sbjct: 8 DVDRFIGKRIQQRRKELGLTASALSEQIGIAQQQLSRYERGDNKINVSHLVEIATALDTS 67 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I +FF +D ++ R FI + + +VR+++ + + + Sbjct: 68 IGWFF-----------------IDCLAEDSKTTHTRKFIPVGEDEVRERLTYHMDQLSAD 110 Query: 130 EKK 132 E++ Sbjct: 111 ERR 113 >gi|254485635|ref|ZP_05098840.1| transcriptional regulator, Cro/CI family, putative [Roseobacter sp. GAI101] gi|214042504|gb|EEB83142.1| transcriptional regulator, Cro/CI family, putative [Roseobacter sp. GAI101] Length = 103 Score = 67.5 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 36/102 (35%), Positives = 59/102 (57%), Gaps = 2/102 (1%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q+KL E +GI FQQ+QKYE G NRV ASRL I++ L +++FF+ + + Sbjct: 1 MTQQKLAELVGIKFQQIQKYETGANRVSASRLWDIADALNVSVAYFFEGMDSEQTKNQDV 60 Query: 88 ENNVM-DFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 +N+ D I + + L R + I + + R+++ EL R + Sbjct: 61 PDNIPADLIGDKEAMDLVRSYYAIPENQ-RRRLFELARVLSD 101 >gi|84500271|ref|ZP_00998537.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84392205|gb|EAQ04473.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 100 Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 38/101 (37%), Positives = 57/101 (56%), Gaps = 3/101 (2%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL I++ LE +SFFF+ D + Sbjct: 1 MTQQQLAERVGIKFQQIQKYETGANRVSASRLWDIADALEVSVSFFFEGLNE--EDTKAS 58 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 D + + L L R + I + + R+++ EL R + Sbjct: 59 NKIPADILGDKEALDLVRSYYAIPEAQ-RRRLFELARVLSD 98 >gi|330814062|ref|YP_004358301.1| transcriptional regulator, Cro/CI family [Candidatus Pelagibacter sp. IMCC9063] gi|327487157|gb|AEA81562.1| transcriptional regulator, Cro/CI family [Candidatus Pelagibacter sp. IMCC9063] Length = 120 Score = 67.2 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 6/109 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++GK++RLRR LG++Q ++ + + +TFQQ+QKYEKG N V ++RL ++ L+ PI Sbjct: 5 LNQHLGKKLRLRRTSLGLTQTQVAQAINVTFQQIQKYEKGTNGVSSARLLQLANFLKVPI 64 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 FFF+ E D + + L + F ++ + + I Sbjct: 65 KFFFEDYQD------FSETTQNDGTQSLNYSFLTKLFSELSSDEKSKII 107 >gi|329849657|ref|ZP_08264503.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328841568|gb|EGF91138.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 127 Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 66/106 (62%), Gaps = 1/106 (0%) Query: 29 SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEE 88 +Q++L +GI FQQ+QKYE G NR+ A+RL +++ LE+PI++F+D +++++ Sbjct: 23 TQQQLALAVGIRFQQIQKYECGANRISAARLFQLAKALETPINYFYDGLSDEKTEVAAVN 82 Query: 89 NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 N ++ S + L L + + ++ + R+++++L +S+ ++ Sbjct: 83 NEGIEVFSRKETLDLIQAYYRL-SERPRRRLLDLAKSLNGESEQAA 127 >gi|83949849|ref|ZP_00958582.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83837748|gb|EAP77044.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 99 Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 4/101 (3%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL I+ ++ +SFFFD + Sbjct: 1 MTQQQLAESVGIKFQQIQKYETGANRVSASRLWDIAGAMDVDVSFFFDGLERADAAA--- 57 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + D + + L L R + I + + R+++ EL R + Sbjct: 58 PSAAGDLLGDKEALDLVRSYYSIPENQ-RRRLFELARVLSD 97 >gi|218682257|ref|ZP_03529858.1| transcriptional regulator, XRE family protein [Rhizobium etli CIAT 894] Length = 119 Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 67/129 (51%), Gaps = 10/129 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ +R R + +SQ +LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNVRQFRALRRVSQLELGEALGLTFQQIQKYEKGANRVSASKLHQIAVFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + IS F+ S + +PD L + ++ ++ + ++ + Sbjct: 61 DVEISALFEGVSQFGSRVE----------LSPDAYALALTYDKLSSSAGKEAVKTILTLM 110 Query: 127 VSSEKKYRT 135 V + Sbjct: 111 VGEAAETAA 119 >gi|163869006|ref|YP_001610236.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018683|emb|CAK02241.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 142 Score = 67.2 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 47/119 (39%), Positives = 74/119 (62%), Gaps = 5/119 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ DI++G++IR RR +L MSQ++LG+ LG+TFQQ+QKYEKG+NRVGA RLQ I++ Sbjct: 10 TKNPHFNDISIGRKIRFRREMLKMSQKQLGDRLGVTFQQIQKYEKGLNRVGAGRLQEIAD 69 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +L+ I FF+ T + + S + L + F ++ K ++ I+ L+ Sbjct: 70 ILDISIFFFYADISTKEHVLLP----YEEMTSNQEEHTLLKSFRELK-PKQQKAILCLI 123 >gi|88854989|ref|ZP_01129654.1| helix-turn-helix motif protein [marine actinobacterium PHSC20C1] gi|88815517|gb|EAR25374.1| helix-turn-helix motif protein [marine actinobacterium PHSC20C1] Length = 489 Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 3/127 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR R G++ + LG L QV E G + S LQ ++ + + + Sbjct: 20 VGRRIRQLRTDRGLTLDDLGAALNRAASQVSVIENGKRELKLSELQKLARIFDVSVDDLL 79 Query: 75 DVSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + P + L + D + + ++ L + ++ Sbjct: 80 NAEPPSRRAALEIALERAQRGPLYNSLALPELPVRKSLSDEAI-ETVLGLHDELQRLHRE 138 Query: 133 YRTIEEE 139 EE Sbjct: 139 RAATPEE 145 >gi|222825166|dbj|BAH22323.1| transcriptional regulator [Wolbachia endosymbiont of Cadra cautella] Length = 110 Score = 66.8 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 63/117 (53%), Gaps = 11/117 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ G++Q +LG+ +G++++Q+Q+YE G N + ASRL +++ L ++ Sbjct: 1 MELGKKIKELRLYCGLTQTELGKRIGVSYRQIQRYENGSNHILASRLYDLAKALSINVAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 FF + EE L+L + + +I ++R + LV+S S Sbjct: 61 FFTDVHADSHETYDEE-----------ILKLVKGYNEIRSKRLRSVVYTLVKSFSQS 106 >gi|295396255|ref|ZP_06806433.1| helix-turn-helix motif protein [Brevibacterium mcbrellneri ATCC 49030] gi|294970909|gb|EFG46806.1| helix-turn-helix motif protein [Brevibacterium mcbrellneri ATCC 49030] Length = 502 Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 10/138 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R G++ E+LGE +G Q+ +E G + L +++ L++ + Sbjct: 36 IGRKIRHFRTEQGLTLEQLGERVGRAASQISAFESGNREPSIAVLTALAKALDTSAAELL 95 Query: 75 DVSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D +P E + + L R + + + + I+ L RS+ KK Sbjct: 96 DPTPVSQRQALELEAERAQRSPLYSSLNLPTVRV-KSLPNDAL-EAIVGLQRSLHDMTKK 153 Query: 133 YRTIEEE------CMVEQ 144 EE + E+ Sbjct: 154 RAATPEEARRTNRLLREK 171 >gi|218670926|ref|ZP_03520597.1| putative transcriptional regulator protein, Cro/CI family [Rhizobium etli GR56] Length = 98 Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 39/97 (40%), Positives = 63/97 (64%), Gaps = 1/97 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D++VGK IR++R++ +SQ +LG+ +G+TFQQ+QKYEKG NRV AS L I+ L+ + Sbjct: 1 MDVHVGKTIRIQRLLRKVSQTELGDRVGVTFQQIQKYEKGSNRVSASMLVEIAGALKVDV 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 FFD T + + + +F+ + +G+ LN F Sbjct: 61 RTFFDDLSTPDTANDNPAPS-EEFVISREGVLLNAAF 96 >gi|227507921|ref|ZP_03937970.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192635|gb|EEI72702.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 187 Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 37/63 (58%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ R+ ++Q +L E L +T Q V ++E ++ + +Q ++++ + +S+FF Sbjct: 7 IGKRIKKIRIKNQLTQNQLAEKLFVTQQTVARWENDKHQPPITAVQDLAKLFDVDVSYFF 66 Query: 75 DVS 77 Sbjct: 67 GED 69 >gi|218658899|ref|ZP_03514829.1| probable transcriptional regulator protein [Rhizobium etli IE4771] Length = 85 Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 37/80 (46%), Positives = 56/80 (70%), Gaps = 6/80 (7%) Query: 56 ASRLQHISEVLESPISFFFDVSPTVCSDI------SSEENNVMDFISTPDGLQLNRYFIQ 109 ASRLQ+IS +L P+SFFF+ +P S +S N V+DF+S+ +GLQLNR F++ Sbjct: 2 ASRLQNISSILNVPVSFFFEDAPGEHSGAIGGMAETSSSNYVVDFLSSSEGLQLNRAFVK 61 Query: 110 IDDVKVRQKIIELVRSIVSS 129 I D KVR+K++ELV+++ + Sbjct: 62 ISDPKVRRKVVELVKALAAE 81 >gi|240140055|ref|YP_002964532.1| putative transcriptional regulator [Methylobacterium extorquens AM1] gi|254562480|ref|YP_003069575.1| transcriptional regulator [Methylobacterium extorquens DM4] gi|240010029|gb|ACS41255.1| putative transcriptional regulator [Methylobacterium extorquens AM1] gi|254269758|emb|CAX25730.1| putative transcriptional regulator [Methylobacterium extorquens DM4] Length = 140 Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 9/139 (6%) Query: 2 VGNKKIP----NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 +G K+ + D+ +G+RI +R ++Q + + G++ Q+QKYEKGVNR+ A Sbjct: 1 MGRTKMAGQKTDERDVLLGRRIAEQRKRSKLTQRAVADSFGMSAAQLQKYEKGVNRISAI 60 Query: 58 RLQHISEVLESPISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQ----IDD 112 L +S + +P+S F D P + +N + L R F + Sbjct: 61 HLAILSRLTNTPVSDFLDGIPHPDPETERGFSDNGQHAYAVEPWSDLARAFARQFTETFT 120 Query: 113 VKVRQKIIELVRSIVSSEK 131 + R+++ V + K Sbjct: 121 EQQRRELSAAVEILSQELK 139 >gi|197284169|ref|YP_002150041.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227357957|ref|ZP_03842299.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194681656|emb|CAR40714.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227161692|gb|EEI46724.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 106 Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 54/102 (52%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV ++ V+ VGKRI+ RR LG + +L LG++ QQ +YE+G+N++ + L Sbjct: 1 MVKYRRANIDVNALVGKRIQKRRKELGYTGSQLAAKLGVSQQQFSRYERGLNKIDLTYLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 +++ L +PI +FF+ T S S + + + L Sbjct: 61 LLAKFLNTPIYWFFEDCITSTSVKSGKPLSRRSNLLAKKALD 102 >gi|291563729|emb|CBL42545.1| Predicted transcriptional regulators [butyrate-producing bacterium SS3/4] Length = 116 Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 1/111 (0%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 KK + DI +G+RIR R M+Q+KL E + ++ + + E G V + I+ Sbjct: 2 EKKNVSKGDIAIGQRIRKIREEKSMTQKKLAEKVMVSPSSITRLESGQTMVSVFTIIKIA 61 Query: 64 EVLESPISFFFDVSPTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 EVL + ISF + E +D +T L + F I D Sbjct: 62 EVLNTSISFLLSGDEDDLNKSDILEIAKKLDRCTTEQREILLQSFGNILDA 112 >gi|163869008|ref|YP_001610238.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018685|emb|CAK02243.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 126 Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 49/119 (41%), Positives = 74/119 (62%), Gaps = 5/119 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ DI +GKRIRLRR +L +SQ++LG+ LG+TFQQ+QKYEKG+NRVGA RLQ I++ Sbjct: 10 TKNPHSNDILIGKRIRLRREMLKISQKQLGDRLGVTFQQIQKYEKGLNRVGAGRLQEIAD 69 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +L+ I FF+ T + + S + L + F ++ K ++ I+ L+ Sbjct: 70 ILDISIFFFYADISTKEHVLLP----YEEMTSNQEEHTLLKSFRELK-PKQQKAILCLI 123 >gi|163869007|ref|YP_001610237.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018684|emb|CAK02242.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 135 Score = 66.0 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 47/118 (39%), Positives = 73/118 (61%), Gaps = 5/118 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+ DI +GKRIRLRR +L +SQ++LG+ L +TFQQ+QKYEKG+NRVGA RLQ I+++ Sbjct: 4 KNPHSNDILIGKRIRLRREMLKISQKQLGDRLSVTFQQIQKYEKGLNRVGAGRLQEIADI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L+ I FF+ T + + + + L + F ++ K ++ I+ L+ Sbjct: 64 LDISIFFFYADISTKEHVLLP----YEEMTLSQEEHTLLKSFRELK-PKQQKAILCLI 116 >gi|260575913|ref|ZP_05843908.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] gi|259021839|gb|EEW25140.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] Length = 465 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R LG++Q+ + LG++ + + E V AS + +++ + ++ Sbjct: 9 GVKLREIRARLGLTQKAFADKLGVSLPYLNQMENNHRPVSASVVLALAQEFGTDVTELTT 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F + P L R + + + ++L R+ S ++ + Sbjct: 69 NDAERIVSDMREALADPVFAAVPPPLADLRLAAS-NAPALARAFLDLHRAYRQSHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|163852720|ref|YP_001640763.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|218531560|ref|YP_002422376.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|163664325|gb|ABY31692.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] gi|218523863|gb|ACK84448.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 135 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 7/136 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K + D+ +G+RI +R ++Q + + G++ Q+QKYEKGVNR+ A L Sbjct: 1 MAGQK--TDERDVLLGRRIAEQRKRSKLTQRAVADSFGMSAAQLQKYEKGVNRISAIHLA 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQ----IDDVKV 115 +S + +P+S F D P + +N + L R F + + Sbjct: 59 ILSRLTNTPVSDFLDGIPHPDPETERGFSDNGQHAYAVEPWSDLARAFARQFTETFTEQQ 118 Query: 116 RQKIIELVRSIVSSEK 131 R+++ V + K Sbjct: 119 RRELSAAVEILSQELK 134 >gi|50954237|ref|YP_061525.1| transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950719|gb|AAT88420.1| transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] Length = 484 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 43/127 (33%), Gaps = 3/127 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R G++ ++LG + Q+ + G + L I+ L P+S Sbjct: 15 LGHRIRHFRTQRGLTLDELGGAASVAASQLSLIDNGKREPRVTLLAGIAAALGVPVSDLL 74 Query: 75 DVSPTVCSDISSEENNVMDF--ISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 P E + + GL + +R ++ L R + + Sbjct: 75 SAEPPDERAALEIELARAERSTLYGSLGLPAVKPTKGTPTETLR-ALVGLHRELGRRASE 133 Query: 133 YRTIEEE 139 EE Sbjct: 134 AIATPEE 140 >gi|307710044|ref|ZP_07646489.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619229|gb|EFN98360.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 260 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 48/108 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I +G++I+ R+ G +Q++LG +GI+ + YEKG + + ++ I Sbjct: 6 IAIVIGEKIKQYRLANGWTQQELGAKIGISKNAIGNYEKGFRSPKKNTMFDLANAFNVSI 65 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 F +S + D + P ++ Y ++ D + +++ Sbjct: 66 DDLFPPIQKDTPPTTSPIQTIYDQLEPPGQRKVITYAEKLRDEQEKRR 113 >gi|304315786|ref|YP_003850931.1| XRE family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777288|gb|ADL67847.1| transcriptional regulator, XRE family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 126 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 48/115 (41%), Gaps = 2/115 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +++ R I ++Q+ + + LG++ + YE+ +Q I++ + + Sbjct: 1 MIGDKLKSLRKIKNVTQKDIADYLGVSPSAIGLYEQNRREPDLETVQKIADFFNVSVDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSI 126 + D S + + + + G + F + + + ++ +I L+ I Sbjct: 61 LGRTNKRNVDTSDDVDERLHKVMQELGPDILLAFYDLPNMTDEEKENVITLLEGI 115 >gi|325833019|ref|ZP_08165646.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485736|gb|EGC88201.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 242 Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K + +++ + +R+ R G SQE+L E LG++ Q V K+E+ + L Sbjct: 1 MSPTSKKGSFMNVEIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLI 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 ++++ + + V D++ EE + R Sbjct: 61 ALAKLYGVSLDDLLRIDEDVVDDVAFEEKDKDATAEAQAQEAAVRA 106 >gi|212710089|ref|ZP_03318217.1| hypothetical protein PROVALCAL_01142 [Providencia alcalifaciens DSM 30120] gi|212687296|gb|EEB46824.1| hypothetical protein PROVALCAL_01142 [Providencia alcalifaciens DSM 30120] Length = 94 Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 2 VGNKKIPN--PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 + K+ P+ VG RI+ R G++ ++ L ++ QQ +YE+G+NR+ L Sbjct: 1 MKEIKMTGKYPIAKIVGSRIKKLRKEYGLTGTEIAAYLNVSQQQFSRYERGINRIDIDSL 60 Query: 60 QHISEVLESPISFFFDV 76 I++ + I +FF+ Sbjct: 61 VMIADFFKISIHYFFED 77 >gi|227822741|ref|YP_002826713.1| putative transcriptional regulator, XRE familiy [Sinorhizobium fredii NGR234] gi|227341742|gb|ACP25960.1| putative transcriptional regulator, XRE familiy [Sinorhizobium fredii NGR234] Length = 122 Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 35/79 (44%), Positives = 50/79 (63%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PN +D VG RIRLRR LGM +E LG LG+ QV++YE+G RV A++L +++VL+ Sbjct: 5 PNSIDAFVGHRIRLRRKALGMDEENLGAALGVPVAQVRRYEQGTRRVCAAQLLAMADVLQ 64 Query: 68 SPISFFFDVSPTVCSDISS 86 +FFF+ SP + Sbjct: 65 VHFTFFFEESPASGGGLLK 83 >gi|150021357|ref|YP_001306711.1| putative prophage repressor [Thermosipho melanesiensis BI429] gi|149793878|gb|ABR31326.1| putative prophage repressor [Thermosipho melanesiensis BI429] Length = 206 Score = 65.2 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 40/96 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R+ G++QE+LG + + + + YE G L+ +++ + + + Sbjct: 1 MNIGEKIKFLRLQKGLTQEQLGNIINVGQRTISAYESGKATPSVEVLKSLADYFDVAVDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 F P + + + N F Sbjct: 61 FLSDKPGQTEVEFVDIKFKKVPLYSAPVSAGNGAFP 96 >gi|317016318|gb|ADU85831.1| transcriptional regulator [Bartonella sp. TT0105] Length = 118 Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 49/118 (41%), Positives = 74/118 (62%), Gaps = 5/118 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + D++VGK+IRLRR +L MSQ++LGE LG+TFQQ+QKYEK NR+GA RLQ I+++ Sbjct: 4 KNQHVNDLSVGKKIRLRREMLKMSQKQLGELLGVTFQQIQKYEKATNRIGAGRLQEIADI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 ISFF+ S + + IS+ + L + F Q+ + K ++ I+ L+ Sbjct: 64 FNVDISFFYTD----ISKEKKFPHPYDEGISSKEEYFLLKGFRQL-NPKKQKAILWLI 116 >gi|302381689|ref|YP_003817512.1| hypothetical protein Bresu_0574 [Brevundimonas subvibrioides ATCC 15264] gi|302192317|gb|ADK99888.1| helix-turn-helix domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 128 Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 77/123 (62%), Gaps = 1/123 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D+++G+R+R RR +LG++Q++L +GI FQQ+QKYE G NR+ A+RL +SE L Sbjct: 1 MATDIDLHLGRRLRRRRRLLGLTQQQLAIQVGIRFQQIQKYECGANRISAARLWQLSEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E+PIS+F+D + N + S + L L + + Q+ + R+++++L +S+ Sbjct: 61 ETPISYFYDGLAEAMERRETASANGGEMFSRKETLDLIQAYYQLG-ERPRRRLLDLAKSL 119 Query: 127 VSS 129 S Sbjct: 120 HSE 122 >gi|58699287|ref|ZP_00374078.1| transcriptional regulator [Wolbachia endosymbiont of Drosophila ananassae] gi|58534195|gb|EAL58403.1| transcriptional regulator [Wolbachia endosymbiont of Drosophila ananassae] Length = 109 Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 11/118 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ ++Q +LG+ +G++++Q+QKYE G N V ASRL +++ L ++ Sbjct: 1 MQLGKKIKQLRLDRALTQTELGKRIGVSYRQIQKYENGSNCVLASRLYDLAKALSIDVAN 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FF T + EE L+L + + +I ++R + LV+S S+ Sbjct: 61 FFTDMHTDSHEAYDEE-----------ILKLVKGYNEIKSKRLRSAVYILVKSFSQSD 107 >gi|254478231|ref|ZP_05091612.1| Helix-turn-helix domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035827|gb|EEB76520.1| Helix-turn-helix domain protein [Carboxydibrachium pacificum DSM 12653] Length = 218 Score = 64.8 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 8/126 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD- 75 +R+R R G+ Q+ + + LGIT YE+G L+ +S+ I + Sbjct: 93 QRLRQLREEKGLLQKDVAKILGITPSAYGYYEQGKREPSMEVLKKLSDFFNVSIDYLLGR 152 Query: 76 -------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 T E + + + L+L + K ++II ++++I Sbjct: 153 TDIRSPVDEITEAVSDDPELFEFWNTLKEREDLKLLFKQTKKLSPKDIKQIIRIIKAIED 212 Query: 129 SEKKYR 134 E K Sbjct: 213 EEDKEE 218 >gi|240850955|ref|YP_002972355.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268078|gb|ACS51666.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 119 Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats. Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 6/119 (5%) Query: 6 KIPN-PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + PN +D+ VGK+IR RR +L MSQ+ LG LG+TFQQ+QKYEKG+NRV A RL+ IS+ Sbjct: 2 QTPNLNIDLFVGKKIRFRRKMLKMSQKTLGHHLGVTFQQIQKYEKGLNRVSAGRLKEISD 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +L+ PI+FF+ T D I++ L +I ++ I++L+ Sbjct: 62 ILDVPIAFFYADIITK-----KHTPYHHDEIASSKEEYLLLKSFRILTSVKQKAILKLI 115 >gi|302337126|ref|YP_003802332.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634311|gb|ADK79738.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 132 Score = 64.5 bits (155), Expect = 4e-09, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 3/124 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R G+SQ LGE +G+++QQ+QKYE G + + A +L I+E+L PI FF Sbjct: 8 IGRNIRSYRKACGLSQASLGEKVGVSYQQIQKYENGASSISAFQLGRIAEILAVPIDCFF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ---LNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + ++ ++ + L + +I +++ + + +I E+ Sbjct: 68 HLDTESGAEAPPAYSSEIGDEFLRVSQDERKLLLRYREIKTPLIKKYLQNHMNAIRELER 127 Query: 132 KYRT 135 Sbjct: 128 NLDE 131 >gi|269126718|ref|YP_003300088.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311676|gb|ACY98050.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 478 Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 51/136 (37%), Gaps = 4/136 (2%) Query: 7 IPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + + VD + G+R+R R GM+ LG +G Q+ E G S L+ ++ Sbjct: 1 MSSDVDLVTFGQRLRHLRRARGMTLADLGAKVGRAPSQLSLLENGRREPKLSLLKSLAAA 60 Query: 66 LESPISFFFDVSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 LE P+ P E D + GL + ++ + V + I+ L Sbjct: 61 LEVPVEELLRRQPPSRRAQLEIALEEAQRDPLYRSLGLPYLKVGKRLPND-VIEHILALY 119 Query: 124 RSIVSSEKKYRTIEEE 139 + S K EE Sbjct: 120 GELKRSRTKPTASPEE 135 >gi|291302787|ref|YP_003514065.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572007|gb|ADD44972.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 503 Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 3/129 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++GKRIR R GM+ + GE +G Q+ E G S L+ ++ L Sbjct: 33 ISLGKRIRHLRKQRGMTLDAFGEAIGTAPSQLSMIENGKREPKLSMLRALARELGVSSDE 92 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVRQKIIELVRSIVSSE 130 P E S L L R ++ +V + ++ L R + Sbjct: 93 LLRTEPPNRRVALEIELERAQQSSGYQSLGLPSVRPSARVPT-EVLEALVGLHREVERQV 151 Query: 131 KKYRTIEEE 139 + EE Sbjct: 152 NLHAATPEE 160 >gi|220925738|ref|YP_002501040.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950345|gb|ACL60737.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 149 Score = 64.5 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 5/126 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + D+++G+RI R +S+E L + LGI+ Q KYEKG+NR+ A+ L + + Sbjct: 4 KPADARDVHIGQRIERLRKQAKLSREALAQRLGISDSQFGKYEKGLNRMSAADLDFVGRL 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFI-----STPDGLQLNRYFIQIDDVKVRQKII 120 + PI +FF+ P + + T + R + RQ++ Sbjct: 64 FDVPIGYFFEGLPRGEAAGPGLAERPQAVLLGEAPWTDFAGAVARAADAHLGTEDRQRLA 123 Query: 121 ELVRSI 126 +V+++ Sbjct: 124 AVVKAL 129 >gi|240851038|ref|YP_002972438.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268161|gb|ACS51749.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 126 Score = 64.1 bits (154), Expect = 5e-09, Method: Composition-based stats. Identities = 45/118 (38%), Positives = 74/118 (62%), Gaps = 5/118 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + DI++GK+IR RR ++G SQ++LG LG+TFQQ+QKYEKG+NRV A RLQ I+ + Sbjct: 4 KNLHFYDISLGKKIRFRRNLMGFSQKQLGSHLGVTFQQIQKYEKGLNRVSARRLQEIAHI 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L+ P+SFF+ + + + D + + L + F ++ K ++ I++L+ Sbjct: 64 LDVPVSFFYADNTKKEDPL----YHCDDRVESKAEYLLLKSF-RMMTRKKQRAILQLI 116 >gi|149915319|ref|ZP_01903846.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] gi|149810608|gb|EDM70449.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] Length = 466 Score = 64.1 bits (154), Expect = 5e-09, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R LG++Q+ LG++ + + E V + + +++ ++ Sbjct: 9 GAKLRETRQRLGLTQKDFATKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGFDVTELST 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F P L R + + + +EL R+ + ++ + Sbjct: 69 GDAERMVSDMREALADPVFADDPPPLADLRLTAS-NAPALARAFLELHRAYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|167036463|ref|YP_001664041.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114889|ref|YP_004185048.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855297|gb|ABY93705.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319927980|gb|ADV78665.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 129 Score = 64.1 bits (154), Expect = 5e-09, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 8/129 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRI+ R G++Q++L LGI+ + V YE G LQ I++ + Sbjct: 1 MLGKRIKELRKKKGITQKELASYLGISDRAVGYYESGQRTPPPDILQKIADFFNVSTDYL 60 Query: 74 FD--------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 T E + + L+L + K ++II ++++ Sbjct: 61 LGRTNIYNPADEITEAVFDDPELLEFWRELKEREDLKLLFKQTKKLSPKDIKQIIRIIKA 120 Query: 126 IVSSEKKYR 134 I E K Sbjct: 121 IEDEEDKGE 129 >gi|170781903|ref|YP_001710235.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169156471|emb|CAQ01619.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 487 Score = 64.1 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 1/126 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R G++ + LGE GI Q+ E G S L I+ L+ ++ Sbjct: 18 IGRRIRHARKGAGLTLQALGERAGILPSQLSMIENGRRETRLSTLGRIAGALDVDVTHLL 77 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL-NRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 E + S L L + + + ++ L R + ++ Sbjct: 78 AADAPDARSALEIELDRAQRSSLYGSLGLPAVPASRALPQETLEALVGLHRELARRARES 137 Query: 134 RTIEEE 139 EE Sbjct: 138 IATPEE 143 >gi|94967298|ref|YP_589346.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94549348|gb|ABF39272.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 118 Score = 63.7 bits (153), Expect = 7e-09, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 4/117 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+ IR R+ GMSQ + + G+ + + E G L I+ ++ ++ Sbjct: 1 MNIGETIRNFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTIPSLDTLAKIASAMDVALAT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 FF +P SS + + L R + + R+ ++ +V+ + +S Sbjct: 61 FFSDAPADNGTKSSPQVSDEVL----RFLNQIRRYSSGLNDSDRRLVLTMVKKMAAS 113 >gi|291326970|ref|ZP_06126519.2| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291312079|gb|EFE52532.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 95 Score = 63.7 bits (153), Expect = 7e-09, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 39/91 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +VG +IR R GMS + L LGI+ Q +YE G + + ++++ Sbjct: 1 MKRKISKSVGLKIRSLRESHGMSGKDLSILLGISQQHQSRYENGEVNIHVDTIYQLAQIF 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFIST 97 ++FF + T + N F + Sbjct: 61 NVSPTYFFTETITDINSTELSVNKKNYFSAE 91 >gi|220911489|ref|YP_002486798.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858367|gb|ACL38709.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 504 Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 3/129 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+R+R R G++ + L +G Q+ E G + LQH++ L I Sbjct: 34 IALGRRVRHLRKQAGLTLDGLSAAVGTAPSQLSLIENGKREPKLTLLQHLAAALNVSIDQ 93 Query: 73 FFDVSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 P E + L R ++ V + + L+ + Sbjct: 94 LLGAEPPSRRAALEIELERYQRGPLYESLNLPKIRISSRLPLD-VLEAQVGLLHELERKM 152 Query: 131 KKYRTIEEE 139 + EE Sbjct: 153 NEQVATPEE 161 >gi|146278343|ref|YP_001168502.1| hypothetical protein Rsph17025_2308 [Rhodobacter sphaeroides ATCC 17025] gi|145556584|gb|ABP71197.1| protein of unknown function DUF955 [Rhodobacter sphaeroides ATCC 17025] Length = 461 Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 2/125 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R+ LG++Q+ E LG + + + E V A+ + +++ ++ Sbjct: 8 GAKLRELRVKLGLTQKVFAERLGASLPYLNQMENNHRPVSATVVLALAQEFGVDVTKLTT 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F +P L + + ++L R+ + ++ + Sbjct: 68 SEAERIVTDMREALADPIFTDSPPLADLRLVASNA--PALARAFLDLHRAYRQTHERLAS 125 Query: 136 IEEEC 140 ++E Sbjct: 126 LDEAL 130 >gi|72161782|ref|YP_289439.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71915514|gb|AAZ55416.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 481 Score = 63.7 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 4/135 (2%) Query: 8 PNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+ +D + G+R+R R M+ +LGE +G Q+ E G S L +++ L Sbjct: 5 PSDLDLVTFGQRLRHLRRARNMTLAELGERVGRAPSQLSLLENGKREPKLSLLTALAKAL 64 Query: 67 ESPISFFFDVSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + P E D + L + ++ + V + I+ L Sbjct: 65 DVSVEELLSRQPPSRRAQLEIALEEAQRDPLYQSLNLPHLKVGKRVPND-VLEHIVTLYE 123 Query: 125 SIVSSEKKYRTIEEE 139 + K T EE Sbjct: 124 ELKRRAAKPTTTNEE 138 >gi|294792345|ref|ZP_06757493.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 6_1_27] gi|294457575|gb|EFG25937.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 6_1_27] Length = 128 Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 3/120 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R ++ ++LGE L + + +E A ++ I+ V I + Sbjct: 4 LGQRIKQLRKFQHLTGDELGEKLNVGRSAISLWETDARMPSAEMIKLIANVFNVSIDYLL 63 Query: 75 DVSPTVCSDI---SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 D E + + I L+L + + II + +S++ E+ Sbjct: 64 TGEHPTTDDGYYYDPEVAELAEEIKNDPDLRLLLDAKRSLSKSEMESIINITKSLLQRER 123 >gi|253700083|ref|YP_003021272.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251774933|gb|ACT17514.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 114 Score = 63.7 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 64/118 (54%), Gaps = 12/118 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G IR R G+SQEKL E +G++FQQ+QKYE G + +LQHI+ L+ ++ F Sbjct: 9 EIGTLIRRYRQDAGLSQEKLAEMVGVSFQQIQKYENGHTTLNIIKLQHIAAALKVAVTDF 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FD +P ++ EE+ QL + F ++ ++R I++LV ++ K Sbjct: 69 FDAAPVKGVRLTGEED------------QLLQAFRKVKSGELRGCILKLVDNVNKRTK 114 >gi|77462735|ref|YP_352239.1| MerR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126461627|ref|YP_001042741.1| hypothetical protein Rsph17029_0858 [Rhodobacter sphaeroides ATCC 17029] gi|221638596|ref|YP_002524858.1| MerR family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332557618|ref|ZP_08411940.1| Transcriptional regulator, MerR family protein [Rhodobacter sphaeroides WS8N] gi|77387153|gb|ABA78338.1| transcriptional regulator, MerR family [Rhodobacter sphaeroides 2.4.1] gi|126103291|gb|ABN75969.1| protein of unknown function DUF955 [Rhodobacter sphaeroides ATCC 17029] gi|221159377|gb|ACM00357.1| Transcriptional regulator, MerR family [Rhodobacter sphaeroides KD131] gi|332275330|gb|EGJ20645.1| Transcriptional regulator, MerR family protein [Rhodobacter sphaeroides WS8N] Length = 461 Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 46/125 (36%), Gaps = 2/125 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R+ LG++Q+ E LG + + + E V A+ + +++ ++ Sbjct: 8 GAKLRELRVKLGLTQKVFAERLGASLPYLNQMENNHRPVSATVVLALAQEFGVDVTKLTT 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F +P L + ++L R+ + ++ + Sbjct: 68 SEAERIVTDMREALADPVFTDSPPLADLRLVASNA--PAFARAFLDLHRAYRQTHERLAS 125 Query: 136 IEEEC 140 ++E Sbjct: 126 LDEAL 130 >gi|84684043|ref|ZP_01011945.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84667796|gb|EAQ14264.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 120 Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 62/122 (50%), Gaps = 10/122 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +P+D+ +G+RIR R+ G++Q++L +G+ FQQ+QKYE NRV SRL IS+ L Sbjct: 1 MKHPIDVFIGRRIREERVAAGLTQKELSILIGVKFQQLQKYETAANRVSGSRLWMISKAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+S F + E + + L+ K++ ++I VR+I Sbjct: 61 AVPMSSFLPDGVELPISEKDAEPSDARLMRDILMLE----------PKLKLELIRFVRAI 110 Query: 127 VS 128 Sbjct: 111 SR 112 >gi|134098034|ref|YP_001103695.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291007202|ref|ZP_06565175.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910657|emb|CAM00770.1| transcriptional regulator, XRE family [Saccharopolyspora erythraea NRRL 2338] Length = 488 Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 50/140 (35%), Gaps = 4/140 (2%) Query: 3 GNKKIPNPVDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 ++ D+ V G+R+R R G++ +LGE +G Q+ E G S L+ Sbjct: 8 EDRNFSTDQDLLVFGQRLRHLRRAAGLTLVELGERVGRAPSQLSLLENGHREPKLSLLRS 67 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVM--DFISTPDGLQLNRYFIQIDDVKVRQKI 119 +++ L S + P D + L + ++ + + + Sbjct: 68 LADALGSSVDELMSKKPPNRRAELEIAVEQAQLDPLYQRLSLPPLKVGKRVPTEAL-EHV 126 Query: 120 IELVRSIVSSEKKYRTIEEE 139 + L + E K EE Sbjct: 127 LALYDELKRRENKQVATPEE 146 >gi|227873925|ref|ZP_03992145.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840231|gb|EEJ50641.1| transcriptional regulator [Oribacterium sinus F0268] Length = 213 Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 2/98 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ RM +QE++ E LG++ Q + +E G + + +SE + + Sbjct: 5 IGSKIKAARMEKKFTQEQVAEVLGVSRQTISNWENGKSYPDIISVIKMSECYGVSLDYLL 64 Query: 75 DVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQI 110 + D E NV+ + + + ++ I Sbjct: 65 KGEEKMSGYYDFLEESTNVVKSTGNRNKIIIILSYMLI 102 >gi|19745754|ref|NP_606890.1| repressor protein [Streptococcus pyogenes MGAS8232] gi|139474145|ref|YP_001128861.1| phage repressor protein [Streptococcus pyogenes str. Manfredo] gi|306827718|ref|ZP_07460990.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782] gi|19747895|gb|AAL97389.1| putative repressor protein [Streptococcus pyogenes MGAS8232] gi|134272392|emb|CAM30648.1| putative phage repressor protein [Streptococcus pyogenes str. Manfredo] gi|304430036|gb|EFM33073.1| phage transcriptional repressor [Streptococcus pyogenes ATCC 10782] Length = 254 Score = 63.3 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 62/142 (43%), Gaps = 10/142 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K++ + +G +I+ R G++Q++L + + + YEKG + L Sbjct: 1 MNDKELA----LYIGSKIKELRKNKGLTQKELAILVNMGDTTIANYEKGFRTPKKNTLFK 56 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ L I F S + ++ + ++P ++ ++++ + +QK+++ Sbjct: 57 LANALSVTIDDLF-----PPIKKSDKTSHELKIPTSPLVKKITTTVVELNVPR-KQKVLD 110 Query: 122 LVRSIVSSEKKYRTIEEECMVE 143 + +K T E+ + E Sbjct: 111 FATEQLKEQKNKITSIEKKLYE 132 >gi|83955346|ref|ZP_00964001.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83840339|gb|EAP79513.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 103 Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 2/102 (1%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q++L E +GI FQQ+QKYE G NRV ASRL I+ L +S FF+ Sbjct: 1 MTQQRLAELVGIKFQQIQKYETGANRVSASRLWDIAFALNVDVSHFFEGLEAEKPQPEKA 60 Query: 88 ENNVMDFIS-TPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 +N+ +S + + L R + I + + R+++ EL R + Sbjct: 61 LDNIPADLSGDKEAMDLIRSYYAIPENQ-RRRLFELARVLSD 101 >gi|325962046|ref|YP_004239952.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468133|gb|ADX71818.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 504 Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 3/129 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G+R+R R G++ + L +G Q+ E G LQH++ L I Sbjct: 34 ISLGRRVRHLRKQAGLTLDDLSAAVGTAPSQLSLIENGKREPKLGLLQHLASALNVSIDQ 93 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVRQKIIELVRSIVSSE 130 P E + L L R ++ V + + L+ + Sbjct: 94 LLGAEPPSRRAALEIELERYQRSPLYETLNLPKIRISSRLPLD-VLEAQVGLLHELERKM 152 Query: 131 KKYRTIEEE 139 + EE Sbjct: 153 NEQVATPEE 161 >gi|170750881|ref|YP_001757141.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657403|gb|ACB26458.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 135 Score = 62.9 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 7/131 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K + D+ VG+RI +R ++Q ++ + G++ Q+QKYEKG NR+ A L Sbjct: 1 MAGQK--TDQRDVYVGQRIAEQRRKASLTQRRVAQSFGMSAAQLQKYEKGTNRISAVHLD 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN-----RYFIQIDDVKV 115 S + P+ +FF P I+ + + GL+ R+ + + Sbjct: 59 IFSRMTGVPMDYFFKGMPRNDDFIAPGFSEREQSTLSEAGLKGLAEVVGRHITENFSEEA 118 Query: 116 RQKIIELVRSI 126 R+ + + +R++ Sbjct: 119 RRDVADAIRAL 129 >gi|89069702|ref|ZP_01157039.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516] gi|89044782|gb|EAR50888.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516] Length = 96 Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 33/97 (34%), Positives = 56/97 (57%), Gaps = 2/97 (2%) Query: 33 LGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVM 92 + E +GI FQQ+QKYE G+NRV ASRL I+ VL I FFF+ + ++ + Sbjct: 1 MAEKVGIKFQQIQKYETGMNRVSASRLWDIASVLGVKIDFFFEGLGETETPANAN-DLPG 59 Query: 93 DFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + ++ + L+L R + I + + R+++ EL R + + Sbjct: 60 NILTDREALELLRSYYAIPENQ-RKRLFELARVLSEA 95 >gi|163868772|ref|YP_001609996.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018443|emb|CAK02001.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 119 Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 47/113 (41%), Positives = 73/113 (64%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRL+R ILGMSQ+ LG+ LG++FQQ+QKYEKG+NRV A RL+ IS++L P+ Sbjct: 8 IDLFVGKKIRLKRKILGMSQKTLGDALGVSFQQIQKYEKGLNRVSAGRLKEISDILNVPV 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 FF+ T + + S+ + L + F + VK ++ I++L+ Sbjct: 68 FFFYTDIITNENTSYP----HEEIASSKEEFLLLKSFRVLTSVK-QKTILKLI 115 >gi|215486344|ref|YP_002328775.1| transcriptional repressor DicA [Escherichia coli O127:H6 str. E2348/69] gi|254792795|ref|YP_003077632.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. TW14359] gi|260843554|ref|YP_003221332.1| putative phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|261257017|ref|ZP_05949550.1| putative phage repressor protein CI [Escherichia coli O157:H7 str. FRIK966] gi|215264416|emb|CAS08774.1| predicted phage repressor protein [Escherichia coli O127:H6 str. E2348/69] gi|254592195|gb|ACT71556.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. TW14359] gi|257758701|dbj|BAI30198.1| predicted phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|323977164|gb|EGB72251.1| helix-turn-helix protein [Escherichia coli TW10509] Length = 135 Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 2/108 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR RR +G+SQ L + G++ + +E L ++EVL+ ++ Sbjct: 6 LGQRIRERRKQVGLSQNDLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTWIL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 D N+ +D + D L++ R + + + + +I EL Sbjct: 66 FGDEDKTPDPPVALNSALDL--SEDELEMLRLYRALPKSEQQAQISEL 111 >gi|308181771|ref|YP_003925899.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047262|gb|ADN99805.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 188 Score = 62.5 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 39/63 (61%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ +R+ L ++Q ++ E L +T Q V ++E G + + +Q +SE+ + P ++FF Sbjct: 5 IGQRIKAKRLELKLTQNQVAEKLFVTQQTVARWENGKHTLPVKAVQDLSELFDVPTAYFF 64 Query: 75 DVS 77 Sbjct: 65 GED 67 >gi|218694781|ref|YP_002402448.1| transcriptional repressor DicA [Escherichia coli 55989] gi|309793330|ref|ZP_07687757.1| transcriptional repressor DicA [Escherichia coli MS 145-7] gi|218351513|emb|CAU97222.1| putative repressor protein of division inhibition from phage origin [Escherichia coli 55989] gi|308122917|gb|EFO60179.1| transcriptional repressor DicA [Escherichia coli MS 145-7] Length = 152 Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 2/108 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR RR +G+SQ L + G++ + +E L ++EVL+ ++ Sbjct: 23 LGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTWIL 82 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++ +D + D L++ R + + + + ++ EL Sbjct: 83 FGDEDKTPAPPVSLDSTLDL--SEDELEMLRLYRALPKSEQQAQLSEL 128 >gi|323357088|ref|YP_004223484.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323273459|dbj|BAJ73604.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 479 Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 3/127 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R+ G++ ++LG +G+ Q+ E G S LQ I+ E+ ++ Sbjct: 10 LGHRIRHHRLARGLTLDELGALVGVAGSQLSLIENGKREPKLSLLQEIARATETEVTELL 69 Query: 75 DVSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 P E G+ + D + + ++ L R + E++ Sbjct: 70 STEPPNRRAALEIELERAQSSPFFQQLGIPPVKVTKGTTD-ETIEAVLGLHRELQRRERE 128 Query: 133 YRTIEEE 139 EE Sbjct: 129 TIASPEE 135 >gi|268590899|ref|ZP_06125120.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] gi|291313692|gb|EFE54145.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] Length = 102 Score = 62.1 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 37/69 (53%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ VG RI+ R G++ ++ L ++ QQ +YE+G+NR+ L I++ L+ Sbjct: 6 PIAKIVGSRIKKLRREYGLTGTEVAMALNVSQQQFSRYERGINRIDIDSLVMIADFLKVS 65 Query: 70 ISFFFDVSP 78 + +F + Sbjct: 66 VHYFLEDID 74 >gi|114764625|ref|ZP_01443829.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114543001|gb|EAU46021.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 463 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 2/128 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R LG++Q+ LGI+ + + E V + + +++ ++ Sbjct: 9 GAKLRDLRGRLGLTQKDFAGKLGISLPYLNQMENNNRPVSTTVVLALAQEFGFDVTELGQ 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F +P L + + +EL R+ + ++ + Sbjct: 69 GDSERLVSDMREALADPIFGESPPLADLRLTASNA--PALARAFLELHRAYRQTHERLAS 126 Query: 136 IEEECMVE 143 ++E E Sbjct: 127 LDEALGRE 134 >gi|289550028|ref|YP_003470932.1| hypothetical protein SLGD_00657 [Staphylococcus lugdunensis HKU09-01] gi|289179560|gb|ADC86805.1| hypothetical protein SLGD_00657 [Staphylococcus lugdunensis HKU09-01] Length = 112 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 5/97 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I+ R G++Q++L L T Q V K+E+G A + +++++ Sbjct: 1 MKLAEQIKKYRKEQGLTQDQLAAELHTTRQTVSKWEQGSIEPNAQMIVNLAQMFNITTDE 60 Query: 73 FFDVSP-----TVCSDISSEENNVMDFISTPDGLQLN 104 ++ ++ N DF+S L Sbjct: 61 LLTGENMSNFTKELNETGTDHLNFWDFLSQKWWFVLA 97 >gi|254420597|ref|ZP_05034321.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196186774|gb|EDX81750.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 133 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 39/125 (31%), Positives = 74/125 (59%), Gaps = 4/125 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D+++G+R+R RR +LG++Q++L +GI FQQ+QKYE G NR+ A+RL ++E L Sbjct: 4 MATDIDLHLGRRLRRRRRLLGLTQQQLAVQVGIRFQQIQKYECGANRISAARLWQLAEAL 63 Query: 67 ESPISFFFDVSP---TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 E+P+S+F+D + S + L L + + Q+ + R+++++L Sbjct: 64 ETPVSYFYDGVTEALERKDAAPGTSAGGGEMFSRKETLDLIQAYYQLG-ERPRRRLLDLA 122 Query: 124 RSIVS 128 +S+ Sbjct: 123 KSLHD 127 >gi|148988905|ref|ZP_01820320.1| Transcriptional regulator, Cro/CI family protein [Streptococcus pneumoniae SP6-BS73] gi|147925716|gb|EDK76792.1| Transcriptional regulator, Cro/CI family protein [Streptococcus pneumoniae SP6-BS73] Length = 245 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 55/135 (40%), Gaps = 18/135 (13%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +VG++I+ R G +Q L E + + Q + KYEKG+ +V + ++++ Sbjct: 2 DNLAQHVGEKIKFFRKENGWTQSVLAEKMSTSKQTISKYEKGIIKVNQDTIFKLADIFGV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 I FF + S ++ + Q+ + + + L + + Sbjct: 62 SIDSFFPSIIEEIATTSPIQS----------------IYDQLTPPRQEKALTYLKKQL-- 103 Query: 129 SEKKYRTIEEECMVE 143 E+K I E ++ Sbjct: 104 LEQKNENIVSENIIS 118 >gi|146298395|ref|YP_001192986.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146152813|gb|ABQ03667.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 131 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 12/143 (8%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + PN ++G++I R + M QE L + LG Q + E + ++L Sbjct: 1 MSTATKPN----HIGRKISRIRELRDMKQEALAQALGTNQQAISTIE-NSETIDEAKLIE 55 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I++ L S N + + G N I + K++E Sbjct: 56 IAKALGVTPEAIKSFSEE-------NVFNYFNTFTDSHGNFGNFASGAICNFNPLDKVVE 108 Query: 122 LVRSIVSSEKKYRTIEEECMVEQ 144 L +V EK E+ M + Sbjct: 109 LYERLVQVEKDKVEYLEKLMKGK 131 >gi|163869143|ref|YP_001610382.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018829|emb|CAK02387.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 121 Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 54/113 (47%), Positives = 71/113 (62%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRLRR L MSQ LG LGI+FQQVQKYEKG+NRV A RL IS++L PI Sbjct: 8 IDLFVGKKIRLRRKRLKMSQTTLGNALGISFQQVQKYEKGLNRVSAGRLMEISDILNVPI 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 SFF+ T +SS + IS + QL + F + +K R I++L+ Sbjct: 68 SFFYADIITKQHALSS----HDEVISNTEEYQLLKKFRVLTTIKKR-AILQLL 115 >gi|293433714|ref|ZP_06662142.1| transcriptional repressor DicA [Escherichia coli B088] gi|291324533|gb|EFE63955.1| transcriptional repressor DicA [Escherichia coli B088] Length = 135 Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 2/108 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR RR +G+SQ L + G++ + +E L ++EVL+ ++ Sbjct: 6 LGQRIRERRKQVGLSQNDLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTWIL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 D NN +D ++ R + + + + +I EL Sbjct: 66 FGDEDKTPDPPVALNNALDLSEDEF--EMLRLYRALPKSEQQAQISEL 111 >gi|271964933|ref|YP_003339129.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270508108|gb|ACZ86386.1| transcriptional regulator protein-like protein [Streptosporangium roseum DSM 43021] Length = 489 Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 3/129 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I G+R+R R G++ LGE + Q+ E G S L+ ++ L P+ Sbjct: 19 IAFGQRLRHLRKQRGLTLSDLGERVSRAPSQLSLLENGKREPKLSLLKSLATALNVPVEE 78 Query: 73 FFDVSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 E D + GL + ++ + V + I+ L + S + Sbjct: 79 LLRRQAPSRRAQLEMALEEAQRDPLYAGLGLARLKVSARVPND-VLEHILGLYGELRSRQ 137 Query: 131 KKYRTIEEE 139 K EE Sbjct: 138 AKGTATPEE 146 >gi|218705070|ref|YP_002412589.1| transcriptional repressor DicA [Escherichia coli UMN026] gi|291283201|ref|YP_003500019.1| DicA-like protein [Escherichia coli O55:H7 str. CB9615] gi|300895972|ref|ZP_07114540.1| transcriptional repressor DicA [Escherichia coli MS 198-1] gi|301326444|ref|ZP_07219796.1| transcriptional repressor DicA [Escherichia coli MS 78-1] gi|218432167|emb|CAR13055.1| putative repressor protein of division inhibition from phage origin [Escherichia coli UMN026] gi|290763074|gb|ADD57035.1| DicA-like protein [Escherichia coli O55:H7 str. CB9615] gi|300360122|gb|EFJ75992.1| transcriptional repressor DicA [Escherichia coli MS 198-1] gi|300846860|gb|EFK74620.1| transcriptional repressor DicA [Escherichia coli MS 78-1] gi|320652127|gb|EFX20458.1| transcriptional repressor DicA [Escherichia coli O157:H- str. H 2687] gi|320657721|gb|EFX25510.1| transcriptional repressor DicA [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 152 Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 2/108 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR RR +G+SQ L + G++ + +E L ++EVL+ ++ Sbjct: 23 LGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTWIL 82 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++ +D + D L++ R + + + + ++ EL Sbjct: 83 FGDEDKTPAPPVSLDSALDL--SEDELEMLRLYRALPKSEQQAQLSEL 128 >gi|163838939|ref|YP_001623344.1| HTH transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162952415|gb|ABY21930.1| HTH transcriptional regulator [Renibacterium salmoninarum ATCC 33209] Length = 551 Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 45/134 (33%), Gaps = 4/134 (2%) Query: 9 NPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + +D+ +G+R+R R M+ + LG + Q+ E G S L +++ L Sbjct: 71 DEIDVISLGRRVRHLRKSANMTLDDLGLMVDAAPSQLSMIENGKREPKLSLLNSLAKSLG 130 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDF--ISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 I P E + GL R ++ + + ++ L Sbjct: 131 VSIEQLLGSEPPSRRAALEIELERAQRGALYESLGLPKVRVSSRLSMDAL-EALVGLQAE 189 Query: 126 IVSSEKKYRTIEEE 139 + + EE Sbjct: 190 LERRLNEQVATPEE 203 >gi|224543830|ref|ZP_03684369.1| hypothetical protein CATMIT_03051 [Catenibacterium mitsuokai DSM 15897] gi|224523249|gb|EEF92354.1| hypothetical protein CATMIT_03051 [Catenibacterium mitsuokai DSM 15897] Length = 217 Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++QE++ E LG++ Q + +E + + +SE + + + Sbjct: 5 IGSKIKAARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLL 64 Query: 75 DVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQI 110 + + D E NV+ + + + ++ I Sbjct: 65 KGEEKMKNYYDYLEESTNVVKSNTNRNKIVTILSYLLI 102 >gi|49476080|ref|YP_034121.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49476154|ref|YP_034195.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238888|emb|CAF28181.1| Transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238962|emb|CAF28260.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 128 Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 5/112 (4%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI VGK+IR RR +L MSQ+ L + L ++ QQ+QKYE G+NRV A RL+ I+++L PI+ Sbjct: 15 DIFVGKKIRFRRKMLKMSQKTLADHLKVSSQQIQKYETGLNRVSAGRLKEIADILSVPIA 74 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 FF+ T + S + L + F ++ K ++ I+ L+ Sbjct: 75 FFYADLFTKQDT----PTQHDEIASNREEYFLLKSFRELK-PKKQKAILWLI 121 >gi|160914687|ref|ZP_02076901.1| hypothetical protein EUBDOL_00694 [Eubacterium dolichum DSM 3991] gi|158433227|gb|EDP11516.1| hypothetical protein EUBDOL_00694 [Eubacterium dolichum DSM 3991] Length = 313 Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 4/115 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N V + + + IR R G+SQE++ L + Q + K+E ++ A L I+++L+ Sbjct: 14 NEVFLMLNENIRKYRKECGLSQEEMAVKLHVVRQTISKWETNLSVPDADMLVEIAKLLQV 73 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + D S + +E + + ++ + + R I+ L+ Sbjct: 74 SVEQLLDYSGKDSLSVDTELARLNEELAKHIKEERRLQLYH----QKRNLILYLL 124 >gi|159043268|ref|YP_001532062.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911028|gb|ABV92461.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 464 Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R LG++Q+ E LG++ + + E V ++ L +++ ++ Sbjct: 9 GAKLRETRTGLGLTQKLFAEKLGVSLPYLNQMENNNRPVSSTVLLALAQEFGFDVTQLST 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F TP L R + + + +EL R + ++ + Sbjct: 69 GEAERLVSDMREALADPVFGETPPPLADLRLAAS-NAPALARAFLELHRHYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|149203444|ref|ZP_01880414.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149143277|gb|EDM31316.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 465 Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 46/128 (35%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R LG++Q+ LG++ + + E V + + +++ ++ Sbjct: 9 GAKLRETRQRLGLTQKDFAGKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGFDVTELST 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F P L R + + + +EL + + ++ + Sbjct: 69 GDAERMVSDMREALADPVFGDDPPPLADLRLTAS-NAPALARAFLELHSAYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|148243675|ref|YP_001219915.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|148243717|ref|YP_001219957.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|146400238|gb|ABQ28773.1| transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] gi|146400280|gb|ABQ28815.1| transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] Length = 185 Score = 61.8 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 62/142 (43%), Gaps = 13/142 (9%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D ++G +I RR +G+S+ +L L + + + YE+G+ V + L +++ L Sbjct: 18 SLDAHIGGQITARRAEIGLSRRQLAMTLRVPVRGIAAYERGIQHVAPADLFRLAQALGVD 77 Query: 70 ISFFFDVSPTVCSDISSEE-------------NNVMDFISTPDGLQLNRYFIQIDDVKVR 116 +++F+ S + +E +D D Q+ F +I + +R Sbjct: 78 LAYFYTDSASSPQAPKAETGCPVGGRAAGGVGQAAVDMRQYDDIDQIADRFSRIRNPAIR 137 Query: 117 QKIIELVRSIVSSEKKYRTIEE 138 + + ++ S+ E T+ + Sbjct: 138 RCVTRMLDSLAEHEVSSVTVGD 159 >gi|172041518|ref|YP_001801232.1| HTH family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171852822|emb|CAQ05798.1| putative transcriptional regulator (HTH_3 family) [Corynebacterium urealyticum DSM 7109] Length = 514 Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 54/140 (38%), Gaps = 17/140 (12%) Query: 6 KIPNPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + P+ + VG R+R R +SQ +L LG++ V + E + + LQ I+ Sbjct: 25 RTPDETNRNFVGSRLRQLRKERDISQAQLATTLGLSASYVNQIEHDQRPLTLAVLQKITR 84 Query: 65 VLESPISFFFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +FF + D+ ++ + + + +L R+ I Sbjct: 85 AFGVDATFFANEDSLRLLAEVQDVMADRDIWPTPVDVTELAELVRHHPAI---------- 134 Query: 121 ELVRSIVSSEKKYRTIEEEC 140 R++V +YR + ++ Sbjct: 135 --ARAMVDMHSRYRNVSDKL 152 >gi|315659344|ref|ZP_07912208.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590] gi|315495769|gb|EFU84100.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590] Length = 112 Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 5/97 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I+ R G++Q++L L T Q V K+E+G A + +++++ + Sbjct: 1 MKLAEQIKKYRKEQGLTQDQLAAELHTTRQTVSKWEQGSIEPNAQMIVNLAQMFDITTDE 60 Query: 73 FFDVSP-----TVCSDISSEENNVMDFISTPDGLQLN 104 ++ +E N DF+S L Sbjct: 61 LLTGENMSNFTKELNETGTEHLNFWDFLSQKWWFVLA 97 >gi|332653080|ref|ZP_08418825.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518226|gb|EGJ47829.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 208 Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 38/87 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G+ ++ R G+SQE + L ++ Q + K+E G L+ ++++ E + Sbjct: 16 IDMTLGENLQRLRKEKGLSQEDVARALFVSRQTISKWETDKAEPGVDNLKALADLYEVTL 75 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST 97 + T S E D T Sbjct: 76 DQLTGRARTGTDSKESHEQTPSDQYRT 102 >gi|289705735|ref|ZP_06502119.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] gi|289557575|gb|EFD50882.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] Length = 476 Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 3/129 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R G++ ++L E G++ + E S +Q I+EVL P+ Sbjct: 4 VALGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENARREPRLSLVQRIAEVLGVPVED 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVRQKIIELVRSIVSSE 130 E L L R + +V + I L + Sbjct: 64 LLTGRAPTRRAELEIEVERFARSEHYASLGLPPLRIGPRTPT-EVLEVIAGLEAELRRRL 122 Query: 131 KKYRTIEEE 139 ++ EE Sbjct: 123 EEQAATPEE 131 >gi|260430989|ref|ZP_05784960.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260414817|gb|EEX08076.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 466 Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 46/128 (35%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L ++Q++ LG++ + + E + + + +++ ++ Sbjct: 9 GAKLREMRTRLSLTQKEFAAKLGVSLPYLNQMENNNRPISTTVVLALAQEFGMDVTELST 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F L R + + + IEL ++ + ++ + Sbjct: 69 GDSERLVSDMREALADPVFADAIPPLADLRLTAS-NAPALARAFIELHKAYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|307544496|ref|YP_003896975.1| XRE family transcriptional regulator [Halomonas elongata DSM 2581] gi|307216520|emb|CBV41790.1| transcriptional regulator, XRE family [Halomonas elongata DSM 2581] Length = 195 Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 4/106 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + VG R+R R + G+SQ +L + G+T + E+G S L+ Sbjct: 7 MTEEDPMADD----VGARLRALRNLRGISQRELAKRCGVTHSSLSLIEQGKVSPSVSSLK 62 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 I + + + FF + + + + D + +L Sbjct: 63 KILDAIPMSVGDFFTMDLESRDQVFYSADELADVGAGDVVYKLVGA 108 >gi|239916764|ref|YP_002956322.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] gi|281414779|ref|ZP_06246521.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] gi|239837971|gb|ACS29768.1| predicted transcriptional regulator [Micrococcus luteus NCTC 2665] Length = 488 Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 3/129 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R G++ ++L E G++ + E S +Q I+EVL P+ Sbjct: 16 VALGRRVRHLRKQAGLTLDQLAERTGVSGSHLSLVENARREPRLSLVQRIAEVLGVPVED 75 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVRQKIIELVRSIVSSE 130 E L L R + +V + I L + Sbjct: 76 LLTGRAPTRRAELEIEVERFARSEHYASLGLPPLRIGPRTPT-EVLEVIAGLEAELRRRL 134 Query: 131 KKYRTIEEE 139 ++ EE Sbjct: 135 EEQAATPEE 143 >gi|156936184|ref|YP_001440100.1| hypothetical protein ESA_04083 [Cronobacter sakazakii ATCC BAA-894] gi|46093560|dbj|BAD14974.1| hypothetical protein [Escherichia coli] gi|156534438|gb|ABU79264.1| hypothetical protein ESA_04083 [Cronobacter sakazakii ATCC BAA-894] Length = 125 Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 7/118 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + D VG+RI++RR LG++ + L E + I+ QQ+ +YE+G N++ + L +I+ L + Sbjct: 7 DSADKQVGQRIQMRRKELGITAQHLAELVDISHQQLSRYERGTNKINVAHLVNIAIKLNT 66 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI---DDVKVRQKIIELV 123 PIS+FF S + +E N DF+ D L F QI + R+ +I L+ Sbjct: 67 PISWFF---IDCFSTLDNESKNQQDFVPVKDA-DLKNRFDQIWPRLTHEQRRVLIMLL 120 >gi|268589692|ref|ZP_06123913.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291315003|gb|EFE55456.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 103 Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 49/85 (57%), Gaps = 2/85 (2%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +DI+ +G +I+ RR LG+S L + L ++ QQ+ +YE G+N++ + L I+E L Sbjct: 1 MDIHTIIGIKIKNRRKELGLSGANLADKLNLSQQQISRYENGINKIPINHLVDIAEALNC 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMD 93 PI +FF + +E +N ++ Sbjct: 61 PIEWFFQGYVSNSKSNKNEPSNELN 85 >gi|210635071|ref|ZP_03298410.1| hypothetical protein COLSTE_02340 [Collinsella stercoris DSM 13279] gi|210158511|gb|EEA89482.1| hypothetical protein COLSTE_02340 [Collinsella stercoris DSM 13279] Length = 226 Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 38/101 (37%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V + +G RIR R I GMSQ+ L + ++ Q + +E G L +SE+ + + Sbjct: 16 VGMKIGGRIRELRAIHGMSQDDLAARVYVSRQTISSWENGKTYPDVQSLLLLSEIFGASV 75 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 ++ + M ++ L + Sbjct: 76 DSLIKGDVNAMNETIDRDAKTMKRLTYAMFAFLLLMIAALA 116 >gi|119964507|ref|YP_946525.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119951366|gb|ABM10277.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 495 Score = 61.4 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 3/129 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G+R+R R G++ + L +G Q+ E LQ ++ L I Sbjct: 25 ISLGRRVRHLRKQAGLTLDDLSAAVGTAPSQLSLIENAKREPKLGLLQQLAASLNVTIDQ 84 Query: 73 FFDVSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 P E + L R ++ V + + L++ + Sbjct: 85 LLGAEPPSRRAALEIELERYQRGPLYESLNLPKIRISSRLPLD-VLESQVGLLQELERKL 143 Query: 131 KKYRTIEEE 139 + EE Sbjct: 144 NEQVATPEE 152 >gi|260855310|ref|YP_003229201.1| putative phage repressor CI [Escherichia coli O26:H11 str. 11368] gi|260868064|ref|YP_003234466.1| putative phage repressor protein CI [Escherichia coli O111:H- str. 11128] gi|293405073|ref|ZP_06649065.1| transcriptional repressor DicA [Escherichia coli FVEC1412] gi|298380719|ref|ZP_06990318.1| transcriptional repressor DicA [Escherichia coli FVEC1302] gi|331652950|ref|ZP_08353955.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli M718] gi|331683077|ref|ZP_08383678.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli H299] gi|257753959|dbj|BAI25461.1| predicted phage repressor CI [Escherichia coli O26:H11 str. 11368] gi|257764420|dbj|BAI35915.1| predicted phage repressor protein CI [Escherichia coli O111:H- str. 11128] gi|291427281|gb|EFF00308.1| transcriptional repressor DicA [Escherichia coli FVEC1412] gi|298278161|gb|EFI19675.1| transcriptional repressor DicA [Escherichia coli FVEC1302] gi|320646852|gb|EFX15716.1| transcriptional repressor DicA [Escherichia coli O157:H- str. 493-89] gi|320663403|gb|EFX30700.1| transcriptional repressor DicA [Escherichia coli O55:H7 str. USDA 5905] gi|331049048|gb|EGI21120.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli M718] gi|331079292|gb|EGI50489.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli H299] Length = 135 Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 48/108 (44%), Gaps = 2/108 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR RR +G+SQ L + G++ + +E L ++EVL+ ++ Sbjct: 6 LGQRIRERRKQVGLSQNGLSKAAGVSGSSISLWESDHTAPRGQNLHRLAEVLQCSPTWIL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++ +D + D L++ R + + + + ++ EL Sbjct: 66 FGDEDKTPAPPVSLDSALDL--SEDELEMLRLYRALPKSEQQAQLSEL 111 >gi|85704680|ref|ZP_01035782.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85671088|gb|EAQ25947.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 465 Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 46/128 (35%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R LG++Q+ LG++ + + E + + + +++ ++ Sbjct: 9 GAKLRETRQRLGLTQKDFAGKLGVSLPYLNQMENNNRPLSTTVVLALAQEFGFDVTELST 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F P L R + + + +EL + + ++ + Sbjct: 69 GDAERMVSDMREALADPVFGDDPPPLADLRLTAS-NAPALARAFLELHSAYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|116669150|ref|YP_830083.1| transcriptional regulator [Arthrobacter sp. FB24] gi|116609259|gb|ABK01983.1| transcriptional regulator [Arthrobacter sp. FB24] Length = 495 Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 42/129 (32%), Gaps = 3/129 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G+R+R R M+ + L +G Q+ E G LQ ++ L I Sbjct: 25 ISLGRRVRHLRKAAAMTLDDLSAAVGTAPSQLSLIENGKREPKLGLLQQLAAALNVSIDQ 84 Query: 73 FFDVSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 P E + L R ++ + V + ++ L + Sbjct: 85 LLGAEPPNRRAALEIELERYQRSPLYESLNLPKIRISSRLP-MDVLESMVGLQHELERRL 143 Query: 131 KKYRTIEEE 139 + EE Sbjct: 144 NEQVATPEE 152 >gi|312141162|ref|YP_004008498.1| transcriptional regulator [Rhodococcus equi 103S] gi|325674016|ref|ZP_08153706.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|311890501|emb|CBH49819.1| putative transcriptional regulator [Rhodococcus equi 103S] gi|325555281|gb|EGD24953.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 469 Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 9/127 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L + L I+ + + E V + L ISEV +FF Sbjct: 5 FVGARLRQLRTERGLSQAALAKTLDISASYLNQIEHDVRPLTVPVLLRISEVFGVDTTFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D D ++ L +++V+ +++ Sbjct: 65 SSQDDTRLIAELREVALDKDMGIDADAQEIAEMVSSHP---------GLAKAMVNMHRRF 115 Query: 134 RTIEEEC 140 R + Sbjct: 116 RNTSAQL 122 >gi|291535748|emb|CBL08860.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Roseburia intestinalis M50/1] gi|291538243|emb|CBL11354.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Roseburia intestinalis XB6B4] Length = 334 Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 5/106 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L E L ++ Q V K+E + R+ +SE+ + Sbjct: 1 MILAEKIMEERKKNGWSQEELAEKLSVSRQAVSKWESAQSIPDLQRVIQLSEIFGVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I E + DF ++ F+ +VR+K Sbjct: 61 LLKDECETPQPIEGVEPSDKDFPLKKVSVEDANDFM-----EVRKK 101 >gi|154499775|ref|ZP_02037813.1| hypothetical protein BACCAP_03432 [Bacteroides capillosus ATCC 29799] gi|150271373|gb|EDM98630.1| hypothetical protein BACCAP_03432 [Bacteroides capillosus ATCC 29799] Length = 267 Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 41/98 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G+SQE L E + +T Q + K+E G + + +S++ + Sbjct: 1 MTLGEKIQKLRKQRGLSQEALAEKVTVTRQTISKWELGQSLPDLDFIAQLSDIFNVSSDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 T ++ ++ N + + + + Sbjct: 61 LIKDEMTEPDELPYKKRNYRLSERSKRIILVIVSAAAL 98 >gi|218290870|ref|ZP_03494934.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239137|gb|EED06339.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 161 Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 9/130 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+RL R + +QE+ G L ++ V YE GV A L I+++ + + + Sbjct: 9 SRLRLLRQMKNWTQEEFGRKLNVSKVTVSSYESGVRTPDAKTLIKIADLFDVSVDYLLGR 68 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK--KYR 134 + +SE + + D +L F + + + +++L R + + Sbjct: 69 TDGKNEGYTSEV------LVSEDEKELLERFRNLSENDA-KVLLQLARVLERRGQISDEL 121 Query: 135 TIEEECMVEQ 144 + + + EQ Sbjct: 122 SPVTQIITEQ 131 >gi|254390935|ref|ZP_05006145.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294816563|ref|ZP_06775205.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326445482|ref|ZP_08220216.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197704632|gb|EDY50444.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294321378|gb|EFG03513.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 480 Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 1/120 (0%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R GM+Q ++ L I+ + E+ + A L I+EV +F + Sbjct: 14 AKLRRLRREHGMNQVEMARALAISTSYANQLEQSQRPLTAPVLLRIAEVFGVDPEYFSEA 73 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + G + + D +V + ++ L R + ++ + Sbjct: 74 DEDRLATDLRAALADEACGAELPGAEEINEAAR-DHPEVARALVALHRRYRDTVERATAL 132 >gi|331087042|ref|ZP_08336117.1| hypothetical protein HMPREF0987_02420 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409492|gb|EGG88935.1| hypothetical protein HMPREF0987_02420 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 296 Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 16/124 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I+ R MSQE+L L + Q V K+E ++ A L ++EVL ++ Sbjct: 1 MLGDQIKKYRKEKKMSQEELAIPLNVVRQTVSKWENNLSVPDAELLIRLAEVLGISVAEL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 S+ S E ++L R + ++ +++ E RS+ S ++ Sbjct: 61 LGTDEQPHSESLSAET---------LAIELARL-----NEELAKQVQE--RSLSSRAEQK 104 Query: 134 RTIE 137 R + Sbjct: 105 RNLI 108 >gi|325663518|ref|ZP_08151928.1| hypothetical protein HMPREF0490_02669 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470417|gb|EGC73648.1| hypothetical protein HMPREF0490_02669 [Lachnospiraceae bacterium 4_1_37FAA] Length = 296 Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 53/124 (42%), Gaps = 16/124 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I+ R MSQE+L L + Q V K+E ++ A L ++EVL ++ Sbjct: 1 MLGDQIKKYRKEKKMSQEELAIPLNVVRQTVSKWENNLSVPDAELLIRLAEVLGISVAEL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 S+ S E ++L R + ++ +++ E RS+ S ++ Sbjct: 61 LGTDEQPHSESLSAET---------LAIELARL-----NEELAKQVQE--RSLSSRAEQK 104 Query: 134 RTIE 137 R + Sbjct: 105 RNLI 108 >gi|299136447|ref|ZP_07029630.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] gi|298600962|gb|EFI57117.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] Length = 137 Score = 61.0 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P IN+G IR R+ GMSQ + + G+ + + E G LQ I+ L+ Sbjct: 16 PGPAPINIGMTIRDFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLQKIAAALD 75 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 P+S FF S + + + F++ + + R+ ++ +VR Sbjct: 76 LPLSQFFAEDSVKDVPGISLKEDEIRFLTQ------VQRYSSNLGESDRRLLLAMVRKFA 129 Query: 128 SS 129 ++ Sbjct: 130 AT 131 >gi|294633078|ref|ZP_06711637.1| DNA-binding protein [Streptomyces sp. e14] gi|292830859|gb|EFF89209.1| DNA-binding protein [Streptomyces sp. e14] Length = 482 Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 51/121 (42%), Gaps = 3/121 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD- 75 ++R R GM+Q ++ LGI+ + E+ + A+ L I+EV FF + Sbjct: 14 AKLRRLRREHGMNQVEMARALGISTSYANQIEQSRRPLTATVLLRIAEVFGVDPEFFSEA 73 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + +++ + + +PD +L D ++ + ++ L R + ++ Sbjct: 74 DQDRLAAELRTALADEACGAPSPDPRELAEAVR--DHPELARALVALHRRYRDTAEQAAA 131 Query: 136 I 136 + Sbjct: 132 L 132 >gi|258651242|ref|YP_003200398.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554467|gb|ACV77409.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 504 Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 5/135 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+P+ +G+R+R R G++ + E GI+ + +E G S L ++ VL Sbjct: 30 APDPL--TIGRRLRHLRKAAGLTLSDVAEAAGISPSALSLFENGKREAKLSLLTTLAGVL 87 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVRQKIIELVR 124 + + V+P E S L++ + ++ + + ++ L R Sbjct: 88 GTDLGELLAVAPPSRRAALEIELERAQRSSGFKSLEIAAVKPGPRLQTEAL-ESLVGLHR 146 Query: 125 SIVSSEKKYRTIEEE 139 ++ + + + E+ Sbjct: 147 ALARIQAERQATPEQ 161 >gi|291087102|ref|ZP_06345414.2| DNA-binding protein [Clostridium sp. M62/1] gi|291076197|gb|EFE13561.1| DNA-binding protein [Clostridium sp. M62/1] Length = 237 Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++QE++ E LG++ Q + +E + + +SE + + + Sbjct: 24 IGSKIKAARLEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLL 83 Query: 75 DVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQI 110 + + D E NV+ + + + ++ I Sbjct: 84 KGEQKMKTYYDYLEESTNVVKSNANRNKIITILSYLLI 121 >gi|154500021|ref|ZP_02038059.1| hypothetical protein BACCAP_03679 [Bacteroides capillosus ATCC 29799] gi|150271619|gb|EDM98876.1| hypothetical protein BACCAP_03679 [Bacteroides capillosus ATCC 29799] Length = 296 Score = 61.0 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K I+ R GMSQE++ L + Q V K+E G++ A L ++E+L +S Sbjct: 3 MIDKNIKHFRKAKGMSQEEMAVKLNVVRQTVSKWENGLSVPDADVLIRMAELLNVSVSQL 62 Query: 74 F--DVSPTVCSDISSEENNVMDFISTPDGLQ 102 + D+S + + + + ++ + + Sbjct: 63 LGIEAEDKSDKDLSEKLSKLNEQLAKKNQKE 93 >gi|222056285|ref|YP_002538647.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221565574|gb|ACM21546.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 126 Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 10/135 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K + + +G IR RR L +SQE+L L +++QQ+Q+YE G N++ +Q Sbjct: 1 MSLEKIMSSS---EIGAAIRRRRHELSLSQEELAARLEVSYQQIQRYESGKNKLNVENIQ 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +++ L P+ +FF V S+ E P +L F I D +++ +I Sbjct: 58 LVADALSVPVGYFFQVVHQETVIESTIEQPC------PKEQELLAQFRSIRDDQMKTLVI 111 Query: 121 ELVRSIVSSEKKYRT 135 L R + + K+ R Sbjct: 112 NLSR-LAAQGKEARH 125 >gi|209965957|ref|YP_002298872.1| hypothetical protein RC1_2685 [Rhodospirillum centenum SW] gi|209959423|gb|ACJ00060.1| conserved hypothetical protein [Rhodospirillum centenum SW] Length = 480 Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 52/138 (37%), Gaps = 8/138 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K + +G ++R R L ++Q ++ + LGI+ + E + L Sbjct: 1 MTEKKAM-------LGHKVRRLRRDLKLTQAQMADELGISPSYLNLIESNQRPLTVPLLL 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I ++ + +S F + T E F ++ Q + + + Q ++ Sbjct: 54 KIGQIYDVDLSTFAETDETRLVAGLKEVFADPLFETSDIKNQDMKELAAVA-PTLGQAVV 112 Query: 121 ELVRSIVSSEKKYRTIEE 138 +L R+ + + + E Sbjct: 113 QLYRAYREARQDLSVLAE 130 >gi|48697234|ref|YP_024964.1| putative prophage repressor protein [Burkholderia phage BcepC6B] gi|47779040|gb|AAT38403.1| putative prophage repressor protein [Burkholderia phage BcepC6B] Length = 244 Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 37/76 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G RIR R G++ ++L + GI+ V ++E G ++ A++L +++ L + + + Sbjct: 6 HIGTRIRELRKAKGLTLQQLADVFGISRASVSEWESGRSKPDANKLVLLAKELHTAVEYL 65 Query: 74 FDVSPTVCSDISSEEN 89 + + Sbjct: 66 LNGDTNDAMSFADSAA 81 >gi|83594727|ref|YP_428479.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577641|gb|ABC24192.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 180 Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats. Identities = 48/144 (33%), Positives = 79/144 (54%), Gaps = 13/144 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+P+D VG+R+RLRR +LG+SQ++L + +GITFQQVQKYE+GVNR+ +SRL + +L Sbjct: 16 NPDPLDKEVGRRLRLRRKLLGLSQQQLADAVGITFQQVQKYERGVNRLSSSRLWDFATIL 75 Query: 67 ESPISFFFDVSPT------------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +SFFF+ D + + D + + L+L F + Sbjct: 76 GVSVSFFFEDLEAADVDRTIPRARRDAQDETITQTTAEDPLVRTETLELCYAFWA-TTPR 134 Query: 115 VRQKIIELVRSIVSSEKKYRTIEE 138 VR++ ++ +++ + EK E Sbjct: 135 VRKRYLDFLKTAATLEKPLYEAPE 158 >gi|240147061|ref|ZP_04745662.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82] gi|257200784|gb|EEU99068.1| putative helix-turn-helix protein [Roseburia intestinalis L1-82] Length = 334 Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 41/98 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L E L ++ Q V K+E + R+ +SE+L + Sbjct: 1 MILAEKIMEERKKNGWSQEELAEKLSVSRQAVSKWESAQSIPDLQRVIQLSEILGVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 I E + DF ++ F++I Sbjct: 61 LLKDECETPQLIEGVEPSNKDFPLKKVSMEEANDFMEI 98 >gi|312865414|ref|ZP_07725641.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098932|gb|EFQ57149.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 193 Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 43/82 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R+ G++QE + + L +T Q V ++E+ N LQ +S++ E +++ Sbjct: 1 MKIGERLRQARINAGLTQEDVSKELFVTRQTVSRWEQEKNLPNLYVLQDLSKLYEVEVAY 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 F ++ S+ N F Sbjct: 61 FLTKEVENQTEKKSQINFYALF 82 >gi|154247535|ref|YP_001418493.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154161620|gb|ABS68836.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 130 Score = 60.6 bits (145), Expect = 6e-08, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 5/129 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K +D+ +G R++ R+ G+SQE LGE LGITFQQ+QKYE G NR+ S L Sbjct: 1 MPTLKDKTKELDVVIGFRVKQSRLRSGVSQEALGEHLGITFQQIQKYENGKNRIACSTLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I++ L+ F + + + ++ + + L I Sbjct: 61 MIADFLKVSALFLLRGTEKDAGALPQARDT-----ASVEAVDLLSQLPPHSKAAAINTIR 115 Query: 121 ELVRSIVSS 129 L + + Sbjct: 116 ALHEATAGA 124 >gi|254510337|ref|ZP_05122404.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221534048|gb|EEE37036.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 466 Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 46/128 (35%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L ++Q+ LGI+ + + E + + + +++ ++ Sbjct: 9 GAKLREMRTRLTLTQKDFATKLGISLPYLNQMENNNRPISTTVVLALAQEFGMDVTELST 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F T L R + + + IEL R+ + ++ + Sbjct: 69 GDSERLVSDMREALADPVFADTMPPLADLRLTAS-NAPALARAFIELHRTYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|296269837|ref|YP_003652469.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092624|gb|ADG88576.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 490 Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 3/126 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R G++ L E +G Q+ E G S L+ ++ L P+ Sbjct: 22 GQRLKHLRKQRGLTLADLAERVGRAPSQLSLLENGKREPKLSLLKSLATALNVPVEELLR 81 Query: 76 VSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 E D + GL + ++ + +V + I+ L + + + + Sbjct: 82 RQAPNRRAQLEIALEEAQRDPLYMRLGLSKLKVSARVPN-EVLEHILALYGELKARQARG 140 Query: 134 RTIEEE 139 EE Sbjct: 141 TATPEE 146 >gi|170743390|ref|YP_001772045.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197664|gb|ACA19611.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 149 Score = 60.6 bits (145), Expect = 7e-08, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 9/128 (7%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + D ++G+RI R+ + ++ + LGI+ Q KYEKG NR+ A+ L + + Sbjct: 4 KPADARDAHIGQRIEQLRLKAKIPRDVVAGRLGISASQFGKYEKGANRMSAADLDAVGRL 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ-------LNRYFIQIDDVKVRQK 118 + PI +FF+ P ++ + + D R++ Sbjct: 64 FDVPIGYFFEGMPRDEGTGPGLRERPQPPLAGAESWTGFAGAVARAADAHLLTDD--RRR 121 Query: 119 IIELVRSI 126 + +VR++ Sbjct: 122 LAAVVRAL 129 >gi|226328868|ref|ZP_03804386.1| hypothetical protein PROPEN_02769 [Proteus penneri ATCC 35198] gi|225202054|gb|EEG84408.1| hypothetical protein PROPEN_02769 [Proteus penneri ATCC 35198] Length = 112 Score = 60.6 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 45/76 (59%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ V+ VGKRI+ +R LG + ++ + +G++ QQ +YE+G+N++ S L Sbjct: 7 MMNYDFTDINVNALVGKRIQKKRKELGYTGMQIAKKIGVSQQQFSRYERGMNKIDLSYLV 66 Query: 61 HISEVLESPISFFFDV 76 ++ L +PI +FF+ Sbjct: 67 LLANYLNTPIYWFFED 82 >gi|288962006|ref|YP_003452316.1| transcriptional regulator [Azospirillum sp. B510] gi|288914286|dbj|BAI75772.1| transcriptional regulator [Azospirillum sp. B510] Length = 486 Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 49/128 (38%), Gaps = 1/128 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R R G++Q L + L ++ + + E + L I+ E +S Sbjct: 5 LFLGYKLRRLREQRGLTQASLAKTLELSPSYLNQLENNQRPLTLPVLMRIAATFELELSA 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F + + E F P R + ++ ++++ L ++ ++ Sbjct: 65 FLEDEDSRLVSDLREALADPLFAGAPLTSGELRSVVG-ASPELARRVLSLHQAYQKLHER 123 Query: 133 YRTIEEEC 140 +++ + Sbjct: 124 VQSLADSL 131 >gi|42520148|ref|NP_966063.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409885|gb|AAS13997.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 308 Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 10/129 (7%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D VG++++ R+ G +Q+ L E +G+ + + +YEKG + RL I+E L Sbjct: 8 SLDCKVGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRGISIKRLYAIAEALSVS 67 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I+ S + E L L R + +I+D ++R+ L + + S Sbjct: 68 ITNLIPASKEKIGFKNEEGE----------ILNLVREYKKINDHELRRMFCLLTKFVQVS 117 Query: 130 EKKYRTIEE 138 EK R E+ Sbjct: 118 EKSSRKSEK 126 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 14/130 (10%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GK+I+ R++ +Q+ LGE + T +V YE+G V +L ++E L Sbjct: 161 SIYYKIGKKIKEWRLVREYTQKDLGEKMSTTRHEVSNYEQGRTAVPLDKLYEMAEALSIN 220 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVS 128 I+ + N L + + +I+ ++R +I+ L I Sbjct: 221 ITDLLIEKDEGSRVENELPN-------------LIKEYKEIESQELRNALIKSLFEGIRI 267 Query: 129 SEKKYRTIEE 138 E+K R IE Sbjct: 268 CEEKVREIER 277 >gi|297560394|ref|YP_003679368.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844842|gb|ADH66862.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 490 Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 3/126 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R G++ LGE +G Q+ E G S L ++ L + Sbjct: 22 GQRLRHLRRARGLTLSDLGERVGRAPSQLSLLENGKREPKLSLLTSLASALGVSVEELLS 81 Query: 76 VSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 P E D + L R ++ + V + I+ L + K Sbjct: 82 KQPPSRRAQLEIAVEEAQRDTLYQDLNLPHLRIGKRVPND-VLEHIVGLYGELRRRSAKP 140 Query: 134 RTIEEE 139 EE Sbjct: 141 TATPEE 146 >gi|227357946|ref|ZP_03842289.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|6453635|emb|CAB61440.1| mrpJ [Proteus mirabilis HI4320] gi|227161855|gb|EEI46884.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 107 Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 1 MVGNKKIPN-PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+ N N V+ +VGK+I+ +R LG + +L + +G++ QQ +YE+G+N++ L Sbjct: 1 MMMNFDFANIDVNASVGKKIQKKRKELGYTGMQLAKKIGVSQQQFSRYERGMNKIDLRHL 60 Query: 60 QHISEVLESPISFFFDV 76 ++ L +PI +FF+ Sbjct: 61 VLLALYLNTPIYWFFED 77 >gi|254474388|ref|ZP_05087774.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214028631|gb|EEB69466.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 462 Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 46/128 (35%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L ++Q++ LG++ + + E V + + +++ ++ Sbjct: 9 GAKLREMRTRLSLTQKEFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELST 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F S + R + + + + L R+ + ++ + Sbjct: 69 GDSERLVSDMREVMADPVFASDAPPMADLRLTAS-NAPALARAFLTLHRAYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|308176134|ref|YP_003915540.1| transcriptional regulator [Arthrobacter arilaitensis Re117] gi|307743597|emb|CBT74569.1| putative transcriptional regulator [Arthrobacter arilaitensis Re117] Length = 487 Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 42/129 (32%), Gaps = 3/129 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+RIR R ++ + + + Q+ E G S L+ ++ L + Sbjct: 18 IALGRRIRFLRKSKQLTLDDVSTLVDTAPSQLSLIENGKREPKLSLLKSLAGALGVGVDD 77 Query: 73 FFDVSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 P E + GL R ++ + V + ++ L + Sbjct: 78 LLGTEPPSRRAALEIELERAQRGPLYESLGLPTVRVGTRLP-MDVLESLVGLQHELERRL 136 Query: 131 KKYRTIEEE 139 + EE Sbjct: 137 NEQAATPEE 145 >gi|240948468|ref|ZP_04752844.1| transcription regulator [Actinobacillus minor NM305] gi|240297209|gb|EER47771.1| transcription regulator [Actinobacillus minor NM305] Length = 239 Score = 60.2 bits (144), Expect = 8e-08, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 8/115 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K + +G RIR +R LG+S+ ++ + L ++ +Q +E AS + Sbjct: 1 MTEKFKNKS----MIGNRIREQREKLGLSRNEMADRLDVSLSALQNWEMNEREPQASMII 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFI----STPDGLQLNRYFIQID 111 I+E L ++ + + + + + D +++ F I+ Sbjct: 57 KIAEFLGVAPNYLLTGEQSQPQEAKGIVARAFEALEKERTEQDEVEMLSSFESIE 111 >gi|261885710|ref|ZP_06009749.1| hypothetical protein CfetvA_11544 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 207 Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +IR R G+SQ++ + GI + +Q YE G+ + ++ +++ + +++F Sbjct: 1 MIGNKIRALREENGISQKEFAKEFGIAYGTLQSYEYGLTKPKTDFIEQLAKKFKIDVNYF 60 Query: 74 FDV 76 +D Sbjct: 61 YDD 63 >gi|163869151|ref|YP_001610391.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018838|emb|CAK02396.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 121 Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRLRR +L MSQ LG LG++FQQ+QKYEKG+NRV A RL IS++L I Sbjct: 8 IDLFVGKKIRLRRQMLKMSQTTLGHALGVSFQQIQKYEKGLNRVSAGRLMQISDILNVSI 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 SFF+ T ++ + IS + L + F + +K R I++L+ Sbjct: 68 SFFYADIITKQQP----PHHHDEVISNTEEYLLLKRFRTLTSIKQR-AILQLI 115 >gi|268611043|ref|ZP_06144770.1| transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 78 Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKRI+ R ++Q +L E L ++ V KYE G R+ I+++ + + + Sbjct: 10 GKRIKALRKKNNLTQCQLAELLHMSRSTVLKYETGRQIPPVDRICDIADIFDVSTDYLYG 69 Query: 76 VSP 78 VS Sbjct: 70 VSD 72 >gi|258543105|ref|YP_003188538.1| XRE family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256634183|dbj|BAI00159.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-01] gi|256637243|dbj|BAI03212.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-03] gi|256640295|dbj|BAI06257.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-07] gi|256643352|dbj|BAI09307.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-22] gi|256646407|dbj|BAI12355.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-26] gi|256649460|dbj|BAI15401.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-32] gi|256652446|dbj|BAI18380.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655504|dbj|BAI21431.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-12] Length = 138 Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 42/68 (61%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G RIR RR L MS E+LG +G T+QQ+QKYE G N + A+ L + L+ P++ Sbjct: 71 DKRLGFRIRQRRHELHMSLEQLGHAIGCTYQQMQKYETGKNAIKATLLPTFATALDVPLT 130 Query: 72 FFFDVSPT 79 +FF+ Sbjct: 131 WFFEGLEA 138 >gi|227894470|ref|ZP_04012275.1| helix-turn-helix motif protein [Lactobacillus ultunensis DSM 16047] gi|227863629|gb|EEJ71050.1| helix-turn-helix motif protein [Lactobacillus ultunensis DSM 16047] Length = 325 Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 46/112 (41%), Gaps = 2/112 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE L E + ++ Q V K+E + ++ ++SE + Sbjct: 1 MRLGQKIADLRKKNNLSQEDLAEEMNVSRQAVSKWESDQSIPDIEKIVNLSEFFGVTTDY 60 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + +P+ + + D +Q F + K+R + LV Sbjct: 61 LLKNGTPSFEFKSEDIATEEKMPVLSDDLVQKY-LFAVKRNSKLRALVAALV 111 >gi|85704294|ref|ZP_01035397.1| hypothetical protein ROS217_14886 [Roseovarius sp. 217] gi|85671614|gb|EAQ26472.1| hypothetical protein ROS217_14886 [Roseovarius sp. 217] Length = 136 Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 4/126 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +D+ VG+ +R R+ G + L G+T QQ+QKYE G NRV SRL +S L Sbjct: 6 NDIDVIVGRVLRRTRLASGHTMTSLAAQCGVTHQQLQKYESGSNRVSVSRLFILSNALGI 65 Query: 69 PISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P + D + SD + + F ++ + D +V Q ++ L+ Sbjct: 66 PPAELIDQVQELLGRDRSDPVDSAWHRLQFAKPEHCRKIISGLASVRDTEVLQSVLNLLA 125 Query: 125 SIVSSE 130 + +E Sbjct: 126 VLDQNE 131 >gi|99081720|ref|YP_613874.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038000|gb|ABF64612.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 491 Score = 60.2 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 44/125 (35%), Gaps = 1/125 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R +G++Q+ LG++ + + E V + + +++ ++ Sbjct: 38 GAKLREMRNRIGLTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELSS 97 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F L R + + + + L R+ + ++ + Sbjct: 98 GDSERLISDMREAMADPVFADDVPPLADLRLTAS-NAPALARAFLSLHRAYRQTHERLAS 156 Query: 136 IEEEC 140 ++E Sbjct: 157 LDEAL 161 >gi|224541132|ref|ZP_03681671.1| hypothetical protein CATMIT_00283 [Catenibacterium mitsuokai DSM 15897] gi|224525941|gb|EEF95046.1| hypothetical protein CATMIT_00283 [Catenibacterium mitsuokai DSM 15897] Length = 217 Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++QE++ E LG++ Q + +E + + +SE + + + Sbjct: 5 IGSKIKAARIGKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLL 64 Query: 75 DVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQI 110 + + D E NV+ + + + ++ I Sbjct: 65 KGEEKMKNYYDYLEESTNVVKSNANRNKIVTILSYLLI 102 >gi|260905597|ref|ZP_05913919.1| transcriptional regulator [Brevibacterium linens BL2] Length = 483 Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 51/127 (40%), Gaps = 4/127 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R G++ +LGE +G Q+ E G + L I++ L + ++ Sbjct: 20 IGRRIRFFRKQRGLTLTELGEQVGRAASQISTIENGKRETSVTLLSAIAKALHTEVAELI 79 Query: 75 DVSPTVCSDI--SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D +P E N + + GL R + + + I+ L R + ++ Sbjct: 80 DPTPVDGRQALELEAERNQASPMYSALGLPQVR-IKSLPHDAL-EAIVGLQRQLGQVLER 137 Query: 133 YRTIEEE 139 EE Sbjct: 138 RAATPEE 144 >gi|307265008|ref|ZP_07546569.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|306919993|gb|EFN50206.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] Length = 130 Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 8/125 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD-- 75 R++ R ++QE L + LGI+ + YE L+ I++ I + Sbjct: 6 RLKELRKEKNLTQEDLAKILGISRSTIAGYETERKEPDYETLKKIADFFNVSIDYLLGRT 65 Query: 76 ------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 T E + + + L+L + K ++II ++++I Sbjct: 66 DIRSPVDEITEAVSDDPELLEFWNELKDREDLKLLFKQTKKLSPKEIKQIIRIIKAIEEE 125 Query: 130 EKKYR 134 E K Sbjct: 126 EDKGE 130 >gi|260426951|ref|ZP_05780930.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260421443|gb|EEX14694.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 463 Score = 60.2 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 2/128 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R LG++Q+ LGI+ + + E V + + +++ ++ Sbjct: 9 GAKLRDLRGRLGLTQKDFAGKLGISLPYLNQMENNNRPVSTTVVLALAQEFGFDVTELGQ 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F P L + + +EL R+ + ++ + Sbjct: 69 GDSERLVTDMREALADPVFGEAPPLADLRLTASNA--PALARAFLELHRAYRQTHERLAS 126 Query: 136 IEEECMVE 143 ++E E Sbjct: 127 LDEALGRE 134 >gi|291288131|ref|YP_003504947.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290885291|gb|ADD68991.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 141 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 1/117 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R LG+SQ +LG+ L + Q + YEKG + + AS+L IS I + Sbjct: 23 MNIGIKIKELRAELGISQNELGQLLNVKQQVISYYEKG-DDIDASKLATISSEYNIDIRY 81 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 FF P + E N + P G I + K + + LVR+++ Sbjct: 82 FFSDKPLSYFRETFLEPNSASGVIIPFGWDDLLGEISCLNHKQLKILEALVRTLIKE 138 >gi|150020298|ref|YP_001305652.1| XRE family transcriptional regulator [Thermosipho melanesiensis BI429] gi|149792819|gb|ABR30267.1| transcriptional regulator, XRE family [Thermosipho melanesiensis BI429] Length = 244 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 43/97 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I+ R+ +SQE+L + LGI+ + + YE L+ I+++ +++ Sbjct: 1 MDLGEKIKQLRLERDISQEQLAKRLGISRESISHYENNRIVPPVHILREIAKIFNVSVNY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 FF+ + E + G + + Sbjct: 61 FFEEEHYDKNVKGESELVDYNIPQNFMGFMVVGSHSR 97 >gi|13487804|ref|NP_108682.1| cI2009 [Lactococcus phage Tuc2009] gi|509672|gb|AAA21825.1| cI2009 [Bacteriophage Tuc2009] Length = 286 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G+SQE+L + +G+ + YE G+ +L +SEV + I Sbjct: 6 INKYVGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAI 65 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST----PDGLQLNRYFIQIDDVKVRQK 118 FF + + ++SS + + S + LN Q+D+ +K Sbjct: 66 DDFFPQTDSTRMNVSSILSEINKISSQLEEPRQKIVLNTATNQLDEQNQEKK 117 >gi|227532834|ref|ZP_03962883.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189538|gb|EEI69605.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 185 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+++G R++ R GM+Q +L + L ++ + V +E G N+ + ++ + + Sbjct: 3 DLSLGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLTVD 62 Query: 72 FFF 74 Sbjct: 63 DLL 65 >gi|116496181|ref|YP_807915.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|239630630|ref|ZP_04673661.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067783|ref|YP_003789806.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|116106331|gb|ABJ71473.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] gi|239526913|gb|EEQ65914.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440190|gb|ADK19956.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 185 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+++G R++ R GM+Q +L + L ++ + V +E G N+ + ++ + + Sbjct: 3 DLSLGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLTVD 62 Query: 72 FFF 74 Sbjct: 63 DLL 65 >gi|45597387|ref|NP_996677.1| phage repressor [Lactococcus phage phiLC3] gi|21617869|gb|AAK07510.2|AF242738_1 phage repressor [Lactococcus phage phiLC3] Length = 286 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G+SQE+L + +G+ + YE G+ +L +SEV + I Sbjct: 6 INKYVGSKIKDYRKSFGLSQEELAKKIGVGKTTISNYEVGIRSPKKPQLIKLSEVFDVAI 65 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST----PDGLQLNRYFIQIDDVKVRQK 118 FF + + ++SS + + S + LN Q+D+ +K Sbjct: 66 DDFFPQTDSTRMNVSSILSEINKISSQLEEPRQKIVLNTATNQLDEQNQEKK 117 >gi|146300326|ref|YP_001194917.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154744|gb|ABQ05598.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 131 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 8/129 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+ I R + M QE L + LGIT Q + E V RL I++ L+ + Sbjct: 8 KHIGRNISRIRELKDMKQEALADALGITQQTISNIE-NSETVDEQRLIEIAKALDVSVEA 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + S +I +ST G + + K++EL +V +EK Sbjct: 67 IKNFSEEAVFNIIGNTIQDHGTLSTTTG-----NYNCTFNP--LDKVVELYERLVQAEKD 119 Query: 133 YRTIEEECM 141 E+ + Sbjct: 120 KVEYLEKLL 128 >gi|332980703|ref|YP_004462144.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698381|gb|AEE95322.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 130 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 51/123 (41%), Gaps = 7/123 (5%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R+ G+SQ+++ +G+ KYE G ++ +Q +++ + + S Sbjct: 7 IKQLRLEKGLSQKEIANAIGVDRTTYNKYETGKSQPDFDTVQKLADFFGVSVDYLLGRSD 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRY-----FIQIDD--VKVRQKIIELVRSIVSSEK 131 T SD+ E + + NR F +I D ++I++++ + + Sbjct: 67 TRNSDVIEEAIKDDPELERIWNMLNNREEVRVMFKKIADLKPADVKRILKIIEIVEEEDS 126 Query: 132 KYR 134 R Sbjct: 127 ASR 129 >gi|259416970|ref|ZP_05740890.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259348409|gb|EEW60186.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 462 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 44/125 (35%), Gaps = 1/125 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R +G++Q+ LG++ + + E V + + +++ ++ Sbjct: 9 GAKLREMRNRIGLTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELSS 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F L R + + + + L R+ + ++ + Sbjct: 69 GDSERLISDMREAMADPVFADDVPPLADLRLTAS-NAPALARAFLSLHRAYRQTHERLAS 127 Query: 136 IEEEC 140 ++E Sbjct: 128 LDEAL 132 >gi|260438757|ref|ZP_05792573.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] gi|292808744|gb|EFF67949.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] Length = 267 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 41/98 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G+SQE L E + +T Q + K+E G + + +S++ + Sbjct: 1 MTLGEKIQKLRKQRGLSQEALAEKVTVTRQTISKWELGQSLPDLDFIAQLSDIFSVSSDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 T ++ ++ N + + + + Sbjct: 61 LIKDEMTEPDELPYKKRNYRLSERSKRIILVIVSAAAL 98 >gi|154499861|ref|ZP_02037899.1| hypothetical protein BACCAP_03518 [Bacteroides capillosus ATCC 29799] gi|150271459|gb|EDM98716.1| hypothetical protein BACCAP_03518 [Bacteroides capillosus ATCC 29799] Length = 409 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 20/149 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI R G+SQE LGE +G++ Q V K+E + +S V ++ Sbjct: 1 MTLGQRIAALRKEKGLSQEGLGELVGVSRQAVSKWEADKTVPDVNNCIAMSRVFGISLAG 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR---------------- 116 +V ++ + + +++ ++R Sbjct: 61 LLEVEESLGDGAERTGGEQLSEEQLAMVEAVVTRYLEKRKRRIRPGPLILGGILVLTVVL 120 Query: 117 ----QKIIELVRSIVSSEKKYRTIEEECM 141 + + +L R + S ++ +E + + Sbjct: 121 LPAWEWLTQLERRMSSISREMEELEWKIV 149 >gi|291521732|emb|CBK80025.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 217 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++QE++ E LG++ Q + +E + + +SE + + + Sbjct: 5 IGCKIKEARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLL 64 Query: 75 DVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQI 110 + S D E NV+ + + + ++ I Sbjct: 65 KGERKMKSYYDYLEESTNVVKSNANRNKIITILSYLLI 102 >gi|188582745|ref|YP_001926190.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179346243|gb|ACB81655.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 135 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 7/137 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K + D+ +G+RI +R ++Q + + G++ Q+QKYEKGVNR+ A L Sbjct: 1 MAGQK--TDERDVLLGRRIAEQRKRSKLTQRAVADSFGMSAAQLQKYEKGVNRISAIHLA 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFI-----STPDGLQLNRYFIQIDDVKV 115 + + +PIS F D P + + + + R F++ Sbjct: 59 ILGRLTNTPISEFLDGIPHPDPETERGFSESGQQSYAVEPWSDLARAIARQFVETFSEDQ 118 Query: 116 RQKIIELVRSIVSSEKK 132 R+++ + + K Sbjct: 119 RRELSAAIEVLSRELKS 135 >gi|296127941|ref|YP_003635191.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296019756|gb|ADG72992.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 488 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 3/127 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R GM+ + LG +G QV E G S L ++E L + Sbjct: 19 LGRRVRHLRTARGMTLDDLGRAIGRAPSQVSMLENGHREPKLSLLAQVAEALGVELGDLL 78 Query: 75 DVSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 P E + G+ + + + + ++ L + + Sbjct: 79 STEPPTRRAALEVELERAQRGPLFASLGVPQVKVGRSLPSDAL-EALVALQEQVQRLLTE 137 Query: 133 YRTIEEE 139 EE Sbjct: 138 NAATPEE 144 >gi|218437353|ref|YP_002375682.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7424] gi|218170081|gb|ACK68814.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7424] Length = 377 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 8/116 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D + I+ R LG+SQ+ L + G++ Q + E G A+ +++ L + Sbjct: 4 DRELRNNIKQIRTRLGLSQQDLAQVAGVSRQAISGVESGQYAPSATVALRLAKALGCRVE 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR------YFIQIDDVKVRQKIIE 121 F + + I+ P L L + + I D R +II Sbjct: 64 DLFWLDNDET--MIEAFPTSTVPIAQPFRLTLAQVGSKLIAYPLIKDDAFRTEIIA 117 >gi|254465017|ref|ZP_05078428.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206685925|gb|EDZ46407.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 462 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 44/128 (34%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L ++Q+ LG++ + + E V + + +++ ++ Sbjct: 9 GAKLREMRQRLELTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGMDVTELSA 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F L R + + + + L R+ + ++ + Sbjct: 69 GDSERLVSDMREAMADPVFADDAPPLADLRLTAS-NAPALARAFLALHRAYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|154501006|ref|ZP_02039044.1| hypothetical protein BACCAP_04693 [Bacteroides capillosus ATCC 29799] gi|150270030|gb|EDM97549.1| hypothetical protein BACCAP_04693 [Bacteroides capillosus ATCC 29799] Length = 297 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 41/85 (48%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ G+ IR R GM+Q++L + L IT + V K+E+G+ S L+ ++E L + Sbjct: 3 NMKTGQLIRDLRKEKGMTQKELADKLHITDRAVSKWERGLCAPEISLLEPLAEALGCSVL 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFIS 96 T + S EE D + Sbjct: 63 DLMAGERTAKAADSQEEARTRDVLH 87 >gi|167039360|ref|YP_001662345.1| XRE family transcriptional regulator [Thermoanaerobacter sp. X514] gi|300913999|ref|ZP_07131316.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X561] gi|307725316|ref|YP_003905067.1| helix-turn-helix domain-containing protein [Thermoanaerobacter sp. X513] gi|166853600|gb|ABY92009.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X514] gi|300890684|gb|EFK85829.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X561] gi|307582377|gb|ADN55776.1| helix-turn-helix domain protein [Thermoanaerobacter sp. X513] Length = 137 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 8/126 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD- 75 +R+R R G+ Q+ + + LGIT YE+G L+ +S+ I + Sbjct: 12 QRLRQLREEKGLLQKDVAKILGITPSAYGYYEQGKREPSMEVLKKLSDFFNVSIDYLLGR 71 Query: 76 -------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 T E + + + L+L + + ++II ++++I Sbjct: 72 TDIRSPVDEITEAVSDDPELLEFWNELKEREDLKLLFKQTKKLSPREIKQIIRIIKAIEE 131 Query: 129 SEKKYR 134 E K Sbjct: 132 EEDKGE 137 >gi|257886598|ref|ZP_05666251.1| predicted protein [Enterococcus faecium 1,141,733] gi|257822652|gb|EEV49584.1| predicted protein [Enterococcus faecium 1,141,733] Length = 149 Score = 59.8 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R G +QE+L + L IT Q V +E G + + ++++ +S F Sbjct: 7 KKLKQLRKEHGHTQEELAKKLAITRQTVSNWENGRSFPDHENVYCLAKLYGQTLSIFLPD 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 P + + I L + F Sbjct: 67 LPEAPMKAEEISSERIQLIRFFICLLVVLSF 97 >gi|282852578|ref|ZP_06261920.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|282556320|gb|EFB61940.1| DNA-binding protein [Lactobacillus gasseri 224-1] Length = 334 Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 50/113 (44%), Gaps = 4/113 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE L E + ++ Q V K+E + ++ ++S++ + Sbjct: 1 MRLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSKLFGVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELV 123 S ++ +E+ N D + +L + ++ K+R I L+ Sbjct: 61 LL-KSGEPSFELKNEDINDKDKLPV-LSDELVKKYLAASQKSSKLRALAIALI 111 >gi|269794016|ref|YP_003313471.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269096201|gb|ACZ20637.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 489 Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 4/142 (2%) Query: 1 MVGNKKIPNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M + D+ +G+R+R R G++ E L E G+ Q+ + E G+ S L Sbjct: 1 MTERSERTTSTDLLTLGRRVRHFRTGAGLTLEDLAERTGVDTSQLSRIENGLREPRLSLL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++ L P++ +P E D GL R ++ V + Sbjct: 61 DAVAGALGVPVATLLASTPPTRRAGLEIELDRAQRDPFYPTLGLPPVRPSQRLPLP-VLE 119 Query: 118 KIIELVRSIVSSEKKYRTIEEE 139 ++ L R + + E Sbjct: 120 NLVGLHRELARRATQAVATPAE 141 >gi|237737130|ref|ZP_04567611.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] gi|229420992|gb|EEO36039.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] Length = 181 Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 1/101 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V++N G +I+L+R GM+QE+LGE L ++ Q + K+E + ++ +S + I Sbjct: 17 VNMNFGDKIQLQRKKKGMTQEELGEELNVSRQTITKWESNQSFPEIKKIIKLSYFFDVTI 76 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + D ++ E + ST L + + + Sbjct: 77 DYLLKDEIEDEERNVIKIEKEEKNIFSTKIKLLIIPLIVSL 117 >gi|116628909|ref|YP_814081.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|311111276|ref|ZP_07712673.1| putative transcriptional regulator [Lactobacillus gasseri MV-22] gi|116094491|gb|ABJ59643.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] gi|311066430|gb|EFQ46770.1| putative transcriptional regulator [Lactobacillus gasseri MV-22] Length = 334 Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 50/113 (44%), Gaps = 4/113 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE L E + ++ Q V K+E + ++ ++SE+ + Sbjct: 1 MRLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELV 123 S ++ +E+ N D + +L + ++ K+R I L+ Sbjct: 61 LL-KSGEPSFELKNEDINDKDKLPV-LSDELVKKYLAASQKSSKLRALAIALI 111 >gi|302672234|ref|YP_003832194.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396707|gb|ADL35612.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 374 Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++QEKL E L ++FQ + ++E G++ S + I+ + F Sbjct: 4 LGSKIKELRIAENLTQEKLAEELNVSFQSISRWENGISTPDISLIPAIARFFGVSTDYLF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ 102 + SE L Sbjct: 64 GLQDEESEAEKSELEAAYWDYRKEGNLD 91 >gi|167038623|ref|YP_001666201.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320117014|ref|YP_004187173.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857457|gb|ABY95865.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930105|gb|ADV80790.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 129 Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 8/125 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD-- 75 R++ R ++Q +L L ++ + YE G L+ I++ I + Sbjct: 5 RLKTLRNEKNLTQRELARLLNLSPSTIAMYETGQRFPDPETLKKIADFFNVSIDYLLGRT 64 Query: 76 ------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 T E + + + L+L + K ++II ++++I Sbjct: 65 DIRSPVDEITEAVSDDPELFEFWNTLKEREDLKLLFKQTKKLSPKDIKQIIRIIKAIEDE 124 Query: 130 EKKYR 134 E K Sbjct: 125 EDKGE 129 >gi|332798977|ref|YP_004460476.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696712|gb|AEE91169.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 131 Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 1/127 (0%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R G+SQ +L + L I+ + YE G + Q +++ P+ + VS Sbjct: 5 RIRKLRNDKGLSQRELAKMLKISPSTIAMYELGKREPDIAMFQRLADFFNVPVEYVMGVS 64 Query: 78 PTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 +E + + D K + ++ +R+ K+ R Sbjct: 65 DEPKPWWEKDEEPTDIELEEFIKNNSNIKLMGDPLDEKAKDDVLMFLRAAHQMIKEKRKA 124 Query: 137 EEECMVE 143 EEE E Sbjct: 125 EEEVGKE 131 >gi|289578606|ref|YP_003477233.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289528319|gb|ADD02671.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 129 Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 49/123 (39%), Gaps = 8/123 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 KR+ R G++Q++L + LG++ + YE G LQ +S++ + + Sbjct: 5 KRLATLRKEAGLTQKELADKLGVSRGTIGMYEIGQRDPDTETLQKLSDIFGVSVDYLLGK 64 Query: 75 ------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 T + E + + + L+L + K +++I ++++I Sbjct: 65 TDIRNPSDEITEAVEDDPELLEFWNELKQREDLKLLFKQTRKLSPKDIKQVIRIIKAIEE 124 Query: 129 SEK 131 E Sbjct: 125 EES 127 >gi|238852875|ref|ZP_04643280.1| transcriptional regulator, xre family [Lactobacillus gasseri 202-4] gi|238834569|gb|EEQ26801.1| transcriptional regulator, xre family [Lactobacillus gasseri 202-4] Length = 335 Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 4/113 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE L E + ++ Q V K+E + ++ ++SE+ + Sbjct: 1 MRLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELV 123 S + +E+ N D + +L R ++ + K R I L+ Sbjct: 61 LL-KSGEPSFEFKNEDINDKDKLPV-LSDELVRKYLTASRKNAKFRALAIALI 111 >gi|163869148|ref|YP_001610388.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018835|emb|CAK02393.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 121 Score = 59.4 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRLRR +L MSQ LG LG++FQQ+QKYEKG+NRV A RL IS++L PI Sbjct: 8 IDLLVGKKIRLRRQMLKMSQTTLGHALGVSFQQIQKYEKGLNRVSAGRLMQISDILNVPI 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 SFF+ T ++ + IS+ + L + F + +K R I+ L+ Sbjct: 68 SFFYADIITKQQP----PHHHDEVISSTEEYLLLKRFRTLTSIKQR-AILHLI 115 >gi|212711887|ref|ZP_03320015.1| hypothetical protein PROVALCAL_02962 [Providencia alcalifaciens DSM 30120] gi|212685409|gb|EEB44937.1| hypothetical protein PROVALCAL_02962 [Providencia alcalifaciens DSM 30120] Length = 103 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +DI+ +G RI+ RR LG+S L + L ++ QQ+ +YE GVN++ L ISE+L Sbjct: 1 MDIHSVIGLRIKNRRKELGLSGANLADRLHLSQQQISRYENGVNKIPIDHLLDISEILMC 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMD 93 PI +FF+ + + ++ + Sbjct: 61 PIEWFFNGYKSEIKNNDGLAFDIPN 85 >gi|121534819|ref|ZP_01666639.1| putative prophage repressor [Thermosinus carboxydivorans Nor1] gi|121306614|gb|EAX47536.1| putative prophage repressor [Thermosinus carboxydivorans Nor1] Length = 215 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 34/91 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ R G++Q+++ + LGI YE + L +++ + + Sbjct: 1 MLGERLKSLREQKGITQQEMADILGIARGTYAHYEIDRREPDNATLSRLADFFGVSVDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S + + +S + + Sbjct: 61 LGRDKPKPSITDLFPDAIPADLSNFVPIPIV 91 >gi|297242658|ref|ZP_06926596.1| hypothetical protein GVAMD_0670 [Gardnerella vaginalis AMD] gi|296888869|gb|EFH27603.1| hypothetical protein GVAMD_0670 [Gardnerella vaginalis AMD] Length = 214 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G++IR R+ G++QE+L E L ++ V K+E L+ I+ L + + Sbjct: 5 ISLGEKIRKARLEAGLTQEELSELLMVSRAAVAKWETNRGLPDIENLKFIASALSVSVDY 64 Query: 73 FFDVSPTVCSDISSEENN 90 D + +V I+ + N Sbjct: 65 LLDENNSVDFSITKKPIN 82 >gi|257892810|ref|ZP_05672463.1| predicted protein [Enterococcus faecium 1,231,408] gi|257829189|gb|EEV55796.1| predicted protein [Enterococcus faecium 1,231,408] Length = 163 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R G +QE+L + L IT Q V +E G + + ++++ +S F Sbjct: 21 KKLKQLRKEHGHTQEELAKKLAITRQTVSNWENGRSFPDHENVYCLAKLYGQTLSIFLPD 80 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 P + + I L + F Sbjct: 81 LPEAPMKAEEISSERIQLIRFFICLLVVLSF 111 >gi|126739214|ref|ZP_01754908.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126719831|gb|EBA16539.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 462 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L ++Q+ LG++ + + E V + + +++ ++ Sbjct: 9 GAKLREMRQRLELTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGMDVTELSA 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F P L R + + + L R+ + ++ + Sbjct: 69 GDSERLVSDMREAMADPVFAEDPPPLADLRLTAS-NAPAFARAFLTLHRAYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|325840453|ref|ZP_08167052.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490320|gb|EGC92649.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 120 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 5/120 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR+ R G +Q +L + ++ Q + +E G L+ +S + + + Sbjct: 4 IGSKIRVERNKHGWTQVELANKMNLSKQTINNWEHGRRIPDIQTLKELSNLFNVSLEYLV 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVRSIVSSEKK 132 S + + N ++ I G F I D + +K+ LV +V ++KK Sbjct: 64 GESSPAVPE--NHLVNTVNKIKDTFGDDAVVLFKDISDFDEEDFEKLKTLVE-LVKNQKK 120 >gi|254805385|ref|YP_003083606.1| hypothetical transcriptional regulator [Neisseria meningitidis alpha14] gi|254668927|emb|CBA07148.1| hypothetical transcriptional regulator [Neisseria meningitidis alpha14] gi|254670077|emb|CBA04959.1| transcriptional regulator [Neisseria meningitidis alpha153] gi|254672200|emb|CBA05097.1| transcriptional regulator [Neisseria meningitidis alpha275] Length = 126 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 43/65 (66%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G++IR RR LG S EKL E + ++ QQ+ +YE+GV ++ S L I+ LE+PI+ Sbjct: 19 DRLIGEKIRQRRKELGYSAEKLAEHINLSQQQISRYERGVGKINISHLVDIAVFLETPIA 78 Query: 72 FFFDV 76 +FF Sbjct: 79 WFFQD 83 >gi|261392144|emb|CAX49650.1| putative HTH-type transcriptional regulator [Neisseria meningitidis 8013] Length = 117 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 43/65 (66%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G++IR RR LG S EKL E + ++ QQ+ +YE+GV ++ S L I+ LE+PI+ Sbjct: 10 DRLIGEKIRQRRKELGYSAEKLAEHINLSQQQISRYERGVGKINISHLVDIAVFLETPIA 69 Query: 72 FFFDV 76 +FF Sbjct: 70 WFFQD 74 >gi|327405730|ref|YP_004346568.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321238|gb|AEA45730.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 298 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 45/90 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI R +SQ +L E L I+ Q V K+E+G + L +SE+L+ +++ Sbjct: 5 KIIGQRIADARKKTTISQAQLSERLFISPQAVGKWERGESMPDIITLNRLSEILDVDLNY 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 F D + S+ N++ + + P + Sbjct: 65 FSDGFTSAVSEEKKSSNSLQELLEKPKKSE 94 >gi|192361971|ref|YP_001984171.1| MrfJ protein [Cellvibrio japonicus Ueda107] gi|190688136|gb|ACE85814.1| MrfJ protein [Cellvibrio japonicus Ueda107] Length = 131 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 1/128 (0%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K +D +G R++ R +S L + +G T QQ+ +YE G N++ A++L +++ Sbjct: 3 KPAVTDLDRQIGLRLKKLRQQADISAVALADAIGSTQQQISRYENGQNKLSAAQLYLLAQ 62 Query: 65 VLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L PIS+FF D P + + + + + R R +++L+ Sbjct: 63 SLCVPISWFFLDCDPDPVPRLVKQMPAHYLRNTLDEEINSLRNLWPKLTQNQRTAMLKLL 122 Query: 124 RSIVSSEK 131 S + + Sbjct: 123 DSFMDRKD 130 >gi|295094523|emb|CBK83614.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 97 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 3/98 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+++R R M+Q++L L + FQ + +E S + I+E + Sbjct: 1 MIGEQLRTLRTANKMTQKELAGELSVAFQTISNWENNSIDPSVSMILRIAEYFNCSTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + I + + L L + F +++ Sbjct: 61 LKGDDSSAKYIDTTQLTEHQHA---QLLGLAKEFSKLN 95 >gi|229815069|ref|ZP_04445406.1| hypothetical protein COLINT_02111 [Collinsella intestinalis DSM 13280] gi|229809299|gb|EEP45064.1| hypothetical protein COLINT_02111 [Collinsella intestinalis DSM 13280] Length = 206 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I+ R LG+SQ+ L E + ++ Q + +E G L +S V + Sbjct: 1 MELGSHIKEHRTELGLSQDDLAERIYVSRQTISNWECGRTYPDVQSLLLLSNVFGVTVDS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + + +E + +ST Sbjct: 61 LIKGDVETMAQVMNEAVKKYNALST 85 >gi|332359913|gb|EGJ37727.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 120 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 48/118 (40%), Gaps = 2/118 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ ++Q + G++ +EKG + + I+E + Sbjct: 4 ERLKALRLEANLTQNDVSRQFGVSQPTYSNWEKGEKKPTPDKYPKIAEFYNVSTDYLLGK 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 S SD + + + + L+ +I + +R+ ++E ++I + K+ + Sbjct: 64 SDYKNSD--EIDLSTFEVLYRKTSKNLSDEEKKILEEDLREFLLEREKAIKAMNKEKK 119 >gi|311111466|ref|ZP_07712863.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311066620|gb|EFQ46960.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] Length = 116 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R +SQ +L + L ++ Q + K+E G + L ++E + + Sbjct: 1 MIGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSADYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFIS 96 S S + + F++ Sbjct: 61 L-GSDKTSEPKSVDLEKTLSFLA 82 >gi|225419785|ref|ZP_03762088.1| hypothetical protein CLOSTASPAR_06123 [Clostridium asparagiforme DSM 15981] gi|225041568|gb|EEG51814.1| hypothetical protein CLOSTASPAR_06123 [Clostridium asparagiforme DSM 15981] Length = 264 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 1/117 (0%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V ++G RIR+ R M+ ++L + + + V KYE G + L I++VL Sbjct: 24 SKVSEHIGGRIRMYRKAREMTLQQLADSIHKSRASVSKYENGEITLDVETLFEIAQVLMV 83 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 S DV P + + N +L YF +++ II++ Sbjct: 84 SPSQLMDVRPPMPKSAETSP-NHSAKSPFFQAKRLYFYFYDGRYKRLKDGIIDIYER 139 >gi|41410057|ref|NP_962893.1| hypothetical protein MAP3959c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398890|gb|AAS06509.1| hypothetical protein MAP_3959c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 506 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 37 FVGSRVRQLRHERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 96 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D D ++ + + ++ L R + + Sbjct: 97 SSQDDTRLVAELREVTMDRDLDIDVDPTEVAEMVSA--HPGLARAVVNLHRRYRITTAQL 154 Query: 134 RTIEEE 139 EE Sbjct: 155 AAATEE 160 >gi|154497138|ref|ZP_02035834.1| hypothetical protein BACCAP_01431 [Bacteroides capillosus ATCC 29799] gi|150273537|gb|EDN00665.1| hypothetical protein BACCAP_01431 [Bacteroides capillosus ATCC 29799] Length = 417 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 4/110 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+RI L+R LG+SQE LG+ LG++ Q + K+E + +L +S + P+ + Sbjct: 1 MTVGQRIALKRKELGLSQEGLGDKLGVSRQAIYKWESDASLPEVEKLVALSRIFSVPVGW 60 Query: 73 FFDVSPTVCSDISSEENNVMD----FISTPDGLQLNRYFIQIDDVKVRQK 118 ++ + + + L ++ V+++ Sbjct: 61 LLGEEEHPSGQTDTQPAELTEAQIKMVQEIADRYLAAQTARMPQTPVKRR 110 >gi|191639701|ref|YP_001988867.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|190714003|emb|CAQ68009.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|327383814|gb|AEA55290.1| Transcriptional regulator [Lactobacillus casei LC2W] Length = 185 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 31/62 (50%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+++G R++ R GM+Q +L + L ++ + V +E G N+ + ++ + + Sbjct: 3 DLSLGSRLKQLRKARGMTQSQLADDLFVSRKTVSSWETGRNQPDLQTICRLASYYQLTVD 62 Query: 72 FF 73 Sbjct: 63 DL 64 >gi|307315880|ref|ZP_07595384.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|306898470|gb|EFN29153.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 123 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 7/120 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G IR R I G+SQ KLG +G+TFQQVQK E G +R+ + +L + L ++ Sbjct: 11 DAALGTNIRRFREISGISQNKLGAAIGVTFQQVQKDESGKDRISSKKLVETARTLGCYLN 70 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + ++ + L+L +I + R I LV + + E+ Sbjct: 71 SLYAGIGIGDATLAF-------PDHSTAALKLAANLDRIASSEQRAAIALLVAGLATQEE 123 >gi|311111417|ref|ZP_07712814.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311111482|ref|ZP_07712879.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311066571|gb|EFQ46911.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] gi|311066636|gb|EFQ46976.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri MV-22] Length = 112 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R +SQ +L + L ++ Q + K+E G + L ++E + + Sbjct: 1 MIGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSADYL 60 Query: 74 FDVSPTVCSDISSEENNV 91 T E + Sbjct: 61 LGSDKTSEPKSVDLEKDP 78 >gi|163737438|ref|ZP_02144855.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] gi|161388964|gb|EDQ13316.1| transcriptional regulator, XRE family protein [Phaeobacter gallaeciensis BS107] Length = 462 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 47/128 (36%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R+ L ++Q++ LG++ + + E V + + +++ ++ Sbjct: 9 GAKLREMRLRLSLTQKEFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELSA 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F + R + + + ++ L R+ + ++ + Sbjct: 69 GDSERLVSDMREVMADPVFADDTPPMADLRLTAS-NAPALARALLTLHRAYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|226325758|ref|ZP_03801276.1| hypothetical protein COPCOM_03571 [Coprococcus comes ATCC 27758] gi|225205882|gb|EEG88236.1| hypothetical protein COPCOM_03571 [Coprococcus comes ATCC 27758] Length = 319 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 9/101 (8%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK +G+ +++ R G++QE+L E L ++ + + ++E G N S L Sbjct: 1 MDTKK--------IGEFLKVLRKERGLTQEQLAEILLVSGRTISRWETGTNMPDLSILIK 52 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++E + D + E + ++ + L+ Sbjct: 53 MAEFYNVEVKEILDG-ERKSESMDKELKETLSKVADYNKLE 92 >gi|54027227|ref|YP_121469.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54018735|dbj|BAD60105.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 468 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 9/127 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L + L I+ + + E V + L ISEV +FF Sbjct: 5 YVGARLRQLRTERGLSQVALAQQLEISASYLNQIEHDVRPLTVPVLLKISEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E + D ++ L R++V+ +Y Sbjct: 65 SSQDDTRLIAELQEVVMDQELGIEADTQEIAEMVSAHPS---------LARAMVAMHNRY 115 Query: 134 RTIEEEC 140 R + Sbjct: 116 RNTSAQL 122 >gi|239623932|ref|ZP_04666963.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239521963|gb|EEQ61829.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 242 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 1/117 (0%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ ++G RIR+ R ++ ++L + + + V KYE G + L I++VL Sbjct: 2 SKINEHIGGRIRMYRKARELTLQQLADLIHKSRASVSKYENGEITLDVETLSEIADVLMV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 D SP + N +L YF +++ II++ Sbjct: 62 SPGQLMDFSP-PVPKTPKQPLNHSAKSPFYQAKRLYFYFYDGRYKRLKDGIIDIYER 117 >gi|197302037|ref|ZP_03167098.1| hypothetical protein RUMLAC_00765 [Ruminococcus lactaris ATCC 29176] gi|197298846|gb|EDY33385.1| hypothetical protein RUMLAC_00765 [Ruminococcus lactaris ATCC 29176] Length = 336 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 39/97 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ + ++I R G SQE+L E L ++ Q V K+E + +L ++++ E Sbjct: 1 MDMILSEKIAEERKKNGWSQEELAEKLSVSRQAVSKWESASSVPDLQKLLRMAKIFEVST 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + + D + ++ +F Sbjct: 61 DYLLKDEMGKEEVEKISDYRTEDTVYRNVSMEEANHF 97 >gi|163740881|ref|ZP_02148274.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161385872|gb|EDQ10248.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] Length = 462 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 47/128 (36%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R+ L ++Q++ LG++ + + E V + + +++ ++ Sbjct: 9 GAKLREMRLRLSLTQKEFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELSA 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F + R + + + ++ L R+ + ++ + Sbjct: 69 GDSERLVSDMREVMADPVFADDTPPMADLRLTAS-NAPALARALLTLHRAYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|56695987|ref|YP_166341.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56677724|gb|AAV94390.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 465 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L ++Q+ LG++ + + E V S + +++ ++ Sbjct: 9 GAKLREIRNRLSLTQKDFAAKLGVSLPYLNQMENNNRPVSTSVVLALAQEFGLDVTELST 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F L R + + + IEL R+ + ++ + Sbjct: 69 GDSERLVSDMREALADPIFADAMPPLADLRLTAS-NAPALARAFIELHRTYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|83590834|ref|YP_430843.1| MerR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573748|gb|ABC20300.1| transcriptional regulator, MerR family [Moorella thermoacetica ATCC 39073] Length = 178 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 9/132 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+IR R GMS + + E G+T + + E+ + + L+ I+E L+ PI +F Sbjct: 1 MLGKKIRQLRRERGMSLKDVAEKTGLTSSFLSQVERDLADPSITSLRKIAEALDIPIFYF 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR---SIVSSE 130 + ++ V+ F + +L + R + + R S + Sbjct: 61 LLNPEDHSPVVRKDQRKVLRFPQSHLTYEL------LSPDLNRNMEVMMARLEPGAASCD 114 Query: 131 KKYRTIEEECMV 142 + EEC+V Sbjct: 115 EPLAHPGEECIV 126 >gi|170722756|ref|YP_001750444.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169760759|gb|ACA74075.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 76 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 8 PNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+P + G RIR R+ +GMSQE + G + + E G + ++ +++ L Sbjct: 6 PSPALQHQFGTRIRELRVAMGMSQEAFADRCGFARTYMSRIETGGANPSINAIKVLADAL 65 Query: 67 ESPISFFFDVS 77 IS F+ Sbjct: 66 GVSISALFEGM 76 >gi|94309910|ref|YP_583120.1| XRE family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353762|gb|ABF07851.1| conserved hypothetical protein with lambda repressor-like DNA-binding domains [Cupriavidus metallidurans CH34] Length = 131 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 1/120 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ + R G SQE L G+ + E+G V + +++ L S D Sbjct: 13 GRHLTWLRKQRGWSQEALSLESGLARSYLSGIERGTRNVALYNICTLADTLGVAPSVMLD 72 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S + +P RY ++ D R + + R++ + + Sbjct: 73 FSSHCADAPVEPARAPFNPEISPAVQATLRYMTELSDTD-RDVVAGVARALARKQLRKIA 131 >gi|240851231|ref|YP_002972634.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268354|gb|ACS51942.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 121 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 43/114 (37%), Positives = 65/114 (57%), Gaps = 5/114 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D+ +GK+IRL+R +L MSQ LG+ LG+TFQQ+QKYEKG+NRV A RL IS++L P Sbjct: 7 DIDLFIGKKIRLKRKMLKMSQTTLGQHLGVTFQQIQKYEKGLNRVSAGRLMEISDILNVP 66 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 I+FF+ T D I++ L + ++ ++L+ Sbjct: 67 ITFFYADIITKQQP-----PYHHDEIASSTEEYLLLKRFRTLTTVKKKAFLQLI 115 >gi|163869150|ref|YP_001610390.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018837|emb|CAK02395.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 157 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 49/113 (43%), Positives = 70/113 (61%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRLRR +L MSQ LG LG++FQQ+QKYEKG+NRV A RL IS++L PI Sbjct: 44 IDLLVGKKIRLRRQMLKMSQTTLGHALGVSFQQIQKYEKGLNRVSAGRLMQISDILNVPI 103 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 SFF+ T ++ + IS+ + L + F + +K R I+ L+ Sbjct: 104 SFFYADIITKQQP----PHHHDEVISSTEEYLLLKRFRTLTSIKQR-AILHLI 151 >gi|329666628|gb|AEB92576.1| putative transcriptional regulator, Xre family [Lactobacillus johnsonii DPC 6026] Length = 288 Score = 59.1 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 4/115 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE L E + ++ Q V K+E + ++ +SE+ + Sbjct: 1 MRLGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSIPDIEKIVSLSELFGVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 +++ + PD +L + + + K K+ L ++ Sbjct: 61 LLKSGAPSFEIKTADIPAEDKLLILPD--ELVQKY--LSTAKKSSKLRALSIALA 111 >gi|212697366|ref|ZP_03305494.1| hypothetical protein ANHYDRO_01936 [Anaerococcus hydrogenalis DSM 7454] gi|212675558|gb|EEB35165.1| hypothetical protein ANHYDRO_01936 [Anaerococcus hydrogenalis DSM 7454] Length = 199 Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ +R L ++QE L + L I+ Q V K+EKG++ L +SE+ I +F Sbjct: 33 MIGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSEPSMDNLVKLSEIFGVDIKYF 92 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + S+ DF+ GL + Sbjct: 93 KNKDDKENESFISKI--FWDFLYAAIGLVFYLIYY 125 >gi|116512822|ref|YP_811729.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116108476|gb|ABJ73616.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 175 Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 49/112 (43%), Gaps = 1/112 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R ++Q+ L + +G+ + YE+G L ++ L I Sbjct: 6 INKFVGMKIKEFRKNKKLTQQGLADLVGVKNSAISNYEQGTRIPKRDFLFRVANALGVSI 65 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDG-LQLNRYFIQIDDVKVRQKIIE 121 FF + S SE N + + P + LN Q+++ + ++ ++ Sbjct: 66 DEFFPIQNEETSSTLSEINKISSQLEEPRQKIVLNTASSQLEEQEKAKRAVK 117 >gi|259418297|ref|ZP_05742215.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259345692|gb|EEW57536.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 190 Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N + D +G+R+R R G+SQ L + G+ + E G L+ I Sbjct: 2 NNTNADSEDYELGQRLRAVREQSGVSQRALAKKTGVPNSTISLIESGKMNPSVGALRRIL 61 Query: 64 EVLESPISFFFDVSPT 79 + + +S FF P Sbjct: 62 DGVPISLSEFFAFEPE 77 >gi|300909985|ref|ZP_07127445.1| probable transcriptional regulator [Lactobacillus reuteri SD2112] gi|300892633|gb|EFK85993.1| probable transcriptional regulator [Lactobacillus reuteri SD2112] Length = 234 Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 9/115 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P+ RI R G++ +++ + +G+ + +YE G Q Sbjct: 1 MSENKKPH-------NRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQK 53 Query: 62 ISEVLESPISFF--FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + + + + +S + + F T ++ Y I K Sbjct: 54 LANYFDVTVYYLQGYGLSIDQAKNKVISIIHNAYFEDTELTSAVDSYLRTISPKK 108 >gi|118465480|ref|YP_883812.1| DNA-binding protein [Mycobacterium avium 104] gi|254777121|ref|ZP_05218637.1| DNA-binding protein [Mycobacterium avium subsp. avium ATCC 25291] gi|118166767|gb|ABK67664.1| DNA-binding protein [Mycobacterium avium 104] Length = 474 Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRHERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D D ++ + + ++ L R + + Sbjct: 65 SSQDDTRLVAELREVTMDRDLDIDVDPTEVAEMVSA--HPGLARAVVNLHRRYRITTAQL 122 Query: 134 RTIEEE 139 EE Sbjct: 123 AAATEE 128 >gi|78043349|ref|YP_359532.1| MerR family transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77995464|gb|ABB14363.1| transcriptional regulator, MerR family [Carboxydothermus hydrogenoformans Z-2901] Length = 274 Score = 58.7 bits (140), Expect = 2e-07, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 3/83 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 KK P I VG++++ R G++ E++ + G++ + + E G V + LQ ++ Sbjct: 89 EKKGPR---IAVGQKLKALREKKGLTLEEVSQGTGVSVSYLSRIESGQVNVSIATLQKLA 145 Query: 64 EVLESPISFFFDVSPTVCSDISS 86 E + +FF+ T + Sbjct: 146 TFYEKNLLYFFEGMDTKEQKLVR 168 >gi|238916357|ref|YP_002929874.1| hypothetical protein EUBELI_00410 [Eubacterium eligens ATCC 27750] gi|238871717|gb|ACR71427.1| Hypothetical protein EUBELI_00410 [Eubacterium eligens ATCC 27750] Length = 217 Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++QE++ E LG++ Q + +E + + +SE + + + Sbjct: 5 IGCKIKAARIEKKLTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSECYDVSLDYLL 64 Query: 75 DVSPTVCS--DISSEENNVMDFISTPDGLQLNRYFIQI 110 + S D E NV+ + + + ++ I Sbjct: 65 KGEQKMKSYYDYLEESTNVVKSNANRNKIITILSYLLI 102 >gi|89055867|ref|YP_511318.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88865416|gb|ABD56293.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 469 Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 47/128 (36%), Gaps = 1/128 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG ++R R +G++Q+ LGI+ + + E + + L +++ ++ Sbjct: 6 LYVGAKLRSIRTGVGLTQKDFAAKLGISLPYLNQMENNNRPLSTAVLMGLAQDFGVDVTE 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 E F L R + + + +EL R+ + ++ Sbjct: 66 LSASDADRIVSDMREALADPLFAEVAPALADLRLVAS-NAPTLARAFLELHRAYRQTHER 124 Query: 133 YRTIEEEC 140 +++E Sbjct: 125 LASLDEAL 132 >gi|83945188|ref|ZP_00957537.1| transcriptional regulator, XRE family protein [Oceanicaulis alexandrii HTCC2633] gi|83851358|gb|EAP89214.1| transcriptional regulator, XRE family protein [Oceanicaulis alexandrii HTCC2633] Length = 467 Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 8/121 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R LG +Q + E L ++ + E+ V A L ++E + + F Sbjct: 11 GARLRRLRKELGQTQAQFAESLNVSPSYLNLLERNQRPVTARVLLSLAEAFDVDVRAFAA 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S E D + L R ++ D R ++ + YR Sbjct: 71 ESDRQLLADLKEAAA--DPVLKSTDLD-ARDVQELADAHPRA-----AEALAKLHQAYRE 122 Query: 136 I 136 Sbjct: 123 S 123 >gi|225573403|ref|ZP_03782158.1| hypothetical protein RUMHYD_01595 [Blautia hydrogenotrophica DSM 10507] gi|225039213|gb|EEG49459.1| hypothetical protein RUMHYD_01595 [Blautia hydrogenotrophica DSM 10507] Length = 75 Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ ++ G +R R G SQE+ E I+ + E+G + + + I++ L Sbjct: 4 PDKINYYFGNNLRKFREAKGCSQEEFAEICKISRAYYGRIERGEHSITIEKCALIAQALG 63 Query: 68 SPISFFFDVSPT 79 IS F P Sbjct: 64 IHISVLFTDLPD 75 >gi|309811507|ref|ZP_07705289.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185] gi|308434558|gb|EFP58408.1| DNA-binding helix-turn-helix protein [Dermacoccus sp. Ellin185] Length = 512 Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/137 (14%), Positives = 49/137 (35%), Gaps = 5/137 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + P+ + +G+R+R R + + +G++ + E G S L ++ Sbjct: 34 ERAAPDAL--TIGRRLRHVRQGAERTLGDVAAAVGMSPSALSLIENGKREPRLSVLTSLA 91 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVRQKIIE 121 EVL+ P++ +P L L R ++ + + ++ Sbjct: 92 EVLDVPLADLLATAPPSRRAALEIRLERAQRAEQYSALGLPTVRVGPRLPTEAL-EALVG 150 Query: 122 LVRSIVSSEKKYRTIEE 138 + ++ S + + E Sbjct: 151 MHEALASMQSERAATPE 167 >gi|307319507|ref|ZP_07598934.1| putative phage repressor [Sinorhizobium meliloti AK83] gi|306894879|gb|EFN25638.1| putative phage repressor [Sinorhizobium meliloti AK83] Length = 263 Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 39/103 (37%), Gaps = 8/103 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR RR +G++Q++L + I V ++E + ++ ++++L + Sbjct: 4 IGQRIRQRRKQIGITQQQLADAFDIKRVSVTQWEGDITAPDRDKIAKLADLLGCDPEWLL 63 Query: 75 DVSPTVCSDI--------SSEENNVMDFISTPDGLQLNRYFIQ 109 S + S + D + + + Sbjct: 64 RGSGDPPRALDLGPGSRGSRAVVSSFDPDADEHSNDNAGAYTR 106 >gi|291548789|emb|CBL25051.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 294 Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 50/116 (43%), Gaps = 7/116 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + I+ R GMSQE++ L + Q V K+EKG++ A L ++ +L+ +S Sbjct: 1 MINENIKHFRKTRGMSQEEMAVKLNVVRQTVSKWEKGLSIPDADVLIEMANLLDVSVSQL 60 Query: 74 F--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + S +++ E + + ++ + + ++ +I V + Sbjct: 61 LGIEESIHSNGNLAEELAELNEQLARKKQKE-----KLLYQANQKRGLILFVSFLS 111 >gi|228994652|ref|ZP_04154474.1| hypothetical protein bpmyx0001_53290 [Bacillus pseudomycoides DSM 12442] gi|228765084|gb|EEM13816.1| hypothetical protein bpmyx0001_53290 [Bacillus pseudomycoides DSM 12442] Length = 188 Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 37/95 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R SQ +L + L +T Q V K+E L +S++ + + Sbjct: 18 MELGSKLKKLRKEHNYSQNQLADKLNVTAQAVSKWENDKCAPDIINLVQLSDLYNVSLDY 77 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + + +S E N + + L F Sbjct: 78 LIKSDKELQNHLSLENNRLKVMKYFILCISLIVIF 112 >gi|49476040|ref|YP_034081.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238848|emb|CAF28132.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 125 Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 32/63 (50%), Positives = 45/63 (71%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI VGK+IR RR +L MSQ+ L + L ++ QQ+QKYE G+NRV A L+ I+++L I+ Sbjct: 60 DIFVGKKIRFRRKMLKMSQKTLADHLRVSSQQIQKYETGLNRVSAGCLKEIADILNVSIA 119 Query: 72 FFF 74 FF Sbjct: 120 FFM 122 >gi|153000490|ref|YP_001366171.1| putative phage repressor [Shewanella baltica OS185] gi|151365108|gb|ABS08108.1| putative phage repressor [Shewanella baltica OS185] Length = 263 Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 38/82 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR RR L ++Q+ + E + +T + ++E G++ L ++S+ L + Sbjct: 26 MIGDRIRSRRKELKLTQKNVAETVKVTPSSITQWELGMSTPKGKNLINLSKALNCSPEWL 85 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 + +S+ E+N Sbjct: 86 LSGKEDNQARVSTVESNAEWHA 107 >gi|114762814|ref|ZP_01442246.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114544424|gb|EAU47431.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 130 Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 9/122 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++RL R G++Q +L + +G QQ+ +YE G R+ A++L IS+ L+ P+ FF Sbjct: 5 IRAQLRLYRRSAGLTQNELAKRIGAHVQQIYRYETGAGRIPAAQLWLISQALDMPLDQFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + +D+ E F L R + R +IEL+R++ + + Sbjct: 65 -----IDADMPVSEQEQAVFDDVRTAATLLRPLA----PEQRNAVIELLRTMAQGTQAKK 115 Query: 135 TI 136 Sbjct: 116 KA 117 >gi|84686278|ref|ZP_01014173.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84665805|gb|EAQ12280.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 463 Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 45/128 (35%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R LG++Q+ E LG++ + + E V + +++ ++ Sbjct: 9 GVKLRETRTRLGLTQKAFAEKLGVSLPYLNQMENNNRPVSTGVVLALAQEFGFDVAELST 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F + R + + + +E+ R+ ++ + Sbjct: 69 GDAERLVTDMREALADPVFADAAPPIADLRLVAS-NAPALARAFLEIHRAYRQGHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|223984327|ref|ZP_03634469.1| hypothetical protein HOLDEFILI_01763 [Holdemania filiformis DSM 12042] gi|223963684|gb|EEF68054.1| hypothetical protein HOLDEFILI_01763 [Holdemania filiformis DSM 12042] Length = 647 Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 32/76 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ RR G +QE+L + ++ Q V K+E G + +L+ ++ + Sbjct: 1 MKLAENIQRRRKAAGWTQEQLAQKCAVSRQAVSKWEAGQSVPSLDKLRQLANCFGISVDE 60 Query: 73 FFDVSPTVCSDISSEE 88 P + + Sbjct: 61 LVQDDPAAEPADAHQT 76 >gi|138893994|ref|YP_001124447.1| hypothetical protein GTNG_0320 [Geobacillus thermodenitrificans NG80-2] gi|196250338|ref|ZP_03149031.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134265507|gb|ABO65702.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] gi|196210227|gb|EDY04993.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 260 Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q + K+E G +L I+ + E I + Sbjct: 4 GEKLVKLRKEKGLSQEALAEKLNTTRQAISKWENGQGFPETEKLLMIANIFEVSIDYLLK 63 Query: 76 VSPTVCSDISS 86 S D Sbjct: 64 ESAENNDDKED 74 >gi|294676459|ref|YP_003577074.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294475279|gb|ADE84667.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 465 Score = 58.7 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 4/130 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R LG++Q+ + LG++ + + E V A+ + ++ ++ Sbjct: 9 GVKLRETRARLGLTQKAFADRLGVSLPYLNQMENNHRPVSAAVVLALAGEFGLDVTELSA 68 Query: 76 VSPTVCSDISSEENNVMDFIS--TPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 E F TP L + + +EL R+ + ++ Sbjct: 69 GDAERLVSDMREAMADPVFADGGTPPLADLRLAASNA--PALARAFLELHRAYRQAHERL 126 Query: 134 RTIEEECMVE 143 +++E E Sbjct: 127 ASLDEALGRE 136 >gi|68537028|ref|YP_251733.1| putative transcriptional regulator RamB [Corynebacterium jeikeium K411] gi|260579374|ref|ZP_05847256.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734] gi|68264627|emb|CAI38115.1| putative transcriptional regulator RamB [Corynebacterium jeikeium K411] gi|258602503|gb|EEW15798.1| DNA-binding protein [Corynebacterium jeikeium ATCC 43734] Length = 501 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 10/133 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ +L E L ++ V + E + A+ L+ I+ +FF Sbjct: 21 FVGSRLRQLRKERGISQARLAEILDLSASYVNQIEHDGRPLTAAVLERITAAFGVDPTFF 80 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D T + + TP + ++ +L R+ V +Y Sbjct: 81 ADQDSTRLLAEVQDVTLDPEISPTPADVTELAALVKNHP--------DLARAFVDLHSRY 132 Query: 134 RTIEEE--CMVEQ 144 R + + + E+ Sbjct: 133 RNVSDTLSLLTEE 145 >gi|209808837|ref|YP_002274408.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257880760|ref|ZP_05660413.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257892130|ref|ZP_05671783.1| predicted protein [Enterococcus faecium 1,231,410] gi|257895014|ref|ZP_05674667.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260562584|ref|ZP_05833092.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] gi|209528674|dbj|BAG74975.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257814988|gb|EEV43746.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257828490|gb|EEV55116.1| predicted protein [Enterococcus faecium 1,231,410] gi|257831393|gb|EEV58000.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260073094|gb|EEW61441.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] Length = 460 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 5/128 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++N+G I+ R M+Q E +G++ + E + L+ I+ L+ PI Sbjct: 203 NLNIGNNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKTLEAIARALDVPIV 262 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + S T E + + + +L + + +R+++ E+ + + + Sbjct: 263 ALINDSSTDNIVEPYESLTAENILLKQENEEL-----KYEVESLRKRLYEIQQVVNQGAE 317 Query: 132 KYRTIEEE 139 K ++ Sbjct: 318 KMIPNLKD 325 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHI 62 K IPN D++ KRI+ R LGM+ E+ + +E G N +LQ I Sbjct: 317 EKMIPNLKDVS--KRIKYIRKKLGMTMEQFGSHLSNSPKSTIATWESGRNIPSQKKLQLI 374 Query: 63 SEVLESPISFF 73 + V E+ + Sbjct: 375 AIVGETTTDWI 385 Score = 36.7 bits (83), Expect = 0.95, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 6/80 (7%) Query: 9 NPVDIN-VG----KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI- 62 NP+ +G RI+ + +++ GI + + Y +G + +I Sbjct: 121 NPIIKFTIGGVTLNRIKFYIDSSKKTIKQISTETGINYTTLTNYYRGERNPRNTETWNIL 180 Query: 63 SEVLESPISFFFDVSPTVCS 82 ++ P+S+ + T Sbjct: 181 ADYFHVPVSYLMGLDETNVE 200 Score = 35.2 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 1/58 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RIR G++ E+ G+ +G T V + +GV+ +RL I+ + + + + Sbjct: 10 ERIRKIIESKGLTLERFGDLIGDTPISSVNNWLRGVSLPNKNRLLTIANIGNTSVDWI 67 >gi|328885617|emb|CCA58856.1| DNA-binding protein [Streptomyces venezuelae ATCC 10712] Length = 468 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 2/110 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R GMSQ +L L I+ + + E + L ++E FF + Sbjct: 7 GARLRRLREDRGMSQAELARTLAISPSYLNQMEHDARPLTVPVLLRLTEAFGVDPGFFSE 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 E + + L +I V + +++L R Sbjct: 67 RDTGRLVADLREALSGELAAARVSPSDLADLASRI--PAVARVLVDLGRR 114 >gi|296168067|ref|ZP_06850133.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896874|gb|EFG76502.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 471 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D D ++ + + ++ L R + + Sbjct: 65 ASQDDTRLVAELREVTMDRDLDIDVDPGEVAELVGS--HPALARAVVNLHRRYRITTAQL 122 Query: 134 RTIEEE 139 EE Sbjct: 123 AAATEE 128 >gi|86140054|ref|ZP_01058618.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85823304|gb|EAQ43515.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 462 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 44/128 (34%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L ++Q+ LG++ + + E V + + +++ ++ Sbjct: 9 GAKLREMRTRLELTQKDFATKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELST 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F L R + + + + L R+ + ++ + Sbjct: 69 GDSERLVSDMREAMADPVFADETPPLADLRLTAS-NAPALARAFLSLHRAYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|116629237|ref|YP_814409.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|116629297|ref|YP_814469.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|116094819|gb|ABJ59971.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] gi|116094879|gb|ABJ60031.1| Transcriptional regulator, xre family [Lactobacillus gasseri ATCC 33323] Length = 115 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 31/78 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R +SQ +L + L ++ Q + K+E G + L ++E + + Sbjct: 4 MIGDRIRELRTSHRLSQTELSKLLHVSQQTITKWENGKAEPSSGALAKLAEYFDVSADYL 63 Query: 74 FDVSPTVCSDISSEENNV 91 T E + Sbjct: 64 LGSDKTSEPKSVDLEKDP 81 >gi|229000364|ref|ZP_04159924.1| hypothetical protein bmyco0003_49110 [Bacillus mycoides Rock3-17] gi|228759391|gb|EEM08377.1| hypothetical protein bmyco0003_49110 [Bacillus mycoides Rock3-17] Length = 188 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 37/95 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R SQ +L + L +T Q V K+E L +S++ + + Sbjct: 18 MELGSKLKKLRKEHNYSQNQLADKLNVTAQAVSKWENDKCAPDIINLVQLSDLYNVSLDY 77 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + + +S E N + + L F Sbjct: 78 LIKSDKELQNHLSLENNRLKVMKYFILCISLIVIF 112 >gi|254461674|ref|ZP_05075090.1| transcriptional regulator, XRE family [Rhodobacterales bacterium HTCC2083] gi|206678263|gb|EDZ42750.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium HTCC2083] Length = 466 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 16/131 (12%), Positives = 46/131 (35%), Gaps = 1/131 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I G ++R R + ++Q+ LG++ + + E + + + +++ ++ Sbjct: 6 IYAGSKLRDLRGQVSLTQKDFAAKLGVSLPYLNQMENNKRPISTTVVLALAQEFGFDVTE 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 E + L R + + + +EL R+ + ++ Sbjct: 66 LSSGDAERLVTDMREALADPVLDAVDPPLADLRLTAS-NAPALARAFLELHRAYRQTHER 124 Query: 133 YRTIEEECMVE 143 +++E E Sbjct: 125 LASLDEALGRE 135 >gi|226361258|ref|YP_002779036.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226239743|dbj|BAH50091.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 470 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 9/127 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L + L I+ + + E V + L ISEV +FF Sbjct: 5 FVGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVDTTFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E + D ++ L +++V+ +++ Sbjct: 65 SSQDDTRLIAEMREVALDQEMGIDADAQEIAEMVASHP---------GLAKAMVNMHRRF 115 Query: 134 RTIEEEC 140 R + Sbjct: 116 RNTTAQL 122 >gi|111019118|ref|YP_702090.1| DNA binding protein [Rhodococcus jostii RHA1] gi|110818648|gb|ABG93932.1| possible DNA binding protein [Rhodococcus jostii RHA1] Length = 470 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 45/127 (35%), Gaps = 9/127 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L + L I+ + + E V + L ISEV +FF Sbjct: 5 FVGTRLRQLRTERGLSQAALAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVDTTFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E + D ++ L +++V+ +++ Sbjct: 65 SSQDDTRLIAEMREVALDQEMGIDADAQEIAEMVASHP---------GLAKAMVNMHRRF 115 Query: 134 RTIEEEC 140 R + Sbjct: 116 RNTTAQL 122 >gi|22023151|gb|AAM88940.1|AF313446_1 putative transcriptional regulator [Rhizobium etli] Length = 94 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 5/77 (6%) Query: 60 QHISEVLESPISFFFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 Q I+EVL + SFFF+ + + + + V +F+ T +GL LNR F++I D Sbjct: 2 QRIAEVLHTSPSFFFEQNESQPLSLQGLALPDGADPVAEFLRTKEGLVLNRAFLKIADPD 61 Query: 115 VRQKIIELVRSIVSSEK 131 +R+ II LV+++ +E Sbjct: 62 IRETIIALVKAMAQAES 78 >gi|192291025|ref|YP_001991630.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192284774|gb|ACF01155.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length = 474 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 45/130 (34%), Gaps = 8/130 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R GM+Q+ L +G++ + + E + L ++ L + F Sbjct: 5 YVGARLRRLREQRGMTQQALATAVGVSPSYLNQIENNQRPLTVPVLLKLNATLGIDVQLF 64 Query: 74 FDVSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + E + V + ++ D +L + ++ + R + Sbjct: 65 SEDDEARLIADLKEVLSDPMVGESLTANDVRELVTSM-----PAAGRALVAIYRRYHLAL 119 Query: 131 KKYRTIEEEC 140 ++ + Sbjct: 120 EQSAALAARL 129 >gi|29347964|ref|NP_811467.1| hypothetical protein BT_2554 [Bacteroides thetaiotaomicron VPI-5482] gi|253572556|ref|ZP_04849958.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|29339866|gb|AAO77661.1| putative DNA-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|251837971|gb|EES66060.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 147 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 50/129 (38%), Gaps = 1/129 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G IR R+ M+QE L + + ++ V KYE+ + + L S L P + Sbjct: 11 VHHGHNIRRFRIEKNMNQEVLSQLVHLSQSAVSKYEQ-MRVIDDEMLHRFSRALGVPFEY 69 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + + ++ + ++++ +KI EL ++ + + Sbjct: 70 LKSLEEDAQTVVFENNTVNNNDQASANIGGYVEENNRVNNYNPIEKITELYERLLKEKDE 129 Query: 133 YRTIEEECM 141 E + Sbjct: 130 KYAALERRL 138 >gi|91206072|ref|YP_538427.1| hypothetical protein RBE_1257 [Rickettsia bellii RML369-C] gi|157826572|ref|YP_001495636.1| hypothetical protein A1I_01005 [Rickettsia bellii OSU 85-389] gi|91069616|gb|ABE05338.1| unknown [Rickettsia bellii RML369-C] gi|157801876|gb|ABV78599.1| hypothetical protein A1I_01005 [Rickettsia bellii OSU 85-389] Length = 186 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 36/153 (23%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +R++ RR+ +G+SQ++LGE L I+ Q++KYE+G++ + SRL ++++L +P+ Sbjct: 31 IDKIASERLKQRRIAIGLSQKELGETLDISAIQIKKYEEGISTIPVSRLYVLAKILNTPL 90 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIS---------------------------------- 96 FF+ S + +++++N + I Sbjct: 91 KHFFNTSISEEERLNTDDNIFDNEIEYLSNEIDEHLLNNVAEEDEDYEYNIPFSREDLTR 150 Query: 97 --TPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + L L R F +I + VR+ IIELVRS+ Sbjct: 151 TLEREILSLTRAFTKIQNPDVRKIIIELVRSLA 183 >gi|257064295|ref|YP_003143967.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256791948|gb|ACV22618.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 196 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 33/92 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG RIR R +SQE L E + ++ Q V +E G L +S + I Sbjct: 1 MEVGNRIREERDRANLSQEGLAEKIFVSRQTVSNWETGKTYPDVQSLLLMSNLFGVSIDS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + M ++ L Sbjct: 61 LVKGDIVAMNEELDRSASRMKTLAGSMTGLLV 92 >gi|315037492|ref|YP_004031060.1| transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|325955952|ref|YP_004286562.1| transcriptional regulator [Lactobacillus acidophilus 30SC] gi|312275625|gb|ADQ58265.1| putative transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|325332517|gb|ADZ06425.1| transcriptional regulator [Lactobacillus acidophilus 30SC] Length = 169 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 41/112 (36%), Gaps = 1/112 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R G+SQE L E + ++ Q V K+E + ++ +SE+ + Sbjct: 1 MKLGQKIAELRKKSGLSQEALAEKMNVSRQAVSKWESNQSIPDIEKIVDLSELFGVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI-IELV 123 + ++ +Y + + + + L+ Sbjct: 61 LLKNGTPSFELPGKTTEEETKKLPKISDHEITQYLEVAKNAAHFESLALALI 112 >gi|288962158|ref|YP_003452453.1| transcriptional regulator [Azospirillum sp. B510] gi|288914424|dbj|BAI75909.1| transcriptional regulator [Azospirillum sp. B510] Length = 483 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 8/138 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K + +G ++R R G++Q ++ + LGI+ + E V L Sbjct: 4 MDKKAM-------LGPKVRRLRRDQGLTQAQMADQLGISPSYLNLIEHNQRPVTVPLLLK 56 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + + + F + + E F + Q R + + Q ++ Sbjct: 57 LGQRFGVDLQAFAEDEESRLVAGLREVFADPLFDGSDIKNQDFRELAAVA-PTLGQAVVA 115 Query: 122 LVRSIVSSEKKYRTIEEE 139 L R + + + E Sbjct: 116 LYRGFRGARDDLQALAER 133 >gi|229135297|ref|ZP_04264092.1| hypothetical phagelike protein [Bacillus cereus BDRD-ST196] gi|228648166|gb|EEL04206.1| hypothetical phagelike protein [Bacillus cereus BDRD-ST196] Length = 242 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 4/113 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VG++I+ R + M+Q++LG +G + YE G N L I+ L Sbjct: 15 MKQNISKYVGQQIKHYRKLKKMTQKELGLRIGKKHNTISSYENGTNEPEQDALFAIANAL 74 Query: 67 ESPISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + I+ F + S + ++ T L I D ++ Sbjct: 75 DVSINDLFPSTMEPYTITKETTSIVAESQYNYFPTSISAGLPHCIDSISDNEL 127 >gi|94495587|ref|ZP_01302167.1| hypothetical protein SKA58_06045 [Sphingomonas sp. SKA58] gi|94424975|gb|EAT09996.1| hypothetical protein SKA58_06045 [Sphingomonas sp. SKA58] Length = 470 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 56/130 (43%), Gaps = 10/130 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R+ R LG+SQ ++ E LG++ + E+ + A + ++ + I Sbjct: 9 LYLGPKLRVLRRELGLSQTQMAEELGVSPSYLNHLERNQRPLTAQMMLRLANTYDIDIRD 68 Query: 73 FF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR--QKIIELVR-- 124 F D P +I S+ IS + L++ + + + R + + +L R Sbjct: 69 FAAPSTDGGPRELGEILSDALVRDIGISRDEVLEVAENYPGVTEAVARFYRALTDLRRVP 128 Query: 125 --SIVSSEKK 132 ++ ++ Sbjct: 129 GEALAGGAER 138 >gi|215429287|ref|ZP_03427206.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|219556284|ref|ZP_03535360.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis T17] gi|260199463|ref|ZP_05766954.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis T46] gi|289441846|ref|ZP_06431590.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289568383|ref|ZP_06448610.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289752496|ref|ZP_06511874.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289414765|gb|EFD12005.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289542136|gb|EFD45785.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289693083|gb|EFD60512.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] Length = 474 Score = 58.3 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D D ++ + + ++ L R + + Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIAIDQHEVAEMVSA--HPGLARAVVNLHRRYRITTARL 122 Query: 134 RTIEEE 139 EE Sbjct: 123 AAATEE 128 >gi|83593475|ref|YP_427227.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576389|gb|ABC22940.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 196 Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GKRI R GMSQ L + LG+ + YE+G N ++ ++ +L +F Sbjct: 2 IEIGKRIAEARKDQGMSQYALAKLLGVNQSTIAYYERGRNTPKPWIVEDLARILNVSAAF 61 Query: 73 FFDVSPTVCS 82 Sbjct: 62 LLYGRERTDP 71 >gi|312109406|ref|YP_003987722.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] gi|311214507|gb|ADP73111.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] Length = 139 Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 6/130 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++++ R +QE+L + L I+ Q+ K+E G L+ +S + E I F Sbjct: 5 RKLGEKLKYLRKQHNWTQEQLAQHLNISRSQISKWENGELLPDVQSLEKLSNLYEVSIDF 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 T + L + YF Q D++ E++ S+ K Sbjct: 65 LIGKHTTKKELLREMNLLYQTDRIDEKMLDIIDYFKQNPDME------EMIYSLAQLPAK 118 Query: 133 YRTIEEECMV 142 R E ++ Sbjct: 119 KRKHLETIII 128 >gi|70725248|ref|YP_252162.1| hypothetical protein SH0247 [Staphylococcus haemolyticus JCSC1435] gi|68445972|dbj|BAE03556.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 112 Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 5/97 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++IR R ++Q++L L T Q V K+E+G + +++ + Sbjct: 1 MKLAEQIRKHRKENNLTQDQLATELHTTRQTVSKWEQGTIEPNVQMIVQLAQRFDISTDE 60 Query: 73 FFDVS-----PTVCSDISSEENNVMDFISTPDGLQLN 104 S E N DF+S L Sbjct: 61 LLTGQTSHPYKREESQSYPEHLNFWDFLSQKWWFVLI 97 >gi|83952252|ref|ZP_00960984.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83837258|gb|EAP76555.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 477 Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 43/125 (34%), Gaps = 2/125 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R LG++Q+ LG++ + + E V + + +++ ++ Sbjct: 21 GAKLRETRSRLGLTQKDFAARLGVSLPYLNQMENNNRPVSTTVVLALAQEFGFDVTELGS 80 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F P L + + +EL + + ++ + Sbjct: 81 GDAERMVSDMREALADPVFSDPPPLSDLRLAAGNA--PALARAFLELHAAYRQTHERLAS 138 Query: 136 IEEEC 140 ++E Sbjct: 139 LDEAL 143 >gi|240851233|ref|YP_002972636.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268356|gb|ACS51944.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 121 Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +GK+IRL+R +L MSQ LG+ LG+TFQQ+QKYEKG+NRV A RL IS++L P+ Sbjct: 8 IDLFIGKKIRLKRKMLKMSQTTLGQHLGVTFQQIQKYEKGLNRVSAGRLMEISDILNVPL 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 SFF+ T D I++ L + + ++ ++L+ Sbjct: 68 SFFYADIITKKQP-----PYHHDEIASSTEEYLLLKRFRTLTMVKKKAFLQLI 115 >gi|154496775|ref|ZP_02035471.1| hypothetical protein BACCAP_01068 [Bacteroides capillosus ATCC 29799] gi|150274027|gb|EDN01127.1| hypothetical protein BACCAP_01068 [Bacteroides capillosus ATCC 29799] Length = 348 Score = 58.3 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 5/128 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I+ R+ ++QE L + L I+ Q V K+E G + L I+ I Sbjct: 4 ELGNKIKQLRLQKSVTQETLAKTLHISCQTVSKWENGTSMPDILLLPEIAVYFGCTIDDL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIELVRSI--VSS 129 FD+S + + + +ST + Q F+ ++ + + + + L+ S+ + Sbjct: 64 FDLSEQARFERIEHMLEMQEALSTEEFRQ-TEAFLKGKLGEKERKSDALRLLSSLFNHKA 122 Query: 130 EKKYRTIE 137 ++ R E Sbjct: 123 DELRRAAE 130 >gi|253574140|ref|ZP_04851482.1| SOS-response transcriptional repressor [Paenibacillus sp. oral taxon 786 str. D14] gi|251846617|gb|EES74623.1| SOS-response transcriptional repressor [Paenibacillus sp. oral taxon 786 str. D14] Length = 290 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 4/130 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ GM+ +LG +G+T + K EKG + + L ISE + + Sbjct: 6 KALGERIKKCRLEKGMTLRELGSQVGMTSSALSKVEKGSVSITSENLFAISEAFGVSVDW 65 Query: 73 FFDVSPTVCSD---ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 D ++E I + ++ F + D + + + + +R + Sbjct: 66 LLTGKEAQFKDEGYDTNEVRKEATPIFFDEEWEVVSQFRNLSDEE-KTFVKQYLRFTQAQ 124 Query: 130 EKKYRTIEEE 139 +K ++ E+E Sbjct: 125 KKDQQSSEDE 134 >gi|197284179|ref|YP_002150051.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194681666|emb|CAR40739.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 106 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 45/76 (59%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ V+ +VGK+I+ +R LG + +L + +G++ QQ +YE+G+N++ L Sbjct: 1 MMNFDFANIDVNASVGKKIQKKRKELGYTGMQLAKKIGVSQQQFSRYERGMNKIDLRHLV 60 Query: 61 HISEVLESPISFFFDV 76 ++ L +PI +FF+ Sbjct: 61 LLALYLNTPIYWFFED 76 >gi|219668902|ref|YP_002459337.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539162|gb|ACL20901.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 322 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 37/108 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L E + ++ Q + K+E +R+ ++ + + Sbjct: 1 MILAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAIPDINRILELARLFGVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++E +S + + I+ Sbjct: 61 LLKDDFETAVYSGADETENYIRVSLQEMNDFLKNNANYGSRIALGAIL 108 >gi|325847281|ref|ZP_08169999.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480912|gb|EGC83961.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 167 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 2/95 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ +R L ++QE L + L I+ Q V K+EKG++ L +SE+ I +F Sbjct: 1 MIGEKIKNKRKELNLTQEYLAKELNISRQAVSKWEKGLSEPSMDNLVKLSEIFGVDIKYF 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + S+ DF+ GL + Sbjct: 61 KNNDEKENDSFISKI--FWDFLYAAIGLVFYLIYY 93 >gi|89894475|ref|YP_517962.1| hypothetical protein DSY1729 [Desulfitobacterium hafniense Y51] gi|89333923|dbj|BAE83518.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 322 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 35/94 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L E + ++ Q + K+E +R+ ++ + + Sbjct: 1 MILAEKILSLRKSNGWSQEELAEKMNVSRQSISKWESAAAIPDINRILELARLFGVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 ++E +S + + Sbjct: 61 LLKDDFETAVYSGADETENYIRVSLQEMNDFLKN 94 >gi|222084519|ref|YP_002543048.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221721967|gb|ACM25123.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 189 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 38/87 (43%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + ++I +G RI+ R+ GM+ ++L ++ + + E+ AS L + L Sbjct: 1 MDDDLEIAIGARIKQLRIARGMTLDELANASAVSRAMISRIERAEASPTASLLARLCAAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMD 93 +S FF S ++ + + Sbjct: 61 GLSLSSFFAEEEEDVSPLARSDAQPIW 87 >gi|99035917|ref|ZP_01314965.1| hypothetical protein Wendoof_01000195 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 306 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 10/114 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D VG++++ R+ G +Q+ L E +G+ + + +YEKG R+ RL I+ L I Sbjct: 9 LDYEVGEKVKSWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAIAGALSVSI 68 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + S + E L L R + +I+D ++R+ L + Sbjct: 69 TDLITASKEKIGFKNEEGE----------ILNLVREYKKINDQELRRMFCLLTK 112 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 14/130 (10%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + VGK+I+ R++ +Q+ L E + T ++ YE+G +L I+E L Sbjct: 161 SIYCQVGKKIKEWRLVREYTQKDLAEKMNTTRDEISNYEQGRVATPLGKLYEIAEALSIS 220 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVS 128 I+ + L + + +I+ ++R +I+ L I Sbjct: 221 ITDLLTEEDEGSRVENELP-------------DLIKEYKEIESQELRHALIKSLFEGIRI 267 Query: 129 SEKKYRTIEE 138 E+K R IE Sbjct: 268 CEEKVREIER 277 >gi|332654251|ref|ZP_08419995.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] gi|332517337|gb|EGJ46942.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] Length = 230 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 38/84 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +RI L R G+SQE+LGE LG++ Q V K+E G N + L + + + Sbjct: 1 MELKERIALARKQAGLSQEQLGEKLGVSRQAVSKWESGQNNPDVAYLAEMCRLFGVSSDW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 T + + + ++ Sbjct: 61 LLLGKETEQASAPARCPDCQTIVT 84 >gi|227544982|ref|ZP_03975031.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|227185043|gb|EEI65114.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] Length = 247 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 9/115 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P+ RI R G++ +++ + +G+ + +YE G Q Sbjct: 14 MSENKKPH-------NRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQK 66 Query: 62 ISEVLESPISFF--FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + + + + +S + + F T ++ Y I K Sbjct: 67 LANYFDVTVYYLQGYGLSIDQAKNKVISIIHNAYFEDTELTSAVDSYLRTISPKK 121 >gi|210634400|ref|ZP_03298102.1| hypothetical protein COLSTE_02024 [Collinsella stercoris DSM 13279] gi|210158825|gb|EEA89796.1| hypothetical protein COLSTE_02024 [Collinsella stercoris DSM 13279] Length = 206 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 32/85 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I+ R LG+SQ+ L + ++ Q + +E G L +S V + Sbjct: 1 MELGAHIKEHRKELGLSQDDLAAKIYVSRQTISNWEVGRTYPDVQSLLLLSNVFGVTVDS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + + + +ST Sbjct: 61 LIKGDVETMAQVMDAAVKKYNALST 85 >gi|296141343|ref|YP_003648586.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029477|gb|ADG80247.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 466 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 47/128 (36%), Gaps = 13/128 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L E L I+ + + E V + L I++V SFF Sbjct: 5 FVGARLRGLRKERGLSQASLAEALEISPSYLNQIEHDVRPLSVPVLLKITDVFGVDTSFF 64 Query: 74 FDVSPTVCSDISSEENNVMD-FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 T E +D ST + L R R++V+ ++ Sbjct: 65 NSQDQTRLIAELREVTMDVDAPTSTEELSDLARDHP------------GFARAMVALHRR 112 Query: 133 YRTIEEEC 140 Y ++ Sbjct: 113 YLGAADQL 120 >gi|183980814|ref|YP_001849105.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183174140|gb|ACC39250.1| transcriptional regulatory protein [Mycobacterium marinum M] Length = 474 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRNERGFSQAALAQLLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D + D ++ + + ++ L R + + Sbjct: 65 SSQDDTRLVAELREVTMDRDLDISVDPTEVAEMVSA--HPSLARAMVNLHRRYRITTAQL 122 Query: 134 RTIEEE 139 EE Sbjct: 123 AAATEE 128 >gi|257883596|ref|ZP_05663249.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|257819254|gb|EEV46582.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] Length = 383 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 5/128 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++N+G I+ R M+Q E +G++ + E + L+ I+ L+ PI Sbjct: 126 NLNIGNNIKNIRKSKNMTQTDFAELMGLSRSYIGDLENNRSNPSIKTLEAIARALDVPIV 185 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + S T E + + + +L + + +R+++ E+ + + + Sbjct: 186 ALINDSSTDNIVEPYESLTAENILLKQENEEL-----KYEVESLRKRLYEIQQVVNQGAE 240 Query: 132 KYRTIEEE 139 K ++ Sbjct: 241 KMIPNLKD 248 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHI 62 K IPN D++ KRI+ R LGM+ E+ + +E G N +LQ I Sbjct: 240 EKMIPNLKDVS--KRIKYIRKKLGMTMEQFGSHLSNSPKSTIATWESGRNIPSQKKLQLI 297 Query: 63 SEVLESPISFF 73 + V E+ + Sbjct: 298 AIVGETTTDWI 308 Score = 36.3 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 6/80 (7%) Query: 9 NPVDIN-VG----KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI- 62 NP+ +G RI+ + +++ GI + + Y +G + +I Sbjct: 44 NPIIKFTIGGVTLNRIKFYIDSSKKTIKQISTETGINYTTLTNYYRGERNPRNTETWNIL 103 Query: 63 SEVLESPISFFFDVSPTVCS 82 ++ P+S+ + T Sbjct: 104 ADYFHVPVSYLMGLDETNVE 123 >gi|114797386|ref|YP_760560.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114737560|gb|ABI75685.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 127 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 14/135 (10%) Query: 1 MVGNK------KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 M+ + + P VD VG++IR R+ + +LG+ LGI+ QQ+QKYE G NR+ Sbjct: 1 MMQEEIRAAGSRSPTKVDQQVGEKIRELRIAQNFTLSELGQELGISHQQLQKYETGTNRL 60 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 A L ++ L PI+ F S + + S L + V Sbjct: 61 SAGMLSSVARALRVPIAELFQTSDATSQEARDPVSE-----SRARCHALI---DRTSSVG 112 Query: 115 VRQKIIELVRSIVSS 129 + + +++R++ + Sbjct: 113 KLETMAKVLRALSAD 127 >gi|317490116|ref|ZP_07948605.1| hypothetical protein HMPREF1023_02305 [Eggerthella sp. 1_3_56FAA] gi|325833610|ref|ZP_08166059.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|316910821|gb|EFV32441.1| hypothetical protein HMPREF1023_02305 [Eggerthella sp. 1_3_56FAA] gi|325485534|gb|EGC88003.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 380 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 39/80 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ + +R+ RR G+SQE L LG++ Q V K+E+ + L ++++ + Sbjct: 1 MNVEIAQRLAERRKQAGLSQEALAARLGVSRQAVSKWERSESSPDTDNLIALAQLYGLSL 60 Query: 71 SFFFDVSPTVCSDISSEENN 90 V + D++ E + Sbjct: 61 DDLLYVDEEIRDDVTFEAAD 80 >gi|257792196|ref|YP_003182802.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476093|gb|ACV56413.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 380 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 39/80 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ + +R+ RR G+SQE L LG++ Q V K+E+ + L ++++ + Sbjct: 1 MNVEIAQRLAERRKQAGLSQEALAARLGVSRQAVSKWERSESSPDTDNLIALAQLYGLSL 60 Query: 71 SFFFDVSPTVCSDISSEENN 90 V + D++ E + Sbjct: 61 DDLLYVDEEIRDDVTFEAAD 80 >gi|225874839|ref|YP_002756298.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225793286|gb|ACO33376.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 148 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 5/120 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G IR R+ G+SQ + + G+ + + E G L I+ L+ P++ Sbjct: 34 MKIGMTIRGYRLQKGLSQGDIEKRTGLLRCYLSRVENGHTVPSLDTLAKIAGALDLPLAQ 93 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF + E N L R + + R+ ++ +V+ ++ K Sbjct: 94 FFAED-----SLGRELNTQKLTDDELRFLTQIRRYSSNLNDSDRKLLLAMVKKFAATAAK 148 >gi|167751035|ref|ZP_02423162.1| hypothetical protein EUBSIR_02020 [Eubacterium siraeum DSM 15702] gi|167655953|gb|EDS00083.1| hypothetical protein EUBSIR_02020 [Eubacterium siraeum DSM 15702] Length = 226 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 34/69 (49%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ ++G +I+ R+ ++QE++ E LG++ Q + +E + + +S+ E Sbjct: 6 HGMEHDIGSKIKAARLEKKLTQEQVAEILGVSRQTISNWENEKSYPDIISVIKMSDCYEV 65 Query: 69 PISFFFDVS 77 + + Sbjct: 66 SLDYLLKGE 74 >gi|148262670|ref|YP_001229376.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396170|gb|ABQ24803.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 113 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 13/110 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R+R R G +QE+L E +G++ QQ+QKYE G N++ RLQ +++ L PI Sbjct: 8 REIGHRLRQLRQQAGWTQERLAEQIGVSTQQIQKYECGTNKMNTDRLQQVAQALSIPIQS 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 F + +E+ L + I + ++++ I+++ Sbjct: 68 LFTDTNDSLPLAVAEKL-------------LIDSYRAIPNKEIQESILKI 104 >gi|266625424|ref|ZP_06118359.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288862669|gb|EFC94967.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 232 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 9/101 (8%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK +G+ +++ R G++QE+L E L ++ + V ++E G+N S L Sbjct: 1 MDTKK--------IGEFLKVLRKEKGLTQEQLAESLLVSGRTVSRWETGMNMPDLSVLIQ 52 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++E + + D + E + ++ + L+ Sbjct: 53 MAEFYDVEVKEILDG-ERKSEIMDKELKETLSKVADYNKLE 92 >gi|212712199|ref|ZP_03320327.1| hypothetical protein PROVALCAL_03284 [Providencia alcalifaciens DSM 30120] gi|212684945|gb|EEB44473.1| hypothetical protein PROVALCAL_03284 [Providencia alcalifaciens DSM 30120] Length = 99 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 2/89 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N K P V VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L Sbjct: 1 MFMNTKYP--VACAVGQKIKSLRKAQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLV 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEEN 89 + +VL + FF ++ S E Sbjct: 59 RVLKVLGVNMGEFFSEVLQDDTNASEERE 87 >gi|77745351|gb|ABB02576.1| putative transcriptional regulator [Lactobacillus reuteri] Length = 234 Score = 57.9 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 9/115 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P+ RI R G++ +++ + +G+ + +YE G Q Sbjct: 1 MSENKKPH-------NRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQK 53 Query: 62 ISEVLESPISFF--FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +S + + + + +S + + F T ++ Y I K Sbjct: 54 LSNYFDVTVYYLQGYGLSIDQAKNKGVSIIHNAYFEDTELTSAVDSYLRTISPKK 108 >gi|257413316|ref|ZP_05591602.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257203934|gb|EEV02219.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 187 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 36/83 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I R + GM+QE+L E L ++ Q + K+E + IS + + Sbjct: 15 MEIGNKINQLRKLSGMTQEQLAEKLNVSRQTISKWESDSTSPDLESIVKISRIFHVSLDD 74 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 ++ + E+ + D + Sbjct: 75 LLKEGEAGVANKTDEQITLEDLM 97 >gi|118619629|ref|YP_907961.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118571739|gb|ABL06490.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 474 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRNERGFSQAALAQLLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D + D ++ + + ++ L R + + Sbjct: 65 SSQDDTRLVAELREVTMDRDLDISVDPTEVAEMVSA--HPSLARAMVNLHRRYRITTAQL 122 Query: 134 RTIEEE 139 EE Sbjct: 123 AAATEE 128 >gi|110679308|ref|YP_682315.1| DNA-binding protein, putative [Roseobacter denitrificans OCh 114] gi|109455424|gb|ABG31629.1| DNA-binding protein, putative [Roseobacter denitrificans OCh 114] Length = 475 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 44/129 (34%), Gaps = 3/129 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R +G +Q+ LG++ + + E V + + +++ ++ + Sbjct: 18 GAKLRELRTRIGHTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELSE 77 Query: 76 VSPTVCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 E F T P L ++L RS +++ Sbjct: 78 GDSERLVSDMREALADPVFAETLPPLADLRLAASNAPTFAH--AFLKLHRSYRQMQERLA 135 Query: 135 TIEEECMVE 143 +++E E Sbjct: 136 SLDEALGRE 144 >gi|332671330|ref|YP_004454338.1| XRE family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340368|gb|AEE46951.1| transcriptional regulator, XRE family [Cellulomonas fimi ATCC 484] Length = 488 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 3/127 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R GM+ E LG +G QV E G L +++ L P++ Sbjct: 20 LGRRIRHLRTGRGMTLEDLGRAIGRAPSQVSMLENGHREPRVGVLAAVADALGVPVAELL 79 Query: 75 DVSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 P E + + + + + + ++ L + + Sbjct: 80 RPEPPTRRAALEVELERAQRGPLFASLHIPEVKVGRSLPTDAL-EALVRLQAEVQRLLTE 138 Query: 133 YRTIEEE 139 EE Sbjct: 139 NAATPEE 145 >gi|328955766|ref|YP_004373099.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328456090|gb|AEB07284.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 72 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 7 IPNPVDINVGKRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + + VD +G RIR R G+SQ +GI E+G + L IS+ Sbjct: 1 MSDSVDQQIGARIRCLRKKRTGLSQNGFACQIGIDRSYFATIEQGKHSATLQMLARISQG 60 Query: 66 LESPISFFFDV 76 L + F+ Sbjct: 61 LGVSLQELFEG 71 >gi|297616433|ref|YP_003701592.1| XRE family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297144270|gb|ADI01027.1| transcriptional regulator, XRE family [Syntrophothermus lipocalidus DSM 12680] Length = 128 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 49/116 (42%), Gaps = 1/116 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR +R LG+S+ +L E +G++ V + E+G + + L + Sbjct: 6 KALGRRIREQRQKLGLSRSQLAEIIGVSDYYVGQLERGERVMSLAVFMRFVFCLRVSPDY 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + + + F S+ +L + ++ + I E+V+ +++ Sbjct: 66 LLTGAQNDNILSVGDPGHTHYFASSKPDPELTELLARCSSQEL-ELIKEIVKLLLA 120 >gi|225575279|ref|ZP_03783889.1| hypothetical protein RUMHYD_03368 [Blautia hydrogenotrophica DSM 10507] gi|225037475|gb|EEG47721.1| hypothetical protein RUMHYD_03368 [Blautia hydrogenotrophica DSM 10507] Length = 341 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 45/110 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L E G++ Q + K+E ++ S++ +SE+ + + Sbjct: 1 MLLSEKILTLRKKNGWSQEELAEKCGVSRQSISKWEGNLSTPELSKIVLLSELFQVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 +D +E + + + L I + K + L Sbjct: 61 LLKEDVQPQTDTDAELPPMEAPSHSLRQVTLAEATAFIQAREQAAKKMAL 110 >gi|84501573|ref|ZP_00999745.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84390194|gb|EAQ02753.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 466 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R LG++Q+ LG++ + + E V + + +++ ++ Sbjct: 9 GAKLRETRQRLGLTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLSLAQEFGFDVTELST 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E L R + + + I L R+ + ++ + Sbjct: 69 GDSERLVSDMREAMADPVLADVAPPLADIRLTAS-NAPALARAFIHLHRAYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|260203616|ref|ZP_05771107.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis K85] gi|289573051|ref|ZP_06453278.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289537482|gb|EFD42060.1| transcriptional regulator [Mycobacterium tuberculosis K85] Length = 474 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 45/126 (35%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLDQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T + E D D ++ + + ++ L R + + Sbjct: 65 ASQDDTRLAAELREVTLDRDLDIAIDPHEVAEMVSA--HPGLARAVVNLHRRYRITTAQL 122 Query: 134 RTIEEE 139 EE Sbjct: 123 AAATEE 128 >gi|213966012|ref|ZP_03394201.1| DNA-binding protein [Corynebacterium amycolatum SK46] gi|213951307|gb|EEB62700.1| DNA-binding protein [Corynebacterium amycolatum SK46] Length = 478 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 1/126 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L + LG++ V + E V + L I++ +FF Sbjct: 9 YVGSRLRQLRRERDLSQAALAQALGLSASYVNQIEHDVRPLTVPVLLRITDTFGVDATFF 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + + +P LQ ++ D + + ++++ R + K Sbjct: 69 SRDDDSRLLAEVQDVVMDKEIAKSPMDLQEISEMVR-DHPDIARIMVDIHRRYRNVTDKL 127 Query: 134 RTIEEE 139 EE Sbjct: 128 SLATEE 133 >gi|291530129|emb|CBK95714.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] gi|291556915|emb|CBL34032.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 219 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 30/63 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++QE++ E LG++ Q + +E + + +S+ E + + Sbjct: 5 IGSKIKAARLEKKLTQEQVAEILGVSRQTISNWENEKSYPDIISVIKMSDCYEVSLDYLL 64 Query: 75 DVS 77 Sbjct: 65 KGE 67 >gi|254819794|ref|ZP_05224795.1| DNA-binding protein [Mycobacterium intracellulare ATCC 13950] Length = 471 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D D ++ + + ++ L R + + Sbjct: 65 SSQDDTRLVAELREVTLDRDLDIDVDPTEVAEMVSA--HPGLARAVVNLHRRYRITTAQL 122 Query: 134 RTIEEE 139 EE Sbjct: 123 AAATEE 128 >gi|261343818|ref|ZP_05971463.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282568202|gb|EFB73737.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 103 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +DI+ +G RI+ RR LG+S L L ++ QQ+ +YE G+N++ L I+++L Sbjct: 1 MDIHSIIGTRIKNRRKELGLSGANLASKLNLSQQQISRYENGINKIPIDHLLDIADILMC 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMD 93 PI +FF +D ++ + Sbjct: 61 PIEWFFKGYKNEDNDNEQVPFDITN 85 >gi|226322751|ref|ZP_03798269.1| hypothetical protein COPCOM_00523 [Coprococcus comes ATCC 27758] gi|225208912|gb|EEG91266.1| hypothetical protein COPCOM_00523 [Coprococcus comes ATCC 27758] Length = 313 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 49/127 (38%), Gaps = 13/127 (10%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK +G ++ R ++QE+L E ++ + V ++E G+N S L Sbjct: 1 MDTKK--------IGAFLKQCRKEKNLTQEQLAEKFEVSARTVSRWETGINMPDLSILVQ 52 Query: 62 ISEVLESPISFFFDVSPT-----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++E + I D + + + +++ N F + + V Sbjct: 53 LAEYYDVEIRELLDGERSQTMNKEMKETLDKVAVYEEWVKQKALKAGNLAFASMFVISVL 112 Query: 117 QKIIELV 123 II+++ Sbjct: 113 AIIIQML 119 >gi|296491936|ref|YP_003662403.1| hypothetical protein XNC1_p0124 [Xenorhabdus nematophila ATCC 19061] gi|289176823|emb|CBJ92992.1| hypothetical protein XNC1_p0124 [Xenorhabdus nematophila ATCC 19061] Length = 291 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 9/83 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ +G+RIR+RR L ++ + L + G+ Q + +YE G R+ ++ L Sbjct: 197 MMAKN---------IGQRIRVRRKKLNVTLQGLAKQAGMNQQTLSRYETGKKRITSTDLV 247 Query: 61 HISEVLESPISFFFDVSPTVCSD 83 I+ L +PI +FF ++ D Sbjct: 248 IIAIALNTPIDWFFIDYSSLDDD 270 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 5/123 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V N+G RI++ R + ++ LG +G++ QQ+ + E G NR+ L +I+ L P Sbjct: 103 AVTKNIGLRIQIWRKTMMLTAAALGLSVGLSQQQISRNEHGKNRIHIDHLVNIALALGIP 162 Query: 70 ISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV-KVRQKIIEL-VRSI 126 IS+FF D P + + SS I L++ I +VR+K + + ++ + Sbjct: 163 ISWFFIDCHPDLEVNTSSHLPTTPTKIMDKPELEMM--AKNIGQRIRVRRKKLNVTLQGL 220 Query: 127 VSS 129 Sbjct: 221 AKQ 223 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 39/71 (54%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + + ++G+R+ +RR G+S L + GI+ Q+ YE G++ + S L IS Sbjct: 2 DKAMLDVFFKSIGQRVCIRRKEAGLSTHTLAQHTGISEAQLIMYETGLDDIPLSHLIQIS 61 Query: 64 EVLESPISFFF 74 L +P +FF Sbjct: 62 AGLNTPTGWFF 72 >gi|240851232|ref|YP_002972635.1| transcriptional regulator [Bartonella grahamii as4aup] gi|240268355|gb|ACS51943.1| transcriptional regulator [Bartonella grahamii as4aup] Length = 116 Score = 57.9 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 42/101 (41%), Positives = 63/101 (62%), Gaps = 4/101 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +GK+IRL+R +L MSQ+ LG+ LG+TFQQ+QKYEKG+NRV A RL IS++L P+ Sbjct: 8 IDLFIGKKIRLKRKMLKMSQKTLGQHLGVTFQQIQKYEKGLNRVSAGRLMEISDILNVPL 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 SFF+ T + + S+ + L + F + Sbjct: 68 SFFYADIITKKQP----PYHHDEIASSTEEYLLLKRFRTLT 104 >gi|260185332|ref|ZP_05762806.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis CPHL_A] gi|289446007|ref|ZP_06435751.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289418965|gb|EFD16166.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] Length = 474 Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D D ++ + + ++ L R + + Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSA--HPGLARAVVNLHRRYRITTAQL 122 Query: 134 RTIEEE 139 EE Sbjct: 123 AAATEE 128 >gi|293570008|ref|ZP_06681088.1| transcriptional regulator, putative [Enterococcus faecium E1071] gi|291587380|gb|EFF19264.1| transcriptional regulator, putative [Enterococcus faecium E1071] Length = 154 Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 31/76 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R ++QE+L L ++ Q + +E+G ++ L ++ + +S+ D Sbjct: 3 NRLRNLRKKNNLTQEELSLQLKVSRQTISNWERGFSQPDLENLHLLASFFKVTVSYLIDG 62 Query: 77 SPTVCSDISSEENNVM 92 + E Sbjct: 63 DTIPDASPIYEAKQPQ 78 >gi|146302466|ref|YP_001197057.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156884|gb|ABQ07738.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 132 Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 7/130 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+ I R + GM Q L + +G + Q + E V +L I++ L + Sbjct: 8 KHIGRNISRIRELRGMKQGALADAIGTSQQTISSIETSE-TVDFDKLVQIAKALGVTVEA 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + + + + + Q+N F K++EL +V +EK Sbjct: 67 IENFTEESVFNFFNNFYDN-----SANHGQVNGPFNSCT-FNALDKVVELYERLVQAEKD 120 Query: 133 YRTIEEECMV 142 E+ M Sbjct: 121 KVEYLEKLMK 130 >gi|289579057|ref|YP_003477684.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289528770|gb|ADD03122.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 182 Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+++ R G++ +++GE +G++ KYEK L I++ + + F Sbjct: 1 MIGDRLKMLRKEKGLTMKEIGEIIGVSDAAWTKYEKNRAEPSIESLIKIADYFQVSLDFL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + E N +F+ + +I D ++ LV ++ +S +KY Sbjct: 61 LGRTNIREPQFVEEANIQSEFLKEFEW-------SKIGDPS---QMYFLVENLSTSIRKY 110 Query: 134 RT 135 Sbjct: 111 NE 112 >gi|319937527|ref|ZP_08011932.1| hypothetical protein HMPREF9488_02768 [Coprobacillus sp. 29_1] gi|319807367|gb|EFW03976.1| hypothetical protein HMPREF9488_02768 [Coprobacillus sp. 29_1] Length = 182 Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ +SQE + + L ++ Q V K+EKG+++ L +SE+ + Sbjct: 1 MFIGEKIRELRIRNQLSQESIAQLLDVSRQSVSKWEKGLSKPSTDNLLRLSEIFSVSVED 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 D D + +F+ L F+ + Sbjct: 61 LIDNDIQFKKDY-ESTSFFKEFLFRKKVLIPISIFLGL 97 >gi|326390754|ref|ZP_08212307.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993148|gb|EGD51587.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 130 Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 8/117 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD-- 75 R++ R ++Q L + LGI+ + YE L+ I++ I + Sbjct: 6 RLKELRKEKNLTQGDLAKILGISRSTIAGYETERKEPDYETLKKIADFFNVSIDYLLGRT 65 Query: 76 ------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 T E + + + L+L + K ++II ++++I Sbjct: 66 DIRSPVDEITEAVSDDPELFEFWNTLKEREDLKLLFKQTKKLSPKDIKQIIRIIKAI 122 >gi|268592288|ref|ZP_06126509.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291312067|gb|EFE52520.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 92 Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 39/75 (52%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV +G +I+ R G+S L + +GI+ QQ +YE+G NR+ RL+ S + Sbjct: 6 PVSAVIGNKIKSLRKNKGLSLTALAKTVGISEQQQLRYERGNNRISIDRLKQYSNYFDIN 65 Query: 70 ISFFFDVSPTVCSDI 84 I +FF S + I Sbjct: 66 IIYFFSFSEDEKTKI 80 >gi|215409982|ref|ZP_03418790.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|215444567|ref|ZP_03431319.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|289756539|ref|ZP_06515917.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|294995970|ref|ZP_06801661.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 210] gi|298523942|ref|ZP_07011351.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|289712103|gb|EFD76115.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|298493736|gb|EFI29030.1| transcriptional regulatory protein [Mycobacterium tuberculosis 94_M4241A] gi|326902291|gb|EGE49224.1| transcriptional regulator [Mycobacterium tuberculosis W-148] Length = 474 Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D D ++ + + ++ L R + + Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSA--HPGLARAVVNLHRRYRITTAQL 122 Query: 134 RTIEEE 139 EE Sbjct: 123 AAATEE 128 >gi|253987942|ref|YP_003039298.1| transcription regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779392|emb|CAQ82553.1| similar to transcription regulator and to restriction enzyme contro elements [Photorhabdus asymbiotica] Length = 78 Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 35/77 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN + G+R+R R GMSQE + GI + E+G+ + I+ Sbjct: 2 KKPNAIKSLFGQRVRHLRQSSGMSQEAFADKCGIDRTYISGIERGIRNPTLEVINIIASG 61 Query: 66 LESPISFFFDVSPTVCS 82 L+ ++ FD S + + Sbjct: 62 LQIELTDLFDFSTELKN 78 >gi|229827500|ref|ZP_04453569.1| hypothetical protein GCWU000182_02889 [Abiotrophia defectiva ATCC 49176] gi|229788438|gb|EEP24552.1| hypothetical protein GCWU000182_02889 [Abiotrophia defectiva ATCC 49176] Length = 217 Score = 57.5 bits (137), Expect = 5e-07, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 31/65 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R G +QE++ E LG++ Q + +E + + +S++ + + + Sbjct: 1 MEIGSKIKKSRTEAGFTQEQVAESLGVSRQTISNWENEKSYPDIISVLKMSDLFKVSLDY 60 Query: 73 FFDVS 77 Sbjct: 61 LLKGE 65 >gi|42518326|ref|NP_964256.1| hypothetical protein LJ0240 [Lactobacillus johnsonii NCC 533] gi|41582610|gb|AAS08222.1| hypothetical protein LJ_0240 [Lactobacillus johnsonii NCC 533] Length = 341 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 10/132 (7%) Query: 1 MVGNK-KIPN---PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 M+ NK K N + + +G++I R +SQE L E + ++ Q V K+E + Sbjct: 1 MIFNKLKSINNERTIHMRLGQKITELRKKNNLSQEGLAEKMNVSRQAVSKWESDQSIPDI 60 Query: 57 SRLQHISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 ++ +SE+ + +P+ + I L + + + K Sbjct: 61 EKIVSLSELFGVTTDYLLKSGAPSFEIKTADIPAEDKSPILPDK---LVQKY--LSTAKK 115 Query: 116 RQKIIELVRSIV 127 K+ L ++ Sbjct: 116 SSKLRALSIALA 127 >gi|225375055|ref|ZP_03752276.1| hypothetical protein ROSEINA2194_00678 [Roseburia inulinivorans DSM 16841] gi|225213127|gb|EEG95481.1| hypothetical protein ROSEINA2194_00678 [Roseburia inulinivorans DSM 16841] Length = 305 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 44/92 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK IR +R+ GM+Q++L E + +T + V ++E G S L+ ++E L ++ Sbjct: 6 IGKYIRKKRIEKGMTQQQLAEKIQVTEKAVSRWETGRGVPDISLLEPLAEELHVSVTELL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + V + + M I + ++ + Sbjct: 66 NGEERVQEEAVHDTKAHMADIDITNVIEYVQE 97 >gi|215402217|ref|ZP_03414398.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289744162|ref|ZP_06503540.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289684690|gb|EFD52178.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] Length = 474 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D D ++ + + ++ L R + + Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSA--HPGLARAVVNLHRRYRITTAQL 122 Query: 134 RTIEEE 139 EE Sbjct: 123 AAATEE 128 >gi|297617997|ref|YP_003703156.1| XRE family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145834|gb|ADI02591.1| transcriptional regulator, XRE family [Syntrophothermus lipocalidus DSM 12680] Length = 216 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 46/110 (41%), Gaps = 8/110 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RI+ R G++QE+LG+ L + + KYEKG + L+ +++ + + Sbjct: 4 VGSRIKQLREERGLTQEQLGKILNVQKAAISKYEKGHTLPDSEALKKLAKFFNVSVDYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 ++ T ++ + + V++ I++++ Sbjct: 64 CLTDTREP--------FDTKVTANVSYESAEKSSRGITNNVKRSFIDMLK 105 >gi|223985675|ref|ZP_03635723.1| hypothetical protein HOLDEFILI_03029 [Holdemania filiformis DSM 12042] gi|223962366|gb|EEF66830.1| hypothetical protein HOLDEFILI_03029 [Holdemania filiformis DSM 12042] Length = 283 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 44/90 (48%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K + N + G+ IR R+ G +Q++LG +GI+ + + K+E+G++ + L Sbjct: 5 MTEDKIMQNLTEERTGQLIRELRLKAGWTQKELGMKIGISDKAISKWERGLSFPDITLLP 64 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN 90 ++EV + ++ E+ + Sbjct: 65 RLAEVFHVSVGEIISGQQLSEPALNPEQLD 94 >gi|329847523|ref|ZP_08262551.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328842586|gb|EGF92155.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 469 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 2/133 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R L +SQ ++ E LG++ + E+ V A L ++ + + Sbjct: 8 LFLGGRLKRLRYDLNLSQTQMAEDLGVSPSYLNHLERNQRPVTAQVLLKLAATYDLDLRT 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F D S E F + + + I L R+ +K+ Sbjct: 68 FTDDSEPSGEADLVEIFADPLFKDLRLPRREISELVA-SSPMTAEAITRLYRAYTERKKR 126 Query: 133 YR-TIEEECMVEQ 144 I EE V+Q Sbjct: 127 DILAIAEEDSVDQ 139 >gi|154500477|ref|ZP_02038515.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC 29799] gi|150270708|gb|EDM98004.1| hypothetical protein BACCAP_04149 [Bacteroides capillosus ATCC 29799] Length = 259 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R G+SQE+L +G++ Q VQK+E G ++ L ISE + + Sbjct: 4 ERLYQLRRERGISQEELANIIGVSRQAVQKWESGASQPNIDNLVAISEYFGVTLDYLLKG 63 Query: 77 SPTVCSDIS 85 + Sbjct: 64 DEPGWEESD 72 >gi|294013107|ref|YP_003546567.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676437|dbj|BAI97955.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 471 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 57/133 (42%), Gaps = 15/133 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++K + +G ++R+ R LG++Q ++ E LG++ + E+ + A L Sbjct: 1 MADDRK------LYLGPKLRVLRRELGLNQTRMAEELGVSPSYLNHLERNQRPLTAQMLL 54 Query: 61 HISEVLESPISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ V + I F + + + S+I S+ I+ + L++ + V Sbjct: 55 RLANVYDIDIRDFVASTQEGAASALSEILSDALVRDIGIARDEVLEVAENY-----PGVS 109 Query: 117 QKIIELVRSIVSS 129 + I R++ Sbjct: 110 EAIGRFYRALSDL 122 >gi|255280273|ref|ZP_05344828.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255269364|gb|EET62569.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 421 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + NKK G + RR LGM+Q++ L +T V K+E+G++ + ++ Sbjct: 8 MENKKT-------FGAFVLRRRKELGMTQKEFAARLYVTESAVSKWERGMSYPDITLIRS 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 I VLE S S + ++ L + I Sbjct: 61 ICSVLEVSEHELLTGSEDTEKRTSEKLAEKYLRLTRNYRLAQYLLYGAI 109 >gi|319746123|gb|EFV98396.1| prophage Sa05 protein [Streptococcus agalactiae ATCC 13813] Length = 164 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 44/103 (42%), Gaps = 4/103 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q+ L + +G+ F+ +Q +E G + + + Q +++ + + Sbjct: 2 NRLKELRKEKGLTQQGLADDIGVHFRTLQNWENGKADIKSDKAQALADYFNVSVGYLLGY 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 S + I N + D + L + + + +K+ Sbjct: 62 SDDLDLFIHGNLNELEDLPTVKVITNL----HFLTNPEEIEKL 100 >gi|260663657|ref|ZP_05864546.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|260551883|gb|EEX24998.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 115 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 44/112 (39%), Gaps = 9/112 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R +SQ LG+ +G++ V +E ++ + ++E+ E + Sbjct: 12 VMIGARIKHLRKGRNLSQAMLGKYIGVSQTTVTAWETNRTEPSSTYVTKLAELFEVSTDY 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 D ++ ++ + + ++ + R I +L+ Sbjct: 72 LLDHERSIRQPVTVDLADENVNLTYRG---------RPLSRNDRNIIYQLME 114 >gi|31791644|ref|NP_854137.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|31617230|emb|CAD93337.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis AF2122/97] Length = 474 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLDQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D D ++ + + ++ L R + + Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSA--HPGLARAVVNLHRRYRITTAQL 122 Query: 134 RTIEEE 139 EE Sbjct: 123 AAATEE 128 >gi|149924308|ref|ZP_01912679.1| transcriptional regulator, XRE family protein [Plesiocystis pacifica SIR-1] gi|149814844|gb|EDM74411.1| transcriptional regulator, XRE family protein [Plesiocystis pacifica SIR-1] Length = 494 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 5/126 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R +R GM+Q +L LGI+ + E + A L ++ + F Sbjct: 16 LGSKVRAKRRARGMTQAELARRLGISASYLNLIEHNQRPLRAELLLSLAREFGLGLDDFA 75 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 E + F P R V + ++ L ++ R Sbjct: 76 SDDDHRLGAHLLEAFSDPLFEEHPLNSAEVRELAS-TSPAVARAVLTLYEQY----QRAR 130 Query: 135 TIEEEC 140 E Sbjct: 131 NSLAEL 136 >gi|299534219|ref|ZP_07047570.1| transcriptional regulator, XRE family protein [Comamonas testosteroni S44] gi|298717866|gb|EFI58872.1| transcriptional regulator, XRE family protein [Comamonas testosteroni S44] Length = 490 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 45/118 (38%), Gaps = 4/118 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L + L ++ + + E+ + + L I VL I F + Sbjct: 2 GVRLRSLRAERGLTQAALAQALELSPSYLNQIEQDQRPLTVAVLLKIHRVLGVDIQQFSE 61 Query: 76 VSPTVCSDISSEE-NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS-IVSSEK 131 + + + +L ++ ++ Q ++ + + + +E+ Sbjct: 62 DEEARLLAQLRDAVAAMPQPEGSVPLPELREVAAKL--PQLAQMLLAMHQRHLADAER 117 >gi|290509145|ref|ZP_06548516.1| conserved hypothetical DNA-binding protein [Klebsiella sp. 1_1_55] gi|289778539|gb|EFD86536.1| conserved hypothetical DNA-binding protein [Klebsiella sp. 1_1_55] Length = 200 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 40/112 (35%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I N V+ V +RI+ R +S ++L G++ + + E + L Sbjct: 8 MTDANAIVNTVNEAVSQRIKQYRKQKKISLDELSRRAGVSKGALVEIEGCRANPSIALLC 67 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 ++ + ++ F DVS + +E+ + G D Sbjct: 68 RLATAMGVSVADFVDVSSKPTVHLIAEDEIPELWEGEKGGRARLLAGSGGPD 119 >gi|312114583|ref|YP_004012179.1| XRE family transcriptional regulator [Rhodomicrobium vannielii ATCC 17100] gi|311219712|gb|ADP71080.1| transcriptional regulator, XRE family [Rhodomicrobium vannielii ATCC 17100] Length = 477 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 43/128 (33%), Gaps = 2/128 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG +++ R G++Q E +G++ + + EK + L I+ + + Sbjct: 4 VFVGVKLKRLREERGLTQIAFAEAIGLSASYLNQLEKNQRPLTVPVLLRINATFGADMQL 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D E + T ++ + + I+ L R + ++ Sbjct: 64 LSDGDEARMIADLKEVFSDPASGETVSLAEIREIAASM--PAAGRAIVALHRRLRHVTER 121 Query: 133 YRTIEEEC 140 + E Sbjct: 122 GDAMAHEL 129 >gi|264677406|ref|YP_003277312.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262207918|gb|ACY32016.1| transcriptional regulator, XRE family [Comamonas testosteroni CNB-2] Length = 490 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 45/118 (38%), Gaps = 4/118 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L + L ++ + + E+ + + L I VL I F + Sbjct: 2 GVRLRSLRAERGLTQAALAQALELSPSYLNQIEQDQRPLTVAVLLKIHRVLGVDIQQFSE 61 Query: 76 VSPTVCSDISSEE-NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS-IVSSEK 131 + + + +L ++ ++ Q ++ + + + +E+ Sbjct: 62 DEEARLLAQLRDAVAAMPQPEGSVPLPELREVAAKL--PQLAQMLLAMHQRHLADAER 117 >gi|126731204|ref|ZP_01747012.1| transcriptional regulator, XRE family protein [Sagittula stellata E-37] gi|126708506|gb|EBA07564.1| transcriptional regulator, XRE family protein [Sagittula stellata E-37] Length = 464 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 41/119 (34%), Gaps = 2/119 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R+ G +Q ++ + LGI+ V EK V L + E Sbjct: 4 FIGPRLRRLRIEHGQTQVQMAKELGISTSYVNLLEKNERSVSVPVLLKLFEAYGVDWRDI 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS-IVSSEK 131 + T F L R + + Q + L R+ + ++++ Sbjct: 64 AEDDDTAALADIRAALQDPLFEGHRPDLPQLRASLA-HSPDLAQAFVMLHRAYLAATDQ 121 >gi|121636380|ref|YP_976603.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988852|ref|YP_002643539.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|121492027|emb|CAL70490.1| Probable transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771965|dbj|BAH24771.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 474 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLDQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D D ++ + + ++ L R + + Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSA--HPGLARAVVNLHRRYRITTAQL 122 Query: 134 RTIEEE 139 EE Sbjct: 123 AAATEE 128 >gi|312862721|ref|ZP_07722961.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|322516899|ref|ZP_08069796.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|311101581|gb|EFQ59784.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|322124522|gb|EFX96004.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 229 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 48/119 (40%), Gaps = 25/119 (21%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R GMSQ + + LGI+ +E G + L ++E+ ++F Sbjct: 4 GQRLKEIREAQGMSQAAVAKHLGISRSSYFNWENGKTKPNQKNLSILAELFGVAETYFLS 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 ++ ++++ + + RQ+ + L ++++ ++ + Sbjct: 64 E------------------------HEIVEVYLEL-NEENRQEALRLTKALLEEQEAEK 97 >gi|310659741|ref|YP_003937462.1| BcrR protein [Clostridium sticklandii DSM 519] gi|308826519|emb|CBH22557.1| BcrR [Clostridium sticklandii] Length = 203 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R +QE+L E L I+ V K+E G L++IS + + I Sbjct: 1 MELGEKLQQLRKQNNWTQEQLAEQLYISRTAVSKWESGKGYPSIDSLKNISALFKISIDD 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 V + + NV + Sbjct: 61 LLSGDELVQLATNENKENVENI 82 >gi|262201416|ref|YP_003272624.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084763|gb|ACY20731.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 93 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 1/85 (1%) Query: 1 MVGNKKIP-NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N K PV + G+RIR RR LG+SQE +GI + Q+ K E+G V + Sbjct: 6 MSENAKSALKPVLVEFGRRIRARREELGLSQEAAAVSIGIHWTQLGKVERGQRSVRVENI 65 Query: 60 QHISEVLESPISFFFDVSPTVCSDI 84 I+ L + D D Sbjct: 66 VKIAAGLSTTPGALLDGISAHVGDN 90 >gi|302382805|ref|YP_003818628.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302193433|gb|ADL01005.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 475 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 45/127 (35%), Gaps = 2/127 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R G++Q + LG++ + E+ V A L +++ + + Sbjct: 9 LFLGARVKRLRRDRGLTQTAMAGDLGVSPSYLNHIERNQRPVSAQLLLRLADAYDVDLRT 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 +D++ + + +L + + I+ L R+ K Sbjct: 69 LGQTGAAGEADLAEVLADPLFKGLEVPRHELVQLVDDAPGAA--EAIVRLYRAFSEQRDK 126 Query: 133 YRTIEEE 139 R E Sbjct: 127 TRAALIE 133 >gi|262201756|ref|YP_003272964.1| hypothetical protein Gbro_1813 [Gordonia bronchialis DSM 43247] gi|262085103|gb|ACY21071.1| Protein of unknown function DUF2083,transcriptional regulator [Gordonia bronchialis DSM 43247] Length = 474 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 44/123 (35%), Gaps = 2/123 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R+R R G+SQ L + ++ V + E + L ++ + + Sbjct: 1 MFIGARLRRLRDERGLSQAGLARRVELSTSYVNQLENDQRPITVPVLLTLTREFDLDADY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F ++ ++ ++ V + ++ + R +++++ + Sbjct: 61 FAPDGDARLVADLADVLTAQPDSGEVTRAEITELVARM--PAVGRTLVGMHRRLIAADTE 118 Query: 133 YRT 135 + Sbjct: 119 LES 121 >gi|288871456|ref|ZP_06117657.2| DNA-binding protein [Clostridium hathewayi DSM 13479] gi|288863406|gb|EFC95704.1| DNA-binding protein [Clostridium hathewayi DSM 13479] Length = 222 Score = 57.5 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 43/94 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + +D+++G+ I+ +R L +SQE + E LG++ Q V K+E ++ A L ++ V Sbjct: 16 RAKEAIDMSLGENIKTKRNELKLSQEYVAEQLGVSRQAVSKWETDQSQPKAKNLTELATV 75 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 +S + + E + ++ Sbjct: 76 FHVGLSGLVEPQKYQAEQAAQENEWRENRNNSKM 109 >gi|288935075|ref|YP_003439134.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|288889784|gb|ADC58102.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] Length = 200 Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 40/112 (35%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I N V+ V +RI+ R +S ++L G++ + + E + L Sbjct: 8 MTDANAIVNTVNEAVSQRIKQYRKQKKISLDELSRRAGVSKGALVEIEGCRANPSIALLC 67 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 ++ + ++ F DVS + +E+ + G D Sbjct: 68 RLATAMGVSVADFVDVSSKPTVHLIAEDEIPELWEGEKGGRARLLAGSGGPD 119 >gi|56962989|ref|YP_174716.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56909228|dbj|BAD63755.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 135 Score = 57.5 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 36/89 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +++ R G SQE+L + L ++ Q V K+E + +SE+ + + Sbjct: 5 GSKLKQLREEQGFSQEQLAKELNVSRQAVWKWETDKGLPDIQNIVRLSELFDVSTDYLLK 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLN 104 S + S + + I G+ L Sbjct: 65 ESELIAEPTPSRKWDSEQDIGFYLGMILI 93 >gi|213019906|ref|ZP_03335697.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994507|gb|EEB55164.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 314 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 13/130 (10%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GK+I+ R++ G +Q+ L E + T ++ YE+G + +L I+E L Sbjct: 167 SIYCQIGKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSIN 226 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVS 128 I +++ + +E N L + +I+ ++R +I+ L SI Sbjct: 227 IMDLLELTEDADDKVENELPN------------LIEEYKEIESQELRYALIKFLFESIQI 274 Query: 129 SEKKYRTIEE 138 E+K + +E+ Sbjct: 275 CEEKVKRVEK 284 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 10/115 (8%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + +++R R+ G +Q+ L +G+T+Q V +YEKG+ ++ +L I++VL Sbjct: 14 SIRYQIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGIRKISIEKLYAIAKVLSVD 73 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 I I + + L L R + +I+D ++R+ L + Sbjct: 74 IIDL----------IPVSNEKICLEDEEEEILDLVREYKKINDQELRKMFCLLTK 118 >gi|302342128|ref|YP_003806657.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301638741|gb|ADK84063.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM 2075] Length = 432 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 35/92 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ R G+SQ L + +G+T + + E L ++EVL I+ FF Sbjct: 253 LGKRIKELRGKKGLSQTDLAKMVGVTPSTISQVESNHIYPSLPALIKMAEVLSVEIASFF 312 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + + ++ R Sbjct: 313 NDGAEDRQRVVFSAEEAVEVKLVDMPAGAVRA 344 >gi|289748952|ref|ZP_06508330.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289689539|gb|EFD56968.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length = 341 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 47 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 106 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D D ++ + + ++ L R + + Sbjct: 107 ASQDDTRLVAELREVTLDRDLDIAIDQHEVAEMVSA--HPGLARAVVNLHRRYRITTARL 164 Query: 134 RTIEEE 139 EE Sbjct: 165 AAATEE 170 >gi|295400956|ref|ZP_06810931.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294976958|gb|EFG52561.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 139 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 50/130 (38%), Gaps = 6/130 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++++ R +QE+L + L I+ Q+ K+E G L+ +S + E I F Sbjct: 5 RKLGEKLKYLRKQHNWTQEQLAQHLNISRSQISKWENGELLPDVQSLEKLSNLYEVSIDF 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 T + L + YF Q D++ E++ S+ K Sbjct: 65 LIGKHTTKKELLREMNLLYQTDRIDEKMLDIIDYFKQNPDME------EMMYSLAQLPAK 118 Query: 133 YRTIEEECMV 142 R E ++ Sbjct: 119 KRKHLETIII 128 >gi|300933761|ref|ZP_07149017.1| putative transcriptional regulator RamB [Corynebacterium resistens DSM 45100] Length = 497 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 16/132 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R+R R +SQ +L E LGI+ V + E + + L ++ +F Sbjct: 6 VFVGSRLRELRKDRSLSQAQLAEKLGISASYVNQIEHNSRPLTLAVLDKLTATFGVDATF 65 Query: 73 FFDVSPTV----CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 F T D+ + + + L + L R++V Sbjct: 66 FSRGDATRLLAEVQDVVHDREVCPTPVDVAELADLVKNHPT------------LARAMVE 113 Query: 129 SEKKYRTIEEEC 140 +YR + ++ Sbjct: 114 MHSRYRNVSDKL 125 >gi|289449565|ref|YP_003474504.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184112|gb|ADC90537.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 210 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 2/105 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKMIADALGVTVDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 D + I + ++ + R I+I + VR Sbjct: 61 LLDKDNAIDLSIIKKPIDLAKYALNAKLG--VRKKIKIKEQIVRD 103 >gi|150378104|ref|YP_001314699.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032651|gb|ABR64766.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 139 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 10/126 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G I R I G+SQ++LG+ +G+TFQQV+KYE G +R+ + +L + + ++ Sbjct: 11 DAALGTNICRFREISGISQKELGDAIGVTFQQVRKYESGKDRISSKKLVETARTIGCDLN 70 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + I ++ + + L+L F I + R I L + S Sbjct: 71 SLYAG-------IGIDDATLAFLDHSRAALKLAANFDGIASSEERAAIALL---LAGSPP 120 Query: 132 KYRTIE 137 K + Sbjct: 121 KKNKPQ 126 >gi|307293728|ref|ZP_07573572.1| transcriptional regulator, XRE family [Sphingobium chlorophenolicum L-1] gi|306879879|gb|EFN11096.1| transcriptional regulator, XRE family [Sphingobium chlorophenolicum L-1] Length = 467 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 56/133 (42%), Gaps = 15/133 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++K + +G ++R+ R LG++Q ++ E LG++ + E+ + A L Sbjct: 1 MADDRK------LYLGPKLRVLRRELGLNQTRMAEELGVSPSYLNHLERNQRPLTAQMLL 54 Query: 61 HISEVLESPISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ V + I F + + + +I S+ ++ + L++ + V Sbjct: 55 RLANVYDIDIRDFVASTQEGAASALGEILSDALVRDIGVARDEVLEVAENY-----PGVS 109 Query: 117 QKIIELVRSIVSS 129 + I R++ Sbjct: 110 EAIGRFYRALSDL 122 >gi|163869145|ref|YP_001610384.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018831|emb|CAK02389.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 82 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 41/66 (62%), Positives = 50/66 (75%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGK+IRLRR +L MSQ LG LGI+FQQ+QKYEKG+NRV A RL IS++L PI Sbjct: 8 IDLFVGKKIRLRRQMLKMSQTTLGNALGISFQQIQKYEKGLNRVSAGRLMEISDILTVPI 67 Query: 71 SFFFDV 76 SFF Sbjct: 68 SFFLCG 73 >gi|146302601|ref|YP_001197192.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146157019|gb|ABQ07873.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 133 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 7/129 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+G+ I R + GM Q L + +G + Q + E V +L I++ L + Sbjct: 8 RNIGRNISRIRELRGMKQGALADAIGTSQQTISSIETSE-TVDFDKLVEIAKALGVTVEA 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + + + +N F + K+IEL +V +EK+ Sbjct: 67 IENFTEESVFNFFNNFYDNSSSQGNSFNQGMNATFNPL------DKVIELYERLVQAEKE 120 Query: 133 YRTIEEECM 141 E+ + Sbjct: 121 KVEYLEKLL 129 >gi|237735081|ref|ZP_04565562.1| predicted protein [Mollicutes bacterium D7] gi|229381857|gb|EEO31948.1| predicted protein [Coprobacillus sp. D7] Length = 367 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 40/90 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK++ R G+SQE LG L ++ Q V K+E ++ + IS+ E I+ Sbjct: 1 MSIGKKLLSLRQEKGISQEALGRELNVSRQTVSKWESDLSLPDMKMMITISQFYEISITQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 D+ +D ++ + + Sbjct: 61 LLDLDDETEADSINKIYEQTSLVLENLQKE 90 >gi|319936228|ref|ZP_08010648.1| HTH domain-containing protein [Coprobacillus sp. 29_1] gi|319808802|gb|EFW05335.1| HTH domain-containing protein [Coprobacillus sp. 29_1] Length = 151 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 38/93 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI GK+IR R GM+QE+L L +T Q + +E+ VN + L+ I + + Sbjct: 7 DITTGKQIRHLRTQAGMTQEELARELNVTRQALSNWERDVNEPDLNMLKKICFLFGVYMD 66 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F T +E + GL Sbjct: 67 DFAKGVITKMETYEKKEKQQFNRYDMAIGLFYA 99 >gi|329889919|ref|ZP_08268262.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845220|gb|EGF94784.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 143 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 13/137 (9%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + +G+RIR RR LG SQ LG +G++FQQ+QKYEKG+N + A RL Sbjct: 1 MTELQAKLDYNRAIGRRIRDRRKALGFSQAALGSKVGLSFQQIQKYEKGLNGLAAVRLGQ 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ L + + + S +L + + ++ + R+ ++ Sbjct: 61 LALALATTVPRLLGLGEED------------HPASDEQRHRLLQAWERLTQAQ-REPLLR 107 Query: 122 LVRSIVSSEKKYRTIEE 138 V ++ S T E Sbjct: 108 YVEALALSPSSATTAVE 124 >gi|307153159|ref|YP_003888543.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7822] gi|306983387|gb|ADN15268.1| transcriptional regulator of molybdate metabolism, XRE family [Cyanothece sp. PCC 7822] Length = 377 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 8/116 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D + I+ R LG+SQ+ L + G++ Q + E G A+ +++ L + Sbjct: 4 DKELRNNIKQIRTRLGLSQQDLAQVAGVSRQAISGVESGQYAPSATVALRLAKALGCRVE 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR------YFIQIDDVKVRQKIIE 121 F + + + + P L L + I + R +II Sbjct: 64 DLFWLEDDDA--VIEAQPTESVPMGQPFRLSLAQVGGQLVAHPLIQEDAFRTEIIA 117 >gi|42520374|ref|NP_966289.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410112|gb|AAS14223.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 312 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 11/139 (7%) Query: 1 MVGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K N +D +G+ +R RR+ G +Q+ L + + T+Q + +YEKG R+ +L Sbjct: 1 MKKENKCSNFLDYKVIGQEVRNRRLAKGYTQKDLAKKIDTTYQVILQYEKGTRRISIKKL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 ++E L + + EE L L R +I D ++R+ Sbjct: 61 YELAEALSTTARDLACGQEVSNEERYEEEE----------ILNLVRRHKEIKDQELRETF 110 Query: 120 IELVRSIVSSEKKYRTIEE 138 L + I SE++ + Sbjct: 111 YLLTKFIRISEEESGKAVK 129 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 14/125 (11%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N + + VG+RI+ R+ G +QE L +GI Q++ +YE+G V L I Sbjct: 158 DNDEKKISIPYKVGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRAAVSLEMLNEI 217 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE- 121 ++VL I+ + + + +L + +I ++R +I+ Sbjct: 218 AKVLLINITDLLPETRENENSEAELS-------------RLIEEYKKIKSQELRDVLIKS 264 Query: 122 LVRSI 126 L+ SI Sbjct: 265 LLESI 269 >gi|322373053|ref|ZP_08047589.1| putative repressor protein [Streptococcus sp. C150] gi|321278095|gb|EFX55164.1| putative repressor protein [Streptococcus sp. C150] Length = 229 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 48/119 (40%), Gaps = 25/119 (21%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R GMSQ + + LGI+ +E G + L ++E+ ++F Sbjct: 4 GQRLKEIREAQGMSQAAVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 ++ ++++ + + RQ+ + L ++++ ++ + Sbjct: 64 E------------------------HEIVEVYLEL-NEENRQEALRLTKALLEEQEAEK 97 >gi|317484142|ref|ZP_07943072.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924646|gb|EFV45802.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 108 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 38/93 (40%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K N VD+ G R+R +SQ + +G++ ++ Y + + L I+ Sbjct: 5 KPENVVDVLFGNRLRQLLDERNISQAHFADRIGVSRSRMNNYVAQRSEPDYATLIRIANT 64 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 L++ I F S ++ + DFI + Sbjct: 65 LDTTIDFLLGKSEHQGLPQTACLSGFPDFIPSR 97 >gi|188590232|ref|YP_001921142.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska E43] gi|188500513|gb|ACD53649.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska E43] Length = 134 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 5/130 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ R ++Q LG LG+ + YE G + I+ + + + Sbjct: 4 LADRIKDLRKSKKLTQTDLGRILGVGKTTISMYENGNSTPNDEIKFKIAAFFDVTLDYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK-----IIELVRSIVSS 129 S D + + +TP +L +DD ++ +++L S+ S Sbjct: 64 GKSDIKKYDDVLSIDKQDNTQNTPIEDKLIEKLKNLDDESKKELEKYMDLLKLKESMGES 123 Query: 130 EKKYRTIEEE 139 + + + ++ Sbjct: 124 KNETPSSLKQ 133 >gi|48527206|gb|AAT45743.1| putative Cro/CI family trancriptional regulator [Rhizobium etli] Length = 76 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 38/65 (58%), Positives = 46/65 (70%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+PVDI VG+ IR R I +SQ LGE LG+TFQQ+QKYEKG NRV AS+L I+ L Sbjct: 1 MPDPVDIIVGRNIRQLRAIRRVSQLDLGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFL 60 Query: 67 ESPIS 71 IS Sbjct: 61 GVEIS 65 >gi|89901996|ref|YP_524467.1| transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346733|gb|ABD70936.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodoferax ferrireducens T118] Length = 201 Score = 57.1 bits (136), Expect = 7e-07, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 53/143 (37%), Gaps = 4/143 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++ P+ + +G+RIR +R LG + E+ + G+ + K E G+ L Sbjct: 1 MNDQSEPSSSEALLGQRIRAQRSQLGWTLEQTSQATGLARSTLSKIENGLMSPTYDALIK 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP---DGLQLNRYFIQIDDVKVRQK 118 ++ L+ IS F+ + + S L + D+ + Sbjct: 61 LATGLQIDISELFEPNKNISGSGRRSITRKGSGQSHHTPYYDHTLLCNDMSNKDMIPFKT 120 Query: 119 IIELVRSIVSSEKKYRTIEEECM 141 I L RS E R EE + Sbjct: 121 RI-LARSFDDFEDWSRHTGEEFV 142 >gi|53718202|ref|YP_107188.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|167737073|ref|ZP_02409847.1| putative DNA-binding protein [Burkholderia pseudomallei 14] gi|167814187|ref|ZP_02445867.1| putative DNA-binding protein [Burkholderia pseudomallei 91] gi|52208616|emb|CAH34552.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] Length = 125 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 44/102 (43%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P + +G+ I R G++Q + E + + + V ++E+G G + L+ + VL Sbjct: 1 MPTSLASVIGRNIASVRKQRGLTQAAVAEQIDVDAETVSRFERGAVMPGVATLERLCAVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 E + S ++ + +++ ++ D L L Sbjct: 61 ECSWMDLLEGSSGDAQQVAHDIVRLLEPLAGDDRLFLLEQMK 102 >gi|315223214|ref|ZP_07865075.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315187646|gb|EFU21400.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 135 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R + G++QE + E L ++ Q + +E + +S++ + + Sbjct: 1 MEIGKKLKEARQMSGLTQENVAEKLNVSRQTISNWETEKFYPDILYVLQLSDLYQVSLDE 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + N Sbjct: 61 LLKGYERMIQHLEDSTN 77 >gi|213019781|ref|ZP_03335584.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994611|gb|EEB55256.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 302 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 58/127 (45%), Gaps = 7/127 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E +G+ + + +YEKG ++ +L I+E L Sbjct: 1 MEKSLDCEVGQKVKSWRLERGYTQKDLAEKVGVKYWAILQYEKGSRKIPIKKLYAIAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI------QIDDVKVRQKI- 119 + E+ +++ + +L+ F ++ + + R+ + Sbjct: 61 SVNVKGLVCGETLPNEKRYFEDEEILNLVKGYKDEELSEVFYLLTKFIRLSEERSRKAVK 120 Query: 120 IELVRSI 126 IE+ R + Sbjct: 121 IEVARGL 127 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 58/147 (39%), Gaps = 21/147 (14%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 KIP P VG+RI+ R+I G +Q+ L +GIT Q + +YE+G V L I Sbjct: 149 EENKIPIP--YKVGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRAAVSLEMLHEI 206 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE- 121 ++VL I S N L + +I+ ++R +I+ Sbjct: 207 AKVLSISIIDLLPESDEDSEAEEKLSN-------------LIEEYKKIESRELRDMLIKS 253 Query: 122 LVRSIV-----SSEKKYRTIEEECMVE 143 L I E+K + + E Sbjct: 254 LFEGIHVCREKVREEKKIEVARNLVKE 280 >gi|307287627|ref|ZP_07567670.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306501365|gb|EFM70668.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315165024|gb|EFU09041.1| helix-turn-helix protein [Enterococcus faecalis TX1302] Length = 183 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + + + V R F D + R Sbjct: 63 TYLLEGDYVKENPVVKKTETVTQHSEDHSY----RVFNYYSDNQER 104 >gi|183599041|ref|ZP_02960534.1| hypothetical protein PROSTU_02486 [Providencia stuartii ATCC 25827] gi|188021257|gb|EDU59297.1| hypothetical protein PROSTU_02486 [Providencia stuartii ATCC 25827] Length = 104 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 2/96 (2%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +DI+ +G +I+ RR LG+S L + L I+ QQV +YE G+N++ + L I+ L+ Sbjct: 1 MDIHYFIGIKIKTRRKELGLSGADLAKKLNISQQQVSRYENGINKIPLNHLVSIAIALKC 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 PI +FF T +E + + Sbjct: 61 PIDWFFQGCITEEDYSMQDETINIKSQELKYTAESV 96 >gi|167757519|ref|ZP_02429646.1| hypothetical protein CLORAM_03069 [Clostridium ramosum DSM 1402] gi|167702516|gb|EDS17095.1| hypothetical protein CLORAM_03069 [Clostridium ramosum DSM 1402] Length = 367 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 40/90 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK++ R G+SQE LG L ++ Q V K+E ++ + IS+ E I+ Sbjct: 1 MSIGKKLLSLRQEKGISQEALGRELNVSRQTVSKWESDLSLPDMKMMITISQFYEISITQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 D+ +D ++ + + Sbjct: 61 LLDLDDETEADSINKIYEQTSLVLENLQKE 90 >gi|23100309|ref|NP_693776.1| hypothetical protein OB2854 [Oceanobacillus iheyensis HTE831] gi|22778541|dbj|BAC14810.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 179 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 36/83 (43%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ G++++ R G SQ+ L E + ++ Q V K+E G N + ++S++ + I Sbjct: 27 NMFFGEKLKKEREKRGWSQDYLAEKVYVSRQSVSKWETGKNYPSIEVIINLSDLFDITID 86 Query: 72 FFFDVSPTVCSDISSEENNVMDF 94 + + + + Sbjct: 87 ELLRSDEELKEKVIRDSKQLAYP 109 >gi|259047500|ref|ZP_05737901.1| Cro/CI family transcriptional regulator [Granulicatella adiacens ATCC 49175] gi|259035691|gb|EEW36946.1| Cro/CI family transcriptional regulator [Granulicatella adiacens ATCC 49175] Length = 180 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 39/88 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R R+ G++QE+L E ++ + + E ++ I EVL P + Sbjct: 1 MEIGHQLRALRIQKGLTQEELAERTDLSKGYISQLENDLSSPSMDTFFDILEVLGCPAAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG 100 FFD P I EE+ M + Sbjct: 61 FFDEGPEEALTIYREEDMTMMEDAKHHT 88 >gi|171778203|ref|ZP_02919432.1| hypothetical protein STRINF_00271 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283027|gb|EDT48451.1| hypothetical protein STRINF_00271 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 184 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 31/83 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R+ R +SQE++ E L ++ Q + K+E+G + L ++ + + Sbjct: 1 MELERRLAELRKEKNVSQEEIAEKLYVSRQTISKWERGKTYPDINSLLLMANYFDVSLDH 60 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 + I Sbjct: 61 LIKGDVDTMKHQVDQSQFKRWLI 83 >gi|282862576|ref|ZP_06271637.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282562262|gb|EFB67803.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 477 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 1/120 (0%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R GM+Q + LGI+ + E+ + AS L I+EV +FF + Sbjct: 14 AKLRRLRREHGMNQVDMARALGISTSYANQIEQSRRPLTASVLLRIAEVFGVDAAFFSEA 73 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + P + D V + ++ L R + ++ + Sbjct: 74 DEDRLAADLRAAIADEACGVAPIAPDEISEAAR-DHPDVARALVALHRRYRDTVEQAAAL 132 >gi|190570724|ref|YP_001975082.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019732|ref|ZP_03335537.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190356996|emb|CAQ54385.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994773|gb|EEB55416.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 306 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 11/139 (7%) Query: 1 MVGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K N +D +G+ +R RR+ G +Q+ L + + T+Q + +YEKG R+ +L Sbjct: 1 MKKENKCSNFLDYKVIGQEVRNRRLAKGYTQKDLAKKIDTTYQVILQYEKGTRRISIKKL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 ++E L + V EE L L R +I D ++R+ Sbjct: 61 YELAEALSTTARDLACVQGVSNEKRYEEEE----------VLNLVRRHKEIKDQELRETF 110 Query: 120 IELVRSIVSSEKKYRTIEE 138 L + I SE++ + Sbjct: 111 YLLTKFIRISEEESGKAVK 129 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 13/119 (10%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N + + VG+RI+ R+ G +QE L +GI Q++ +YE+G + V L I Sbjct: 155 DNDEKKISIPYKVGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRSAVSLEMLDEI 214 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++VL I+ + + +L + + +I ++R +I+ Sbjct: 215 AKVLLINITDLLPETRENENSEVELS-------------RLIKEYKKIKSQELRNVLIK 260 >gi|297203878|ref|ZP_06921275.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] gi|197713065|gb|EDY57099.1| DNA-binding protein [Streptomyces sviceus ATCC 29083] Length = 194 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 1/121 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P+PVD +G R+ R G S +L E G++ + + E+ AS L Sbjct: 1 MRRYEPEPDPVDTRLGVRLAELRAERGWSLGELAERSGVSKSTLSRAERAEISPTASLLN 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + V +S ++ + + + R + +R +++ Sbjct: 61 RLCGVYGRTMSQLLS-EIEAEAEPAPLVRSAGQPVWEDRAAGFVRRSVSPPHPGLRGELV 119 Query: 121 E 121 E Sbjct: 120 E 120 >gi|163733451|ref|ZP_02140894.1| DNA-binding protein, putative [Roseobacter litoralis Och 149] gi|161393239|gb|EDQ17565.1| DNA-binding protein, putative [Roseobacter litoralis Och 149] Length = 466 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 44/129 (34%), Gaps = 3/129 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R +G +Q+ LG++ + + E V + + +++ ++ + Sbjct: 9 GAKLRELRTRIGHTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALAQEFGLDVTELSE 68 Query: 76 VSPTVCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 E F T P L ++L R+ +++ Sbjct: 69 GDSERLVSDMREALADPVFAETLPPLADLRLAASNAPTFAH--AFLKLHRNYRQMQERLA 126 Query: 135 TIEEECMVE 143 +++E E Sbjct: 127 SLDEALGRE 135 >gi|262283189|ref|ZP_06060956.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262261441|gb|EEY80140.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 135 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 34/77 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R + GM+QE + E L ++ Q + +E + +S++ E + Sbjct: 1 MEIGKKLKEARQLSGMTQESVAEELNVSRQTISNWETEKFYPDILYVLQLSDLYEVSLDE 60 Query: 73 FFDVSPTVCSDISSEEN 89 ++ + + Sbjct: 61 LLKGDESMIQHLEESTD 77 >gi|321272298|gb|ADW80183.1| putative transcriptional regulator [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1] gi|321272350|gb|ADW80231.1| putative transcriptional regulator [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB] Length = 312 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 11/139 (7%) Query: 1 MVGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K N +D +G+ +R RR+ G +Q+ L + + T+Q + +YEKG R+ +L Sbjct: 1 MKKENKCSNFLDYKVIGQEVRNRRLAKGYTQKDLAKKIDTTYQVILQYEKGTRRISIKKL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 ++E L + + EE L L R +I D ++R+ Sbjct: 61 YELAEALSTTARDLACGQEVSNEERYEEEE----------ILNLVRRHKEIKDQELRETF 110 Query: 120 IELVRSIVSSEKKYRTIEE 138 L + I SE++ + Sbjct: 111 YLLTKFIRISEEESGKAVK 129 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 14/137 (10%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N + + VG+RI+ R+ G +QE L +GI Q++ +YE+G V L I Sbjct: 158 DNDEKKISIPYKVGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRAGVSLEMLDEI 217 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE- 121 ++VL I+ + + +L + +I ++R +I+ Sbjct: 218 AKVLSISITDLLPETTENENSEVELS-------------RLIEEYKKIKSQELRHVLIKS 264 Query: 122 LVRSIVSSEKKYRTIEE 138 L SI ++K + +E+ Sbjct: 265 LFESIQVCKEKVKRVEK 281 >gi|317490559|ref|ZP_07949035.1| hypothetical protein HMPREF1023_02735 [Eggerthella sp. 1_3_56FAA] gi|316910339|gb|EFV31972.1| hypothetical protein HMPREF1023_02735 [Eggerthella sp. 1_3_56FAA] Length = 205 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R G++QE+L L ++ V K+E G LQ ++ + + + Sbjct: 4 GEKLKALRTERGLTQEQLAARLYVSRTAVSKWETGGGSPNLDSLQAVARLFDVSVDDLLS 63 Query: 76 VSP 78 Sbjct: 64 TDD 66 >gi|315032681|gb|EFT44613.1| helix-turn-helix protein [Enterococcus faecalis TX0017] Length = 183 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + + + V R F D + R Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQHSDDHSY----RVFNYYSDNQER 104 >gi|146299913|ref|YP_001194504.1| XRE family plasmid maintenance system antidote protein [Flavobacterium johnsoniae UW101] gi|146154331|gb|ABQ05185.1| plasmid maintenance system antidote protein, XRE family [Flavobacterium johnsoniae UW101] Length = 136 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 5/133 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+ I R + GM QE L +G+T Q V E G + +L I+EVL Sbjct: 8 KHIGRNISRIRELRGMKQEALAFAIGVTQQTVSNIE-GSETIEDDKLDAIAEVLGVSAEA 66 Query: 73 FFDVSPTVCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + S +I N D + N I+ + +K L +V +EK Sbjct: 67 IKNYSDEAVFNIIGNTVNNHDNAALFQYHPTFNPIDKLIESYEENKK---LYERLVQAEK 123 Query: 132 KYRTIEEECMVEQ 144 E+ + + Sbjct: 124 DKNEYLEKLLKGK 136 >gi|261345516|ref|ZP_05973160.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282566568|gb|EFB72103.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 106 Score = 57.1 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +DI+ +G +I+ RR LG+S L + L I+ QQ+ +YE G+N++ + L I+ L+ Sbjct: 1 MDIHYFIGIKIKARRKELGLSGAGLAKILNISQQQISRYENGINKIPLNHLVSIAVALKC 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 PI +FF + + N + + Sbjct: 61 PIDWFFQGCISDEDYSIQDSNMGIKNQELKYTAESV 96 >gi|240169850|ref|ZP_04748509.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 474 Score = 57.1 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D D ++ + + ++ L R + + Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIDVDPTEVAEMVGA--HPALARAMVNLHRRYRITTAQL 122 Query: 134 RTIEEE 139 EE Sbjct: 123 AAATEE 128 >gi|163761507|ref|ZP_02168579.1| TRANSCRIPTIONAL REGULATOR, MERR FAMILY [Hoeflea phototrophica DFL-43] gi|162281221|gb|EDQ31520.1| TRANSCRIPTIONAL REGULATOR, MERR FAMILY [Hoeflea phototrophica DFL-43] Length = 480 Score = 57.1 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 1/128 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R G++Q LGI+ + + E V AS L ++E I+ Sbjct: 6 LFIGGKIRAIRGEQGLTQAGFATKLGISTSYLNQIENNQRHVSASVLLALAEAFSVDITT 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D SE T L + +Q + + + L +++ S + Sbjct: 66 LSDQDTDRLLADVSEALADPVSGGTQPSLTDVKLVVQ-NAPSFARAFVALHQAMRRSGDQ 124 Query: 133 YRTIEEEC 140 ++E Sbjct: 125 LAELDETL 132 >gi|92114209|ref|YP_574137.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91797299|gb|ABE59438.1| transcriptional regulator, XRE family with cupin sensor protein [Chromohalobacter salexigens DSM 3043] Length = 195 Score = 57.1 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R++ R + +SQ +L + G+T + E+ S L+ I + + IS FF Sbjct: 6 VGARLKQLRKLRDLSQRELAKRAGVTNSTISLIEQNNVSPSVSSLKKILDAMPVSISEFF 65 Query: 75 DVSPTVCSD 83 T + Sbjct: 66 AGEETSPQE 74 >gi|213019728|ref|ZP_03335533.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994769|gb|EEB55412.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 300 Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 12/126 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E +G+ + + +YEKG R+ RL I+E L Sbjct: 1 MEKSLDCEVGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAITEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 I+ +S + D E L L R + +I+D ++R+ L + Sbjct: 61 SISITDLIPISKSCLEDEGEEI------------LNLVREYKKINDQELRKMFCLLTNFV 108 Query: 127 VSSEKK 132 SEK Sbjct: 109 QISEKS 114 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 14/130 (10%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GK+I+ R++ +Q+ L E + T ++ YE+G V +L ++E L Sbjct: 155 SIYCQIGKKIKEWRLVREYTQKDLAEKMNTTRDEISNYEQGRTAVPLDKLYEMAEALSIN 214 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVS 128 I+ + + L + + +I+ ++R +I+ L + Sbjct: 215 ITDLLIEKDEGSTVENELP-------------DLIKEYKEIESQELRNALIKSLFEGMHI 261 Query: 129 SEKKYRTIEE 138 E+K R E Sbjct: 262 CEEKVRKAER 271 >gi|331701987|ref|YP_004398946.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129330|gb|AEB73883.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 196 Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 1/94 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +IR R + G SQE+L + ++ Q + +E G + +S + + Sbjct: 1 MDIGNKIRDYREVRGFSQEELASKIYVSRQTISNWETGKQYPDIQNVLLLSVLFGVSVDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 S++ +S + L Sbjct: 61 LIKGDLEAMKAKLSDKKVNTA-MSVYTWVMLIAA 93 >gi|226313174|ref|YP_002773068.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226096122|dbj|BAH44564.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 120 Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 48/119 (40%), Gaps = 7/119 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR R +QE+ + ++ Q+V +E+ + I+++ + + Sbjct: 7 VGQRIRKLRKANNWTQEQFANRVNVSPQKVSNWERDYTSPSVEDIARIAQICNTESDYIL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI--IELVRSIVSSEK 131 + + + + ++ +F + ++ + ++ + + +R I +K Sbjct: 67 TGRTSPLTSSAKSDKHLSEFENLFFF-----ELDKLSEEDKKKALEHVRYLRYIAEQQK 120 >gi|83951416|ref|ZP_00960148.1| probable transcriptional regulator [Roseovarius nubinhibens ISM] gi|83836422|gb|EAP75719.1| probable transcriptional regulator [Roseovarius nubinhibens ISM] Length = 219 Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD +G+ IR R ++ L E G++ + + E+ NR + L IS L + Sbjct: 24 VDPGLGEEIRNLRKARRLTLGALAEATGLSTGFISQIERAQNRPSVTALFRISRALGVSV 83 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 S+FF S ++ + ++ D +R +++ Sbjct: 84 SWFFPGPEVPDSGAPDPDSPDQNTADRSIIVRRAERRAIAYDDGIRDELL 133 >gi|325831430|ref|ZP_08164684.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325486684|gb|EGC89132.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 205 Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R G++QE+L L ++ V K+E G LQ ++ + + + Sbjct: 4 GEKLKALRTERGLTQEQLAARLYVSRTAVSKWETGGGSPNLDSLQAVARLFDVSVDDLLS 63 Query: 76 VSP 78 Sbjct: 64 ADD 66 >gi|238027673|ref|YP_002911904.1| putative phage repressor [Burkholderia glumae BGR1] gi|237876867|gb|ACR29200.1| Putative phage repressor [Burkholderia glumae BGR1] Length = 241 Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 50/112 (44%), Gaps = 8/112 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RIR +R+ G++ +++G+ GI+ V +E+G R +L ++ +L++ I+F Sbjct: 1 MDIGSRIREKRLAHGLTLQQVGDMFGISRSAVASWERGATRPDQDKLPRLARILKTSIAF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 S + + +D +R I+++ R Sbjct: 61 LLSGERRHDIGGSDSPTDDDEVTEDNG--------YTLDAPPLRSDIVQISR 104 >gi|197285673|ref|YP_002151545.1| transcriptional regulator [Proteus mirabilis HI4320] gi|227356180|ref|ZP_03840569.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|194683160|emb|CAR43778.1| putative transcriptional regulator [Proteus mirabilis HI4320] gi|227163644|gb|EEI48560.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 100 Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 40/82 (48%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L + +VL Sbjct: 6 PVAYAVGQKIKSLRKSQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLVKVLDVLGIN 65 Query: 70 ISFFFDVSPTVCSDISSEENNV 91 I FF+ D+ Sbjct: 66 IGNFFEDVMGGMVDVPENNEQH 87 >gi|220930677|ref|YP_002507586.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220001005|gb|ACL77606.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 281 Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 47/131 (35%), Gaps = 8/131 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR R G++ E L + L ++ + YE + L +E + + Sbjct: 1 MTLGENIRELRKKKGLTIEALADELNSSYSTIGMYELDKRKPDYDMLCKFAEYFNVTVDY 60 Query: 73 FFDVSPTVCSDISS------EENNVMDFISTPDGLQLNRYFIQIDDVKVRQK--IIELVR 124 V S E+ ++ ++ G+ + F + + + L + Sbjct: 61 LLGVKKKSILSASDLYKEFIEQKVPIEKLADNIGISADTLFKILKSEEGATEADYYRLCK 120 Query: 125 SIVSSEKKYRT 135 + SE+K Sbjct: 121 WLGYSEEKAEE 131 >gi|328885628|emb|CCA58867.1| Transcriptional regulator, XRE family [Streptomyces venezuelae ATCC 10712] Length = 476 Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 8/123 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R GM+Q +L LG++ + + E + A L I+EV FF + Sbjct: 13 AKLRRLRRERGMNQVELARALGLSTSYLNQIEHSQRPLTAPVLLRIAEVFGVDPEFFSEA 72 Query: 77 SPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + I+ + + R D +V + ++ L + + ++ Sbjct: 73 EEERLATDLRAALGDEACGAPIAQDEIADVAR-----DHPEVARALVTLHQRYRDASERV 127 Query: 134 RTI 136 + Sbjct: 128 AAL 130 >gi|89095957|ref|ZP_01168851.1| hypothetical protein B14911_04469 [Bacillus sp. NRRL B-14911] gi|89089703|gb|EAR68810.1| hypothetical protein B14911_04469 [Bacillus sp. NRRL B-14911] Length = 292 Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats. Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 1/102 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++IR R +LG+SQ++L E + T Q+ K EKG AS L IS+ L +++F Sbjct: 5 AIGQKIRDLRKLLGLSQKELAEGI-CTQAQISKIEKGDVYPYASTLYLISQKLGVDVNYF 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 F + T D E ++ + R I+ ++ Sbjct: 64 FHIGTTPRLDYILEVERQLEITRRSFDYETMRSIIKGEENNP 105 >gi|312134838|ref|YP_004002176.1| XRE family transcriptional regulator [Caldicellulosiruptor owensensis OL] gi|311774889|gb|ADQ04376.1| transcriptional regulator, XRE family [Caldicellulosiruptor owensensis OL] Length = 230 Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 5/109 (4%) Query: 6 KIPNPVDINV---GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K+ +D N+ G RIR R G+ Q+ + + L I+ Q + YE G ++ Sbjct: 2 KMVMNMDFNLKLFGLRIRELREKQGLQQKDVAKKLNISNQALSNYELGKRMPSLEMVKKF 61 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 ++ + + T + + +++ V F+ ++ I I Sbjct: 62 ADFFNVSTDYLMGL--TNSPNPNQDDDVVKKFLENNPDVRPVGKMIPIP 108 >gi|187778336|ref|ZP_02994809.1| hypothetical protein CLOSPO_01928 [Clostridium sporogenes ATCC 15579] gi|187771961|gb|EDU35763.1| hypothetical protein CLOSPO_01928 [Clostridium sporogenes ATCC 15579] Length = 111 Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 25/116 (21%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R GM+QE+LG+ L IT Q V YEKG N L I+++ + + Sbjct: 21 GDRLKELREEKGMTQEQLGKLLNITKQAVYSYEKGDNEPTIDALVKIADIFNVSLDYLLG 80 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + RY + + D K ++ +++L++ I +K Sbjct: 81 RTKE-------------------------RYNLNLKDKKNKELLLDLIKVIEKHKK 111 >gi|71281165|ref|YP_268401.1| DNA-binding protein [Colwellia psychrerythraea 34H] gi|71146905|gb|AAZ27378.1| DNA-binding protein [Colwellia psychrerythraea 34H] Length = 185 Score = 56.8 bits (135), Expect = 9e-07, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 60/138 (43%), Gaps = 12/138 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +G +++L R G S + + ++ + + E+G + +RL I+ Sbjct: 1 MSINFNNAIGSQLKLARTNKGWSLDIASKNTNVSKAMLGQIERGESSPTVARLWDIATGF 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+S+FF +++ + +++ G+ ++ F DV+ + ++ L ++ Sbjct: 61 HLPLSYFF--------LAIEDDDVSKNMLNSEAGISISTLFP--FDVETKSEVFSL--TL 108 Query: 127 VSSEKKYRTIEEECMVEQ 144 S ++ + ++E Sbjct: 109 ASLHQQISAPHNDGVIEH 126 >gi|190570687|ref|YP_001975045.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356959|emb|CAQ54347.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 305 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 13/130 (10%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GK+I+ R++ G +Q+ L E + T ++ YE+G + +L I+E L Sbjct: 158 SIYCQIGKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSIN 217 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVS 128 I +++ + +E N L + +I+ ++R +I+ L SI Sbjct: 218 IMDLLELTEDADDKVENELPN------------LIEEYKEIESQELRYALIKFLFESIQI 265 Query: 129 SEKKYRTIEE 138 E+K + +E+ Sbjct: 266 CEEKVKRVEK 275 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 10/115 (8%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + +++R R+ G +Q+ L +G+T+Q V +YEKG+ ++ +L I++VL Sbjct: 5 SIRYQIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGIRKISIEKLYAIAKVLSVD 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 I I + + L L R + +I+D ++R+ L + Sbjct: 65 IIDL----------IPVSNEKICLEDEEEEILDLVREYKKINDQELRKMFCLLTK 109 >gi|182435435|ref|YP_001823154.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463951|dbj|BAG18471.1| putative DNA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 468 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 2/110 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R GMSQ +L L I+ + + E + L ++E FF + Sbjct: 7 GARLRRLREDRGMSQAELARTLAISPSYLNQMEHDARPLTVPVLLRLTEAFGVDPGFFSE 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + E + + L ++ V + +++L R Sbjct: 67 RDTSRLVADLREALSGELAAARVSPSDLADLAARM--PAVARVLVDLGRR 114 >gi|259501148|ref|ZP_05744050.1| xre family toxin-antitoxin system [Lactobacillus iners DSM 13335] gi|302190406|ref|ZP_07266660.1| DNA-binding protein [Lactobacillus iners AB-1] gi|309804359|ref|ZP_07698435.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|312871026|ref|ZP_07731129.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|325913257|ref|ZP_08175625.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|259167842|gb|EEW52337.1| xre family toxin-antitoxin system [Lactobacillus iners DSM 13335] gi|308163571|gb|EFO65842.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|311093521|gb|EFQ51862.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|325477360|gb|EGC80504.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] Length = 210 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 37/74 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60 Query: 73 FFDVSPTVCSDISS 86 D + I Sbjct: 61 LLDKDNAIDLSIIK 74 >gi|282600090|ref|ZP_05972947.2| DNA-binding protein [Providencia rustigianii DSM 4541] gi|282566637|gb|EFB72172.1| DNA-binding protein [Providencia rustigianii DSM 4541] Length = 99 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 4/99 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N K P V VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L Sbjct: 1 MFMNTKYP--VACAVGQKIKSLRKAQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLV 58 Query: 61 HISEVLESPISFFFDV--SPTVCSDISSEENNVMDFIST 97 + +VL + FF + + E D I + Sbjct: 59 RVLKVLGVNMGEFFGEVLQDDMNATEGKESKGFNDSIYS 97 >gi|160894107|ref|ZP_02074885.1| hypothetical protein CLOL250_01661 [Clostridium sp. L2-50] gi|156864140|gb|EDO57571.1| hypothetical protein CLOL250_01661 [Clostridium sp. L2-50] Length = 313 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 13/127 (10%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK +G ++ R ++QE+L E G++ + V ++E G+N S L Sbjct: 1 MDTKK--------IGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSILVQ 52 Query: 62 ISEVLESPISFFFDVSPT-----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++E + + D + + + +++ N F + + V Sbjct: 53 LAEYYDVEMRELLDGERSQTMNKEMKETLDKVAVYEEWVKQKALKAGNLAFASMFVISVL 112 Query: 117 QKIIELV 123 II+++ Sbjct: 113 AIIIQML 119 >gi|67078396|ref|YP_246013.1| DNA-binding protein [Bacillus cereus E33L] gi|66970702|gb|AAY60674.1| possible transcriptional regulator [Bacillus cereus E33L] Length = 143 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 32/89 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G +++ R G SQE L + ++ Q V K+E G N + +S++ I Sbjct: 1 MFFGDKLKKEREKKGWSQEYLATKIHVSRQSVSKWETGKNYPSIGVIIDLSDLFGITIDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 + I + D L Sbjct: 61 LLRSDGELKEKIIQDSKGSTDLNWKSYLL 89 >gi|134293636|ref|YP_001117372.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134136793|gb|ABO57907.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia vietnamiensis G4] Length = 191 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 7/128 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +++G +IR R L ++ ++ GI+ + + E+G + L I++ L + Sbjct: 11 VAVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTM 70 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSS 129 +F D S + F ++ F ++ + +K+ LVR Sbjct: 71 QYFIDTPTEARSVCRAHALQYFQFTNS------ANLFAKLTNPVDGRKLDAILVRMPAGQ 124 Query: 130 EKKYRTIE 137 T Sbjct: 125 SPSEITTH 132 >gi|321272295|gb|ADW80180.1| putative transcriptional regulator [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1] Length = 306 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 58/127 (45%), Gaps = 7/127 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E +G+ + + +YEKG ++ +L I+E L Sbjct: 5 MEKSLDYEVGQKVKNWRLERGYTQKDLAEKVGVKYWAILQYEKGNRKIPIKKLYAIAEAL 64 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI------QIDDVKVRQKI- 119 + E+ +++ + +L+ F ++ + + R+ + Sbjct: 65 SVNVKGLVCGETLPNEKRYFEDEEILNLVKGYKDKELSEVFYLLTKFIRLSEERSRKAVK 124 Query: 120 IELVRSI 126 +E+ R + Sbjct: 125 MEVARGL 131 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 27/150 (18%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 KIP P VG+RI+ R+I G +Q+ L +GIT Q + +YE+G + V L I Sbjct: 153 EENKIPVP--YKVGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRSAVSLEMLDEI 210 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++VL I + D + +L + +I+ ++R L Sbjct: 211 AKVLSISIIDLL-------------PESDEDSEAEEKLSKLIEEYKKIESRELRNV---L 254 Query: 123 VRSIVS---------SEKKYRTIEEECMVE 143 ++S++ E K + + E Sbjct: 255 IKSLLEGIHVCREKVREAKKIEVARNLVKE 284 >gi|288906392|ref|YP_003431614.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|306832439|ref|ZP_07465592.1| XRE family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979406|ref|YP_004289122.1| HTH-type transcriptional regulator rdgA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733118|emb|CBI14699.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] gi|304425479|gb|EFM28598.1| XRE family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179334|emb|CBZ49378.1| HTH-type transcriptional regulator rdgA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 166 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++++ R +SQEKL E + ++ Q + K+E+G + +S+ + PI + Sbjct: 1 MEFGEKLKQLRKANHLSQEKLSERIHVSRQAISKWEQGSAIPDTDNIVLLSKFFQVPIEY 60 Query: 73 FFDVSPTVCSD 83 + Sbjct: 61 LLLDDEEMREA 71 >gi|56965322|ref|YP_177054.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911566|dbj|BAD66093.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 303 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 2/103 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G IR RM LGMSQE + + ++ + K E G L+ I+ L P+ Sbjct: 1 MDNRIGMEIRNLRMKLGMSQENISSSV-VSQSAISKIENGKYIPNIIVLEAIASKLGVPV 59 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDD 112 F +S + + +++ +S + +LNR Q+ D Sbjct: 60 DHFLTLSTSYNGEYIETTYEMIEQLSLHEEYEELNRLTAQLID 102 >gi|315122908|ref|YP_004063397.1| hypothetical protein CKC_05820 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496310|gb|ADR52909.1| hypothetical protein CKC_05820 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 210 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 2/91 (2%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K++ NP+ +G+RI+ R GM+ ++ GE +G+ V YE+G++ I Sbjct: 87 KKRLINPI--EIGERIKKFRKEEGMTLKEFGEWVGLPVSTVSTYERGISAPEIKTALKIK 144 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDF 94 L P+ + + + S +F Sbjct: 145 RALGKPLDWIYFGDEEIVPKKSRLRAKQSNF 175 Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 1/93 (1%) Query: 4 NKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K++ N +D +G+R R R G + + + V KYE GV + + Sbjct: 2 EKELENTLDWQQIGQRFRDLRERYGYKRSDIIKKTDDQGGAVYKYEAGVQPASTNYALFL 61 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFI 95 + + +D + +++ I Sbjct: 62 RNEFGASFDWLYDGVEAKIKSSDRIKKRLINPI 94 >gi|290473639|ref|YP_003466511.1| transcriptional regulator (MrfJ protein) [Xenorhabdus bovienii SS-2004] gi|289172944|emb|CBJ79715.1| Transcriptional regulator (MrfJ protein) [Xenorhabdus bovienii SS-2004] Length = 100 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 43/65 (66%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + VGKRI +R LG++ L + +GI+ QQ+ +YE+G NR+ + L IS+ L +PIS Sbjct: 5 NTLVGKRICTKRKELGITATALAKQIGISQQQLSRYERGTNRININHLVVISKQLGTPIS 64 Query: 72 FFFDV 76 +FF+ Sbjct: 65 WFFEE 69 >gi|226949453|ref|YP_002804544.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226843380|gb|ACO86046.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 148 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 3/116 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+++ R G+SQE + E L ++ Q V K+E ++ + +SE+ + Sbjct: 1 MSLGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDY 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRS 125 S + I + + + + + I + +KI EL S Sbjct: 61 LIGESHISGDVTGIEMIVDEIDWTGAWSKKYPILASYPGIKGINTYSEKISELYDS 116 >gi|332299188|ref|YP_004441110.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332182291|gb|AEE17979.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 165 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++GK+I R G++Q++L E L ++ Q V K+E V+ + L ++ VL + Sbjct: 4 ISIGKKIAELRKAKGLTQDELSEQLNVSPQAVSKWENDVSYPDITLLPKLAAVLGVTVDD 63 Query: 73 FFD--VSPTVCSDISSEENNVMDFI 95 P ++ NV D + Sbjct: 64 LLTPGKQPETKLVPQADRKNVDDMM 88 >gi|315150068|gb|EFT94084.1| helix-turn-helix protein [Enterococcus faecalis TX0012] Length = 183 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 4/106 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + + + V + R F D + R Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQYSEDHSY----RVFNYYSDNQER 104 >gi|254428930|ref|ZP_05042637.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881] gi|196195099|gb|EDX90058.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881] Length = 119 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 3/107 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ LG++QE+LG+ L +T + +E G + G L + VL + Sbjct: 15 ERLKAARLALGLTQEQLGDELHVTKSTISAWENGRDSPGFRLLPKLKAVLGVSLDHLICG 74 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 P S + + QL + + ++ VK RQ ++ ++ Sbjct: 75 DP--VEGASELNSKYDAQVRNDAEAQLLKGYRRL-SVKRRQGLLAMI 118 >gi|293550683|ref|ZP_06673350.1| transcriptional regulator [Enterococcus faecium E1039] gi|291603210|gb|EFF33395.1| transcriptional regulator [Enterococcus faecium E1039] Length = 145 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 33/87 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R G++ E L E L ++ Q + +E G L+ +S+ P+S+ F Sbjct: 4 KLKRLRKEHGITHENLAEKLHVSRQTISNWENGNTLPDIENLKLLSQFYHIPLSYLFAEK 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLN 104 N + + + L Sbjct: 64 EEEAFSPLESSNKDLKKLLIFLSITLL 90 >gi|332983091|ref|YP_004464532.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332700769|gb|AEE97710.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 124 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 3/123 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R M+QE+ G+ GI V YE + S + I++ I + Sbjct: 2 VTLGQRIKQLRKEHNMTQEEFGKLFGIVKSTVSLYEHDKSIPDDSIKKMIADYFNVSIDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK--IIELVRSIVSSE 130 + + ++ + + I Q+ + + + +++ +++ +E Sbjct: 62 LMGRTDIRYPAKKTIDDKLKEVIGPYIASQII-ALESLSQEEKQTISVLLDGLKARRQTE 120 Query: 131 KKY 133 K Sbjct: 121 DKE 123 >gi|300856997|ref|YP_003781981.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300437112|gb|ADK16879.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 120 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +R++ R G SQE+L E LG+T Q + K+E + + +SE+ + Sbjct: 1 MSISERLQKLRKHEGYSQEQLAEKLGVTRQAISKWESNQGNPDINNIIKLSEIYNVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + I + I + Sbjct: 61 LLKGEEQISKPIEINSKENKENIKS 85 >gi|67458969|ref|YP_246593.1| hypothetical protein RF_0577 [Rickettsia felis URRWXCal2] gi|67004502|gb|AAY61428.1| unknown [Rickettsia felis URRWXCal2] Length = 163 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 77/162 (47%), Gaps = 38/162 (23%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + K P+ + +R++ RR+ +G+SQ++LG+ L I+ QV+KYE+G++ + SRL Sbjct: 1 MNDSIKHPDKLAS---ERLKERRLAVGISQKELGQALDISALQVKKYEEGLSNIPISRLY 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVM-----------DFIST------------ 97 ++VL +P+ +FF+ S E + DF++ Sbjct: 58 VFAKVLNTPLKYFFNSSEEEKLKTDDENTSNNKIEYLFKEIESDFLNNIAEEEGQYENDV 117 Query: 98 ------------PDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + L L R F ++ + +R+ IIELVRS+ Sbjct: 118 SFDYKELSRTMERELLSLTRAFTRVQNPNIRKIIIELVRSVS 159 >gi|229545084|ref|ZP_04433809.1| transcriptional regulator [Enterococcus faecalis TX1322] gi|229309976|gb|EEN75963.1| transcriptional regulator [Enterococcus faecalis TX1322] Length = 183 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + + + V R F D + R Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQHSEDHSY----RVFNYYSDNQER 104 >gi|261344499|ref|ZP_05972143.1| prophage Sa05, DNA-binding protein [Providencia rustigianii DSM 4541] gi|282567408|gb|EFB72943.1| prophage Sa05, DNA-binding protein [Providencia rustigianii DSM 4541] Length = 89 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 40/80 (50%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV +G +I+L R G+S + + +GI+ QQ +YE+G NR+ RL+ + Sbjct: 6 PVSAIIGNKIKLLRKEKGLSLIAVAKGVGISEQQQLRYERGNNRISIDRLKQYANYFNIS 65 Query: 70 ISFFFDVSPTVCSDISSEEN 89 ++ FF + I E N Sbjct: 66 LNQFFSFNENEKEKIKYEVN 85 >gi|309804464|ref|ZP_07698531.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|309809826|ref|ZP_07703678.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 2503V10-D] gi|312873153|ref|ZP_07733212.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|312873404|ref|ZP_07733455.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|325911527|ref|ZP_08173936.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|308166217|gb|EFO68433.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|308169868|gb|EFO71909.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 2503V10-D] gi|311091088|gb|EFQ49481.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|311091386|gb|EFQ49771.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|325476657|gb|EGC79814.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] Length = 210 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 37/74 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60 Query: 73 FFDVSPTVCSDISS 86 D + I Sbjct: 61 LLDKDNAIDLSIIK 74 >gi|256961213|ref|ZP_05565384.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|293384161|ref|ZP_06630055.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293386975|ref|ZP_06631544.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|312907888|ref|ZP_07766871.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312978583|ref|ZP_07790321.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|256951709|gb|EEU68341.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|291078641|gb|EFE16005.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291083645|gb|EFE20608.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|310625979|gb|EFQ09262.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311288732|gb|EFQ67288.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 183 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + + + V R F D + R Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQHSEDHSY----RVFNYYSDNQER 104 >gi|255975095|ref|ZP_05425681.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|307285607|ref|ZP_07565746.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|255967967|gb|EET98589.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|306502831|gb|EFM72096.1| helix-turn-helix protein [Enterococcus faecalis TX0860] Length = 183 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + + + V R F D + R Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQHSEDHSY----RVFNYYSDNQER 104 >gi|198283398|ref|YP_002219719.1| XRE family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247919|gb|ACH83512.1| transcriptional regulator, XRE family [Acidithiobacillus ferrooxidans ATCC 53993] Length = 152 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 8/138 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R LG++Q +LG+ G++ V ++E G + L + + L + Sbjct: 8 IGDRIKEIRKRLGLTQAELGKHAGGLSKSAVHQWENGGTKPAWDALTALRKNLGINPDWV 67 Query: 74 FDVSPTVCSDISS-------EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + ++ + E + R + I D + E++R + Sbjct: 68 MQGEGAMLQELGTPNAATLIESGADGLPFDGRGLTPMQRAMLGIFDRLTSSQQDEVMREL 127 Query: 127 VSSEKKYRTIEEECMVEQ 144 +++K I EE + Sbjct: 128 EETKRKNEEIIEELTRRK 145 >gi|228476741|ref|ZP_04061407.1| transcriptional regulator [Streptococcus salivarius SK126] gi|228251612|gb|EEK10713.1| transcriptional regulator [Streptococcus salivarius SK126] Length = 229 Score = 56.8 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 48/119 (40%), Gaps = 25/119 (21%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R GMSQ + + LGI+ +E G + L ++E+ ++F Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 ++ ++++ + + RQ+ + L ++++ ++ + Sbjct: 64 E------------------------HEIVEVYLEL-NEENRQEALRLTKALLEEQEAEK 97 >gi|111221785|ref|YP_712579.1| putative DNA-binding protein [Frankia alni ACN14a] gi|111149317|emb|CAJ61003.1| putative DNA-binding protein [Frankia alni ACN14a] Length = 500 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 39/123 (31%), Gaps = 2/123 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R MSQ +L LGI+ + + E + L I+E FF Sbjct: 5 FVGTRLRELREERAMSQVELARLLGISPSYLNQIEHNSRPLTVPVLLRITEAFGVDAGFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E + + Q+ +I L R + ++ Sbjct: 65 AAHDVTRLIAEVREVLSDGTIGLKVPATDAAQLAEQLPQTAH--ALITLHRRYRQANERL 122 Query: 134 RTI 136 + Sbjct: 123 AAL 125 >gi|323339906|ref|ZP_08080175.1| DNA-binding protein [Lactobacillus ruminis ATCC 25644] gi|323092779|gb|EFZ35382.1| DNA-binding protein [Lactobacillus ruminis ATCC 25644] Length = 179 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 33/75 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR++ R+ G +QE++ E L ++ Q + +E G + +S++ + + Sbjct: 47 IGKRLKDARIESGYTQEQVAEQLDVSRQTISSWENGRTFPDIVSVVSLSDIYDVSLDVLI 106 Query: 75 DVSPTVCSDISSEEN 89 + + N Sbjct: 107 KGDEKMLEHLEESTN 121 >gi|119387177|ref|YP_918232.1| hypothetical protein Pden_4472 [Paracoccus denitrificans PD1222] gi|119377772|gb|ABL72536.1| protein of unknown function DUF955 [Paracoccus denitrificans PD1222] Length = 464 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 43/128 (33%), Gaps = 2/128 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I G +R R G++Q + LG++ + + E V A L ++ + Sbjct: 6 IYAGVALRETRARAGLTQRAFADRLGVSLPYLSQMENNHRPVSAGVLLRLASEFSVDLGA 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 +E F +TP L + + ++L R+ +++ Sbjct: 66 MAVGDAERMVMDMAEALADPLFDATPPRADLRLAATNA--PALARAFLDLYRAHREGQER 123 Query: 133 YRTIEEEC 140 ++E Sbjct: 124 LAALDEAL 131 >gi|294509118|ref|YP_003566046.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] gi|294352042|gb|ADE72366.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] Length = 149 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 4/115 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I R + ++Q++L E L +T Q + K+E + + +L ++EVL + Sbjct: 4 GEKIAKARREMNLTQDQLAEMLEVTRQTISKWESNLAYPESVKLGKLAEVLNVTCDYLLR 63 Query: 76 VSPTVCSDISSEENNVM----DFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + S E + LN Y ID +KI +V+ I Sbjct: 64 ENQATSTSTSIEVTMNNSGNYTLDWSKLYPILNEYQNMIDCPHYFEKIYGMVKEI 118 >gi|229549329|ref|ZP_04438054.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255972038|ref|ZP_05422624.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256956771|ref|ZP_05560942.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|300860468|ref|ZP_07106555.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|312953579|ref|ZP_07772416.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|229305566|gb|EEN71562.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255963056|gb|EET95532.1| conserved hypothetical protein [Enterococcus faecalis T1] gi|256947267|gb|EEU63899.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|300849507|gb|EFK77257.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|310628417|gb|EFQ11700.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|315035920|gb|EFT47852.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315148523|gb|EFT92539.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315151846|gb|EFT95862.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315159274|gb|EFU03291.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315170200|gb|EFU14217.1| helix-turn-helix protein [Enterococcus faecalis TX1342] gi|323481485|gb|ADX80924.1| helix-turn-helix family protein [Enterococcus faecalis 62] gi|327535779|gb|AEA94613.1| cro/CI family transcriptional regulator [Enterococcus faecalis OG1RF] Length = 183 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + + + V R F D + R Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQHSEDHSY----RVFNYYSDNQER 104 >gi|168211008|ref|ZP_02636633.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|170710935|gb|EDT23117.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] Length = 330 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 54/129 (41%), Gaps = 3/129 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV- 76 I+ R +SQ +L E LG+ + YE+ L +S+++ I + Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLVQLSKLMNRSIDSLLGLN 71 Query: 77 -SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRSIVSSEKKYR 134 S +D+++ + + FI + N+ F +++ K+R +++ ++ + + Sbjct: 72 HSTENTNDLNNSDLSKKIFILNKLIEKNNQSFKELESSKLRTERMFNELKRTRNRAENDI 131 Query: 135 TIEEECMVE 143 + E E Sbjct: 132 KLFRELSKE 140 >gi|331702633|ref|YP_004399592.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129976|gb|AEB74529.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 110 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R LG +Q++L E L ++ Q + K+E G RL +S++ + Sbjct: 1 MVLGQRIKEEREKLGWTQDRLAEELHVSRQAISKWEVGSAYPDIERLIQLSDLFGVSLDS 60 Query: 73 FFDVSP 78 Sbjct: 61 LIKGDE 66 >gi|257084469|ref|ZP_05578830.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256992499|gb|EEU79801.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|315172481|gb|EFU16498.1| helix-turn-helix protein [Enterococcus faecalis TX1346] Length = 183 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + + + V R F D + R Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQHSEDHSY----RVFNYYSDNQER 104 >gi|226330186|ref|ZP_03805704.1| hypothetical protein PROPEN_04099 [Proteus penneri ATCC 35198] gi|225200981|gb|EEG83335.1| hypothetical protein PROPEN_04099 [Proteus penneri ATCC 35198] Length = 94 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 45/85 (52%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K I ++ +G RI +R G + ++ LGI+ QQ +YE+G N++ +L Sbjct: 1 MIDKNIKLSINEVIGNRISKKRREQGWTGNQVASLLGISQQQFSRYERGRNQISVYQLMK 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISS 86 IS +L + I++FFD + S Sbjct: 61 ISRILNTSINWFFDDYEKIDSSTGE 85 >gi|29376999|ref|NP_816153.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|227554043|ref|ZP_03984090.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256616940|ref|ZP_05473786.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256763188|ref|ZP_05503768.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256853861|ref|ZP_05559226.1| transcriptional regulator [Enterococcus faecalis T8] gi|256963668|ref|ZP_05567839.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257079726|ref|ZP_05574087.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257087532|ref|ZP_05581893.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257090691|ref|ZP_05585052.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257419956|ref|ZP_05596950.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|294779679|ref|ZP_06745069.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|307270739|ref|ZP_07552030.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307271614|ref|ZP_07552885.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307276796|ref|ZP_07557907.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307290439|ref|ZP_07570354.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312905231|ref|ZP_07764351.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|29344465|gb|AAO82223.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|227176791|gb|EEI57763.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256596467|gb|EEU15643.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256684439|gb|EEU24134.1| conserved hypothetical protein [Enterococcus faecalis T3] gi|256710804|gb|EEU25847.1| transcriptional regulator [Enterococcus faecalis T8] gi|256954164|gb|EEU70796.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256987756|gb|EEU75058.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256995562|gb|EEU82864.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256999503|gb|EEU86023.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257161784|gb|EEU91744.1| conserved hypothetical protein [Enterococcus faecalis T11] gi|294453233|gb|EFG21645.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|306498632|gb|EFM68134.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306506433|gb|EFM75592.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306511492|gb|EFM80491.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|306513049|gb|EFM81690.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310631468|gb|EFQ14751.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315025312|gb|EFT37244.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315030397|gb|EFT42329.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315161820|gb|EFU05837.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315168539|gb|EFU12556.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315574702|gb|EFU86893.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315579274|gb|EFU91465.1| helix-turn-helix protein [Enterococcus faecalis TX0630] gi|315580922|gb|EFU93113.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|329578095|gb|EGG59508.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 183 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + + + V R F D + R Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQHSEDHSY----RVFNYYSDNQER 104 >gi|256962367|ref|ZP_05566538.1| predicted protein [Enterococcus faecalis Merz96] gi|256952863|gb|EEU69495.1| predicted protein [Enterococcus faecalis Merz96] Length = 308 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 3/104 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R +GM+Q+ L E L Q + K+E G L I L I Sbjct: 7 IGNKLKEARENMGMTQQVLAEKLDENPQYISKWENGKMIPPTHLLPEICSHLNISIDDLL 66 Query: 75 DVSP---TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 D + NV++ ++ + + + I+ +V Sbjct: 67 DNRRKHIEKSERLIDLGKNVLELVNEKSPKEFYKKYQLINKEQV 110 >gi|213019902|ref|ZP_03335694.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994511|gb|EEB55167.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 243 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 60/130 (46%), Gaps = 13/130 (10%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GK+I+ R++ G +Q+ L E + T ++ YE+G + +L I+E L Sbjct: 96 SIYCQIGKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSIN 155 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVS 128 I +++ + +E N L + +I+ ++R +I+ L SI Sbjct: 156 IMDLLELTEDADDKVENELPN------------LIEEYKEIESQELRYALIKFLFESIQI 203 Query: 129 SEKKYRTIEE 138 E+K + +E+ Sbjct: 204 CEEKVKRVEK 213 >gi|163868802|ref|YP_001610026.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018473|emb|CAK02031.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 96 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 39/67 (58%), Positives = 55/67 (82%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGKRIR RR +L MSQ+ LG+ LG++FQQ+QKYEKG+NRV A RL+ IS++L P+ Sbjct: 8 IDLFVGKRIRFRRKMLKMSQKTLGQHLGVSFQQIQKYEKGLNRVSAGRLKEISDILNVPL 67 Query: 71 SFFFDVS 77 +FF+ +S Sbjct: 68 AFFYTIS 74 >gi|160944105|ref|ZP_02091335.1| hypothetical protein FAEPRAM212_01607 [Faecalibacterium prausnitzii M21/2] gi|158444781|gb|EDP21785.1| hypothetical protein FAEPRAM212_01607 [Faecalibacterium prausnitzii M21/2] Length = 163 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 3/123 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R+ LG++Q++ G +GI V E G +R+ S I + + + Sbjct: 6 RIKELRLALGLNQQEFGARIGIKVSAVSYLESGKSRLTESNAILICREFNVNRDWLLNGA 65 Query: 78 PTVCSDISSEENN--VMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + S + + + TP + + ++ + RQ ++++ I+ S + Sbjct: 66 GEMFQPNSQDAVDALAEQYDLTPLERDMVENYCRLSKAQ-RQAFWDVMQKIIGSSAQSGG 124 Query: 136 IEE 138 EE Sbjct: 125 AEE 127 >gi|328958487|ref|YP_004375873.1| conserved hypothetical protein; possible transcriptional regulator [Carnobacterium sp. 17-4] gi|328674811|gb|AEB30857.1| conserved hypothetical protein; possible transcriptional regulator [Carnobacterium sp. 17-4] Length = 183 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 3/107 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + +G+R++ R+ G SQ + E L I+ Q + K+E G L Sbjct: 1 MIEENNQEGERHMALGERLKESRVSKGFSQGDVAEHLQISRQSISKWETGNGYPDLDNLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 +S E I + + + I E + + L R F Sbjct: 61 KLSVYYEVSIDDLLKENQKLKNKIHENEIKIEE---NHQKLDFIRGF 104 >gi|168183849|ref|ZP_02618513.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|182673110|gb|EDT85071.1| putative DNA-binding protein [Clostridium botulinum Bf] Length = 148 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 47/116 (40%), Gaps = 3/116 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+++ R G+SQE + E L ++ Q V K+E ++ + +SE+ + Sbjct: 1 MSLGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDY 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRS 125 + + I + + + + + I + +KI EL S Sbjct: 61 LISENYISGDVTGIEMIVDEIDWTGAWSKKYPILASYPGIKGINTYSEKISELYDS 116 >gi|225388149|ref|ZP_03757873.1| hypothetical protein CLOSTASPAR_01884 [Clostridium asparagiforme DSM 15981] gi|225045810|gb|EEG56056.1| hypothetical protein CLOSTASPAR_01884 [Clostridium asparagiforme DSM 15981] Length = 179 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 37/100 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + +R R G+SQE L E L ++ Q V K+E+G L +S L + Sbjct: 5 EHLRQIRKEKGLSQEDLAELLDVSRQAVSKWEQGAGYPEVETLLLLSNRLNISLDSLMAT 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 E I++P + + I K++ Sbjct: 65 EIAREGGGGRAEVTGTILITSPHENVVVSCYKVISSQKMK 104 >gi|237795609|ref|YP_002863161.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|229263162|gb|ACQ54195.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 148 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 47/116 (40%), Gaps = 3/116 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+++ R G+SQE + E L ++ Q V K+E ++ + +S++ + Sbjct: 1 MSLGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQMVPELNKAKLLSQLYNVSYDY 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRS 125 + + I + + + + + I + +KI EL S Sbjct: 61 LISENYISGDVTGIEMIVDEIDWTGAWSKKYPILASYPGIKGINTYSEKISELYDS 116 >gi|167628808|ref|YP_001679307.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] gi|167591548|gb|ABZ83296.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] Length = 119 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 6/117 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G RI+ R G++Q +L + L ++ Q + +E+G + + ++ +LE+ F Sbjct: 4 IGNRIKHLRKQRGLTQPQLAKLLNVSPQVISNWERGYTPTIAPESIDKLASILETTSDFL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S S P+G+++ R + + ++ I+EL+ + V +E Sbjct: 64 LGRSTASISSSLEALEKSW-----PEGIKVLRRANEKLTPEKKRVILELIDTYVRTE 115 >gi|227514760|ref|ZP_03944809.1| bacteriophage transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|227086869|gb|EEI22181.1| bacteriophage transcriptional regulator [Lactobacillus fermentum ATCC 14931] Length = 115 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 43/112 (38%), Gaps = 9/112 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R +SQ LG+ +G++ V +E ++ + ++E+ E + Sbjct: 12 VMIGARIKHLRKGRNLSQAMLGKYIGVSQTTVTAWETNRTEPSSTYVTKLAELFEVSTDY 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 D ++ ++ + + ++ + R I L+ Sbjct: 72 LLDHERSIRQPVTVDLADENVNLTYRG---------RPLSKNDRNIIYRLME 114 >gi|319938757|ref|ZP_08013121.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811807|gb|EFW08073.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 135 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 34/77 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R + G++QE + E L ++ Q + +E + +S++ + + Sbjct: 1 MEIGRKLKEARQMSGLTQENVAEKLNVSRQTISNWETEKFYPDILYVLQLSDLYQVSLDE 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + + N Sbjct: 61 LLKGDERMIQHLENSTN 77 >gi|42520475|ref|NP_966390.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410214|gb|AAS14324.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 302 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D VG++++ R+ G +Q+ L E LG+ + + +YEKG R+ RL I+E L Sbjct: 8 SLDYKVGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSIS 67 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I+ +S + D E L L R + +I+D ++R+ L + S Sbjct: 68 ITDLIPISKSCLEDEGEEI------------LNLVREYKKINDQELRKMFCLLTNFVQVS 115 Query: 130 EKK 132 EK Sbjct: 116 EKS 118 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 16/130 (12%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GK+I+ R++ +Q+ L E + T ++ YE+G V +L ++E L Sbjct: 159 SIYCQIGKKIKEWRLVREYTQKDLVEKMSTTRDEISNYEQGRTAVPLDKLYEMAEALSIN 218 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVS 128 I+ + + L + + +I+ ++R +I+ L I Sbjct: 219 ITDLLIKEGSKVKNELP---------------DLIKEYKEIESQELRHALIKSLFEGIRI 263 Query: 129 SEKKYRTIEE 138 E+K R IE Sbjct: 264 CEEKVREIER 273 >gi|56419028|ref|YP_146346.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|56378870|dbj|BAD74778.1| transcriptional regulator [Geobacillus kaustophilus HTA426] Length = 125 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 6/120 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R ++QE+LG+ + +T + YE G LQ +++ + Sbjct: 7 LGDRLRKLRQEKKLTQEELGKKINVTKVSISGYENGNRTPDTETLQKLADFFNVTTDYLL 66 Query: 75 DVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + + D +L + R++++++ + S + Sbjct: 67 GRTDHPNPPDQDDIPEELKDPELGLFFKELAEA-----PEERREQLLKIWEILKSEGDRK 121 >gi|239995180|ref|ZP_04715704.1| transcriptional regulator, HTH_3 family protein [Alteromonas macleodii ATCC 27126] Length = 187 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 37/97 (38%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P+ + ++ ++ R G+S +K + G++ + + E+G + + L Sbjct: 1 MTKANAQPSAISRSIAHHLQSVRKARGLSLDKTAQLTGVSKAMLGQIERGESSPTIATLW 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 I+ L S F T + ++ D T Sbjct: 61 KIATGLACSFSSFLSGDETAPTSQHADNKFANDPNVT 97 >gi|282600408|ref|ZP_05974197.2| putative transcriptional regulatory protein [Providencia rustigianii DSM 4541] gi|282565257|gb|EFB70792.1| putative transcriptional regulatory protein [Providencia rustigianii DSM 4541] Length = 185 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 38/89 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N ++I +G++IRL R +S +L + GI+ + K E G + L+ I+ L Sbjct: 1 MSNKINIKIGQKIRLLRQARNLSLNELSQLSGISKAALSKLESGDSNPRIDTLESIAAAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFI 95 P+S F D++ Sbjct: 61 RFPLSDLFTRQNESYPYFVKAIPQEGDYL 89 >gi|25026941|ref|NP_736995.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259508572|ref|ZP_05751472.1| DNA-binding protein [Corynebacterium efficiens YS-314] gi|23492221|dbj|BAC17195.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259163839|gb|EEW48393.1| DNA-binding protein [Corynebacterium efficiens YS-314] Length = 474 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 14/132 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+E +FF Sbjct: 5 YVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII---ELVRSIVSSE 130 + ++ ++ ++D P ++L ++ + + +L R++V Sbjct: 65 SRDDDSRL--LAEVQDVMLDREINPSSIEL---------QELSEMVYNHPQLARAMVEMH 113 Query: 131 KKYRTIEEECMV 142 ++YR + ++ + Sbjct: 114 RRYRNVRDKLSI 125 >gi|257081927|ref|ZP_05576288.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] gi|256989957|gb|EEU77259.1| conserved hypothetical protein [Enterococcus faecalis E1Sol] Length = 183 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + + + V R F D + R Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQHSEDHSY----RVFNYYSDNQER 104 >gi|253579239|ref|ZP_04856509.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA] gi|251849337|gb|EES77297.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA] Length = 313 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 13/127 (10%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK +G ++ R ++QE+L E G++ + V ++E G+N S L Sbjct: 1 MDTKK--------IGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSILVQ 52 Query: 62 ISEVLESPISFFFDVSPT-----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++E + + D + + + +++ N F + + V Sbjct: 53 LAEYYDVEMRELLDGERSQTMNKEMKETLDKVAVYEEWVKQKALKAGNLAFASMFVISVL 112 Query: 117 QKIIELV 123 II+++ Sbjct: 113 AIIIQML 119 >gi|254562707|ref|YP_003069802.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|254269985|emb|CAX25965.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 94 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 3/97 (3%) Query: 39 ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 +TFQQ+QKYE GVNRVGASRL ++ LE P+S FF+ + E F+ P Sbjct: 1 MTFQQIQKYENGVNRVGASRLSEVARALEVPVSTFFEEGSGLVEQGQKEAFE---FLRVP 57 Query: 99 DGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + L FI I+D ++R++++ LVRS E+ T Sbjct: 58 GAVDLLNAFITIEDDRLRREVLALVRSATRREQDQGT 94 >gi|153955450|ref|YP_001396215.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855863|ref|YP_002472985.1| hypothetical protein CKR_2520 [Clostridium kluyveri NBRC 12016] gi|146348308|gb|EDK34844.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569587|dbj|BAH07571.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 130 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 8/125 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R++ R + Q+++ + L IT YE+G L I+E I + Sbjct: 1 MLSDRLKKLRNEKNLLQKEIAKKLKITTSAYGFYEQGKRTPDTEILNKIAEFYNVSIDYL 60 Query: 74 FD--------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 T + + E + + + + LQL + K +II ++++ Sbjct: 61 LGRTNIRDSADKITNSLNSNPELSEFWNSLRNREDLQLLFKQTKDLSPKNINQIIRIIKA 120 Query: 126 IVSSE 130 I E Sbjct: 121 IKDDE 125 >gi|37524779|ref|NP_928123.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784204|emb|CAE13073.1| MrfJ protein [Photorhabdus luminescens subsp. laumondii TTO1] Length = 101 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 31/60 (51%), Positives = 45/60 (75%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI+ RR LGM+ KL E +GI+ QQ+ +YE+G+NR+ S L I+ +LE+PI++FF Sbjct: 10 VGKRIQKRRKELGMTAVKLAEKIGISQQQLSRYERGINRINLSHLVQIASILETPINWFF 69 >gi|134298741|ref|YP_001112237.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051441|gb|ABO49412.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 77 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 33/67 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G +I+ R G+SQ +L +G+T + K E G L+ I+ L+ ++ Sbjct: 5 IQLGHKIKNLREKKGLSQVQLAHMVGVTNSLICKIETGQTSGSIHTLKKIANKLDVSVNI 64 Query: 73 FFDVSPT 79 FF+ + Sbjct: 65 FFEDDSS 71 >gi|58696656|ref|ZP_00372210.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|58699194|ref|ZP_00374006.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|225630362|ref|YP_002727153.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225630756|ref|YP_002727547.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|58534290|gb|EAL58477.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58537180|gb|EAL60282.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|225592343|gb|ACN95362.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225592737|gb|ACN95756.1| transcriptional regulator, putative [Wolbachia sp. wRi] Length = 302 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D VG++++ R+ G +Q+ L E LG+ + + +YEKG R+ RL I+E L Sbjct: 8 SLDYKVGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSIS 67 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I+ +S + D E L L R + +I+D ++R+ L + S Sbjct: 68 ITDLIPISKSCLEDEGEEI------------LNLVREYKKINDQELRKMFCLLTNFVQVS 115 Query: 130 EKK 132 EK Sbjct: 116 EKS 118 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 16/130 (12%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GK+I+ R++ +Q+ L E + T ++ YE+G V +L ++E L Sbjct: 159 SIYCQIGKKIKEWRLVREYTQKDLVEKMSTTRDEISNYEQGRTAVPLDKLYEMAEALSIN 218 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVS 128 I+ + + L + + +I+ ++R +I+ L I Sbjct: 219 ITDLLIEEGSKVKNELP---------------DLIKEYKEIESQELRHALIKSLFEGIRI 263 Query: 129 SEKKYRTIEE 138 E+K R IE Sbjct: 264 CEEKVREIER 273 >gi|16129529|ref|NP_416088.1| Qin prophage; predicted regulator for DicB [Escherichia coli str. K-12 substr. MG1655] gi|89108412|ref|AP_002192.1| predicted regulator for DicB [Escherichia coli str. K-12 substr. W3110] gi|170020075|ref|YP_001725029.1| transcriptional repressor DicA [Escherichia coli ATCC 8739] gi|170081237|ref|YP_001730557.1| Qin prophage; regulator for DicB [Escherichia coli str. K-12 substr. DH10B] gi|218554136|ref|YP_002387049.1| transcriptional repressor DicA [Escherichia coli IAI1] gi|238900790|ref|YP_002926586.1| Qin prophage; putative regulator for DicB [Escherichia coli BW2952] gi|300939073|ref|ZP_07153765.1| transcriptional repressor DicA [Escherichia coli MS 21-1] gi|307310860|ref|ZP_07590506.1| transcriptional regulator, XRE family [Escherichia coli W] gi|118631|sp|P06966|DICA_ECOLI RecName: Full=HTH-type transcriptional regulator dicA; AltName: Full=Repressor protein of division inhibition gene dicA gi|41278|emb|CAA30349.1| unnamed protein product [Escherichia coli] gi|1742572|dbj|BAA15275.1| predicted regulator for DicB [Escherichia coli str. K12 substr. W3110] gi|1787853|gb|AAC74643.1| Qin prophage; predicted regulator for DicB [Escherichia coli str. K-12 substr. MG1655] gi|169755003|gb|ACA77702.1| transcriptional regulator, XRE family [Escherichia coli ATCC 8739] gi|169889072|gb|ACB02779.1| Qin prophage; predicted regulator for DicB [Escherichia coli str. K-12 substr. DH10B] gi|218360904|emb|CAQ98476.1| putative transcriptional regulator for DicB; Qin prophage [Escherichia coli IAI1] gi|238863388|gb|ACR65386.1| Qin prophage; predicted regulator for DicB [Escherichia coli BW2952] gi|260449307|gb|ACX39729.1| transcriptional regulator, XRE family [Escherichia coli DH1] gi|284921476|emb|CBG34547.1| repressor protein of division inhibition gene [Escherichia coli 042] gi|300456019|gb|EFK19512.1| transcriptional repressor DicA [Escherichia coli MS 21-1] gi|306909038|gb|EFN39534.1| transcriptional regulator, XRE family [Escherichia coli W] gi|315060877|gb|ADT75204.1| Qin prophage; predicted regulator for DicB [Escherichia coli W] gi|315136211|dbj|BAJ43370.1| transcriptional repressor DicA [Escherichia coli DH1] gi|323378556|gb|ADX50824.1| helix-turn-helix domain protein [Escherichia coli KO11] gi|323940355|gb|EGB36547.1| helix-turn-helix protein [Escherichia coli E482] Length = 135 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 8/131 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G+RIR RR L +Q L + L I+ V ++E+G + L +S+VL+ + Sbjct: 5 NLTIGERIRYRRKNLKHTQRSLAKALKISHVSVSQWERGDSEPTGKNLFALSKVLQCSPT 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + E+ +P L+L F + + + ++ E + + K Sbjct: 65 WILFGDEDKQPTPPVEKPV----ALSPKELELLELFNALPESEQDTQLAE----MRARVK 116 Query: 132 KYRTIEEECMV 142 + + EE + Sbjct: 117 NFNKLFEELLK 127 >gi|319934812|ref|ZP_08009257.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319810189|gb|EFW06551.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 302 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +++ R G+SQE L E L ++ Q V K+E G +L IS++ I + Sbjct: 4 GMKLQSLRKEKGLSQEALAEKLHVSRQAVSKWESGAGYPEMDKLILISDLFGVTIDYLIK 63 Query: 76 VSPTVCSDISSEENNVM 92 S D E+ Sbjct: 64 DSHESVPDDQRAESKYF 80 >gi|302669238|ref|YP_003832388.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396902|gb|ADL35806.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 359 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 11/134 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G +I+ R +Q++L LGIT Q V ++E + I+ I Sbjct: 3 IMLGDKIKELRKRDRRTQDELATALGITNQAVSRWEANKAYPDMEMIPAIANYFHVSIDE 62 Query: 73 FFDVSPTVCSDISSEENNVMDFIS----------TPDGLQLNRYFIQIDDV-KVRQKIIE 121 F + S +S + L + + +++++ Sbjct: 63 LFGYNNDRESTLSRYIEKANRLLEPGVIPDKKQLKRHEQFLREALSEFPNEWHLQERLAM 122 Query: 122 LVRSIVSSEKKYRT 135 ++ I S++K+ + Sbjct: 123 ILSMIASNDKRKKN 136 >gi|308048864|ref|YP_003912430.1| XRE family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307631054|gb|ADN75356.1| transcriptional regulator, XRE family with cupin sensor [Ferrimonas balearica DSM 9799] Length = 180 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 10/132 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R+R R G+SQ +L + G+T + + EK + L+ I + L ++ Sbjct: 1 MDIGNRLRQLRTQAGLSQRELAKRTGVTNGFISQVEKNSVSPSVASLKKILDGLPISLTN 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FFD + + + + + S P +L + ++ + I L ++ + Sbjct: 61 FFDSEERQPAQVVFRADEMPNIGSGPIRYKLVGHAVR------DRAIGMLHETMPAGSDT 114 Query: 133 YRTIE----EEC 140 + + EEC Sbjct: 115 GKEMLTHDGEEC 126 >gi|70727667|ref|YP_254583.1| hypothetical protein SH2668 [Staphylococcus haemolyticus JCSC1435] gi|68448393|dbj|BAE05977.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 190 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 2/85 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R SQE L E L ++ Q + +E + L + + + Sbjct: 1 MEIGQQIRKYREKEKYSQEYLAEKLYVSRQTISNWENERSYPDIHNLLMMCTLFNVSLDD 60 Query: 73 FFDVSPTVC--SDISSEENNVMDFI 95 ++ + + + Sbjct: 61 LVKGDVKRMGHEEVKKDMDFWTWMM 85 >gi|313499113|gb|ADR60479.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 199 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 3/112 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R GM+ +L +T + + E+ ++ L +I+ L I +F Sbjct: 19 FLGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGVTIQWF 78 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 F T + +S + Q+ + +++ L Sbjct: 79 FASEATTAPEDQGYVVRRNSRLSVHYEDGIV---DQLLTPQPNRQLEMLHSR 127 >gi|296875997|ref|ZP_06900055.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432988|gb|EFH18777.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 175 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 53/123 (43%), Gaps = 12/123 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +SQ+++ + + I+ + + ++E G +++ + Q +++ + + Sbjct: 2 NRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKAQQLADCFGVSVGYLLGY 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 S S +S + D P R + + D +L++ + E++Y T Sbjct: 62 SEYRDSQEASYQLYQKDP-DDPYNHVKARVYSILGD--------DLMKVL---EEQYITG 109 Query: 137 EEE 139 +E Sbjct: 110 HDE 112 >gi|237738629|ref|ZP_04569110.1| predicted protein [Fusobacterium sp. 2_1_31] gi|229424112|gb|EEO39159.1| predicted protein [Fusobacterium sp. 2_1_31] Length = 213 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 5/125 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS-----RLQHISEVLE 67 +++G++I+ R+ +SQ++ E +G+T + E G + + L I E + Sbjct: 2 LHIGRKIKKFRIENNLSQKEFAEKIGVTQGFLSYVENGRLNIESPSLEKKILIAIGEAPD 61 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + F+ + + SD + M + L+ ++ + +I +V+ +V Sbjct: 62 EDLRKDFEKNVELASDNVHSPKHYMIPGCNFECKDLSDAIVRNMPNPLGTRIWNVVKYLV 121 Query: 128 SSEKK 132 +EKK Sbjct: 122 RAEKK 126 >gi|226305059|ref|YP_002765017.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226184174|dbj|BAH32278.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 470 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L + L I+ + + E V + L ISEV +FF Sbjct: 5 FVGVRLRQLRTERGLSQASLAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVDTTFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E + D ++ + + ++ + R ++ + Sbjct: 65 SPQDDTRLIAEMREVALDQEMGIDADAHEIAEMVS--THPGLAKAMVNMHRRFRNTTAQL 122 Query: 134 RTIEEE 139 E+ Sbjct: 123 AAATED 128 >gi|26989587|ref|NP_745012.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24984467|gb|AAN68476.1|AE016480_3 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 199 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 3/112 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R GM+ +L +T + + E+ ++ L +I+ L I +F Sbjct: 19 FLGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGVTIQWF 78 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 F T + +S + Q+ + +++ L Sbjct: 79 FASEATTAPEDQGYVVRRNSRLSVHYEDGIV---DQLLTPQPNRQLEMLHSR 127 >gi|148548035|ref|YP_001268137.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512093|gb|ABQ78953.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 199 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 3/112 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R GM+ +L +T + + E+ ++ L +I+ L I +F Sbjct: 19 FLGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGVTIQWF 78 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 F T + +S + Q+ + +++ L Sbjct: 79 FASEATTAPEDQGYVVRRNSRLSVHYEDGIV---DQLLTPQPNRQLEMLHSR 127 >gi|257416739|ref|ZP_05593733.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|257158567|gb|EEU88527.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] Length = 158 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + + + V R F D + R Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQHSEDHSY----RVFNYYSDNQER 104 >gi|75761861|ref|ZP_00741789.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490644|gb|EAO53932.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 114 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 44/122 (36%), Gaps = 14/122 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R +SQ++L + L + + YE I+ L I + Sbjct: 2 VTLGDRIKFIRTKKNISQQELADILNVNRSAISLYETNRKSPSRENTYKIATALGVSIDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSE 130 + F + + + ++D+ + +Q II L+ ++ Sbjct: 62 LLGLQTDPS------------FQTDNIHSETAQLMKRLDNMPSETKQTIINLIDDLLKIH 109 Query: 131 KK 132 +K Sbjct: 110 EK 111 >gi|256848082|ref|ZP_05553526.1| predicted protein [Lactobacillus coleohominis 101-4-CHN] gi|256715142|gb|EEU30119.1| predicted protein [Lactobacillus coleohominis 101-4-CHN] Length = 273 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 7/76 (9%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P RI R G++ +++ + + + + +YE G Sbjct: 1 MNTNKKPR-------NRIAELRKEKGLTLQQVADAVSVGNNTISRYETGKREPKLETWMK 53 Query: 62 ISEVLESPISFFFDVS 77 ++ V + P+S+ Sbjct: 54 LANVFDVPVSYIMGTD 69 >gi|257791416|ref|YP_003182022.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257475313|gb|ACV55633.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 205 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R G++QE+L L ++ V K+E G LQ ++ + + + Sbjct: 4 GEKLKALRTERGLTQEQLAAKLYVSRTAVSKWETGGGSPNLDSLQVVARLFDVSVDDLLS 63 Query: 76 VSP 78 Sbjct: 64 TDD 66 >gi|241662630|ref|YP_002980990.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|240864657|gb|ACS62318.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 107 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 38/98 (38%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K NP+ +GKR+++ R+ ++QE+L + V E+GV L ++ Sbjct: 10 SKDKRNPIATAIGKRVKVCRVEAELTQEQLAHEALVDRSYVSSIERGVANPSIETLANLC 69 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 + +S F+ +N + + Sbjct: 70 YCMGITLSRLFEPLAISLKPTGERRSNAHVPVGSRKTR 107 >gi|206889709|ref|YP_002248181.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741647|gb|ACI20704.1| DNA binding protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 107 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 10/116 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I+ R G SQ +L E +GIT+QQ+QKYEKG +++ RL I+ L+ P+S Sbjct: 1 MKIGEIIKRLRKAKGFSQMELAEKIGITYQQLQKYEKGKSKITVDRLIDIARALDVPLSA 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + E ++ YF +I D ++R+ +++ + Sbjct: 61 ILSEIYKKENIEIYSEEEIV----------FLEYFRKISDPELRKSFLKIFEQLSK 106 >gi|228960178|ref|ZP_04121835.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799446|gb|EEM46406.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar pakistani str. T13001] Length = 118 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 12/123 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R ++QEK+GE +G++ Q + KYEKG ++ +++ PI + F Sbjct: 4 IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPIDYLF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR----SIVSSE 130 S ++ + + + + + + L+ ++ E Sbjct: 64 GKSDNSIKSSNNIKEIFES--------DELHWDGRKLSPEEIESVKALLEVAIQRMLKQE 115 Query: 131 KKY 133 KK Sbjct: 116 KKD 118 >gi|146297213|ref|YP_001180984.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410789|gb|ABP67793.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 145 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 59/141 (41%), Gaps = 15/141 (10%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G +IR+ R G+ Q +L + L I+ + +YE G R L I++ + Sbjct: 5 HEILKYLGLQIRVLREWAGLKQTELAKKLHISQTTLARYENGELRPPIETLLRIADFFDV 64 Query: 69 PISFFFDVSPTVCSDIS---------------SEENNVMDFISTPDGLQLNRYFIQIDDV 113 I + +S +E ++D + + L+L ++ Sbjct: 65 SIDALLGRKNSHKDPLSILQELRIQKEQNVLENEIKELLDKTANKEELRLLLRQLKSCSP 124 Query: 114 KVRQKIIELVRSIVSSEKKYR 134 K +++I+++++I E+K Sbjct: 125 KTIKRLIKIIKAIEEEEQKNE 145 >gi|227549722|ref|ZP_03979771.1| MerR family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227078218|gb|EEI16181.1| MerR family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 467 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 3/126 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L L ++ V + E V + L+ I+E +FF Sbjct: 5 YVGSRLRQLRRERNLSQASLAATLELSASYVNQIEHDVRPLTVPVLKRITEAFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + + L +L+ + + + ++E+ R ++ K Sbjct: 65 SRDDDSRLLAELKDVVADQELGAANVELQELSELVYRHPSIA--RSVVEMHRRYSNARDK 122 Query: 133 YRTIEE 138 + Sbjct: 123 LTLALD 128 >gi|49476037|ref|YP_034078.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238845|emb|CAF28129.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 119 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 34/63 (53%), Positives = 47/63 (74%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI VGK+IR RR +L MSQ+ L + L ++ QQ+QKYE G+NRV A RL+ I+++L PI+ Sbjct: 15 DIFVGKKIRFRRKMLKMSQKTLADHLKVSPQQIQKYETGLNRVSAGRLKEIADILSVPIA 74 Query: 72 FFF 74 FF Sbjct: 75 FFM 77 >gi|220931033|ref|YP_002507941.1| transcriptional regulator, XRE family [Halothermothrix orenii H 168] gi|219992343|gb|ACL68946.1| transcriptional regulator, XRE family [Halothermothrix orenii H 168] Length = 182 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ N+GK++R R+ G S L E G++ + + E+G L ++ L Sbjct: 2 NEINANIGKKLRKLRIGKGYSLGDLEEIAGVSKSMLGQIERGKTNPTVKTLWKVARSLNV 61 Query: 69 PISFFFDVSPTVCSDISSEEN 89 P SFF + + S + Sbjct: 62 PFSFFIEEETSPVKVFSPSKE 82 >gi|255531981|ref|YP_003092353.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344965|gb|ACU04291.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 327 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 7/74 (9%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N K+ +G +I R + +SQ +L + L I+ Q V K+E+G + Sbjct: 1 MLNTKM-------IGNKITEARKKINISQVQLAQRLFISPQAVGKWERGESMPDIITFNR 53 Query: 62 ISEVLESPISFFFD 75 +SE+L +++F + Sbjct: 54 LSEILGVDLNYFSE 67 >gi|168186644|ref|ZP_02621279.1| helix-turn-helix domain protein [Clostridium botulinum C str. Eklund] gi|169295453|gb|EDS77586.1| helix-turn-helix domain protein [Clostridium botulinum C str. Eklund] Length = 210 Score = 56.4 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 8/135 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+RI++ R+ ++Q +L + GI+ + YE+G L +IS+ L I+ Sbjct: 1 MNLGERIKMLRLEKNLTQSELAKIAGISRVAIGNYERGTRIPNIDILLNISKALGVTINN 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS--- 129 + + + + + IS D L++ + D ++ ++ I + + Sbjct: 61 LLEF-DVKLDNGGTASYSFKNRISDIDKLEV----ESLSDDELLKRRIAYIEKLHGKNPN 115 Query: 130 EKKYRTIEEECMVEQ 144 +KK I E E+ Sbjct: 116 DKKISNILERINNEK 130 >gi|325264849|ref|ZP_08131577.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324029838|gb|EGB91125.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 538 Score = 56.0 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 9/130 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +I R + +SQEK+ E ++ Q VQK+E G + L I+E + + + Sbjct: 1 MLADKIGKLRKLRKISQEKMAEMFSVSRQAVQKWENGTSVPDLDNLVRIAEYFDVSLDYL 60 Query: 74 FDV-----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV----KVRQKIIELVR 124 + + + E + QL + Q D K + + V Sbjct: 61 INGKDYQNTEEMVLTRKIEPSYSTMHTWENYSAQLMVEYDQCCDEGKDMKPLKGLFAEVD 120 Query: 125 SIVSSEKKYR 134 + +K Sbjct: 121 RLPEGREKKE 130 >gi|302391895|ref|YP_003827715.1| XRE family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302203972|gb|ADL12650.1| transcriptional regulator, XRE family [Acetohalobium arabaticum DSM 5501] Length = 184 Score = 56.0 bits (133), Expect = 1e-06, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 40/100 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D+N+G ++ R G S KL E ++ + + E+G + L I++ L Sbjct: 3 DIDLNIGTKLHQIRKKKGYSLSKLEEVTEVSKSMLGQIERGTSNPTVKTLWKIAKGLNVS 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 S F + + S +S + + + + F Q Sbjct: 63 FSTFIEEESSEVSIVSPADTKPLIEDDSNYLVYPLFSFEQ 102 >gi|329920508|ref|ZP_08277240.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] gi|328936184|gb|EGG32637.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] Length = 87 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 37/74 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60 Query: 73 FFDVSPTVCSDISS 86 D + I Sbjct: 61 LLDKDNAIDLSIIK 74 >gi|226327970|ref|ZP_03803488.1| hypothetical protein PROPEN_01852 [Proteus penneri ATCC 35198] gi|225203674|gb|EEG86028.1| hypothetical protein PROPEN_01852 [Proteus penneri ATCC 35198] Length = 100 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 40/82 (48%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L + EVL Sbjct: 6 PVAYAVGQKIKSLRKSQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLVKVLEVLGVN 65 Query: 70 ISFFFDVSPTVCSDISSEENNV 91 I FF+ + + Sbjct: 66 IGSFFEEVTGGMAQETELNEQH 87 >gi|58699199|ref|ZP_00374010.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58534286|gb|EAL58474.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 119 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 12/122 (9%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D VG++++ R+ G +Q+ L E LG+ + + +YEKG R+ RL I+E L Sbjct: 8 SLDYKVGEKLKSWRLERGYTQKDLAEKLGVKYWVILQYEKGNRRISIERLYAITEALSIS 67 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I+ +S + D E L L R + +I+D ++R+ L + S Sbjct: 68 ITDLIPISKSCLEDEGEEI------------LNLVREYKKINDQELRKMFCLLTNFVPVS 115 Query: 130 EK 131 EK Sbjct: 116 EK 117 >gi|327393838|dbj|BAK11260.1| putative HTH-type transcriptional regulator YdcN [Pantoea ananatis AJ13355] Length = 181 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 11/131 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++ R G S E G++ + + E+G + + L I+ P SFF Sbjct: 7 YLGDGLKQLRQANGWSLSLTAEKTGVSKAMLGQIERGESSPTVATLWKIATGFNVPFSFF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 +++ TP + R + L + + + Sbjct: 67 VHSGAHSAGEVTGYRQQNAQMAVTP-----------LLPYDARLRFDLLAVELAAGAQSD 115 Query: 134 RTIEEECMVEQ 144 T E+ ++EQ Sbjct: 116 STAHEKGVIEQ 126 >gi|307704993|ref|ZP_07641880.1| transcriptional regulator [Streptococcus mitis SK597] gi|307621444|gb|EFO00494.1| transcriptional regulator [Streptococcus mitis SK597] Length = 288 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 16/139 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ RR L MSQ +L E + Q+ + E G GA L +S+ L+ I +FF+ Sbjct: 8 RLKNRRKELKMSQRELAEGI-CKQGQISRLENGEFTPGADFLYALSKKLKVSIDYFFNEQ 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV-------------RQKIIELVR 124 D SE + T + +Y +++ VKV + +I+ Sbjct: 67 IGEEIDELSEFKKLAQTFITNRNYESLKYIYELESVKVHRLSLVDKFYMEWIKSLIDFY- 125 Query: 125 SIVSSEKKYRTIEEECMVE 143 + +++ E+ + + Sbjct: 126 -LYGQKEEGVARLEKVLSQ 143 >gi|256618071|ref|ZP_05474917.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256597598|gb|EEU16774.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|295114477|emb|CBL33114.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] Length = 167 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++IR RM +SQ +L L ++ Q + +E G R L IS + P+ F Sbjct: 4 GEKIRKYRMEKNLSQVELSSILLVSRQTISNWENGRTRPEMENLVLISNFFDVPLEVFLS 63 Query: 76 VSPTVCSDISSE 87 + +E Sbjct: 64 EDISEIKKQHTE 75 >gi|218779224|ref|YP_002430542.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218760608|gb|ACL03074.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 433 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R+ G+SQ ++ + +G+T + + E L ++E+L + F Sbjct: 254 LGTRIKQLRVKKGLSQVQMAKMVGVTASTISQVENNSIYPSIPGLLKMAEILNVSPGYLF 313 Query: 75 DVSPTVCSDI 84 S I Sbjct: 314 SSDFEKRSQI 323 >gi|312899924|ref|ZP_07759242.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|311292920|gb|EFQ71476.1| helix-turn-helix protein [Enterococcus faecalis TX0470] Length = 183 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + + + V R F D + R Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQHSEDHSY----RVFNYYSDNQER 104 >gi|239942469|ref|ZP_04694406.1| XRE family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239988933|ref|ZP_04709597.1| XRE family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291445925|ref|ZP_06585315.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291348872|gb|EFE75776.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 486 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 48/135 (35%), Gaps = 3/135 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + V + ++R R GM+Q + LGI+ + E G + AS L Sbjct: 1 MARRASEHKVYAH--SKLRRLRRERGMNQVDMARALGISASYANQIELGQRPLTASVLLQ 58 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I++V FF + + + ++ + D +V + ++ Sbjct: 59 IAKVFGVDAEFFSEAAGDRLAADLRAALADEACGVAVPAVEEIAEAAR-DHPEVARALVA 117 Query: 122 LVRSIVSSEKKYRTI 136 L + ++ + Sbjct: 118 LHHRYRETAEQAAAL 132 >gi|224824162|ref|ZP_03697270.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224603581|gb|EEG09756.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 180 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 47/109 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R+R+ R G+SQ +L + G+T + E+ S L+ + E L +S Sbjct: 1 MDIGARLRMVRARFGLSQRELAKRAGVTNGTISLIEQNRVSPSVSSLKKVLEGLPMTLSD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 FF + + + + + L L + D+++ ++ E Sbjct: 61 FFTFDAEPEHKVFYNADELPNLGNEKVQLFLVGASHERRDLQILREFYE 109 >gi|212711630|ref|ZP_03319758.1| hypothetical protein PROVALCAL_02705 [Providencia alcalifaciens DSM 30120] gi|212685732|gb|EEB45260.1| hypothetical protein PROVALCAL_02705 [Providencia alcalifaciens DSM 30120] Length = 95 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 40/92 (43%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V VG +IR R G+S +KL E +GI+ Q + +YE G + L H S + Sbjct: 1 MEKIVSKAVGLKIRALRESRGISGKKLSELMGISQQHLSRYENGDVNIHVDTLYHFSLIF 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 ++FF + +++ + + Sbjct: 61 SVDPAYFFAEFNERTGNREEQDSKKSYYAAES 92 >gi|304321631|ref|YP_003855274.1| XRE family transcriptional regulator [Parvularcula bermudensis HTCC2503] gi|303300533|gb|ADM10132.1| transcriptional regulator, XRE family protein [Parvularcula bermudensis HTCC2503] Length = 226 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 45/117 (38%), Gaps = 1/117 (0%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D +G+RI+ R ++QE LG LG++ V +E +++ L +++ LE Sbjct: 15 PIDT-IGQRIKAARKRCRLNQENLGRELGVSQPTVANWEADIHQPRPFMLGKLADRLEVT 73 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + + + + + R + + + + + + Sbjct: 74 VGWLAGGDEGGSVSVDHPMASYLRRPLRHVPIYNARPLAGLQSLVNLEATFDPIEFL 130 >gi|302390667|ref|YP_003826488.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302201295|gb|ADL08865.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 114 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 44/103 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N ++G+R++ R G++Q+++ + LGI Q+ YE G + + LQ ++ + Sbjct: 1 MNNSFLKSLGERLQEARKKCGLTQDQVAKILGINKVQLSYYETGAREINITLLQELANLY 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 I +F ++ + + + F++ Sbjct: 61 GYSIDYFLGNEDKKEPEVEIAFRADEFCEEDLETIAFAKTFLR 103 >gi|315612466|ref|ZP_07887379.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315315447|gb|EFU63486.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 188 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 28/82 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q L + L Q KYE G + + ++E + + Sbjct: 3 NRLKKLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSIENAKILAEYFGVSTPYLLGL 62 Query: 77 SPTVCSDISSEENNVMDFISTP 98 +D S + + Sbjct: 63 DDDSATDESRKMTPFQSLVRDR 84 >gi|298290822|ref|YP_003692761.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296927333|gb|ADH88142.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 471 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 4/128 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R +SQ L LGI+ + E R+ L ++ Sbjct: 8 IGSRVQRLRRAKRVSQADLAVALGISASYLNLIEHNRRRITVPLLMKLAGYFGIEPGELV 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL---VRSIVSSEK 131 + + E + F Q R + V + ++ L +++ + + Sbjct: 68 ENDESRLVGDLMELFSDDVFAENALTNQDIRDLAA-SNPSVGRAVVRLYDQYKTLRETSR 126 Query: 132 KYRTIEEE 139 + +E+E Sbjct: 127 RQGVVEDE 134 >gi|255262921|ref|ZP_05342263.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] gi|255105256|gb|EET47930.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] Length = 462 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R LG++Q+ LGI+ + + E V + +++ ++ Sbjct: 9 GVKLRDMRGRLGITQKDFAAKLGISLPYLNQMENNNRPVSTGVVLALAQEFGFDVTELQS 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F L R + V + ++L + S ++ + Sbjct: 69 GDEARLISDMREALADPVFAGVEPPLGDLRLMAS-NAPAVARAFLDLHSAYRQSHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|254419132|ref|ZP_05032856.1| conserved domain protein [Brevundimonas sp. BAL3] gi|196185309|gb|EDX80285.1| conserved domain protein [Brevundimonas sp. BAL3] Length = 478 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 52/133 (39%), Gaps = 7/133 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R R G + E E LG++ + + E A L ++ S Sbjct: 5 LFLGAKLRKLREARGWTLEACAERLGLSPSYLSQIETNQRPATARVLIALTRAFHIDASL 64 Query: 73 F-FDVSPTVCSDISSEENNVMDFIS----TPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 F + + +D+ ++ +S P +L + + ++ + + L ++ Sbjct: 65 FDLEGDARLIADLREATTDIAGPVSGGAEPPTAAELKQAVA--NTPRLAHQFLALHQAFR 122 Query: 128 SSEKKYRTIEEEC 140 +++ + +++ Sbjct: 123 QLDERVKALDDTL 135 >gi|75761993|ref|ZP_00741910.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490526|gb|EAO53825.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 143 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 32/89 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G +++ R G SQE L + ++ Q V K+E G N + +S++ I Sbjct: 1 MFFGDKLKKEREKKGWSQEYLATKIHVSRQSVSKWETGKNYPNIGVIIDLSDLFGITIDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 + I + D L Sbjct: 61 LLRSDGELKEKIIQDSKGSTDLNWKSYLL 89 >gi|190570721|ref|YP_001975079.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356993|emb|CAQ54382.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 304 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 12/123 (9%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D VG++++ R+ G +Q+ L E +G+ + + +YEKG R+ RL I+E L Sbjct: 8 SLDCEVGEKVKNWRLERGYTQKDLAEKIGVKYWVILQYEKGNRRISIERLYAITEALSIS 67 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I+ +S + D E L L R + +I+D ++R+ L + S Sbjct: 68 ITDLIPISKSCLEDEGEEI------------LNLVREYKKINDQELRKMFCLLTNFVQIS 115 Query: 130 EKK 132 EK Sbjct: 116 EKS 118 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 14/130 (10%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GK+I+ R++ +Q+ L E + T ++ YE+G V +L ++E L Sbjct: 159 SIYCQIGKKIKEWRLVREYTQKDLAEKMNTTRDEISNYEQGRTAVPLDKLYEMAEALSIN 218 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVS 128 I+ + + L + + +I+ ++R +I+ L + Sbjct: 219 ITDLLIEKDEGSTVENELP-------------DLIKEYKEIESQELRNALIKSLFEGMHI 265 Query: 129 SEKKYRTIEE 138 E+K R E Sbjct: 266 CEEKVRKAER 275 >gi|37528124|ref|NP_931469.1| hypothetical protein plu4293 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787561|emb|CAE16665.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 78 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 33/77 (42%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN V G+R+R R GMSQE + GI + E+GV + I+ Sbjct: 2 KKPNAVKFLFGQRVRYFRQSSGMSQEAFADKCGIDRTYISGIERGVRNPTLEIINIIASG 61 Query: 66 LESPISFFFDVSPTVCS 82 L+ ++ FD S Sbjct: 62 LQIELTDLFDFSAKPKG 78 >gi|256545968|ref|ZP_05473323.1| transcriptional regulator [Anaerococcus vaginalis ATCC 51170] gi|256398390|gb|EEU12012.1| transcriptional regulator [Anaerococcus vaginalis ATCC 51170] Length = 166 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 4/95 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ +R L ++QE L + L I+ Q V K+EK ++ L +SE+ I +F Sbjct: 1 MIGQKIKNKRKELNLTQEYLAKELNISRQAVSKWEKEISEPSMDNLIKLSEIFGVDIGYF 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + S DF+ GL + Sbjct: 61 ----KNEKEEESKIRKIFWDFLYAAIGLVFYLIYY 91 >gi|228966936|ref|ZP_04127974.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] gi|228792670|gb|EEM40234.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] Length = 118 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 12/123 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R ++QEK+GE +G++ Q + KYEKG ++ +++ PI + F Sbjct: 4 IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPIDYLF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR----SIVSSE 130 S ++ + + + + + L+ ++ E Sbjct: 64 GKSDNSIKSSNNIKEIFES--------DELHWDGRKLSPEEIDSVKALLEVAIQRMLKQE 115 Query: 131 KKY 133 KK Sbjct: 116 KKD 118 >gi|320105917|ref|YP_004181507.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319924438|gb|ADV81513.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 116 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 8/119 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R+ GMSQ + + G+ + + E G L+ I+ L+ P+S Sbjct: 1 MNIGGTIRGFRLQKGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLKKIASALDLPLSQ 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 FF + S S + + F++ + + R+ ++ +VR + Sbjct: 61 FFAEEGVVRDMSQQLSLSEDEIKFLTQ------VQRYSSNLSDGDRKLLLAMVRKFAQT 113 >gi|291523917|emb|CBK89504.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291528619|emb|CBK94205.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 213 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 31/63 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ M+QE++ E LG++ Q + +E + + +S+ E+ + + Sbjct: 5 IGSKIKAARLKKKMTQEQVAELLGVSRQTISNWENEKSYPDIISVIKMSDYYEASLDYLL 64 Query: 75 DVS 77 Sbjct: 65 KGE 67 >gi|154502561|ref|ZP_02039621.1| hypothetical protein RUMGNA_00374 [Ruminococcus gnavus ATCC 29149] gi|153796753|gb|EDN79173.1| hypothetical protein RUMGNA_00374 [Ruminococcus gnavus ATCC 29149] Length = 136 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 42/120 (35%), Gaps = 11/120 (9%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R ++Q +L L +T + YE + RL I++ + + S Sbjct: 28 LKELREQNHVTQNQLASHLKLTRSTIAGYETKGTQPDYERLLQIADYFHVSVDYLLTGSE 87 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIEE 138 T + + + +L ++ + RQ++ E + + K + + Sbjct: 88 TNGISVPPDSSEY----------RLLCAYLNLSSDS-RQQLFEYTEFLQDQDTKKGRMPK 136 >gi|145294487|ref|YP_001137308.1| hypothetical protein cgR_0442 [Corynebacterium glutamicum R] gi|140844407|dbj|BAF53406.1| hypothetical protein [Corynebacterium glutamicum R] Length = 474 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 14/132 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+E +FF Sbjct: 5 YVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII---ELVRSIVSSE 130 + ++ ++ ++D P ++L ++ + + +L R++V Sbjct: 65 SRDDDSRL--LAEVQDVMLDREINPANVEL---------QELSEMVYNHPQLARAMVEMH 113 Query: 131 KKYRTIEEECMV 142 ++YR + ++ + Sbjct: 114 QRYRNVRDKLSI 125 >gi|257421865|ref|ZP_05598855.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|257163689|gb|EEU93649.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|315155430|gb|EFT99446.1| helix-turn-helix protein [Enterococcus faecalis TX0043] Length = 183 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + + + V R F D + R Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQHSEDHSY----RVFNYYSDNQER 104 >gi|116491838|ref|YP_803573.1| XRE family transcriptional regulator [Pediococcus pentosaceus ATCC 25745] gi|116101988|gb|ABJ67131.1| Transcriptional regulator, xre family [Pediococcus pentosaceus ATCC 25745] Length = 190 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 9/84 (10%), Positives = 40/84 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R ++Q+++ + +T Q + ++E+G L+ ++++ + Sbjct: 1 MSIGTTLQKIRQARDLTQQEVATQMYVTRQTISRWEQGKTMPNIYALKDLAQLYNVSLDQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 P+ + + + +++++ Sbjct: 61 LVARHPSNSKEEAGHKMKKINWLA 84 >gi|308370626|ref|ZP_07422163.2| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308374223|ref|ZP_07435239.2| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308375371|ref|ZP_07443665.2| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308376634|ref|ZP_07439483.2| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308378845|ref|ZP_07484047.2| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308331404|gb|EFP20255.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308342691|gb|EFP31542.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308346576|gb|EFP35427.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308350499|gb|EFP39350.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308359101|gb|EFP47952.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] Length = 478 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 9/125 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L + L ++ V + E + L ++E + +F Sbjct: 11 GARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQYFSS 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S S+ + T G++ QI++ R + E+ S+V+ ++ R Sbjct: 71 DSDARLVADLSD-------VFTDIGVEHAVSGAQIEEFVAR--MPEVGHSLVAVHRRLRA 121 Query: 136 IEEEC 140 EE Sbjct: 122 ATEEL 126 >gi|215430004|ref|ZP_03427923.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289753196|ref|ZP_06512574.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289693783|gb|EFD61212.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] Length = 486 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 9/125 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L + L ++ V + E + L ++E + +F Sbjct: 19 GARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQYFSS 78 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S S+ + T G++ QI++ R + E+ S+V+ ++ R Sbjct: 79 DSDARLVADLSD-------VFTDIGVEHAVSGAQIEEFVAR--MPEVGHSLVAVHRRLRA 129 Query: 136 IEEEC 140 EE Sbjct: 130 ATEEL 134 >gi|15608269|ref|NP_215645.1| transcriptional regulator protein [Mycobacterium tuberculosis H37Rv] gi|15840567|ref|NP_335604.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31792323|ref|NP_854816.1| transcriptional regulator protein [Mycobacterium bovis AF2122/97] gi|121637061|ref|YP_977284.1| putative transcriptional regulator protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660915|ref|YP_001282438.1| putative transcriptional regulator protein [Mycobacterium tuberculosis H37Ra] gi|148822343|ref|YP_001287097.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|167969266|ref|ZP_02551543.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|215402959|ref|ZP_03415140.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215410750|ref|ZP_03419558.1| transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215426424|ref|ZP_03424343.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|215445295|ref|ZP_03432047.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|218752816|ref|ZP_03531612.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|219557015|ref|ZP_03536091.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|224989534|ref|YP_002644221.1| putative transcriptional regulator protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253799830|ref|YP_003032831.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254231403|ref|ZP_04924730.1| hypothetical protein TBCG_01113 [Mycobacterium tuberculosis C] gi|254364034|ref|ZP_04980080.1| hypothetical transcriptional regulator protein [Mycobacterium tuberculosis str. Haarlem] gi|254550127|ref|ZP_05140574.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186058|ref|ZP_05763532.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|260200171|ref|ZP_05767662.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|260204374|ref|ZP_05771865.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289442559|ref|ZP_06432303.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289446719|ref|ZP_06436463.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289555084|ref|ZP_06444294.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289569125|ref|ZP_06449352.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289573782|ref|ZP_06454009.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289744873|ref|ZP_06504251.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289749665|ref|ZP_06509043.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289757219|ref|ZP_06516597.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|289761269|ref|ZP_06520647.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|294993308|ref|ZP_06798999.1| transcriptional regulator [Mycobacterium tuberculosis 210] gi|297633669|ref|ZP_06951449.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297730656|ref|ZP_06959774.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|298524627|ref|ZP_07012036.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A] gi|306775285|ref|ZP_07413622.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306781801|ref|ZP_07420138.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306788203|ref|ZP_07426525.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306792532|ref|ZP_07430834.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306967199|ref|ZP_07479860.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|307079114|ref|ZP_07488284.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307083678|ref|ZP_07492791.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|313657986|ref|ZP_07814866.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|2117223|emb|CAB09040.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13880746|gb|AAK45418.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31617911|emb|CAD94021.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mycobacterium bovis AF2122/97] gi|121492708|emb|CAL71177.1| Probable transcriptional regulator protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600462|gb|EAY59472.1| hypothetical protein TBCG_01113 [Mycobacterium tuberculosis C] gi|134149548|gb|EBA41593.1| hypothetical transcriptional regulator protein [Mycobacterium tuberculosis str. Haarlem] gi|148505067|gb|ABQ72876.1| putative transcriptional regulator protein [Mycobacterium tuberculosis H37Ra] gi|148720870|gb|ABR05495.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|224772647|dbj|BAH25453.1| putative transcriptional regulator protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253321333|gb|ACT25936.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289415478|gb|EFD12718.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289419677|gb|EFD16878.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289439716|gb|EFD22209.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289538213|gb|EFD42791.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289542879|gb|EFD46527.1| transcriptional regulator [Mycobacterium tuberculosis T17] gi|289685401|gb|EFD52889.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289690252|gb|EFD57681.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289708775|gb|EFD72791.1| transcriptional regulatory protein [Mycobacterium tuberculosis GM 1503] gi|289712783|gb|EFD76795.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|298494421|gb|EFI29715.1| DNA-binding protein [Mycobacterium tuberculosis 94_M4241A] gi|308216217|gb|EFO75616.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308325442|gb|EFP14293.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308335215|gb|EFP24066.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308339022|gb|EFP27873.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308355148|gb|EFP43999.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|308363022|gb|EFP51873.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308366671|gb|EFP55522.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323720411|gb|EGB29505.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326904644|gb|EGE51577.1| transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328459575|gb|AEB04998.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 486 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 9/125 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L + L ++ V + E + L ++E + +F Sbjct: 19 GARLRRLRQERGLTQVALAKALDLSTSYVNQLENDQRPITVPVLLLLTERFDLSAQYFSS 78 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S S+ + T G++ QI++ R + E+ S+V+ ++ R Sbjct: 79 DSDARLVADLSD-------VFTDIGVEHAVSGAQIEEFVAR--MPEVGHSLVAVHRRLRA 129 Query: 136 IEEEC 140 EE Sbjct: 130 ATEEL 134 >gi|116751481|ref|YP_848168.1| XRE family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700545|gb|ABK19733.1| transcriptional regulator, XRE family [Syntrophobacter fumaroxidans MPOB] Length = 432 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 4/113 (3%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K+ +D +G R++ R G+SQ +L + +G+T + + E + L + Sbjct: 243 EEKRSHGGID--LGLRLKELRTKRGISQTELAKSVGVTPSTISQVESNLIYPSLPALMKM 300 Query: 63 SEVLESPISFFFDV--SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 +EVL IS FF + S+ E+ + F P+G R ID Sbjct: 301 AEVLSVDISSFFQERLAGKKKFVFSAMESLQVKFADFPEGSIYARALTPIDSD 353 >gi|302524912|ref|ZP_07277254.1| DNA-binding protein [Streptomyces sp. AA4] gi|302433807|gb|EFL05623.1| DNA-binding protein [Streptomyces sp. AA4] Length = 474 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 2/124 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R MSQ L L I+ + + E + L I++ FF + Sbjct: 7 GARLRHLRESRSMSQADLARVLEISPSYLNQIEHNSRPLTVPVLLRITQAFGVDTEFFAN 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + E +LN + + Q +++L RS ++ + Sbjct: 67 NDTSQLVADVKEALLDEAVGVEATTSELNELASNLPSIA--QALVKLHRSYRNAVESTAA 124 Query: 136 IEEE 139 + E Sbjct: 125 LTTE 128 >gi|261366338|ref|ZP_05979221.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282571941|gb|EFB77476.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 399 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 12/106 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I+ R G+SQE L E +G++ Q + K+EK LQ ++ L+ + Sbjct: 1 MTLGENIQAARKKKGLSQEALAEQVGVSRQALGKWEKDTALPSLDNLQALAAALDVSVDG 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + + S L R ++ D + R++ Sbjct: 61 LLGTARPGGTPEPS------------LTLDTLRALLEARDAEKRRR 94 >gi|146276465|ref|YP_001166624.1| helix-turn-helix domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145554706|gb|ABP69319.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17025] Length = 132 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 11/124 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G++QE++ LG+ + +Q +E + A+RLQ ++ +L + + Sbjct: 17 GDRLAGAREAAGLTQEEMARRLGVRLKTLQSWEDDLAEPRANRLQMMAGMLNVSLRWLLT 76 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S + +L R +R + + L + + EK+ R Sbjct: 77 GEGDGVEGPSEPVVLPAE--GREALAELAR---------MRTQTLALAQEMGQLEKRMRA 125 Query: 136 IEEE 139 + + Sbjct: 126 LLRK 129 >gi|331091208|ref|ZP_08340049.1| hypothetical protein HMPREF9477_00692 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404655|gb|EGG84194.1| hypothetical protein HMPREF9477_00692 [Lachnospiraceae bacterium 2_1_46FAA] Length = 219 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GMSQE+L L + Q V K+E+ ++ A L ++ +LE +S Sbjct: 1 MIGENIKKYRRRKGMSQEELAVKLHVVRQTVSKWEQALSVPDAEVLMRMASLLEVSVSTL 60 Query: 74 FDVSPTVCSDI 84 + Sbjct: 61 LGSEIEDENSE 71 >gi|315031865|gb|EFT43797.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315171137|gb|EFU15154.1| helix-turn-helix protein [Enterococcus faecalis TX1342] Length = 184 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++IR RM +SQ +L L ++ Q + +E G R L IS + P+ F Sbjct: 21 GEKIRKYRMEKNLSQVELSSILLVSRQTISNWENGRTRPEMENLVLISNFFDVPLEVFLS 80 Query: 76 VSPTVCSDISSE 87 + +E Sbjct: 81 EDISEIKKQHTE 92 >gi|293385315|ref|ZP_06631128.1| DNA-binding protein [Enterococcus faecalis R712] gi|293386573|ref|ZP_06631156.1| DNA-binding protein [Enterococcus faecalis S613] gi|312908107|ref|ZP_07767087.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312979000|ref|ZP_07790720.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|291077421|gb|EFE14785.1| DNA-binding protein [Enterococcus faecalis R712] gi|291083978|gb|EFE20941.1| DNA-binding protein [Enterococcus faecalis S613] gi|310625918|gb|EFQ09201.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311288179|gb|EFQ66735.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 320 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 3/104 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R +GM+Q+ L E L Q + K+E G L I L I Sbjct: 19 IGNKLKEARENMGMTQQVLAEKLDENPQYISKWENGKMIPPTHLLPEICSHLNISIDDLL 78 Query: 75 DVSP---TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 D + NV++ ++ + + + I+ +V Sbjct: 79 DNRRKHIEKSERLIDLGKNVLELVNEKSPKEFYKKYQLINKEQV 122 >gi|118468644|ref|YP_885309.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118169931|gb|ABK70827.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length = 478 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 1/126 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRSERGFSQAALAQMLDISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D ++ L + K+ + ++ L R + + Sbjct: 65 SPQDDTRLVAELREVTLDRDLGASDVDLTEV-ADMVASHPKLARAMVNLHRRYRLATTQL 123 Query: 134 RTIEEE 139 E+ Sbjct: 124 AAATED 129 >gi|229490209|ref|ZP_04384056.1| DNA-binding protein [Rhodococcus erythropolis SK121] gi|229322957|gb|EEN88731.1| DNA-binding protein [Rhodococcus erythropolis SK121] Length = 470 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L + L I+ + + E V + L ISEV +FF Sbjct: 5 FVGVRLRQLRTERGLSQASLAKTLEISASYLNQIEHDVRPLTVPVLLRISEVFGVDTTFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E + D ++ + + ++ + R ++ + Sbjct: 65 SPQDDTRLIAEMREVALDQEMGIDADAHEIAEMVS--THPGLAKAMVNMHRRFRNTTAQL 122 Query: 134 RTIEEE 139 E+ Sbjct: 123 AAATED 128 >gi|150378060|ref|YP_001314655.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032607|gb|ABR64722.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 148 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 44/77 (57%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + VD VG IR R I G+SQ+KLG+ +G+TFQQ+QKY+ G +R+ ASRL Sbjct: 1 MRRSQADKDVDATVGTNIRRFREISGISQKKLGDAIGVTFQQIQKYDSGKDRISASRLVE 60 Query: 62 ISEVLESPISFFFDVSP 78 + L ++ F Sbjct: 61 TARALGCDLNSLFAGIE 77 >gi|237802182|ref|ZP_04590643.1| transcriptional regulator, XRE family protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331025039|gb|EGI05095.1| transcriptional regulator, XRE family protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 160 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 33/87 (37%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + G R+R R+ GMSQE + I + + E+G +Q ++E L Sbjct: 1 MKTSLRKRFGLRVRELRIASGMSQEAFADHASIARSYMSRIERGGANPSLDAIQVLAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMD 93 F++ S + E D Sbjct: 61 GVDAGALFEIVEPATSYDAVEVPYAED 87 >gi|215425689|ref|ZP_03423608.1| transcriptional regulatory protein [Mycobacterium tuberculosis T92] Length = 299 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D D ++ + + ++ L R + + Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIAIDQHEVAEMVSA--HPGLARAVVNLHRRYRITTARL 122 Query: 134 RTIEEE 139 EE Sbjct: 123 AAATEE 128 >gi|227519769|ref|ZP_03949818.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227072857|gb|EEI10820.1| transcriptional regulator [Enterococcus faecalis TX0104] Length = 183 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGITGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + + + V R F D + R Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQHSEDHSY----RVFNYYSDNQKR 104 >gi|229829934|ref|ZP_04456003.1| hypothetical protein GCWU000342_02040 [Shuttleworthia satelles DSM 14600] gi|229791232|gb|EEP27346.1| hypothetical protein GCWU000342_02040 [Shuttleworthia satelles DSM 14600] Length = 211 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 39/92 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +IR R+ ++QE+ E LGI+ Q + +E + + +S++ + + Sbjct: 1 MDIGSKIRKSRVDAKLTQEQAAEALGISRQTISNWENEKSYPDIVSVLKMSDLYRVSLDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ S + + + S L Sbjct: 61 LLKGESSMSSYMDYLDESTNQVKSRRRLSALI 92 >gi|118472940|ref|YP_888581.1| regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118174227|gb|ABK75123.1| regulatory protein [Mycobacterium smegmatis str. MC2 155] Length = 192 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 3/118 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + VD V +R+R R G++ E + I + + E G R+ L Sbjct: 1 MDAPGAEHDVDALVRQRLRELRTERGLTLEDVASRAQIDVSTLSRLESGKRRLALDHLPR 60 Query: 62 ISEVLESPISFFF---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ L + ++ +N+ + T G + +I + R Sbjct: 61 LATALSVTTDDLLRAPEAEDPRVRGTATTRDNITYWPLTRHGPANGLHAYKIRISEQR 118 >gi|315144810|gb|EFT88826.1| helix-turn-helix protein [Enterococcus faecalis TX2141] Length = 183 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 4/106 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R ++ ++L G++ + + EKG + + IS L P Sbjct: 3 INTIIGNNLKKIRQEKKLTLDELAGVTGVSKGMLSQIEKGTTNPTINTIWKISNGLNVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + + + V R F D + R Sbjct: 63 TYLLEDDYVKENPVVKKTETVTQHSEDHSY----RVFNYYSDNQER 104 >gi|316933837|ref|YP_004108819.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601551|gb|ADU44086.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 152 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 2/105 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D + R+R+ R+ G+SQEK E LG++FQQVQKYE G NR+ +L ++ + PI Sbjct: 27 IDSRIAARLRVARIEAGLSQEKTAEALGLSFQQVQKYESGKNRISPGKLAVLAALYGKPI 86 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + F+ + S + + + + G ++ F+ D Sbjct: 87 ASFYHELEQPPATTSRDLVERV--LESRTGRRMVLGFLGCGDDDQ 129 >gi|170718159|ref|YP_001785187.1| phage repressor [Haemophilus somnus 2336] gi|168826288|gb|ACA31659.1| putative phage repressor [Haemophilus somnus 2336] Length = 235 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR +R L +++ +L + + ++ +Q +E AS + I+ L ++ Sbjct: 11 IGNRIREQRERLNLTRPELAKAVDVSLSALQGWEMNEREPQASMIITIANELGVTPNYLL 70 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + ++ + + + I+ Sbjct: 71 TGENDQPKKTIERAVEKVKDLTENVVIMIA-SYSSIN 106 >gi|270307510|ref|YP_003329568.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS] gi|270153402|gb|ACZ61240.1| hypothetical protein DhcVS_67 [Dehalococcoides sp. VS] Length = 72 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 4/74 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K ++ G+RIR R G+SQE+L + G+ + E+G + Sbjct: 1 MMTEK----TIEQRFGERIRNLRKQAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIY 56 Query: 61 HISEVLESPISFFF 74 IS+ L+ P+S F Sbjct: 57 AISKALKVPVSDLF 70 >gi|227356569|ref|ZP_03840956.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|227163325|gb|EEI48252.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 113 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 43/82 (52%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P VGK+I R + G++ +L + +GI+ QQ +YE+G+NRV RL + Sbjct: 22 PASKMVGKKIAYYRRVNGLTLSELAKKIGISQQQQSRYERGINRVSLDRLYQYACFFGIS 81 Query: 70 ISFFFDVSPTVCSDISSEENNV 91 +S F + +I ++ +N+ Sbjct: 82 LSDLFQLDDEEKVEIENKISNM 103 >gi|325291680|ref|YP_004277544.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325059533|gb|ADY63224.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 197 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 2/93 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ N+ + ++ ++G RI+ R G++ ++L G++ + + E+G AS L Sbjct: 5 MMENED--HILERSIGDRIKTLRAQNGLTLDRLAAESGVSRAMISRIERGEASPTASLLA 62 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 I L +S FF S + + + + Sbjct: 63 RICAALGLSLSGFFAEDEEAVSPLVKKRDQQLW 95 >gi|228925132|ref|ZP_04088242.1| hypothetical protein bthur0011_60040 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834471|gb|EEM80000.1| hypothetical protein bthur0011_60040 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 108 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 34/90 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ KR+ R G +Q + CL I +E G A + I+E+ I Sbjct: 3 HLSKRLAELRKKRGYTQADISHCLNIARTTYANWEYGKADPDADSIMRIAELHNISIDEL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQL 103 F + + S + S + + D + L Sbjct: 63 FGRNNPLESKLESIKVALADIPAEKQQEAL 92 >gi|162457008|ref|YP_001619375.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161167590|emb|CAN98895.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 476 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 1/126 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R M+Q L E LG++ + E + A L ++++ + + F Sbjct: 7 LGAKVRALRRREHMTQVDLAERLGVSASYLNLIENNRRPLTAPLLIRLAQIFQLDLQNFA 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + E F S R + V + ++ L R+ ++ + Sbjct: 67 SEEDVRLTADLHEVFGDPIFESHGLTNADLRELVA-ASPNVARAVLTLYRTYATTRESLD 125 Query: 135 TIEEEC 140 T+ E Sbjct: 126 TLGERL 131 >gi|302334962|ref|YP_003800169.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301318802|gb|ADK67289.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 198 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R G++Q++L E L ++ Q + +E G + + ++ + Sbjct: 1 MEIGQRMRALRQGAGLTQDELAERLYVSRQTISNWETGKSYPDVESVSLACDLFDVSADA 60 Query: 73 FFDVSPTVCSDISSEEN 89 SEE+ Sbjct: 61 LLKGDIMEMGKRVSEED 77 >gi|119387120|ref|YP_918175.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119377715|gb|ABL72479.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 213 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 34/86 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +VG R++ R MSQ +L E G+ QV E G + + L+ I L +S Sbjct: 24 DFDVGARLKELRSAANMSQRQLAEASGVPHGQVSMIETGRSSPSVASLRKILGGLGVTMS 83 Query: 72 FFFDVSPTVCSDISSEENNVMDFIST 97 FF+ + D S Sbjct: 84 EFFEPDLPQSPQPFFTPAELRDLTSR 109 >gi|291539786|emb|CBL12897.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 223 Score = 56.0 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 31/65 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I+ RM LG +QE+L LG+T Q + +E + +L IS+ L I Sbjct: 4 ICIGKNIKELRMKLGYTQEQLANELGVTRQTLSNWECEKTIPDSMQLNEISKRLNISIEC 63 Query: 73 FFDVS 77 Sbjct: 64 IMGEE 68 >gi|304403726|ref|ZP_07385388.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304346704|gb|EFM12536.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 116 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 43/89 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G++Q++L E + + E+G V L I++ L+ +S FF Sbjct: 8 VGARIREIRKSKGLTQDQLAEISQFHYSYIGGVERGERNVSLENLAKIADALQVKLSLFF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 D S + SE + ++ +S D Q+ Sbjct: 68 DYEEPKSSAVDSELDEIIYLLSKRDVKQI 96 >gi|160939733|ref|ZP_02087080.1| hypothetical protein CLOBOL_04624 [Clostridium bolteae ATCC BAA-613] gi|158437167|gb|EDP14932.1| hypothetical protein CLOBOL_04624 [Clostridium bolteae ATCC BAA-613] Length = 185 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 39/75 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R G SQE+L + L ++ Q + K+E G + + +S++ I F + Sbjct: 4 GEKLKFLRKQKGFSQERLSQQLTVSRQAISKWELGESLPDTENVIQLSKLFSVSIDFLLN 63 Query: 76 VSPTVCSDISSEENN 90 + +DI + ++N Sbjct: 64 DNICSEADIPAVQHN 78 >gi|321272347|gb|ADW80228.1| putative transcriptional regulator [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB] Length = 306 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 56/127 (44%), Gaps = 7/127 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D VG++++ R+ G +Q+ L E +G+ + + YE G ++ +L I+E L Sbjct: 5 MEKSLDYEVGQKVKNWRLERGYTQKDLAEKVGVKYWAILXYEXGNRKIPIKKLYAIAEAL 64 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI------QIDDVKVRQKI- 119 + E+ +++ + +L+ F ++ + + R+ + Sbjct: 65 SVNVKGLVCGETLPNEKRYFEDEXILNLVKGYKDKELSEVFYLLTKFIRLSEERSRKAVK 124 Query: 120 IELVRSI 126 +E+ R + Sbjct: 125 MEVARGL 131 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 27/150 (18%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 KIP P VG+RI+ R+I G +Q+ L +GIT Q + +YE+G + V L I Sbjct: 153 EENKIPVP--YKVGQRIKEWRLIRGYTQKDLANKVGITNQGIYEYEQGRSAVSLEMLDEI 210 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++VL I + D + +L + +I+ ++R L Sbjct: 211 AKVLSISIIDLL-------------PESDEDSEAEEKLSKLIEEYKKIESRELRNV---L 254 Query: 123 VRSIVS---------SEKKYRTIEEECMVE 143 ++S++ E K + + E Sbjct: 255 IKSLLEGIHVCREKVREAKKIEVARNLVKE 284 >gi|290968573|ref|ZP_06560111.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L] gi|290781226|gb|EFD93816.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L] Length = 117 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 42/104 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I+ R G++Q + G G++ Q V +E G+ S L +++ + PI Sbjct: 1 MTLGQEIKFYRKKKGLTQTEFGAVFGMSKQAVYSWETGLYAPDISVLLKMADFFQIPICM 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 C D + ++ + ++ + + + + Sbjct: 61 LVGRPGVYCRDQEAAADHSDCTFVSKKDSRILQALHYLSPEEQQ 104 >gi|295106679|emb|CBL04222.1| transcriptional regulator, XRE family [Gordonibacter pamelaeae 7-10-1-b] Length = 76 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G RI+ R G+SQE+ +G++ + E G V A L+ I++ L Sbjct: 5 DIRSKIGLRIKELRAERGVSQEEFANLIGMSRSYFGEVETGKRNVAAVNLEKIAKGLGVS 64 Query: 70 ISFFFDVS 77 ++ FFD Sbjct: 65 LAEFFDSE 72 >gi|255280221|ref|ZP_05344776.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255269312|gb|EET62517.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 330 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 42/105 (40%), Gaps = 1/105 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L + L ++ Q V K+E G + +L +S++ + + Sbjct: 1 MILAEKIMDLRKKNGWSQEELAQQLRVSRQSVSKWEGGQSVPDLDKLLALSQIFGVTLDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + + D + ++ F+ RQ Sbjct: 61 LVKDEISSEEVQYTATDIPEDDLP-HVSVEEADAFLATVQTAARQ 104 >gi|302875363|ref|YP_003843996.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307688943|ref|ZP_07631389.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578220|gb|ADL52232.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 226 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 2/90 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G++QE+ E +G++ Q V K+E G + RL IS + + I Sbjct: 5 QKLQALRKEKGLTQEEFAETIGVSRQAVAKWEAGQSYPDLDRLIEISNLYKVSIDKLVKD 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRY 106 CS +EE D+ L + Sbjct: 65 CKENCS--FNEEKTYKDYADNEMICFLCKA 92 >gi|162448119|ref|YP_001621251.1| membrane-anchored DNA-binding protein [Acholeplasma laidlawii PG-8A] gi|161986226|gb|ABX81875.1| membrane-anchored DNA-binding protein, putative [Acholeplasma laidlawii PG-8A] Length = 231 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R +QE+LGE L ++ Q + K+E +L +S++ ++ + + Sbjct: 4 GQRLAKLRKDHNYTQEELGELLDVSRQSISKWESDQAFPETQKLIELSKLYQTSVDYLLG 63 Query: 76 VSPTVCSDISSEENNVMDF 94 + + + Sbjct: 64 NENEHTQSNIGDSTHTNEP 82 >gi|186704310|dbj|BAG30963.1| unnamed protein product [Comamonas testosteroni] Length = 495 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 4/118 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L + L ++ + + E+ + + L I VL I F + Sbjct: 7 GVRLRSLRAERGLTQAALAQALELSPSYLNQIEQDQRPLTVAVLLKIHRVLGVDIQQFSE 66 Query: 76 VSPTVCSDISSEE-NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS-IVSSEK 131 + + +L ++ ++ Q ++ + + + +E+ Sbjct: 67 DEEARLLAQLRDAVAAMPQPEGAVPLPELREVAAKL--PQLAQMLLAMHQRHLADAER 122 >gi|206971646|ref|ZP_03232596.1| transcriptional regulator Xre [Bacillus cereus AH1134] gi|206733631|gb|EDZ50803.1| transcriptional regulator Xre [Bacillus cereus AH1134] Length = 117 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 7/120 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++L G++Q++L + +G++ V Y +G G LQ I+ L + + Sbjct: 5 QRLKLLIEKRGITQQQLADAIGVSHVSVYNYVEGKKSPGTRTLQKIANHLNVTTDYLLGL 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 S + + D T + ++ + + + + R+K +E + VS EK I Sbjct: 65 SDSP------DLTADQDLQLTKEAQEILQIINDLPEEQ-RKKALEQLEMFVSYEKAKGNI 117 >gi|221068405|ref|ZP_03544510.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220713428|gb|EED68796.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 491 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 46/122 (37%), Gaps = 3/122 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L + L ++ + + E+ + S L I VL I F + Sbjct: 7 GVRLRSLRAERGLTQVALAQALELSPSYLNQIEQDQRPLTVSVLLRIHRVLGVDIQQFSE 66 Query: 76 VSPTVCSDISSEE-NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + +L ++ ++ Q ++ + + ++ ++ Sbjct: 67 DEEARLLAQLRDAVAAMPLPEAAVPLPELREVAARL--PQLAQALLAIHQRHLADAQRLE 124 Query: 135 TI 136 + Sbjct: 125 AL 126 >gi|300173352|ref|YP_003772518.1| helix-turn-helix domain-containing protein [Leuconostoc gasicomitatum LMG 18811] gi|299887731|emb|CBL91699.1| helix-turn-helix domain protein [Leuconostoc gasicomitatum LMG 18811] Length = 184 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + VG+ ++ R+ M+ + + E ++ + E G L IS L PI Sbjct: 2 IGKRVGENLKKVRIEKNMTLDNVAEMTDVSKPTLHNIETGKTSPSIDNLWKISSGLGIPI 61 Query: 71 SFFFD 75 ++FF Sbjct: 62 NYFFS 66 >gi|255600423|ref|XP_002537454.1| conserved hypothetical protein [Ricinus communis] gi|223516285|gb|EEF24927.1| conserved hypothetical protein [Ricinus communis] Length = 89 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 29/87 (33%), Positives = 50/87 (57%), Gaps = 3/87 (3%) Query: 44 VQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISS---EENNVMDFISTPDG 100 +QKYE+G NR+ AS+L I+ L++P+S FF+ D ++ F STP+G Sbjct: 1 IQKYERGDNRISASKLYAIAVFLKTPVSVFFEGLAKPGEDGATVDGSAQAAQMFASTPEG 60 Query: 101 LQLNRYFIQIDDVKVRQKIIELVRSIV 127 ++L QI +R+ I+E++R++ Sbjct: 61 IELAGLLPQIGSQALRRHIVEIIRALA 87 >gi|322434546|ref|YP_004216758.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321162273|gb|ADW67978.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 135 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 5/120 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +N+G IR R+ GMSQ + + G+ + + E G LQ I+ L+ Sbjct: 18 SISMNIGTTIRDYRLQRGMSQGDIEKRTGLLRCYLSRVENGHTVPSLETLQKIAGALDLQ 77 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 +S FF + + T + + R+ ++ +VR S+ Sbjct: 78 LSQFFAEDQVQKEVSTLNLSEEEIRFLTQ-----VQRYSAHLSDSDRRLLLAMVRKFAST 132 >gi|152999279|ref|YP_001364960.1| putative phage repressor [Shewanella baltica OS185] gi|151363897|gb|ABS06897.1| putative phage repressor [Shewanella baltica OS185] Length = 240 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 42/87 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR +R LG++Q+ LG +G++ V ++EK + L +++ L+ +S+ Sbjct: 13 LGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFALAKSLKCDLSWLL 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 + + ++E D L Sbjct: 73 NGQIATKPESNAEWAGGFDLWDNDSPL 99 >gi|57235098|ref|YP_182252.1| DNA-binding protein [Dehalococcoides ethenogenes 195] gi|57225546|gb|AAW40603.1| DNA-binding protein [Dehalococcoides ethenogenes 195] Length = 72 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K ++ G+RIR R G+SQE+L + G+ + E+G + Sbjct: 1 MMTEK----TIEQRFGERIRDLRKKAGVSQEELADRAGVHRTYLGGIERGERNPSLKNIY 56 Query: 61 HISEVLESPISFFF 74 IS L+ P+S F Sbjct: 57 AISRALKVPVSDLF 70 >gi|229192127|ref|ZP_04319095.1| Transcriptional regulator, Cro/CI [Bacillus cereus ATCC 10876] gi|228591334|gb|EEK49185.1| Transcriptional regulator, Cro/CI [Bacillus cereus ATCC 10876] Length = 118 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 12/123 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R ++QEK+GE +G++ Q + KYEKG ++ +++ P + F Sbjct: 4 IGERIFELRKERKLTQEKIGENIGVSKQTISKYEKGTKIPSRENIEKLADFFNVPTDYLF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR----SIVSSE 130 S ++ + + + + + + + L+ ++ E Sbjct: 64 GKSDNSIKSSNNIKEIFEN--------DELHWDGRKLSPEEIESVKALLEVAIQRMLKQE 115 Query: 131 KKY 133 KK Sbjct: 116 KKD 118 >gi|260664721|ref|ZP_05865573.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] gi|260561786|gb|EEX27758.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] Length = 103 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 38/102 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R ++Q++L + L + + +E G N L+ +S + + Sbjct: 1 MNISSRIKYLRNEHHLTQKELAKMLNVKPTTISGWELGRNEPSIDTLKKLSSLFNVSTEY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + I + +V+ + P + I + Sbjct: 61 LIGGEDNSSNTIDLKTTDVLSYDGKPVSPEDLAIIRAILERN 102 >gi|332654058|ref|ZP_08419802.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332517144|gb|EGJ46749.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 223 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K IR R G++QE+L + L +T Q V +E G R LQ I++ L + Sbjct: 7 IAKHIRSLRKRAGLTQEELAQRLYVTRQTVSLWELGKTRPDVETLQAIADCLGVDLLQVL 66 Query: 75 DVSPTVCSDISS 86 ++ Sbjct: 67 YGPEQTAPQSTT 78 >gi|317508458|ref|ZP_07966127.1| hypothetical protein HMPREF9336_02499 [Segniliparus rugosus ATCC BAA-974] gi|316253236|gb|EFV12637.1| hypothetical protein HMPREF9336_02499 [Segniliparus rugosus ATCC BAA-974] Length = 486 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 6/127 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R+ G+SQ L L I+ + + E V + L +SE L FF Sbjct: 20 YVGPRLRQLRVERGLSQVALAADLAISPSYLNQIEHDVRPITMPLLLRLSEKLGVDTEFF 79 Query: 74 FDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 E + +D ++P+ + K + +++L Sbjct: 80 TAQEEARLVAEIREVAMDTGVDIDTSPESVAEVVSAH----PKFARAMLQLYHRYRELAD 135 Query: 132 KYRTIEE 138 + + E Sbjct: 136 QVAALGE 142 >gi|167749516|ref|ZP_02421643.1| hypothetical protein EUBSIR_00472 [Eubacterium siraeum DSM 15702] gi|167657544|gb|EDS01674.1| hypothetical protein EUBSIR_00472 [Eubacterium siraeum DSM 15702] Length = 159 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 9/120 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G++Q+ L E LGI+ QKYE+ L I++ + Sbjct: 3 EQLQQLRKSRGLTQDDLAEILGISLSSYQKYERDAISPSYETLCKIADFYHVTTDYLLGR 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 P + D + P+ + VR I++ ++ + + KK + + Sbjct: 63 EPAT---------DPFDMLQLPEDQKSVMERFASFPDDVRAIILDAIKELAEAAKKRQRL 113 >gi|119491284|ref|ZP_01623338.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Lyngbya sp. PCC 8106] gi|119453448|gb|EAW34610.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Lyngbya sp. PCC 8106] Length = 377 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 4/113 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D + R++ R LG+SQ+ L + +G++ Q + E G A +++ L + Sbjct: 4 DNELQNRLKQIRTRLGLSQQDLAKVVGVSRQTISGVESGQYAPSARIALRLAKALGCQME 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN----RYFIQIDDVKVRQKII 120 F + ++ V L + + + R ++I Sbjct: 64 DLFWLEEDCLRVEATPAQAVPVDQDVRFTLARVGGKLMAYPLLGEDAFRTEMI 116 >gi|149187669|ref|ZP_01865966.1| probable transcriptional regulator [Vibrio shilonii AK1] gi|148838549|gb|EDL55489.1| probable transcriptional regulator [Vibrio shilonii AK1] Length = 180 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 46/108 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VGK+++ R + GMSQ +L + G+T + + E+ + L+ I + + + Sbjct: 1 MDVGKQLKTIRTMRGMSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 FF + DI + D + L + + V ++I Sbjct: 61 FFTLDVEPKDDIFFSAEQMADLGDGQIKMLLVGAKREGRQLAVLREIY 108 >gi|319935773|ref|ZP_08010202.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319809208|gb|EFW05657.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 255 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I + ++ R G SQE L + LGI+ Q V K+E+ L ++++ + Sbjct: 1 MNIEIANKLLQLRKEKGYSQEALAQELGISRQAVSKWERAEASPDTDNLIELAKLYGISL 60 Query: 71 SFFFDVSPTVCSDISSEENNVM 92 PT + S++ M Sbjct: 61 DQLLLHEPTETEETISDKTEDM 82 >gi|319793072|ref|YP_004154712.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315595535|gb|ADU36601.1| transcriptional regulator, XRE family [Variovorax paradoxus EPS] Length = 503 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 2/125 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G+SQ L + LG++ + + E+ + L + L I F + Sbjct: 7 GVRLRSLREERGLSQLALAQQLGLSPSYLNQIEQNQRPLTVPVLLRLHATLGVDIQAFSE 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E +L Q+ V + ++ L + + ++ Sbjct: 67 DEEARLVASLREALADNPGGDAVALAELREVATQM--PAVGRALVALHQRHRDAMERLEA 124 Query: 136 IEEEC 140 + E Sbjct: 125 LAGEL 129 >gi|253988215|ref|YP_003039571.1| hypothetical protein PAU_00734 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638791|emb|CAR67408.1| hypothetical protein PA-RVA13-1279 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779665|emb|CAQ82826.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 101 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 29/60 (48%), Positives = 44/60 (73%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI+ RR LGM+ KL +GI+ QQ+ +YE+G+NR+ S L I+ +L++PI++FF Sbjct: 10 VGKRIQKRRKELGMTAVKLAGQIGISQQQLSRYERGINRIDLSHLVQIASILDTPINWFF 69 >gi|196048249|ref|ZP_03115426.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196020986|gb|EDX59716.1| DNA-binding protein [Bacillus cereus 03BB108] Length = 108 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ KR+ R G +Q + L I +E G A + I+E+ I Sbjct: 3 HLSKRLAELRKKRGYTQADISHRLNIARTTYANWEYGKADPDADSIMRIAELHNISIDEL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQL 103 F + + S + S + + D + L Sbjct: 63 FGRNNPLESKLESIKVALADIPAEKQQEAL 92 >gi|329889881|ref|ZP_08268224.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845182|gb|EGF94746.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 133 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 59/126 (46%), Gaps = 13/126 (10%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + + +G+R+R RR LG+SQ LG +G++ QQ+QKYE G N V ASRL Sbjct: 1 MPDSQSKQDYNRAIGERVRRRRKELGLSQTALGAKIGVSCQQIQKYENGRNSVAASRLHQ 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 +S ++ + + + + +L + + + + + R+ ++ Sbjct: 61 LS------------LALATTAPALIGLKSWDEGEDGGERARLLQAWSVLPNHQ-REPLLR 107 Query: 122 LVRSIV 127 V ++ Sbjct: 108 YVEALA 113 >gi|328948780|ref|YP_004366117.1| hypothetical protein Tresu_1938 [Treponema succinifaciens DSM 2489] gi|328449104|gb|AEB14820.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 151 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 31/58 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GK+IR R LGM+QE+L L +T Q + +E+ VN + L+ I + + F Sbjct: 11 GKQIRHLRTQLGMTQEELAGELNVTRQALSNWERDVNEPDLNMLKKICFLFGVNMDDF 68 >gi|292557941|gb|ADE30942.1| Helix-turn-helix type 3 [Streptococcus suis GZ1] Length = 149 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 31/58 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GK+IR R LGM+QE+L L +T Q + +E+ VN + L+ I + + F Sbjct: 11 GKQIRHLRTQLGMTQEELAGELNVTRQALSNWERDVNEPDLNMLKKICFLFGVNMDDF 68 >gi|86559618|ref|YP_473438.1| LexA repressor [Clostridium perfringens] gi|86475890|dbj|BAE79065.1| LexA repressor [Clostridium perfringens] Length = 330 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV- 76 I+ R +SQ +L E LG+ + YE+ L +S+++ I + Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMNRSIDSLLGLN 71 Query: 77 -SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRSIVSSEKKYR 134 S +D+++ + + FI + N+ F +++ K+R +++ ++ + + Sbjct: 72 HSTENTNDLNNSDLSKKIFILNKLIEKNNQSFKELESSKLRTERMFNELKRTRNRAENDI 131 Query: 135 TIEEECMVE 143 + +E E Sbjct: 132 KLFQELSKE 140 >gi|84499939|ref|ZP_00998205.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84391873|gb|EAQ04141.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 211 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/134 (13%), Positives = 49/134 (36%), Gaps = 8/134 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++R R G++ +++ + G+ + K E L ++ L+ +S + Sbjct: 18 GQKVRTLRRGKGLTLQQVADRAGMAGSTISKIENSNLSPTFDGLLKLARGLDVDLSTLLE 77 Query: 76 VSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKIIEL------VRSIV 127 + + +D ++ Y + + ++QK+I+ R + Sbjct: 78 GEGGATATSPAPSIGRLDVTRAASRGAHDAATYIYEPLAMGLKQKLIDATYVVVKARDVA 137 Query: 128 SSEKKYRTIEEECM 141 ++ EE + Sbjct: 138 EFDQLVSHPGEELI 151 >gi|307266068|ref|ZP_07547614.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|306918937|gb|EFN49165.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] Length = 182 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+++ R G++ +++GE +G++ KYEK L I++ + + F Sbjct: 1 MIGERLKMLRKEKGLTMKEIGEIIGVSDAAWTKYEKNRAEPSIESLIKIADYFQVSLDFL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + N +F+ + +I D ++ LV ++ +S KY Sbjct: 61 LGRTNIREPQFVEKANIQSEFLKEFEW-------SKIGDPS---QMYFLVENLSTSIGKY 110 Query: 134 RT 135 Sbjct: 111 NE 112 >gi|77464338|ref|YP_353842.1| XRE family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126463181|ref|YP_001044295.1| helix-turn-helix domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|221640224|ref|YP_002526486.1| Helix-turn-helix domain-containing protein [Rhodobacter sphaeroides KD131] gi|332559230|ref|ZP_08413552.1| Helix-turn-helix domain protein [Rhodobacter sphaeroides WS8N] gi|77388756|gb|ABA79941.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides 2.4.1] gi|126104845|gb|ABN77523.1| helix-turn-helix domain protein [Rhodobacter sphaeroides ATCC 17029] gi|221161005|gb|ACM01985.1| Helix-turn-helix domain protein [Rhodobacter sphaeroides KD131] gi|332276942|gb|EGJ22257.1| Helix-turn-helix domain protein [Rhodobacter sphaeroides WS8N] Length = 132 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 51/124 (41%), Gaps = 11/124 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G++QE++ LG+ + +Q +E + A+RLQ ++ +L + + Sbjct: 17 GDRLAGAREAAGLTQEEMARRLGVRLKTLQSWEDDLAEPRANRLQMMAGMLNVSLRWLLT 76 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S +++ L ++R +++ L + + EK+ R Sbjct: 77 GEGEGAEGPSEPA-----ILTSEGREALAEL------ARMRTQMLALAQEMGQLEKRMRA 125 Query: 136 IEEE 139 + + Sbjct: 126 LLRK 129 >gi|239626413|ref|ZP_04669444.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516559|gb|EEQ56425.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 232 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 33/81 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK IR R MSQE+L L +T Q V +E G + L+ I+ ++ I Sbjct: 4 IGKNIRNLRKQKKMSQEQLAGLLHVTRQAVSNWETGRTQPDIETLEAIAGAFDTDILMVL 63 Query: 75 DVSPTVCSDISSEENNVMDFI 95 +D + + I Sbjct: 64 YGRRQEEADAETRQARRKQCI 84 >gi|120401814|ref|YP_951643.1| hypothetical protein Mvan_0799 [Mycobacterium vanbaalenii PYR-1] gi|119954632|gb|ABM11637.1| protein of unknown function DUF955 [Mycobacterium vanbaalenii PYR-1] Length = 475 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 2/112 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG RIR R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGARIRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 T E D D ++ + + ++ L R Sbjct: 65 ASQDDTRLIAELREVLMDRDLDVDVDPAEVADMVGS--HPALARAMVNLHRR 114 >gi|254719638|ref|ZP_05181449.1| hypothetical protein Bru83_08855 [Brucella sp. 83/13] gi|265984647|ref|ZP_06097382.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306837728|ref|ZP_07470596.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653] gi|264663239|gb|EEZ33500.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306407184|gb|EFM63395.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653] Length = 470 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 8/139 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K I G RIR R G++Q + E LGI+ + E+ + L Sbjct: 1 MSERK------IFTGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLK 54 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ V + + S + + + ++ + P +L + V I++ Sbjct: 55 LASVYKLDLDSLQAESGSTVTGLKEVFSDPLLTGELPGDQELVEIGEAAPNAAV--GIMK 112 Query: 122 LVRSIVSSEKKYRTIEEEC 140 L R+ +++ + + Sbjct: 113 LYRAYREQQQRLSDLSKLL 131 >gi|58699659|ref|ZP_00374339.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58533824|gb|EAL58143.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 226 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 10/129 (7%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+EVL Sbjct: 14 SIRYKIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVG 73 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I VS + EE L L R + I+D ++R+ L + Sbjct: 74 IIDLIPVSSEKICLKNEEEE----------ILNLVRKYKTINDQELRKVFYLLTKFTRVG 123 Query: 130 EKKYRTIEE 138 EK + E+ Sbjct: 124 EKSSKKAEK 132 Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GK+I+ R++ +Q+ L E + T ++ YE+G + +L I+E L Sbjct: 167 SIYYQIGKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIAETLSIS 226 >gi|99078239|ref|YP_611497.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99035377|gb|ABF62235.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 190 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 33/95 (34%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D ++G R+R R +SQ L + G+ + E G L+ I + + +S Sbjct: 10 DEDLGPRLRSVREKANLSQRALAKKTGVPNSTISLIESGKMNPSVGALRRILDGIPISLS 69 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 FF P ++ + L+ Sbjct: 70 DFFAFEPETEKASFYAAEDLTEIGKGKVSLKQVGA 104 >gi|329117486|ref|ZP_08246203.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907891|gb|EGE54805.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 194 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK++ R G+SQE L E + ++ Q + +E + L ++ + + + Sbjct: 1 MELGKKLSSCRKKAGLSQEDLAEKIYVSRQTISNWENDKSYPDIHSLIALANLFQLSLDQ 60 Query: 73 FFDVSPTVCSDISSEEN 89 + I ++ Sbjct: 61 LVEGDIDEMKKIVQSDD 77 >gi|257880858|ref|ZP_05660511.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|260562694|ref|ZP_05833195.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|261209352|ref|ZP_05923730.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|257815086|gb|EEV43844.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|260072923|gb|EEW61277.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|260076680|gb|EEW64429.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] Length = 153 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R+ G +QE + +T Q + K+E L+ I E + I+ Sbjct: 4 LGSKLRELRVKKGYTQEYVARKFNVTRQTISKWENNKTTPDIETLKKICEFYSTNINSIL 63 Query: 75 DVSPTV 80 + + Sbjct: 64 NEDNSK 69 >gi|269929183|ref|YP_003321504.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269788540|gb|ACZ40682.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 367 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 55/125 (44%), Gaps = 4/125 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R R G + +L G++ QV + E+G N L +++ LE I++F Sbjct: 17 QIGPALRALRERRGWTLAQLAAESGVSRSQVWRLEQGQNVPSYLTLARLAKALEVEINYF 76 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + +++ + ++ + + P+ F ++ R +++ +R + +++ Sbjct: 77 -TSFESTATELDRDLSSYLRRVGVPE--DTWAEFGRLGLEA-RGALLDALRRLTEPQEQV 132 Query: 134 RTIEE 138 + + Sbjct: 133 ASRQR 137 >gi|169342435|ref|ZP_02863498.1| LexA repressor [Clostridium perfringens C str. JGS1495] gi|169299434|gb|EDS81499.1| LexA repressor [Clostridium perfringens C str. JGS1495] Length = 330 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV- 76 I+ R +SQ +L E LG+ + YE+ L +S+++ I + Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMNRSIDSLLGLN 71 Query: 77 -SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRSIVSSEKKYR 134 S +D+++ + + FI + N+ F +++ K+R +++ ++ + + Sbjct: 72 HSTENTNDLNNSDLSKKIFILNKLIEKNNQSFKELESSKLRTERMFNELKRTRNRAENDI 131 Query: 135 TIEEECMVE 143 + +E E Sbjct: 132 KLFQELSKE 140 >gi|163792697|ref|ZP_02186674.1| transcriptional regulator, Cro/CI family protein [alpha proteobacterium BAL199] gi|159182402|gb|EDP66911.1| transcriptional regulator, Cro/CI family protein [alpha proteobacterium BAL199] Length = 192 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G++ E L G+T + K E G + L I++ + +++FF Sbjct: 5 IGPRLRQLRKRRGVTLETLAAGTGLTKGYLSKIETGKMVPPIATLSRIAQAIGCDMAYFF 64 >gi|153953935|ref|YP_001394700.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219854549|ref|YP_002471671.1| hypothetical protein CKR_1206 [Clostridium kluyveri NBRC 12016] gi|146346816|gb|EDK33352.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219568273|dbj|BAH06257.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 179 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 7/118 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G +IR R +S E+L E ++ + + E+ + + L I++ L I++ Sbjct: 1 MEFGLKIRKLRQEKSISIEQLAERAKLSTGLISQVERNITGPSVTTLWKIAKALNVSINY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FFD + + ++ + + +L ++ KI L+ I + E Sbjct: 61 FFDEYEEKDNVVRKDKRKTIILPDSKITYELL-------SPNLKGKIEYLLVEIEAGE 111 >gi|251778650|ref|ZP_04821570.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082965|gb|EES48855.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 96 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 3/95 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R G++Q++L E + ++ V YE S L IS+ + + Sbjct: 1 MLGDRIKSLRKEQGITQDQLAEYINVSRSSVNGYENDGVEPSLSVLVKISDRFNVSLDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + + +++ + +L + Sbjct: 61 LERTEEKHNINLLDKDTKCFLL---KVHELVNNYK 92 >gi|307151755|ref|YP_003887139.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981983|gb|ADN13864.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 78 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 6 KIP--NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P N + G R+R R G+SQE L + + + E+G + ++ I+ Sbjct: 2 KTPDDNDIRKQFGNRLRYLRQTRGLSQEALADLCNLDRSYIGGVERGERNISLLNIKKIA 61 Query: 64 EVLESPISFFFDVSPTV 80 + L FFD + Sbjct: 62 DALGISPKEFFDEQDSR 78 >gi|60682884|ref|YP_213028.1| putative DNA-binding protein [Bacteroides fragilis NCTC 9343] gi|253566007|ref|ZP_04843461.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|60494318|emb|CAH09113.1| putative DNA-binding protein [Bacteroides fragilis NCTC 9343] gi|251945111|gb|EES85549.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 151 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 2/141 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++ V+++ G IR R+ + Q+ L + +T V KYEK + + L Sbjct: 1 METEEEIQNVNVHHGHNIRRTRIEKNIKQDALAALVNMTQPNVSKYEK-MRVIEDEMLNR 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + L P+ + + S + NNV D + G + KI Sbjct: 60 FARALNVPVEYLKTLEEDAPSVVFENITNNVHDNKDSSMGSTGYNNDSITNTFNPIDKIT 119 Query: 121 ELVRSIVSSEKKYRTIEEECM 141 EL ++ + + E+ + Sbjct: 120 ELYERLLKEKDEKYAALEKRI 140 >gi|332799793|ref|YP_004461292.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332697528|gb|AEE91985.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 127 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 4/121 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R + G++Q + + GI+ + E A+ L + L I + Sbjct: 7 IGERIKYARKLKGLTQNDIYKLTGISSGNLSDIENNKVLPSANALISLKRELGVSIDWIL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVRSIVSSEKK 132 V D ++ +P+ + + + ++D D + II++ + KK Sbjct: 67 TGEADVAFDKKQNKSPSDIGKLSPNEIDILLKYRKLDDVDKEEIDAIIDI--KLHRKNKK 124 Query: 133 Y 133 Y Sbjct: 125 Y 125 >gi|296115933|ref|ZP_06834556.1| transcriptional regulator Xre [Gluconacetobacter hansenii ATCC 23769] gi|295977505|gb|EFG84260.1| transcriptional regulator Xre [Gluconacetobacter hansenii ATCC 23769] Length = 482 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 44/122 (36%), Gaps = 1/122 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR +R +GM+Q L + LGI+ + + E + + L + + +F D Sbjct: 11 GSRIRHQRHRVGMTQSALAQRLGISASYLNQIEHDTRPLPITLLGALCTLFSVGADYFSD 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 T E F L +++ + + + L R+ + ++ Sbjct: 71 TEETRGMQAVREILADPVFDMDAIRLDSIHAAMRVA-PDLCAQFVRLYRAYLLRQEHAEA 129 Query: 136 IE 137 Sbjct: 130 AL 131 >gi|291544366|emb|CBL17475.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 322 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 36/109 (33%), Gaps = 5/109 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R G SQE+L + + ++ Q V K+E + ++ +S + + Sbjct: 6 KLIQLRKKSGWSQEELAQQMHVSRQSVSKWEGAQSVPDLEKMVQLSRLFHVTTDYLLKDE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E+ L+ F++ R +I + Sbjct: 66 EGEPEPAPGEDPGEP---LRRVSLEEASAFLEAKQRSAR--LIAFATML 109 >gi|291543337|emb|CBL16446.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Ruminococcus sp. 18P13] Length = 110 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G+RIR R G+SQEKL E G + + E+G ++ I+ ++ Sbjct: 2 SDIAKIIGQRIRNYRTQKGLSQEKLAELAGCHPTYIGQLERGEKNATLESVEKIASAMDI 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 +S FD S+ + D +++ + + + + + ++ + Sbjct: 62 SLSELFDKLGKSGSNNIA--AKCYDLVASKNEAEQKQLYKMLQEMDKYK 108 >gi|148380140|ref|YP_001254681.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153934013|ref|YP_001384438.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937509|ref|YP_001387974.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] gi|148289624|emb|CAL83727.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152930057|gb|ABS35557.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933423|gb|ABS38922.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] Length = 155 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 47/116 (40%), Gaps = 3/116 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+++ R G+SQE + E L ++ Q V K+E ++ + +SE+ + Sbjct: 1 MSLGEKLLYLRKKAGLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDY 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRS 125 + + I + + + + + I + +KI EL S Sbjct: 61 LISENYISGDVTGIEMIVDEIDWTGAWSKKYSILASYPGIKGINTYSEKISELYDS 116 >gi|148265766|ref|YP_001232472.1| putative prophage repressor [Geobacter uraniireducens Rf4] gi|146399266|gb|ABQ27899.1| putative prophage repressor [Geobacter uraniireducens Rf4] Length = 216 Score = 55.6 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 38/90 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI++G RI+ R M+Q++ + LGI + E+G + L + + + Sbjct: 9 DISIGLRIKELRQAKDMTQKEFADSLGIVQGFLSGIERGKKSPSDTLLIALCHLYKINKE 68 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGL 101 + + + + + +F++T L Sbjct: 69 WLYTGRGDMFGKTQLPDKLIEEFVTTRIPL 98 >gi|291546039|emb|CBL19147.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 318 Score = 55.6 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 50/127 (39%), Gaps = 13/127 (10%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK +G ++ R ++QE+L E G++ + V ++E G+N S L Sbjct: 1 MDTKK--------IGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGINMPDLSVLVQ 52 Query: 62 ISEVLESPISFFFDVSPT-----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++E + + D + + + +++ N F + + V Sbjct: 53 LAEYYDVEMRELLDGERSQTMNKDMKETLDKVAVYEEWVKQKALKAGNLAFASMFVIGVL 112 Query: 117 QKIIELV 123 II+++ Sbjct: 113 AIIIQML 119 >gi|257084636|ref|ZP_05578997.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|256992666|gb|EEU79968.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] Length = 246 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 2/105 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRL 59 M + IPN +I G RI++ R L ++ ++ + +G++ V ++EKG ++ + + Sbjct: 1 MNEKENIPNS-NIEFGNRIKVVRTDLNLTMDEFAKRIGVSGKSTVNEWEKGRSKPNKNAM 59 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + ISE+ P+ +F+ P + D L+ Sbjct: 60 KKISEISNVPLEWFYFGDPELYLFNLLNSAAKKDGKLRSTILEYL 104 >gi|302562106|ref|ZP_07314448.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] gi|302479724|gb|EFL42817.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces griseoflavus Tu4000] Length = 194 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 3/115 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+PVD+ +G R+ R+ G S +L E GI+ + + E+ AS L + V Sbjct: 9 APDPVDVRLGGRLAELRIEHGWSLGELAERSGISRSTLSRAERAETSPTASLLNRLCAVY 68 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 +S + + + + R + +R +++E Sbjct: 69 GRTMSQLLSEIEAEPAPLVRAAD---QPVWEDRASGFVRRSVSPPHRGLRGELVE 120 >gi|29028568|ref|NP_803258.1| cI-like repressor [Staphylococcus phage 11] gi|57651248|ref|YP_185213.1| prophage L54a, repressor protein, putative [Staphylococcus aureus subsp. aureus COL] gi|66395526|ref|YP_239894.1| ORF018 [Staphylococcus phage 42E] gi|88195767|ref|YP_500576.1| phage repressor protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|18920492|gb|AAL82233.1| cI-like repressor [Staphylococcus phage 11] gi|57285434|gb|AAW37528.1| prophage L54a, repressor protein, putative [Staphylococcus aureus subsp. aureus COL] gi|62636019|gb|AAX91130.1| ORF018 [Staphylococcus phage 42E] gi|87203325|gb|ABD31135.1| phage repressor protein, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|315193399|gb|EFU23796.1| phage repressor protein, putative [Staphylococcus aureus subsp. aureus CGS00] Length = 239 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 3/113 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +IR R L ++Q++LGE L + YE G L I+ +L I Sbjct: 8 KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 F PT + + + LN Q+D+ I E S Sbjct: 68 LF---PTRNNKKNDITSIYNKLTPPRQENVLNYANEQLDEQNKVTSIDEYKES 117 >gi|69248820|ref|ZP_00604806.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257894941|ref|ZP_05674594.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|294623392|ref|ZP_06702249.1| transcriptional regulator [Enterococcus faecium U0317] gi|68194345|gb|EAN08856.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257831320|gb|EEV57927.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|281336179|gb|ADA62728.1| hypothetical membrane protein [Enterococcus faecium] gi|291597192|gb|EFF28386.1| transcriptional regulator [Enterococcus faecium U0317] Length = 153 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R+ G +QE + +T Q + K+E L+ I E + I+ Sbjct: 4 LGSKLRELRVKKGYTQEYVARKFNVTRQTISKWENNKTTPDIETLKKICEFYSTNINSIL 63 Query: 75 DVS 77 + Sbjct: 64 NED 66 >gi|227551856|ref|ZP_03981905.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257895552|ref|ZP_05675205.1| repressor protein [Enterococcus faecium Com12] gi|293568950|ref|ZP_06680263.1| prophage Lp1 protein 8 [Enterococcus faecium E1071] gi|294619352|ref|ZP_06698816.1| prophage Lp1 protein 8 [Enterococcus faecium E1679] gi|227179028|gb|EEI60000.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257832117|gb|EEV58538.1| repressor protein [Enterococcus faecium Com12] gi|291588383|gb|EFF20218.1| prophage Lp1 protein 8 [Enterococcus faecium E1071] gi|291594401|gb|EFF25814.1| prophage Lp1 protein 8 [Enterococcus faecium E1679] Length = 123 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 29/81 (35%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R G +Q +L + + ++ Q + +E G + L ++ + + Sbjct: 5 RIKELRKQHGWTQAELAKKMSVSQQTIGSWEVGRAEPNSEALTKLAHLFNVSTDYLLSNH 64 Query: 78 PTVCSDISSEENNVMDFISTP 98 T + + + + Sbjct: 65 KTPEWATKEDIIELDKLLESN 85 >gi|291531329|emb|CBK96914.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 168 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 31/68 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ R G++QE+L E ++ + V ++E G N L +++ E I Sbjct: 6 IGEFLKYLRKNKGLTQEQLAEHFCVSSRTVSRWENGNNMPDIDILIELADFYEVDIRELI 65 Query: 75 DVSPTVCS 82 D + Sbjct: 66 DGERKSEN 73 >gi|229134433|ref|ZP_04263246.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST196] gi|228649054|gb|EEL05076.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST196] Length = 277 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNENVD 89 >gi|302387287|ref|YP_003823109.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302197915|gb|ADL05486.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 331 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R +G SQE+L +G++ Q V K+E G + R+ +S+V + Sbjct: 1 MILAEKITALRKKVGWSQEELAYQMGVSRQSVSKWESGTSIPDLERILKLSQVFGVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 ++E++ D L+ F++I Sbjct: 61 LLKEEIETAPTAVTQESDR-DEEYKMVSLETANEFMEIK 98 >gi|168206392|ref|ZP_02632397.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|170662087|gb|EDT14770.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 330 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 55/129 (42%), Gaps = 3/129 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV- 76 I+ R +SQ +L E LG+ + YE+ L +S+++ I + Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMNRSIDSLLGLN 71 Query: 77 -SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRSIVSSEKKYR 134 S +D+++ + + FI + N+ F +++ K+R +++ ++ + + Sbjct: 72 HSTENTNDLNNSDLSKKIFILNKLIEKNNQSFKELESSKLRTERMFNELKRTRNRAENDI 131 Query: 135 TIEEECMVE 143 + +E E Sbjct: 132 KLFQELSKE 140 >gi|291532130|emb|CBK97715.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 106 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 33/93 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+R++ R+ GM+QE+L E + +T + YE + I+ V + Sbjct: 2 VKFGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F + + D L + Sbjct: 62 LFGLEDKRSRTLDISGLCEEDIRFLQSAAALLK 94 >gi|190570881|ref|YP_001975239.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190571713|ref|YP_001976071.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019313|ref|ZP_03335120.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|213019394|ref|ZP_03335200.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357153|emb|CAQ54565.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357985|emb|CAQ55448.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994816|gb|EEB55458.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995422|gb|EEB56063.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 325 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I+ R+I G +QE+L + L + Q+ YE+G ++ + RL I+E L Sbjct: 175 GQEIKKWRIIRGYTQEELAKKLNVGPSQIHHYEQGSVKILSERLWEIAEKLSVNAEDL-- 232 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E++ D + L L R +I++ + R ++ V + ++ Y+ Sbjct: 233 ---------IREKDCYEDDEGEKELLSLARELKKINNQESRDELDIWVEFLSQRKQVYKE 283 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 12/136 (8%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N K +P + + +R R+ + + L + GI + + +YE+G + +L+ I Sbjct: 10 NNTKNISPARYKIAQNVRSWRLKQKYALKDLVDKTGIKYHTLLRYEQGACGIPIEKLKVI 69 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 +E L + F + +E+ + + I + R+ I L Sbjct: 70 AEGLSIHVRNLFPRRKALRESGCFDESKIEWM------------YNFIAKTRGRKAIYAL 117 Query: 123 VRSIVSSEKKYRTIEE 138 +SI + E+ Sbjct: 118 TKSIGAEEENNVKAAR 133 >gi|332140175|ref|YP_004425913.1| transcriptional regulator, HTH_3 family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550197|gb|AEA96915.1| transcriptional regulator, HTH_3 family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 187 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 39/97 (40%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P+ + ++ + ++ R G+S +K + G++ + + E+G + + L Sbjct: 1 MTKANAQPSAISKSIAQHLQSVRTGRGLSLDKTAKLTGVSKAMLGQIERGESSPTIATLW 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 I+ L S F T + +++ D T Sbjct: 61 KIATGLACSFSSFLSGDETAPTSQHADDKFANDPNVT 97 >gi|256160334|ref|ZP_05458027.1| hypothetical protein BcetM4_15110 [Brucella ceti M490/95/1] gi|256255538|ref|ZP_05461074.1| hypothetical protein BcetB_14887 [Brucella ceti B1/94] gi|261222746|ref|ZP_05937027.1| conserved hypothetical protein [Brucella ceti B1/94] gi|265998708|ref|ZP_06111265.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|260921330|gb|EEX87983.1| conserved hypothetical protein [Brucella ceti B1/94] gi|262553332|gb|EEZ09166.1| conserved hypothetical protein [Brucella ceti M490/95/1] Length = 470 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 8/139 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K I G RIR R G++Q + E LGI+ + E+ + L Sbjct: 1 MSERK------IFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLK 54 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ V + + S + + + ++ + P +L + V I++ Sbjct: 55 LASVYKLDLDSLQAESGSTVTGLKEVFSDPLLTGELPGDQELVEIGEAAPNAAV--GIMK 112 Query: 122 LVRSIVSSEKKYRTIEEEC 140 L R+ +++ + + Sbjct: 113 LYRAYREQQQRLSDLSKLL 131 >gi|239834303|ref|ZP_04682631.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] gi|239822366|gb|EEQ93935.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 470 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 50/131 (38%), Gaps = 8/131 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K I G RIR R G++Q + E LGI+ + E+ + L Sbjct: 1 MSERK------IFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLK 54 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ V + + S + + + ++ + P +L + V I++ Sbjct: 55 LASVYKLDLDSLQAESGSTITGLKEVFSDPLLTGELPGDQELVEIGEAAPNAAV--GIMK 112 Query: 122 LVRSIVSSEKK 132 L R+ +++ Sbjct: 113 LYRAYREQQQR 123 >gi|262283318|ref|ZP_06061084.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260809|gb|EEY79509.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 120 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 50/118 (42%), Gaps = 2/118 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ ++Q + + L I+ ++E G + + L+ ++ + Sbjct: 4 ERLKALRLEANLTQNDIAKSLNISQPSYAQWENGRRKPSSETLEKFAQFYNVSTDYLLGK 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 S SD + + + + L+ +I + +R+ ++E ++I + K+ + Sbjct: 64 SDYKNSD--EIDLSTFEVLYRKTSKNLSDEEKKILEEDLREFLLEREKAIKAMNKEKK 119 >gi|23502476|ref|NP_698603.1| Cro/CI family transcriptional regulator [Brucella suis 1330] gi|148559184|ref|YP_001259476.1| Cro/CI family transcriptional regulator [Brucella ovis ATCC 25840] gi|161619553|ref|YP_001593440.1| hypothetical protein BCAN_A1650 [Brucella canis ATCC 23365] gi|163843861|ref|YP_001628265.1| hypothetical protein BSUIS_A1669 [Brucella suis ATCC 23445] gi|254702330|ref|ZP_05164158.1| hypothetical protein Bsuib55_15923 [Brucella suis bv. 5 str. 513] gi|254704859|ref|ZP_05166687.1| hypothetical protein Bsuib36_13258 [Brucella suis bv. 3 str. 686] gi|254710644|ref|ZP_05172455.1| hypothetical protein BpinB_10311 [Brucella pinnipedialis B2/94] gi|254714828|ref|ZP_05176639.1| hypothetical protein BcetM6_16109 [Brucella ceti M644/93/1] gi|254717885|ref|ZP_05179696.1| hypothetical protein BcetM_16061 [Brucella ceti M13/05/1] gi|256032137|ref|ZP_05445751.1| hypothetical protein BpinM2_16082 [Brucella pinnipedialis M292/94/1] gi|256061658|ref|ZP_05451797.1| hypothetical protein Bneo5_15035 [Brucella neotomae 5K33] gi|256370026|ref|YP_003107537.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|260565903|ref|ZP_05836373.1| transcriptional regulator [Brucella suis bv. 4 str. 40] gi|261219732|ref|ZP_05934013.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261318215|ref|ZP_05957412.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261322622|ref|ZP_05961819.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261325667|ref|ZP_05964864.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261752894|ref|ZP_05996603.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261755553|ref|ZP_05999262.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265989247|ref|ZP_06101804.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|23348469|gb|AAN30518.1| transcriptional regulator, Cro/CI family [Brucella suis 1330] gi|148370441|gb|ABQ60420.1| transcriptional regulator, Cro/CI family [Brucella ovis ATCC 25840] gi|161336364|gb|ABX62669.1| Hypothetical protein BCAN_A1650 [Brucella canis ATCC 23365] gi|163674584|gb|ABY38695.1| Hypothetical protein BSUIS_A1669 [Brucella suis ATCC 23445] gi|256000189|gb|ACU48588.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|260155421|gb|EEW90501.1| transcriptional regulator [Brucella suis bv. 4 str. 40] gi|260924821|gb|EEX91389.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261295312|gb|EEX98808.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|261297438|gb|EEY00935.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261301647|gb|EEY05144.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261742647|gb|EEY30573.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261745306|gb|EEY33232.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|264661444|gb|EEZ31705.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 470 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 8/139 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K I G RIR R G++Q + E LGI+ + E+ + L Sbjct: 1 MSERK------IFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLK 54 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ V + + S + + + ++ + P +L + V I++ Sbjct: 55 LASVYKLDLDSLQAESGSTVTGLKEVFSDPLLTGELPGDQELVEIGEAAPNAAV--GIMK 112 Query: 122 LVRSIVSSEKKYRTIEEEC 140 L R+ +++ + + Sbjct: 113 LYRAYREQQQRLSDLSKLL 131 >gi|294102131|ref|YP_003553989.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293617111|gb|ADE57265.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 226 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R G +Q++L + +G+ + +EK + +S LE I++ Sbjct: 4 GEEIRRLRKAKGWTQQQLADNVGVAKTTIVDWEKDRYFPTGENVHKLSRSLEVSIAYLMG 63 Query: 76 VSPTVCSDISSEENNVMDFI 95 + D I Sbjct: 64 ETDNPIQIGKDNIFKDYDLI 83 >gi|282909328|ref|ZP_06317144.1| repressor [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958772|ref|ZP_06376218.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus A017934/97] gi|282326896|gb|EFB57193.1| repressor [Staphylococcus aureus subsp. aureus WW2703/97] gi|283789812|gb|EFC28634.1| putative prophage L54a, repressor protein [Staphylococcus aureus subsp. aureus A017934/97] Length = 239 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 3/113 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +IR R L ++Q++LGE L + YE G L I+ +L I Sbjct: 8 KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 F PT + + + LN Q+D+ I E S Sbjct: 68 LF---PTRNNKKNDITSIYNKLTPPRQENVLNYANEQLDEQNKVTSIDEYKES 117 >gi|219853616|ref|YP_002470738.1| hypothetical protein CKR_0273 [Clostridium kluyveri NBRC 12016] gi|219567340|dbj|BAH05324.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 186 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 58/125 (46%), Gaps = 11/125 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +N+G++++ R G++ + + E G++ + ++E+G+ + L I+ VL I Sbjct: 6 IFMNIGEKVKELRNKKGLTLKTMSEKTGLSTGFLSQFERGITTIAVEHLSTIATVLNVRI 65 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII--ELVRSIVS 128 ++FFD E+ ++ P Q+N+ + K++ EL+ + Sbjct: 66 NYFFDDE---------EKELIIRSYDQPFVRQINKAIYKSLSRYPEDKMLSPELIELLPK 116 Query: 129 SEKKY 133 E +Y Sbjct: 117 DEHQY 121 >gi|146300090|ref|YP_001194681.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154508|gb|ABQ05362.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 135 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 8/143 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + PN ++G++I R + M QE L + LG Q + + + +L Sbjct: 1 MSTLTKPN----HIGRKISRIRELRDMKQEALAQALGTNQQAI-SILENSETIDEDKLIA 55 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I++ L + S + + N+ + ++ + N ++ + +K Sbjct: 56 IAKALGVTAEAIKNFSEEGVINYFNTFNDSDNNFNSYNTCTFNPLDKLVESFEENKK--- 112 Query: 122 LVRSIVSSEKKYRTIEEECMVEQ 144 L ++ SEK E+ + E+ Sbjct: 113 LYERLLQSEKDKIEYLEKLLKEK 135 >gi|331082825|ref|ZP_08331947.1| hypothetical protein HMPREF0992_00871 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400154|gb|EGG79803.1| hypothetical protein HMPREF0992_00871 [Lachnospiraceae bacterium 6_1_63FAA] Length = 91 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 33/83 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I R G+SQ+ ++ Q V +E G + + IS+ + + Sbjct: 1 MNIGEQINNLRKKHGLSQDDFANLFNVSRQTVSNWENGKSYPDLEMIIKISDYFKISVDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 I +E+ D + Sbjct: 61 LLRNDVQSEEKIDNEKKVKRDIL 83 >gi|160873890|ref|YP_001553206.1| putative phage repressor [Shewanella baltica OS195] gi|160859412|gb|ABX47946.1| putative phage repressor [Shewanella baltica OS195] Length = 240 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 42/87 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR +R LG++Q+ LG +G++ V ++EK + L +++ L+ +S+ Sbjct: 13 LGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFALAKSLKCDLSWLL 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 + + ++E D L Sbjct: 73 NGQVAAKPESNAEWAGGFDLWDNDSPL 99 >gi|262273101|ref|ZP_06050918.1| hypothetical transcriptional regulator [Grimontia hollisae CIP 101886] gi|262222857|gb|EEY74165.1| hypothetical transcriptional regulator [Grimontia hollisae CIP 101886] Length = 121 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 10/118 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +V +RIR R ++Q ++ + L + Q E G S L I++V P+ Sbjct: 4 VKAHVAQRIREAREYRDITQVEMAQHLDVARQTYLDIESGKTEPKVSSLATIADVTGRPL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 ++F T + F D L F Q+ D R+ +++ + Sbjct: 64 NWFLFGESTRSD---------IAFTHRDDLNTLLALFSQLPDSA-RKLVMDQALLLAQ 111 >gi|237735272|ref|ZP_04565753.1| transcriptional regulator [Mollicutes bacterium D7] gi|229381017|gb|EEO31108.1| transcriptional regulator [Coprobacillus sp. D7] Length = 221 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I L R G++QE+L + L ++ Q V K+E G + +S + I Sbjct: 1 MIGDKIILYRKRKGLTQEELADLLEVSRQTVTKWESGSVLPNLDYIMGLSVIFGITIDNL 60 Query: 74 FDVSPTVCSDISSEENNVMDF 94 + +I S+ +N Sbjct: 61 VKDNDCAKQEIESKISNYNWI 81 >gi|170752102|ref|YP_001758362.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658624|gb|ACB27679.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 124 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 42/75 (56%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 VD+ +G RI R+ ++Q + +G+T Q+QKYEKG NR+ L I+++ Sbjct: 6 ATDVDVRIGGRISAARIRARLTQRTVAAEIGVTAAQLQKYEKGTNRISGVALSIIAKLTG 65 Query: 68 SPISFFFDVSPTVCS 82 +PI+ FFDV T Sbjct: 66 APIASFFDVPETPAP 80 >gi|167755003|ref|ZP_02427130.1| hypothetical protein CLORAM_00507 [Clostridium ramosum DSM 1402] gi|167705053|gb|EDS19632.1| hypothetical protein CLORAM_00507 [Clostridium ramosum DSM 1402] Length = 221 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I L R G++QE+L + L ++ Q V K+E G + +S + I Sbjct: 1 MIGDKIILYRKRKGLTQEELADLLEVSRQTVTKWESGSVLPNLDYIMGLSVIFGITIDNL 60 Query: 74 FDVSPTVCSDISSEENNVMDF 94 + +I S+ +N Sbjct: 61 VKDNDCAKQEIESKISNYNWI 81 >gi|323693263|ref|ZP_08107481.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] gi|323502746|gb|EGB18590.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] Length = 151 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI GK+IR R GM+QE+L L +T Q + +E+ VN + L+ I + + Sbjct: 7 DITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNEPDLNTLKKICFLFGVHMD 66 Query: 72 FF 73 F Sbjct: 67 DF 68 >gi|317500621|ref|ZP_07958840.1| HTH domain-containing protein [Lachnospiraceae bacterium 8_1_57FAA] gi|316897939|gb|EFV19991.1| HTH domain-containing protein [Lachnospiraceae bacterium 8_1_57FAA] Length = 151 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI GK+IR R GM+QE+L L +T Q + +E+ VN + L+ I + + Sbjct: 7 DITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNEPDLNTLKKICFLFGVHMD 66 Query: 72 FF 73 F Sbjct: 67 DF 68 >gi|284008034|emb|CBA74134.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 232 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 33/83 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R M+QE LG+ +G++ + ++E G L +++ L I + D Sbjct: 4 ERIRQARNHNKMTQESLGKRIGVSKATISQWESGTTEPNGKNLVSLAKALGVTIEWLLDG 63 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 + N + P Sbjct: 64 DEKNAEVNAQLANAKIIGNFAPW 86 >gi|323487601|ref|ZP_08092891.1| hypothetical protein HMPREF9474_04642 [Clostridium symbiosum WAL-14163] gi|157816226|gb|ABV82119.1| HTH domain protein [Streptococcus parasanguinis] gi|198387264|gb|ACH87089.1| helix-turn-helix XRE-family-like protein [Escherichia coli] gi|323399100|gb|EGA91508.1| hypothetical protein HMPREF9474_04642 [Clostridium symbiosum WAL-14163] Length = 151 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI GK+IR R GM+QE+L L +T Q + +E+ VN + L+ I + + Sbjct: 7 DITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVNEPDLNTLKKICFLFGVHMD 66 Query: 72 FF 73 F Sbjct: 67 DF 68 >gi|229119313|ref|ZP_04248616.1| hypothetical phagelike protein [Bacillus cereus Rock1-3] gi|228664179|gb|EEL19717.1| hypothetical phagelike protein [Bacillus cereus Rock1-3] Length = 228 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V VG++I+ R + M+Q++LG +G + YE G N L I++ L Sbjct: 1 MKQDVSKYVGQQIKNFRKLKKMTQKELGLRIGKKHNTISSYENGTNEPEQDVLFAIAQAL 60 Query: 67 ESPISFFF 74 + I+ F Sbjct: 61 DISINDLF 68 >gi|268593156|ref|ZP_06127377.1| transcriptional regulator, XRE family [Providencia rettgeri DSM 1131] gi|291311202|gb|EFE51655.1| transcriptional regulator, XRE family [Providencia rettgeri DSM 1131] Length = 99 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 2/90 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N K P V VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L Sbjct: 1 MFMNTKYP--VACAVGQKIKALRRAQGFTVFQLAKEIDISEQQLFRYERGVNRIDIDCLV 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN 90 + +VL+ + FF + + N Sbjct: 59 RVLKVLDVNMGEFFSEVLQEDTQVDESTGN 88 >gi|300857657|ref|YP_003782640.1| HTH_3 family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|300685111|gb|ADK28033.1| HTH_3-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] gi|302205396|gb|ADL09738.1| Putative transcription regulator [Corynebacterium pseudotuberculosis C231] gi|302329950|gb|ADL20144.1| Putative transcription regulator [Corynebacterium pseudotuberculosis 1002] gi|308275634|gb|ADO25533.1| Putative transcription regulator [Corynebacterium pseudotuberculosis I19] Length = 475 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 9/133 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L L ++ V + E V + L I+EV +FF Sbjct: 5 YVGSRLRQLRKERGLSQANLAGTLELSASYVNQIEHDVRPLTLPVLHRITEVFGVDATFF 64 Query: 74 FDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 D+ ++ + I + L + I + ++E+ R + Sbjct: 65 SKDDASRLLAEVHDVMLDKELCPEDIDLQELSDLVDHHPDIA-----RAVVEMHRRYRNV 119 Query: 130 EKKYRTIEEECMV 142 K + +V Sbjct: 120 RDKLSAATDARLV 132 >gi|229061582|ref|ZP_04198926.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH603] gi|228717816|gb|EEL69466.1| Transcriptional regulator, Cro/CI [Bacillus cereus AH603] Length = 118 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 12/123 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R ++QEK+GE +G++ Q + KYEKG+ ++ +++ PI + F Sbjct: 4 IGERIFDLRKERKLTQEKIGENIGVSKQTISKYEKGIKIPSRENIEKLADFFNVPIDYLF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR----SIVSSE 130 S T ++ + + + + + + L+ ++ E Sbjct: 64 GKSDTSIKSSNNIKEIFES--------DELHWDGRKLSPEEIESVKALLEVAIQRMLKQE 115 Query: 131 KKY 133 KK Sbjct: 116 KKD 118 >gi|167757513|ref|ZP_02429640.1| hypothetical protein CLORAM_03063 [Clostridium ramosum DSM 1402] gi|237735075|ref|ZP_04565556.1| predicted protein [Mollicutes bacterium D7] gi|167702510|gb|EDS17089.1| hypothetical protein CLORAM_03063 [Clostridium ramosum DSM 1402] gi|229381851|gb|EEO31942.1| predicted protein [Coprobacillus sp. D7] Length = 153 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+++ R G SQ+++ + L ++ Q + +E + ++++ + Sbjct: 1 MLGEKLMRLRKKQGYSQQEVADKLSVSRQTISNWECDQALPAVDKAMELAQLYNISLDDL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDG-LQLNRYFIQID 111 + + S+ +++ +++ ++ L+ R +D Sbjct: 61 MENEIEIVSNNKTKDLHLLQYLIGKTCTLECTRDAYLLD 99 >gi|297582579|ref|YP_003698359.1| XRE family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141036|gb|ADH97793.1| transcriptional regulator, XRE family [Bacillus selenitireducens MLS10] Length = 210 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I RR L +SQ + E +G++ Q V K+E G + + L ++EVL + Sbjct: 1 MALGTTISQRRKELNLSQAFVAEEMGVSRQAVSKWETGQSVPSTAHLIRLAEVLGCDVQD 60 Query: 73 FFDVSPTVCSDISSEEN 89 + +EE+ Sbjct: 61 LAEPDQEAQPAQPAEES 77 >gi|66395390|ref|YP_239683.1| ORF020 [Staphylococcus phage 53] gi|62635740|gb|AAX90851.1| ORF020 [Staphylococcus phage 53] Length = 239 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 3/113 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +IR R L ++Q++LGE L + YE G L I+ +L I Sbjct: 8 KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 F PT + + + LN Q+D+ I E S Sbjct: 68 LF---PTRNNKKNDITSIYSKLTPPRQKNVLNYANEQLDEQNKVTSIDEYKES 117 >gi|323693266|ref|ZP_08107484.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] gi|323502749|gb|EGB18593.1| HTH domain-containing protein [Clostridium symbiosum WAL-14673] Length = 151 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI GK+IR R GM+QE+L L +T Q + +E+ V+ + L+ I + + Sbjct: 7 DITTGKQIRHLRTQSGMTQEELAGELNVTRQALSNWERDVSEPDLNTLKKICYLFGVHMD 66 Query: 72 FF 73 F Sbjct: 67 DF 68 >gi|294852923|ref|ZP_06793596.1| hypothetical protein BAZG_01859 [Brucella sp. NVSL 07-0026] gi|294821512|gb|EFG38511.1| hypothetical protein BAZG_01859 [Brucella sp. NVSL 07-0026] Length = 470 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 8/139 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K I G RIR R G++Q + E LGI+ + E+ + L Sbjct: 1 MSERK------IFAGPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLK 54 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ V + + S + + + ++ + P +L + V I++ Sbjct: 55 LASVYKLDLDSLQAESGSTVTGLKEVFSDPLLTGELPSDQELVEIGEAAPNAAV--GIMK 112 Query: 122 LVRSIVSSEKKYRTIEEEC 140 L R+ +++ + + Sbjct: 113 LYRAYREQQQRLSDLSKLL 131 >gi|260550053|ref|ZP_05824267.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406808|gb|EEX00287.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 197 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 4/92 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++I + RIR R+ G + + L ++ + E+G A L+ ++ LE Sbjct: 2 DDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEV 61 Query: 69 PISFFFDVSPTVCSDIS----SEENNVMDFIS 96 P++ F T S +E+ D + Sbjct: 62 PLTKIFTNETTSPSPQPFICRNEQAEWQDPET 93 >gi|58039039|ref|YP_191003.1| aldehyde dehydrogenase-like protein [Gluconobacter oxydans 621H] gi|58001453|gb|AAW60347.1| Aldehyde dehydrogenase-like protein [Gluconobacter oxydans 621H] Length = 180 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R+R R +SQ +L + G+T + E G L+ I + + + Sbjct: 1 MDLGARLRFVRTARNLSQRELAKRTGVTNSTISLIESGDMNPSVGTLKRILDGIPVTLGE 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 FF ++P I + +M F Sbjct: 61 FFSIAPEGGEKIFYRADELMTF 82 >gi|255011059|ref|ZP_05283185.1| putative DNA-binding protein [Bacteroides fragilis 3_1_12] gi|313148864|ref|ZP_07811057.1| transcriptional regulator [Bacteroides fragilis 3_1_12] gi|313137631|gb|EFR54991.1| transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 151 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 2/141 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++ V+++ G IR R+ + Q+ L + +T V KYEK + + L Sbjct: 1 METEEEIQNVNVHHGHNIRRTRIEKNIKQDALAALVNMTQPNVSKYEK-MRVIEDEMLNR 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + L P+ + + S + NNV D + G + KI Sbjct: 60 FARALNVPVEYLKTLEEDAPSVVFENITNNVHDNKDSSMGSTGYNNDSITNTFNPIDKIT 119 Query: 121 ELVRSIVSSEKKYRTIEEECM 141 EL ++ + + E+ + Sbjct: 120 ELYERLLKEKDEKYAALEKRI 140 >gi|253750928|ref|YP_003024069.1| DNA-binding protein [Streptococcus suis SC84] gi|253752827|ref|YP_003025967.1| DNA-binding protein [Streptococcus suis P1/7] gi|251815217|emb|CAZ50781.1| putative DNA-binding protein [Streptococcus suis SC84] gi|251819072|emb|CAR44086.1| putative DNA-binding protein [Streptococcus suis P1/7] gi|319757177|gb|ADV69119.1| putative DNA-binding protein [Streptococcus suis JS14] Length = 119 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 2/95 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + ++IR+ R +SQ++L E L I+ Q V K+E G +L ++E+ + + Sbjct: 2 KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLDY 61 Query: 73 FFDVSPTVCSDISSEENNV--MDFISTPDGLQLNR 105 + + + +F++ L R Sbjct: 62 LVLGKEPEKEIVVEQRGKMNGWEFLNEESKRPLTR 96 >gi|282599891|ref|ZP_05972255.2| transcriptional regulator [Providencia rustigianii DSM 4541] gi|282567526|gb|EFB73061.1| transcriptional regulator [Providencia rustigianii DSM 4541] Length = 96 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N+K P + VG++++ R G + +L I+ QQ+ +YE+GVNR+ L Sbjct: 1 MFMNRKFP--IAYAVGQKVKSLRKSQGYTVFQLARECNISEQQLFRYERGVNRIDIDCLA 58 Query: 61 HISEVLESPISFFFDV 76 +S++L IS F Sbjct: 59 RVSKILNVNISDIFSD 74 >gi|240144766|ref|ZP_04743367.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257203287|gb|EEV01572.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 94 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R+ ++Q++L + LG+ + YE L + + + Sbjct: 1 MNLGEKLKQLRLEKNLTQKQLADRLGVAISAISSYESDTRCPTFDTLIKYARIFHVSTDY 60 Query: 73 FFDVSPTVCSDISSEEN 89 + P D+S + Sbjct: 61 LLGLEPIHTLDVSGLSD 77 >gi|148259597|ref|YP_001233724.1| hypothetical protein Acry_0581 [Acidiphilium cryptum JF-5] gi|326402804|ref|YP_004282885.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146401278|gb|ABQ29805.1| protein of unknown function DUF955 [Acidiphilium cryptum JF-5] gi|325049665|dbj|BAJ80003.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 484 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 1/117 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R G+ Q + LG++ + + E V + ++L P++ Sbjct: 17 GARIRQIREQRGLQQRDIARRLGLSPSYMNQIENDRRPVPPRLAAPLCDLLGIPLAELSG 76 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + E R ++ D ++ ++ I L + + + + Sbjct: 77 DDEVRRAGDLLEAALDPALGPGRLTFTEARAAVR-DTPELARRFIALYAAYRAQQAR 132 >gi|197286053|ref|YP_002151925.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227356567|ref|ZP_03840954.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194683540|emb|CAR44391.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227163323|gb|EEI48250.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 117 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 35/70 (50%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VG RI++ R GM+ +LG LG++ Q ++E G + + +S + Sbjct: 18 MNKKISKIVGARIKMLRQQHGMTGSELGALLGVSQQHQSRFENGECNIHVDVIYLLSYIF 77 Query: 67 ESPISFFFDV 76 + +++FF Sbjct: 78 KVKLNYFFQD 87 >gi|300783560|ref|YP_003763851.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793074|gb|ADJ43449.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 474 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 38/123 (30%), Gaps = 9/123 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R MSQ L L I+ + + E + L I++ FF + Sbjct: 7 GARLRHLRESRSMSQADLARVLEISPSYLNQIEHNSRPLTVPVLLRITQAFGVDTEFFAN 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + E +LN + + +++V + YR Sbjct: 67 NDTSRLVADVKEALLDEALGIDVTTGELNELATNLP---------AIAQALVKLHRSYRN 117 Query: 136 IEE 138 E Sbjct: 118 AVE 120 >gi|257438062|ref|ZP_05613817.1| putative helix-turn-helix protein [Faecalibacterium prausnitzii A2-165] gi|257199393|gb|EEU97677.1| putative helix-turn-helix protein [Faecalibacterium prausnitzii A2-165] Length = 208 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G++QE+L E L ++ + K+E G L+ IS I Sbjct: 8 EKLQELRKSRGLTQEELAEALFVSRTAISKWESGRGYPSIDSLKEISRYFSVSIDELLSG 67 Query: 77 S 77 Sbjct: 68 D 68 >gi|169631196|ref|YP_001704845.1| transcriptional regulatory protein [Mycobacterium abscessus ATCC 19977] gi|169243163|emb|CAM64191.1| Probable transcriptional regulatory protein [Mycobacterium abscessus] Length = 476 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGGRLRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + E D D ++ + + ++ L R + + Sbjct: 65 SSQDDSRLIAELREVVQDKDLDIDVDPAEIADVVA--GHPALARAMVNLHRRYRITTTQL 122 Query: 134 RTIEEE 139 E+ Sbjct: 123 AAATED 128 >gi|160932990|ref|ZP_02080379.1| hypothetical protein CLOLEP_01832 [Clostridium leptum DSM 753] gi|156868064|gb|EDO61436.1| hypothetical protein CLOLEP_01832 [Clostridium leptum DSM 753] Length = 222 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 24/70 (34%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G+SQ E +GI+ V +E G ++ I++ + + Sbjct: 20 RLKELRENAGLSQYGFAEKIGISQSTVGNWEAGSREPNFKTMERIADFFGVSVDYLLGRE 79 Query: 78 PTVCSDISSE 87 Sbjct: 80 TVAGGPPEPS 89 >gi|295694886|ref|YP_003588124.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295410488|gb|ADG04980.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 195 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 4/113 (3%) Query: 7 IPNPVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + PVD +G+ +R R G + +K+ G++ + + E+G + L I+ Sbjct: 1 MLEPVDFSRRIGQILRSLRRDRGWTLDKMAAVTGVSKPMLGQIERGESNPTVVTLWKIAT 60 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 L P S F I + + DG + R + D + + Sbjct: 61 GLGVPFSTFLRDPDDPRVAIVPQSRQPG--VKDDDGGYVVRSLVTAADPQPAE 111 >gi|223985560|ref|ZP_03635614.1| hypothetical protein HOLDEFILI_02920 [Holdemania filiformis DSM 12042] gi|223962467|gb|EEF66925.1| hypothetical protein HOLDEFILI_02920 [Holdemania filiformis DSM 12042] Length = 174 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 45/117 (38%), Gaps = 9/117 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +RL R G+SQE LG+ L ++ + +YE + L ++E+ ++ Sbjct: 19 LGENLRLLREERGISQEALGQDLSLSDGAISRYENNAAEPDINTLFGMAEIFGVDFNYLL 78 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 D D + ++L F Q R I L + + ++ Sbjct: 79 DYHG--------HVRKSQDIVLQNKDVELLTCFHQCSSGHQR-VIRMLAKELARQDR 126 >gi|183981401|ref|YP_001849692.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183174727|gb|ACC39837.1| transcriptional regulatory protein [Mycobacterium marinum M] Length = 473 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 6/122 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L LG++ V + E + S L ++E + P +F Sbjct: 7 GARLRRLREDHGLTQVALARALGLSTSYVNQLENDQRPITVSVLLALAERFDLPTHYFAP 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S E + +L V Q ++ L R + + + Sbjct: 67 DSDARLVSDLREVFAEG-PATPAQIEELVARM-----PAVGQTLVNLHRRLYDATAELEA 120 Query: 136 IE 137 + Sbjct: 121 LH 122 >gi|118617981|ref|YP_906313.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118570091|gb|ABL04842.1| transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 483 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 6/122 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L LG++ V + E + S L ++E + P +F Sbjct: 17 GARLRRLREDHGLTQVALARALGLSTSYVNQLENDQRPITVSVLLALAERFDLPTHYFAP 76 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S E + +L V Q ++ L R + + + Sbjct: 77 DSDARLVSDLREVFAEG-PATPAQIEELVARM-----PAVGQTLVNLHRRLYDATAELEA 130 Query: 136 IE 137 + Sbjct: 131 LH 132 >gi|66395312|ref|YP_239602.1| ORF019 [Staphylococcus phage 69] gi|66396425|ref|YP_240780.1| ORF019 [Staphylococcus phage 92] gi|151221206|ref|YP_001332028.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|257433183|ref|ZP_05609541.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|296277282|ref|ZP_06859789.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus MR1] gi|62635663|gb|AAX90774.1| ORF019 [Staphylococcus phage 69] gi|62636839|gb|AAX91950.1| ORF019 [Staphylococcus phage 92] gi|104641720|gb|ABF73098.1| cI-like repressor [Staphylococcus aureus phage phiNM2] gi|150374006|dbj|BAF67266.1| phage cI-like repressor [Staphylococcus aureus subsp. aureus str. Newman] gi|257281276|gb|EEV11413.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] Length = 239 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 3/113 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +IR R L ++Q++LGE L + YE G L I+ +L I Sbjct: 8 KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 F PT + + + LN Q+D+ I E S Sbjct: 68 LF---PTRNNKKNDITSIYSKLTPPRQKNVLNYANEQLDEQNKVTSIDEYKES 117 >gi|294502078|ref|YP_003566143.1| Transcriptional regulator containing Lambda repressor-like, DNA-binding domain [Salinibacter ruber M8] gi|294342062|emb|CBH22727.1| Transcriptional regulator containing Lambda repressor-like, DNA-binding domain [Salinibacter ruber M8] Length = 392 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 15/115 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R MSQ+++ LG+T + +YE G ++GA L+ ++ + P+S Sbjct: 8 ALGQRLRQARKQAHMSQKEVAGHLGVTASALSQYESGKRKIGALALERLARLYSVPLSSL 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 F PD + + + R+ + +LVR + Sbjct: 68 FSEEGGEE---------------RPDWERALLGETENMSPEGRKGVAKLVRRVRQ 107 >gi|160945921|ref|ZP_02093147.1| hypothetical protein FAEPRAM212_03454 [Faecalibacterium prausnitzii M21/2] gi|158443652|gb|EDP20657.1| hypothetical protein FAEPRAM212_03454 [Faecalibacterium prausnitzii M21/2] Length = 169 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R +G+SQEKL E +G++ Q + K+E G+ ++ +SE + + Sbjct: 12 EKIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLASPELEKIVSLSECFKVSTDYLLKD 71 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 + T + +S L Sbjct: 72 NLTEPTPPQESALKGKQRMSWRAWL 96 >gi|158522276|ref|YP_001530146.1| XRE family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158511102|gb|ABW68069.1| transcriptional regulator, XRE family [Desulfococcus oleovorans Hxd3] Length = 433 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 1/82 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R GMSQ L +G+T + + E L +SE+L + +FF Sbjct: 253 LGLRIKELRTKKGMSQVALARGIGVTPSTISQVENNQIFPSVPALIKMSEILSVDVGYFF 312 Query: 75 -DVSPTVCSDISSEENNVMDFI 95 + + + SE + + Sbjct: 313 QTGAGSAPRVVFSEFEAMPSPV 334 >gi|260655665|ref|ZP_05861138.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] gi|260629582|gb|EEX47776.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] Length = 247 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 26/87 (29%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R G+S L E + I+ V E G L I++ + Sbjct: 9 GANIRELRKKRGISARVLAEAVNISTPFVYDIENGRTLPSVPVLNAIAQYFGVTTDYLMG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 + + ++ D + Sbjct: 69 LDEPGAPSSADKQTAASDNEAASYPND 95 >gi|146299044|ref|YP_001193635.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146153462|gb|ABQ04316.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 127 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 12/131 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R + M QE L + LG++ Q V E + +L+ +++VL + Sbjct: 9 HIGRKISRIRELKDMKQEALAQALGMSQQSVSTME-NSETIDEEKLKEVAKVLGMTVEAI 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + S + + + F + + K+IEL +V +EK+ Sbjct: 68 KNFSEEAVINYFNNIYDQGVFNTGNYC-----------NFNPLDKVIELYERLVQAEKEK 116 Query: 134 RTIEEECMVEQ 144 E+ + E+ Sbjct: 117 NEYLEKLLKEK 127 >gi|291617399|ref|YP_003520141.1| YdcN [Pantoea ananatis LMG 20103] gi|291152429|gb|ADD77013.1| YdcN [Pantoea ananatis LMG 20103] Length = 181 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 11/131 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++ R G S E G++ + + E+G + + L I+ P SFF Sbjct: 7 YLGDGLKQLRQANGWSLSLTAEKTGVSKAMLGQIERGESSPTVATLWKIATGFNVPFSFF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 +++ TP + R + L + + + Sbjct: 67 VHSGVHPAGEVTCYRQQNAQMAVTP-----------LLPYDARLRFDLLAVELAAGAQSD 115 Query: 134 RTIEEECMVEQ 144 T E+ ++EQ Sbjct: 116 STAHEKGVIEQ 126 >gi|251795933|ref|YP_003010664.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543559|gb|ACT00578.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 231 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 36/85 (42%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + I G+RI+ R GMSQE L G+ + E+G V ++ I+ L+ Sbjct: 2 DIRIEFGQRIKELRARSGMSQEHLAYRAGLDRSYISGVERGERNVSIINIEKIASALQIG 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDF 94 +++ F ++ ++ F Sbjct: 62 VAYLFSGERFSPKQAYQPKDFIVPF 86 >gi|296268292|ref|YP_003650924.1| helix-turn-helix domain-containing protein [Thermobispora bispora DSM 43833] gi|296091079|gb|ADG87031.1| helix-turn-helix domain protein [Thermobispora bispora DSM 43833] Length = 370 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + +G+R+R R+ G+SQ +L + + + + K E G R+ A L Sbjct: 1 MCDYRTMSSLDWQEIGERVRQARLAKGLSQLQLAQKVDLDRTMITKIEAGSRRLDALELA 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 +++ L+ PI F +P V S + + S P N I D+++ Sbjct: 61 RLAQALDVPIGHFLHPAPEVLSHRTPLAEDTATDASQPYYRLDNALAAWIRDIRL 115 >gi|329115049|ref|ZP_08243804.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum DM001] gi|326695492|gb|EGE47178.1| Putative HTH-type transcriptional regulator [Acetobacter pomorum DM001] Length = 531 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 4/124 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R ++Q L E L I+ + + E+ + LQ + E ++F + Sbjct: 71 GPRLRQLRQRETLTQANLAEILDISPSYLNQLERNHRPLPHHLLQKLCERFGLSPAWFSN 130 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR-YFIQIDDVKVRQKIIELVRSIV-SSEKKY 133 E + D + L L + + + + + L R+ E++ Sbjct: 131 TKEAHTVQAMRET--MADPVFKNASLPLAKMADAVLTNPDLCAAFLTLYRAYKFEQERED 188 Query: 134 RTIE 137 + Sbjct: 189 NALL 192 >gi|295397657|ref|ZP_06807732.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563] gi|294974120|gb|EFG49872.1| conserved hypothetical protein [Aerococcus viridans ATCC 11563] Length = 222 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 1/126 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G +I+ RM G++ E+ G+ + + +E G N L ++++ + Sbjct: 4 IRLGNKIKSIRMEKGLTLEEFGKKFNTSKVTIYNWEIGRNAPNKKNLAILADLAGISVDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + ++ + DF D R Q + K + +L+ + Sbjct: 64 LLYGTREELISKGV-KDGLQDFFDRSDNQGYKREDYQANKEKYITLLSDLIEEFTQLSES 122 Query: 133 YRTIEE 138 EE Sbjct: 123 VLPYEE 128 >gi|257056813|ref|YP_003134645.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256586685|gb|ACU97818.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 475 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 9/123 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R MSQ +L L I+ + + E + L I+E FF + Sbjct: 7 GARLRHLRESRSMSQAELARLLEISPSYLNQIEHNTRPLTVPVLLRITEAFGVDAEFFAN 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + E + ++N + + +++V + YR Sbjct: 67 NDTSRLVADVREALLDESVNADVSPGEINDLAKNLPS---------VAQALVKLHRNYRN 117 Query: 136 IEE 138 E Sbjct: 118 AIE 120 >gi|315640505|ref|ZP_07895613.1| XRE family transcriptional regulator [Enterococcus italicus DSM 15952] gi|315483709|gb|EFU74197.1| XRE family transcriptional regulator [Enterococcus italicus DSM 15952] Length = 139 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 37/83 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I+L R M+Q + E L ++ Q V +E+G + +S++ + + Sbjct: 1 MDIGEKIQLLRKEKQMTQNMVAEVLHVSTQAVSNWERGKGYPDIQNILQLSDLFDVSLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 + +++ N + Sbjct: 61 LIKEDVDFKDALLTKKVNGWMDL 83 >gi|134300624|ref|YP_001114120.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053324|gb|ABO51295.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 139 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 51/118 (43%), Gaps = 5/118 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R +++E + LG+T + V YE G + +L +++ + + + Sbjct: 27 IGERLRQLRKEKNINREDVANLLGVTVRSVTNYESGQRNLDPDQLIALADYYDVSMDYLT 86 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 S ++ ++ ++ L R ++ +++I ++++ V + Sbjct: 87 GRSDNPKPPQTTTIDDEWPEVAN----VLRRNGKKLTTED-KKRIATIIKAAVEDIDE 139 >gi|228922337|ref|ZP_04085644.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837392|gb|EEM82726.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 277 Score = 55.2 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNENVD 89 >gi|313897568|ref|ZP_07831110.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957520|gb|EFR39146.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 302 Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 28/72 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++++ R GMSQE+L L ++ Q V K+E ++ I + + + Sbjct: 1 MKFGEKLQKLRKEKGMSQEELAARLHVSRQAVSKWENDQGYPETEKMLMIGNIFSVTMDY 60 Query: 73 FFDVSPTVCSDI 84 Sbjct: 61 LLKDEGGDQPQE 72 >gi|312278268|gb|ADQ62925.1| Putative transcriptional regulator [Streptococcus thermophilus ND03] Length = 229 Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 46/120 (38%), Gaps = 25/120 (20%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R GMSQ + + LGI+ +E G + L ++E+ ++F Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 ++ ++++ + RQ+ + ++++ ++ + Sbjct: 64 E------------------------HEIVEVYLELTEEN-RQEALRFTKALLEEQEAEKK 98 >gi|296332860|ref|ZP_06875320.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673206|ref|YP_003864878.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296150140|gb|EFG91029.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411450|gb|ADM36569.1| helix-turn-helix domain-containing protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 261 Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E + T Q + K+E G +L I + E I + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKVNTTRQAISKWENGQGFPETEKLLMIGNIFEVSIDYLLK 63 Query: 76 VSPTVCSDISS 86 S +D Sbjct: 64 DSVEPRTDNKE 74 >gi|296270730|ref|YP_003653362.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093517|gb|ADG89469.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 192 Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Query: 7 IPNP--VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +P+P ++ + +R R GM+ ++L ++ + + E+G + L I+E Sbjct: 1 MPDPETINAAIAANVRSLRGQRGMTLDELAARSKVSRGMLIQIEQGRTNPSINTLNRIAE 60 Query: 65 VLESPISFFFDVSP 78 L I +V+ Sbjct: 61 ALGVSIGRLVEVAD 74 >gi|224825809|ref|ZP_03698913.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224602033|gb|EEG08212.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 119 Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 3/120 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R +Q+ L + +G+ V ++E G + +++ L + Sbjct: 1 MIIGFRIKEARKARRRTQKWLADEVGVKQSSVSQWEMGETEPTTANCSSVAQALRISFEW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS--TPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + +S +V + D +L F Q+ K RQ +++ +R +++ Sbjct: 61 LTTGRGEMDVTYASAVVHVAEPGQDLDDDKKELLALFDQLPK-KKRQILLQFMRDWAATK 119 >gi|167751674|ref|ZP_02423801.1| hypothetical protein EUBSIR_02680 [Eubacterium siraeum DSM 15702] gi|167655482|gb|EDR99611.1| hypothetical protein EUBSIR_02680 [Eubacterium siraeum DSM 15702] Length = 271 Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G I +R LG++Q+ L E L ++FQ + K+E G + L I+ +L++ I Sbjct: 1 MNIGNVISEKRKALGLTQQALAEKLHVSFQAISKWENGTSCPDIELLPQIAAILKTTIDS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 +D N + L ++I K+I++ Sbjct: 61 LLGYPSQSVTDYDKRYGNEEYYWGLKPNN-LCYEIMRIKPPVKPYKVIDI 109 >gi|163847710|ref|YP_001635754.1| cupin 2 domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222525574|ref|YP_002570045.1| XRE family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668999|gb|ABY35365.1| Cupin 2 conserved barrel domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449453|gb|ACM53719.1| transcriptional regulator, XRE family [Chloroflexus sp. Y-400-fl] Length = 211 Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 4/81 (4%) Query: 1 MVGNKKIPNPV----DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 MV P+ V +++VG RIR R +S L E G+ + E G Sbjct: 1 MVDPVSSPHLVGEIGNVDVGTRIRTLREQRRLSIRALAEASGLAVNTLSLIENGRTSPSV 60 Query: 57 SRLQHISEVLESPISFFFDVS 77 S LQ ++ L+ P+S FF Sbjct: 61 STLQRLAVALQVPVSTFFTPD 81 >gi|150376587|ref|YP_001313183.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031134|gb|ABR63250.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 193 Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 37/110 (33%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R+ + +L G++ + K E+G L I+ V + F Sbjct: 14 AIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFGVGLDHF 73 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F+V + + S P F +D +++ Sbjct: 74 FNVDKEEPLIAIVRKEQRLKLPSPPGEKHPAFLFESLDYPASDRRMDAFY 123 >gi|325838540|ref|ZP_08166562.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490835|gb|EGC93137.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 110 Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 37/76 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G+SQE+L E L ++ Q V K+E LQ I+++ + Sbjct: 3 MTLGEKIKKYRQARGLSQEQLSEKLSVSRQAVTKWESDKGIPDIHNLQAIAKLFNVSLDS 62 Query: 73 FFDVSPTVCSDISSEE 88 + + S + EE Sbjct: 63 LLAMDEKIGSIVLKEE 78 >gi|315037973|ref|YP_004031541.1| Cro/CI family transcriptional regulator [Lactobacillus amylovorus GRL 1112] gi|312276106|gb|ADQ58746.1| Cro/CI family transcriptional regulator [Lactobacillus amylovorus GRL 1112] Length = 147 Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R G++Q +L +G++ Q + YE Q +++ L + + Sbjct: 2 NRIRQVRSEKGITQAELANAIGMSRQGLAYYENNQREPKLETWQKLADYLGVSVPYLQGF 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 S ++ + S N F + + + +I+D + + + + Sbjct: 62 SDSLANGASRNSNGFGFFNFSEEANE-----AKINDQSLIDMLYMIYKQ 105 >gi|310815924|ref|YP_003963888.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] gi|308754659|gb|ADO42588.1| transcriptional regulator, XRE family [Ketogulonicigenium vulgare Y25] Length = 183 Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R RM G+SQ L + +G+ + E G L+ I + L ++ FF Sbjct: 6 IGGRLRALRMARGLSQRVLAKRVGVPNSTISLIESGRANPSVGSLKRILDGLPIGMAEFF 65 Query: 75 DVSPTVCSDISSEENNVMDF 94 P + + + Sbjct: 66 AFDPEAQRQVFFAAEELREI 85 >gi|291526868|emb|CBK92454.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 190 Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 1/99 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G ++ R +G++QE+ E L ++ + + ++E G N S L +I+E+ I Sbjct: 4 KKIGSFLKELRKEMGITQEEFAEKLDVSSRTISRWETGANMPDISLLVNIAEIFNVSIPE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + E V + +S + ++ Sbjct: 64 IING-ERKSEIMEKEAKKVAEAMSDYATAEKAVLLKRVK 101 >gi|159043770|ref|YP_001532564.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911530|gb|ABV92963.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 468 Score = 54.8 bits (130), Expect = 3e-06, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 8/127 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R +Q ++ + LG++ V E + L ++E Sbjct: 6 VGPRLRALRRERKQTQAEMAQALGVSPAYVNLLENNQRSLSVQMLMALTETYNVDWRDL- 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 V + ++ + + D + T L +D +LV ++ + +R Sbjct: 65 -VKDDAATQLTDLRHAMQDPVFTDAAPDLTELRAALDHAP------KLVSRLLQLHQAHR 117 Query: 135 TIEEECM 141 + E+ M Sbjct: 118 STLEKVM 124 >gi|327473016|gb|EGF18443.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 158 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 2/115 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G++Q+++ E GI Q++E G + G L+ ++ I + Sbjct: 42 ERLKELRKEAGLTQKQIAEKFGIKQPNYQQWESGKRKPGEETLKKFADFFNVSIDYLLGK 101 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + SD + + + L + + +++ +IE + I + K Sbjct: 102 TDNKKSDEINLSE--FEILYRKTSKNLTERQKRDLEEVLKEVLIERQKLIEENNK 154 >gi|229815891|ref|ZP_04446215.1| hypothetical protein COLINT_02947 [Collinsella intestinalis DSM 13280] gi|229808586|gb|EEP44364.1| hypothetical protein COLINT_02947 [Collinsella intestinalis DSM 13280] Length = 201 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + VG RIR+ R G++Q +L +T Q V +E+G LQ +++ L + + Sbjct: 3 IASKVGSRIRILREAAGLTQSELAATAYVTRQSVGNWERGNTLPDVQSLQLVAKALNTKV 62 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFIS 96 D P + + + + ++ Sbjct: 63 DGLLGDGLPDMLEETAEARRQLTHCLA 89 >gi|170016279|ref|YP_001723001.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169804961|gb|ACA83577.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 199 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I++ R ++QE+LG+ L +T Q + +E G + G + + IS + Sbjct: 1 MLIGVKIKMIREAFDLTQEQLGKELHLTRQTISSWENGKSYPGITDILSISNKYNVSLDE 60 Query: 73 FFDVSPT 79 Sbjct: 61 LMKEDIE 67 >gi|167033912|ref|YP_001669143.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166860400|gb|ABY98807.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 199 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 3/106 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R GM+ +L +T + + E+ ++ L +I+ L I +F Sbjct: 19 FLGTRIRGLRKRRGMTLAELAAHSELTAGYISQLERNLSYPSIPALFNIARSLGVTIQWF 78 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 F T + +S + Q+ + +++ Sbjct: 79 FASEATTAPEDQGYVVRRNSRLSVHYEDGIV---DQLLTPQPNRQL 121 >gi|153011249|ref|YP_001372463.1| hypothetical protein Oant_3929 [Ochrobactrum anthropi ATCC 49188] gi|151563137|gb|ABS16634.1| protein of unknown function DUF955 [Ochrobactrum anthropi ATCC 49188] Length = 483 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 2/117 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R G++Q + E LGI+ + E+ + L ++ V + + Sbjct: 22 GPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSLQA 81 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 S + + + ++ + P +L + V I++L R+ +++ Sbjct: 82 ESGSTITGLKEVFSDPLLTGELPGDQELVEIGEAAPNAAV--GIMKLYRAYREQQQR 136 >gi|307608926|emb|CBW98330.1| putative repressor [Legionella pneumophila 130b] Length = 227 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESP 69 + +GKRI R G++ + LGE G Q + +E+GV G ++ ++ L+ Sbjct: 6 IKKEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGVRTPGPEEIKSLARALDVS 65 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ +S + + + ++ + + Sbjct: 66 PAYLMCLSDELQFKEAKNPSQLIPLLDYRQACE 98 >gi|307545572|ref|YP_003898051.1| XRE family transcriptional regulator [Halomonas elongata DSM 2581] gi|307217596|emb|CBV42866.1| transcriptional regulator, XRE family [Halomonas elongata DSM 2581] Length = 200 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 31/92 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R +SQ +L + +T + E+ S L+ I + L I+ FF Sbjct: 7 VGARLRQLRQERQLSQRELAKRAQVTNSTISLIEQNSVSPSVSSLKKILDALPVSITAFF 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + + +L Sbjct: 67 AGEEPSHPRPFYRAEELTEIGDGVLSWRLVAA 98 >gi|289168100|ref|YP_003446369.1| transcriptional regulator [Streptococcus mitis B6] gi|288907667|emb|CBJ22504.1| transcriptional regulator [Streptococcus mitis B6] Length = 288 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ RR L MSQ +L E + Q+ + E G GA L +S+ L+ I +FF+ Sbjct: 8 RLKNRRKELKMSQRELAEGI-CKQGQISRLENGEFTPGADFLYALSKKLKVSIDYFFNEQ 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 D SE + T + +Y +++ VKV + Sbjct: 67 IVEEIDELSEFKKLAQTFITNRNYESLKYIYELESVKVHR 106 >gi|162449406|ref|YP_001611773.1| putative regulator of molybdate uptake [Sorangium cellulosum 'So ce 56'] gi|161159988|emb|CAN91293.1| putative regulator of molybdate uptake [Sorangium cellulosum 'So ce 56'] Length = 371 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 15/129 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R RR G+SQ L E +T Q V E G ++ L+ + F Sbjct: 10 NRVRERREARGLSQVALAERARLTRQSVGAIEAGRATPAVDVALRLASALDCSVEVLF-G 68 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRY-FIQIDDVKVR-------------QKIIEL 122 P+ +D+++E + +R+ ++ VR + ++E Sbjct: 69 EPSAVADLATETDAPAALGRAAVARIADRWVSYPLEQDAVRVAADGIVTGERRGRAVVEP 128 Query: 123 VRSIVSSEK 131 +R++ E+ Sbjct: 129 LRALAEVEE 137 >gi|54296142|ref|YP_122511.1| hypothetical protein lpp0165 [Legionella pneumophila str. Paris] gi|53749927|emb|CAH11312.1| hypothetical protein lpp0165 [Legionella pneumophila str. Paris] Length = 227 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESP 69 + +GKRI R G++ + LGE G Q + +E+GV G ++ ++ L+ Sbjct: 6 IKKEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGVRTPGPEEIKSLARALDVS 65 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ +S + + + ++ + + Sbjct: 66 PAYLMCLSDELQFKEAKNPSQLIPLLDYRQACE 98 >gi|322411261|gb|EFY02169.1| Hypothetical phage associated protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 169 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 48/132 (36%), Gaps = 7/132 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q+ L + +G+ F+ +Q +E G + + + Q +++ + + Sbjct: 2 NRLKELRKEKGLTQQGLADDIGVHFRTLQNWENGKADIKSDKAQTLADFFGVSVGYLLGF 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY--- 133 + E+N I I +L+ ++ S ++ Sbjct: 62 ---GTVEEELEKNRRDMISQWKKESDALLELGFILSDSDIDVISQLLHNMSSRNSEHFFK 118 Query: 134 -RTIEEECMVEQ 144 ++ + E Sbjct: 119 LVEYKDNFIAEH 130 >gi|58336583|ref|YP_193168.1| transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227903134|ref|ZP_04020939.1| helix-turn-helix motif protein [Lactobacillus acidophilus ATCC 4796] gi|58253900|gb|AAV42137.1| putative transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227869120|gb|EEJ76541.1| helix-turn-helix motif protein [Lactobacillus acidophilus ATCC 4796] Length = 321 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 40/124 (32%), Gaps = 12/124 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE L E + ++ Q V K+E + ++ +SE+ + Sbjct: 1 MKLGQKITQLRKKSHLSQEALAEKMNVSRQAVSKWESNQSIPDIEKIVDLSELFGVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + I D + + +E+ + E Sbjct: 61 LLKNGTPSFELPGKTTEEKQ-----------IKKLPSI-DDQQITQYLEVAKKTAHFESL 108 Query: 133 YRTI 136 + Sbjct: 109 SIAL 112 >gi|55820932|ref|YP_139374.1| transcriptional regulator [Streptococcus thermophilus LMG 18311] gi|55822854|ref|YP_141295.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066] gi|55736917|gb|AAV60559.1| transcriptional regulator [Streptococcus thermophilus LMG 18311] gi|55738839|gb|AAV62480.1| transcriptional regulator [Streptococcus thermophilus CNRZ1066] Length = 229 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 47/120 (39%), Gaps = 25/120 (20%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R GMSQ + + LGI+ +E G + L ++E+ ++F Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 ++ ++++ + + RQ+ + ++++ ++ + Sbjct: 64 E------------------------HEIVEVYLEL-NEENRQEALRFTKALLEEQEAEKK 98 >gi|163941533|ref|YP_001646417.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863730|gb|ABY44789.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 123 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 8/128 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ +R R ++ + LG+ L + + YE G + L ++ E + Sbjct: 1 MIGENLRKLRKTNNLTMKDLGKKLNLAESTISGYENGNRKPDYDTLNKFADFFEVSTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSEK 131 + +S++N + ++ P L +F I D ++++ + I S EK Sbjct: 61 L---GRDVAKNTSKDNEAYNPLADP---DLGLWFKDIKDASPDKQEELKQFWEFIKSKEK 114 Query: 132 KYRTIEEE 139 ++ +++ Sbjct: 115 DRKSGDKQ 122 >gi|15607606|ref|NP_214979.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|15839854|ref|NP_334891.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|148660231|ref|YP_001281754.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|148821663|ref|YP_001286417.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|167970715|ref|ZP_02552992.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|253797392|ref|YP_003030393.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254230812|ref|ZP_04924139.1| hypothetical protein TBCG_00456 [Mycobacterium tuberculosis C] gi|254363429|ref|ZP_04979475.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|254549412|ref|ZP_05139859.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289552715|ref|ZP_06441925.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|297632949|ref|ZP_06950729.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297729924|ref|ZP_06959042.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|306774562|ref|ZP_07412899.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|306779310|ref|ZP_07417647.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|306783100|ref|ZP_07421422.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|306787468|ref|ZP_07425790.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|306792019|ref|ZP_07430321.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|306796205|ref|ZP_07434507.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|306802063|ref|ZP_07438731.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|306806274|ref|ZP_07442942.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|306966470|ref|ZP_07479131.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|306970666|ref|ZP_07483327.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|307078390|ref|ZP_07487560.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|307082949|ref|ZP_07492062.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|313657253|ref|ZP_07814133.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|81669529|sp|O53750|Y465_MYCTU RecName: Full=Uncharacterized HTH-type transcriptional regulator Rv0465c/MT0481 gi|2909541|emb|CAA17420.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] gi|13879988|gb|AAK44705.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|124599871|gb|EAY58881.1| hypothetical protein TBCG_00456 [Mycobacterium tuberculosis C] gi|134148943|gb|EBA40988.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis str. Haarlem] gi|148504383|gb|ABQ72192.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|148720190|gb|ABR04815.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|253318895|gb|ACT23498.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|289437347|gb|EFD19840.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|308216911|gb|EFO76310.1| transcriptional regulator [Mycobacterium tuberculosis SUMu001] gi|308327755|gb|EFP16606.1| transcriptional regulator [Mycobacterium tuberculosis SUMu002] gi|308332117|gb|EFP20968.1| transcriptional regulator [Mycobacterium tuberculosis SUMu003] gi|308335845|gb|EFP24696.1| transcriptional regulator [Mycobacterium tuberculosis SUMu004] gi|308339508|gb|EFP28359.1| transcriptional regulator [Mycobacterium tuberculosis SUMu005] gi|308343374|gb|EFP32225.1| transcriptional regulator [Mycobacterium tuberculosis SUMu006] gi|308347283|gb|EFP36134.1| transcriptional regulator [Mycobacterium tuberculosis SUMu007] gi|308351213|gb|EFP40064.1| transcriptional regulator [Mycobacterium tuberculosis SUMu008] gi|308355866|gb|EFP44717.1| transcriptional regulator [Mycobacterium tuberculosis SUMu009] gi|308359787|gb|EFP48638.1| transcriptional regulator [Mycobacterium tuberculosis SUMu010] gi|308363727|gb|EFP52578.1| transcriptional regulator [Mycobacterium tuberculosis SUMu011] gi|308367383|gb|EFP56234.1| transcriptional regulator [Mycobacterium tuberculosis SUMu012] gi|323721139|gb|EGB30201.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|328457178|gb|AEB02601.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 474 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D D ++ + ++ L R + + Sbjct: 65 ASQDDTRLVAELREVTLDRDLDIAIDPHEVAEMVSA--HPGLACAVVNLHRRYRITTAQL 122 Query: 134 RTIEEE 139 EE Sbjct: 123 AAATEE 128 >gi|160894719|ref|ZP_02075494.1| hypothetical protein CLOL250_02270 [Clostridium sp. L2-50] gi|156863653|gb|EDO57084.1| hypothetical protein CLOL250_02270 [Clostridium sp. L2-50] Length = 416 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 45/100 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG I +R LGM+Q++L + L ++FQ + K+E G L+ ++ VL+ + Sbjct: 5 IKVGNFIMGKRKSLGMTQQQLADKLKVSFQAISKWENGTTYPNIEILRDLAIVLDVSVDE 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 S +S + + + ++ ++ DD Sbjct: 65 ILAGSERDAEGLSYSKAGIDITYTDTIKREMAKHLDTKDD 104 >gi|315266122|gb|ADT92975.1| putative phage repressor [Shewanella baltica OS678] Length = 240 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 43/87 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR +R LG++Q+ LG +G++ V ++EK + L +++ L+ +S+ Sbjct: 13 LGQRIREKRKELGITQKALGALVGVSAVAVTQWEKDETAPKGANLFALAKSLKCDLSWLL 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 + V + ++E D L Sbjct: 73 NGQVAVKPESNAEWAGGFDLWDNDSPL 99 >gi|146319855|ref|YP_001199566.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|145690661|gb|ABP91166.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|292557469|gb|ADE30470.1| Helix-turn-helix motif-containing protein [Streptococcus suis GZ1] Length = 121 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + ++IR+ R +SQ++L E L I+ Q V K+E G +L ++E+ + Sbjct: 2 IMKQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSL 61 Query: 71 SFFFDVSPTVCSDISSEENNV--MDFISTPDGLQLNR 105 + + + + +F++ L R Sbjct: 62 DYLVLGKEPEKEIVVEQRGKMNGWEFLNEESKRPLTR 98 >gi|313885500|ref|ZP_07819250.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619230|gb|EFR30669.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 327 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 2/99 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE+ E LG++ Q V K+E + +RL +S++ + Sbjct: 1 MILADKIIELRKKNGWSQEEFAEMLGVSRQSVSKWEGAQSTPELNRLIQMSKIFSVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 ++ + D L+ ++++ Sbjct: 61 LLKDDVENLDPEQADLEWLEDR--RKFSLEEANSYLKLK 97 >gi|197123495|ref|YP_002135446.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|196173344|gb|ACG74317.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] Length = 477 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 43/123 (34%), Gaps = 1/123 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G ++R R ++Q +L + LGI+ + E + A L ++++ + + Sbjct: 7 HLGAKVRALRRQRNLTQVQLADRLGISASYLNLIEHNRRPLPAQLLIKLADLFQLDLKSL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + E F + R + ++ L ++ + + Sbjct: 67 STENHARVVADLMEVFGDPLFEAHDVTNAEVRDLAS-SSPTAARAVLALYQAYRGAREAS 125 Query: 134 RTI 136 T+ Sbjct: 126 DTL 128 >gi|229160095|ref|ZP_04288097.1| hypothetical protein bcere0009_8930 [Bacillus cereus R309803] gi|228623406|gb|EEK80230.1| hypothetical protein bcere0009_8930 [Bacillus cereus R309803] Length = 149 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKQEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRG 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKKLAYP 82 >gi|326790576|ref|YP_004308397.1| hypothetical protein Clole_1473 [Clostridium lentocellum DSM 5427] gi|326541340|gb|ADZ83199.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 189 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 36/101 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G RI+ R G SQ + E +G+ YE ++ I E+L+ IS Sbjct: 7 IQIGTRIKEIRKSKGFSQAYMAEKIGVNRTTYSNYENNNREPNLKTIEKICEILDVTISD 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + + D S + + R + ++ Sbjct: 67 IVSDTQKNITVDYWRGMMDTDLNSIKEIEENTRGYSGLEVP 107 >gi|259909785|ref|YP_002650141.1| putative prophage regulatory ptotein [Erwinia pyrifoliae Ep1/96] gi|224965407|emb|CAX56939.1| putative prophage regulatory ptotein [Erwinia pyrifoliae Ep1/96] gi|283479880|emb|CAY75796.1| putative HTH-type transcriptional regulatory protein PF1851 [Erwinia pyrifoliae DSM 12163] Length = 133 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 10/119 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+R+ R G++Q +L + L ++ Q VQ +E G R+ S L ++++ P+ Sbjct: 24 IALGERMTRLRKEQGITQSELADKLNVSQQTVQAWEAGRRRIKVSSLPFVAQIFSVPLEE 83 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 F SP QL + K ++ I E++ ++++ + Sbjct: 84 LFGGSPEKVLRKRGPTAKWQ---------QLIEEVDDLPKAK-QKMIAEMLTALIAQAR 132 >gi|153952958|ref|YP_001393723.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146345839|gb|EDK32375.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 179 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 57/123 (46%), Gaps = 11/123 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R G++ + + E G++ + ++E+G+ + L I+ VL I++ Sbjct: 1 MNIGEKVKELRNKKGLTLKTMSEKTGLSTGFLSQFERGITTIAVEHLSTIATVLNVRINY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII--ELVRSIVSSE 130 FFD E+ ++ P Q+N+ + K++ EL+ + E Sbjct: 61 FFDDE---------EKELIIRSYDQPFVRQINKAIYKSLSRYPEDKMLSPELIELLPKDE 111 Query: 131 KKY 133 +Y Sbjct: 112 HQY 114 >gi|108800307|ref|YP_640504.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119869435|ref|YP_939387.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|126435930|ref|YP_001071621.1| XRE family transcriptional regulator [Mycobacterium sp. JLS] gi|108770726|gb|ABG09448.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119695524|gb|ABL92597.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|126235730|gb|ABN99130.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS] Length = 193 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 4/121 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N+ + VD V KR+R R G + E++ I + + E G R+ L Sbjct: 1 MQANEASEDSVDQRVRKRLRELRRQRGFTLEEVAARSAIDVSTLSRLESGKRRLALDHLP 60 Query: 61 HISEVLESPISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ L P V SD + ++ F + R Sbjct: 61 RLAAALAVTTDELLRSPEAEDPRVRSDSHTRHGVTYWPLTRQGSPSGLHAFKLRVSARRR 120 Query: 117 Q 117 + Sbjct: 121 K 121 >gi|91976769|ref|YP_569428.1| transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91683225|gb|ABE39527.1| transcriptional regulator [Rhodopseudomonas palustris BisB5] Length = 106 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 1/106 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPIS 71 + G+RI+ R G++ ++L + G + + K R A +L I+ L + Sbjct: 1 MKFGQRIKDLRTKKGLTLDQLAQETGSSKSYIWELENKNPPRPSAEKLSAIAGALGVTVD 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + F ++ + + R +I D K R+ Sbjct: 61 YLFGADTQTLNEAEDTAFFRQYSGLPEETRRQIREMARILDTKTRK 106 >gi|228902129|ref|ZP_04066293.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 4222] gi|228857555|gb|EEN02051.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 4222] Length = 262 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 32/74 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R G+SQE L E L T Q V K+E G +L I +V E + + Sbjct: 1 MEFGEKLFKLRKEKGLSQEVLAEKLKTTRQAVSKWENGQGFPETEKLIMIGKVFEVSLDY 60 Query: 73 FFDVSPTVCSDISS 86 + ++ Sbjct: 61 LLKETAEQSNENVE 74 >gi|213019778|ref|ZP_03335581.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994608|gb|EEB55253.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 306 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 11/139 (7%) Query: 1 MVGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N +D VG+++R R+ G +Q+ L + +G T+Q + +YEKG R+ ++L Sbjct: 1 MKKENNYSNFLDYKVVGQKVRSCRIAKGYTQKDLAKKIGTTYQVILQYEKGTRRISITKL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 ++E L + V + E L L R +I D ++R+ Sbjct: 61 YELAEALSTTARDLACVQEVSNEERYEGEE----------VLNLVRRHKEIKDQELRETF 110 Query: 120 IELVRSIVSSEKKYRTIEE 138 L + I SE++ + Sbjct: 111 YLLTKFIRISEEESGKAVK 129 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 13/119 (10%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N + + VG+RI+ R+ G +QE L +GI Q++ +YE+G V L I Sbjct: 155 DNDEKKISIPYKVGQRIKEWRLRRGYTQEDLASKVGIINQRIYEYEQGRAAVSLEMLNEI 214 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++VL I+ + + + +L + +I ++R +I+ Sbjct: 215 AKVLLINITDLLPEARENENSEAELS-------------RLIEEYKKIKSQELRHVLIK 260 >gi|167759352|ref|ZP_02431479.1| hypothetical protein CLOSCI_01699 [Clostridium scindens ATCC 35704] gi|167662909|gb|EDS07039.1| hypothetical protein CLOSCI_01699 [Clostridium scindens ATCC 35704] Length = 257 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 37/81 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R GMSQE+L + LGIT Q V K+E G S+L +SE+ + I + Sbjct: 5 EKLIQLRRKQGMSQEQLADRLGITRQSVSKWESGSAAPELSKLITLSEMFQVSIDYLVKD 64 Query: 77 SPTVCSDISSEENNVMDFIST 97 + E + + + Sbjct: 65 AEEPKGAEKEESRRLEEKVDN 85 >gi|268590993|ref|ZP_06125214.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291313798|gb|EFE54251.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 90 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 44/81 (54%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + VG+RI +R LG + +L + LG++ QQ+ +YE+G ++ L ++ ++ +PI Sbjct: 10 IHYMVGQRILEKRRELGYTGFQLAQLLGVSQQQISRYERGKIKIDLFHLFKLAFLMGTPI 69 Query: 71 SFFFDVSPTVCSDISSEENNV 91 +F + + S+ ++ Sbjct: 70 DWFLEDISSQLSENGRLDDTQ 90 >gi|331086747|ref|ZP_08335824.1| hypothetical protein HMPREF0987_02127 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409913|gb|EGG89348.1| hypothetical protein HMPREF0987_02127 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 242 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 15/132 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R++ RR++L +S++KL E IT Q + YE G++ L + + LE ++ Sbjct: 1 MSLGDRLKERRVMLNLSRKKLSEITYITPQALANYENGISTPKFEILVSLFQSLECDANY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + N DF T + L + Q++D + + +L+ +++ Sbjct: 61 LYQD--------YLPANLQTDFNITKNEQDLIEKYRQLND--HGKHVAKLI-----IDEE 105 Query: 133 YRTIEEECMVEQ 144 Y + E + ++ Sbjct: 106 YARMLEGLLRKK 117 >gi|295084668|emb|CBK66191.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 138 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 6/131 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +VG+ ++ R+ LGM QE L LG++ Q++ K EK + + L I+EVL Sbjct: 12 RHVGRNLQRIRVYLGMKQEALASDLGVSQQEISKIEK-QDEIEDGLLTKIAEVLGISTDV 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D NN D +P + Q + +K++EL ++ SE++ Sbjct: 71 IKDFDVEKA---ICNINNYKDATISPGAIATVYAHNQ--QINPLEKVVELYERLLKSEQE 125 Query: 133 YRTIEEECMVE 143 I EC+ + Sbjct: 126 KIEILRECIKQ 136 >gi|240169634|ref|ZP_04748293.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 471 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 39/122 (31%), Gaps = 6/122 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L L ++ V + E + L ++E P +F Sbjct: 7 GARLRRLREEQGLTQMALARALDLSTSYVNQLENDQRPITVPVLLALTERFGLPTRYFAP 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + E + +L V Q ++ L R + + + Sbjct: 67 DTDARLVSDLREVLAEG-PATAAQIEELVARM-----PAVGQTLVNLHRRLHDATAELEA 120 Query: 136 IE 137 + Sbjct: 121 LH 122 >gi|284007818|emb|CBA73695.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 137 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 54/130 (41%), Gaps = 6/130 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ RR L +SQ L LGI + ++E+ + L +++ L S+ F Sbjct: 6 LGERIKARRQELKLSQRALASILGIAHVSISQWERNESTPKGENLMALAKTLHCEPSWLF 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + S + + L F ++ D + ELV S+ ++ Y Sbjct: 66 EEQGNLPISASELPEAPIKL--SDLQKTLLDLFDELPDSEQ----EELVESLREKKQYYD 119 Query: 135 TIEEECMVEQ 144 + E+ ++ Sbjct: 120 QLFEQLAKKR 129 >gi|94266062|ref|ZP_01289781.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] gi|93453384|gb|EAT03812.1| Helix-turn-helix motif [delta proteobacterium MLMS-1] Length = 109 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 1/104 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG+RIR RR +LG+SQ +L LGITFQ +Q++E+G L + +LE + Sbjct: 1 MNVGQRIRSRRQVLGLSQRELAARLGITFQAIQRWERGETFPRKETLPQLLAILEVGADW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ-IDDVKV 115 D+S+ +V++ + P Q+ R + + Sbjct: 61 LVGTPSLAGPDVSTIPPDVLEAVRDPRIQQIVRTAAKVLKQPAP 104 >gi|319938810|ref|ZP_08013174.1| cro/CI family Transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811860|gb|EFW08126.1| cro/CI family Transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 189 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 25/74 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R G++Q L + L Q KYE G + + ++E I + + Sbjct: 3 NRLKVLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSIENAKILAEYFGVSIPYLLGL 62 Query: 77 SPTVCSDISSEENN 90 Sbjct: 63 DDNPVLVNPGSAKE 76 >gi|261344511|ref|ZP_05972155.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567421|gb|EFB72956.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 95 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 36/87 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +VG +IR R GMS +KL E +GI+ Q +YE G + + +S++ Sbjct: 5 ISKSVGLKIRTLRESHGMSGKKLSELMGISQQHQSRYENGEVNIHVDTIYLLSQIFSVEP 64 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST 97 +FF + + + Sbjct: 65 IYFFSEFDRHNNHNEENALQKNYYTAE 91 >gi|28379011|ref|NP_785903.1| prophage Lp2 protein 9 [Lactobacillus plantarum WCFS1] gi|28271849|emb|CAD64754.1| prophage Lp2 protein 9 [Lactobacillus plantarum WCFS1] Length = 120 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 32/84 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI R ++Q L + + ++ + +E V L +S+ + Sbjct: 1 MTIGKRIANLRKQKSLTQPMLADAMNVSQSTIASWESDRRSVSNDDLIKLSDYFGVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + T + ++ DF+ Sbjct: 61 LLGKNGTPKWANEKDTKDLQDFLD 84 >gi|226323100|ref|ZP_03798618.1| hypothetical protein COPCOM_00872 [Coprococcus comes ATCC 27758] gi|225208290|gb|EEG90644.1| hypothetical protein COPCOM_00872 [Coprococcus comes ATCC 27758] Length = 316 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 39/79 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I +R LG++Q++L E L ++ + V K+E+G+ S + +L I+ Sbjct: 4 IKIGKYIAEKRKALGLTQKQLAEKLNMSDKSVSKWERGICLPDVSIYMELCSILRISINE 63 Query: 73 FFDVSPTVCSDISSEENNV 91 F ++ + ++ Sbjct: 64 FLAGEDIGAENVIEKSDSN 82 >gi|206560147|ref|YP_002230911.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198036188|emb|CAR52084.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 240 Score = 54.8 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 6/116 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +++G +IR R L ++ ++ GI+ + + E+G + L I++ L + Sbjct: 60 VAVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTM 119 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +F D S F ++ F ++ ++ +K+ ++ + Sbjct: 120 QYFIDTPTEARSVCRRNAMQYFQFANS------ASLFARLTNLVDGRKLDAILVRM 169 >gi|238061562|ref|ZP_04606271.1| DNA-binding protein [Micromonospora sp. ATCC 39149] gi|237883373|gb|EEP72201.1| DNA-binding protein [Micromonospora sp. ATCC 39149] Length = 464 Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 7/122 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R +SQ +L L I+ + + E + L I+EV + F Sbjct: 10 GARLRRMREDRALSQSRLARLLNISPSYLNQIEHDSRPLTVPVLMRITEVFGVDPTVFAP 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E P L ++ +V + +++L R ++++ Sbjct: 70 RDTPRLVAGLREALP-----GRPSVADLTELATRL--PEVAEAVLDLHRRYRQADEQLAE 122 Query: 136 IE 137 + Sbjct: 123 LL 124 >gi|227819893|ref|YP_002823864.1| XRE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338892|gb|ACP23111.1| putative transcriptional regulator Xre familiy [Sinorhizobium fredii NGR234] Length = 201 Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 36/71 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R + G++ +++ + ++ + + E+ ++ L+ IS+ L +++ Sbjct: 21 MAIGGQIRELRKVKGLTLQQVADAADVSVGYLSQIERNQTKLPIGVLKKISDTLGVHMNW 80 Query: 73 FFDVSPTVCSD 83 FF S + Sbjct: 81 FFHGSDVPAQE 91 >gi|36958742|gb|AAQ87210.1| Transcriptional regulator [Sinorhizobium fredii NGR234] Length = 181 Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 36/71 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R + G++ +++ + ++ + + E+ ++ L+ IS+ L +++ Sbjct: 1 MAIGGQIRELRKVKGLTLQQVADAADVSVGYLSQIERNQTKLPIGVLKKISDTLGVHMNW 60 Query: 73 FFDVSPTVCSD 83 FF S + Sbjct: 61 FFHGSDVPAQE 71 >gi|319947404|ref|ZP_08021636.1| DNA-binding protein [Streptococcus australis ATCC 700641] gi|319746344|gb|EFV98605.1| DNA-binding protein [Streptococcus australis ATCC 700641] Length = 197 Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK+I+ R +SQ++L E + ++ Q + +E+G L +S+V E + Sbjct: 1 MQVGKQIQHYRKEKNLSQDELAEIIFVSRQSISNWERGATYPDIQNLLLLSKVFEVSLDK 60 Query: 73 FFDVSPTVCSDISSEENNV 91 I ++ + Sbjct: 61 LVKGDLETMKQIIHDQEFM 79 >gi|260662801|ref|ZP_05863695.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] gi|260552882|gb|EEX25881.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN] Length = 322 Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 3/98 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE+ E +G++ Q + K+E G + +++ +SE+ Sbjct: 1 MILADKITNLRKKEGWSQEEFAERMGVSRQSISKWEGGRSTPDMNKILQMSELFGVSTDV 60 Query: 73 FFDVS---PTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + +S N P L+L + Sbjct: 61 LLKDDLTLEDEVTTAASSVQNDNGEAIYPVSLELANEY 98 >gi|15615472|ref|NP_243775.1| hypothetical protein BH2909 [Bacillus halodurans C-125] gi|10175531|dbj|BAB06628.1| BH2909 [Bacillus halodurans C-125] Length = 189 Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 40/85 (47%), Gaps = 3/85 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NK++ + +G+R++ R GM+ ++L + G++ + + E+G + S L I+ Sbjct: 2 NKEM---LSKRIGQRLKRIRSDRGMTLDQLAKKTGVSKPMLGQIERGESNPTVSTLWKIA 58 Query: 64 EVLESPISFFFDVSPTVCSDISSEE 88 L + F + + I ++ Sbjct: 59 TGLHVSFTAFIEDEKPNVTVIKRDQ 83 >gi|253574698|ref|ZP_04852038.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845744|gb|EES73752.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 129 Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 39/103 (37%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V VGK +R R + G++QE+L E + + E+G V L I++ L+ Sbjct: 22 DVAKQVGKNVRYYRKLKGLTQEQLAESTETYGSYIGRLERGEQNVQLETLHKIADALQIS 81 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + F + ++ + + R + + + Sbjct: 82 VYALFRNPGYDELQDQTWIWQIVQLLQEQPAEEQARAYRVLKE 124 >gi|228934904|ref|ZP_04097735.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824804|gb|EEM70605.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 277 Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNESVD 89 >gi|229092601|ref|ZP_04223752.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-42] gi|228690754|gb|EEL44530.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-42] Length = 277 Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNESVD 89 >gi|206559569|ref|YP_002230330.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198035607|emb|CAR51494.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 122 Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 52/113 (46%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K + + VGK I +R+ G++QEK+ E LGI + V + E+G RL +++ Sbjct: 3 KSGTEDLAVAVGKAIAKQRIASGLTQEKVAERLGIGLEAVSRMERGTVIPTVVRLFELAD 62 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + + SD +S N ++ +ST D L F ++ R+ Sbjct: 63 IFACDAADLLTEASNRSSDQASHLNRLLSRLSTSDRAMLLEVFERLSTRLTRR 115 >gi|229104167|ref|ZP_04234839.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-28] gi|228679184|gb|EEL33389.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-28] Length = 272 Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNEKED 89 >gi|227820316|ref|YP_002824287.1| XRE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339315|gb|ACP23534.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 472 Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 8/128 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R +Q + E +GI+ + + E V A+ L ++E + I+ Sbjct: 6 LYIGRKVRELREANRATQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIAE 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 SE F + LQ + Q L +++ + Sbjct: 66 LSSGEGDRLLSALSEALTDPLFETYAPNLQELKLITQNAP--------GLAHALIKCHQA 117 Query: 133 YRTIEEEC 140 YR E+ Sbjct: 118 YRRNSEQL 125 >gi|116627720|ref|YP_820339.1| XRE family transcriptional regulator [Streptococcus thermophilus LMD-9] gi|116100997|gb|ABJ66143.1| transcriptional regulator [Streptococcus thermophilus LMD-9] Length = 229 Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 47/120 (39%), Gaps = 25/120 (20%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R GMSQ + + LGI+ +E G + L ++E+ ++F Sbjct: 4 GQRLKEIREAQGMSQASVAKHLGISRSSYFNWENGKTKPNQKNLSVLAELFGVAETYFLS 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 ++ ++++ + + RQ+ + ++++ ++ + Sbjct: 64 E------------------------HEIVEVYLEL-NEENRQEALRFTKALLEEQEAEKK 98 >gi|49479808|ref|YP_035283.1| DNA-binding protein transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331364|gb|AAT62010.1| possible transcriptional regulator; possible DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 149 Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLSS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|118445169|ref|YP_879281.1| MerR family transcriptional regulator [Clostridium novyi NT] gi|118135625|gb|ABK62669.1| Transcriptional regulator, MerR family [Clostridium novyi NT] Length = 147 Score = 54.4 bits (129), Expect = 4e-06, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 38/82 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG+ IR R G++Q +L E + +Q+YEKG + L+ I++ L P+ Sbjct: 1 MNVGENIRKYRKEKGLTQSELAEKTHLATNTIQRYEKGHRQPTMQVLEKIADALGIPVYR 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 I EN + +F Sbjct: 61 LTFNDEESLKAIEKAENILKNF 82 >gi|307126198|ref|YP_003878229.1| phage transcriptional repressor [Streptococcus pneumoniae 670-6B] gi|306483260|gb|ADM90129.1| phage transcriptional repressor [Streptococcus pneumoniae 670-6B] gi|321157139|emb|CBW39125.1| Putative phage repressor protein [Streptococcus phage 23782] gi|321157188|emb|CBW39173.1| Putative phage repressor protein [Streptococcus phage 11865] Length = 244 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 10/129 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +NVG+RI+ RR L MS ++L E +G++ + +YEKG VG L+ I++ L Sbjct: 1 MNVGERIKQRRKALKMSADELAESVGVSRSTIFRYEKGDIEKVGPEVLKKIADKLNVSPG 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 ++P ++ +++ + ++ + + Sbjct: 61 DLMGWEDNQQELKIP---------TSPLVHKITEKVVKLSTPRKQKVLNYANEQLKEQNN 111 Query: 132 KYRTIEEEC 140 K TIEE+ Sbjct: 112 KVITIEEKL 120 >gi|307317593|ref|ZP_07597032.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306896751|gb|EFN27498.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 89 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 35/81 (43%), Positives = 44/81 (54%), Gaps = 4/81 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K +D +G R+R R++ GMSQ L E LGITFQQ+QKYEKG NR+ AS L I + Sbjct: 6 KAQTTHIDQKIGARVREFRLLRGMSQGALAEKLGITFQQMQKYEKGANRISASALILICK 65 Query: 65 VLESPISF----FFDVSPTVC 81 L + FFD Sbjct: 66 ELGITPNHILGAFFDNDEDTE 86 >gi|257791197|ref|YP_003181803.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317488068|ref|ZP_07946646.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA] gi|325831244|ref|ZP_08164536.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257475094|gb|ACV55414.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316912819|gb|EFV34350.1| hypothetical protein HMPREF1023_00344 [Eggerthella sp. 1_3_56FAA] gi|325486845|gb|EGC89292.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 147 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 29/68 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G + R ++QE L L +T Q V ++E G G + I+ + P++ Sbjct: 1 MAIGDVLVRIRKERNLTQEDLARKLYVTRQAVSRWENGETTPGIDMCKLIAATCDVPVAL 60 Query: 73 FFDVSPTV 80 ++ Sbjct: 61 LLEMPDGA 68 >gi|164687366|ref|ZP_02211394.1| hypothetical protein CLOBAR_01007 [Clostridium bartlettii DSM 16795] gi|164603790|gb|EDQ97255.1| hypothetical protein CLOBAR_01007 [Clostridium bartlettii DSM 16795] Length = 125 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 47/113 (41%), Gaps = 2/113 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R +SQ KL + LGI+ + YE+G + L I++ + + Sbjct: 3 GQNLKKLRTSKNLSQSKLSKILGISSSTIGMYEQGRRFPDQTILTKIADFFDVSTDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF--IQIDDVKVRQKIIELVRSI 126 +P + + M+FI + + ++ D ++ +L++ I Sbjct: 63 RNPQNPPTEFNNATDAMEFILKLPTVMAYGGYDATKLSDEEIIDFANDLLQQI 115 >gi|295105300|emb|CBL02844.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 118 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 16/121 (13%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN I +GK+I+ R +GM+Q++L ++ + + E G L I VL Sbjct: 1 MPNADAIALGKQIKAVRKAMGMTQDQLALKSHVSVKYIANIENGKQNPSFDILSAILHVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + + + E + ++R+ ++E RS+ Sbjct: 61 PLSLDSIINPNLSELESECREWD----------------AIYLACPPEMRKTLLEATRSL 104 Query: 127 V 127 Sbjct: 105 A 105 >gi|238025551|ref|YP_002909783.1| XRE family transcriptional regulator [Burkholderia glumae BGR1] gi|237880216|gb|ACR32548.1| Transcriptional regulator, XRE family protein [Burkholderia glumae BGR1] Length = 191 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 46/117 (39%), Gaps = 6/117 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R L ++ +++ GI+ + + E+G + L I+ L + +F Sbjct: 14 AIGARMRALRQRLKLTLDEVAAAAGISKPFLSQVERGRATPSLASLAGIARALGVTMQYF 73 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + ++ F + F ++ + +++ ++ + + E Sbjct: 74 VEAPSEAKAVRRADTLQFFSFADS------ANSFARMTNPGSSRQLDAVLVRLPARE 124 >gi|152979702|ref|YP_001345331.1| XRE family transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150841425|gb|ABR75396.1| transcriptional regulator, XRE family [Actinobacillus succinogenes 130Z] Length = 114 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 43/65 (66%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+RI+ +R +G S EKL E + ++ QQ+ +YE+G +++ + L I+ L++PIS Sbjct: 10 DKLIGQRIQQKRKEMGFSAEKLAEYIDLSQQQLSRYERGASKINVAHLIDIAIFLKTPIS 69 Query: 72 FFFDV 76 +FF Sbjct: 70 WFFQD 74 >gi|78066472|ref|YP_369241.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77967217|gb|ABB08597.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 191 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 6/116 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +++G +IR R L ++ ++ GI+ + + E+G + L I++ L + Sbjct: 11 VAMSLGNKIRALRQRLKLTLDETSTIAGISKPFLSQVERGRATPSITSLVRIAKALGVTM 70 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +F D S F ++ F ++ ++ +K+ ++ + Sbjct: 71 QYFIDTPTEARSVCRGNALQYFQFTNS------ASRFARLTNLVDGRKLDAILVRM 120 >gi|47093927|ref|ZP_00231665.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|47017687|gb|EAL08482.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] Length = 194 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 39/81 (48%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D+ +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 12 DIDMEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGST 71 Query: 70 ISFFFDVSPTVCSDISSEENN 90 FFD I E + Sbjct: 72 PKDFFDEEEHNQKVIYGELEH 92 >gi|225017440|ref|ZP_03706632.1| hypothetical protein CLOSTMETH_01366 [Clostridium methylpentosum DSM 5476] gi|224949850|gb|EEG31059.1| hypothetical protein CLOSTMETH_01366 [Clostridium methylpentosum DSM 5476] Length = 172 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R +G+SQEKL E +G++ Q + K+E G+ ++ +SE + + Sbjct: 12 EKIQRERKKMGLSQEKLAEKIGVSRQAITKWENGLASPELEKIVSLSECFKVSTDYLLKD 71 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 + T + +S L Sbjct: 72 NITEPTPPQESALKGNKRMSWRTWL 96 >gi|169334227|ref|ZP_02861420.1| hypothetical protein ANASTE_00625 [Anaerofustis stercorihominis DSM 17244] gi|169258944|gb|EDS72910.1| hypothetical protein ANASTE_00625 [Anaerofustis stercorihominis DSM 17244] Length = 194 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 41/87 (47%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I +G I+ R+ M+Q+++G+ L ++ + + K+E G S L +SEVL++ I Sbjct: 3 NIKIGNLIKTLRIKKDMTQKEIGDMLNVSDKTISKWETGNGLPDISILSSLSEVLDTQID 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTP 98 + + + N ++ Sbjct: 63 YLLTGEISTNDNKGGNMKNTKFYVCDK 89 >gi|147677806|ref|YP_001212021.1| SOS-response transcriptional repressors [Pelotomaculum thermopropionicum SI] gi|146273903|dbj|BAF59652.1| SOS-response transcriptional repressors [Pelotomaculum thermopropionicum SI] Length = 224 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R ++Q +LG LG++ + YEKG ++G L ++ L P+ +F Sbjct: 5 IGARIKKAREEKYLTQAELGVKLGVSATAINYYEKGKRKIGIDDLYRMANALGKPLEYFL 64 Query: 75 DVS 77 Sbjct: 65 GRD 67 >gi|296269222|ref|YP_003651854.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092009|gb|ADG87961.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 432 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 21/154 (13%), Positives = 54/154 (35%), Gaps = 26/154 (16%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI++ R G+SQ +L ++ V E G + L+ I++ L +++ Sbjct: 7 IGERIKMLRKQRGLSQAQL-AHPELSDSYVSLIESGKRTPTPAVLELIAQKLGCSLTYLI 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDDVKVRQKI-------------- 119 + + L + R + ++ + + + + Sbjct: 66 NGVTNEELEEIELALRFARLALENGDLAEARRRYAELLEDRNLESLAAQRQDARFGYALA 125 Query: 120 ----------IELVRSIVSSEKKYRTIEEECMVE 143 I+++RS+ + + +T E + Sbjct: 126 TEACGDLAEAIDVLRSLRDEDTEGQTPERRIQIS 159 >gi|293433580|ref|ZP_06662008.1| DNA-binding protein [Escherichia coli B088] gi|291324399|gb|EFE63821.1| DNA-binding protein [Escherichia coli B088] Length = 200 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 40/112 (35%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M I + V+ V +RI+L R +S ++L G++ + + E + L Sbjct: 8 MTDVNSIVSTVNEAVSQRIKLYRKQKKISLDELSRRAGVSKGALVEIEGCRANPSITMLC 67 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 ++ + ++ F DVS + +E + G D Sbjct: 68 RLAAAMGVSVADFVDVSSKPTVHLITESEIPELWEGEKGGKARLLAGSGGPD 119 >gi|268608518|ref|ZP_06142245.1| DNA-binding protein [Ruminococcus flavefaciens FD-1] Length = 190 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG +I+ R G SQE L E ++ Q V +E + L + + + Sbjct: 1 MEVGNQIKKHRTKNGWSQEVLAEKAFVSRQTVSNWENNKSYPDIHSLVLLGNIFNISLDE 60 Query: 73 FFDVSPTVCSDIS--SEENNVMDFISTPDGLQLN 104 V + +E + GL L Sbjct: 61 LIKGDVEVMKNEINKNEVKEFNTWAWVMTGLMLI 94 >gi|229827219|ref|ZP_04453288.1| hypothetical protein GCWU000182_02605 [Abiotrophia defectiva ATCC 49176] gi|229788837|gb|EEP24951.1| hypothetical protein GCWU000182_02605 [Abiotrophia defectiva ATCC 49176] Length = 202 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ +RI+ R G+SQE+L + + ++ Q V K+E G + ++ +SE E + Sbjct: 1 MNISERIQELRKAKGISQEELADKIDVSRQAVSKWENGQSIPDLEKVILLSEYFEVTTDY 60 Query: 73 FFDVSPTVCSDISS 86 V + + Sbjct: 61 ILKGIEPVKKNGTD 74 >gi|30260593|ref|NP_842970.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Ames] gi|47777813|ref|YP_022528.1| prophage lambdaba04, DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183444|ref|YP_026696.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Sterne] gi|65317858|ref|ZP_00390817.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|254686819|ref|ZP_05150677.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724894|ref|ZP_05186677.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. A1055] gi|254738955|ref|ZP_05196657.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254756199|ref|ZP_05208228.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Vollum] gi|254762018|ref|ZP_05213867.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30253961|gb|AAP24456.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Ames] gi|47551518|gb|AAT35262.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177371|gb|AAT52747.1| prophage LambdaBa04, DNA-binding protein [Bacillus anthracis str. Sterne] Length = 114 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 30/75 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+ ++ R G++QE+L L ++ Q++ +E + L I+ + Sbjct: 2 RHFGQILKKLRKSRGLTQEQLSHKLNLSRSQIKNWETDRYQPDIDTLVIIASFFNVSVDA 61 Query: 73 FFDVSPTVCSDISSE 87 + + +E Sbjct: 62 LIGFTNEFDEEPLTE 76 >gi|326201072|ref|ZP_08190944.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325988640|gb|EGD49464.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 213 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 33/66 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE+L + LG++ Q V K+E G + ++ +SE + + Sbjct: 1 MNISDRIQSLRKTKGISQEQLADELGVSRQAVSKWESGQSMPDIEKIILMSEYFKITTDY 60 Query: 73 FFDVSP 78 Sbjct: 61 LLKGID 66 >gi|229146197|ref|ZP_04274572.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST24] gi|228637256|gb|EEK93711.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST24] Length = 277 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 34/82 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ + Sbjct: 68 VFEVSLDYLLKETAEQSNEKEN 89 >gi|163790412|ref|ZP_02184843.1| putative transcriptional regulator [Carnobacterium sp. AT7] gi|159874316|gb|EDP68389.1| putative transcriptional regulator [Carnobacterium sp. AT7] Length = 170 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 37/81 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ R G SQ + + L I+ Q + K+E G + + L +S E I Sbjct: 1 MELGERLKQSRTNKGFSQTNVADHLNISRQSISKWENGNSLPDLANLVKLSNYYEVSIDE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + + I + E + D Sbjct: 61 LLKENKQLKNKIEANELEIED 81 >gi|257455791|ref|ZP_05621017.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] gi|257446805|gb|EEV21822.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] Length = 70 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N + I G++IR R +SQE+L E G + E+G ++ + Sbjct: 1 MENDILIKFGQKIRQLRKAKNLSQEQLAELTGFHRNYIGMVERGERNPALVNIEIFANAF 60 Query: 67 ESPISFFFD 75 + +S FD Sbjct: 61 DLSLSELFD 69 >gi|107029107|ref|YP_626202.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116689734|ref|YP_835357.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170733070|ref|YP_001765017.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105898271|gb|ABF81229.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116647823|gb|ABK08464.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] gi|169816312|gb|ACA90895.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 191 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 7/128 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +++G +IR R L ++ ++ GI+ + + E+G + L I++ L + Sbjct: 11 VAVSLGNKIRALRQRLKLTLDETAGIAGISKPFLSQVERGRATPSITSLVRIAQALGVTM 70 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSS 129 +F D S F ++ F ++ ++ +K+ LVR Sbjct: 71 QYFIDTPTEARSVCRGNAMQYFQFANS------ASLFARLTNLVDGRKLDAILVRMPAGQ 124 Query: 130 EKKYRTIE 137 T Sbjct: 125 SPSEITTH 132 >gi|237718063|ref|ZP_04548544.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|293370030|ref|ZP_06616597.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|299147754|ref|ZP_07040817.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] gi|229452704|gb|EEO58495.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|292634948|gb|EFF53470.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|298513937|gb|EFI37823.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] Length = 138 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 6/131 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +VG+ ++ R+ LGM QE L LG++ Q++ K EK + + L I+EVL Sbjct: 12 RHVGRNLQRIRVYLGMKQEALASDLGVSQQEISKIEK-QDEIEDGLLTKIAEVLGISTDV 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D NN D +P + Q + +K++EL ++ SE++ Sbjct: 71 IKDFDVEKA---ICNINNYKDATISPGAIATVYAHNQ--QINPIEKVVELYERLLKSEQE 125 Query: 133 YRTIEEECMVE 143 I EC+ + Sbjct: 126 KIEILRECIKQ 136 >gi|169334175|ref|ZP_02861368.1| hypothetical protein ANASTE_00571 [Anaerofustis stercorihominis DSM 17244] gi|169258892|gb|EDS72858.1| hypothetical protein ANASTE_00571 [Anaerofustis stercorihominis DSM 17244] Length = 219 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 31/74 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK +++ +++ L R G++QE+L L ++ V K+E G L+ IS Sbjct: 12 KKSHLEIEVEFNEKLVLIRKEKGLTQEELASLLFVSRTAVSKWESGRGYPSIDSLKEISR 71 Query: 65 VLESPISFFFDVSP 78 V I Sbjct: 72 VFGVTIDELLCGDE 85 >gi|320354394|ref|YP_004195733.1| XRE family transcriptional regulator [Desulfobulbus propionicus DSM 2032] gi|320122896|gb|ADW18442.1| transcriptional regulator, XRE family [Desulfobulbus propionicus DSM 2032] Length = 436 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 38/106 (35%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P ++G RI+ R G+SQ++L E G+T + + EK + L ++E L Sbjct: 249 PLPGRFDLGARIKAVRKKQGLSQKELAEKAGVTPSSISQIEKNLIYPSLPALFRLAESLS 308 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 ++ FF+ + + + Sbjct: 309 IGVASFFEGLAAEAKGCVYRGSEGTGAALDKAPKGMVEGVRLLPPD 354 >gi|296110814|ref|YP_003621195.1| DNA-binding protein [Leuconostoc kimchii IMSNU 11154] gi|295832345|gb|ADG40226.1| DNA-binding protein [Leuconostoc kimchii IMSNU 11154] Length = 246 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 33/74 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R ++Q++ + I++Q V +E + A + I + + P+++ Sbjct: 1 MTIGDQIKQLRTAHNLTQQEFATKIYISYQSVSNWENHRSYPSAEIMLLIIDTFDLPLNY 60 Query: 73 FFDVSPTVCSDISS 86 F D + Sbjct: 61 FMDKDIDPTTSQEE 74 >gi|197286562|ref|YP_002152434.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227357636|ref|ZP_03841989.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194684049|emb|CAR45374.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227162346|gb|EEI47350.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 105 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 3/74 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + K ++ +G+RIR R L S + + LGI+ QQ+ +YE+G NR+ + Sbjct: 1 MIDSSKT---INFRIGQRIRHLRKNLKYSGKLFAKELGISQQQLSRYERGTNRISIEFVY 57 Query: 61 HISEVLESPISFFF 74 I+E + IS+F Sbjct: 58 LITEKFDVHISYFL 71 >gi|154250733|ref|YP_001411557.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154154683|gb|ABS61900.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 204 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 52/144 (36%), Gaps = 15/144 (10%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G +K P+ +G R+R R++ G SQ +L + G+T + E+ L+ + Sbjct: 20 GEEKGPD-----IGARLRELRVMHGFSQRELAKRAGVTNGTISLIEQNRISPSVGSLKKV 74 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + I+ F + + + + + + P L+L + + I + Sbjct: 75 LDGFPISIADFLTLDMKPRAKVFYQAKELREIAGGPVSLRLLGRDTR------GRAIQMM 128 Query: 123 VRSIVSS----EKKYRTIEEECMV 142 ++ EEC + Sbjct: 129 HERYAPDADTGDEMLSHAGEECGI 152 >gi|229018822|ref|ZP_04175669.1| Helix-turn-helix domain protein [Bacillus cereus AH1273] gi|229025063|ref|ZP_04181491.1| Helix-turn-helix domain protein [Bacillus cereus AH1272] gi|228736269|gb|EEL86836.1| Helix-turn-helix domain protein [Bacillus cereus AH1272] gi|228742443|gb|EEL92596.1| Helix-turn-helix domain protein [Bacillus cereus AH1273] Length = 277 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNENVE 89 >gi|193782634|ref|NP_435827.2| hypothetical protein SMa1076 [Sinorhizobium meliloti 1021] gi|193073090|gb|AAK65239.2| conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 194 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 36/110 (32%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R+ + +L G++ + K E+G L I+ V + F Sbjct: 14 AIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFGVGLDHF 73 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F+ + + S P F +D +++ Sbjct: 74 FNADKEEPLIAIVRKEQRLKLPSPPGEKHPAFLFESLDYPASDRRMEAFY 123 >gi|291544668|emb|CBL17777.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 119 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R ++Q +L I + YE G+ A + ++++ + + Sbjct: 8 IGNKIRQLRKENKLTQAQLAAVCYINRSSIGLYENGLREPSAGTIAYLAKYFNVSVDYLL 67 Query: 75 DVSP 78 V Sbjct: 68 GVDE 71 >gi|229168347|ref|ZP_04296072.1| Helix-turn-helix domain protein [Bacillus cereus AH621] gi|228615173|gb|EEK72273.1| Helix-turn-helix domain protein [Bacillus cereus AH621] Length = 277 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQINETEH 89 >gi|332638348|ref|ZP_08417211.1| XRE family transcriptional regulator [Weissella cibaria KACC 11862] Length = 180 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I+ RR GMSQ+ L + LGI+ Q + K+E G + +S++ + Sbjct: 1 MEIGHNIQQRREDKGMSQQDLADYLGISRQSISKWENGSALPSFKNVLALSDLFVVSLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + S E+ + + Sbjct: 61 LVKGDEALIEKFESGESTKITPAN 84 >gi|254245401|ref|ZP_04938722.1| Transcriptional regulator, MerR family [Burkholderia cenocepacia PC184] gi|124870177|gb|EAY61893.1| Transcriptional regulator, MerR family [Burkholderia cenocepacia PC184] Length = 216 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 48/116 (41%), Gaps = 6/116 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +++G +IR R L ++ ++ GI+ + + E+G + L I++ L + Sbjct: 36 VAVSLGNKIRALRQRLKLTLDEAATTAGISKPFLSQVERGRATPSITSLVRIAKALGVTM 95 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +F D S + F ++ F ++ ++ +K+ ++ I Sbjct: 96 QYFIDTPTEARSVCRGDALQYFQFANS------ASSFARLTNLVDGRKLDAILVRI 145 >gi|160885067|ref|ZP_02066070.1| hypothetical protein BACOVA_03064 [Bacteroides ovatus ATCC 8483] gi|298483201|ref|ZP_07001381.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. D22] gi|156109417|gb|EDO11162.1| hypothetical protein BACOVA_03064 [Bacteroides ovatus ATCC 8483] gi|298270718|gb|EFI12299.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. D22] Length = 139 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +VG+ ++ R+ LGM QE L LG++ Q++ K EK + + L I+EVL Sbjct: 12 RHVGRNLQRIRVYLGMKQEALASDLGVSQQEISKIEK-QDEIEDGLLTKIAEVLGISTDV 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D NN D +P + +K++EL ++ SE++ Sbjct: 71 IKDFDVEKA---ICNINNYKDATISPGATATVYAAH-TQQINPLEKVVELYERLLKSEQE 126 Query: 133 YRTIEEECMVE 143 I EC+ + Sbjct: 127 KIEILRECIKQ 137 >gi|158320084|ref|YP_001512591.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140283|gb|ABW18595.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 115 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 47/120 (39%), Gaps = 5/120 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I+L R G+SQ +L + L + + YE + ++ I++ + Sbjct: 1 MLGDKIKLLREDRGLSQLELAKILEVGNSTLSMYESNTRKPDYEVIKKIADYFNVTTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 ++ + P+ + + R + + + +++I ++ + V E + Sbjct: 61 LGLTEVPNQQYHDQILEDY-----PEIISILRRNKRKLNDQDKKRIARIIEAAVIDEDEE 115 >gi|324992103|gb|EGC24025.1| XRE family transcriptional regulator [Streptococcus sanguinis SK405] gi|324994197|gb|EGC26111.1| XRE family transcriptional regulator [Streptococcus sanguinis SK678] gi|327472822|gb|EGF18249.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 205 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 E++ I++ QL+ F Sbjct: 61 LLKGM-EPVVQKEEEQSIKHRRIASNICYQLSLGF 94 >gi|304440440|ref|ZP_07400329.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371192|gb|EFM24809.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 132 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 48/125 (38%), Gaps = 5/125 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++ + N+G I+ R +SQ++L + L I+ + +YE V Sbjct: 1 MNEAIRMIS----NLGSNIKYLREKNNLSQKELAKILNISNSTLSQYESNVRVPSDDIKI 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I++ + + S + + + ++ L R ++ + + +I Sbjct: 57 LIADYFNVSLDYLLGRSSNPHKNNKKTKVDELEEDFPEGISVLYRANQKLT-PEQKDTMI 115 Query: 121 ELVRS 125 ++++ Sbjct: 116 RMIKA 120 >gi|300819725|ref|ZP_07099914.1| transcriptional repressor DicA [Escherichia coli MS 107-1] gi|300527676|gb|EFK48738.1| transcriptional repressor DicA [Escherichia coli MS 107-1] Length = 135 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 8/131 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G+RIR RR L +Q L + L I+ V ++E+ + L +S+VL+ + Sbjct: 5 NLTIGERIRYRRKNLKHTQRSLAKALKISHVSVSQWERDDSEPTGKNLFALSKVLQCSPT 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + E+ +P L+L F + + + ++ E + + K Sbjct: 65 WILFGDEDKQPTPPVEKPV----ALSPKELELLELFNALPESEQDTQLAE----MRARVK 116 Query: 132 KYRTIEEECMV 142 + + EE + Sbjct: 117 NFNKLFEELLK 127 >gi|295111675|emb|CBL28425.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Synergistetes bacterium SGP1] Length = 233 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 36/74 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI RR LGM + +L E LG+ + +YE G + S I++ L +++ Sbjct: 9 IGARIMARRKALGMKRPELAERLGVKPNTLYRYEIGSIGIRDSMKSRIAKELGVSLAYLV 68 Query: 75 DVSPTVCSDISSEE 88 + V + SEE Sbjct: 69 SGTAEVGRERGSEE 82 >gi|125717272|ref|YP_001034405.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125497189|gb|ABN43855.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 205 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 E++ I++ QL+ F Sbjct: 61 LLKGM-EPVVQKEEEQSIKHRRIASNICYQLSLGF 94 >gi|157158980|ref|YP_001463318.1| transcriptional repressor DicA [Escherichia coli E24377A] gi|157081010|gb|ABV20718.1| putative transcriptional regulator DicA [Escherichia coli E24377A] Length = 131 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 8/129 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R+ RR LG++Q++L + +G + V K+E G N L ++ L+ ++ Sbjct: 1 MLSDRLSQRRKQLGLTQQQLADMVGRSSVSVFKWESGQNEPKGQNLLALANALKCSATWL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 E +D +L F + + + +++IEL + + Sbjct: 61 LFGDEDQAPTPVDELPTELD----SRQKRLLELFDSLPESEKEKQLIEL----EDKVENF 112 Query: 134 RTIEEECMV 142 + EE +V Sbjct: 113 NRLFEELLV 121 >gi|331092227|ref|ZP_08341055.1| hypothetical protein HMPREF9477_01698 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401659|gb|EGG81238.1| hypothetical protein HMPREF9477_01698 [Lachnospiraceae bacterium 2_1_46FAA] Length = 154 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 27/122 (22%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I L+R M+QE+L E LG++ + + K+E G S ++++ + LE ++ F Sbjct: 6 IGKYISLKRKQKNMTQEQLAEKLGVSNKTISKWETGKCMPDYSIIKNLCDELEITVAELF 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 D + R + +++ + L+R I EK+ Sbjct: 66 DGETSGEKS--------------------VRVY-------DKEQFLNLLRRIQELEKQKN 98 Query: 135 TI 136 T+ Sbjct: 99 TL 100 >gi|257065271|ref|YP_003144943.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792924|gb|ACV23594.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 272 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V + I+ R G++QE+L + +T Q V ++E G + + ++ VL P Sbjct: 1 MKVSEAIQNARKEAGLTQEQLAAKVYVTRQAVSRWETGESEPSIDMRKLLASVLGVPAVG 60 Query: 73 FFDVSPTVC 81 FD+ Sbjct: 61 LFDLPDAPA 69 >gi|229174292|ref|ZP_04301825.1| Helix-turn-helix domain protein [Bacillus cereus MM3] gi|228609149|gb|EEK66438.1| Helix-turn-helix domain protein [Bacillus cereus MM3] Length = 277 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNENVE 89 >gi|260587052|ref|ZP_05852965.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260542542|gb|EEX23111.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 215 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I R G+SQ+ ++ Q V +E G + + IS+ + + Sbjct: 1 MNIGEQINNLRKKHGLSQDDFANLFNVSRQTVSNWENGKSYPDLEMIIKISDYFKISVDE 60 Query: 73 FFDVSPTVCSDISSEEN 89 I +E+ Sbjct: 61 LLRNDVQSEEKIDNEKK 77 >gi|319762972|ref|YP_004126909.1| hypothetical protein Alide_2286 [Alicycliphilus denitrificans BC] gi|330825052|ref|YP_004388355.1| XRE family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117533|gb|ADV00022.1| Protein of unknown function DUF2083,transcriptional regulator [Alicycliphilus denitrificans BC] gi|329310424|gb|AEB84839.1| transcriptional regulator, XRE family [Alicycliphilus denitrificans K601] Length = 478 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 41/123 (33%), Gaps = 2/123 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R G++Q L + L ++ + + E + + L + + F + Sbjct: 2 GAHLKTLREQRGLTQAALAQALKVSPSYLNQIENNQRPLTVNVLLRLQAAFGIDLQQFSE 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S M L R + R ++ L + I ++E++ Sbjct: 62 DSQARQLGQLRSALADM-PGGDQVPLAETRILAEQLPAATR-VLLGLHKRIRAAEERLSV 119 Query: 136 IEE 138 I E Sbjct: 120 IAE 122 >gi|325833460|ref|ZP_08165909.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485384|gb|EGC87853.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 71 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + NVG+R+R R ++QE+L G+ + K E G ++ ++ L Sbjct: 1 MTHATRKNVGQRVRALREESNLTQEQLALMTGVGRSYLAKVEAGNRNATIDFMEKVALGL 60 Query: 67 ESPISFFFDV 76 + F+ Sbjct: 61 GVTLGQLFEG 70 >gi|262281939|ref|ZP_06059708.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262262393|gb|EEY81090.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 210 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 1/98 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MKLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 E++ I++ QL+ + Sbjct: 61 LLKG-IEPVVQKEEEQSIEHRRIASNICYQLSLALAGL 97 >gi|229189224|ref|ZP_04316248.1| hypothetical protein bcere0002_9080 [Bacillus cereus ATCC 10876] gi|228594268|gb|EEK52063.1| hypothetical protein bcere0002_9080 [Bacillus cereus ATCC 10876] Length = 149 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRG 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|327490803|gb|EGF22584.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] Length = 120 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 2/115 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G++Q+++ E GI Q++E G + G L+ ++ I + Sbjct: 4 ERLKELRKEAGLTQKQIAEKFGIKQPNYQQWESGKRKPGEETLKKFADFFNVSIDYLLGK 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + SD + + + L + + +++ +IE + I + K Sbjct: 64 TDNKKSDEINLSE--FEILYRKTSKNLTERQKRDLEEVLKEVLIERQKLIEENNK 116 >gi|229075522|ref|ZP_04208510.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-18] gi|228707618|gb|EEL59803.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-18] Length = 277 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 35/82 (42%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KKI + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKIKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ + Sbjct: 68 VFEVSLDYLLKETAEQSNEKEN 89 >gi|169349918|ref|ZP_02866856.1| hypothetical protein CLOSPI_00658 [Clostridium spiroforme DSM 1552] gi|169293486|gb|EDS75619.1| hypothetical protein CLOSPI_00658 [Clostridium spiroforme DSM 1552] Length = 194 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 30/74 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ R +SQE+L + ++ Q + +E + L +S + + Sbjct: 1 MDIGSQIKKFREQQNISQEELALKIFVSRQTISNWETNKSCPDVKSLITLSNIFNVSLDD 60 Query: 73 FFDVSPTVCSDISS 86 F +I Sbjct: 61 FIRGDIKEMREIIE 74 >gi|160914966|ref|ZP_02077180.1| hypothetical protein EUBDOL_00974 [Eubacterium dolichum DSM 3991] gi|158433506|gb|EDP11795.1| hypothetical protein EUBDOL_00974 [Eubacterium dolichum DSM 3991] Length = 144 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 41/105 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G + + R G+SQE + E LG++ Q + K+E + + ++ + + Sbjct: 1 MNIGNHLMMARKRKGLSQESVAEKLGVSRQTISKWETCETLPDICQAKTLATIYGISLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 V E + + D +L R I + ++ Sbjct: 61 LITFDSDVQELQDIIERTSEELTNKIDWTKLWRKKYPILNEYQKE 105 >gi|90592588|ref|YP_529848.1| putative transcriptional regulator [Lactobacillus phage KC5a] gi|89891917|gb|ABD78790.1| putative transcriptional regulator [Lactobacillus phage KC5a] Length = 117 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 39/107 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++ +LGE +G+ + +YE Q +++ P+ + + Sbjct: 3 NRLKELRHEKNLTLRELGEKVGMRNSTLSQYETNKREPKLDTWQKLADFFNVPVDYLLGI 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 S + + N L++ + Q KI +L+ Sbjct: 63 SKDRSTLTIDDLNAEEQEAYERITDMLSQEYPQTRPEFNWSKIGQLL 109 >gi|313897216|ref|ZP_07830760.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957937|gb|EFR39561.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 212 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +RI+ R + G+SQE+L E G++ Q V K+E + ++ +S+ + Sbjct: 1 MKLAERIQYLRKMKGISQEELAEKAGVSRQAVSKWESDQSTPDVEKIIIMSDYFGVTTDY 60 Query: 73 FFDV 76 Sbjct: 61 ILKG 64 >gi|167755401|ref|ZP_02427528.1| hypothetical protein CLORAM_00915 [Clostridium ramosum DSM 1402] gi|237733631|ref|ZP_04564112.1| SOS-response transcriptional repressor [Mollicutes bacterium D7] gi|167704340|gb|EDS18919.1| hypothetical protein CLORAM_00915 [Clostridium ramosum DSM 1402] gi|229383229|gb|EEO33320.1| SOS-response transcriptional repressor [Coprobacillus sp. D7] Length = 206 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFF 74 G+RI+ R G++QE+LG LG+ + KYE + +Q +SE+ + P S+F Sbjct: 3 GERIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENNRVENLKKDTIQKLSEIFDVPASYFL 62 Query: 75 DVSPTVCSDISSE 87 + + I+ Sbjct: 63 GIDESNQPIITDS 75 >gi|91223886|ref|ZP_01259150.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] gi|269966489|ref|ZP_06180573.1| putative transcriptional regulator [Vibrio alginolyticus 40B] gi|91191378|gb|EAS77643.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] gi|269828946|gb|EEZ83196.1| putative transcriptional regulator [Vibrio alginolyticus 40B] Length = 185 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 30/73 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +GK I R G+SQ +L E GIT + E G S LQ I V +S Sbjct: 3 NQEIGKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLS 62 Query: 72 FFFDVSPTVCSDI 84 FF ++ Sbjct: 63 EFFTFEQPSNDEV 75 >gi|229191715|ref|ZP_04318693.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 10876] gi|228591761|gb|EEK49602.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 10876] Length = 277 Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 34/82 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFRLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ + Sbjct: 68 VFEVSLDYLLKETAEQSNEKEN 89 >gi|297587580|ref|ZP_06946224.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] gi|297574269|gb|EFH92989.1| conserved hypothetical protein [Finegoldia magna ATCC 53516] Length = 327 Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 2/103 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I L R ++QE+L E LG++ Q V K+E G + +++ +S+V + Sbjct: 1 MILSDKIILLRKKNNLTQEELAEKLGVSRQSVSKWEMGNSIPDINKIIQLSDVFGVKTDY 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 ++ SD + EE IS D + + + Sbjct: 61 LLKDEIDDIEYSDDTVEELETKKTISVEDANDFMSAYEEYSND 103 >gi|225377956|ref|ZP_03755177.1| hypothetical protein ROSEINA2194_03616 [Roseburia inulinivorans DSM 16841] gi|225210207|gb|EEG92561.1| hypothetical protein ROSEINA2194_03616 [Roseburia inulinivorans DSM 16841] Length = 339 Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R GMSQ+ + + LG+T Q V K+E + + L I+ + I F Sbjct: 4 IGNKIKELRRSKGMSQKDIADKLGVTSQAVSKWENDGSLPEMTMLPDIASLFGIQIDDLF 63 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 + S + ++ ++ Sbjct: 64 EYSTEKRYESIEKKLQYGRVMTN 86 >gi|150389675|ref|YP_001319724.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949537|gb|ABR48065.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 197 Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 31/77 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK I R ++Q+ + + LGI + V K+E G+ S +S + + I Sbjct: 4 VKIGKLIAKLRKEKKLTQKNIADALGIQNKTVSKWECGLGCPDLSLWPELSAIFDIDIKQ 63 Query: 73 FFDVSPTVCSDISSEEN 89 + T + Sbjct: 64 MMEGEITPNKPDGGNID 80 >gi|237786506|ref|YP_002907211.1| HTH_3 family transcriptional regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237759418|gb|ACR18668.1| transcriptional regulator, HTH_3 family [Corynebacterium kroppenstedtii DSM 44385] Length = 498 Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 8/128 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R++ R +SQ L LG++ V + E + +S L+ I+ V +F Sbjct: 14 VFVGTRLKQLRKERELSQATLAHALGLSASYVNQIENDSRPLTSSVLRKITHVFGIDEAF 73 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F + + + T +Q + EL R++V ++ Sbjct: 74 FSREDDSRLVAEVHDVTLDREVCPTSIDVQEVADLVHTHP--------ELARALVDIHRR 125 Query: 133 YRTIEEEC 140 YR + ++ Sbjct: 126 YRNVSDKL 133 >gi|261366423|ref|ZP_05979306.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282571685|gb|EFB77220.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 200 Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + +G+RI+ R ++Q +L + LG + + VQ YE G +R+ + I+ L Sbjct: 2 NLTNEQIGQRIKEVRTEKNITQTQLAKFLGKSLRTVQSYESGESRIFFDTVCSIANFLGV 61 Query: 69 PISFFFDVSPTVCS 82 S+ Sbjct: 62 TPSYLLGFEEPQLQ 75 >gi|116617221|ref|YP_817592.1| hypothetical protein LEUM_0067 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096068|gb|ABJ61219.1| hypothetical protein LEUM_0067 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 240 Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R G++Q++ E L I+FQ V +E+ + I E + P+ F Sbjct: 1 MEIGNKIKALRKKNGLTQQQFAEKLYISFQSVSNWERHKGHPTTEMMLLIIEKFDLPLDF 60 Query: 73 FFDVSPTVCSDISSE 87 F C D E Sbjct: 61 FIIPPTNSCEDNDEE 75 >gi|260855372|ref|YP_003229263.1| putative phage repressor protein [Escherichia coli O26:H11 str. 11368] gi|257754021|dbj|BAI25523.1| predicted phage repressor protein [Escherichia coli O26:H11 str. 11368] Length = 135 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 8/131 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G+RIR RR L +Q L + L I+ V ++E+ + L +S+VL+ + Sbjct: 5 NLTIGERIRYRRKNLKYTQRSLAKVLKISHVSVSQWERDDSEPTGKNLFALSKVLQCSPT 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + EE +P +L F + + + ++ E + + K Sbjct: 65 WILFGDEDKQPSPPIEEPV----ALSPKEHELLELFNALPESEQDAQLTE----MRARVK 116 Query: 132 KYRTIEEECMV 142 + + EE + Sbjct: 117 NFNKLFEELLK 127 >gi|188026190|ref|ZP_02961203.2| hypothetical protein PROSTU_03206 [Providencia stuartii ATCC 25827] gi|188021969|gb|EDU60009.1| hypothetical protein PROSTU_03206 [Providencia stuartii ATCC 25827] Length = 99 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 4/99 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N K P V VG++I+ R G + +L + + I+ QQ+ +YE+GVNR+ L Sbjct: 1 MFMNTKYP--VACAVGQKIKSLRKSQGYTVFQLAKEIDISEQQLFRYERGVNRIDIDCLV 58 Query: 61 HISEVLESPISFFFDV--SPTVCSDISSEENNVMDFIST 97 + +VL+ + FF ++ E D I + Sbjct: 59 RVLKVLDVNMGEFFSEILQDDTHANEDKESKGFDDSIYS 97 >gi|149202181|ref|ZP_01879154.1| hypothetical protein RTM1035_12678 [Roseovarius sp. TM1035] gi|149144279|gb|EDM32310.1| hypothetical protein RTM1035_12678 [Roseovarius sp. TM1035] Length = 468 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 8/127 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G +Q + L ++ + E + L I++ Sbjct: 6 IGPRLRQLRRERGQTQADMARKLDVSPSYINLLENNQRSLSVQMLMSIADAYAVDWRDLT 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 F LQ R + D R +++L + + YR Sbjct: 66 RDETARRVADLRHAVRDPVFALDRPDLQELRGAV---DHAPR--LVDLFLELHGA---YR 117 Query: 135 TIEEECM 141 T E+ + Sbjct: 118 TALEKIL 124 >gi|322390694|ref|ZP_08064207.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321142600|gb|EFX38065.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 151 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 30/78 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R ++Q ++ E + + ++E G + ++++ ++ + Sbjct: 9 GDRLRELRKSKKLTQVQVSEMIDVQQGTYSRWENGTLEPNLEAVVKLAKLFDTTTDYLLG 68 Query: 76 VSPTVCSDISSEENNVMD 93 + D+ +D Sbjct: 69 KTIYSTLDVVPPPITRID 86 >gi|302390193|ref|YP_003826014.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302200821|gb|ADL08391.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 121 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+GKRIR R+ ++QE+LGE + + + + E+G L I++ L + + Sbjct: 8 KNIGKRIRQIRLQRDLTQEELGERANLHYSYIGQVERGDKLPSLKTLSKIAKALNVSLDY 67 Query: 73 FFDVSPTVCSDISSEEN 89 + T + +E Sbjct: 68 VLEDPATYEAQPDTEAA 84 >gi|225570227|ref|ZP_03779252.1| hypothetical protein CLOHYLEM_06323 [Clostridium hylemonae DSM 15053] gi|225161022|gb|EEG73641.1| hypothetical protein CLOHYLEM_06323 [Clostridium hylemonae DSM 15053] Length = 195 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 1/93 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI+ R +SQE+L + ++ Q V +E + L +S V + Sbjct: 1 MDIGLRIKKLREQQKISQEELALKIFVSRQTVSNWETNKSCPDVKSLIILSNVFNVSLDS 60 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + + + + +S +L Sbjct: 61 FIKEDIKEMREIVEKAAIKKFNMMSVVFLAELT 93 >gi|296166113|ref|ZP_06848558.1| regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898522|gb|EFG78083.1| regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 191 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P+ +D+ V +R+R RM GM+ +++G GI + + E G R+ L Sbjct: 1 MQAKTAPD-IDLQVRRRLRELRMQRGMTLQEVGAIAGIDISTLSRLESGKRRLALDHLPR 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVM 92 ++ L + + Sbjct: 60 LARALSVSTDELLQPAEANDPRVRGAARTHH 90 >gi|218510506|ref|ZP_03508384.1| XRE family transcriptional regulator [Rhizobium etli Brasil 5] Length = 468 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 8/132 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R+R R LG++Q + L ++ V E V A L ++ + +S Sbjct: 9 VYLGPRLRRLRKDLGLTQAMMASDLEVSPSYVALMEGNQRPVTAELLLRLARTYKIDMSV 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKIIELV-----RSI 126 D S + ++ + D I + + + ++ L + Sbjct: 69 LADDS--TPELLGRLQSTIKDPIFADIEISPLEAADVLSSFPGFAEAMLRLYTAYKEEQL 126 Query: 127 VSSEKKYRTIEE 138 ++++ ++ Sbjct: 127 ALADQRQVALDR 138 >gi|325678585|ref|ZP_08158195.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324109635|gb|EGC03841.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 220 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 26/74 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K IR R G SQE L E ++ Q V +E L +S++ + Sbjct: 28 KTIRKLRTEKGWSQEMLAEKAYVSRQTVSNWENEKCYPDVHSLLILSDLFGVSLDELIKG 87 Query: 77 SPTVCSDISSEENN 90 +E++ Sbjct: 88 DVETMKKTVNEKDA 101 >gi|295101224|emb|CBK98769.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Faecalibacterium prausnitzii L2-6] Length = 272 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 2/98 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +D GK I R G++Q +L E L IT + V K+E G AS + + +L Sbjct: 2 NQIDT--GKFIAGCRKEKGLTQAQLAEKLNITDRAVSKWETGKCMPDASIMLELCNILGV 59 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 ++ ++ + N + + D +N+ Sbjct: 60 TVNELLSGERIEMNNYEEKVNENLIELKRKDENNMNKN 97 >gi|227832086|ref|YP_002833793.1| putative transcriptional regulator, MerR family [Corynebacterium aurimucosum ATCC 700975] gi|262184059|ref|ZP_06043480.1| putative transcriptional regulator, MerR family protein [Corynebacterium aurimucosum ATCC 700975] gi|227453102|gb|ACP31855.1| putative transcriptional regulator, MerR family [Corynebacterium aurimucosum ATCC 700975] Length = 468 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 10/128 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+E +FF Sbjct: 5 YVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLKITEAFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + +P L +L+ + R++V ++ Sbjct: 65 SRDDDSRLLAEIQDVVQDQEICPSPVELQELSELVYNHPT---------VARTLVDIHRR 115 Query: 133 YRTIEEEC 140 YR I ++ Sbjct: 116 YRNIRDKL 123 >gi|296533794|ref|ZP_06896337.1| cro/CI family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296265880|gb|EFH11962.1| cro/CI family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 468 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 3/125 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R G++Q+ L LGI+ + E V A+ L + L+ ++ Sbjct: 6 IGRTIRRLRQEQGLTQQALASRLGISASYLNLIEHDQRGVTAALLIKLGHTLQVDLAALS 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI--VSSEKK 132 E + R + ++ L R++ + Sbjct: 66 GREEQQLESSLREVLADPLLGLDETPEEEIRALAG-SAPNAARAMLALYRALRVAREDAS 124 Query: 133 YRTIE 137 + Sbjct: 125 GIALP 129 >gi|255280080|ref|ZP_05344635.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255269171|gb|EET62376.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 137 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 52/137 (37%), Gaps = 5/137 (3%) Query: 1 MVGNKKIPN--PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M +K+ + P + G + R G+SQ ++ LG +E G +V + Sbjct: 1 MGRERKVESRGPEYVEFGNNMAKLRKARGLSQAEIAAALGTLQSTYAGWEAGTRKVQLTT 60 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + +S+ I ++ SE+++ + + R K++++ Sbjct: 61 MLQLSKFFGVSIDVLIGTQ--KFVNVPSEKSSCELNDKEKKLVDIYRELNTAGKQKLQER 118 Query: 119 IIELVRSIVSSEKKYRT 135 EL+ + +EK+ Sbjct: 119 ADELLE-LGYTEKRDIE 134 >gi|56709057|ref|YP_165102.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56680742|gb|AAV97407.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 188 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+R+R+ R G+SQ L + GI + E G S L+ + + +S Sbjct: 8 DAELGQRLRVIRERAGLSQRALAKRSGIPNSTISLIEGGKINPSVSTLRRVLGGIPIGLS 67 Query: 72 FFFDVSPTVCSDI 84 FF P Sbjct: 68 DFFAFEPEQEKAS 80 >gi|317488862|ref|ZP_07947392.1| hypothetical protein HMPREF1023_01091 [Eggerthella sp. 1_3_56FAA] gi|316911936|gb|EFV33515.1| hypothetical protein HMPREF1023_01091 [Eggerthella sp. 1_3_56FAA] Length = 176 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 31/89 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+++ R GMSQ+++ LG+T Q V +E + ++ + + Sbjct: 1 MVGEKLMKLRKKRGMSQQEVASALGVTRQTVSNWECDQGAPSLDKAADLARLCGVSLDDL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQ 102 V + + L+ Sbjct: 61 VADEVEVVVADPDQAAGKPRDLHVLRHLE 89 >gi|239627852|ref|ZP_04670883.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239517998|gb|EEQ57864.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 146 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 60/126 (47%), Gaps = 1/126 (0%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D VG RI+ RR L ++Q+ + GI+ + + E+G + L +S++L++ Sbjct: 2 DNIDKMVGIRIKTRRKELNLTQKDVYAATGISNGNLSEIERGNVLPSSKALVSLSKLLQT 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS-IV 127 I + ++ + S + +N+ + + +L + ++ ++ + + +R+ + Sbjct: 62 SIDWILTGEASIIDNSSPKTSNIEYSLKLNESEELIIFMLRSLPLEEQLDVKNYLRAKVA 121 Query: 128 SSEKKY 133 EK Sbjct: 122 KCEKSE 127 >gi|229162462|ref|ZP_04290423.1| Helix-turn-helix domain protein [Bacillus cereus R309803] gi|228620941|gb|EEK77806.1| Helix-turn-helix domain protein [Bacillus cereus R309803] Length = 277 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 34/82 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q + K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAISKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ + Sbjct: 68 VFEVSLDYLLKETVEQSNEKEN 89 >gi|325663144|ref|ZP_08151594.1| hypothetical protein HMPREF0490_02335 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470598|gb|EGC73828.1| hypothetical protein HMPREF0490_02335 [Lachnospiraceae bacterium 4_1_37FAA] Length = 242 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 61/132 (46%), Gaps = 15/132 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R++ RR++L +S++KL E IT Q + YE G++ L + + LE ++ Sbjct: 1 MSLGDRLKERRVMLNLSRKKLSEITYITPQALANYENGISTPKFEILVSLFQSLECDANY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + N DF T + L + Q++D + + +L+ +++ Sbjct: 61 LYQD--------YLPANLQTDFNITKNEQDLIEKYRQLND--HGKHVAKLI-----IDEE 105 Query: 133 YRTIEEECMVEQ 144 Y + E + ++ Sbjct: 106 YARMLEGLLRKK 117 >gi|71278291|ref|YP_271323.1| putative transcriptional regulator [Colwellia psychrerythraea 34H] gi|71144031|gb|AAZ24504.1| putative transcriptional regulator [Colwellia psychrerythraea 34H] Length = 180 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 6/113 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VGKR++ R + G+SQ +L + +G+T + E+ S L+ I E + ++ Sbjct: 1 MDVGKRLKEVREMYGLSQRELAKRVGLTNSTISMIERDAVSPSISSLKKILEGVSLTVTE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 FF + S + +++ ++D S L L + K+ L+ Sbjct: 61 FFTLEIPTESQVVFKKDTLVDVGSDGVELHLV------GTPQPDSKLAFLIER 107 >gi|320321358|gb|EFW77485.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 130 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 11/113 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI+ R ++QE L E + + +YE+G ++ +++VL + Sbjct: 26 KIIGTRIKALRKHRSLTQEALAEAMACETATIGRYERGEFSPSVEQIAKMADVLGVSPAE 85 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 S + + + ++ + ID+ + + I++L S Sbjct: 86 IIPSSYEISRQELVDLREKLFTVA-----------LCIDNPEKLRVILDLAES 127 >gi|84501262|ref|ZP_00999467.1| transcriptional regulator, XRE family with cupin sensor domain [Oceanicola batsensis HTCC2597] gi|84390553|gb|EAQ03041.1| transcriptional regulator, XRE family with cupin sensor domain [Oceanicola batsensis HTCC2597] Length = 213 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 31/81 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RIR R G++ + + + G+ + K E+G+ R ++ L ++ Sbjct: 22 ELGQRIRQLREARGLTLQTIADRSGLAISTISKIERGLMAPTYDRFSGLARGLGVDVTHL 81 Query: 74 FDVSPTVCSDISSEENNVMDF 94 F + +F Sbjct: 82 FSPGGRRFEAGTVALARAGEF 102 >gi|325979442|ref|YP_004289158.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325179370|emb|CBZ49414.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 119 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 15/124 (12%), Positives = 51/124 (41%), Gaps = 8/124 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G++Q+++ + L + +EKG+ ++ ++E+ + Sbjct: 4 ERLKKLRKEAGLTQQQVAKKLRVGQNSYSNWEKGIRTPIFPTIEKLAELFNVSTDYLTGK 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + ++ + + LN Q + ++++ + E ++ K+ + Sbjct: 64 TDIKEKNENNSIETTANVLFRTTVKDLNLTPEQ--EEQLKKDLNEFIK------KRRKAF 115 Query: 137 EEEC 140 E++ Sbjct: 116 EDDL 119 >gi|56421725|ref|YP_149043.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|56381567|dbj|BAD77475.1| transcriptional regulator [Geobacillus kaustophilus HTA426] Length = 135 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 44/127 (34%), Gaps = 6/127 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ R +QE+L E L ++ Q+ K+E G L+ + ++ + F Sbjct: 4 LGETLKQLRKQRRWTQEELAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFDVSADFLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + L + + ++ + + ++ K R Sbjct: 64 GGETRQRELLREVTDIYGT--ADVHETVLAALDYLLHNQEMSEAVY----ALAKLPDKKR 117 Query: 135 TIEEECM 141 E + Sbjct: 118 KHVETMI 124 >gi|37528130|ref|NP_931475.1| hypothetical protein plu4299 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787567|emb|CAE16671.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 78 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 33/77 (42%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN + G+R+R RM GMSQE + G+ + E+GV + I+ Sbjct: 2 KKPNTIKSIFGQRVRYIRMASGMSQEAFADKCGLDRTYISGIERGVRNPTLEVINVIASG 61 Query: 66 LESPISFFFDVSPTVCS 82 L+ + FD S Sbjct: 62 LQIELKDLFDFDAEKKS 78 >gi|313902610|ref|ZP_07836010.1| transcriptional regulator of molybdate metabolism, XRE family [Thermaerobacter subterraneus DSM 13965] gi|313467176|gb|EFR62690.1| transcriptional regulator of molybdate metabolism, XRE family [Thermaerobacter subterraneus DSM 13965] Length = 456 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V R+R R LG+SQ +L G++ Q + E G + ++ L + F Sbjct: 55 VASRLREARRRLGLSQRELAVRAGVSRQAIGAIEAGRMTPSLAVAMRLARALGCRVEDLF 114 Query: 75 DVSPTVCSDISS 86 + + Sbjct: 115 RLDEPAPEMVVE 126 >gi|296450909|ref|ZP_06892658.1| helix-turn-helix domain protein [Clostridium difficile NAP08] gi|296878611|ref|ZP_06902616.1| helix-turn-helix domain protein [Clostridium difficile NAP07] gi|296260281|gb|EFH07127.1| helix-turn-helix domain protein [Clostridium difficile NAP08] gi|296430418|gb|EFH16260.1| helix-turn-helix domain protein [Clostridium difficile NAP07] Length = 258 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I R G+SQE L E +G T Q + K+E +L +S + E + Sbjct: 1 MSLGEKIFKLRKEKGISQEALAEQIGTTRQAISKWENNQGFPETEKLLQLSNIFEVSTDY 60 Query: 73 FFDVSPTVCSDISS 86 V + Sbjct: 61 LLKDEKNVKNSEER 74 >gi|183598411|ref|ZP_02959904.1| hypothetical protein PROSTU_01807 [Providencia stuartii ATCC 25827] gi|188020590|gb|EDU58630.1| hypothetical protein PROSTU_01807 [Providencia stuartii ATCC 25827] Length = 76 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M GN P +I VGK+I+ R + ++ E+LG +G++ QQ+ +YE GVN + L Sbjct: 1 MSGNIIKPT-FNIIVGKKIKRYRKEMNLTAEELGRYIGVSQQQISRYESGVNHINIDFLS 59 Query: 61 HISEVLESPISFFF 74 +SE+ + PI F Sbjct: 60 QLSELFKVPIQVFL 73 >gi|163815391|ref|ZP_02206766.1| hypothetical protein COPEUT_01556 [Coprococcus eutactus ATCC 27759] gi|158449365|gb|EDP26360.1| hypothetical protein COPEUT_01556 [Coprococcus eutactus ATCC 27759] Length = 172 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K+ +D + +G +R R GM+QE++ G++ + V ++E G + L ++ Sbjct: 8 KEKTEMIDQVKIGNFLRKLRKEKGMTQEEIATKFGVSSRSVSRWENGNTMPDLAILVELA 67 Query: 64 EVLESPISFFFDVSPTVCS 82 + + I D + Sbjct: 68 DYYDVDIREIIDGERKSEN 86 >gi|322376841|ref|ZP_08051334.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] gi|321282648|gb|EFX59655.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] Length = 288 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 1/98 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ RR L MSQ +L E + Q+ + E G GA L +S+ L+ I +FF+ Sbjct: 8 RLKNRRKELKMSQRELAEGI-CKQGQISRLENGEFTPGADFLYALSKKLKVSIDYFFNEQ 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 D SE + T + +Y +++ VKV Sbjct: 67 IVEEIDELSEFKKLAQTFITNRNYESLKYIYELESVKV 104 >gi|295094125|emb|CBK83216.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 242 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R G++QE+ E +G++ Q V K+E+ RL I E+L+ + Sbjct: 4 IGSRIQEYRKKAGLNQEEFAEKMGVSRQAVSKWERDKAYPDLDRLVCICEILDVQVGELI 63 Query: 75 DVSPTVCSDISS 86 Sbjct: 64 YGKGDEPEAPEE 75 >gi|291279912|ref|YP_003496747.1| XRE family transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290754614|dbj|BAI80991.1| transcriptional regulator, XRE family [Deferribacter desulfuricans SSM1] Length = 178 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 4/108 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R LGM+ E + + G T + + E G N + L+ I L IS F+ Sbjct: 4 GAKLREIRKRLGMTLEDVSQKTGFTKSFISQIENGKNSPSIASLKKICFALGITISELFE 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 ++ S+ + + L + ++ + K+ I+E+ Sbjct: 64 DE----RNVVSKFSYDDYKVLKNKNLDIYFLASKLVNRKLEPLILEMH 107 >gi|224541898|ref|ZP_03682437.1| hypothetical protein CATMIT_01071 [Catenibacterium mitsuokai DSM 15897] gi|224525132|gb|EEF94237.1| hypothetical protein CATMIT_01071 [Catenibacterium mitsuokai DSM 15897] Length = 212 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 11/86 (12%), Positives = 30/86 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R G+ Q++LGE +G++ + V +E +Q +++ + Sbjct: 6 GTNVKQLREKRGIDQKELGEIVGVSDKTVSSWEINRTEPKMGIVQQLADYFGVSTDYLIK 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL 101 + + + + Sbjct: 66 GNHDDAIYENVNIDYTRVPLYDSICC 91 >gi|326692332|ref|ZP_08229337.1| transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 248 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R LG++Q+ + L I++Q V +E+ + A + I E P++ Sbjct: 1 MAIGNQIKALRKSLGLTQQTFADKLFISYQSVSNWERAKSHPTAEMMLTIIETFHLPLN- 59 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 FF S D+ E+ + FI + Sbjct: 60 FFMPSDQNSQDLDDEQLILAAFIKS 84 >gi|308273674|emb|CBX30276.1| hypothetical protein N47_D30850 [uncultured Desulfobacterium sp.] Length = 433 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K+ +D +G R++ R G SQ +L + +G+T + + E L I+ Sbjct: 245 EKRTQTQLD--LGTRLKEIRSKRGFSQTELAKLIGVTSSTISQIESNQIYPSLPALIKIA 302 Query: 64 EVLESPISFFFDVSPTVCSDISSEEN 89 E L IS FF TV + + Sbjct: 303 ETLSVKISSFFGELDTVSEQVVFSPS 328 >gi|308071047|ref|YP_003872652.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305860326|gb|ADM72114.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 129 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 42/98 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R + ++QE+L E T + K E+G V L+ I+E L + + FF Sbjct: 7 IGTKIRQFRKLRDITQEQLAEASDSTGSYIGKLERGEVNVQIKTLEKIAEALNTNVFAFF 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + + + +S + N+ + + + Sbjct: 67 NFNSYEELKSQPWIWGCIHILSQQSEAEQNKAYRILKE 104 >gi|297531429|ref|YP_003672704.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|297254681|gb|ADI28127.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] Length = 135 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 43/127 (33%), Gaps = 6/127 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ R +QE+L E L ++ Q+ K+E G L+ + ++ F Sbjct: 4 LGETLKQLRKQRRWTQEQLAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFNISADFLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + L + + ++ + + ++ K R Sbjct: 64 GGETRQRELLREVTDMYGT--ADVHETVLAALDYLLHNQEMSEAVY----ALAKLPDKKR 117 Query: 135 TIEEECM 141 E + Sbjct: 118 KHVETMI 124 >gi|227432755|ref|ZP_03914721.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351491|gb|EEJ41751.1| conserved hypothetical protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 256 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R G++Q++ E L I+FQ V +E+ + I E + P+ F Sbjct: 17 MEIGNKIKALRKKNGLTQQQFAEKLYISFQSVSNWERHKGYPTTEMMLLIIEKFDLPLDF 76 Query: 73 FFDVSPTVCSDISSE 87 F C D E Sbjct: 77 FIIPPTNSCEDNDEE 91 >gi|255283010|ref|ZP_05347565.1| transcriptional regulator, Cro/CI family [Bryantella formatexigens DSM 14469] gi|255266549|gb|EET59754.1| transcriptional regulator, Cro/CI family [Bryantella formatexigens DSM 14469] Length = 185 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 36/79 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V+ +GKRIR R G++Q++L + +T + + E+G L + E L + Sbjct: 4 DYVNAQIGKRIRDLRNRKGLTQQELADRAELTKGFISQLERGQVSPSVVTLLDLIECLGT 63 Query: 69 PISFFFDVSPTVCSDISSE 87 S FF + + E Sbjct: 64 TASDFFKEAVEEQIVFTEE 82 >gi|291279081|ref|YP_003495916.1| transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290753783|dbj|BAI80160.1| transcriptional regulator [Deferribacter desulfuricans SSM1] Length = 196 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 33/68 (48%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 DIN+G+RIR R GM+ + + G + + + E V + L I+ VL Sbjct: 3 DFDINIGERIRKLRNDRGMTLQDVANLTGFSKALISQIENNVVMPPITTLAKIANVLNVK 62 Query: 70 ISFFFDVS 77 +++FF+ Sbjct: 63 MTYFFEEE 70 >gi|254488981|ref|ZP_05102186.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] gi|214045850|gb|EEB86488.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] Length = 483 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 45/128 (35%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R+ L +Q+ LG++ + + E V + + ++ ++ Sbjct: 26 GAKLREVRLRLNHTQKDFAAKLGVSLPYLNQMENNNRPVSTTVVLALASEFGMDVTELSS 85 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E + F L + + + + I+L +S + ++ + Sbjct: 86 GDGERLISDMREVLSDPLFEGDKLPLADLQLAAS-NAPGLARAFIKLHQSHRQTHERLAS 144 Query: 136 IEEECMVE 143 ++E E Sbjct: 145 LDEALGRE 152 >gi|222530393|ref|YP_002574275.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457240|gb|ACM61502.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 77 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VGK++R R G+SQ++L + G+ + E+ ++ ++ L I F Sbjct: 1 MVGKKLRKLRTQKGLSQQQLAKIAGVPQSTIWYIERENRNPTIKTMKRLATALGVSIEEF 60 Query: 74 FDVSPTVCSDISSEENN 90 D S++N+ Sbjct: 61 LDSETKEMITNGSQKND 77 >gi|302386036|ref|YP_003821858.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302196664|gb|ADL04235.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 204 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 38/94 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R ++QE+L E L ++ V K+E G L+ IS+V I Sbjct: 5 EKLQQLRKQNNLTQEQLAEQLYVSRTAVSKWESGKGYPNIESLKCISKVFAVSIDELLSG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + + S +N+ S G+ F I Sbjct: 65 NELITLAQSENRSNISKLYSLMYGILDVMAFAFI 98 >gi|160876601|ref|YP_001555917.1| putative phage repressor [Shewanella baltica OS195] gi|160862123|gb|ABX50657.1| putative phage repressor [Shewanella baltica OS195] gi|315268797|gb|ADT95650.1| putative phage repressor [Shewanella baltica OS678] Length = 229 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ RR LG +Q + + +G+T V +E G L +++ L + Sbjct: 4 ERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYLLFG 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 + + ++E + + L Sbjct: 64 NKETKPESNAEWAGGFEIWDSDTPL 88 >gi|153001880|ref|YP_001367561.1| putative phage repressor [Shewanella baltica OS185] gi|151366498|gb|ABS09498.1| putative phage repressor [Shewanella baltica OS185] Length = 229 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ RR LG +Q + + +G+T V +E G L +++ L + Sbjct: 4 ERIKQRRKELGFTQPAIAKKIGLTKATVSLWESGSTSPKGENLHALAKALSCSPEYLLFG 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 + + ++E + + L Sbjct: 64 NKETKPESNAEWAGGFEIWDSDTPL 88 >gi|84515321|ref|ZP_01002683.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] gi|84510604|gb|EAQ07059.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] Length = 466 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 46/128 (35%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L M+Q+ + LG++ + + E V + + +++ ++ Sbjct: 9 GAKLRELRGRLAMTQKAFADKLGVSLPYLNQMENNNRPVSTTVVLGLAQEFGFDVTELQS 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F + L R + + + ++L R + ++ + Sbjct: 69 GDEARLVGDLREALADPVFTGSAPALADLRLVAA-NAPALARAFLDLHRGYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|58699142|ref|ZP_00373967.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58534342|gb|EAL58516.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 312 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 16/130 (12%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GK+I+ R++ +Q+ L E + T ++ YE+G + +L I+E L Sbjct: 167 SIYYQIGKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIAETLSIS 226 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVS 128 I+ + L + + +I+ ++R +I+ L SI Sbjct: 227 ITDLLIEEDEIVESELP---------------DLIKEYKKIESQELRYALIKSLFESIQI 271 Query: 129 SEKKYRTIEE 138 E+K + E+ Sbjct: 272 CEEKVKRAEK 281 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 10/129 (7%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+EVL Sbjct: 14 SIRYKIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVG 73 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I VS + EE L L R + I+D ++R+ L + Sbjct: 74 IIDLIPVSSEKICLKNEEEE----------ILNLVRKYKTINDQELRKVFYLLTKFTRVG 123 Query: 130 EKKYRTIEE 138 EK + E+ Sbjct: 124 EKSSKKAEK 132 >gi|332523977|ref|ZP_08400229.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332315241|gb|EGJ28226.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 194 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 30/77 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK++ R G SQE L E + ++ Q + +E + L ++ + + Sbjct: 1 MELGKKLSSCRKKAGFSQEDLAEKIYVSRQTISNWENDKSYPDIHSLIALANLFNLSLDQ 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + ++ Sbjct: 61 LVEGDIDEMKKLVQSDD 77 >gi|125718510|ref|YP_001035643.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125498427|gb|ABN45093.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 197 Score = 54.1 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 34/79 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK+I+ R +SQ+ L E + ++ Q + +E+G L +S+V E + Sbjct: 1 MQVGKQIQHYRKEKNLSQDDLAEIIFVSRQSISNWERGATYPDIQNLLLLSKVFEVSLDK 60 Query: 73 FFDVSPTVCSDISSEENNV 91 I ++ + Sbjct: 61 LVKGDLETMKQIIHDQEFM 79 >gi|253754652|ref|YP_003027792.1| DNA-binding protein [Streptococcus suis BM407] gi|251817116|emb|CAZ54837.1| putative DNA-binding protein [Streptococcus suis BM407] Length = 119 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 40/95 (42%), Gaps = 2/95 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + ++IR+ R +SQ++L E L I+ Q V ++E G +L ++E+ + + Sbjct: 2 KQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSEWENGEATPDIDKLVQLAEIFGVSLDY 61 Query: 73 FFDVSPTVCSDISSEENNV--MDFISTPDGLQLNR 105 + + + +F++ L R Sbjct: 62 LVLGKEPEKEIVVEQRGKMNGWEFLNEESKRPLTR 96 >gi|330863911|emb|CBX74000.1| uncharacterized HTH-type transcriptional regulator ydcN [Yersinia enterocolitica W22703] Length = 206 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 1/96 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G +++ R G S + E G++ + + E+G + + L I+ L S Sbjct: 24 RHIGNQLKNVRRERGWSLNQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSQ 83 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 F + +P S + F S G+++ F Sbjct: 84 FLE-TPPAQSAALHRHGLLTTFNSETSGMRVVPLFP 118 >gi|332161859|ref|YP_004298436.1| putative DNA-binding protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666089|gb|ADZ42733.1| putative DNA-binding protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 188 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 1/96 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G +++ R G S + E G++ + + E+G + + L I+ L S Sbjct: 6 RHIGNQLKNVRRERGWSLNQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSQ 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 F + +P S + F S G+++ F Sbjct: 66 FLE-TPPAQSAALHRHGLLTTFNSETSGMRVVPLFP 100 >gi|268608708|ref|ZP_06142435.1| hypothetical protein RflaF_04317 [Ruminococcus flavefaciens FD-1] Length = 322 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 45/104 (43%), Gaps = 4/104 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R GMSQE+L E LG++ Q V K+E + +R+ IS++ + + Sbjct: 6 KLIELRKKSGMSQEELAEKLGVSRQSVSKWEGAQSTPDLNRILEISKIFDVSTDYLLKDE 65 Query: 78 PTVCSDISS-EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +IS ++ + ++ F+ + ++ ++ Sbjct: 66 IEAGKEISEKSISDETEPPLRRVSMEEANNFL---NANGKRAVL 106 >gi|323464795|gb|ADX76948.1| transcriptional regulator, Cro/CI family [Staphylococcus pseudintermedius ED99] Length = 179 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R + ++QE+LGE ++ + + E +I EVL + Sbjct: 1 MEIGQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNMETFLNILEVLGTSPRD 60 Query: 73 FFDV 76 FFD Sbjct: 61 FFDD 64 >gi|169633695|ref|YP_001707431.1| putative transcriptional regulator [Acinetobacter baumannii SDF] gi|169152487|emb|CAP01455.1| putative transcriptional regulator [Acinetobacter baumannii] Length = 197 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 4/92 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++I + RIR R+ G + + L ++ + E+G A L+ ++ LE Sbjct: 2 DDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEV 61 Query: 69 PISFFFDVSPTVCSDIS----SEENNVMDFIS 96 P++ F S +E+ D + Sbjct: 62 PLTQIFTNEAGNSSSQPLICRNEQAEWRDPET 93 >gi|270208634|ref|YP_003329405.1| predicted transcriptional regulator [Sinorhizobium meliloti] gi|76880908|gb|ABA56078.1| predicted transcriptional regulator [Sinorhizobium meliloti] Length = 194 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 36/110 (32%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R+ + +L G++ + K E+G L I+ V + F Sbjct: 14 AIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFGVGLDHF 73 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F+ + + S P F +D +++ Sbjct: 74 FNADKEEPLIAVVRKQQRLKLPSPPGEKHPAFLFESLDYPASDRRMEAFY 123 >gi|332364707|gb|EGJ42476.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 205 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ + + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFDVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 E++ I++ QL+ F Sbjct: 61 LLKG-IEPVVQKEEEQSIKYRRIASNICYQLSLGF 94 >gi|323353424|ref|ZP_08087957.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322121370|gb|EFX93133.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 205 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ + + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFDVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 E++ I++ QL+ F Sbjct: 61 LLKG-IEPVVQKEEEQSIKYRRIASNICYQLSLGF 94 >gi|260843874|ref|YP_003221652.1| putative phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|257759021|dbj|BAI30518.1| putative phage repressor protein CI [Escherichia coli O103:H2 str. 12009] gi|323186644|gb|EFZ71972.1| HTH-type transcriptional regulator dicA [Escherichia coli RN587/1] Length = 135 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ RR L +SQ LG+ + + + ++E+ + RL +S+ L+ ++ Sbjct: 7 GARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQPAGKRLFALSQALQCSPTWLLF 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 N I T D +L + F + D + + L+ + + + + Sbjct: 67 GDEDKQPG--EPIPNNQPAILTEDQKELLQLFDALPDSEQK----ALLSEMRARVENFNK 120 Query: 136 IEEECMV 142 + EE + Sbjct: 121 LFEELLK 127 >gi|223983505|ref|ZP_03633690.1| hypothetical protein HOLDEFILI_00971 [Holdemania filiformis DSM 12042] gi|223964500|gb|EEF68827.1| hypothetical protein HOLDEFILI_00971 [Holdemania filiformis DSM 12042] Length = 270 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 12/124 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 ++++ RR +G SQE+L L ++ Q V K+E G +L +SE+L + Sbjct: 5 QKLQKRRKEVGFSQEQLAFELNVSRQAVSKWESGQGYPEVEKLIQLSELLGISLDELMKE 64 Query: 75 --DVSPTVCSDISSEENNVMDFISTPDGLQ--------LNRYFIQIDDVKVRQKIIELVR 124 + + EE D +P L L F D ++ ++L + Sbjct: 65 TREHPSAPIKPLDEEEQEWRDEPHSPITLPDDILDEDSLIGRFAYSTDRDTVERYLDLNQ 124 Query: 125 SIVS 128 Sbjct: 125 RFAR 128 >gi|206559002|ref|YP_002229762.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] gi|198035039|emb|CAR50911.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] Length = 189 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 4/106 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + V +R+R R G+SQ +L + G+T + E+G L+ Sbjct: 1 MSETESM----STEVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLK 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + E + ++ FF + S + + + + QL Sbjct: 57 KLLECIPMSLAEFFTFELVESRAVVSRRDEMPNLGNESLAFQLVGA 102 >gi|167755999|ref|ZP_02428126.1| hypothetical protein CLORAM_01519 [Clostridium ramosum DSM 1402] gi|167703991|gb|EDS18570.1| hypothetical protein CLORAM_01519 [Clostridium ramosum DSM 1402] Length = 384 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 40/77 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R G+SQE+L L I+ Q + K+E +N ++ +++ LE ++ Sbjct: 1 MSLGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNIDKIMDVAKALEITLNE 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + + E+ Sbjct: 61 LLGLEEDSNDEYAKLES 77 >gi|220918294|ref|YP_002493598.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|219956148|gb|ACL66532.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 477 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 43/123 (34%), Gaps = 1/123 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G ++R R ++Q +L + LGI+ + E + A L ++++ + + Sbjct: 7 HLGAKVRALRRQRNLTQVQLADRLGISASYLTLIEHNRRPLPALLLIKLADLFQLDLKSL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + E F + R + ++ L ++ + + Sbjct: 67 STENHARVVADLMEVFGDPLFEAHDVTNAEVRDLAS-SSPTAARAVLALYQAYRGAREAS 125 Query: 134 RTI 136 T+ Sbjct: 126 DTL 128 >gi|325833547|ref|ZP_08165996.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1] gi|325485471|gb|EGC87940.1| transcriptional regulator, AbrB family [Eggerthella sp. HGA1] Length = 140 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ RR ++G++QE+L E LG++ Q V K+E G + + ++E L+ + Sbjct: 1 MIGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLDAL 60 Query: 74 FDVSP 78 P Sbjct: 61 VGYDP 65 >gi|210610934|ref|ZP_03288659.1| hypothetical protein CLONEX_00849 [Clostridium nexile DSM 1787] gi|210152234|gb|EEA83241.1| hypothetical protein CLONEX_00849 [Clostridium nexile DSM 1787] Length = 157 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 42/90 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++I+ R I G+SQE LG GI ++KYE G+ +L I+ L I+ Sbjct: 1 MTVGEKIKYYRNIRGISQEMLGNLSGINPATIKKYEYGIRNPKPDQLLKITNALGISINL 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 F D SD+ S + + + + Sbjct: 61 FMDFDIETVSDVLSLLFKLDEQVDMRFEAE 90 >gi|229120644|ref|ZP_04249888.1| hypothetical protein bcere0016_9540 [Bacillus cereus 95/8201] gi|301052670|ref|YP_003790881.1| putative transcriptional regulator [Bacillus anthracis CI] gi|228662817|gb|EEL18413.1| hypothetical protein bcere0016_9540 [Bacillus cereus 95/8201] gi|300374839|gb|ADK03743.1| possible transcriptional regulator; possible DNA-binding protein [Bacillus cereus biovar anthracis str. CI] Length = 149 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|225376313|ref|ZP_03753534.1| hypothetical protein ROSEINA2194_01953 [Roseburia inulinivorans DSM 16841] gi|225211689|gb|EEG94043.1| hypothetical protein ROSEINA2194_01953 [Roseburia inulinivorans DSM 16841] Length = 110 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +G +I+ RR LG++QE + L + + E G + L I+ +L Sbjct: 1 MADLDFKVIGLKIKQRRQELGITQEYIANALDVNPSHISNIECGRANPSLTALIKIANIL 60 Query: 67 ESPISFFFDVSPTVCSDISSEE 88 + +F T + + E+ Sbjct: 61 SCSVDYFISDEYTFEINKNREK 82 >gi|218709441|ref|YP_002417062.1| hypothetical protein VS_1450 [Vibrio splendidus LGP32] gi|218322460|emb|CAV18613.1| Conserved hypothetical protein [Vibrio splendidus LGP32] Length = 142 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 7/126 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++ R + +SQ ++ +G+T Q K+E A+++ +++VL Sbjct: 19 MMIGSVLKEARALKNLSQPEVARLVGVTKQTYLKWENDTTEPKATQISKLAKVLGITSDE 78 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + ++S N+ + + L R + Q+ D + ++S++ SE Sbjct: 79 ICNGKLDSKMALNSFIINMSKVGADSGMVAL-RVWEQVPDHQY------FLKSLLDSEDV 131 Query: 133 YRTIEE 138 E Sbjct: 132 DAEGNE 137 >gi|241661721|ref|YP_002980081.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|240863748|gb|ACS61409.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 194 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 45/116 (38%), Gaps = 6/116 (5%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +DI+ + +R+R R G+S + L E ++ + E+G + A+ L +S L Sbjct: 1 MDIHQRIAQRLRELRDAQGLSLDALAERSQVSRSAISLIERGQSSPTAAVLDRLSSALGV 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 ++ F+ S ++ S T R + R ++LV Sbjct: 61 TLASLFEDSAAPAAEPSPVSRAAEQPEWTDPASGYVR---RNLSPAAR-SPLQLVE 112 >gi|326797834|ref|YP_004315653.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] gi|326548598|gb|ADZ76983.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] Length = 130 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 11/131 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R + GM QE L LG++ Q V EK + A L ++ +L Sbjct: 9 HIGRKISRIRELRGMKQEALAIELGVSQQTVSNMEKSAA-IEADLLAQVASILGVTTEAI 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + S +I + + + + KI+EL ++ +EK+ Sbjct: 68 ENFSEEAVFNIINNTFQDSSSNNNNY----------LCTINPLDKIVELYERLLEAEKEK 117 Query: 134 RTIEEECMVEQ 144 T + + E+ Sbjct: 118 NTYLGKLLEER 128 >gi|325680803|ref|ZP_08160341.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324107583|gb|EGC01861.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 217 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 1 MVGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+G ++ +D I +GK I R M+Q +L E LGI+ + V K+E G AS + Sbjct: 6 MIGTERRIRRMDQIMIGKFIAACRKEKKMTQAQLAEKLGISDRAVSKWETGKCMPDASLM 65 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENN 90 + E L I+ F+ + Sbjct: 66 PELCEQLGISINDLFNGRRVTMENYKEAAEA 96 >gi|321314262|ref|YP_004206549.1| hypothetical protein BSn5_14570 [Bacillus subtilis BSn5] gi|320020536|gb|ADV95522.1| hypothetical protein BSn5_14570 [Bacillus subtilis BSn5] Length = 129 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 2/116 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R M+Q+++ + LGI YE+G L I+ E + + Sbjct: 6 RLKKLRDGKKMNQQEVADNLGIARTTYASYEQGKREPDHETLVKIANFFEVTVDYLLGHQ 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 P + E+ ++ LQ+ + R++ I+ + + EK Sbjct: 66 PNSKPVVHEEKAPYK--VTDDPDLQIAFKDASDFSEEARRQAIDFINYLKEKEKAK 119 >gi|149278032|ref|ZP_01884171.1| hypothetical protein PBAL39_25120 [Pedobacter sp. BAL39] gi|149231230|gb|EDM36610.1| hypothetical protein PBAL39_25120 [Pedobacter sp. BAL39] Length = 121 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 36/101 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+SQ + L ++ + E G + L HI + Sbjct: 8 KEIGERIKNLRLAHGLSQAHISNILYLSRSNYSQIELGNQFPSFNTLHHIGNYYGKTYEW 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 S + + + +V+ L R +++ Sbjct: 68 LLHGSSDPALEQPATKVDVIIRDLESTLKALARSMEKLEKE 108 >gi|90592681|ref|YP_529596.1| RepR; putative repressor [Clostridium phage phi CD119] gi|61697872|gb|AAX53417.1| RepR; putative repressor [Clostridium phage phi CD119] Length = 131 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 13/126 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R ++ E+LG+ L +T V +E L++I++ + + + Sbjct: 6 GNRLKNLRSEKRITGEELGKILNVTKVAVSNWESDRRFPDQDTLKNIADYFDVSVDYLLC 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S + + N F I++ +K+ EL++ I S R Sbjct: 66 RSDARNTINDKVNTS-------------NTTFDIIENSDANKKVKELMKKIYSLNDDDRN 112 Query: 136 IEEECM 141 E+ + Sbjct: 113 AIEKII 118 >gi|58338178|ref|YP_194763.1| hypothetical protein LBA1936 [Lactobacillus acidophilus NCFM] gi|227902636|ref|ZP_04020441.1| XRE family transcriptional regulator [Lactobacillus acidophilus ATCC 4796] gi|58255495|gb|AAV43732.1| hypothetical protein LBA1936 [Lactobacillus acidophilus NCFM] gi|227869542|gb|EEJ76963.1| XRE family transcriptional regulator [Lactobacillus acidophilus ATCC 4796] Length = 174 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 2/106 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + +++ ++I R SQE+L E L ++ Q V K+E G + ++ +S++ Sbjct: 35 KTIEVIRMSLNQKIAQLRNDNNWSQEELAEKLNVSRQSVSKWESGQAKPDLDKIIALSDI 94 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + S+ N +S +LN I Sbjct: 95 FDVSTDYLLKDDNEEKSN--PSTNKHHFSLSWVQFGRLNSAIWAIA 138 >gi|229826230|ref|ZP_04452299.1| hypothetical protein GCWU000182_01602 [Abiotrophia defectiva ATCC 49176] gi|229789100|gb|EEP25214.1| hypothetical protein GCWU000182_01602 [Abiotrophia defectiva ATCC 49176] Length = 243 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 53/116 (45%), Gaps = 1/116 (0%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ +G I+ R ++Q +L + + + + KYEKG + + L I++VL+ Sbjct: 2 NNIESVLGNSIKKCRTNRHLTQMELAKLINKSNTTLAKYEKGEISIDVATLVEIAKVLQV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+ +F + + +++ + + +L YF + + +++++ Sbjct: 62 PLEYFIEAIKEKSEKTAPPQSDSIIPVF-FSSKKLYLYFWDGRNNSLNTSVLKILE 116 >gi|225377603|ref|ZP_03754824.1| hypothetical protein ROSEINA2194_03253 [Roseburia inulinivorans DSM 16841] gi|225210579|gb|EEG92933.1| hypothetical protein ROSEINA2194_03253 [Roseburia inulinivorans DSM 16841] Length = 156 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 37/95 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R G SQE+L E L ++ Q + K+E L IS+ + Sbjct: 12 MNLGEKIKECRKQAGFSQEQLAERLNVSRQAITKWETNKGIPDIVNLIAISDEFGLSLDE 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 V I ++ + I L + Sbjct: 72 LIKDDVAVKKKIITDSSAKKWHILMIVYLVAIVAY 106 >gi|99035914|ref|ZP_01314962.1| hypothetical protein Wendoof_01000192 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 306 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 13/130 (10%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GK+I+ R++ G +Q+ L E + T ++ YE+G + +L I+E L Sbjct: 158 SIYCKIGKKIKEWRIVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSIN 217 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVS 128 I +++ + +E N L + +I+ ++R +I+ L+ I Sbjct: 218 IMDLLELTEDADDKVENELPN------------LIEEYKEIESQELRYVLIKSLLEGIQI 265 Query: 129 SEKKYRTIEE 138 E+K + E+ Sbjct: 266 YEEKVKRAEK 275 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 10/129 (7%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+E L Sbjct: 5 SIRYKIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGTRKISIEKLYAIAEALSVS 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I VS + EE L L R + +I ++R+ L + Sbjct: 65 IVDLIPVSNEKIYLENKEEE----------ILNLIREYKKISGQELRKVFCLLTKFARVG 114 Query: 130 EKKYRTIEE 138 E+ + E Sbjct: 115 EENSKKTER 123 >gi|213019847|ref|ZP_03335649.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994595|gb|EEB55241.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 310 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 12/114 (10%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GK+I+ R++ G +Q+ L E + T ++ YE+G + +L I+E L Sbjct: 165 SIYCQIGKKIKEWRLVRGYTQKDLAEKMSTTRDEISNYEQGRVAIPLEKLYAIAETLSIN 224 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 I +++ + +E N L + +I+ ++R +I+ + Sbjct: 225 IMDLLELTEDADDKVENELPN------------LIEEYKEIESQELRYALIKFL 266 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 10/129 (7%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+E L Sbjct: 12 SIRYQIAQKVRSWRLKRGYTQKDLAGKIGVTYQIVLQYEKGTRKISIEKLYAIAEALSVS 71 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I+ VS + EE L L R + +I ++R+ L + Sbjct: 72 IADLIPVSNEKIYLENKEEE----------ILNLIREYKKISGQELRKVFCLLTKFARVG 121 Query: 130 EKKYRTIEE 138 E+ + E Sbjct: 122 EENSKKTER 130 >gi|196044284|ref|ZP_03111520.1| transcriptional repressor [Bacillus cereus 03BB108] gi|225862972|ref|YP_002748350.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|229183334|ref|ZP_04310562.1| hypothetical protein bcere0004_9090 [Bacillus cereus BGSC 6E1] gi|196024923|gb|EDX63594.1| transcriptional repressor [Bacillus cereus 03BB108] gi|225790632|gb|ACO30849.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|228600118|gb|EEK57710.1| hypothetical protein bcere0004_9090 [Bacillus cereus BGSC 6E1] Length = 149 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|160945560|ref|ZP_02092786.1| hypothetical protein FAEPRAM212_03089 [Faecalibacterium prausnitzii M21/2] gi|158443291|gb|EDP20296.1| hypothetical protein FAEPRAM212_03089 [Faecalibacterium prausnitzii M21/2] Length = 120 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 20/127 (15%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ +PN I +GK+I+ R +GM+Q++L ++ + + E G L Sbjct: 1 MM----MPNADAIALGKQIKAVRKAMGMTQDQLALKSHVSVKYIANIENGKQNPSFDILS 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I VL + + + + E + ++R+ ++ Sbjct: 57 AILHVLPLSLDSIINPNLSELESECREWD----------------AIYLACPPEMRKTLL 100 Query: 121 ELVRSIV 127 E RS+ Sbjct: 101 EATRSLA 107 >gi|304393131|ref|ZP_07375059.1| putative toxin-antitoxin system, toxin component [Ahrensia sp. R2A130] gi|303294138|gb|EFL88510.1| putative toxin-antitoxin system, toxin component [Ahrensia sp. R2A130] Length = 512 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 48/141 (34%), Gaps = 14/141 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K I +G RIR R L ++Q + E LGI+ + E+ + A + Sbjct: 1 MADTK-------IFIGPRIRRIRTGLSLTQTAMAEQLGISASYLNLIERNQRPLTAQLVM 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFIST---PDGLQLNRYFIQIDDVKVRQ 117 + + ++ S E D + + P +L + Sbjct: 54 KLVSTFDIDVTDLQPGSEDGGVAALKEV--FADPLLSGELPGDTELVELSDGAPNAAT-- 109 Query: 118 KIIELVRSIVSSEKKYRTIEE 138 +++L R+ +++ + Sbjct: 110 AVVKLYRAYREQQERLSDLSR 130 >gi|301066025|ref|YP_003788048.1| double-stranded beta-helix-like protein [Lactobacillus casei str. Zhang] gi|300438432|gb|ADK18198.1| Double-stranded beta-helix related protein [Lactobacillus casei str. Zhang] Length = 179 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RIR R+ ++QE+LGE +T + + E + I VL + Sbjct: 1 MEIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGQSPAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF + E++ + ++ G +L Sbjct: 61 FF--REEPKDSLVYHEDDQVTYLDEEKGYRL 89 >gi|255658714|ref|ZP_05404123.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849104|gb|EEX69111.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 189 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 26/72 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R G++Q++ + GI V YE G + L ++ + + Sbjct: 6 RLRALRKKSGLTQDEFSKQTGIGRSAVGMYESGKREPNYTTLSKVARFYHVSTDYLLGRT 65 Query: 78 PTVCSDISSEEN 89 T + + Sbjct: 66 DTPAEPPTRKTE 77 >gi|163941236|ref|YP_001646120.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863433|gb|ABY44492.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 262 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSDISS 86 + ++ Sbjct: 64 ETAEQSNENVD 74 >gi|329117658|ref|ZP_08246375.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326908063|gb|EGE54977.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 331 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 35/81 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE+L E L ++ Q V K+E + +R+ ++E+ + Sbjct: 1 MILADKIIEERKRNGWSQEQLAEKLDVSRQSVSKWEGAQSVPDLNRIIQMAEIFGVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + ++ + N D Sbjct: 61 LLKEDQIKSTLVADDSNKAFD 81 >gi|312875437|ref|ZP_07735441.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2053A-b] gi|315653809|ref|ZP_07906725.1| XRE family transcriptional regulator [Lactobacillus iners ATCC 55195] gi|311089100|gb|EFQ47540.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2053A-b] gi|315488505|gb|EFU78151.1| XRE family transcriptional regulator [Lactobacillus iners ATCC 55195] Length = 210 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 36/74 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ ++QE+L E + ++ V K+E G + L+ I++ L + + Sbjct: 1 MLLGEKIRNARVEASLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60 Query: 73 FFDVSPTVCSDISS 86 D + I Sbjct: 61 LLDKDNAIDLSIIK 74 >gi|226310713|ref|YP_002770607.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226093661|dbj|BAH42103.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 203 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 7/132 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R+R R G++QE+L E + T + YE + L+ +++VL+ + Sbjct: 55 LMLSQRLRTARKTKGLTQEELAEHVCTTKGTISNYENNHSTPPNDMLRQLADVLDVTTDW 114 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + V + I + +IDD + + + EKK Sbjct: 115 LLGRTDEVTAYILPATGETNHRSLDELLQE------KIDDPDDYYFLDGYLDA-SEEEKK 167 Query: 133 YRTIEEECMVEQ 144 + +Q Sbjct: 168 EIRRYWYDLKKQ 179 >gi|228940714|ref|ZP_04103277.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973633|ref|ZP_04134215.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980191|ref|ZP_04140505.1| Helix-turn-helix domain protein [Bacillus thuringiensis Bt407] gi|228779549|gb|EEM27802.1| Helix-turn-helix domain protein [Bacillus thuringiensis Bt407] gi|228786094|gb|EEM34091.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818958|gb|EEM65020.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 277 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 34/82 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ + Sbjct: 68 VFEVSLDYLLKETAEQSNEKEN 89 >gi|229012804|ref|ZP_04169973.1| Helix-turn-helix domain protein [Bacillus mycoides DSM 2048] gi|228748485|gb|EEL98341.1| Helix-turn-helix domain protein [Bacillus mycoides DSM 2048] Length = 262 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 32/74 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 1 MEFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 73 FFDVSPTVCSDISS 86 + ++ + Sbjct: 61 LLKETAEQSNEKEN 74 >gi|229071129|ref|ZP_04204355.1| Helix-turn-helix domain protein [Bacillus cereus F65185] gi|228712069|gb|EEL64018.1| Helix-turn-helix domain protein [Bacillus cereus F65185] Length = 277 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 19 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 78 Query: 76 VSPTVCSDISS 86 + ++ Sbjct: 79 ETAEQSNENVD 89 >gi|170016375|ref|YP_001727294.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803232|gb|ACA81850.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 245 Score = 54.1 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 40/98 (40%), Gaps = 1/98 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ R+ G++Q++ + L I++Q V +E+ A + + E P+ Sbjct: 1 MHIGIKIKQLRISQGLTQQEFADKLFISYQSVSNWERQKRHPTAEMMLTMIETFNLPLD- 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 FF ++ D + + L I Sbjct: 60 FFIMAHDKAHDNEEDLILSAFLTNMSHNLDEIPTLKSI 97 >gi|228950422|ref|ZP_04112582.1| transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809237|gb|EEM55698.1| transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 117 Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ G++Q++L + +G++ V Y +G G LQ I+ L+ + + Sbjct: 5 ERLKSLIEKKGITQQQLADVIGVSHVSVYNYVEGKKAPGTRTLQKIANYLKVTTDYLLGL 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 S + + D T + ++ + + + + R+K +E + V+ EK Sbjct: 65 SDSP------DLTAGQDLQLTKEAHEILQIINDLPEEQ-RKKALEQLEMFVNYEKSK 114 >gi|210632226|ref|ZP_03297243.1| hypothetical protein COLSTE_01137 [Collinsella stercoris DSM 13279] gi|210159684|gb|EEA90655.1| hypothetical protein COLSTE_01137 [Collinsella stercoris DSM 13279] Length = 222 Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 27/71 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + I+ R GM+Q +L E L + + ++E G + +Q ++ V + Sbjct: 13 ISQNIKRLRKQAGMTQVELAEKLDVARSTITQWETGWSSPRMGMVQKLAGVFGVTSADML 72 Query: 75 DVSPTVCSDIS 85 + Sbjct: 73 AEDSEGLPSGA 83 >gi|163816452|ref|ZP_02207816.1| hypothetical protein COPEUT_02641 [Coprococcus eutactus ATCC 27759] gi|158448152|gb|EDP25147.1| hypothetical protein COPEUT_02641 [Coprococcus eutactus ATCC 27759] Length = 268 Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI R + MSQE+ +G++ Q V K+E +L I + + Sbjct: 2 VQIGSRILEYRKKMNMSQEEFANKIGVSRQAVSKWELDKAYPDLDKLVDICGMFGLSLDE 61 Query: 73 FFDVSPTVCSDISSEE 88 + + E Sbjct: 62 LVNGVEQDEEPVMEAE 77 >gi|329889812|ref|ZP_08268155.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845113|gb|EGF94677.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 132 Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 3/106 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+R+R R+ G +Q ++ L ++ Q QKYE G R+ L++ Sbjct: 7 IEQAIGQRLRAARLKAGKTQAEVAAALDVSHQAYQKYEDGDVRITIGAFVRACAELQTDP 66 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + P + SD + S+ G +L + ++ + R Sbjct: 67 AEIL---PRLMSDRGPAPDPFAALGSSIGGYELADCYARMSGFQRR 109 >gi|153812180|ref|ZP_01964848.1| hypothetical protein RUMOBE_02577 [Ruminococcus obeum ATCC 29174] gi|149831835|gb|EDM86921.1| hypothetical protein RUMOBE_02577 [Ruminococcus obeum ATCC 29174] Length = 208 Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++ R G+ QE+L E L ++ + V ++E G N S L I++ + I Sbjct: 11 VKIGNFLKKLRKEKGIIQEQLAEILNVSGRTVSRWETGNNMPDISILVDIADYYDISIPE 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 ++ EE + +S + + F ++ Sbjct: 71 IISG-ERKSEMMNEEERKIAKTMSDYATTEKEKIFKEMK 108 >gi|124486416|ref|YP_001031032.1| adenine deaminase [Methanocorpusculum labreanum Z] gi|124363957|gb|ABN07765.1| helix-turn-helix domain protein [Methanocorpusculum labreanum Z] Length = 347 Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R++ R + G++QE+LGE + + + KYE G +S L +S L I +FF Sbjct: 3 GERLKQARKLSGLTQEELGELVSVEKMTISKYEAGKISPSSSTLISLSRALHVDIDYFF 61 >gi|116494509|ref|YP_806243.1| double-stranded beta-helix-like protein [Lactobacillus casei ATCC 334] gi|191637947|ref|YP_001987113.1| hypothetical protein LCABL_11700 [Lactobacillus casei BL23] gi|227535519|ref|ZP_03965568.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631268|ref|ZP_04674299.1| transcription regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116104659|gb|ABJ69801.1| Double-stranded beta-helix related protein [Lactobacillus casei ATCC 334] gi|190712249|emb|CAQ66255.1| Double-stranded beta-helix related protein [Lactobacillus casei BL23] gi|227186841|gb|EEI66908.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525733|gb|EEQ64734.1| transcription regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327382018|gb|AEA53494.1| Electron transfer flavoprotein FAD-binding domain protein [Lactobacillus casei LC2W] gi|327385175|gb|AEA56649.1| Electron transfer flavoprotein FAD-binding domain protein [Lactobacillus casei BD-II] Length = 179 Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RIR R+ ++QE+LGE +T + + E + I VL + Sbjct: 1 MEIGSRIRDLRIRKNLTQEELGERTDLTKGYISQVEHDQSSPSLETFFDILSVLGESPAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF + E++ + ++ G +L Sbjct: 61 FF--REEPKDSLVYHEDDQVTYLDEEKGYRL 89 >gi|291526522|emb|CBK92109.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 190 Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 1/90 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G ++ R G++QE+ E L ++ + V ++E GVN S L I+E I Sbjct: 4 KKIGSFLKELRKEKGITQEEFAENLNVSGRTVSRWETGVNMPDISLLVDIAEFFNVSIPE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + + E V + +S + Sbjct: 64 IING-ERKSEIMEKEVKEVAEAMSNYAAAE 92 >gi|226328955|ref|ZP_03804473.1| hypothetical protein PROPEN_02857 [Proteus penneri ATCC 35198] gi|225202141|gb|EEG84495.1| hypothetical protein PROPEN_02857 [Proteus penneri ATCC 35198] Length = 125 Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 45/89 (50%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ +G +IR +R L +S + + E +GI+ QQ +YE G+ ++ L HI++ L+ Sbjct: 36 PISQIIGHKIRKQRQQLRLSAKVVAERVGISQQQFSRYENGLCKIDVDMLFHIAQELKVT 95 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTP 98 +FF + S ++ ++ + Sbjct: 96 PAFFLPPNEEQVSAVALTQSKQFWSAQSQ 124 >gi|225405507|ref|ZP_03760696.1| hypothetical protein CLOSTASPAR_04727 [Clostridium asparagiforme DSM 15981] gi|225042960|gb|EEG53206.1| hypothetical protein CLOSTASPAR_04727 [Clostridium asparagiforme DSM 15981] Length = 398 Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 10/136 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G I R G++QE+L +G++ V K+E G + L I+ I Sbjct: 1 MNIGATIVNLRREKGVTQEQLARAVGVSKPAVSKWETGQSCPDIQLLAPIARYFGVTIDA 60 Query: 73 FF--------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + + ++ L R + D ++ K+ L Sbjct: 61 LLSFTRTLSREEADRLAKEVPGIFEQEGFQAGMERCASLVREYP--DSQYLKLKVAGLYT 118 Query: 125 SIVSSEKKYRTIEEEC 140 + ++ EE Sbjct: 119 TCALHFREEERTEENL 134 >gi|126728939|ref|ZP_01744754.1| DNA-binding protein, putative [Sagittula stellata E-37] gi|126710869|gb|EBA09920.1| DNA-binding protein, putative [Sagittula stellata E-37] Length = 466 Score = 53.7 bits (127), Expect = 7e-06, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 44/128 (34%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L ++Q+ LGI+ + + E V + + +++ ++ Sbjct: 9 GAKLRDIRGRLSLTQKDFAAKLGISLPYLNQMENNNRPVSTTVVLALAQEFGFDVTELGQ 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F L R + + + + L R+ + ++ + Sbjct: 69 GDAERLVTDMREALADPIFGDATPQLADLRLTAS-NAPVLARAFLALHRAYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|332686910|ref|YP_004456684.1| repressor protein [Melissococcus plutonius ATCC 35311] gi|332370919|dbj|BAK21875.1| repressor protein [Melissococcus plutonius ATCC 35311] Length = 239 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G +I+ R ++QE L + L T Q + +YE G + L +SE+ E Sbjct: 3 DLSKFIGNKIKEYRERRNLTQEDLADMLNTTRQSISRYETGERKANQDMLFKLSEIYEIS 62 Query: 70 ISFFF 74 I+ FF Sbjct: 63 INDFF 67 >gi|323485286|ref|ZP_08090635.1| hypothetical protein HMPREF9474_02386 [Clostridium symbiosum WAL-14163] gi|323401322|gb|EGA93671.1| hypothetical protein HMPREF9474_02386 [Clostridium symbiosum WAL-14163] Length = 141 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 11/135 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGA 56 MV KK +G I+ R G+SQE L G + K E G N V Sbjct: 1 MVDKKK---DFLKILGNNIKKYRDDKGLSQEALANLCGWNTDNARSTISKIESGTNDVPT 57 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 S+L+ I+E L + + S S E + T + F ++ D R Sbjct: 58 SKLKIIAEKLGVSVCDLMNCSNIQEQSESVELVKQVYDEETKF---VISSFTKL-DAVDR 113 Query: 117 QKIIELVRSIVSSEK 131 K+IE + +++ EK Sbjct: 114 IKVIERINTLLDDEK 128 >gi|313905283|ref|ZP_07838650.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313469894|gb|EFR65229.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 184 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 40/86 (46%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P ++ ++G+RI+ R G++Q++L + +T + + E+G+ L H+ E+L Sbjct: 3 PIDLNKDIGRRIKDLRQRNGLTQQELADRAELTKGFISQLERGLGSPSVETLMHMIEILG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMD 93 S + FF + + D Sbjct: 63 SNPADFFKDEGEQVVFTEEDYSEKTD 88 >gi|325679534|ref|ZP_08159114.1| peptidase S24-like protein [Ruminococcus albus 8] gi|324108821|gb|EGC03057.1| peptidase S24-like protein [Ruminococcus albus 8] Length = 228 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPI 70 ++ +GKRI+ RR LGM+QE LG LG +Q+YE G ++ ++ +++ L Sbjct: 4 NVEIGKRIKKRREELGMTQEALGSPLGFNKSTIQRYEAGKVAKIKLPIIEAMAQRLNVSP 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + S + + ++ + +S+ L Sbjct: 64 EWLALKSDDMGEYHGAPDSLLESKVSSNVAAVL 96 >gi|306835386|ref|ZP_07468407.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] gi|304568752|gb|EFM44296.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] Length = 437 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 3/97 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R G++Q + + LG++ + + E + + L +++ S+F + Sbjct: 7 GARIHALRKQRGLTQVAMAKKLGLSTSYLNQLENDQRPLTVTVLMQLAQRFTVDPSYFAE 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +E ++ S L F ++ Sbjct: 67 DRDIH---TITELRHIFPDASEETLSDLASRFPELMP 100 >gi|325677861|ref|ZP_08157503.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110415|gb|EGC04589.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 180 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ IR R GM+QE L E +G++ Q V K+E G +L +S +L Sbjct: 1 MDIGENIRNARKKKGMTQEMLAEKMGVSRQAVSKWESGKGMPETEKLAELSALLGVSADR 60 Query: 73 FFDVSPTVCSDI 84 + P Sbjct: 61 LIGIRPQEEQSE 72 >gi|282874480|ref|ZP_06283366.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|281296736|gb|EFA89244.1| DNA-binding protein [Staphylococcus epidermidis SK135] Length = 104 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R +L M+QE L + L T Q V K+EK + + L +S++ ++ Sbjct: 1 MVLGEQIKKHRKLLNMTQEDLCQKLNTTRQTVSKWEKNMIEPDINTLLKLSDIFGISLNE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ NV +F+S L Sbjct: 61 LITGEKEFINNSKEM--NVWEFLSEKWWL 87 >gi|302873538|ref|YP_003842171.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] gi|307688282|ref|ZP_07630728.1| transcriptional regulator, XRE family protein [Clostridium cellulovorans 743B] gi|302576395|gb|ADL50407.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] Length = 296 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 2/115 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++ RI+ R G +Q++L LGI V YE+G +L ++++ E + Sbjct: 1 MNNSLANRIKDLRKNNGYTQKELSSLLGIGQTTVANYEQGTRIPDTEKLNKMADLFEVTL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + + + ++ +D S + Y ++ D K R+ I+ L Sbjct: 61 DYLLGRNEKISPSNKEVKSKTIDLKSANET--YLEYLLKGDSKKARKFILSLHEE 113 >gi|229140248|ref|ZP_04268805.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26] gi|228643181|gb|EEK99455.1| Helix-turn-helix domain protein [Bacillus cereus BDRD-ST26] Length = 277 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 34/82 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ + Sbjct: 68 VFEVSLDYLLKENAEQSNEKEN 89 >gi|227530294|ref|ZP_03960343.1| XRE family transcriptional regulator [Lactobacillus vaginalis ATCC 49540] gi|227349771|gb|EEJ40062.1| XRE family transcriptional regulator [Lactobacillus vaginalis ATCC 49540] Length = 203 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++I+ RR L ++Q ++ E +T Q V +E + L IS V + + Sbjct: 1 MKFGEQIKERRQELDLTQAEVAEKYFVTRQAVSNWEHDKTYPDLNMLVKISNVYQISLDS 60 Query: 73 FFDVS 77 Sbjct: 61 LLRED 65 >gi|227502798|ref|ZP_03932847.1| transcriptional regulatory protein [Corynebacterium accolens ATCC 49725] gi|227076528|gb|EEI14491.1| transcriptional regulatory protein [Corynebacterium accolens ATCC 49725] Length = 437 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 3/97 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R G++Q + + LG++ + + E + + L +++ S+F + Sbjct: 7 GARIHALRKQRGLTQVAMAKKLGLSTSYLNQLENDQRPLTVTVLMQLAQRFTVDPSYFAE 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +E ++ S L F ++ Sbjct: 67 DRDIH---TITELRHIFPDASEETLSDLASRFPELMP 100 >gi|197286055|ref|YP_002151927.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194683542|emb|CAR44394.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 97 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 42/81 (51%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P VGK+I R + G++ +L + +GI+ QQ +YE+G+NRV RL + Sbjct: 6 PASKMVGKKIAYYRRVNGLTLSELAKKIGISQQQQSRYERGINRVSLDRLYQYACFFGIS 65 Query: 70 ISFFFDVSPTVCSDISSEENN 90 +S F + +I ++ +N Sbjct: 66 LSDLFQLDDEDKVEIENKISN 86 >gi|196037631|ref|ZP_03104942.1| transcriptional repressor [Bacillus cereus NVH0597-99] gi|228913713|ref|ZP_04077339.1| hypothetical protein bthur0012_9510 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228944755|ref|ZP_04107119.1| hypothetical protein bthur0007_9230 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090075|ref|ZP_04221326.1| hypothetical protein bcere0021_9100 [Bacillus cereus Rock3-42] gi|196031873|gb|EDX70469.1| transcriptional repressor [Bacillus cereus NVH0597-99] gi|228693305|gb|EEL47015.1| hypothetical protein bcere0021_9100 [Bacillus cereus Rock3-42] gi|228814927|gb|EEM61184.1| hypothetical protein bthur0007_9230 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228845905|gb|EEM90930.1| hypothetical protein bthur0012_9510 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 149 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|218902221|ref|YP_002450055.1| hypothetical protein BCAH820_1103 [Bacillus cereus AH820] gi|218539083|gb|ACK91481.1| hypothetical protein BCAH820_1103 [Bacillus cereus AH820] Length = 149 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|257865636|ref|ZP_05645289.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257871972|ref|ZP_05651625.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257799570|gb|EEV28622.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257806136|gb|EEV34958.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 204 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 36/92 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I+ R+ LG++Q+++ E L +T Q + +E + L +S++ + + Sbjct: 1 MTIAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLES 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + F L L Sbjct: 61 LLKPEQAADEPERMSDEKKPTFRLPLYLLNLT 92 >gi|255524707|ref|ZP_05391659.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185668|ref|ZP_06854077.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium carboxidivorans P7] gi|255511601|gb|EET87889.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049796|gb|EFG89221.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium carboxidivorans P7] Length = 120 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 36/97 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R++ R SQE+L E LG+T Q + K+E + + +SE+ + Sbjct: 3 ISERLQKLRKDERYSQEQLAEKLGVTRQAISKWESNQGNPDINNIIKLSEIYNVSTDYLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + I + + + + + I Sbjct: 63 KGEEQISKPIEIDSKENKENTKSRKMFSILLFIAGIS 99 >gi|229047313|ref|ZP_04192912.1| Helix-turn-helix domain protein [Bacillus cereus AH676] gi|228724055|gb|EEL75401.1| Helix-turn-helix domain protein [Bacillus cereus AH676] Length = 277 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNENVD 89 >gi|257792570|ref|YP_003183176.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|325832727|ref|ZP_08165490.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257476467|gb|ACV56787.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|325485866|gb|EGC88327.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 176 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 31/89 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+++ R GMSQ+++ LG+T Q V +E + ++ + + Sbjct: 1 MVGEKLMKLRKKRGMSQQEVASALGVTRQTVSNWECDQGAPSLDKAADLARLYGVSLDDL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQ 102 V + + L+ Sbjct: 61 VADEVEVVVADPDQAAGKPRDLHVLRHLE 89 >gi|313903103|ref|ZP_07836497.1| helix-turn-helix domain protein [Thermaerobacter subterraneus DSM 13965] gi|313466605|gb|EFR62125.1| helix-turn-helix domain protein [Thermaerobacter subterraneus DSM 13965] Length = 218 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 43/112 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R +S ++ G+ F + KYE+ + L+ ++ + E P+S F Sbjct: 4 LGGRLRRIRESRNLSIYEVERRTGMHFSTISKYERNERQPSLDVLRELAALYEVPVSVFL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + + + + L + D + + + E + + Sbjct: 64 TDRLALETLLPQPLAGLALQLLDRPALAEACQRLAALDDQQVEAVAEFLDRV 115 >gi|229165969|ref|ZP_04293734.1| hypothetical protein bcere0007_9450 [Bacillus cereus AH621] gi|228617522|gb|EEK74582.1| hypothetical protein bcere0007_9450 [Bacillus cereus AH621] Length = 149 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|225018551|ref|ZP_03707743.1| hypothetical protein CLOSTMETH_02500 [Clostridium methylpentosum DSM 5476] gi|224948683|gb|EEG29892.1| hypothetical protein CLOSTMETH_02500 [Clostridium methylpentosum DSM 5476] Length = 118 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 43/109 (39%), Gaps = 3/109 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R L ++Q GE LG++ V E G ++ I + + Sbjct: 6 NIKQLRKQLELTQTAFGERLGVSRNVVNNLELGRVDPSDLVIKSICREFNVNSLWLLEGK 65 Query: 78 PTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + S + + ++ ++ + L R ++ + D R+ I++ ++ Sbjct: 66 GEMFSGYADDLIQSVAEEYNLNNFDVDLIRAYLDL-DKDSRRVIMDFIK 113 >gi|167769004|ref|ZP_02441057.1| hypothetical protein ANACOL_00325 [Anaerotruncus colihominis DSM 17241] gi|167668644|gb|EDS12774.1| hypothetical protein ANACOL_00325 [Anaerotruncus colihominis DSM 17241] Length = 136 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 5/131 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + + + +GK IR R G +QE+L + + K E G + L+ Sbjct: 1 MLKQEVMSMKLHRMLGKNIRFWREARGFTQEELAFRAQTSSSYISKMELGKENPTITVLE 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I++ L + + ++ + T +R +V+ + Sbjct: 61 RIAKALAIDPCMLLLNTCRCAENAKKKQICDQQPVLTDYQEAFDRA-----PPEVQCAVY 115 Query: 121 ELVRSIVSSEK 131 L+ + + Sbjct: 116 TLLEEVCKKDS 126 >gi|257455466|ref|ZP_05620700.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] gi|257447129|gb|EEV22138.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] Length = 87 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 33/70 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P + GKRIR R G+SQEKL I + K E+G + +++ ISE L+ Sbjct: 13 HPQIVAFGKRIRTIRKQKGISQEKLALLAQIDRSYMGKIERGEFNLTLTKIYQISEALQV 72 Query: 69 PISFFFDVSP 78 + F Sbjct: 73 SVVTLFQEDE 82 >gi|229814963|ref|ZP_04445301.1| hypothetical protein COLINT_02006 [Collinsella intestinalis DSM 13280] gi|229809450|gb|EEP45214.1| hypothetical protein COLINT_02006 [Collinsella intestinalis DSM 13280] Length = 217 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR++R LGMSQ+ L + ++ Q + +E G + +++EV + Sbjct: 6 IGTGIRIQRERLGMSQQDLAQACMVSRQTISNWETGKTLPDIQSMAYLAEVFGVTVDDLV 65 Query: 75 D 75 + Sbjct: 66 N 66 >gi|139439103|ref|ZP_01772555.1| Hypothetical protein COLAER_01565 [Collinsella aerofaciens ATCC 25986] gi|133775450|gb|EBA39270.1| Hypothetical protein COLAER_01565 [Collinsella aerofaciens ATCC 25986] Length = 127 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 9/121 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R G SQ L + L + + V +E+G +L +++L + + Sbjct: 4 KLKQARKENGYSQADLADALNVDIKTVGNWERGKTLPDIEQLWKCAKILHTDPNDLLGWY 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 D + +L + Q K R KI+E R + Sbjct: 64 EEHPEDRPTVPAGAEG--------ELIACYRQ-STEKRRSKILETARDQAELSQAQAAAP 114 Query: 138 E 138 E Sbjct: 115 E 115 >gi|228966529|ref|ZP_04127582.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228793251|gb|EEM40801.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 277 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 33/82 (40%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L + L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALADKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ Sbjct: 68 VFEVSLDYLLKETAEQSNENME 89 >gi|228477808|ref|ZP_04062436.1| transcriptional regulator, Cro/CI family [Streptococcus salivarius SK126] gi|322374168|ref|ZP_08048701.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C150] gi|228250500|gb|EEK09714.1| transcriptional regulator, Cro/CI family [Streptococcus salivarius SK126] gi|321276873|gb|EFX53945.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C150] Length = 150 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 9/78 (11%), Positives = 30/78 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R ++Q ++ E + + ++E G + ++++ ++ + Sbjct: 8 GDRLKELRKSKKLTQVQVSEMIDVQQGTYSRWENGTLEPSLEAVVKLAKLFDTTTDYLLG 67 Query: 76 VSPTVCSDISSEENNVMD 93 + D+ +D Sbjct: 68 KTIYSTLDVVPHPITRID 85 >gi|251800099|ref|YP_003014830.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547725|gb|ACT04744.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 150 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R G Q++L E L ++ Q V K+E N + IS++ I Sbjct: 4 GEKLKAMRQSKGWPQDELAEKLFVSRQSVSKWENNQNYPSIEIIIKISDLFGVTIDELLR 63 Query: 76 VSPTVCSDISSEENNVMDF 94 + + + + Sbjct: 64 SDEELTQKVIKDSRQLAYP 82 >gi|62389267|ref|YP_224669.1| MerR family transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|21323134|dbj|BAB97762.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] gi|41324601|emb|CAF19083.1| transcriptional regulator, MerR family [Corynebacterium glutamicum ATCC 13032] Length = 474 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 14/132 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+E +FF Sbjct: 5 YVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII---ELVRSIVSSE 130 + ++ ++ ++D P ++L ++ + + +L R++V Sbjct: 65 SRDDDSRL--LAEVQDVMLDREINPANVEL---------QELSEMVYNHPQLARAMVEMH 113 Query: 131 KKYRTIEEECMV 142 ++YR + ++ + Sbjct: 114 QRYRNVRDKFSI 125 >gi|227505625|ref|ZP_03935674.1| MerR family transcriptional regulator [Corynebacterium striatum ATCC 6940] gi|227197778|gb|EEI77826.1| MerR family transcriptional regulator [Corynebacterium striatum ATCC 6940] Length = 468 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 10/128 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+EV +FF Sbjct: 5 YVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + +P L +L+ + R++V ++ Sbjct: 65 SRDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPT---------VARTLVDIHRR 115 Query: 133 YRTIEEEC 140 YR + ++ Sbjct: 116 YRNVRDKL 123 >gi|331092591|ref|ZP_08341410.1| hypothetical protein HMPREF9477_02053 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400602|gb|EGG80216.1| hypothetical protein HMPREF9477_02053 [Lachnospiraceae bacterium 2_1_46FAA] Length = 148 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 38/98 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R +SQ ++ E L +T Q V +E + LQ ++E+ E + Sbjct: 1 MKLGEKLKKYRKERKLSQREVAEKLNVTRQVVSYWECDLTIPDIQILQQLAELYEIDMEE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + + ++ + + + + Sbjct: 61 MLQEENSTTQNEEIAALICGIILAVAFKIPVVNIIVSL 98 >gi|327441218|dbj|BAK17583.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 180 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 40/86 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ G++QE+LGE ++ + + E+ +N L ++ EVL Sbjct: 1 MQIGSKIKALRIKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFNLLEVLGCTPRD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 FFD + + ++++ Sbjct: 61 FFDDTQENEKIVFTKDDQTCFIDQDK 86 >gi|307704502|ref|ZP_07641410.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|307621915|gb|EFO00944.1| helix-turn-helix family protein [Streptococcus mitis SK597] Length = 116 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 15/124 (12%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q L + L Q KYE G + Q +SE I + Sbjct: 3 NRLKKLRKEKGLTQADLAKVLNTNQSQYGKYENGKTNLSLENAQILSEYFGVSIPYLLGY 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + ++L + I + K + L++ + +KK R + Sbjct: 63 EENSTVNKPNAT----------ILIELVKELSFISEKKSK-----LLQEYIELDKKERDV 107 Query: 137 EEEC 140 E+ Sbjct: 108 LEQI 111 >gi|212640460|ref|YP_002316980.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212561940|gb|ACJ34995.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 162 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++IR R +QE+L + L ++ +V K+E G + +S++ F Sbjct: 29 HIGEQIRRLRNAHDWTQEQLAQRLNVSRSKVSKWENGEVLPDLQSIIDMSDLFRVSTDFL 88 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 PT + + + L + RY + ++ +++ ++ + Sbjct: 89 LGKHPTDEQLLQEVRLAYGTNDMSDEQLSVIRYMN--EQPRLAKRLY----ALQALPTHK 142 Query: 134 RTIEEECMVE 143 R EE +++ Sbjct: 143 RKRLEEIVIK 152 >gi|309807458|ref|ZP_07701419.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 01V1-a] gi|308169278|gb|EFO71335.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 01V1-a] Length = 210 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 36/74 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ ++QE+L E + ++ V K+E G + L+ I++ L + + Sbjct: 1 MLLGEKIRNARVEASLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDY 60 Query: 73 FFDVSPTVCSDISS 86 D + I Sbjct: 61 LLDKDNAIDLSIIK 74 >gi|85711364|ref|ZP_01042423.1| putative DNA-binding protein [Idiomarina baltica OS145] gi|85694865|gb|EAQ32804.1| putative DNA-binding protein [Idiomarina baltica OS145] Length = 174 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 43/125 (34%), Gaps = 15/125 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +R++ R G S E G++ + + E+ + + L ++ +S+ Sbjct: 8 VARRLKKLRKDKGWSLTACAEHTGVSKAMLGQIERQESSPTLATLWKLATGFNVSLSWLL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + ++ DF ++ F D + +Q++ +L + + + Sbjct: 68 NDE---------QQPMTFDFAHERIQVERLLAF----DPQTQQEVYKL--CMAEGAQSHS 112 Query: 135 TIEEE 139 Sbjct: 113 DAHRR 117 >gi|327459012|gb|EGF05360.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 205 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 1/98 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 E++ I++ QL+ F+ + Sbjct: 61 LLKG-IEPVVQKEEEQSIKHRRIASNICYQLSLGFVGL 97 >gi|255263387|ref|ZP_05342729.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] gi|255105722|gb|EET48396.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] Length = 139 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 12/123 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G+SQE L + LGI ++ +E +N A++LQ +S +L + + + Sbjct: 26 GDRVAAAREQAGLSQEALAKQLGIKNGTLRNWEHDLNEPRANKLQMLSGILGVSLMWLLN 85 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S E+ G +N +I V+ ++++ + EKK R Sbjct: 86 GEGDGISAPDQED----------LGGDINAVMTEI--RAVKAQLLQAADRMAKLEKKLRA 133 Query: 136 IEE 138 + Sbjct: 134 AAK 136 >gi|313887742|ref|ZP_07821424.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846351|gb|EFR33730.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 185 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G++I+ +R L +SQE L + L +T Q + K+E + L+ +SEV +++F Sbjct: 6 GEKIKSKRRELNLSQEDLADKLFVTRQAISKWENDKATPTMTNLRELSEVFGVDMAYF 63 >gi|295697327|ref|YP_003590565.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295412929|gb|ADG07421.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 181 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 36/87 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++R R G + ++L E ++ + + E+G + I + LE P+ +FF+ Sbjct: 7 KLRRVRQEKGWTIQELAEKCEVSPGLISQVERGRVVPTLTTFWRICQALEVPMHYFFEEQ 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLN 104 + ++ ++ F + L Sbjct: 67 KDESMVVRRDQRKIIHFPGSHVKYHLL 93 >gi|294850380|ref|ZP_06791112.1| conserved hypothetical protein [Staphylococcus aureus A9754] gi|294822723|gb|EFG39160.1| conserved hypothetical protein [Staphylococcus aureus A9754] Length = 197 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 44/97 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R M+QE++ LG+T V K+E G + + L I+ +L+ + Sbjct: 3 IGDVIREYRKRKNMTQEQMANYLGVTAPAVNKWENGNSLPDITLLAPIARLLDISLDTLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 T+ ++ ++ +DF + ++ +++ Sbjct: 63 SFHETLSNEEINKIITELDFKLREETYDEAFHYAKLN 99 >gi|325697585|gb|EGD39470.1| XRE family transcriptional regulator [Streptococcus sanguinis SK160] Length = 205 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 1/98 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L E LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKARGISQEGLAEQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 E++ I++ QL+ F+ + Sbjct: 61 LLKG-IEPVVQKEEEQSIKHRRIASNICYQLSLGFVGL 97 >gi|319650688|ref|ZP_08004827.1| hypothetical protein HMPREF1013_01432 [Bacillus sp. 2_A_57_CT2] gi|317397545|gb|EFV78244.1| hypothetical protein HMPREF1013_01432 [Bacillus sp. 2_A_57_CT2] Length = 294 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RIR R ++ +SQ +L + + T Q+ K EKG AS L ISE L +++F Sbjct: 5 AIGQRIRELRKLMNLSQGELAKGI-CTQAQISKIEKGDVYPYASTLYLISERLGVDVNYF 63 Query: 74 FDVSPTVCSDISSE 87 FD+ T D E Sbjct: 64 FDIGTTPRLDYVQE 77 >gi|166030939|ref|ZP_02233768.1| hypothetical protein DORFOR_00620 [Dorea formicigenerans ATCC 27755] gi|166029206|gb|EDR47963.1| hypothetical protein DORFOR_00620 [Dorea formicigenerans ATCC 27755] Length = 179 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 39/76 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I+ R+ G++QE+L + ++ + + E+ + + L I + L + +S Sbjct: 1 MDIGKKIKELRVAKGLTQEELADRSELSKGFISQLERDLTSPSIATLMDILQCLGTTVSE 60 Query: 73 FFDVSPTVCSDISSEE 88 FF P +E+ Sbjct: 61 FFQEEPEDQIVFQNED 76 >gi|148380346|ref|YP_001254887.1| DNA-binding phage protein [Clostridium botulinum A str. ATCC 3502] gi|148289830|emb|CAL83938.1| putative DNA-binding phage protein [Clostridium botulinum A str. ATCC 3502] Length = 144 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 33/91 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R G++Q +L + L + V +E A L I++ + + Sbjct: 4 IGERIKELREEKGINQLELSKILNVHKGSVSNWENNKRTPDADMLTKIADFFNCSVDYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + S+ + + +L Sbjct: 64 GNTDIKNKLNMSKLFSGAGGLKLDSFKELIE 94 >gi|318605629|emb|CBY27127.1| transcriptional regulator yidN, Cro/CI family [Yersinia enterocolitica subsp. palearctica Y11] Length = 188 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 1/96 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G +++ R G S + E G++ + + E+G + + L I+ L S Sbjct: 6 RHIGNQLKNVRRERGWSLSQTAEQTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSQ 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 F + +P S + F S G+++ F Sbjct: 66 FLE-TPPAQSAALHRHGLLTTFNSETSGMRVVPLFP 100 >gi|317484279|ref|ZP_07943203.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924460|gb|EFV45622.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 272 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 39/83 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ RR +G+SQE L + G++ Q V K+E G + RL +S+VL + F Sbjct: 8 IGGKIQARRKAMGLSQEDLAQLTGVSRQSVTKWETGQSAPDLDRLVEVSDVLGVSLDFLL 67 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 V S S + F Sbjct: 68 REPQQVSSPPSFAVADSPPFAED 90 >gi|226325411|ref|ZP_03800929.1| hypothetical protein COPCOM_03216 [Coprococcus comes ATCC 27758] gi|225206154|gb|EEG88508.1| hypothetical protein COPCOM_03216 [Coprococcus comes ATCC 27758] Length = 135 Score = 53.7 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R+ G++QEK E + ++ Q + +E + + +S++ + Sbjct: 1 MEIGKKLKNARIEAGLTQEKAAEKIDVSRQTISNWENEKSYPDIISVIALSDLYSVSLDE 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + N Sbjct: 61 LLKGDQKMAEHLEESTN 77 >gi|328956459|ref|YP_004373845.1| hypothetical protein CAR_c00780 [Carnobacterium sp. 17-4] gi|328672783|gb|AEB28829.1| hypothetical protein CAR_c00780 [Carnobacterium sp. 17-4] Length = 183 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 32/78 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ +R R ++QE + + L +T Q V ++E+ LQ +S + I Sbjct: 1 MSLGQSLREARAAKDLTQEDIAKVLYVTRQTVSRWEQNKTLPNIFVLQELSSLYGLSIDE 60 Query: 73 FFDVSPTVCSDISSEENN 90 + E + Sbjct: 61 LISETKKSIQKKEEEISM 78 >gi|240949478|ref|ZP_04753818.1| XRE family transcriptional regulator [Actinobacillus minor NM305] gi|240296051|gb|EER46712.1| XRE family transcriptional regulator [Actinobacillus minor NM305] Length = 113 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 42/65 (64%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+RI+ +R G S EKL EC+ ++ QQ+ +YE+G +++ + L I+ ++PI+ Sbjct: 10 DKLIGQRIQQKRKEFGYSAEKLSECINLSQQQLSRYERGASKINVNHLIDIAIFFKTPIN 69 Query: 72 FFFDV 76 +FF Sbjct: 70 WFFQD 74 >gi|229016335|ref|ZP_04173281.1| hypothetical protein bcere0030_9120 [Bacillus cereus AH1273] gi|229022576|ref|ZP_04179104.1| hypothetical protein bcere0029_9260 [Bacillus cereus AH1272] gi|228738725|gb|EEL89193.1| hypothetical protein bcere0029_9260 [Bacillus cereus AH1272] gi|228744982|gb|EEL95038.1| hypothetical protein bcere0030_9120 [Bacillus cereus AH1273] Length = 149 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 31/78 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIYVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + ++ + Sbjct: 65 DEELTQKVIADSKQLAYP 82 >gi|190151419|ref|YP_001974330.1| putative transcriptional repressor [Streptococcus phage PH15] gi|190014413|emb|CAQ57799.1| hypothetical protein [Streptococcus phage PH15] Length = 249 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 42/103 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R+ G +Q++LG +GI+ + YEKG+ + ++ I F Sbjct: 10 IGEKIKQYRLENGWTQQELGSKIGISKNAIGNYEKGIRSPKKDTMFDLANAFGISIDDLF 69 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 S + + + P ++ Y + + + + Sbjct: 70 PQIRKDSYTKISTIQEIYNELKPPRQAKVLTYAKRQLNEQKNE 112 >gi|149013606|ref|ZP_01834177.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] gi|147762797|gb|EDK69752.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] gi|301793448|emb|CBW35821.1| Transcriptional regulator [Streptococcus pneumoniae INV104] Length = 288 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ RR L MSQ +L E + Q+ + E G GA L +++ L+ + +FFD Sbjct: 8 RLKNRRKELKMSQRELAEGI-CKQGQISRLESGEFTPGADFLHALAKKLKVSMDYFFDEQ 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + SE + T + +Y ++++VK + Sbjct: 67 VVEKVEELSEFKKLAQTFITNRNYESLKYIYELENVKAHR 106 >gi|83589146|ref|YP_429155.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572060|gb|ABC18612.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 128 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 51/123 (41%), Gaps = 10/123 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R +G++QE+L E + I+ + YE G L ++ L + F Sbjct: 1 MSIGKRIKELREKIGLTQEELAERVQISRSALANYESGYREPKGEILVRFAKALNTSTDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSE 130 V + +D + F ++ + + R+K++ + I E Sbjct: 61 LLGNEVKVDKTNDKTKKYELD--------EATLLFARLSNLTPEGREKVLRELEWIEELE 112 Query: 131 KKY 133 +K Sbjct: 113 RKR 115 >gi|256848433|ref|ZP_05553875.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] gi|256714700|gb|EEU29679.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] Length = 211 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I++RR G++Q + + L +T Q + +E+G + + L IS+ + I Sbjct: 6 QIKMRRKKRGLTQSVVAKKLYVTRQTISNWEQGKSYPDLNTLVRISDFYQISIDSLLRED 65 Query: 78 PT 79 Sbjct: 66 QD 67 >gi|317123049|ref|YP_004103052.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315593029|gb|ADU52325.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM 12885] Length = 193 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 44/112 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R +S ++ G+ F + KYE+ + L+ ++ + E P++ F Sbjct: 4 LGGRLRRIRESRNLSIYEVERRTGMHFTTISKYERNERQPSLDVLRELAALYEVPVTVFL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + + + + + L + D + + + E + + Sbjct: 64 TDELALETVLPPKLAALARQLLDRPALAEACERLAALDDRQVEAVAEFLDRV 115 >gi|218695133|ref|YP_002402800.1| transcriptional repressor DicA [Escherichia coli 55989] gi|253773470|ref|YP_003036301.1| transcriptional repressor DicA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161633|ref|YP_003044741.1| transcriptional repressor DicA [Escherichia coli B str. REL606] gi|297519572|ref|ZP_06937958.1| transcriptional repressor DicA [Escherichia coli OP50] gi|301018731|ref|ZP_07183033.1| transcriptional repressor DicA [Escherichia coli MS 69-1] gi|331668029|ref|ZP_08368884.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli TA271] gi|218351865|emb|CAU97588.1| HTH-type transcriptional regulator dicA (Repressor protein of division inhibition gene dicA) of prophage [Escherichia coli 55989] gi|242377304|emb|CAQ32048.1| ybl80 [Escherichia coli BL21(DE3)] gi|253324514|gb|ACT29116.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973534|gb|ACT39205.1| prophage CP-9330 DicA-like protein [Escherichia coli B str. REL606] gi|253977729|gb|ACT43399.1| prophage CP-9330 DicA-like protein [Escherichia coli BL21(DE3)] gi|300399570|gb|EFJ83108.1| transcriptional repressor DicA [Escherichia coli MS 69-1] gi|312946171|gb|ADR26998.1| transcriptional repressor DicA [Escherichia coli O83:H1 str. NRG 857C] gi|323947994|gb|EGB43988.1| helix-turn-helix protein [Escherichia coli H120] gi|331064771|gb|EGI36675.1| HTH-type transcriptional regulator DicA (Repressor protein of divisioninhibition protein dicA) [Escherichia coli TA271] Length = 135 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 51/128 (39%), Gaps = 6/128 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ RR L ++Q + G+ + ++E+ + RL +++ L+ ++ Sbjct: 6 LGQRVLARRKELRLTQREAARLAGVAHVTISQWERDETQPVGKRLFALADALKCSPTWLM 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + E ++ TP+ +L F + + L+ + + + + Sbjct: 66 FGDEDKAPVPAQEL--HVETELTPNHKELIELFDALPSSEQ----EALLSEMRARVENFN 119 Query: 135 TIEEECMV 142 + EE + Sbjct: 120 KLFEEMLK 127 >gi|319948673|ref|ZP_08022795.1| Xre family DNA-binding protein [Dietzia cinnamea P4] gi|319437655|gb|EFV92653.1| Xre family DNA-binding protein [Dietzia cinnamea P4] Length = 479 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 15/128 (11%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q + LG++ + + EK V + L ISEV +FF Sbjct: 2 GARLRRLREENGLTQAAFAQSLGLSSSYLNQLEKDTRPVTSRVLVKISEVYGVDSTFFAS 61 Query: 76 VSPTVCSDISSEENNVMDFIST---PDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 S T +E + + + L R L R+ + ++ Sbjct: 62 DSDTRLIAAVTEALTDTQLSTEVPADEVVDLVRAHP------------ALARAFMLLHQR 109 Query: 133 YRTIEEEC 140 YR + Sbjct: 110 YRNSADLL 117 >gi|89098807|ref|ZP_01171688.1| hypothetical protein B14911_05089 [Bacillus sp. NRRL B-14911] gi|89086483|gb|EAR65603.1| hypothetical protein B14911_05089 [Bacillus sp. NRRL B-14911] Length = 299 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 1/102 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I+ R+ G+ Q +L E + T Q+ K E+G +S L I+ L IS+FF Sbjct: 8 LGKKIKDLRVSRGLKQSELSEGI-CTQAQISKIERGDIIPLSSTLYLIARRLGVDISYFF 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ ++ E + R +++++ R Sbjct: 67 GMNGIASNEYVEEVMTQLYNARKKLEYDQVRDIVKVEEKNPR 108 >gi|332653833|ref|ZP_08419577.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332516919|gb|EGJ46524.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 252 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 29/72 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R G+SQE L L ++ Q V K+E G + ++ ++++ + Sbjct: 39 LGEKICTLRTGKGLSQEDLAAKLEVSRQSVSKWETGQSVPDLEKIIKLADLFGVNVDELV 98 Query: 75 DVSPTVCSDISS 86 Sbjct: 99 REGERPQPPKPE 110 >gi|319892096|ref|YP_004148971.1| transcriptional regulator, MerR family, near polyamine transporter [Staphylococcus pseudintermedius HKU10-03] gi|317161792|gb|ADV05335.1| transcriptional regulator, MerR family, near polyamine transporter [Staphylococcus pseudintermedius HKU10-03] Length = 179 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R + ++QE+LGE ++ + + E +I EVL + Sbjct: 1 MEIGQKIKNLRRLKNLTQEELGERTDLSKGYISQIESNKTSPNMETFLNILEVLGTSPRD 60 Query: 73 FFDV 76 FFD Sbjct: 61 FFDD 64 >gi|295107152|emb|CBL04695.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 195 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 32/84 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R G+SQ+ L + ++ Q V +E L +S + + + Sbjct: 1 MELGSQIKRHRTERGLSQDDLAAKIYVSRQTVSSWENDKTYPDVESLLLLSVLFDVTVDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + + M +++ Sbjct: 61 LIKGDVEAMKEAIENDYRKMIYLA 84 >gi|260555242|ref|ZP_05827463.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260411784|gb|EEX05081.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 197 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 4/92 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++I + RIR R+ G + + L ++ + E+G A L+ ++ LE Sbjct: 2 DDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEV 61 Query: 69 PISFFFDVSPTVCSDIS----SEENNVMDFIS 96 P++ F S +E+ D + Sbjct: 62 PLTQIFTNEAGNSSSQPLIRRNEQAEWRDPET 93 >gi|70725257|ref|YP_252171.1| hypothetical protein SH0256 [Staphylococcus haemolyticus JCSC1435] gi|68445981|dbj|BAE03565.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 134 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR R MSQEKL E L ++ + +E+ V+ L ++E+ ++ Sbjct: 6 VGERIRNLRKSKKMSQEKLAEKLNVSRHSISNWERDVSSPDIHALLEMTELFGVSLNHLV 65 Query: 75 DVSP 78 Sbjct: 66 KGDE 69 >gi|38232985|ref|NP_938752.1| putative regulatory protein [Corynebacterium diphtheriae NCTC 13129] gi|38199243|emb|CAE48874.1| Putative regulatory protein [Corynebacterium diphtheriae] Length = 474 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 1/126 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R ++Q L E LGI+ + + E V + L+ I+ +FF Sbjct: 5 YVGSRLRQLRKERDLTQAALAELLGISASYINQIEHDVRPLTPQVLRKITASFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + + P + + R ++E+ R Sbjct: 65 SRDDSSRLIAELHDVMFDKEVCPQPIDVTELSTLVDHHPEAAR-AMVEMHRRYRRLRDNL 123 Query: 134 RTIEEE 139 + ++ Sbjct: 124 DAVTDK 129 >gi|322383375|ref|ZP_08057160.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152334|gb|EFX45155.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 230 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 1/127 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI+ R G++QE+L E L + V YE G + + L++++++ Sbjct: 10 KQMGLRIKKLREEKGLTQEELAEILKMKNRATVSSYEAGRSTPPSDVLRNLADIFNVSAD 69 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + E+N ++L R + ++ +++ E R I S E Sbjct: 70 YLLGRGGNDEFVTPPEDNQGGAVSEIGWAIKLERQSQDMTQKELGKQVGENQRQISSYEL 129 Query: 132 KYRTIEE 138 + + E Sbjct: 130 DLKPVPE 136 Score = 33.6 bits (75), Expect = 8.8, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+L R M+Q++LG+ +G +Q+ YE + V L I EV F Sbjct: 94 EIGWAIKLERQSQDMTQKELGKQVGENQRQISSYELDLKPVPEHTLDKIMEVFGLSFPEF 153 Query: 74 F 74 Sbjct: 154 L 154 >gi|229061195|ref|ZP_04198545.1| Helix-turn-helix domain protein [Bacillus cereus AH603] gi|228718066|gb|EEL69706.1| Helix-turn-helix domain protein [Bacillus cereus AH603] Length = 262 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 1 MEFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDY 60 Query: 73 FFDVSPTVCSDISS 86 + ++ Sbjct: 61 LLKETAEQSNEKEH 74 >gi|229117089|ref|ZP_04246469.1| Helix-turn-helix domain protein [Bacillus cereus Rock1-3] gi|228666378|gb|EEL21840.1| Helix-turn-helix domain protein [Bacillus cereus Rock1-3] Length = 262 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSDISS 86 + ++ + Sbjct: 64 ETAEQSNEKEN 74 >gi|221215602|ref|ZP_03588565.1| transcriptional regulator PuuR [Burkholderia multivorans CGD1] gi|221164590|gb|EED97073.1| transcriptional regulator PuuR [Burkholderia multivorans CGD1] Length = 189 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 4/106 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + V +R+R R G+SQ +L + G+T + E+G L+ Sbjct: 1 MSETESM----STEVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLK 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + E + ++ FF + S + + + + L Sbjct: 57 KLLECIPMSLAEFFTFELVESRSVVSRRDEMPNLGNESLAFHLVGA 102 >gi|58697513|ref|ZP_00372774.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|58536024|gb|EAL59708.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] Length = 247 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 10/129 (7%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+EVL Sbjct: 5 SIRYKIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVG 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I VS + EE L L R + I+D ++R+ L + Sbjct: 65 IIDLIPVSSEKICLKNEEEE----------ILNLVRKYKTINDQELRKVFYLLTKFTRVG 114 Query: 130 EKKYRTIEE 138 EK + E+ Sbjct: 115 EKSSKKAEK 123 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 34/78 (43%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GK+I+ R++ +Q+ L E + T ++ YE+G + +L I+E L Sbjct: 158 SIYYQIGKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIAETLSIS 217 Query: 70 ISFFFDVSPTVCSDISSE 87 I+ + + Sbjct: 218 ITDLLIEEDEIVESELPD 235 >gi|327490617|gb|EGF22398.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] gi|328945826|gb|EGG39977.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 205 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 1/95 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + G++ Q V K+E + ++ +S+ + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQFGVSRQAVSKWESEQSMPDLDKIISMSDYFAVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 E++ I++ QL+ F Sbjct: 61 LLKG-IEPVVQKEEEQSIKHRRIASNICYQLSLGF 94 >gi|229056760|ref|ZP_04196162.1| hypothetical protein bcere0026_8790 [Bacillus cereus AH603] gi|228720554|gb|EEL72118.1| hypothetical protein bcere0026_8790 [Bacillus cereus AH603] Length = 149 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|153853942|ref|ZP_01995275.1| hypothetical protein DORLON_01266 [Dorea longicatena DSM 13814] gi|149753324|gb|EDM63255.1| hypothetical protein DORLON_01266 [Dorea longicatena DSM 13814] Length = 147 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 32/78 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ +GK+++ RM G +QE + E + ++ Q + +E + + +S + + Sbjct: 12 DMEIGKKLKDARMKSGFTQETVAERINVSRQTISNWENEKSYPDIISVIELSSLYSISLD 71 Query: 72 FFFDVSPTVCSDISSEEN 89 + + N Sbjct: 72 DLLKGDERMMEHLEESTN 89 >gi|19919304|gb|AAM08234.1| putative phage repressor [Legionella pneumophila] gi|307608914|emb|CBW98314.1| putative phage repressor [Legionella pneumophila 130b] Length = 227 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESP 69 + +GKRI R G++ + LGE G Q + +E+GV G ++ +++ L+ Sbjct: 6 IKKEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGVRTPGPEEIKLLAQALDVS 65 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ +S T + + ++ + + Sbjct: 66 PAYLMCLSDTQLHREAKNPSQLIPLLDYRQACE 98 >gi|251788781|ref|YP_003003502.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537402|gb|ACT06023.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 76 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + V +G+R+++ R+ G+SQE E G+ + E+GV L ++ Sbjct: 2 KTSDSVKTLLGQRVKMLRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILATG 61 Query: 66 LESPISFFF 74 L + ++ F Sbjct: 62 LHTDLTTLF 70 >gi|229131934|ref|ZP_04260799.1| hypothetical protein bcere0014_8770 [Bacillus cereus BDRD-ST196] gi|228651525|gb|EEL07495.1| hypothetical protein bcere0014_8770 [Bacillus cereus BDRD-ST196] Length = 149 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|163813936|ref|ZP_02205330.1| hypothetical protein COPEUT_00089 [Coprococcus eutactus ATCC 27759] gi|158450806|gb|EDP27801.1| hypothetical protein COPEUT_00089 [Coprococcus eutactus ATCC 27759] Length = 242 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 32/76 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R G++QE+ E +G++ Q V K+E+ RL I E+L+ + Sbjct: 4 IGSRIQEYRKKAGLNQEEFAEKMGVSRQAVSKWERDKAYPDLDRLVCICEILDVQVGELV 63 Query: 75 DVSPTVCSDISSEENN 90 + Sbjct: 64 YGKGEESETPEEVSRD 79 >gi|85706378|ref|ZP_01037472.1| transcriptional regulator, XRE family protein [Roseovarius sp. 217] gi|85669151|gb|EAQ24018.1| transcriptional regulator, XRE family protein [Roseovarius sp. 217] Length = 468 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 8/127 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G +Q + L ++ + E + L +++ Sbjct: 6 IGPRLRQLRRDRGQTQADMARMLNVSPSYINLLENNQRSLSVQMLMSLADAYAVDWRDLT 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 F S LQ R + D R +++L + + YR Sbjct: 66 RDETARRVADLRLAVRDPVFASDRPDLQELRGAV---DHAPR--VVDLFLELHGA---YR 117 Query: 135 TIEEECM 141 T E+ + Sbjct: 118 TALEKIL 124 >gi|325845348|ref|ZP_08168648.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325488602|gb|EGC91011.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 194 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE+L L ++ Q + K+E G + ++EV I Sbjct: 4 MMLGEKIVQLRKEERLSQEQLAMKLNVSRQAISKWELGDAIPDTEHVVRLAEVFNVSIDS 63 Query: 73 FFDVS 77 Sbjct: 64 LLRGD 68 >gi|228953898|ref|ZP_04115937.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805866|gb|EEM52446.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 277 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 19 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 78 Query: 76 VSPTVCSDISS 86 + ++ Sbjct: 79 ETAEQSNENVD 89 >gi|42520477|ref|NP_966392.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225630365|ref|YP_002727156.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225630759|ref|YP_002727550.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|42410216|gb|AAS14326.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225592346|gb|ACN95365.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225592740|gb|ACN95759.1| transcriptional regulator, putative [Wolbachia sp. wRi] Length = 303 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 16/130 (12%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GK+I+ R++ +Q+ L E + T ++ YE+G + +L I+E L Sbjct: 158 SIYYQIGKKIKEWRLVREYTQKDLAEKMDTTRDEISNYEQGRVAIPLEKLYAIAETLSIS 217 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVS 128 I+ + L + + +I+ ++R +I+ L SI Sbjct: 218 ITDLLIEEDEIVESELP---------------DLIKEYKKIESQELRYALIKSLFESIQI 262 Query: 129 SEKKYRTIEE 138 E+K + E+ Sbjct: 263 CEEKVKRAEK 272 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 10/129 (7%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + +++R R+ G +Q+ L +G+T+Q V +YEKG ++ +L I+EVL Sbjct: 5 SIRYKIAQKVRSWRLKRGYTQKDLAGKIGVTYQVVLQYEKGTRKISIEKLYAIAEVLSVG 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I VS + EE L L R + I+D ++R+ L + Sbjct: 65 IIDLIPVSSEKICLKNEEEE----------ILNLVRKYKTINDQELRKVFYLLTKFTRVG 114 Query: 130 EKKYRTIEE 138 EK + E+ Sbjct: 115 EKSSKKAEK 123 >gi|44004571|ref|NP_982240.1| transcriptional regulator [Bacillus cereus ATCC 10987] gi|42741637|gb|AAS45082.1| transcriptional regulator [Bacillus cereus ATCC 10987] Length = 108 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ KR+ R G +Q + L I +E G A + I+E+ I Sbjct: 3 HLSKRLAELRKKRGYTQADISHRLNIARTTYANWEYGKADPDADSIMRIAELHNIFIDEL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQL 103 F + + S + S + + D + L Sbjct: 63 FGRNNPLESKLESIKVALADIPAEKQQEAL 92 >gi|54293108|ref|YP_125523.1| hypothetical protein lpl0147 [Legionella pneumophila str. Lens] gi|53752940|emb|CAH14376.1| hypothetical protein lpl0147 [Legionella pneumophila str. Lens] Length = 234 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 1/93 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESP 69 + +GKRI R G++ + LGE G Q + +E+GV G ++ ++E L+ Sbjct: 16 IKKEIGKRILEARKAKGLTLKALGELAGGLKQTRLTNWEQGVRTPGPEEIKSLAEALDVS 75 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ +S + + ++++ + Q Sbjct: 76 PAYLMCLSDEAQVKVVKKTSHLIPLLDHHQACQ 108 >gi|315648384|ref|ZP_07901483.1| putative transcriptional regulator [Paenibacillus vortex V453] gi|315276078|gb|EFU39424.1| putative transcriptional regulator [Paenibacillus vortex V453] Length = 420 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + +G I R LGM+QE+L LG+++Q V K+E G + +++V + Sbjct: 2 NQANNVMGNNIVRLRKQLGMTQEQLANGLGVSYQAVSKWENGQTCPDIIHIPLLADVFGT 61 Query: 69 PISFFFDVS 77 I F S Sbjct: 62 TIDEIFGRS 70 >gi|261253382|ref|ZP_05945955.1| probable transcriptional regulator [Vibrio orientalis CIP 102891] gi|260936773|gb|EEX92762.1| probable transcriptional regulator [Vibrio orientalis CIP 102891] Length = 180 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 41/94 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VGK+++ R + G+SQ +L + G+T + + E+ + L+ I + + + Sbjct: 1 MDVGKQLKTIRTMRGLSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 FF + DI + + D + L Sbjct: 61 FFTLEVEAKDDIFFTVDQMADLGDGKIKMLLVGA 94 >gi|251811388|ref|ZP_04825861.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|251805137|gb|EES57794.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|319399894|gb|EFV88140.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909] gi|320142644|gb|EFW34450.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 108 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K+I+ R +QE+L E L + Q + K+E+G++ L +S++ + Sbjct: 1 MISKQIKDLRKQHNYTQEELAEKLNTSRQTISKWEQGISEPDLIMLMQLSQLFSVSTDYL 60 Query: 74 FDVSPTVCSDISSE--ENNVMDFISTPDG 100 S + + E N F+S Sbjct: 61 ITGSDNIIKKDNKSYYEMNFWAFMSEKWW 89 >gi|17158094|ref|NP_478090.1| hypothetical protein pTET3_p18 [Corynebacterium glutamicum] gi|17059613|emb|CAD12221.1| hypothetical protein [Corynebacterium glutamicum] Length = 81 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +KK + I +G RIR R LG+SQE+L G+ V E+G + L Sbjct: 1 MTPDKK----ILIQLGGRIRDVRKSLGISQEELAHLSGMHRTYVSSVERGERNISVLNLL 56 Query: 61 HISEVLESPISFFFDV 76 ++ VL Sbjct: 57 SLAGVLGVDAGDLVTG 72 >gi|300904120|ref|ZP_07121994.1| transcriptional repressor DicA [Escherichia coli MS 84-1] gi|301307000|ref|ZP_07213040.1| transcriptional repressor DicA [Escherichia coli MS 124-1] gi|300403913|gb|EFJ87451.1| transcriptional repressor DicA [Escherichia coli MS 84-1] gi|300837790|gb|EFK65550.1| transcriptional repressor DicA [Escherichia coli MS 124-1] gi|315253246|gb|EFU33214.1| transcriptional repressor DicA [Escherichia coli MS 85-1] Length = 135 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ RR L ++Q + G+ + ++E+ + RL +++ L+ ++ Sbjct: 6 LGQRVLARRKELRLTQREAARLAGVAHVTISQWERDETQPVGKRLFALADALKCSPTWLM 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + E ++ TP +L F + + L+ + + + + Sbjct: 66 FGDEDKAPVPAQEL--HVETELTPSHKELIELFDALPSSEQ----EALLSEMRARVENFN 119 Query: 135 TIEEECMV 142 + EE + Sbjct: 120 KLFEEMLK 127 >gi|167462393|ref|ZP_02327482.1| transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 227 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 51/127 (40%), Gaps = 1/127 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI+ R G++QE+L E L + V YE G + + L++++++ Sbjct: 7 KQMGLRIKKLREEKGLTQEELAEILKMKNRATVSSYEAGRSTPPSDVLRNLADIFNVSAD 66 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + E+N ++L R + ++ +++ E R I S E Sbjct: 67 YLLGRGGNDEFVTPPEDNQGGAVSEIGWAIKLERQSQDMTQKELGKQVGENQRQISSYEL 126 Query: 132 KYRTIEE 138 + + E Sbjct: 127 DLKPVPE 133 Score = 33.6 bits (75), Expect = 9.0, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+L R M+Q++LG+ +G +Q+ YE + V L I EV F Sbjct: 91 EIGWAIKLERQSQDMTQKELGKQVGENQRQISSYELDLKPVPEHTLDKIMEVFGLSFPEF 150 Query: 74 F 74 Sbjct: 151 L 151 >gi|126641560|ref|YP_001084544.1| hypothetical protein A1S_1515 [Acinetobacter baumannii ATCC 17978] gi|184157878|ref|YP_001846217.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|239502244|ref|ZP_04661554.1| transcriptional regulator [Acinetobacter baumannii AB900] gi|332872520|ref|ZP_08440490.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] gi|126387444|gb|ABO11942.1| hypothetical protein A1S_1515 [Acinetobacter baumannii ATCC 17978] gi|183209472|gb|ACC56870.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|238685471|gb|ACR54771.1| predicted transcriptional regulator [Acinetobacter genomosp. 13TU] gi|255076973|gb|ACU00285.1| transcriptional regulator [Acinetobacter baumannii] gi|322508196|gb|ADX03650.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2] gi|323517283|gb|ADX91664.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|323517795|gb|ADX92176.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332739326|gb|EGJ70183.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] Length = 197 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 4/92 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++I + RIR R+ G + + L ++ + E+G A L+ ++ LE Sbjct: 2 DDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEV 61 Query: 69 PISFFFDVSPTVCSDIS----SEENNVMDFIS 96 P++ F S +E+ D + Sbjct: 62 PLTQIFTNEAGNSSSQPLIRRNEQAEWRDPET 93 >gi|159045029|ref|YP_001533823.1| hypothetical protein Dshi_2488 [Dinoroseobacter shibae DFL 12] gi|157912789|gb|ABV94222.1| hypothetical protein Dshi_2488 [Dinoroseobacter shibae DFL 12] Length = 467 Score = 53.7 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 40/129 (31%), Gaps = 8/129 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R +Q ++ + LGI+ V EK V L + E Sbjct: 4 FIGPRLRRLRRDANQTQAEMAKALGISNSYVNMLEKNERSVSVPVLLRLFEAYGVDWRDI 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D T + F L R + ++ RS + Y Sbjct: 64 ADEDDTATLNALRAAFQDPLFHDHSPDLPQLRALLSHAP--------DVARSFLQLHHAY 115 Query: 134 RTIEEECMV 142 R ++ +V Sbjct: 116 RAATDQLLV 124 >gi|261758784|ref|ZP_06002493.1| transcriptional regulator [Brucella sp. F5/99] gi|261738768|gb|EEY26764.1| transcriptional regulator [Brucella sp. F5/99] Length = 340 Score = 53.7 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 2/125 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R G++Q + E LGI+ + E+ + L ++ V + + Sbjct: 9 GPRIRRIRNERGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKLDLDSLQA 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S + + + ++ + P +L + V I++L R+ +++ Sbjct: 69 ESGSTVTGLKEVFSDPLLTGELPGDQELVEIGEAAPNAAV--GIMKLYRAYREQQQRLSD 126 Query: 136 IEEEC 140 + + Sbjct: 127 LSKLL 131 >gi|317490283|ref|ZP_07948769.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA] gi|316910573|gb|EFV32196.1| hypothetical protein HMPREF1023_02469 [Eggerthella sp. 1_3_56FAA] Length = 143 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 35/65 (53%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ RR ++G++QE+L E LG++ Q V K+E G + + ++E L+ + Sbjct: 4 MIGSNIQSRRKMVGLTQEQLAERLGVSRQTVTKWETGDSTPDLANAGALAEALDVSLDAL 63 Query: 74 FDVSP 78 P Sbjct: 64 VGYDP 68 >gi|294790815|ref|ZP_06755973.1| DNA-binding protein [Scardovia inopinata F0304] gi|294458712|gb|EFG27065.1| DNA-binding protein [Scardovia inopinata F0304] Length = 373 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 11/112 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+ I R G++QE+L E LG++ V K+E G + L I+ + + Sbjct: 4 IQIGRNISQLRREKGITQEELAEYLGVSKPAVSKWESGQSYPDILLLPIIASYFDKTVDD 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P + ++ ++L F V Q+ E+++ Sbjct: 64 LLGYQPQMTAEDIK-----------KLYIELADAFATEPFDPVYQRCKEIIK 104 >gi|228909441|ref|ZP_04073266.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 200] gi|228850218|gb|EEM95047.1| Helix-turn-helix domain protein [Bacillus thuringiensis IBL 200] Length = 277 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 34/82 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKTKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ + Sbjct: 68 VFEVSLDYLLKETAEQSNEKEN 89 >gi|187779176|ref|ZP_02995649.1| hypothetical protein CLOSPO_02771 [Clostridium sporogenes ATCC 15579] gi|187772801|gb|EDU36603.1| hypothetical protein CLOSPO_02771 [Clostridium sporogenes ATCC 15579] Length = 155 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 47/116 (40%), Gaps = 3/116 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+++ R G+SQE + E L ++ Q + K+E ++ + +S++ + Sbjct: 1 MSLGEKLLYLRKKSGLSQEDVAEKLSVSRQTISKWETDQTVPELNKAKLLSQLYNVSYDY 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRS 125 + + I + + + + + I + +KI E+ S Sbjct: 61 LISENYISGDVTGIEMIVDEIDWTGAWSKKYPILASYPGIKGINTYSKKISEIYDS 116 >gi|145220714|ref|YP_001131392.1| hypothetical protein Mflv_0109 [Mycobacterium gilvum PYR-GCK] gi|315442334|ref|YP_004075213.1| transcriptional regulator [Mycobacterium sp. Spyr1] gi|145213200|gb|ABP42604.1| protein of unknown function DUF955 [Mycobacterium gilvum PYR-GCK] gi|315260637|gb|ADT97378.1| predicted transcriptional regulator [Mycobacterium sp. Spyr1] Length = 482 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 9/127 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGARVRQLRSERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E D D ++ L R++V+ ++Y Sbjct: 65 ASQDDTRLIAELREVTMDRDLDVEVDPAEIAEVVASHPS---------LARAMVNLHRRY 115 Query: 134 RTIEEEC 140 + + Sbjct: 116 QLTTTQL 122 >gi|332654130|ref|ZP_08419874.1| RNA polymerase ECF-type sigma factor [Ruminococcaceae bacterium D16] gi|332517216|gb|EGJ46821.1| RNA polymerase ECF-type sigma factor [Ruminococcaceae bacterium D16] Length = 259 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R G+SQE L + LG++ Q VQK+E G +R L + + + Sbjct: 7 QRLYELRKQSGLSQEGLADLLGVSRQAVQKWEAGTSRPDLDNLAALGRYFNVSLDYLVTG 66 Query: 77 SPTVCSDI 84 S Sbjct: 67 QEAQVSPS 74 >gi|293374180|ref|ZP_06620511.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292647209|gb|EFF65188.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 191 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE+L L ++ Q + K+E G + ++EV I Sbjct: 1 MMLGEKIVQLRKEERLSQEQLAMKLNVSRQAISKWELGDAIPDTEHVVRLAEVFNVSIDS 60 Query: 73 FFDVS 77 Sbjct: 61 LLRGD 65 >gi|227545281|ref|ZP_03975330.1| possible transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300908647|ref|ZP_07126110.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] gi|227184750|gb|EEI64821.1| possible transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300894054|gb|EFK87412.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 161 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 K+++ R G+SQE + + + +T Q V ++E G + ++ + + + Sbjct: 21 KQLKKLRTDKGLSQEDIAQKIHVTRQAVSRWEAGSSVPDLETAVQLAAFFDVSLDWL 77 >gi|149203921|ref|ZP_01880889.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149142363|gb|EDM30408.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 207 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P P+D +G R+R R G + E+ + G+ + K E G L+ +++ L Sbjct: 21 APEPLD--LGARVRSLRKARGWTLEQAAKQAGLARSTLSKIENGQMSPTYDALKKLAQGL 78 Query: 67 ESPISFFFD 75 E + F Sbjct: 79 EISVPQLFT 87 >gi|227821987|ref|YP_002825958.1| putative transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] gi|227340987|gb|ACP25205.1| putative transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 466 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 45/119 (37%), Gaps = 3/119 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G R+R R LG++Q + L ++ + E+ V A L +++ + +S Sbjct: 6 IYLGPRLRRLRKDLGLTQAHMAADLDVSPSYIALMERNQRPVTAEVLLRLAKAYKIDLSS 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKIIELVRSIVSSE 130 + S + I+ + + D I + + + ++ L + + Sbjct: 66 LAEESGSDL--IARLQAAMKDPIFAEIDVSPLELADVLSSFPGFTEAMLRLYTAYKEEQ 122 >gi|238921784|ref|YP_002935298.1| hypothetical protein EUBELI_20017 [Eubacterium eligens ATCC 27750] gi|238873456|gb|ACR73164.1| Hypothetical protein EUBELI_20017 [Eubacterium eligens ATCC 27750] Length = 177 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Query: 9 NPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N +D +G ++ R ++QE+L E + ++ + V ++E G N S L +++ + Sbjct: 5 NSMDQKKIGSFLKELRKEKDITQEQLAEKIKVSGRTVSRWETGSNMPDISLLAQLADFYD 64 Query: 68 SPISFFFDVSPTVCSDISS 86 I D + Sbjct: 65 VSIPEIIDGERKSENMNEE 83 >gi|239817492|ref|YP_002946402.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239804069|gb|ACS21136.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 120 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PN V + +G+ +R R G++Q +L + ++ K E+G L + L+ Sbjct: 19 PNAVTLALGRNLRYFREQAGLTQVELAFDAEVERSRISKIERGHVNPSLLTLATLCYCLK 78 Query: 68 SPISFFFDVSPTVCSDI 84 + F+ + Sbjct: 79 ITLPTLFEGMKETLAPS 95 >gi|218898722|ref|YP_002447133.1| helix-turn-helix domain protein [Bacillus cereus G9842] gi|218540740|gb|ACK93134.1| helix-turn-helix domain protein [Bacillus cereus G9842] Length = 262 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSDISS 86 + ++ + Sbjct: 64 ETAEQSNEKEN 74 >gi|307129603|ref|YP_003881619.1| MunI regulatory protein [Dickeya dadantii 3937] gi|306527132|gb|ADM97062.1| MunI regulatory protein [Dickeya dadantii 3937] Length = 76 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + V +G+R++ R+ G+SQE E G+ + E+GV L ++ Sbjct: 2 KTSDSVKTLLGQRVKALRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILATG 61 Query: 66 LESPISFFF 74 L + ++ F Sbjct: 62 LHTDLTTLF 70 >gi|238025512|ref|YP_002909744.1| DNA-binding protein [Burkholderia glumae BGR1] gi|237880177|gb|ACR32509.1| DNA-binding protein [Burkholderia glumae BGR1] Length = 193 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 58/146 (39%), Gaps = 11/146 (7%) Query: 1 MVGNKKIPNPVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 MV + + P + + +G +IR R L + ++ GI+ + + E+G+ + Sbjct: 1 MVASTENTQPRNAAVELGSKIRALRQRLKRTLDETASAAGISKPFLSQVERGLASPSITS 60 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 L I++ L + +F + S E+ F + F ++ +V ++ Sbjct: 61 LAGIAQALGVNVQYFVETPSEERSVCRGEQLRFFSFADS------ANLFARLTNVSAGRQ 114 Query: 119 IIELVRSIVSSEKKYR---TIEEECM 141 + ++ + +K+ EE + Sbjct: 115 LEAILVRMPPGQKRSEVTTHAGEEFL 140 >gi|296138750|ref|YP_003645993.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026884|gb|ADG77654.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 191 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 5/117 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +PV VG R+R R ++ + E GI+ + + E G + L Sbjct: 1 MTETT---DPVLAQVGPRLRAIRQERDITLTAVAEATGISVSTLSRLEGGTRKPTLELLL 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKV 115 ++ P+ D T + + D P + R F ++ + Sbjct: 58 PLARTYGLPLDELVDAPETGDPRVRLKPVRHGDRTIVPLTRRAGGLRTFKEVIRPRP 114 >gi|221199771|ref|ZP_03572814.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2M] gi|221208624|ref|ZP_03581624.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2] gi|221171435|gb|EEE03882.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2] gi|221180010|gb|EEE12414.1| transcriptional regulator PuuR [Burkholderia multivorans CGD2M] Length = 189 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 4/106 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + V +R+R R G+SQ +L + G+T + E+G L+ Sbjct: 1 MSETESM----STEVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLK 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + E + ++ FF + S + + + + L Sbjct: 57 KLLECIPMSLAEFFTFELVESRSVVSRRDEMPNLGNESLAFHLVGA 102 >gi|167768289|ref|ZP_02440342.1| hypothetical protein CLOSS21_02845 [Clostridium sp. SS2/1] gi|296450915|ref|ZP_06892663.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296878605|ref|ZP_06902610.1| XRE family transcriptional regulator [Clostridium difficile NAP07] gi|167709813|gb|EDS20392.1| hypothetical protein CLOSS21_02845 [Clostridium sp. SS2/1] gi|296260218|gb|EFH07065.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296430412|gb|EFH16254.1| XRE family transcriptional regulator [Clostridium difficile NAP07] Length = 135 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R+ GM+QE + E + ++ Q + +E + + +S + + Sbjct: 1 MEIGKKLKNARVQSGMTQENVAEKINVSRQTISNWENEKSYPDIINVIELSNLYSISLDE 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + N Sbjct: 61 LLKGDEKMIEHLEESTN 77 >gi|225390137|ref|ZP_03759861.1| hypothetical protein CLOSTASPAR_03887 [Clostridium asparagiforme DSM 15981] gi|225043790|gb|EEG54036.1| hypothetical protein CLOSTASPAR_03887 [Clostridium asparagiforme DSM 15981] Length = 194 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 6/130 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK IR R G++Q +L + I+ Q V K+E+G+ S L +SEVL Sbjct: 4 VKIGKLIRALRKDQGLTQRQLAAAMNISEQAVSKWERGLGFPDVSLLPELSEVLGVSPET 63 Query: 73 FFDVS---PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + + + K+R +EL ++ + Sbjct: 64 VLSGEMDANDLVGGNMKKLKFYVCPTCGNLITATVEAAVSCCGKKLRP--MELQKA-GAE 120 Query: 130 EKKYRTIEEE 139 EK + E+ Sbjct: 121 EKLKVELIEQ 130 >gi|311278398|ref|YP_003940629.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308747593|gb|ADO47345.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 83 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 37/81 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + +G+RIR R+ +G+SQE + GI + E+GV + IS+ Sbjct: 2 KNTGSIKKILGERIRTLRLDMGLSQEAFADKCGIDRTYMSGIERGVRNPTLIVICAISDG 61 Query: 66 LESPISFFFDVSPTVCSDISS 86 LE +S F + +D + Sbjct: 62 LEMDLSHLFMFADGAHADNEA 82 >gi|295696288|ref|YP_003589526.1| transcriptional regulator of molybdate metabolism, XRE family [Bacillus tusciae DSM 2912] gi|295411890|gb|ADG06382.1| transcriptional regulator of molybdate metabolism, XRE family [Bacillus tusciae DSM 2912] Length = 392 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 30/66 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI RR LG SQE L + LG++ Q + E G + ++ VL + + FD Sbjct: 13 GRRISERRKALGWSQELLADRLGVSRQFIGALEAGRSWPSVPVALELARVLGTSVEALFD 72 Query: 76 VSPTVC 81 Sbjct: 73 PQEAGE 78 >gi|259909794|ref|YP_002650150.1| Putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224965416|emb|CAX56948.1| Putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] Length = 124 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 9/112 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R GM+Q ++ + L ++ Q VQ +E G R+ S L ++ +L + Sbjct: 16 LGRRITALRKDAGMTQTQVAQALNVSQQAVQAWEAGRRRIQISILPAVARLLSVSLEDLL 75 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +P P LQL + K ++ I E++ ++ Sbjct: 76 GEAPEEKIARKRGPA--------PKWLQLIEEIDSLPKAK-QKMISEMLSAL 118 >gi|167630842|ref|YP_001681341.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] gi|167593582|gb|ABZ85330.1| transcriptional regulator, putative [Heliobacterium modesticaldum Ice1] Length = 272 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 64/137 (46%), Gaps = 10/137 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R+R R LG++Q ++ E G++ + + E+G + ++ ++E + +F Sbjct: 134 IATRLRSIREQLGLTQAEVAERAGVSPGLIGQIEQGKVQPSLRTIERVAEAVGVTPCYFL 193 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK--IIELV--------R 124 P++ + + ++++ + P Q R +++ ++R ++ L+ R Sbjct: 194 VPQPSLENLLPVLGDDLIRLLGEPPIQQTLRMIYDLNEAELRFLFGVVRLIKQTGLVGSR 253 Query: 125 SIVSSEKKYRTIEEECM 141 +++ E +IEEE + Sbjct: 254 RMLNEEACLSSIEEEGI 270 Score = 39.0 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++RL R G++ ++L GI+ + ++ E R L+ +++ L I Sbjct: 69 LGQKLRLLREERGLALQELARLAGISIETLRAIEAEEVRPSVDTLRTLADHLNVSIPQLM 128 Score = 33.6 bits (75), Expect = 7.9, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 11/117 (9%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R G+S +++ G++ + + E+G + + IS L + +P Sbjct: 6 IRRVREEKGLSLQEVSRLSGVSVSYLSEIERGTKQPAPRIIDKISTALGLKRE---EGNP 62 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRY-------FIQIDDVKVRQKIIELVRSIVS 128 ++ ++ +L R I+ +VR + L R++ Sbjct: 63 EGGEIGLGQKLRLLREERGLALQELARLAGISIETLRAIEAEEVRPSVDTL-RTLAD 118 >gi|32266247|ref|NP_860279.1| hypothetical protein HH0748 [Helicobacter hepaticus ATCC 51449] gi|32262297|gb|AAP77345.1| hypothetical protein HH_0748 [Helicobacter hepaticus ATCC 51449] Length = 228 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 39/91 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++ R M+Q+ E GI++ +Q YE G L +S++ P+ FF Sbjct: 1 MIGSKLVALRNEHQMTQKDFAERTGISYGTLQAYEYGTQSPRYDYLTKVSDIFNVPMIFF 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D ++ + ++ + V D + L Sbjct: 61 LDDDTSLGNSYTNPKGFVSDSLDVRKSDSLV 91 >gi|329890393|ref|ZP_08268736.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845694|gb|EGF95258.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 476 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 3/127 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R L +SQ + LG++ + E+ V A L ++E + + Sbjct: 9 LFLGGRLKRLRRELDLSQTAMAADLGVSPSYLNHIERNQRPVSAQLLLRLAETYDVDLRN 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKIIELVRSIVSSEK 131 + + D + + + +D V ++ L R+ Sbjct: 69 L--GQSGGPASEAELAEVFADPLFQGLAVPRHEIMQLAEDQPAVADAVLRLYRAFTDRRV 126 Query: 132 KYRTIEE 138 + R E Sbjct: 127 RDRAEVE 133 >gi|319940112|ref|ZP_08014466.1| hypothetical protein HMPREF9459_01456 [Streptococcus anginosus 1_2_62CV] gi|319810826|gb|EFW07153.1| hypothetical protein HMPREF9459_01456 [Streptococcus anginosus 1_2_62CV] Length = 169 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 5/95 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + KRI R G SQ++L E + ++ Q + K+E ++ +S++ + + Sbjct: 1 MQINKRIFELRKERGWSQDQLAEKVNVSRQSISKWESAQALPEIEKVIELSKIFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + E + Q R F Sbjct: 61 LL-----LDQADEKEARPKWTTSESEGYQQEVRSF 90 >gi|310829202|ref|YP_003961559.1| XRE family transcriptional regulator [Eubacterium limosum KIST612] gi|308740936|gb|ADO38596.1| XRE family transcriptional regulator [Eubacterium limosum KIST612] Length = 123 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 45/114 (39%), Gaps = 6/114 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R+ ++QEK + + KYEK N L I++ + + + Sbjct: 7 GSRLKALRLSKNLTQEKFANIFYLNKSSISKYEKDKNLPENQLLIKIADFFDVSVDYLLC 66 Query: 76 VSP-----TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + S E + ++ + + + + D +++++++ +R Sbjct: 67 RTSQQKLLPSNPKPMSGEEFLSSYVFSEEETEAFAAYFSFPDD-LKKEVLDYIR 119 >gi|311741010|ref|ZP_07714835.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311303812|gb|EFQ79890.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 492 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 10/128 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+EV +FF Sbjct: 28 YVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVDATFF 87 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + +P L +L+ + R++V ++ Sbjct: 88 SRDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPT---------VARTLVDVHRR 138 Query: 133 YRTIEEEC 140 YR + ++ Sbjct: 139 YRNVRDKL 146 >gi|225017175|ref|ZP_03706367.1| hypothetical protein CLOSTMETH_01100 [Clostridium methylpentosum DSM 5476] gi|224950094|gb|EEG31303.1| hypothetical protein CLOSTMETH_01100 [Clostridium methylpentosum DSM 5476] Length = 131 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 7/115 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPI 70 + +GKR++L R G++ + + + +G+ VQ+YE G+ ++ L I++VL Sbjct: 3 NREIGKRMKLAREQSGLTLQAVADRVGVAASTVQRYEAGGIEKLKLPVLNAIADVLGVDP 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + T + +NV L L R Q+ + RQKII++ S Sbjct: 63 GWL-----TGSETACAPADNVAQTGEERKLLMLCRRAEQLP-PEKRQKIIDIFES 111 >gi|283479888|emb|CAY75804.1| HTH-type transcriptional regulator dicA; Repressor protein of division inhibition gene dicA [Erwinia pyrifoliae DSM 12163] Length = 137 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 9/112 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R GM+Q ++ + L ++ Q VQ +E G R+ S L ++ +L + Sbjct: 29 LGRRITALRKDAGMTQTQVAQALNVSQQAVQAWEAGRRRIQISILPAVARLLSVSLEDLL 88 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +P P LQL + K ++ I E++ ++ Sbjct: 89 GEAPEEKIARKRGPA--------PKWLQLIEEIDSLPKAK-QKMISEMLSAL 131 >gi|42518105|ref|NP_964035.1| hypothetical protein LJ0020 [Lactobacillus johnsonii NCC 533] gi|41582389|gb|AAS08001.1| hypothetical protein LJ_0020 [Lactobacillus johnsonii NCC 533] Length = 266 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 60/137 (43%), Gaps = 6/137 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R L ++Q+++ ++ + E+ R+ A L I +V IS Sbjct: 1 MTIGELLKENRKKLNLTQKEM-AGTIVSTSFYSRVEQDNTRISAIDLLKILKVHHINISD 59 Query: 73 FFD-----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 F D ++ D + + F + D + + +I + + + I+L+ +++ Sbjct: 60 FIDQLTIKLNNQTDEDEIIDTLFIAFFNNDIDTVMQLKKYIYLRASQTTKLYIKLIEALL 119 Query: 128 SSEKKYRTIEEECMVEQ 144 ++ ++E ++ + Sbjct: 120 KQDRTILNKQDEDLIRK 136 >gi|107027170|ref|YP_624681.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691438|ref|YP_836971.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896544|gb|ABF79708.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU 1054] gi|116649438|gb|ABK10078.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 123 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 12/109 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R L M+Q + GE G+ Q YE+G AS L ++E + + + Sbjct: 7 RLKQERRRLQMNQAEFGEAGGVRKQAQSNYEQGSRIPDASYLTRLAE-IGVDVQYLLTGR 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+ ++ + +L + + R+ ++ LV +I Sbjct: 66 PSDPGTLALTGDE-----------ELLLAGFRELKPRERRGVLALVAAI 103 >gi|310828173|ref|YP_003960530.1| transcription regulator [Eubacterium limosum KIST612] gi|308739907|gb|ADO37567.1| transcription regulator [Eubacterium limosum KIST612] Length = 99 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 5/100 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++R R G +Q++L + LGIT V YE L+ I+ L + F Sbjct: 2 VYFGSKLRQLRQEKGYTQQQLADKLGITKGSVSAYETSAKYPSVDVLRKIAVTLNTSTDF 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +S ++ ++ + I++ L F +++ Sbjct: 62 LLGLSDERVFNLDFLTDDQIHIINS-----LIAEFNHLNN 96 >gi|257875245|ref|ZP_05654898.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257809411|gb|EEV38231.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 204 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 36/92 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I+ R+ LG++Q+++ E L +T Q + +E + L +S++ + + Sbjct: 1 MTIAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLES 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + F L L Sbjct: 61 LLKPEQLAEEPEIKSDEKKPTFRLPLYLLNLT 92 >gi|169827339|ref|YP_001697497.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168991827|gb|ACA39367.1| transcriptional regulator (phage-related) [Lysinibacillus sphaericus C3-41] Length = 118 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +R++ R ++Q + + L I+ YE+G N + +Q ++E + +++ Sbjct: 4 VSQRLKELRKEAKLTQADVAKFLSISESAYGYYEQGRNEISIGSVQKLAEKYDVSVAYIL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK--IIELVR 124 + +E F + P+ + + D+ VR+ I E+++ Sbjct: 64 CETDEK-QPFDKDEAAFHAFANDPELQVFYKELPKSDEETVRRLRDIWEIIK 114 >gi|148261636|ref|YP_001235763.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326405126|ref|YP_004285208.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146403317|gb|ABQ31844.1| transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] gi|325051988|dbj|BAJ82326.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 110 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 19/128 (14%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K+ P +VG+RIR R+ ++Q++ LG++ + ++E L+ Sbjct: 1 MAPKKQTPPE---SVGQRIRALRLANNLTQDEFAAQLGVSRSAIAQWETDRAGQVRENLE 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 IS+VL + I++ L L R + + RQ ++ Sbjct: 58 RISKVLGTSIAYLVSGETGSLQGDE---------------LALMRLYRACA-AEDRQILL 101 Query: 121 ELVRSIVS 128 + + Sbjct: 102 RTAKRLAR 109 >gi|332363209|gb|EGJ40994.1| XRE family transcriptional regulator [Streptococcus sanguinis SK49] Length = 205 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 1/98 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFAVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 E++ I++ QL+ F+ + Sbjct: 61 LLKG-IEPVVQKEEEQSIKHRRIASNICYQLSLGFVGL 97 >gi|325687047|gb|EGD29070.1| DNA-binding protein [Streptococcus sanguinis SK72] Length = 197 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK+I+ R +SQ+ L E + ++ Q + +E+G L +S+V E + Sbjct: 1 MQVGKQIQHYRKEKNLSQDDLAEIIFVSRQSISNWERGATYPDVQNLLLLSKVFEVSLDK 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 I + + Sbjct: 61 LVKGDLETMKQIIHNQEFMH 80 >gi|229028813|ref|ZP_04184915.1| hypothetical protein bcere0028_9180 [Bacillus cereus AH1271] gi|228732500|gb|EEL83380.1| hypothetical protein bcere0028_9180 [Bacillus cereus AH1271] Length = 149 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQHDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|251797962|ref|YP_003012693.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247545588|gb|ACT02607.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 187 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRIRL R +Q+++ G T + K E G + L I+ L +S Sbjct: 1 MELGKRIRLIRKEQKRTQDEVSAACGFTKSMLSKIENGSTMPAVATLMKIASALGVKVSD 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 + SP + + + Sbjct: 61 LLEPSPKSGTVYINASDYQE 80 >gi|146296435|ref|YP_001180206.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410011|gb|ABP67015.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 103 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 16/119 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK+I+ R SQEKL GI+ + E+G+ + L +I L + Sbjct: 1 MEVGKKIKELRKQKKWSQEKLAAEAGISQSALSAIERGIKQPTVETLNNICNALNITLVD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF T +P L+L ++ + K+ + I + +R + ++ Sbjct: 61 FFSEEKTEL---------------SPALLELINVASKMPENKL-KLISDFIRGLSENDD 103 >gi|330822028|ref|YP_004350890.1| Transcriptional regulator, XRE family protein [Burkholderia gladioli BSR3] gi|327374023|gb|AEA65378.1| Transcriptional regulator, XRE family protein [Burkholderia gladioli BSR3] Length = 191 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 6/110 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R L ++ +++ GI+ + + E+G L I+ L + +F Sbjct: 14 AIGGRIRALRQRLKLTLDEVAVMAGISKPFLSQVERGRATPSLQSLVGIARALGVSMQYF 73 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + S +E F + F ++ +++ ++ Sbjct: 74 VEAPTEAKSVRRAETLQFFSFADS------ANSFARLTSQMDSRQLDAVL 117 >gi|313116082|ref|ZP_07801505.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310621588|gb|EFQ05120.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 120 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 20/138 (14%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ +PN +G+++R R + G++QE+L E ++ + + EKG L Sbjct: 1 MM----MPNSDLKVLGEKVRTERKLAGLTQEQLAERCHVSTKHIANIEKGSMNPSYEILL 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+ VL + + NR ++ VR+ ++ Sbjct: 57 AIARVLPVSLDALITPGMDKTEIELK---------------EFNRIYLSCP-EAVRETLM 100 Query: 121 ELVRSIVSSEKKYRTIEE 138 + R++ ++ + E Sbjct: 101 DSTRTLAKHLTEFYSKIE 118 >gi|291548332|emb|CBL21440.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 242 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 1/111 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG++IR R M+ + L + + + + KYE G V L IS++L+ +S Sbjct: 7 YVGEQIRKYRKAGKMTLQDLADAIHKSRATICKYENGDISVDIETLYEISQILQVSMSQL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P + S +L YF + + +I++ Sbjct: 67 TTGLPETAIE-PSNAPGKGQKSPFFQAQRLYFYFYDGRYQRTKDGVIDIYE 116 >gi|160895181|ref|ZP_02075954.1| hypothetical protein CLOL250_02741 [Clostridium sp. L2-50] gi|156863215|gb|EDO56646.1| hypothetical protein CLOL250_02741 [Clostridium sp. L2-50] Length = 101 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 5/97 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +RIR R ++G++Q L L I+ V ++ G ++ L +++ + Sbjct: 3 MDISERIRELREVIGITQSNLASALNISRSAVNAWKMGTSKPSIDTLVDLADFFHVSTDY 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + +IS +D I L+L YF Sbjct: 63 LLGRNELQLIEISGVSPEGVDII-----LRLVHYFSA 94 >gi|300724595|ref|YP_003713920.1| Repressor of flagellae, MrxJ [Xenorhabdus nematophila ATCC 19061] gi|22094605|gb|AAM91936.1|AF525420_7 putative repressor of flagellae [Xenorhabdus nematophila] gi|297631137|emb|CBJ91828.1| Repressor of flagellae, MrxJ [Xenorhabdus nematophila ATCC 19061] Length = 91 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 41/66 (62%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V + VGKRI+++R G++ +L + +G++ QQ+ +YE+G N++ L IS L +P Sbjct: 3 VSMLVGKRIQIKRKETGVTAAELADKIGVSHQQLSRYERGTNKISLEHLVAISIALNTPA 62 Query: 71 SFFFDV 76 +F + Sbjct: 63 DWFLED 68 >gi|332076616|gb|EGI87078.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] Length = 288 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ RR L MSQ +L E + Q+ + E G GA L +++ L+ + +FFD Sbjct: 8 RLKNRRKELKMSQRELAEGI-CKQGQISRLESGEFTPGADFLHALAKKLKVSMDYFFDEQ 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + SE + T + +Y ++++VK + Sbjct: 67 VVEKVEELSEFKKLAQTFITNRNYESLKYIYELENVKAHR 106 >gi|293399898|ref|ZP_06644044.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306298|gb|EFE47541.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 135 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 31/77 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R+ G++QE + E + +T Q + +E + + +S + + Sbjct: 1 MKIGVKLKEARLQAGLTQENVAEEIQVTRQTISNWETEKSFPDIVSVIKLSTLYNISLDK 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + N Sbjct: 61 LLKGDEEMIEHLEKSTN 77 >gi|167749402|ref|ZP_02421529.1| hypothetical protein EUBSIR_00356 [Eubacterium siraeum DSM 15702] gi|167657574|gb|EDS01704.1| hypothetical protein EUBSIR_00356 [Eubacterium siraeum DSM 15702] Length = 124 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 32/93 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+R++ R+ GM+QE+L E + +T + YE + I+ V + Sbjct: 20 VKFGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTDY 79 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + + D L + Sbjct: 80 LLGLEDKRSRTLDISGLCEEDIRFLQSAAALLK 112 >gi|154484069|ref|ZP_02026517.1| hypothetical protein EUBVEN_01780 [Eubacterium ventriosum ATCC 27560] gi|149735111|gb|EDM50997.1| hypothetical protein EUBVEN_01780 [Eubacterium ventriosum ATCC 27560] Length = 177 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 42/90 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I+ R++ G++QE+L + +T + + E+ + L I + L + + Sbjct: 1 MDIGKKIKELRILKGLTQEELADRAELTKGFISQVERNHTSPSIATLVDILQCLGTDLKN 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 FF+ S E+ + + +Q Sbjct: 61 FFEDDEDNQIVFSKEDYFEKEDKELKNMIQ 90 >gi|190015615|ref|YP_001967308.1| DNA-binding protein [Bacillus cereus] gi|208702197|ref|YP_002267329.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217956829|ref|YP_002335923.1| DNA-binding protein [Bacillus cereus AH187] gi|229142393|ref|ZP_04270907.1| hypothetical protein bcere0013_54700 [Bacillus cereus BDRD-ST26] gi|116584522|gb|ABK00639.1| DNA-binding protein [Bacillus cereus] gi|208658052|gb|ACI30422.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217068601|gb|ACJ82849.1| DNA-binding protein [Bacillus cereus AH187] gi|228641058|gb|EEK97375.1| hypothetical protein bcere0013_54700 [Bacillus cereus BDRD-ST26] Length = 108 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 33/90 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ KR+ R G +Q + L I +E G A + I+E+ I Sbjct: 3 HLSKRLAELRKKRGYTQADISHRLNIARTTYANWEYGKADPDADSIMRIAELHNIFIDEL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQL 103 F + + S + S + + D + L Sbjct: 63 FGRNNPLESKLESIKVALADIPAEKQQEAL 92 >gi|20808515|ref|NP_623686.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi|20517137|gb|AAM25290.1| predicted Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] Length = 144 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 5/98 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R+ GM+QE+ G+ G+T + YE + I+E + + Sbjct: 4 LGERIKQLRLEHGMTQEEFGKLFGVTKYSISLYESNKTSPSDEIKKKIAEYFNVSMDWLM 63 Query: 75 DVSPTVCSDISSEENNVM-----DFISTPDGLQLNRYF 107 ++ I D + + +Q F Sbjct: 64 GLTDVRKPFIPENYKEKYKITKRDMLQYENFIQHVNAF 101 >gi|327459409|gb|EGF05755.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1] Length = 205 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 E++ I++ QL+ F Sbjct: 61 LLKG-IESVVQKEEEQSIKYRRIASNICYQLSLGF 94 >gi|324990276|gb|EGC22214.1| XRE family transcriptional regulator [Streptococcus sanguinis SK353] Length = 205 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 1/95 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 E++ I++ QL+ F Sbjct: 61 LLKG-IESVVQKEEEQSIKYRRIASNICYQLSLGF 94 >gi|292557937|gb|ADE30938.1| Transcriptional regulator, Cro/CI family [Streptococcus suis GZ1] Length = 190 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLE 67 + + + G++++ R LGMSQ++L +G+T + + YE +R ++E L Sbjct: 51 SEITMTFGEKVKAERTKLGMSQDELAAKIGVTRRIIGSYENDKSRPRGMERYKKLAESLN 110 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIELVRS 125 +++ +D+ + + ++ F ++ D +R+ + + + Sbjct: 111 VNVNYLLSEDDAFIADVEDKYGRRGARQAQELLAEVTGLFAGGEMADEDMREMVDAIQEA 170 Query: 126 IVSSEKKYRTI 136 + ++K + Sbjct: 171 YLIAKKNNKKY 181 >gi|257065284|ref|YP_003144956.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792937|gb|ACV23607.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 200 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++++ R ++QE+L E L ++ V K+E G L+ +S I Sbjct: 1 MEFGEKLQELRKARSLTQEQLAEALYVSRTAVSKWESGRGYPSIDSLKEVSRFFSVTIDE 60 Query: 73 FFDVSP 78 Sbjct: 61 LISPDE 66 >gi|255103138|ref|ZP_05332115.1| XRE family transcriptional regulator [Clostridium difficile QCD-63q42] gi|255308330|ref|ZP_05352501.1| XRE family transcriptional regulator [Clostridium difficile ATCC 43255] Length = 121 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 46/117 (39%), Gaps = 1/117 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++Q++L LG+T + + YEK + +S+ + Sbjct: 1 MIGYRIKELRKEKDITQKELATFLGLTPKMISFYEKEERFPPHDIILKLSDFFNVSTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 D SE + + + D + + ++ ++K+ ++ + + E Sbjct: 61 LGKVNVKNIDNLSELELIENLNFSDDIKEALKLISEL-SPSSQEKMFKIAKVFLEEE 116 >gi|183597904|ref|ZP_02959397.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC 25827] gi|188022666|gb|EDU60706.1| hypothetical protein PROSTU_01240 [Providencia stuartii ATCC 25827] Length = 119 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VGK I R G++ ++L + L ++ QQ+ +YE+GV + L I L +S Sbjct: 14 IAVGKEIFRLRKKRGLTGKQLAKKLNVSQQQISRYERGVCNINVDTLFVILHELGCSLSN 73 Query: 73 FFD 75 FF Sbjct: 74 FFS 76 >gi|168183950|ref|ZP_02618614.1| transcriptional regulator [Clostridium botulinum Bf] gi|182672974|gb|EDT84935.1| transcriptional regulator [Clostridium botulinum Bf] Length = 92 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R ++QE+LG+ L ++ Q V YEKG N L I+ + + + Sbjct: 3 GDRLRELREEKQLTQEELGKLLNVSRQAVSSYEKGENEPTIDALVKIANIFNVSLDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDFIS 96 + + ++ N + Sbjct: 63 RTKERYNLNLKDKKNKELLLD 83 >gi|94499248|ref|ZP_01305786.1| transcriptional regulator, Cro/CI family protein [Oceanobacter sp. RED65] gi|94428880|gb|EAT13852.1| transcriptional regulator, Cro/CI family protein [Oceanobacter sp. RED65] Length = 182 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 45/114 (39%), Gaps = 4/114 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R++ R G+SQ +L + G+T + EK S L+ + + ++ Sbjct: 1 MDVGTRLKEVRKKSGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLGGIPLSLTE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 FF+ T + S+ + ++ F I + + LV + Sbjct: 61 FFETEDTSQTATPVVYPAEEFLDSSVESVE----FKLIGKDFHNRAMTFLVECL 110 >gi|159184228|ref|NP_353276.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139556|gb|AAK86061.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 193 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 2/93 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + ++ ++G+RI++ R G++ E+L G++ + + E+G AS L Sbjct: 1 MMETEDRI--LERSIGERIKVLRAESGLTLERLASESGVSRAMISRIERGEASPTASLLA 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 I L +S FF + S + + + + Sbjct: 59 RICAALGLSLSGFFAENEEAVSPLVKKRDQQLW 91 >gi|6010627|gb|AAF01192.1|AF179401_1 putative epoxidase [Sinorhizobium meliloti] Length = 176 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 36/110 (32%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R+ + +L G++ + K E+G L I+ V + F Sbjct: 14 AIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFGVGLDHF 73 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F+ + + S P F +D +++ Sbjct: 74 FNADKEEPLIAIVRKEQRLKLPSPPGEKHPAFLFESLDYPASDRRMEAFY 123 >gi|15900927|ref|NP_345531.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae TIGR4] gi|237650284|ref|ZP_04524536.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae CCRI 1974] gi|237822126|ref|ZP_04597971.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae CCRI 1974M2] gi|14972531|gb|AAK75171.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae TIGR4] Length = 288 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 12/135 (8%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ RR L MSQ +L E + Q+ + E G GA L +++ L+ + +FFD Sbjct: 8 RLKNRRKELKMSQRELAEGI-CKQGQISRLESGEFTPGADFLHALAKKLKVSMDYFFDEQ 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK------IIELVRSI----- 126 + SE + T + +Y ++++VK + +E ++S+ Sbjct: 67 VVEEVNELSEFKKLAQTFITNRNYESLKYIYELENVKAHRLSLADKFYMEWIKSLIDFYF 126 Query: 127 VSSEKKYRTIEEECM 141 +++ T E + Sbjct: 127 YGQKEEAITRLENML 141 >gi|56419027|ref|YP_146345.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] gi|56378869|dbj|BAD74777.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] Length = 121 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 41/119 (34%), Gaps = 6/119 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+R R + M+Q+ L + + + YE+ ++ +++ + Sbjct: 4 GKRLRFLRKKMNMTQKDLADKFSLGESTIGMYERDEREPSFEFVRQLADFFNVTTDYLLG 63 Query: 76 VSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + + D +L + R++++++ + S + Sbjct: 64 RTDHPNPSEQDDIPEELKDPELGLFFKELAEA-----PEERREQLLKIWEILKSEGDRK 117 >gi|312866496|ref|ZP_07726714.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098190|gb|EFQ56416.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 230 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 46/113 (40%), Gaps = 3/113 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR LG+SQ + LGI+ +E G + +S++L+ S+F Sbjct: 5 EKLKNRRKELGLSQADVARQLGISRPSYFNWENGKTKPNQKNWTKLSKILQVNPSYFLSE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI-IELVRSIVS 128 V + + ++N + +L ++ R+ ++ + + Sbjct: 65 YEIVETYVQLNKSNKKKTVD--FANRLLAEQGKMRSEAGRKLYAYKVYERLSA 115 >gi|317057522|ref|YP_004105989.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449791|gb|ADU23355.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 135 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 5/119 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G ++ R +G SQE L + L ++ Q V K+E G + A ++ IS F Sbjct: 1 MNIGDKLLFLRNRVGCSQETLADALDVSRQTVSKWELGQSLPDAEKIVAISNYFNVTTDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-----DVKVRQKIIELVRSI 126 + V + + + + S D Q++R + I D + R ++ E+V+++ Sbjct: 61 LLRDTSPVKIEKNLDRIVIEFANSAADLDQISRALVDIARDGIIDEEERLRLFEMVKTV 119 >gi|302555556|ref|ZP_07307898.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] gi|302473174|gb|EFL36267.1| DNA-binding protein [Streptomyces viridochromogenes DSM 40736] Length = 191 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 3/113 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + VD +G R+ R G S +L E G++ + + E+ A+ L + V Sbjct: 8 DAVDTRLGARLAELRAEHGWSLGELAERSGVSRSTLSRAERAETSPTAALLNRLCAVYGR 67 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 +S + + + + T R + +R +++E Sbjct: 68 TMSQLLSEVEAEPAPVMRAPDQPVWQDRTSG---FVRRSVSPPHPALRGELVE 117 >gi|228992527|ref|ZP_04152454.1| Transcriptional regulator, XRE [Bacillus pseudomycoides DSM 12442] gi|229006074|ref|ZP_04163762.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4] gi|228755150|gb|EEM04507.1| Transcriptional regulator, XRE [Bacillus mycoides Rock1-4] gi|228767161|gb|EEM15797.1| Transcriptional regulator, XRE [Bacillus pseudomycoides DSM 12442] Length = 123 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 8/123 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ +R R ++ ++LG+ L + + YE G + L ++ E + Sbjct: 1 MIGENLRKLRKTNNLTMKELGQKLNLAESTISGYENGNRKPDYDTLNKFADFFEVSTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSEK 131 + ++ + + ++ P L +F I D ++++ + I S EK Sbjct: 61 L---GRDITKNTTRDTYTYNPLTDP---DLGLWFKDIKDASPDKQEELKQFWEFIKSKEK 114 Query: 132 KYR 134 + Sbjct: 115 NRK 117 >gi|134292421|ref|YP_001116157.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135578|gb|ABO56692.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia vietnamiensis G4] Length = 193 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 11/146 (7%) Query: 1 MVGNKKIPNPVDI--NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 MV + P VD +G +IR R L + + GI+ + + E+G+ + Sbjct: 1 MVPPTENPRSVDAPAALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTS 60 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 L I++ L + +F D S E+ F + F ++ +V ++ Sbjct: 61 LAGIAQALGVTVQYFVDTPSEERSVCRGEQLRFFGFADS------ANLFARLTNVTEGRQ 114 Query: 119 IIELVRSIVSSEKKYR---TIEEECM 141 + ++ + +K+ EE + Sbjct: 115 LEAILVRMPPGQKRSEVTTHAGEEFL 140 >gi|253987940|ref|YP_003039296.1| transcription regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779390|emb|CAQ82551.1| similar to transcription regulator and to restriction enzyme control elements [Photorhabdus asymbiotica] Length = 78 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN + G+R+R RM GMSQE + G+ + E+GV + I+ Sbjct: 2 KKPNNIKSLFGQRVRYIRMASGMSQEAFADRCGLDRTYISGIERGVRNPTLEVINVIASG 61 Query: 66 LESPISFFFDVSPTVC 81 L+ + FD S + Sbjct: 62 LQIELKDLFDFSSSQK 77 >gi|251790166|ref|YP_003004887.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538787|gb|ACT07408.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 76 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + V +G+R++ R+ G+SQE E G+ + E+GV L ++ Sbjct: 2 KTSDSVKTLLGQRVKALRLQAGLSQEAFAEKCGLDRTYISGIERGVRNPTLEVLYILAAG 61 Query: 66 LESPISFFF 74 L + ++ F Sbjct: 62 LHTDLTTLF 70 >gi|169796192|ref|YP_001713985.1| putative transcriptional regulator [Acinetobacter baumannii AYE] gi|213157074|ref|YP_002319119.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|215483646|ref|YP_002325867.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|301347624|ref|ZP_07228365.1| Helix-turn-helix family protein [Acinetobacter baumannii AB056] gi|301510309|ref|ZP_07235546.1| Helix-turn-helix family protein [Acinetobacter baumannii AB058] gi|301596869|ref|ZP_07241877.1| Helix-turn-helix family protein [Acinetobacter baumannii AB059] gi|332850551|ref|ZP_08432827.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332865761|ref|ZP_08436556.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|169149119|emb|CAM86996.1| putative transcriptional regulator [Acinetobacter baumannii AYE] gi|213056234|gb|ACJ41136.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|213985862|gb|ACJ56161.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|332730613|gb|EGJ61927.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332735102|gb|EGJ66186.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] Length = 197 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 4/92 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++I + RIR R+ G + + L ++ + E+G A L+ ++ LE Sbjct: 2 DDINIRIAHRIRELRLARGYTLDVLAARCQVSRSAISLIERGETSPTAVVLEKLANGLEV 61 Query: 69 PISFFFDVSPTVCSDIS----SEENNVMDFIS 96 P++ F S +E+ D + Sbjct: 62 PLTQIFTNEAGNSSSQPLIRRNEQAEWRDPET 93 >gi|160938794|ref|ZP_02086145.1| hypothetical protein CLOBOL_03688 [Clostridium bolteae ATCC BAA-613] gi|158437757|gb|EDP15517.1| hypothetical protein CLOBOL_03688 [Clostridium bolteae ATCC BAA-613] Length = 230 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VGK I R GMSQE+L + + +T Q V +E G ++ L+ ++ + I Sbjct: 12 VGKNIVKLRKEQGMSQEQLAQKIHVTRQAVSNWETGRSQPDLDMLETLASAFGTDI 67 >gi|91779338|ref|YP_554546.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|296157048|ref|ZP_06839885.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|91691998|gb|ABE35196.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia xenovorans LB400] gi|295892934|gb|EFG72715.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 190 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 10/144 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV + NP + +G +IR R L + + GI+ + + E+G+ + L Sbjct: 1 MVTTIQKSNP-ALEIGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLA 59 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+ L + +F D ++ F + F ++ +V +++ Sbjct: 60 GIANALGVTVQYFVDTPSEERCVSRGDQLRFFGFADS------ANLFARLTNVTGGRQLE 113 Query: 121 ELVRSIVSSEKKYR---TIEEECM 141 ++ + +K+ EE M Sbjct: 114 AILVRMPPGQKRSEVTTHAGEEFM 137 >gi|323492807|ref|ZP_08097949.1| DNA-binding transcriptional repressor PuuR [Vibrio brasiliensis LMG 20546] gi|323312878|gb|EGA66000.1| DNA-binding transcriptional repressor PuuR [Vibrio brasiliensis LMG 20546] Length = 185 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 30/73 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +GK I R G+SQ +L E GIT + E G S LQ I V +S Sbjct: 3 NQEIGKNIVQLRKQHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLS 62 Query: 72 FFFDVSPTVCSDI 84 FF ++ Sbjct: 63 EFFTFEKPQSDEV 75 >gi|306826019|ref|ZP_07459355.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431735|gb|EFM34715.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 166 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 32/81 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 2 MKLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDY 61 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + D Sbjct: 62 LLLDENSEKGSTEVSLEEDKD 82 >gi|293376903|ref|ZP_06623120.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292644449|gb|EFF62542.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 192 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 37/76 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G+SQE+L E L ++ Q V K+E LQ I+++ + Sbjct: 3 MTLGEKIKKYRQAGGLSQEQLSEKLSVSRQAVTKWESDKGIPDIHNLQAIAKLFNVSLDS 62 Query: 73 FFDVSPTVCSDISSEE 88 + + S + EE Sbjct: 63 LLAMDEKIGSIVLKEE 78 >gi|302544943|ref|ZP_07297285.1| putative DNA-binding protein [Streptomyces hygroscopicus ATCC 53653] gi|302462561|gb|EFL25654.1| putative DNA-binding protein [Streptomyces himastatinicus ATCC 53653] Length = 397 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 5/114 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLES 68 P D ++G R+R R G+SQ L ++ ++K E+G H++ L Sbjct: 2 PDDAHIGARLRTIRKRRGLSQRDLAAASDVSLSLIRKLEQGEIADTRMETAHHLAVALRV 61 Query: 69 PISFFFDVSPTVCSDISSEENNV----MDFISTPDGLQLNRYFIQIDDVKVRQK 118 P S + +D ++EE + ++ G ++ +VR+ Sbjct: 62 PTSSLLERDDEEPADETAEEWRPLRAAVQIAASRTGEAPTVDGVRALLPEVREA 115 >gi|257876621|ref|ZP_05656274.1| predicted protein [Enterococcus casseliflavus EC20] gi|257810787|gb|EEV39607.1| predicted protein [Enterococcus casseliflavus EC20] Length = 207 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR RR LGM+QE+L + L ++ + +E G N + L ++++ + + F Sbjct: 7 IRERRKQLGMTQEELAKELNVSRSAISNWEIGRNYPDITTLIELAQMYQVSLDELFYDDI 66 Query: 79 TVCSDISSEENNVMD 93 + + + + Sbjct: 67 DLVNKFAEDNKKKEQ 81 >gi|317120863|ref|YP_004100866.1| hypothetical protein Tmar_0014 [Thermaerobacter marianensis DSM 12885] gi|315590843|gb|ADU50139.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM 12885] Length = 131 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 46/110 (41%), Gaps = 9/110 (8%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R G++Q +L +G++ Q + YE G + +Q ++ VL + IS+ + Sbjct: 6 RLRKMREARGLTQRELATAIGVSRQAIGLYEAGEREPDLTTIQKLAHVLRTSISYLVGET 65 Query: 78 PTVCS------DISSEENNVMDFISTPDGLQLNRYFIQID---DVKVRQK 118 E + D + L + R F +I + K RQ+ Sbjct: 66 DDPSPLPRSGVAAHREGTDPGDPLDPEVQLIMERAFREISRKLEEKWRQR 115 >gi|307308819|ref|ZP_07588507.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|306900624|gb|EFN31236.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 472 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 8/128 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R ++Q + E +GI+ + + E V A+ L ++E + I+ Sbjct: 6 LYIGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIAE 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 SE + F + LQ + Q L +++S + Sbjct: 66 LSSGESDRLLSALSEALSDPLFETYSPSLQELKLVAQNAP--------GLAHALISCHQA 117 Query: 133 YRTIEEEC 140 YR E+ Sbjct: 118 YRRNSEQL 125 >gi|146318119|ref|YP_001197831.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146320301|ref|YP_001200012.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|253753209|ref|YP_003026349.1| DNA-binding protein [Streptococcus suis P1/7] gi|253755032|ref|YP_003028172.1| DNA-binding protein [Streptococcus suis BM407] gi|145688925|gb|ABP89431.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|145691107|gb|ABP91612.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|251817496|emb|CAZ55238.1| putative DNA-binding protein [Streptococcus suis BM407] gi|251819454|emb|CAR44956.1| putative DNA-binding protein [Streptococcus suis P1/7] gi|292557878|gb|ADE30879.1| transcriptional regulator [Streptococcus suis GZ1] gi|319757590|gb|ADV69532.1| transcriptional regulator [Streptococcus suis JS14] Length = 384 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 17/135 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R++ G+++ L L +T Q + ++E GV ++ + + +F Sbjct: 4 GSRLEELRLLNGLTRADLARELEVTEQAIWQFETGVTLPKMKNKIAMARFFQVEVDYFDA 63 Query: 76 VSPTVCSDISSEENNVMDFISTP-------------DGLQLNRYFIQIDDVKVRQKIIEL 122 V +S D + + F+ I + Q I +L Sbjct: 64 VDKNGSFSLSRIAFRNADLEAKKNIHIQMVYLEKMNQMIDYLENFVSIPN----QIIYQL 119 Query: 123 VRSIVSSEKKYRTIE 137 V SI +++ ++E Sbjct: 120 VDSIEQKLQQHESLE 134 >gi|84515360|ref|ZP_01002722.1| transcriptional regulator, XRE family [Loktanella vestfoldensis SKA53] gi|84510643|gb|EAQ07098.1| transcriptional regulator, XRE family [Loktanella vestfoldensis SKA53] Length = 130 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 11/124 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G+SQ+ L + LG+ F + +E A+RLQ ++ +L + + Sbjct: 17 GDRLAGAREAAGLSQKDLAKSLGVKFATLVSWENDTGEPRANRLQMLAGMLGVSLGWLMT 76 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + L + ++ R ++++ + + EK+ +T Sbjct: 77 GLGDGLAAPDDATEIPANVAV------LMQEMRRL-----RAQMVQTLDKMGQVEKQLQT 125 Query: 136 IEEE 139 Sbjct: 126 ALRR 129 >gi|322388880|ref|ZP_08062472.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140263|gb|EFX35776.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 228 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 59/128 (46%), Gaps = 27/128 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ E LGI+FQ +E+GV +++ + E+L+ P +F Sbjct: 5 EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGVKEPSKEKVKQLEEILKVPKGYF--- 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK-KYRT 135 +++ R + + + K ++K++ R++ E+ K T Sbjct: 62 ----------------------TQIEIVRLYNSLSN-KGKEKVVVYARNLAQEEQAKKVT 98 Query: 136 IEEECMVE 143 E + E Sbjct: 99 AISEKLYE 106 >gi|296504134|ref|YP_003665834.1| transcriptional repressor [Bacillus thuringiensis BMB171] gi|296325186|gb|ADH08114.1| transcriptional repressor [Bacillus thuringiensis BMB171] Length = 262 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSDISS 86 + ++ + Sbjct: 64 ETAEQSNEKEN 74 >gi|209521228|ref|ZP_03269950.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209498341|gb|EDZ98474.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 195 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 4/115 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +RIR R S + L E ++ + E+G + A+ L ++ L P Sbjct: 2 DINTLIARRIRELRDAQAWSLDALAERSKVSRSNISLIERGQSSPTATVLDKLATALNVP 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 ++ F+ ++ S + T R + R I +LV Sbjct: 62 LASLFEQDGAPAAEPSPVSRAAEQAVWTDPSSGYVR---RHLSPTARSAI-QLVE 112 >gi|160916303|ref|ZP_02078510.1| hypothetical protein EUBDOL_02334 [Eubacterium dolichum DSM 3991] gi|158432027|gb|EDP10316.1| hypothetical protein EUBDOL_02334 [Eubacterium dolichum DSM 3991] Length = 258 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 32/74 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I R G+SQE L E +G T Q + K+E +L +S + E + Sbjct: 1 MSLGEKIFKLRKEKGLSQEALAEQVGTTRQAISKWENDQGFPETEKLLRLSNIFEVSTDY 60 Query: 73 FFDVSPTVCSDISS 86 TV Sbjct: 61 LLKDEKTVKDSEEH 74 >gi|153813367|ref|ZP_01966035.1| hypothetical protein RUMOBE_03786 [Ruminococcus obeum ATCC 29174] gi|149830544|gb|EDM85635.1| hypothetical protein RUMOBE_03786 [Ruminococcus obeum ATCC 29174] Length = 84 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 5/73 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGEC-----LGITFQQVQKYEKGVNRVGASRLQHISEVL 66 D+ +GK +R R G+SQEKL I KYE G + S L + ++ Sbjct: 11 DVYIGKNLRRLREKFGLSQEKLCAELQCRNCDIGRSTYAKYENGELNIRISVLMELKKIY 70 Query: 67 ESPISFFFDVSPT 79 FFD + Sbjct: 71 NCSYDEFFDDLDS 83 >gi|76787968|ref|YP_330681.1| prophage Sa05, DNA-binding protein [Streptococcus agalactiae A909] gi|77406878|ref|ZP_00783904.1| Helix-turn-helix domain protein [Streptococcus agalactiae H36B] gi|76563025|gb|ABA45609.1| prophage Sa05, DNA-binding protein [Streptococcus agalactiae A909] gi|77174510|gb|EAO77353.1| Helix-turn-helix domain protein [Streptococcus agalactiae H36B] Length = 204 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 39/98 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++QE+L +G++ + ++E G ++ + + +++ + + Sbjct: 2 NRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKPDKAKELAKYFNVSVGYLLGY 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +P D + ++ L L I +K Sbjct: 62 APNKKIDFQLNLDGTTLHLTKEQFLALENTSKSIKKIK 99 >gi|295134500|ref|YP_003585176.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] gi|294982515|gb|ADF52980.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] Length = 134 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 4/131 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R + GM QE L E LGI+ Q V + E+ + +L +++ L Sbjct: 8 HIGRKISRIRELRGMKQETLAEELGISQQSVSQMEQNE-NLEDEKLDKVAKALGVSKEAI 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + S +I +V + + G N I+ KI EL + ++ +EK+ Sbjct: 67 KNFSEEAILNIIGNTYHVDNSSAVNYGCTFNPIDKIIEQS---DKIEELYKKLLEAEKEK 123 Query: 134 RTIEEECMVEQ 144 E + ++ Sbjct: 124 VAYLERLLDKK 134 >gi|163938942|ref|YP_001643826.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861139|gb|ABY42198.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 149 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|295094077|emb|CBK83168.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 189 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R ++QE+L E G+T + V ++E G N S L +++ + I D Sbjct: 7 GSFLRELRKEKQLTQEQLAERFGVTSRSVSRWETGSNMPDLSILVELADFYDVDIRDIID 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 D++ EE + ++ + N +++ Sbjct: 67 G-ERKGEDMNKEEKERLQLVADYAETEKNTLLMRL 100 >gi|291543170|emb|CBL16280.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 164 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 33/79 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I R G++QEKLGE +G+T + + +E G LQ +++ I+ Sbjct: 4 IKIGKFIATLRRQSGLTQEKLGEKIGVTNKTISPWENGNYMPDIEMLQLLAKEFNVSINE 63 Query: 73 FFDVSPTVCSDISSEENNV 91 + + Sbjct: 64 LLAGQKMSDEEFRKNADEN 82 >gi|210617016|ref|ZP_03291351.1| hypothetical protein CLONEX_03573 [Clostridium nexile DSM 1787] gi|210149539|gb|EEA80548.1| hypothetical protein CLONEX_03573 [Clostridium nexile DSM 1787] Length = 163 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 53/129 (41%), Gaps = 11/129 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G I+ R G+SQ+++ + L I + YE A ++ +S++LE Sbjct: 7 IQIGSTIKELRKAKGISQKEMSKLLDIPYSTYSNYENNNREPSADVIKKVSDILEISTDS 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG----------LQLNRYFIQIDDVKVRQKIIEL 122 + + T E + ++ ++L +YF ++ + + + K I+ Sbjct: 67 LIETAKTKSKTFIDEIDMYVEKFQKDIAERGYNREMGDIELLKYFRKL-NYEGQDKAIDY 125 Query: 123 VRSIVSSEK 131 + + S K Sbjct: 126 TKLLSESPK 134 >gi|89074743|ref|ZP_01161201.1| Hypothetical transcriptional regulator [Photobacterium sp. SKA34] gi|89049507|gb|EAR55068.1| Hypothetical transcriptional regulator [Photobacterium sp. SKA34] Length = 130 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 42/111 (37%), Gaps = 6/111 (5%) Query: 1 MVGNKKIPNPVD------INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 M+ + ++ ++ ++IR R G++Q + + LG+ Q E G Sbjct: 3 MMSEHSVEREINNAMTEIAHIAQKIREAREWKGITQVSMAKQLGVARQTYLDLESGKTEP 62 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 L +I+++ + +F T + + + + +P ++ Sbjct: 63 RVLMLMNIAKITGRSLHWFISDDNTPEYGDINRLSVMYAQVPSPLRQKMIE 113 >gi|317501737|ref|ZP_07959924.1| hypothetical protein HMPREF1026_01868 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896859|gb|EFV18943.1| hypothetical protein HMPREF1026_01868 [Lachnospiraceae bacterium 8_1_57FAA] Length = 177 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 39/80 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VGK+IR R G SQ +L E GI ++KYE G+ +L+ I+ L +S F Sbjct: 1 MVGKKIRAYREFRGYSQIQLAELSGINVGTIRKYELGIRNPKPDQLEKIATALGLNVSVF 60 Query: 74 FDVSPTVCSDISSEENNVMD 93 D + D+ S ++ D Sbjct: 61 LDFNIETVGDVLSLLFSIDD 80 >gi|255324218|ref|ZP_05365340.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141] gi|255298734|gb|EET78029.1| DNA-binding protein [Corynebacterium tuberculostearicum SK141] Length = 492 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 10/128 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+EV +FF Sbjct: 28 YVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVDATFF 87 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + +P L +L+ + R++V ++ Sbjct: 88 SRDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPT---------VARTLVDVHRR 138 Query: 133 YRTIEEEC 140 YR + ++ Sbjct: 139 YRNVRDKL 146 >gi|228952237|ref|ZP_04114326.1| hypothetical protein bthur0006_16440 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807365|gb|EEM53895.1| hypothetical protein bthur0006_16440 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 146 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R G SQE + + +G+T Q + K+E + L +SE+ + Sbjct: 1 MNLGEQLKKLRESKGFSQEDVAKKIGVTRQAIYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENN 90 + I S+ + Sbjct: 61 LIKGNQDFKKKIHSDAED 78 >gi|254284054|ref|ZP_04959022.1| transcriptional regulator, XRE family [gamma proteobacterium NOR51-B] gi|219680257|gb|EED36606.1| transcriptional regulator, XRE family [gamma proteobacterium NOR51-B] Length = 219 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D ++G IR R GM+ +L + ++ + + E+G++ L IS L IS Sbjct: 35 DRSLGLDIRDLRKARGMTLSELSKISELSQGYLSQVERGISVPSIKALHSISRALGVTIS 94 Query: 72 FFF 74 +FF Sbjct: 95 WFF 97 >gi|289551818|ref|YP_003472722.1| Transcriptional regulator, XRE family [Staphylococcus lugdunensis HKU09-01] gi|315660010|ref|ZP_07912868.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] gi|289181349|gb|ADC88594.1| Transcriptional regulator, XRE family [Staphylococcus lugdunensis HKU09-01] gi|315494911|gb|EFU83248.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 190 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVG++++ R+ G SQE L E L ++ Q + +E + L + + + Sbjct: 2 INVGQQLKKYRIQQGYSQEVLAEKLYVSRQTISNWENNKSLPDIHNLLMMCSLFNVSLDD 61 Query: 73 FFDVS 77 Sbjct: 62 LVKGD 66 >gi|152988924|ref|YP_001351041.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150964082|gb|ABR86107.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 199 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 9/124 (7%) Query: 2 VGNKKIPNPVDI------NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 + P+ D +G RIR R G++ L +T + + E+ + Sbjct: 1 MPRPSTPDATDTPRSETHFLGTRIRGLRKRRGLTLAALAAQSELTAGYISQLERNLAYPS 60 Query: 56 ASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 L +I+ L I +FF V + +S + ++ + Sbjct: 61 IPALFNIARSLGVTIQWFFASEAAVDPADAGYVVRRNTRMSVHYEDGII---DELLSPQP 117 Query: 116 RQKI 119 +++ Sbjct: 118 SRQL 121 >gi|291558136|emb|CBL35253.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 106 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 32/93 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+R++ R+ GM+QE+L E + +T + YE + I+ V + Sbjct: 2 VKFGERVKQLRLSAGMTQEQLAERIWVTKAAISNYELSERNPSPETIIKIAGVFGVTTDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + + D L + Sbjct: 62 LLGLEDKRSRTLDISGLCEEDIRFLQSAAALLK 94 >gi|229197740|ref|ZP_04324459.1| Helix-turn-helix domain protein [Bacillus cereus m1293] gi|228585685|gb|EEK43784.1| Helix-turn-helix domain protein [Bacillus cereus m1293] Length = 262 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSDISS 86 + ++ Sbjct: 64 ETAEQSNENVD 74 >gi|198282281|ref|YP_002218602.1| XRE family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|198246802|gb|ACH82395.1| transcriptional regulator, XRE family [Acidithiobacillus ferrooxidans ATCC 53993] Length = 152 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 8/138 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R LG++Q +LG+ G++ V ++E G + L + + L + Sbjct: 8 IGDRVKKIRKRLGLTQAELGKHAGGLSKSAVHQWENGGTKPAWDALTALRKNLGINPDWV 67 Query: 74 FDVSPTVCSDISS-------EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + ++ + E R + I D + E +R + Sbjct: 68 MQGEGAMLQELGTPNAATSIESGADALPFDGRGLTPRQRAMLGIFDRLTSSQQDEAMREL 127 Query: 127 VSSEKKYRTIEEECMVEQ 144 +++K I EE + Sbjct: 128 EETKRKNEEIIEELTRRK 145 >gi|254246992|ref|ZP_04940313.1| hypothetical protein BCPG_01768 [Burkholderia cenocepacia PC184] gi|124871768|gb|EAY63484.1| hypothetical protein BCPG_01768 [Burkholderia cenocepacia PC184] Length = 189 Score = 53.3 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 4/106 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + V +R+R R G+SQ +L + G+T + E+G L+ Sbjct: 1 MSETESM----STEVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLK 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + E + ++ FF + S + + + + L Sbjct: 57 KLLECIPMSLAEFFTFELVESRAVVSRRDEMPNLGNESLAFHLVGA 102 >gi|226940913|ref|YP_002795987.1| Transcriptional regulator [Laribacter hongkongensis HLHK9] gi|226715840|gb|ACO74978.1| Transcriptional regulator [Laribacter hongkongensis HLHK9] Length = 262 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 31/101 (30%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G+ P +G R++ R +S+ + +G++ +Q +E G A++L Sbjct: 15 SGSTNKPENERFELGARLKEVRKARNVSRNEAAAAVGVSVSTMQAWEAGEREPDATKLSS 74 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + + + + L Sbjct: 75 FVRHYGVRADWLLFGDGGMFKPAAPTQAESPRSEVDCPCLD 115 >gi|226325615|ref|ZP_03801133.1| hypothetical protein COPCOM_03428 [Coprococcus comes ATCC 27758] gi|225205739|gb|EEG88093.1| hypothetical protein COPCOM_03428 [Coprococcus comes ATCC 27758] Length = 279 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 36/70 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G++QE++ + L ++ V K+EKG S L I+ +L+ ++ Sbjct: 1 MQIGEKIKNYRKTAGLTQEQVADYLDVSTPAVNKWEKGNTYPDISLLPAIARLLKIDMNE 60 Query: 73 FFDVSPTVCS 82 F + Sbjct: 61 LFSFREELTE 70 >gi|146296429|ref|YP_001180200.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410005|gb|ABP67009.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 122 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 40/73 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++++ R G++QE++ + LGI Q+ YE GV + LQ ++++ +++ Sbjct: 8 KRIGQKLQEARKKAGLTQEQVADYLGINKVQLSYYENGVREISIGTLQQLADLYGYTLNY 67 Query: 73 FFDVSPTVCSDIS 85 FFD + +S Sbjct: 68 FFDDEKSTDPAVS 80 >gi|323494352|ref|ZP_08099464.1| transcriptional regulator, XRE family protein [Vibrio brasiliensis LMG 20546] gi|323311515|gb|EGA64667.1| transcriptional regulator, XRE family protein [Vibrio brasiliensis LMG 20546] Length = 180 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 41/94 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VGK+++ R + G+SQ +L + G+T + + E+ + L+ I + + + Sbjct: 1 MDVGKQLKTIRTMRGLSQRELAKRSGVTNSMISQIEQNLVNPSVGSLKKILDAIPISMGE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 FF + DI + + D + L Sbjct: 61 FFTIEIEAKDDIFFTVDQMADLGDGKIKMLLVGA 94 >gi|312794244|ref|YP_004027167.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181384|gb|ADQ41554.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 66 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ R G+SQ+KL + + + E G++ L+ ++ LE P+ F Sbjct: 1 MLGEKIKELRQKKGLSQQKLSKLANVPQSTIWYIENGISSPTLKTLEKLARALEVPVHEF 60 Query: 74 FD 75 D Sbjct: 61 VD 62 >gi|253751308|ref|YP_003024449.1| DNA-binding protein [Streptococcus suis SC84] gi|251815597|emb|CAZ51181.1| putative DNA-binding protein [Streptococcus suis SC84] Length = 384 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 17/135 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R++ G+++ L L +T Q + ++E GV ++ + + +F Sbjct: 4 GSRLEELRLLNGLTRADLARELEVTEQAIWQFETGVTLPKMKNKIAMARFFQVEVDYFDA 63 Query: 76 VSPTVCSDISSEENNVMDFISTP-------------DGLQLNRYFIQIDDVKVRQKIIEL 122 V +S D + + F+ I + Q I +L Sbjct: 64 VDKNGSFSLSRIAFRNADLEAKKNIHIQMVYLEKMNQMIDYLENFVSIPN----QIIYQL 119 Query: 123 VRSIVSSEKKYRTIE 137 V SI +++ ++E Sbjct: 120 VDSIEQKLQQHESLE 134 >gi|225019513|ref|ZP_03708705.1| hypothetical protein CLOSTMETH_03466 [Clostridium methylpentosum DSM 5476] gi|224947734|gb|EEG28943.1| hypothetical protein CLOSTMETH_03466 [Clostridium methylpentosum DSM 5476] Length = 154 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 16/108 (14%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R+ G++Q L + L ++ V +E G + + ++ + + + Sbjct: 49 HRLRQLRLERGLTQAALAKHLDVSQGTVGNWEGGKREPDFATVARLAALFGTTVDDLIGN 108 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 SPT L R I + R+KI+++ Sbjct: 109 SPTKAETKLIL---------------LARKAEHIP-EQEREKILQVFE 140 >gi|84687910|ref|ZP_01015777.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84664104|gb|EAQ10601.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 129 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 11/124 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G++Q++L + LGI + + +E V+ A+RLQ +S +L + + Sbjct: 14 GDRLAGAREAAGLTQKELAKKLGIKTKTLASWENDVSEPRANRLQMVSGLLSVSLGWLLT 73 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 +E D + L+L +V+ I + + + EK R Sbjct: 74 GEGEGVDPPGTETEMSRD--ARALLLEL---------REVQADITDATKRMARLEKGLRK 122 Query: 136 IEEE 139 + E+ Sbjct: 123 LMED 126 >gi|331086447|ref|ZP_08335527.1| hypothetical protein HMPREF0987_01830 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406213|gb|EGG85736.1| hypothetical protein HMPREF0987_01830 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 179 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 40/87 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I+ R + G+SQE LG+ GI ++KYE G+ +L I+ L I+ F D Sbjct: 4 GEKIKYFRNMRGISQETLGQLSGINSSTIKKYEYGIRNPKPDQLLKIANALGISINIFMD 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 SD+ S + D I Sbjct: 64 FDIETVSDVLSLLFKLNDQIDMKFEAD 90 >gi|167855531|ref|ZP_02478293.1| transcriptional regulator, XRE family protein [Haemophilus parasuis 29755] gi|219871292|ref|YP_002475667.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] gi|167853332|gb|EDS24584.1| transcriptional regulator, XRE family protein [Haemophilus parasuis 29755] gi|219691496|gb|ACL32719.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] Length = 113 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 42/65 (64%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+RI+ +R G S EKL EC+ ++ QQ+ +YE+G +++ + L I+ ++PI+ Sbjct: 10 DKLIGQRIQQKRKEFGYSAEKLSECINLSQQQLSRYERGASKINVNHLIDIAIFFKTPIN 69 Query: 72 FFFDV 76 +FF Sbjct: 70 WFFQD 74 >gi|39998413|ref|NP_954364.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39985360|gb|AAR36714.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|298507358|gb|ADI86081.1| helix-turn-helix transcriptional regulator, LexA-related [Geobacter sulfurreducens KN400] Length = 212 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R GM+Q+ + LGI + E+G + + + +++ Sbjct: 12 LGGRIRKLRQARGMTQKAFADSLGIVQGFLSSIERGRKVPSDTLVIALCRTYGVNVTWLL 71 Query: 75 DVSPTVCSDIS 85 + + Sbjct: 72 QGKGAMNAPPD 82 >gi|289422894|ref|ZP_06424724.1| transcriptional regulator, xre family [Peptostreptococcus anaerobius 653-L] gi|289156699|gb|EFD05334.1| transcriptional regulator, xre family [Peptostreptococcus anaerobius 653-L] Length = 212 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 39/108 (36%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I+ R ++Q+K+ + L ++ Q V +E N + ++S + Sbjct: 4 GEQIKKIRAEKNLTQQKMADMLNVSRQAVSNWENDKNLPDIEMIINMSRAFNMTLDELVF 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + N+ + L + + V +I LV Sbjct: 64 GGKDMNNMTEKLINDGSENRRKNMNLIGIKIGASLLGAGVLSLLIGLV 111 >gi|328479204|gb|EGF48603.1| XRE family transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 298 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 65/157 (41%), Gaps = 32/157 (20%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++ + IR +R+ G++QE L + +G+T V K+EKG++ + L ++ L + + Sbjct: 2 IIMHLNQIIRNKRLAAGLTQEALAQKVGVTAPAVSKWEKGISYPDITLLPILARNLNTDV 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGL--------QLNRYFIQIDD---------- 112 + D S + + + DG + R + + Sbjct: 62 NTLLDFSADLDPAALRRFYTKLTATAQKDGWKAAVALVDEELREYPSVPQLQMMVPSFLQ 121 Query: 113 -----------VKVRQKIIELVRSIVSSEKKYRTIEE 138 VR++II+L ++ SE+ + ++ E Sbjct: 122 GLKSDIPTNEWPAVRERIIQLYQA---SERPHSSLPE 155 >gi|257438372|ref|ZP_05614127.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257199203|gb|EEU97487.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 119 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 16/132 (12%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN +G+++R R + G++QE+L E ++ + + EKG L I+ +L Sbjct: 2 MPNSDLKVLGEKVRKERKLAGLTQEQLAERCHVSTKHIANIEKGSMNPSYEILLAIARIL 61 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + NR ++ VR+ +++ R++ Sbjct: 62 PVSLDALITPGMGKTEIELK---------------EFNRIYLSCP-EAVRETLMDSTRTL 105 Query: 127 VSSEKKYRTIEE 138 ++ + E Sbjct: 106 AKHLTEFYSKIE 117 >gi|229101738|ref|ZP_04232455.1| hypothetical protein bcere0019_9050 [Bacillus cereus Rock3-28] gi|228681686|gb|EEL35846.1| hypothetical protein bcere0019_9050 [Bacillus cereus Rock3-28] Length = 149 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|222529019|ref|YP_002572901.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222455866|gb|ACM60128.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 321 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++Q +L E LGI + YE GV + LQ I+ + ++ Sbjct: 51 RLKELREEANLTQNELAEKLGIGRATLSNYELGVRKPDIDTLQKIANYFNVSSDYLLGMT 110 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRSIVSSEKKYRTI 136 P D + I +L +F ++VK + I+ L ++ + Y Sbjct: 111 PIKKRDSLNSIEE---IIKEKKVKELKNFFKHEENVKAYFEYIVSLFEPLLKAISIYE-- 165 Query: 137 EEECMVE 143 +E+ +V+ Sbjct: 166 DEKIIVD 172 >gi|218233356|ref|YP_002365796.1| hypothetical protein BCB4264_A1063 [Bacillus cereus B4264] gi|218161313|gb|ACK61305.1| hypothetical protein BCB4264_A1063 [Bacillus cereus B4264] Length = 149 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|78043621|ref|YP_360682.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995736|gb|ABB14635.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 127 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 2/114 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR R L +S+E+ E LG++ V + E+G ++ L +I++ L + + Sbjct: 6 KAIGQRIREEREKLELSREEFAEILGLSDYYVGQLERGERQMSLPVLVNIAQCLHVSLDY 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 S E + +F+ +L + ++ + +L+++I Sbjct: 66 LIFGSTPFEPSGVQENISFYNFLQN-LDPELLSLLSKCSHDEL-ELFKKLIKTI 117 >gi|33151354|ref|NP_872707.1| transcription regulator [Haemophilus ducreyi 35000HP] gi|33147574|gb|AAP95096.1| probable transcription regulator [Haemophilus ducreyi 35000HP] Length = 233 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R G S+ +L + LG++ +Q +E AS + I+E L S+ Sbjct: 11 IGNRIRDEREKAGRSRNELADTLGLSLSTLQLWETNEREPQASMIITIAEELGVSPSYLL 70 Query: 75 DVSPTVCS 82 Sbjct: 71 TGETEEGE 78 >gi|197119614|ref|YP_002140041.1| helix-turn-helix DNA-binding protein, XRE family [Geobacter bemidjiensis Bem] gi|197088974|gb|ACH40245.1| helix-turn-helix DNA-binding protein, XRE family [Geobacter bemidjiensis Bem] Length = 110 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P + +G +R R + G SQE+LGE ++++ V + E+G L I+ Sbjct: 2 KNPVAIRQLLGDNVRTLRKVRGWSQEELGEHADLSYKFVGEIERGTGNPSLDSLVGIANA 61 Query: 66 LESPISFFF 74 L PI+ F Sbjct: 62 LTVPIAELF 70 >gi|153009334|ref|YP_001370549.1| hypothetical protein Oant_2004 [Ochrobactrum anthropi ATCC 49188] gi|151561222|gb|ABS14720.1| protein of unknown function DUF955 [Ochrobactrum anthropi ATCC 49188] Length = 470 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 3 PRKLYIGRKIREIREQHKATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 63 IGAISLGDDDRLLSAVSEALADPVFDNYKPNLQELKLITQNAP--------GLAHALIAC 114 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 115 HQAYRRNSEQL 125 >gi|56965066|ref|YP_176798.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911310|dbj|BAD65837.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 193 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 52/130 (40%), Gaps = 13/130 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GK +R R GMS E L + +G++ + K E+G S + I+ L PI+ Sbjct: 17 KQIGKNLRQLRTSKGMSIEALAQQIGVSKLTLLKIEQGEGNPTLSVIWKIANGLHIPITA 76 Query: 73 FFDVSPTVCSD--------ISSEENNVMDFISTPDGL-QLNRYFI----QIDDVKVRQKI 119 V SS++ +++ + GL + R ++ + + R + Sbjct: 77 LLSFEADVAIARANKAMKLSSSDDEFIVEPLFRSQGLMECYRGYLQPQCRYESEAHRLGV 136 Query: 120 IELVRSIVSS 129 +E V + Sbjct: 137 VETVTVMAGQ 146 >gi|319935094|ref|ZP_08009535.1| hypothetical protein HMPREF9488_00366 [Coprobacillus sp. 29_1] gi|319809989|gb|EFW06366.1| hypothetical protein HMPREF9488_00366 [Coprobacillus sp. 29_1] Length = 240 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 36/76 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK++ R G+SQE+L L ++ Q + K+E ++ + IS+ + ++ Sbjct: 1 MSIGKKLLYLRQQRGLSQEELASALHVSRQTISKWESDLSLPDMKMMLSISQFYDVSVTE 60 Query: 73 FFDVSPTVCSDISSEE 88 V S S E Sbjct: 61 LLGVDEKENSQESIEH 76 >gi|229098072|ref|ZP_04229020.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-29] gi|228685263|gb|EEL39193.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-29] Length = 277 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 35/82 (42%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KKI + G+++ R G+SQE L E L T Q V K+E G +L I Sbjct: 8 KKIKGDTHMGFGEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGN 67 Query: 65 VLESPISFFFDVSPTVCSDISS 86 V E + + + ++ + Sbjct: 68 VFEVSLDYLLKETAKQSNEKEN 89 >gi|197106670|ref|YP_002132047.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] gi|196480090|gb|ACG79618.1| predicted transcriptional regulator [Phenylobacterium zucineum HLK1] Length = 479 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 1/123 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P + +G R++ R LG++Q ++ E LG++ + E+ V A L ++E Sbjct: 4 APTDRKLFLGARLKRLRRDLGLTQTRMAEDLGVSPSYLNLLERNQRPVTAQVLLRLAEAY 63 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + + + +E + F V + I+ L R+ Sbjct: 64 DLDLKTLSSDPESASATDLAEVFSDQMFRDLGVARHEVAEVAD-SAPGVSEAIVRLYRAY 122 Query: 127 VSS 129 + Sbjct: 123 LDQ 125 >gi|15801491|ref|NP_287508.1| transcriptional repressor DicA [Escherichia coli O157:H7 EDL933] gi|15831019|ref|NP_309792.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. Sakai] gi|208814889|ref|ZP_03256068.1| HTH-type transcriptional regulator DicA [Escherichia coli O157:H7 str. EC4045] gi|218694455|ref|YP_002402122.1| transcriptional repressor DicA [Escherichia coli 55989] gi|218704543|ref|YP_002412062.1| transcriptional repressor DicA [Escherichia coli UMN026] gi|254792733|ref|YP_003077570.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. TW14359] gi|260854926|ref|YP_003228817.1| putative phage repressor protein [Escherichia coli O26:H11 str. 11368] gi|260868007|ref|YP_003234409.1| putative phage repressor protein [Escherichia coli O111:H- str. 11128] gi|261226536|ref|ZP_05940817.1| DicA-like protein, regulator of DicB [Escherichia coli O157:H7 str. FRIK2000] gi|261254853|ref|ZP_05947386.1| putative phage repressor protein [Escherichia coli O157:H7 str. FRIK966] gi|291282288|ref|YP_003499106.1| DicA-like protein [Escherichia coli O55:H7 str. CB9615] gi|293404421|ref|ZP_06648415.1| transcriptional repressor DicA [Escherichia coli FVEC1412] gi|298380199|ref|ZP_06989804.1| transcriptional repressor DicA [Escherichia coli FVEC1302] gi|300896137|ref|ZP_07114689.1| transcriptional repressor DicA [Escherichia coli MS 198-1] gi|301017544|ref|ZP_07182222.1| transcriptional repressor DicA [Escherichia coli MS 69-1] gi|12514990|gb|AAG56120.1|AE005343_10 similar to DicA, regulator of DicB encoded by prophage CP-933O [Escherichia coli O157:H7 str. EDL933] gi|13361230|dbj|BAB35188.1| putative regulatory protein [Escherichia coli O157:H7 str. Sakai] gi|208731537|gb|EDZ80225.1| HTH-type transcriptional regulator DicA [Escherichia coli O157:H7 str. EC4045] gi|218351187|emb|CAU96891.1| repressor protein of division inhibition from bacteriophage origin [Escherichia coli 55989] gi|218431640|emb|CAR12520.1| repressor protein of division inhibition from bacteriophage origin [Escherichia coli UMN026] gi|254592133|gb|ACT71494.1| DicA-like protein, regulator of DicB [Escherichia coli O157:H7 str. TW14359] gi|257753575|dbj|BAI25077.1| putative phage repressor protein [Escherichia coli O26:H11 str. 11368] gi|257764363|dbj|BAI35858.1| putative phage repressor protein [Escherichia coli O111:H- str. 11128] gi|290762161|gb|ADD56122.1| DicA-like protein [Escherichia coli O55:H7 str. CB9615] gi|291429007|gb|EFF02032.1| transcriptional repressor DicA [Escherichia coli FVEC1412] gi|298279897|gb|EFI21405.1| transcriptional repressor DicA [Escherichia coli FVEC1302] gi|300359966|gb|EFJ75836.1| transcriptional repressor DicA [Escherichia coli MS 198-1] gi|300400161|gb|EFJ83699.1| transcriptional repressor DicA [Escherichia coli MS 69-1] gi|320637417|gb|EFX07224.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. G5101] gi|320642724|gb|EFX11945.1| transcriptional repressor DicA [Escherichia coli O157:H- str. 493-89] gi|320648078|gb|EFX16758.1| transcriptional repressor DicA [Escherichia coli O157:H- str. H 2687] gi|320653638|gb|EFX21722.1| transcriptional repressor DicA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659531|gb|EFX27100.1| transcriptional repressor DicA [Escherichia coli O55:H7 str. USDA 5905] gi|320664667|gb|EFX31818.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. LSU-61] gi|323153261|gb|EFZ39521.1| HTH-type transcriptional regulator dicA [Escherichia coli EPECa14] gi|323178022|gb|EFZ63604.1| HTH-type transcriptional regulator dicA [Escherichia coli 1180] gi|326344486|gb|EGD68237.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. 1044] gi|326346335|gb|EGD70072.1| transcriptional repressor DicA [Escherichia coli O157:H7 str. 1125] Length = 135 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 53/127 (41%), Gaps = 6/127 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ RR L +SQ LG+ + + + ++E+ + RL +S+ L+ ++ Sbjct: 7 GARLLYRRKKLKLSQAALGKLVKVAHVTISQWERDETQPAGKRLFALSQALQCSPTWLLF 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 +N ++ T D +L + F + + + + L+ + + + + Sbjct: 67 GDEDKQPGEPIPDNQPVNL--TEDQKELLQLFDALPESEQK----ALLSEMRARVENFNK 120 Query: 136 IEEECMV 142 + EE + Sbjct: 121 LFEELLK 127 >gi|288947737|ref|YP_003445120.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] gi|288898253|gb|ADC64088.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] Length = 273 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 52/125 (41%), Gaps = 17/125 (13%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQ--QVQKYEKGVNRVGASRLQHISEVLES 68 ++ ++G RIR RR LG+S KL E + + YE G+ R G + +S + E Sbjct: 157 LNRSIGARIRTRRKQLGLSLRKLSERIDGAISSVALNNYEIGLRRPGIEEVMQLSAIFEV 216 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 ++ + D +L R+F + D + R I +L ++ S Sbjct: 217 SPAWLLCIDDRPPPD--------------EHERELIRHFRR-TDERGRGLIFQLSAALAS 261 Query: 129 SEKKY 133 + ++ Sbjct: 262 NTREQ 266 >gi|224542005|ref|ZP_03682544.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai DSM 15897] gi|224525062|gb|EEF94167.1| hypothetical protein CATMIT_01178 [Catenibacterium mitsuokai DSM 15897] Length = 378 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 8/110 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK +GK I R G++QE+LG LG++ + + ++E G S L Sbjct: 1 MDTKK--------IGKFISENRKRKGLTQEQLGNILGVSNKTISRWENGNYMPDLSLLIP 52 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 +SE L+ ++ + I + L + +I Sbjct: 53 LSETLDISLNELLNGKYITEDKIMETTEKSLKNTINYSKNMLIQEKRKIS 102 >gi|291546057|emb|CBL19165.1| Helix-turn-helix [Ruminococcus sp. SR1/5] Length = 81 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 5/73 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGEC-----LGITFQQVQKYEKGVNRVGASRLQHISEVL 66 D+ +GK +R R G+SQEKL I KYE G + S L + ++ Sbjct: 8 DVYIGKNLRRLREKFGLSQEKLCAELQCRNCDIGRSTYAKYENGELNIRISVLMELKKIY 67 Query: 67 ESPISFFFDVSPT 79 FFD + Sbjct: 68 NCSYDEFFDDLDS 80 >gi|308235770|ref|ZP_07666507.1| DNA-binding protein [Gardnerella vaginalis ATCC 14018] gi|311114942|ref|YP_003986163.1| XRE family transcriptional regulator [Gardnerella vaginalis ATCC 14019] gi|310946436|gb|ADP39140.1| XRE family transcriptional regulator [Gardnerella vaginalis ATCC 14019] Length = 210 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDH 60 Query: 73 FFDVSPTVCSDISS 86 D + I Sbjct: 61 LLDKDNAIDLSIIK 74 >gi|117165275|emb|CAJ88837.1| putative transcriptional regulators [Streptomyces ambofaciens ATCC 23877] Length = 192 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 3/121 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P+PVD + R+ R G S +L E G++ + + E+ AS L Sbjct: 1 MRDTDDAPDPVDARLAARLAELRAERGWSLGELAERSGVSRSTLSRAERAETSPTASLLN 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + V +S + + + R + +R +++ Sbjct: 61 RLCAVYGRTMSRLLSEVEAEPALLVRAAEQPRWEDRSAG---FVRRSVSPPHAGLRGELV 117 Query: 121 E 121 E Sbjct: 118 E 118 >gi|94970073|ref|YP_592121.1| transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552123|gb|ABF42047.1| transcriptional regulator, XRE family with cupin sensor domain [Candidatus Koribacter versatilis Ellin345] Length = 201 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 40/97 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++R R+ + +LG+ G++ + K E+G L I+ V + +FF Sbjct: 21 IGEKLRALRLKKKLGLVELGKHTGLSPALLSKLERGKLFPTLPTLLRIALVFSVGLDYFF 80 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 ++ + F P+ + YF +D Sbjct: 81 ADESRRHVVSVVRKDERLRFPERPNTRDVAYYFESLD 117 >gi|229010434|ref|ZP_04167638.1| hypothetical protein bmyco0001_8940 [Bacillus mycoides DSM 2048] gi|228750854|gb|EEM00676.1| hypothetical protein bmyco0001_8940 [Bacillus mycoides DSM 2048] Length = 149 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|300362045|ref|ZP_07058222.1| bacteriophage transcriptional regulator [Lactobacillus gasseri JV-V03] gi|300354664|gb|EFJ70535.1| bacteriophage transcriptional regulator [Lactobacillus gasseri JV-V03] Length = 115 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 46/112 (41%), Gaps = 5/112 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ +RI+ R+ ++Q++L + L + + +E G N L+ ++ + + + Sbjct: 1 MNIAQRIKDLRLSKHLTQKELAQLLNVKPTTISGWELGRNEPSIDTLKDLAHIFNVSVDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + D + G + +D++V + I+E + Sbjct: 61 -MAGDTENQNKDKKSIDLEKDPVVLSYGGRPVSD----EDMEVIKAILERHK 107 >gi|226948120|ref|YP_002803211.1| HTH domain protein [Clostridium botulinum A2 str. Kyoto] gi|226840862|gb|ACO83528.1| HTH domain protein [Clostridium botulinum A2 str. Kyoto] Length = 384 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 61/147 (41%), Gaps = 13/147 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N D+N+GK I +R G++QE+L +G++ V K+E G + L ++ Sbjct: 1 MINLRDLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYF 60 Query: 67 ESPISFFFDVSPTVCSD--------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + SP + + +S E + +L + + + Sbjct: 61 NISVDELLGYSPQLTKEDIKKIYSKLSHEFAVKPFDEAMEQCNKLIKKYYSCFPFLL--S 118 Query: 119 IIEL---VRSIVSSEKKYRTIEEECMV 142 II+L +++ ++ + I ++C++ Sbjct: 119 IIQLLLNYSNLIKNDAIKKEIFQQCIL 145 >gi|15887953|ref|NP_353634.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15155555|gb|AAK86419.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 471 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 9/143 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NK I G R+R R L ++Q + E L I+ + E+ + L Sbjct: 1 MSENK-------IFAGPRVRRIRNGLALTQTAMAEALAISPSYLNLIERNQRPLTVQLLL 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ V + + S + + + P +L + ++ Sbjct: 54 KLASVYKVDLDDLQGESAGSAGQLREVFADPLLVGEVPSPQELIEVADAAPNAA--SGVL 111 Query: 121 ELVRSIVSSEKKYRTIEEECMVE 143 +L R+ ++ + + E Sbjct: 112 KLYRAYREQAQRLSDLSDLLARE 134 >gi|303326709|ref|ZP_07357151.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] gi|302862697|gb|EFL85629.1| toxin-antitoxin system, antitoxin component, Xre family [Desulfovibrio sp. 3_1_syn3] Length = 108 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 46/97 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GKRIR R+ G+SQEKL E GI+ + + + E+G + ++ ++ L + Sbjct: 7 ILLGKRIRELRVKHGLSQEKLSELSGISSRHISEMERGESNPSFQVMEQLTFALGVSMKE 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 FFD + +E M + LQL ++ Sbjct: 67 FFDFEHHADDEAIRDELCRMLVGFSRPNLQLAYKLLR 103 >gi|78043201|ref|YP_360517.1| putative prophage LambdaCh01, repressor protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995316|gb|ABB14215.1| putative prophage LambdaCh01, repressor protein [Carboxydothermus hydrogenoformans Z-2901] Length = 254 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R ++Q +L + L I + YE + L +S I F Sbjct: 4 GQRLRQLRTERDLTQAELAKLLSIGESTISFYESNKRQPDFDTLIKLSNFFNVSIDFLLG 63 Query: 76 VSPTV 80 + Sbjct: 64 RTDES 68 >gi|327441790|dbj|BAK18155.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 194 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 37/76 (48%), Gaps = 8/76 (10%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N+K +G+ I R GM+Q+++ + L ++ + + K+E+G+ + L H Sbjct: 1 MDNEK--------IGQLIYTLRKGKGMTQKQVADALFLSDRTISKWERGIGCPDITLLPH 52 Query: 62 ISEVLESPISFFFDVS 77 ++ + + PI Sbjct: 53 LAALFDIPIENLLTGE 68 >gi|295700971|ref|YP_003608864.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440184|gb|ADG19353.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 190 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 51/124 (41%), Gaps = 8/124 (6%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 ++K P+ + G +IR R L + ++ GI+ + + E+G S L I Sbjct: 4 DDRKSAAPLVM--GSKIRALRKRLQRTLDETATAAGISKPFLSQVERGHATPSISSLAGI 61 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++ L + +F + S ++E F + + F ++ + V +++ + Sbjct: 62 AQALGVTMQYFVETPTEAKSVRRADERQYFSFADSANQ------FARLTNAAVGRQLDAI 115 Query: 123 VRSI 126 + + Sbjct: 116 LVRM 119 >gi|170745337|ref|YP_001766794.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658938|gb|ACB27992.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 138 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 52/97 (53%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D ++G+RIR R + +LG LG + QQ++KYE+G++R+ AS L I+ +L+ P Sbjct: 24 PLDRDIGERIRKHRQDRRLGYGQLGGMLGFSGQQMRKYERGLSRIPASTLYVIAHILDVP 83 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 +++ + + I + +S + ++ Sbjct: 84 VNYLLPDEKRMLNPIQQRIQEITTKLSYIEDVRFLVA 120 >gi|206968685|ref|ZP_03229640.1| transcriptional regulator, XRE family [Bacillus cereus AH1134] gi|206735726|gb|EDZ52884.1| transcriptional regulator, XRE family [Bacillus cereus AH1134] Length = 262 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFRLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSDISS 86 + ++ + Sbjct: 64 ETAEQSNEKEN 74 >gi|118594424|ref|ZP_01551771.1| N-acetylglutamate synthase [Methylophilales bacterium HTCC2181] gi|118440202|gb|EAV46829.1| N-acetylglutamate synthase [Methylophilales bacterium HTCC2181] Length = 516 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 38/89 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG IR R + G++ E L ++ + + E+G + S LQ I+EVL + Sbjct: 3 KIVGNNIRELRTLHGLTLNAFAEKLALSPSNLSRIERGSLNIKVSLLQKIAEVLGTSPHV 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 FF+ I S ++ F + + Sbjct: 63 FFNKYGQNTGPIKSIKDFTHQFRESSRYI 91 >gi|42782702|ref|NP_979949.1| helix-turn-helix domain-containing protein [Bacillus cereus ATCC 10987] gi|42738628|gb|AAS42557.1| helix-turn-helix domain protein [Bacillus cereus ATCC 10987] Length = 262 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSDISS 86 + ++ Sbjct: 64 ETAEQSNENVD 74 >gi|89893492|ref|YP_516979.1| hypothetical protein DSY0746 [Desulfitobacterium hafniense Y51] gi|89332940|dbj|BAE82535.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 134 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-D 75 +++R+ R G+SQE+L E + ++ Q V K+E +L +S+ + D Sbjct: 8 EKLRVLRKEKGLSQEQLAEMVNVSRQAVSKWESEQAYPELDKLILLSDFFNISLDDLIKD 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL 101 +P + + ++ D T + L Sbjct: 68 KNPEDVAKNNDNSDSKEDDEETDEWL 93 >gi|319646361|ref|ZP_08000591.1| YqaE protein [Bacillus sp. BT1B_CT2] gi|317392111|gb|EFV72908.1| YqaE protein [Bacillus sp. BT1B_CT2] Length = 120 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 7/110 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRI R G+SQ +L + LG + ++ YE+G L I++ E + Sbjct: 1 MLGKRIAALRKEKGLSQYELADRLGFSRGKLANYEQGTREPDYETLIKIADFFEVSTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 D E+ L + F+ D +V Q+I++ Sbjct: 61 LRGVDPKVQDKIFEDEA-------KRILNDPKTFLAARDGEVTQEILDAA 103 >gi|229150060|ref|ZP_04278283.1| hypothetical protein bcere0011_16160 [Bacillus cereus m1550] gi|228633359|gb|EEK89965.1| hypothetical protein bcere0011_16160 [Bacillus cereus m1550] Length = 149 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R G SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MNLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENN 90 + I S+ + Sbjct: 61 LIKGNQDFKKKIHSDAED 78 >gi|255102927|ref|ZP_05331904.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|296449255|ref|ZP_06891041.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296261924|gb|EFH08733.1| XRE family transcriptional regulator [Clostridium difficile NAP08] Length = 135 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R+ GM+QE + E + ++ Q + +E + + +S + + Sbjct: 1 MEIGKKLKNARVQSGMTQENVAEKINVSRQTISNWENEKSYPDIISVIELSNLYSISLDV 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + N Sbjct: 61 LLKGDEKMIEHLEESTN 77 >gi|225572080|ref|ZP_03780944.1| hypothetical protein RUMHYD_00374 [Blautia hydrogenotrophica DSM 10507] gi|225040414|gb|EEG50660.1| hypothetical protein RUMHYD_00374 [Blautia hydrogenotrophica DSM 10507] Length = 192 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+IR R SQE L E + ++ Q + +E G + + L +SE E + Sbjct: 1 MELGKQIRRYRNERSFSQETLAEKVYVSRQTISNWENGKSYPDVNSLVLLSEAFEVSLDK 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + + E+ Sbjct: 61 LIKGDVENMKEQINREDQQ 79 >gi|134101965|ref|YP_001107626.1| hypothetical protein SACE_5483 [Saccharopolyspora erythraea NRRL 2338] gi|133914588|emb|CAM04701.1| hypothetical protein SACE_5483 [Saccharopolyspora erythraea NRRL 2338] Length = 11792 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 26/67 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +G +Q ++ E +G+ + +E G + + + ++ F Sbjct: 5560 RLKRERARVGRTQREVAEKIGVHLSTLSNWEHGRDNIAPRHRERLAAFYGVSQEELFADM 5619 Query: 78 PTVCSDI 84 P + Sbjct: 5620 PEASGET 5626 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 1/87 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FFDVS 77 +R R +G +Q + E L ++ V +E G + + + + + FD Sbjct: 7836 LRQAREAMGWTQAYVAEKLEVSSNTVSNWETGKTPMRSGDRESLRVLYGRSTDETLFDGL 7895 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLN 104 P V I + E++ + + + Sbjct: 7896 PPVSDGIQAPESSRHERAAQYHEQEQV 7922 Score = 39.4 bits (90), Expect = 0.15, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 31/162 (19%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P + +G ++R R +Q + I + +YE G +R + + E+ Sbjct: 2802 PSPERVVLGNKLRALREAKFETQTDAAKQSNIKAVSIGRYESGSRVPDPARTEALLELYG 2861 Query: 68 SP----ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL-------------------N 104 + +E + + + L Sbjct: 2862 VRDAAQREEVMRLRDEAAGPRGQQEPSPVRVVLGNKLRDLREAARFETQAAAAKQSNIKV 2921 Query: 105 RYF------IQIDDVKVRQKIIEL--VRSIVSSEKKYRTIEE 138 R F ++ D + ++EL VR E+ R +E Sbjct: 2922 RSFSRYESGSRVPDPARTEALLELYGVRDAAQREEVMRLRDE 2963 Score = 39.0 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 1/85 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FFDVS 77 +R R +G ++ + E L ++ V +E G + + + + + FD Sbjct: 7972 LRQAREAMGWTRAYVAEKLEVSSDTVSNWETGKTPMRSGDREILRVLYGRSTDETLFDGL 8031 Query: 78 PTVCSDISSEENNVMDFISTPDGLQ 102 P V I + E++ + + Sbjct: 8032 PPVSDGIQAPESSRHERAAQYHDSD 8056 Score = 38.3 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 21/55 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G R++ R G S+ E + + + YE G L+ + + + Sbjct: 1777 LGSRLQTLREEAGFSKRAAAEEAKVYYGWILHYEDGRRVPTPGALRKLLDAYDVS 1831 >gi|118472941|ref|YP_890853.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118174228|gb|ABK75124.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length = 472 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 6/113 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R G++Q L LG++ + + E V L +SE + P +F Sbjct: 5 FIGPRLRRLREEHGLTQVALARALGLSTSYINQLENDQRPVTVPVLLSLSERFDLPTHYF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 S + +D +T ++ + V Q ++ L R + Sbjct: 65 TPDSDARLVSDLRDIL--VDSAATQAQIEELVARM----PAVGQTLVTLHRRL 111 >gi|332638098|ref|ZP_08416961.1| hypothetical protein WcibK1_05343 [Weissella cibaria KACC 11862] Length = 112 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R +Q+ L E L ++ Q + K+E G RL IS + + Sbjct: 1 MILGQRIKEEREKRQWTQDYLAETLNVSRQTISKWEVGSTYPDIDRLVQISNLFGITLDS 60 Query: 73 FFDVSPTVCSDI 84 ++ I Sbjct: 61 LIKGDDSLKKSI 72 >gi|325265475|ref|ZP_08132198.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324029333|gb|EGB90625.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 206 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 36/94 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R ++QE+L E L ++ V K+E G L+ IS++ E I Sbjct: 5 EKLQQLRKKKNLTQEQLAEQLYVSRTAVSKWESGRGYPNIESLKCISKLFEVTIDELLSS 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + +N+ S G+ I Sbjct: 65 DELITLAECENRSNMKKIYSLISGMIDVMAIAFI 98 >gi|304385876|ref|ZP_07368220.1| XRE family transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|304328380|gb|EFL95602.1| XRE family transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 196 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Query: 7 IPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 P VD +++G ++ R ++Q ++ L +T Q + ++E+G L+ ++E+ Sbjct: 2 KPEGVDQMSIGPALQKVRQDRHLTQAEVASQLYVTRQTISRWEQGKTIPNIYALKDLAEL 61 Query: 66 LESPISFF 73 I Sbjct: 62 YGVSIDEL 69 >gi|261369061|ref|ZP_05981944.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282568797|gb|EFB74332.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 90 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VGKR++ R +G SQ K+ + LG T + +YE G + + ++ + + + Sbjct: 2 IEVGKRLKALRESIGFSQVKMAQALGTTQSSINRYENGQSSPSVELFRRYADYFDVSLDY 61 Query: 73 FFDVSPTVCSDI 84 F + + Sbjct: 62 IFARTDKPQGET 73 >gi|295700360|ref|YP_003608253.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439573|gb|ADG18742.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 195 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 4/115 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R++ R S + L E ++ + E+G + A+ L ++ L P Sbjct: 2 DINALIARRVKALRDAQNWSLDALAERSKVSRSNISLIERGQSSPTATVLDKLATALNVP 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 ++ F+ T ++ S + T R + R I +LV Sbjct: 62 LASLFEREGTPAAEPSPVSRAAEQPVWTDPSSGYVR---RHLSPTARSAI-QLVE 112 >gi|229070617|ref|ZP_04203855.1| hypothetical protein bcere0025_28000 [Bacillus cereus F65185] gi|228712522|gb|EEL64459.1| hypothetical protein bcere0025_28000 [Bacillus cereus F65185] Length = 108 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 32/90 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ KR+ R G +Q + L I +E G A + +++E+ I Sbjct: 3 HLSKRLAELRKKQGYTQSDISHRLNIARTTYANWEYGKADPDADSIMNLAEIHNVSIDEL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQL 103 F + + S + + + D L Sbjct: 63 FGRNAPLESKLELIKVAISDLPPQKQHEVL 92 >gi|261251841|ref|ZP_05944415.1| putrescine utilization regulator [Vibrio orientalis CIP 102891] gi|260938714|gb|EEX94702.1| putrescine utilization regulator [Vibrio orientalis CIP 102891] Length = 185 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 31/73 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +GK I L R G+SQ +L E GIT + E G S LQ I V +S Sbjct: 3 NQEIGKNIVLLRKEHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLS 62 Query: 72 FFFDVSPTVCSDI 84 FF ++ Sbjct: 63 EFFTFEQPQSEEV 75 >gi|206968183|ref|ZP_03229139.1| hypothetical protein BCAH1134_1096 [Bacillus cereus AH1134] gi|229177566|ref|ZP_04304944.1| hypothetical protein bcere0005_9330 [Bacillus cereus 172560W] gi|206737103|gb|EDZ54250.1| hypothetical protein BCAH1134_1096 [Bacillus cereus AH1134] gi|228605928|gb|EEK63371.1| hypothetical protein bcere0005_9330 [Bacillus cereus 172560W] Length = 149 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|167758894|ref|ZP_02431021.1| hypothetical protein CLOSCI_01240 [Clostridium scindens ATCC 35704] gi|167663634|gb|EDS07764.1| hypothetical protein CLOSCI_01240 [Clostridium scindens ATCC 35704] Length = 108 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 44/98 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+RI+ R+ L M+QE+L E + ++ + + E+G ++ L +I+ L + + Sbjct: 4 IALGRRIKEERLKLNMTQERLAEEVNLSTSYIGQIERGERKLTLDSLINITNCLGVTVDY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 S + + +TP +L ++ Sbjct: 64 LLQESIIQDQVPYKDIWTGLLSEATPKEQELVVNLTKL 101 >gi|241113139|ref|YP_002972974.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861347|gb|ACS59013.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 182 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 34/84 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + + + Sbjct: 1 MSVDIGNRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF P +++ Sbjct: 61 AEFFAFEPERPRKAFYAAEELVEI 84 >gi|149188518|ref|ZP_01866811.1| DNA-binding transcriptional repressor [Vibrio shilonii AK1] gi|148837736|gb|EDL54680.1| DNA-binding transcriptional repressor [Vibrio shilonii AK1] Length = 185 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + +GK I R G+SQ +L E GIT + E S LQ I V Sbjct: 1 MDNHQIGKNIAQLRKERGLSQRELAEKAGITHSAISSIENAKVSPSVSSLQKIVNVFSLS 60 Query: 70 ISFFFDVSPTVCSDI 84 +S FF + +I Sbjct: 61 LSEFFTLEQQENKEI 75 >gi|325291997|ref|YP_004277861.1| HTH XRE family transcriptional regulator [Agrobacterium sp. H13-3] gi|325059850|gb|ADY63541.1| putative HTH transcriptional regulator, XRE family [Agrobacterium sp. H13-3] Length = 471 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 9/143 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NK I G R+R R L ++Q + E L I+ + E+ + L Sbjct: 1 MSENK-------IFAGPRVRRIRNGLALTQTAMAEALAISPSYLNLIERNQRPLTVQLLL 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ V + + S + + + P +L + ++ Sbjct: 54 KLASVYKVDLDDLQGESAGSAGQLREVFADPLLVGEVPSPQELIEVADAAPNAA--SGVV 111 Query: 121 ELVRSIVSSEKKYRTIEEECMVE 143 +L R+ ++ + + E Sbjct: 112 KLYRAYREQAQRLSDLSDLLARE 134 >gi|170736559|ref|YP_001777819.1| helix-turn-helix domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169818747|gb|ACA93329.1| helix-turn-helix domain protein [Burkholderia cenocepacia MC0-3] Length = 130 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 44/109 (40%), Gaps = 12/109 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R L M+Q + GE G+ Q YE+G AS L ++E + + + Sbjct: 14 RLKQERRRLQMNQAEFGEAGGVRKQAQSNYEQGSRIPDASYLTRLAE-IGVDVQYLLTGR 72 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+ ++ + +L + + R+ ++ LV +I Sbjct: 73 PSDPGTLALTGDE-----------ELLLAGFRELKPRERRGVLALVAAI 110 >gi|24112291|ref|NP_706801.1| transcriptional repressor DicA [Shigella flexneri 2a str. 301] gi|24051146|gb|AAN42508.1| similar to DicA, regulator of DicB encoded by prophage [Shigella flexneri 2a str. 301] gi|281600240|gb|ADA73224.1| putative regulator [Shigella flexneri 2002017] gi|313650353|gb|EFS14762.1| HTH-type transcriptional regulator dicA [Shigella flexneri 2a str. 2457T] gi|320175554|gb|EFW50649.1| transcriptional repressor DicA [Shigella dysenteriae CDC 74-1112] gi|320187224|gb|EFW61923.1| transcriptional repressor DicA [Shigella flexneri CDC 796-83] gi|323175040|gb|EFZ60654.1| HTH-type transcriptional regulator dicA [Escherichia coli LT-68] Length = 135 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ RR L +SQ LG+ + + + ++E+ + RL +S+ L+ ++ Sbjct: 7 GARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQPAGKRLFALSQALQCSPTWLLF 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 +N I T D +L + F + + + + L+ + + + + Sbjct: 67 GDEDKQPGEPIPDNQPA--ILTEDQKELLQLFDALPESEQK----ALLSEMRARVENFNK 120 Query: 136 IEEECMV 142 + EE + Sbjct: 121 LFEELLK 127 >gi|50122315|ref|YP_051482.1| putative prophage regulatory ptotein [Pectobacterium atrosepticum SCRI1043] gi|49612841|emb|CAG76291.1| putative prophage regulatory ptotein [Pectobacterium atrosepticum SCRI1043] Length = 133 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 37/85 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI R G++Q +L E LG++ Q VQ +E G R+ S L ++++ + Sbjct: 24 MALGERITTLRKERGITQAELAEKLGVSQQTVQAWEAGRRRIKVSSLPSVAQIFSVSLEE 83 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 F +P + Sbjct: 84 VFGEAPEPARRKRGPAPKWQQQMEE 108 >gi|329298836|ref|ZP_08256172.1| DNA-binding transcriptional repressor PuuR [Plautia stali symbiont] Length = 186 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 11/129 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R LG+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GRRLSQIRQELGLSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFFS 68 Query: 76 VSPTVCSD-ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI----VSSE 130 + I ++ ++ S LQL ID+ ++ + L+ S+ Sbjct: 69 EPKVNATPRIIVRPDDCVEIGSLGVSLQL------IDNGAAKRALAMLLERYEPGGASTG 122 Query: 131 KKYRTIEEE 139 +K R EE Sbjct: 123 EKLRHPGEE 131 >gi|254555732|ref|YP_003062149.1| transcriptional regulator, xre family [Lactobacillus plantarum JDM1] gi|254044659|gb|ACT61452.1| transcriptional regulator, xre family [Lactobacillus plantarum JDM1] Length = 221 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 37/77 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++L+R LG++Q+ L + L +T Q V ++E G L +S+ L+ + Sbjct: 1 MELGQALKLQREALGLTQQVLADQLHVTRQTVSRWENGSTYPNLDTLVELSDRLQISLDK 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + + + Sbjct: 61 LLKSDEVPVAPVVHQIS 77 >gi|146317667|ref|YP_001197379.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|145688473|gb|ABP88979.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] Length = 111 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 2/97 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + ++IR+ R +SQ++L E L I+ Q V K+E G +L ++E+ + Sbjct: 2 IMKQLAQQIRVLRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSL 61 Query: 71 SFFFDVSPTVCSDISSEENNV--MDFISTPDGLQLNR 105 + + + + +F++ L R Sbjct: 62 DYLVLGKEPEKEIVVEQRGKMNGWEFLNKESKRPLTR 98 >gi|27764612|ref|NP_776234.1| Yga2B [Corynebacterium glutamicum] gi|27657783|gb|AAO18211.1| Yga2B [Corynebacterium glutamicum] Length = 81 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 4/76 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +KK + I +G RIR R LG+SQE+L G+ V E+G + L Sbjct: 1 MTPDKK----ILIQLGGRIRDVRKGLGISQEELAHLSGMHRTYVSSVERGERNISVLNLL 56 Query: 61 HISEVLESPISFFFDV 76 ++ VL Sbjct: 57 SLAGVLGVDAGDLVTG 72 >gi|309778211|ref|ZP_07673144.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914045|gb|EFP59852.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] Length = 135 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R+ GM+QE + E + ++ Q + +E + + +S + + Sbjct: 1 MEIGKKLKNARVQSGMTQENVAEKINVSRQTISNWENEKSYPDIISVIELSNLYSISLDV 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + N Sbjct: 61 LLKGDEKMIEHLEESTN 77 >gi|169823920|ref|YP_001691531.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|302379963|ref|ZP_07268442.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna ACS-171-V-Col3] gi|303234408|ref|ZP_07321047.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna BVS033A4] gi|167830725|dbj|BAG07641.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|302312189|gb|EFK94191.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna ACS-171-V-Col3] gi|302494524|gb|EFL54291.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna BVS033A4] Length = 134 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 3/118 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFFF 74 G +++ R G++Q +L + LG+T + + YE R + I+E I+F Sbjct: 4 GSKLKQLREDRGLTQTELADKLGVTLKTISNYETKGTRPRTQDMYKKIAEFFNVDINFLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIELVRSIVSSE 130 V D + + + L+ F + + + + + ++ Sbjct: 64 TVEDNFVLDSAKKFGYSGKKDAENLVDNLSGLFAGGSLPEEDKDKLFNAIAEAYYEAK 121 >gi|30019187|ref|NP_830818.1| transcriptional repressor [Bacillus cereus ATCC 14579] gi|229108598|ref|ZP_04238210.1| hypothetical protein bcere0018_8800 [Bacillus cereus Rock1-15] gi|229126443|ref|ZP_04255458.1| hypothetical protein bcere0015_9000 [Bacillus cereus BDRD-Cer4] gi|229143741|ref|ZP_04272162.1| hypothetical protein bcere0012_9070 [Bacillus cereus BDRD-ST24] gi|29894730|gb|AAP08019.1| Transcriptional repressor [Bacillus cereus ATCC 14579] gi|228639694|gb|EEK96103.1| hypothetical protein bcere0012_9070 [Bacillus cereus BDRD-ST24] gi|228657023|gb|EEL12846.1| hypothetical protein bcere0015_9000 [Bacillus cereus BDRD-Cer4] gi|228674853|gb|EEL30085.1| hypothetical protein bcere0018_8800 [Bacillus cereus Rock1-15] Length = 149 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + I + + Sbjct: 65 DEELTQKIIEDSKQLAYP 82 >gi|260893514|ref|YP_003239611.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260865655|gb|ACX52761.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 256 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 42/102 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G++Q +L G+T + + E+G + L+ I++ + +F Sbjct: 139 LGARLRALREEYGLTQAQLAAMAGVTAGLIGQIEQGKVQPSLKTLEKIAQAMGVSPCYFL 198 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 +S ++ + ++ + + + ++R Sbjct: 199 IEPDASEQVLSMLNPDLRELLADTNVQAVLTMLANMSKKEIR 240 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 36/79 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVG+RIRL R G S ++L GI+ + + E+G S L+ ++E L Sbjct: 72 INVGERIRLLRTEKGWSLQELACRAGISASYLSEIERGTVYPSLSTLKRLAEELGVAPVT 131 Query: 73 FFDVSPTVCSDISSEENNV 91 F T+ + + + Sbjct: 132 FLGQQGTLGARLRALREEY 150 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 27/72 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR R GMS L I+ + + E+G R ++ +++ L + + Sbjct: 5 GERIRALREEKGMSLHDLARKAQISLSYLSEIERGTKRPSLRTIEKLAQALNVSKARLVE 64 Query: 76 VSPTVCSDISSE 87 E Sbjct: 65 PETKEGKINVGE 76 >gi|297587137|ref|ZP_06945782.1| XRE family transcriptional regulator [Finegoldia magna ATCC 53516] gi|297575118|gb|EFH93837.1| XRE family transcriptional regulator [Finegoldia magna ATCC 53516] Length = 134 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 3/118 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFFF 74 G +++ R G++Q +L + LG+T + + YE R + I+E I+F Sbjct: 4 GAKLKQLREDRGLTQTELADKLGVTLKTISNYETKGTRPRTQDMYKKIAEFFNVDINFLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIELVRSIVSSE 130 V D + + + L+ F + + + + + ++ Sbjct: 64 TVEDNFVLDSAKKFGYSGKKDAENLVDNLSGLFAGGSLPEEDKDKLFNAIAEAYYEAK 121 >gi|210610650|ref|ZP_03288550.1| hypothetical protein CLONEX_00740 [Clostridium nexile DSM 1787] gi|210152372|gb|EEA83378.1| hypothetical protein CLONEX_00740 [Clostridium nexile DSM 1787] Length = 124 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 2/106 (1%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K P+P +++GKR+R+ R+ +QE+ E LG++ K E+G + + +L H+ Sbjct: 12 QENKAPDPFYVDMGKRLRIVRIKANYTQEQFAEILGMSTAYYGKIERGEHGLSLKKLVHV 71 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 E L I++ + + + + + L+ + Sbjct: 72 YEKLNIDINYLLTGAKSSSFTVDAIIKEC--PVDKRYDLEQLLKYA 115 >gi|197284093|ref|YP_002149965.1| transcriptional regulator [Proteus mirabilis HI4320] gi|227358035|ref|ZP_03842377.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|194681580|emb|CAR40549.1| putative transcriptional regulator [Proteus mirabilis HI4320] gi|227161770|gb|EEI46802.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 98 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 35/65 (53%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ +G +IR +R L +S + + E +G++ QQ +YE G+ ++ L I++ L Sbjct: 6 PISQIIGHKIRQQRQHLRLSAKAVAERVGVSQQQFSRYENGLCKIDVDMLFLIAKELNVT 65 Query: 70 ISFFF 74 + F Sbjct: 66 PTAFL 70 >gi|322830791|ref|YP_004210818.1| XRE family transcriptional regulator [Rahnella sp. Y9602] gi|321165992|gb|ADW71691.1| transcriptional regulator, XRE family [Rahnella sp. Y9602] Length = 188 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 1/95 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G +++ R G S + E G++ + + E+G + + L I+ L S F Sbjct: 7 HIGSQLKAVRSERGWSLSQTAEHTGVSKAMLGQIERGESSPTVATLWKIASGLNVSFSEF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + +P S + F S G+++ F Sbjct: 67 LE-TPPAQSAALHRHGLLTTFNSDTSGMRVVPLFP 100 >gi|260589804|ref|ZP_05855717.1| putative helix-turn-helix protein [Blautia hansenii DSM 20583] gi|260539845|gb|EEX20414.1| putative helix-turn-helix protein [Blautia hansenii DSM 20583] Length = 336 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 1/101 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE+L E +G++ Q + K+E + +R+ +SEV + Sbjct: 1 MILADKIVNLRKRAGWSQEELAEKMGVSRQSISKWEGAQSVPDMNRILKLSEVFCVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 I + + + G L + ++ + Sbjct: 61 LLRDDIEEVPCIVNPLEE-AEPLEDSKGETLIKVSLETANE 100 >gi|225570293|ref|ZP_03779318.1| hypothetical protein CLOHYLEM_06389 [Clostridium hylemonae DSM 15053] gi|225160825|gb|EEG73444.1| hypothetical protein CLOHYLEM_06389 [Clostridium hylemonae DSM 15053] Length = 262 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 34/85 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R ++QE+L E L ++ + K+E G L+ IS+ + Sbjct: 66 EKLQKLRKSKNLTQEQLAEILSVSRTAISKWESGRGYPSIDSLKEISKFFTISLDDLLSS 125 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 + + + + FI GL Sbjct: 126 EEILNAAQEDTDRKIHHFIDLTFGL 150 >gi|239820608|ref|YP_002947793.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805461|gb|ACS22527.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 81 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P + +G I+ R G+SQE+L + + E+G+ G + I+ L Sbjct: 11 DPALLALGTAIKALRKTHGISQEELAHRSHVDRSYMSSIERGMQNPGVMTVVQIAAGLGV 70 Query: 69 PISFF 73 ++ Sbjct: 71 SVAEL 75 >gi|260892597|ref|YP_003238694.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260864738|gb|ACX51844.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 151 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 57/113 (50%), Gaps = 2/113 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R+ G++Q +L + L + + + KYE+G NR A L+ ++++LE F Sbjct: 9 LGLRIKFARLRKGLTQAELAQKLNVHPETLGKYERGTNRPDAETLRKLADILEVSTDFLV 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVRS 125 + SS + +V ++ ++ +F ++ +V + + ++++ Sbjct: 69 GRTNDPSPIPSSLDADVETYLEKIVKGEIPIHFDGVERITPEVLEDLRTILKA 121 >gi|317054283|ref|YP_004118308.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952278|gb|ADU71752.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 192 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 1/94 (1%) Query: 1 MVGNKK-IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K + ++I +G++++ R G S L E G++ + K E+G + A+ L Sbjct: 1 MSDEKSSKEDSINIRIGQKVKAEREKRGWSLTDLAENSGVSRAMIHKIERGESSPTATLL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 ++ + +S +S + + + Sbjct: 61 ARLAGSFDMSMSQLIALSEVQTGTLIRQAQQPVW 94 >gi|255598541|ref|XP_002537032.1| conserved hypothetical protein [Ricinus communis] gi|223517747|gb|EEF25351.1| conserved hypothetical protein [Ricinus communis] Length = 318 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 4/119 (3%) Query: 7 IPNPVDIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 P+P D + +R+R R +G+SQE + LGI+ V E G +V A L +S Sbjct: 2 TPDPTDEQRLLLAQRLREAREYVGLSQEDVATALGISRPAVTNIEAGTRKVEAVELDKLS 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL-NRYFIQIDDVKVRQKIIE 121 ++ + FF V +S D +L R +D+ + R +I + Sbjct: 62 QLYGKTVQFFLTGESNVQDTRVVFLARATHGLSDRDFEELGRRAAEVLDEFRARDRIKD 120 >gi|190889915|ref|YP_001976457.1| transcriptional regulator protein, LacI family [Rhizobium etli CIAT 652] gi|190695194|gb|ACE89279.1| probable transcriptional regulator protein, LacI family [Rhizobium etli CIAT 652] Length = 189 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 37/87 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + ++ +G RIR R+ G++ + L G++ + + E+ AS L I L Sbjct: 1 MEEQLEQAIGIRIRKLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMD 93 +S FF S ++ ++ + Sbjct: 61 GLSLSAFFAEEGQQASPLARRQDQQVW 87 >gi|167771744|ref|ZP_02443797.1| hypothetical protein ANACOL_03116 [Anaerotruncus colihominis DSM 17241] gi|167666384|gb|EDS10514.1| hypothetical protein ANACOL_03116 [Anaerotruncus colihominis DSM 17241] Length = 132 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 4/115 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G I R ++Q +L E L IT Q V K+E G S LQ + + L ++ Sbjct: 4 KKIGAFIAQCRKEKSLTQIQLAELLDITNQAVSKWENGRGMPDVSLLQPLCDALGISLNE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR----YFIQIDDVKVRQKIIELV 123 F + + + + + + F +V + +IEL Sbjct: 64 LFSGEHISAEEYKGKAEENISKLYKEKQIANLKPIKYLFSICSNVTLLVAVIELA 118 >gi|110632911|ref|YP_673119.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110283895|gb|ABG61954.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 106 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 1/106 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPIS 71 + G+RI+ R G + + L + G + + K R A +L I+ L + Sbjct: 1 MKFGERIKDLRTKKGFTLDHLAQETGSSKSYIWELENKNPPRPSAEKLSAIASALGVTVD 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + F + + + R +I D K R+ Sbjct: 61 YLFGADAQTLGEAEDTAFFRQYSGLPEETRRQIREMARILDTKSRK 106 >gi|171779415|ref|ZP_02920379.1| hypothetical protein STRINF_01260 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282032|gb|EDT47463.1| hypothetical protein STRINF_01260 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 226 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 44/125 (35%), Gaps = 26/125 (20%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R G SQ L + L I+ +E G + L +S++ + ++F Sbjct: 4 GEKLKALRQENGYSQADLAKRLQISRASYFNWENGKTKPNQKNLGQLSQIFKVDETYFLS 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + ++Q+ + R K+ ++++ E++ Sbjct: 64 E------------------------HDIVNTYLQL-NPDNRLKLENYAKNLLK-EQEIVK 97 Query: 136 IEEEC 140 + Sbjct: 98 PLPKL 102 >gi|325693715|gb|EGD35634.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] gi|332364198|gb|EGJ41974.1| XRE family transcriptional regulator [Streptococcus sanguinis SK355] Length = 205 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R + G+SQE L E LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKVRGISQEGLAEKLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 E++ I++ QL+ F+ + Sbjct: 61 LLKG-IEPVVQKEEEQSIKHRRIASNICYQLSLGFVGL 97 >gi|302337267|ref|YP_003802473.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634452|gb|ADK79879.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 222 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 5/96 (5%) Query: 7 IPNPVDIN-----VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + VD+ +G RIR +R M +L E G+T + + E+ + + L+ Sbjct: 1 MGDDVDVAKVNLTLGSRIRAQRNKHNMKISELAELTGLTSSTISQVERALISPSIATLKK 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 I + + PISF FD S + Sbjct: 61 ICDAMNIPISFLFDGVEENDSQSEENVVTQDTTQAD 96 >gi|257451797|ref|ZP_05617096.1| SOS-response transcriptional repressors [Fusobacterium sp. 3_1_5R] gi|317058353|ref|ZP_07922838.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R] gi|313684029|gb|EFS20864.1| SOS-response transcriptional repressor [Fusobacterium sp. 3_1_5R] Length = 208 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK+ + G +I R ++QE+ + G+T + KYE G + L + Sbjct: 1 MKEKKLSETI----GDKILKLRKETALTQEQFSKIAGVTPLSILKYESGERLISIETLLN 56 Query: 62 ISEVLESPISFFFDVS 77 I+ + PIS+F + Sbjct: 57 IANYFKIPISYFLGEN 72 >gi|169349664|ref|ZP_02866602.1| hypothetical protein CLOSPI_00402 [Clostridium spiroforme DSM 1552] gi|169293739|gb|EDS75872.1| hypothetical protein CLOSPI_00402 [Clostridium spiroforme DSM 1552] Length = 206 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFF 74 G+RI+ R G++QE+LG LG+ + KYE + +Q +SE+ E P ++F Sbjct: 3 GQRIKKLRKEKGLTQEQLGNLLGVKKSAIAKYENNRVENLKKETIQKLSEIFEVPATYFL 62 Query: 75 DVSPTVCSDISSE 87 + T I++ Sbjct: 63 GIDETNQPTITNS 75 >gi|326390746|ref|ZP_08212299.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993140|gb|EGD51579.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 160 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRI+ R G++Q+ L LG++ + V YE LQ I++ + + Sbjct: 1 MLGKRIKELRKKKGLTQKDLALYLGVSDRAVGYYENEQRTPPPDILQKIADFFNVSVDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 + + + + I Sbjct: 61 LGRTDNPSEIKNFSKEISKNPIINQP 86 >gi|307320352|ref|ZP_07599770.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306894074|gb|EFN24842.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 472 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 8/128 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R ++Q + E +GI+ + + E V A+ L ++E + I+ Sbjct: 6 LYIGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIAE 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 SE + F + LQ + Q L +++S + Sbjct: 66 LSSGESDRLLSALSEALSDPLFETYSPSLQELKLVAQNAP--------GLAHALISCHQA 117 Query: 133 YRTIEEEC 140 YR E+ Sbjct: 118 YRRNSEQL 125 >gi|251779491|ref|ZP_04822411.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083806|gb|EES49696.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 164 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+GK I+ R + G++Q++ G + + ++KYE G + S I+ I Sbjct: 9 INIGKNIKHYRKLEGLTQKEFGAKIHKSEISIRKYESGKGNIPMSTFFDIARSFNINIVD 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 I + + +T Sbjct: 69 LLRNEEGRILGIEKDIYEDLRKFATN 94 >gi|118445204|ref|YP_891173.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196047678|ref|ZP_03114883.1| transcriptional regulator [Bacillus cereus 03BB108] gi|118419765|gb|ABK88183.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196021503|gb|EDX60205.1| transcriptional regulator [Bacillus cereus 03BB108] Length = 116 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 6/109 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ R M+QE+LG+ +G++ + +EKG G L+ I++ + Sbjct: 1 MIGEKIKELRKNSKMTQEQLGDAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 S E N D + +G + + + + ++ +L Sbjct: 61 LGRSEDP------ELNEEEDKTVSEEGKNILAIIESLPEDERKKAWEQL 103 >gi|228912350|ref|ZP_04076044.1| hypothetical protein bthur0013_64220 [Bacillus thuringiensis IBL 200] gi|228847298|gb|EEM92258.1| hypothetical protein bthur0013_64220 [Bacillus thuringiensis IBL 200] Length = 108 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 32/90 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ KR+ R G +Q + L I +E G A + +++E+ I Sbjct: 3 HLSKRLAELRKKQGYTQFDVAYRLNIARTTYANWEYGKADPDADSIMNLAEIYNVSIDEL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQL 103 F + + S + + + D L Sbjct: 63 FGRNAPLESKLEQIKVAISDLPLQKQQEVL 92 >gi|229080834|ref|ZP_04213352.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2] gi|228702568|gb|EEL55036.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2] Length = 262 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKKKGLSQEALAEKLSTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSDISS 86 + ++ Sbjct: 64 ETAEQSNENVD 74 >gi|332653067|ref|ZP_08418812.1| transcriptional regulator [Ruminococcaceae bacterium D16] gi|332518213|gb|EGJ47816.1| transcriptional regulator [Ruminococcaceae bacterium D16] Length = 285 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 38/78 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I+ R LG+SQEKL E +G++ Q V K+E G +L ++ VLE + Sbjct: 3 MTIGEIIQRERTRLGLSQEKLAEQVGVSRQAVSKWELGDAVPDTDKLVPLARVLEISVDT 62 Query: 73 FFDVSPTVCSDISSEENN 90 D P + E Sbjct: 63 LLDHHPQETEETPKEIEE 80 >gi|294666246|ref|ZP_06731497.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603955|gb|EFF47355.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 149 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 47/131 (35%), Gaps = 11/131 (8%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R G++Q +LG + + Q+ +YE G L +++ + Sbjct: 13 RLRNARERAGLTQRELGAEADVNYSQISRYEHGTAFPRPGVLLRLAKATGVSPEYLRSGG 72 Query: 78 ----------PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + + + + G+ ++ F ++ + + + + +R++ Sbjct: 73 VPVADEVAYYEQLRPQLPKAAVEAFEAQAVKSGMPVDALFARL-EALWIKTVRDELRAMA 131 Query: 128 SSEKKYRTIEE 138 + ++ + Sbjct: 132 AESERAADAAK 142 >gi|257792132|ref|YP_003182738.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476029|gb|ACV56349.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 247 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K + +++ + +R+ R G SQE+L E LG++ Q V K+E+ + L Sbjct: 1 MSPTSKKGSFMNVEIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLI 60 Query: 61 HISEVLESP 69 ++++ Sbjct: 61 ALAKLYGVS 69 >gi|300774987|ref|ZP_07084850.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300506802|gb|EFK37937.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 123 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 8/131 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R SQ ++ L I+ K+E + +L I+EV E I Sbjct: 1 MSLGTKLKQLRQRNNWSQAEVAYKLDISQPAYNKWESDQGKPSLDKLGKIAEVFEIEIQD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F+ V ++ EN+ + + I ++ Q II+ I + Sbjct: 61 LFESEGNVIISNNTFENSNIVYPKDSTV--------NIQSPELLQSIIKNQEQITKLLEA 112 Query: 133 YRTIEEECMVE 143 + E + + Sbjct: 113 QSKLIENLLKK 123 >gi|148509166|gb|ABQ81804.1| transcriptional regulator [Pseudomonas alkylphenolia] Length = 135 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 12/115 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R LG++Q G+ G+ KYE G A L ++ + Sbjct: 4 IGARLREERERLGLTQRVFGDIGGVEPNAQGKYESGERTPKADYLAAVAT-RGVDALYVL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + T+ S +P+ +L F + + I +L+ S+ ++ Sbjct: 63 SGTRTLVLQGS----------LSPEEERLLGAFRGLP-AADQAAIAQLLGSLANA 106 >gi|150016491|ref|YP_001308745.1| helix-turn-helix domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149902956|gb|ABR33789.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB 8052] Length = 123 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 49/119 (41%), Gaps = 1/119 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I++ R + Q++L E GIT + +YE G + ++ VL + Sbjct: 4 IGEKIQILREERNLKQKELAELAGITEATLSRYENGKREPKGEIISKLANVLNVSTDYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + N+ + + +L + +I++ + I+ ++ ++K Sbjct: 64 -GRNDIITSSVEPTGNLAEQVGLKLIKELEKDGYKIEEKDLPNLILAAKITLAQNKKNQ 121 >gi|293364378|ref|ZP_06611104.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307702656|ref|ZP_07639608.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|291317224|gb|EFE57651.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|307623772|gb|EFO02757.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] Length = 165 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 33/81 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + I D Sbjct: 61 LLLDENSEKGSIEVILEEDKD 81 >gi|295135558|ref|YP_003586234.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294983573|gb|ADF54038.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 140 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 11/131 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R + GM QE L LGI+ Q V EK V L+ ISEVL Sbjct: 21 HIGRKISRIRELRGMKQEALAAELGISQQSVSNLEKSE-NVDEGTLKKISEVLNVSPEAI 79 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + +I + + + +KI+EL +V +EK+ Sbjct: 80 RHFTEEAVFNIINNTFKDNSANNNNYFCTI----------DPVEKIVELYERLVQAEKEK 129 Query: 134 RTIEEECMVEQ 144 E+ + ++ Sbjct: 130 NAYLEKLLDKK 140 >gi|229087336|ref|ZP_04219477.1| hypothetical protein bcere0022_39060 [Bacillus cereus Rock3-44] gi|228695973|gb|EEL48817.1| hypothetical protein bcere0022_39060 [Bacillus cereus Rock3-44] Length = 185 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 41/91 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D N+G +I+ R+ M+ +++ E ++ + + E+ + + L+ +SE L Sbjct: 1 MDENIGNKIKALRLEKRMTLKQVSEKTNLSISFISQVERSKSSITLESLKKLSEALHVSP 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 S+FF ++I + ++ + Sbjct: 61 SYFFAAEQKSNTNIIRRGQQQEEHVNHSHFV 91 >gi|229095638|ref|ZP_04226619.1| hypothetical protein bcere0020_8910 [Bacillus cereus Rock3-29] gi|228687770|gb|EEL41667.1| hypothetical protein bcere0020_8910 [Bacillus cereus Rock3-29] Length = 149 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|320449325|ref|YP_004201421.1| methyltransferase [Thermus scotoductus SA-01] gi|320149494|gb|ADW20872.1| methyltransferase [Thermus scotoductus SA-01] Length = 570 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 7/123 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N + VG+ +R R G++ L GI + E G + L ++ L Sbjct: 1 MKNELSYEVGQNLRRLRQARGLTLSGLAAKAGIAKSLLHALEAGRANPTLATLWALARAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDF-------ISTPDGLQLNRYFIQIDDVKVRQKI 119 E P P + + D L + + + + +R+++ Sbjct: 61 EVPFGELVQARPVGDEGVMVHLIEQTWGRVGERLEVYRMDLLPRSVRWAEAHEPGLRERV 120 Query: 120 IEL 122 I L Sbjct: 121 IGL 123 >gi|317489385|ref|ZP_07947897.1| hypothetical protein HMPREF1023_01596 [Eggerthella sp. 1_3_56FAA] gi|316911492|gb|EFV33089.1| hypothetical protein HMPREF1023_01596 [Eggerthella sp. 1_3_56FAA] Length = 197 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 29/76 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R G+SQ+ L + ++ Q V +E L +S + + + Sbjct: 1 MELGSQIKRHRTERGLSQDDLAAKIYVSRQTVSSWENDKTYPDVESLLLLSVLFDVTVDE 60 Query: 73 FFDVSPTVCSDISSEE 88 + S + Sbjct: 61 LIKGDVEAMKEAISND 76 >gi|291540195|emb|CBL13306.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 107 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 37/72 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R + M+Q++L + GI ++KYE G +LQ I+E L ++ F Sbjct: 7 IGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGERNPKPDQLQKIAEALGISVTVFL 66 Query: 75 DVSPTVCSDISS 86 D SD+ S Sbjct: 67 DYDINTISDVLS 78 >gi|261420641|ref|YP_003254323.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319768311|ref|YP_004133812.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] gi|261377098|gb|ACX79841.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61] gi|317113177|gb|ADU95669.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] Length = 135 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 43/127 (33%), Gaps = 6/127 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ R +QE+L E L ++ Q+ K+E G L+ + ++ F Sbjct: 4 LGETLKQLRKQRRWTQEQLAEQLNVSRSQISKWENGSLLPDVQSLEKLCQLFNISADFLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + L + + ++ + + ++ K R Sbjct: 64 GGETRQRELLREVTDMYGT--ADVHETVLAALDYLLHNQEMSEAMY----ALAKLPDKKR 117 Query: 135 TIEEECM 141 E + Sbjct: 118 KHVETMI 124 >gi|218463407|ref|ZP_03503498.1| MerR family transcriptional regulator [Rhizobium etli Kim 5] gi|218663344|ref|ZP_03519274.1| MerR family transcriptional regulator [Rhizobium etli IE4771] Length = 182 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 34/84 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + + + Sbjct: 1 MSVDIGSRLRHLRLAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF P +++ Sbjct: 61 AEFFAFEPERPKKAFYAAEELVEI 84 >gi|81428935|ref|YP_395935.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78610577|emb|CAI55628.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 287 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 1/103 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ R+ G SQ L + L ++ Q + K+E + + L ++++ ++ Sbjct: 1 MLIGQRLKQFRLGAGYSQRTLADKLNVSRQVISKWETDKSVPDLNLLVGLAQLYNVSLTE 60 Query: 73 FFDVSP-TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 DV T + + T + + L+ I + Sbjct: 61 LLDVETVTKSGSLLTRLRQHWHLSETEETVPLSALGQLIQKPE 103 >gi|301166893|emb|CBW26471.1| putative helix-turn-helix DNA-binding protein [Bacteriovorax marinus SJ] Length = 189 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 27/73 (36%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N+ N + + I+ R +Q++L E GI + E G S + Sbjct: 3 MSQNELDINAFNSYISHNIKFLRAKRNYTQKQLSEVSGIPRTTLTNIESGEGNPSLSNII 62 Query: 61 HISEVLESPISFF 73 +++ L I Sbjct: 63 KLAKALNVSIDLL 75 >gi|229008902|ref|ZP_04166256.1| hypothetical protein bmyco0002_56320 [Bacillus mycoides Rock1-4] gi|228752339|gb|EEM02013.1| hypothetical protein bmyco0002_56320 [Bacillus mycoides Rock1-4] Length = 218 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 39/81 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK I+ R +SQ++LGE G++ + V +EKG+ +Q I++ S Sbjct: 1 MSIGKNIKKLRDKHNLSQKELGEIAGVSDKAVSTWEKGLKEPRMGVIQKIADHFGILKSD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + + I + + + Sbjct: 61 IIEDQDSKVTHIRPNQPEIKN 81 >gi|206900818|ref|YP_002250397.1| transcriptional regulator, AraC family [Dictyoglomus thermophilum H-6-12] gi|206739921|gb|ACI18979.1| transcriptional regulator, AraC family [Dictyoglomus thermophilum H-6-12] Length = 105 Score = 52.9 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 19/114 (16%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVGKRIR R M E L E G++ + E+G+ L+ I++ P S+ Sbjct: 1 MNVGKRIRETRKKHNMKLEDLAEKTGLSLSYISLIERGLKNPSLKALERIAKAFNLPTSY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 FF + F+ T L D R+ II+L++S+ Sbjct: 61 FFSEDNDETIET---------FLRTKTSL----------DEDERRMIIQLIKSL 95 >gi|326943495|gb|AEA19388.1| hypothetical protein CT43_P281045 [Bacillus thuringiensis serovar chinensis CT-43] Length = 108 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 32/90 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ KR+ R G +Q + L I +E G A + +++E+ I Sbjct: 3 HLSKRLAELRKKQGYTQSDISHRLNIARTTYANWEYGKADPDADSIMNLAEIHNVSIDEL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQL 103 F + + S + + + D L Sbjct: 63 FGRNAPLESKLELIKVAISDLPPQKQQEVL 92 >gi|323702564|ref|ZP_08114227.1| helix-turn-helix domain protein [Desulfotomaculum nigrificans DSM 574] gi|323532538|gb|EGB22414.1| helix-turn-helix domain protein [Desulfotomaculum nigrificans DSM 574] Length = 380 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 13/128 (10%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + +G+ I R +S E+L E + +T Q + Y KG + + +L ++ P+ Sbjct: 3 IAVIIGRNIDNLRNSHNVSLEQLAELINVTRQTMSNYIKGKQIIDSGKLAVLARYFNKPL 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 +F S + +N F I ++ +KI ++ + SE Sbjct: 63 EYFLAEEHNELSFMFRADNPK-------------ENFNDILSSRINRKISTVLEILAMSE 109 Query: 131 KKYRTIEE 138 +K + E Sbjct: 110 RKLAMVPE 117 >gi|254428879|ref|ZP_05042586.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881] gi|196195048|gb|EDX90007.1| Helix-turn-helix domain protein [Alcanivorax sp. DG881] Length = 119 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 3/107 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ LGM+QE+LG L +T + +E G + G L + VL + Sbjct: 15 ERLKAARLALGMTQEQLGFELEVTKSTISAWENGRDSPGFRLLPKLKAVLGVSLDHLICG 74 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 S ++ + QL + + ++ VK RQ ++ ++ Sbjct: 75 D--QVEGASELKSKYDAQVRNDAEAQLLKGYRRL-SVKRRQGLLAMI 118 >gi|190570733|ref|YP_001975091.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019309|ref|ZP_03335116.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|213019398|ref|ZP_03335204.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357005|emb|CAQ54398.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994820|gb|EEB55462.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995418|gb|EEB56059.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 184 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 53/129 (41%), Gaps = 6/129 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + +++R R+ + + L + I + + +YE+G + +L+ ++ L P Sbjct: 5 SIRYQIAQKVRSWRLKRKYTLKVLIDKTSINYHTLLRYEQGTCGIPIEKLKILAGALSIP 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I F EN+ D L + +IQI + ++R+ + L +SI + Sbjct: 65 IRNLF------PKRKVLRENSCFDKAKEQAMYNLMQGYIQIGERELRKVVYALTQSIQAE 118 Query: 130 EKKYRTIEE 138 ++ Sbjct: 119 KESNIKAAR 127 >gi|15900101|ref|NP_344705.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae TIGR4] gi|14971630|gb|AAK74345.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae TIGR4] Length = 288 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ RR L MSQ +L E + Q+ + E G GA L +++ L+ + +FFD Sbjct: 8 RLKNRRKELKMSQRELAEGI-CKQGQISRLESGEFTPGADFLNALAKKLKVSMDYFFDEQ 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + SE + T + +Y ++++VK + Sbjct: 67 VVEKVEELSEFKKLAQTFITNRNYESLKYIYELENVKAHR 106 >gi|16265194|ref|NP_437986.1| hypothetical protein SM_b20754 [Sinorhizobium meliloti 1021] gi|15141334|emb|CAC49846.1| probable transcriptional regulator [Sinorhizobium meliloti 1021] Length = 491 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 8/128 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R ++Q + E +GI+ + + E V A+ L ++E + I+ Sbjct: 25 LYIGRKVRDLRDGKRLTQGQFAERIGISTSYLNQIENNQRPVSAAVLLALAEKFQIDIAE 84 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 SE + F + LQ + Q L +++S + Sbjct: 85 LSSGESDRLLSALSEALSDPLFETYSPSLQELKLVAQNAP--------GLAHALISCHQA 136 Query: 133 YRTIEEEC 140 YR E+ Sbjct: 137 YRRNSEQL 144 >gi|75762759|ref|ZP_00742588.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489747|gb|EAO53134.1| Transcriptional regulator [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 136 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 32/74 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R G+SQE L E L T Q V K+E G +L I +V E + + Sbjct: 1 MEFGEKLFKLRKEKGLSQEVLAEKLKTTRQAVSKWENGQGFPETEKLIMIGKVFEVSLDY 60 Query: 73 FFDVSPTVCSDISS 86 + ++ Sbjct: 61 LLKETAEQSNENVE 74 >gi|227502499|ref|ZP_03932548.1| transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|306835073|ref|ZP_07468116.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] gi|227076772|gb|EEI14735.1| transcriptional regulator [Corynebacterium accolens ATCC 49725] gi|304569054|gb|EFM44576.1| DNA-binding protein [Corynebacterium accolens ATCC 49726] Length = 469 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 10/128 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+EV +FF Sbjct: 5 YVGSRLRQLRRERDLSQASLAGTLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + +P L +L+ + R++V ++ Sbjct: 65 SRDDDSRLLAEIQDVIQDKELCPSPVELQELSELVYNHPT---------VARTLVDVHRR 115 Query: 133 YRTIEEEC 140 YR + ++ Sbjct: 116 YRNVRDKL 123 >gi|226324192|ref|ZP_03799710.1| hypothetical protein COPCOM_01971 [Coprococcus comes ATCC 27758] gi|225207741|gb|EEG90095.1| hypothetical protein COPCOM_01971 [Coprococcus comes ATCC 27758] Length = 169 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 7/105 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE+L L + Q V K+E G++ +S L ++ L + +S Sbjct: 4 ENIKRIRKSKGLSQEELAIKLNVVRQTVSKWENGLSVPDSSMLIILANELNTTVSELL-- 61 Query: 77 SPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDDVKVRQKII 120 ++ + + +S + + L I VK + I+ Sbjct: 62 ----GEPVAEPTTDDLKILSEKLEVINLQLAKRSITKVKTIRWIL 102 >gi|225019955|ref|ZP_03709147.1| hypothetical protein CLOSTMETH_03914 [Clostridium methylpentosum DSM 5476] gi|224947319|gb|EEG28528.1| hypothetical protein CLOSTMETH_03914 [Clostridium methylpentosum DSM 5476] Length = 127 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 6/110 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + K+++ R+ G+ Q ++ E + I + YE L ++ I + Sbjct: 1 MEIAKKLQELRIEKGLKQTEVAEAINIVQSTLANYESNATLPDYPILIKLANFYNVSIDY 60 Query: 73 FFDVSPTVC--SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 D SPT D + IS+ ++ + +I D R I+ Sbjct: 61 LLDNSPTKLSWQDAAENIEFSSGSISSLKISEMLKSM-KISD---RDAIL 106 >gi|217967072|ref|YP_002352578.1| XRE family transcriptional regulator [Dictyoglomus turgidum DSM 6724] gi|217336171|gb|ACK41964.1| transcriptional regulator, XRE family [Dictyoglomus turgidum DSM 6724] Length = 105 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 19/123 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVGKRIR R M E L E G++ + E+G+ L+ I++ L P S+ Sbjct: 1 MNVGKRIREIRKKHNMKLEDLAEKTGLSLSYISLIERGLKNPSLKALERIAQALNLPTSY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF + F+ T L D R+ II+L++S+ + Sbjct: 61 FFSEDNDETIET---------FLRTKTSL----------DEDERRMIIQLIKSLEKKKGV 101 Query: 133 YRT 135 RT Sbjct: 102 RRT 104 >gi|325568711|ref|ZP_08145004.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157749|gb|EGC69905.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 263 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 34/72 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK I+ R ++QE+L + +T Q + K+E G + ++ +S E + + Sbjct: 1 MDIGKIIKEERTKRNLTQEQLAQEFFVTRQLISKWENGKSYPDLDQVVKLSNYFELTLDY 60 Query: 73 FFDVSPTVCSDI 84 + ++ Sbjct: 61 LLKEDKQMVQEL 72 >gi|126740655|ref|ZP_01756341.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126718170|gb|EBA14886.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 138 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 55/114 (48%), Gaps = 1/114 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R GM+Q +L +GI + +E+ ++ A++L +S +L +S+ Sbjct: 23 GDRVAAAREAAGMTQAELSRRMGIKKSTLTGWEQDLSEPRANKLSTLSGLLNVSMSWLLT 82 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S+ + + + DF + L+ R ++ ++ + ++ + +R+++ + Sbjct: 83 GEGEGMSEPADQVIELSDFGAVLKELRELRSEMR-NNAERAGRLEKKLRALLQT 135 >gi|331085854|ref|ZP_08334937.1| hypothetical protein HMPREF0987_01240 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406777|gb|EGG86282.1| hypothetical protein HMPREF0987_01240 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 179 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G ++R RM G++QE+L + ++ + + E+ + + L + + L + + Sbjct: 1 MNIGNKLRELRMEKGLTQEELADRAELSKGFISQIERDLTSPSIATLVDLLQCLGTNLKD 60 Query: 73 FFDVSPTVCSDISSEE 88 FF E+ Sbjct: 61 FFSDDSDEQIVFPKED 76 >gi|330467102|ref|YP_004404845.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810073|gb|AEB44245.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 476 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 8/125 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +KK + ++R R G++Q +L L I+ + + E + A L Sbjct: 1 MTADKK------LYAHAKLRRLRREHGLTQAELARRLDISTSYLNQIENSQRTLTAPILL 54 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +++VL F D + D +++ + ++ Sbjct: 55 RLAKVLGVDPEHFADTDAERLGADVRTALADEASGVSVDPVEVVELVRDYPTAA--RALV 112 Query: 121 ELVRS 125 L + Sbjct: 113 ALHQR 117 >gi|210617044|ref|ZP_03291379.1| hypothetical protein CLONEX_03601 [Clostridium nexile DSM 1787] gi|210149567|gb|EEA80576.1| hypothetical protein CLONEX_03601 [Clostridium nexile DSM 1787] Length = 333 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 33/84 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L E + ++ Q V K+E + S++ +S+V + Sbjct: 1 MILAEKIMELRKKNGWSQEELAEKIHVSRQSVSKWESSASIPDLSKILLLSQVFGVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 ++ + Sbjct: 61 LLRDDIEETQKAEIFVEETVEKAA 84 >gi|257469363|ref|ZP_05633457.1| hypothetical protein FulcA4_08479 [Fusobacterium ulcerans ATCC 49185] gi|317063609|ref|ZP_07928094.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313689285|gb|EFS26120.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 168 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DV 76 +I+ R GMSQEKL + LG++ Q V K+E G + ++ +S + E + DV Sbjct: 6 KIQQLRKQNGMSQEKLAQLLGVSRQSVSKWESGQSLPEIDKIIQLSNIFEVTTDYLLKDV 65 Query: 77 SPTVCSDISSEENN 90 + C DI +E Sbjct: 66 AEEKCIDILRKEKE 79 >gi|228919863|ref|ZP_04083219.1| hypothetical protein bthur0011_8830 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839764|gb|EEM85049.1| hypothetical protein bthur0011_8830 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 149 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|262199984|ref|YP_003271193.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262083331|gb|ACY19300.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 199 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 49/139 (35%), Gaps = 3/139 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +G+ R R L ++QE E + ++ + + E+G + I L Sbjct: 1 MNKDLAKTIGRAAREARTALQLTQEDAAERIHVSVEFYARIERGKSLPSIGTFARIVSAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P + + + +P+ +L+R + + + LV+ I Sbjct: 61 GVSADALLGARPPIATVAAGMPALWTPPSESPEMRRLSRRLRK-ARPATLRLVSLLVKEI 119 Query: 127 --VSSEKKYRTIEEECMVE 143 + E + E+ VE Sbjct: 120 ESAAGESQAGESEDGDSVE 138 >gi|154501121|ref|ZP_02039159.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC 29799] gi|150269867|gb|EDM97399.1| hypothetical protein BACCAP_04810 [Bacteroides capillosus ATCC 29799] Length = 89 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G RIR R G++QE+L E + ++ + K E G + + + + Sbjct: 9 GSRIRSLRKKRGLTQEQLAEKMNVSTPYIAKIETGKQTGPVELAVEFAAFFDVSLDYLL 67 >gi|150376382|ref|YP_001312978.1| hypothetical protein Smed_4240 [Sinorhizobium medicae WSM419] gi|150030929|gb|ABR63045.1| protein of unknown function DUF955 [Sinorhizobium medicae WSM419] Length = 472 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 8/128 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R ++Q + E +GI+ + + E V AS L ++E + I+ Sbjct: 6 LYIGRKVRDLRDGKRLTQAQFAERIGISTSYLNQIENNQRPVSASVLLALAEKFQIDIAE 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 SE + F + LQ + +Q L +++S + Sbjct: 66 LSSGESDRLLSALSEALSDPLFETYSPSLQELKLVVQNAP--------GLAHALISCHQA 117 Query: 133 YRTIEEEC 140 YR E+ Sbjct: 118 YRRNSEQL 125 >gi|90425003|ref|YP_533373.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90107017|gb|ABD89054.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB18] Length = 471 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/127 (11%), Positives = 39/127 (30%), Gaps = 2/127 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R ++Q L LGI+ + + E + +++ I F Sbjct: 5 FLGVRLKRLREEHRLTQAALAAKLGISLSYLNQLENNQRPLTLPVALALNKTFGLDIQSF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + E T L ++ + + ++ L + + ++ Sbjct: 65 SEDDEARLIADLREAVADPALGETIATSDLREL--ALNMPAIGRTLVALSQRYRQAIEQS 122 Query: 134 RTIEEEC 140 + Sbjct: 123 AALSARL 129 >gi|327193279|gb|EGE60185.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 220 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 34/84 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + + + Sbjct: 39 MSVDIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGL 98 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF P +++ Sbjct: 99 AEFFAFEPERPKKAFYAAEELVEI 122 >gi|313890286|ref|ZP_07823919.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121340|gb|EFR44446.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 194 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 29/77 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++ R G SQE L E + ++ Q + +E + L + + + Sbjct: 1 MELGEKLSSCRKKAGFSQEDLAEKIYVSRQTISNWENNRSYPDIHSLIALVNLFNLSLDQ 60 Query: 73 FFDVSPTVCSDISSEEN 89 + I ++ Sbjct: 61 LVEGDIDEMKKIVQRDD 77 >gi|218507568|ref|ZP_03505446.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 167 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 34/84 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + + + Sbjct: 1 MSVDIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF P +++ Sbjct: 61 AEFFAFEPERPKKAFYAAEELVEI 84 >gi|190894990|ref|YP_001985283.1| putative transcriptional regulator [Rhizobium etli CIAT 652] gi|190700651|gb|ACE94733.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 203 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 34/84 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + + + Sbjct: 22 MSVDIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGL 81 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF P +++ Sbjct: 82 AEFFAFEPERPKKAFYAAEELVEI 105 >gi|145634268|ref|ZP_01789979.1| probable transcription regulator [Haemophilus influenzae PittAA] gi|145268712|gb|EDK08705.1| probable transcription regulator [Haemophilus influenzae PittAA] Length = 237 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R +S+ + E LG++ +Q +E AS + ++E LE ++ Sbjct: 11 IGNRIRELREFKKVSRNAMAEKLGLSLSALQNWETNQTEPVASMIITLAEELEVSPNYLL 70 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ 102 D +S + + ++ Sbjct: 71 TGETNATLDENSNRITLRESENSRSVAD 98 >gi|170729039|ref|YP_001763065.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814386|gb|ACA88970.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 327 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 2/106 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R LG SQE+L E + I+ Q V K+E + +++ ++++ E F Sbjct: 1 MILAEKIIRLRKQLGWSQEELAEKMAISRQSVSKWESANSIPDLNKIIKLADIFEVSTDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 S + + ++ +S Q +I + + K Sbjct: 61 LLKDEYEANSYNDEPKPSNLNQVSLEQATQYVN--SKIQEAALITK 104 >gi|317120977|ref|YP_004100980.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315590957|gb|ADU50253.1| transcriptional regulator, XRE family [Thermaerobacter marianensis DSM 12885] Length = 244 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 48/118 (40%), Gaps = 9/118 (7%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PV VG RIR R G+S ++L I+ + E+GV + ++++L Sbjct: 3 PDPV--AVGNRIRAARQAAGLSVKELARRAHISPSHLSDIERGVKHPSLAVAATLAQILG 60 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + + + + + ++ + P Q R+++++L+ + Sbjct: 61 RSLDWVVAGRDPLPDPV--DLRTLLRDPARPLWYQGVPL-----TEAAREQLVDLLDA 111 >gi|262283609|ref|ZP_06061374.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260666|gb|EEY79367.1| cro/CI family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 67 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 23/65 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q L + L + KYE G + + +++ I + Sbjct: 3 NRLKKLRKEKGLTQADLAKVLNTNQSRYGKYENGKTNLSIENAKKVAKYFGVTIDYLLGS 62 Query: 77 SPTVC 81 Sbjct: 63 ESDQT 67 >gi|315497496|ref|YP_004086300.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB 48] gi|315415508|gb|ADU12149.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB 48] Length = 470 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 15/140 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R L ++Q ++ E LG++ + E+ V A L ++ + + Sbjct: 8 LFLGGRVKRLRHDLNLTQTRMAEDLGVSPSYLNHLERNQRPVTAQVLLKLASTYDLDMRT 67 Query: 73 FFDVSPTVCSDISSEENNVMDF----ISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 F + +E + F + L V + ++ L R+ Sbjct: 68 FTAEADPSGEADLAEVLSDPLFKDLHAPRREIADLVAA-----SPTVAEAMLRLYRAY-- 120 Query: 129 SEKKYRTIEE----ECMVEQ 144 E+K R + + E + E Sbjct: 121 KERKVREVIDLSSAEILNEH 140 >gi|239943369|ref|ZP_04695306.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239989822|ref|ZP_04710486.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291446837|ref|ZP_06586227.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291349784|gb|EFE76688.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 213 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 8/114 (7%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V VG R+R R GM+ +L E GI + + E G + L ++EV P+ Sbjct: 20 VLAAVGPRLRELRRRHGMTLAELAERTGINESTLSRLEGGTRKPTLELLLPLAEVHAVPL 79 Query: 71 SFFF----DVSPTVCSDISSEENNVMDFISTPDGLQ----LNRYFIQIDDVKVR 116 P + + + +S P G+Q L R + +R Sbjct: 80 DELVGAPRTGDPRIHLRPVTRDGLTYVPLSRPGGVQAHKLLIRPSPAGTEPTLR 133 >gi|229526959|ref|ZP_04416356.1| transcriptional regulator Cro/CI family [Vibrio cholerae 12129(1)] gi|229335571|gb|EEO01051.1| transcriptional regulator Cro/CI family [Vibrio cholerae 12129(1)] Length = 70 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +P + G+++R R G+SQE L + GI + E+G + +++ ISE L Sbjct: 1 MKDPRLVAFGEKVRQTRKEKGLSQEALADLAGIDRSYMGHIERGDQNITLTKIYQISEAL 60 Query: 67 ESPISFFFDV 76 +S Sbjct: 61 RVSVSDLISG 70 >gi|295110461|emb|CBL24414.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 315 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 8/82 (9%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK +G ++ R ++QE+L E G++ + V ++E G N S L Sbjct: 1 MDTKK--------IGAFLKQCRKEKNLTQEQLAEKFGVSARTVSRWETGTNLPDLSILVE 52 Query: 62 ISEVLESPISFFFDVSPTVCSD 83 ++E + + D + + Sbjct: 53 LAEYYDVEMRELLDGERSQTMN 74 >gi|283782998|ref|YP_003373752.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|283441145|gb|ADB13611.1| DNA-binding protein [Gardnerella vaginalis 409-05] Length = 210 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ G++QE+L E + ++ V K+E G + L+ I++ L + Sbjct: 1 MLLGEKIRNARVEAGLTQEELAEMIMVSRAAVAKWEGGRGLPDVANLKVIADALGVTVDH 60 Query: 73 FFDVSPTVCSDISS 86 D + I Sbjct: 61 LLDKDNAIDLSIIK 74 >gi|228938970|ref|ZP_04101570.1| hypothetical protein bthur0008_16320 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971851|ref|ZP_04132472.1| hypothetical protein bthur0003_16290 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978459|ref|ZP_04138836.1| hypothetical protein bthur0002_16640 [Bacillus thuringiensis Bt407] gi|228781476|gb|EEM29677.1| hypothetical protein bthur0002_16640 [Bacillus thuringiensis Bt407] gi|228787941|gb|EEM35899.1| hypothetical protein bthur0003_16290 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820819|gb|EEM66844.1| hypothetical protein bthur0008_16320 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939471|gb|AEA15367.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 149 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSIGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIHNLILLSEMYNVTLDE 60 Query: 73 FFDV 76 Sbjct: 61 LIKG 64 >gi|239828436|ref|YP_002951060.1| XRE family transcriptional regulator [Geobacillus sp. WCH70] gi|239808729|gb|ACS25794.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70] Length = 137 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 50/131 (38%), Gaps = 6/131 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R +QE+L + L I+ Q+ K+E G LQ +S + + + F Sbjct: 3 MNLGEKLKYLRKQHNWTQEQLAQHLNISRSQISKWENGDLLPDVQSLQKLSNLYKVSVDF 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 T + L + Y Q + + + I S+ K Sbjct: 63 LIGKHTTKKELLREVNLLYQTDRIDEKMLDIIDYLRQ--NPNMEKTIY----SLTQLPVK 116 Query: 133 YRTIEEECMVE 143 R E +++ Sbjct: 117 KRRHLESIIIK 127 >gi|188991259|ref|YP_001903269.1| putative regulatory protein. [Xanthomonas campestris pv. campestris str. B100] gi|167733019|emb|CAP51217.1| putative regulatory protein [Xanthomonas campestris pv. campestris] Length = 91 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 30/84 (35%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K +P + G R+ R G+SQE+L G+ + E+G + + Sbjct: 8 MPEKAMPTDPRVLFGLRLAEVRKAKGLSQERLALESGLARSYLGGVERGQRNIALLNIYR 67 Query: 62 ISEVLESPISFFFDVSPTVCSDIS 85 ++E L + + Sbjct: 68 LAEALGVRPTSLLEPPSASSPGEP 91 >gi|218528591|ref|YP_002419407.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218520894|gb|ACK81479.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] Length = 198 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 27/73 (36%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P++ +G +IR R +S L ++ + K E G + + I+ L P Sbjct: 15 PLEKALGHQIRRLRRERDLSLSDLSSAADVSQSMISKIEHGAISPSLASINAIASALNVP 74 Query: 70 ISFFFDVSPTVCS 82 I+ F Sbjct: 75 ITALFAAFEETRD 87 >gi|327441616|dbj|BAK17981.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 260 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R SQE L E L + Q + K+E G ++ I + E I + Sbjct: 1 MEFGEKLFKLRKEKEYSQEALAEKLNTSRQAISKWENGQGFPETEKILMIGNIFEVSIDY 60 Query: 73 FFDVSPTVCSDISS 86 S + Sbjct: 61 LLKDSVENNEGNEA 74 >gi|291459407|ref|ZP_06598797.1| DNA-binding protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291418006|gb|EFE91725.1| DNA-binding protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 173 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R ++QE+L E L ++ + V ++E G N L I++ E I Sbjct: 6 IGALLKELRRQRAVTQEQLAEMLNVSRRTVSRWETGSNMPDLDILIEIADYYEIDIRELL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 D + V + + +L Sbjct: 66 DGERRSGQMEEEMKETVWKMLDYSNEKKL 94 >gi|257785038|ref|YP_003180255.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257473545|gb|ACV51664.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 235 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 36/82 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R+ +QE+L + L ++ Q V K+E +N S L ++ L + Sbjct: 8 LGRRIARLRLAKTATQERLAKELNVSPQAVSKWESDINYPDISLLPDLARFLGVSVDELL 67 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 + + + + + +S Sbjct: 68 SGASAFAQESVAAQEGTAEVVS 89 >gi|153954565|ref|YP_001395330.1| hypothetical protein CKL_1947 [Clostridium kluyveri DSM 555] gi|219855059|ref|YP_002472181.1| hypothetical protein CKR_1716 [Clostridium kluyveri NBRC 12016] gi|146347423|gb|EDK33959.1| Phage-related protein [Clostridium kluyveri DSM 555] gi|219568783|dbj|BAH06767.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 261 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 4/116 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG +I+ R ++Q++L E +G+T + +YE L I++ L+ I+ Sbjct: 1 MNVGAKIKEIRESKNLTQKQLAEKIGVTPVTITRYENNKREPSIETLNKIAKALDVTIND 60 Query: 73 FFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVR 124 TV + + + ++ +ST + ++R + D +I ++ + Sbjct: 61 LAGEKDTVTKKVLKQLISGGVNLEQLSTDTKIHIDRLNSLLKNDDATCDEIQQIAK 116 >gi|53714902|ref|YP_100894.1| putative transcriptional regulator [Bacteroides fragilis YCH46] gi|52217767|dbj|BAD50360.1| putative transcriptional regulator [Bacteroides fragilis YCH46] Length = 152 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 3/142 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++ V+++ G IR R+ + Q+ L + +T V KYEK + + L Sbjct: 1 METEEEIQNVNVHHGHNIRRTRIEKNIKQDALAALVNMTQPNVSKYEK-MRVIEDEMLNR 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENN--VMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + L P+ + + S + N + S+ + KI Sbjct: 60 FARALNVPVEYLKTLEEDAPSVVFENITNNVHDNKDSSVPITGYKGQDATTNSFNPIDKI 119 Query: 120 IELVRSIVSSEKKYRTIEEECM 141 EL ++ + + E+ + Sbjct: 120 TELYERLLEEKDEKYAALEKRI 141 >gi|325956739|ref|YP_004292151.1| Cro/CI family transcriptional regulator [Lactobacillus acidophilus 30SC] gi|325333304|gb|ADZ07212.1| Cro/CI family transcriptional regulator [Lactobacillus acidophilus 30SC] Length = 187 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 49/122 (40%), Gaps = 5/122 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R+ + E + E +GI Q +KYE G + ++ P+++ V Sbjct: 2 NRLKKVRLERNYTLEDIEEKIGIDRAQYEKYENGDEKPTLGMWLKLAVYFNVPVAYLQGV 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 S +I + + P ++ FI I +++ +++ ++ E + I Sbjct: 62 SKIKDINILMDSQKFAKAVGVP---DVDPRFINIPKNEMKAAVLQ--ENLHDFEVIKKAI 116 Query: 137 EE 138 + Sbjct: 117 LD 118 >gi|293399884|ref|ZP_06644030.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306284|gb|EFE47527.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 168 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ R G++QE+ E + ++ + V ++E G N L IS+ E + Sbjct: 6 IGEFLKELRKQKGLTQEQFAEIVNVSNRTVSRWENGNNLPDLDILIEISDYYEIDLRELL 65 Query: 75 DVSPTVCS 82 + Sbjct: 66 NGEKKGEK 73 >gi|260428966|ref|ZP_05782943.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260419589|gb|EEX12842.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 205 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G R+R R G+S ++L ++ + + E+ ++ L ++ + P+S Sbjct: 22 DSTLGLRLRALRKSHGLSLKELSARASLSVGSLSQIERDLSSPSVRTLNKLATSFDVPLS 81 Query: 72 FFFDVSPTVCSD 83 +FF D Sbjct: 82 YFFADPAADEVD 93 >gi|253990606|ref|YP_003041962.1| regulatory protein DicA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782056|emb|CAQ85220.1| similar to dica, regulator of dicb encoded by prophage cp-933 (putative regulatory protein) [Photorhabdus asymbiotica] Length = 135 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 8/131 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R MSQ L E + ++ YE G+ V +S+ L + Sbjct: 7 IGARIKRLRNQQKMSQAALAELCGWASQSRIGNYESGIRNVSTDDAVILSKALGVSPAEL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + E L+L F ++ D + EL++++ ++ Y Sbjct: 67 MFGDAESSQENETSETCQELSNREKILLEL---FNELPDSEA----DELLKTLEEKKRYY 119 Query: 134 RTIEEECMVEQ 144 + EE ++ Sbjct: 120 NQLLEELSQKK 130 >gi|255103226|ref|ZP_05332203.1| hypothetical protein CdifQCD-6_20608 [Clostridium difficile QCD-63q42] Length = 149 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 10/136 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R+ G+ Q +L E L ++ + YE A + ++E + Sbjct: 3 GERLKKLRIKFGLKQHELAEILNVSQSTIGMYENDQRTPPAESIVKLAEYFNVTTDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII----------ELVRS 125 + T S ++ + I ++ K + E+++ Sbjct: 63 HTKTNYSVSANIPGMPSIICEDTSIYDIVDEKKDIKSLEDINKFLENNNYNDEVKEVLKK 122 Query: 126 IVSSEKKYRTIEEECM 141 + ++ R E + Sbjct: 123 YMQLDEMDRKAIERMI 138 >gi|312126603|ref|YP_003991477.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776622|gb|ADQ06108.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 119 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 48/116 (41%), Gaps = 7/116 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R+ G+SQE+LG+ L ++ + + YE G L +++ I + Sbjct: 3 NRIRELRLERGLSQEELGKVLNVSGRTIGHYENGSREPTPEALNKLADFFGVTIDYLLCR 62 Query: 77 SPTVCSDISSEENNVMDFI------STPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + ++ ++ + ++ D +L + + + + + ++ + + Sbjct: 63 TDVRSTEKQDTKDKLQTPADVNKEPASDDIKELLLLAQNLQEEDL-KLLKQIAKRL 117 >gi|253579257|ref|ZP_04856527.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849355|gb|EES77315.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 177 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 39/80 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VGK+IR R G SQ +L E GI ++KYE G+ +L+ I+ L +S F Sbjct: 1 MVGKKIRAFREFRGYSQIQLAELSGINVGTIRKYELGIRNPKPDQLEKIATALGLNVSVF 60 Query: 74 FDVSPTVCSDISSEENNVMD 93 D + D+ S ++ D Sbjct: 61 LDFNIETVGDVLSLLFSIDD 80 >gi|226324586|ref|ZP_03800104.1| hypothetical protein COPCOM_02370 [Coprococcus comes ATCC 27758] gi|225207034|gb|EEG89388.1| hypothetical protein COPCOM_02370 [Coprococcus comes ATCC 27758] Length = 179 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 39/90 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+++R R+ ++QE+L + ++ + + E+ + + L I + L + ++ Sbjct: 1 MNIGQKVRELRIAKNLTQEELADRSELSKGFISQLERDLTSPSIATLVDILQCLGTNLNE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 FF E+ + ++ Sbjct: 61 FFSDDEEEQVVFGDEDYFEKKDTDLKNTIE 90 >gi|91217921|ref|ZP_01254874.1| hypothetical protein P700755_01267 [Psychroflexus torquis ATCC 700755] gi|91183898|gb|EAS70288.1| hypothetical protein P700755_01267 [Psychroflexus torquis ATCC 700755] Length = 247 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 24/62 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK I+ R I G+SQ+ E + + YE+G + + ++ I F Sbjct: 5 GKNIKKIRAIKGLSQQAFAELFSLKRATLGAYEEGRSEPKIDTIIKVANYFSISIDDFLT 64 Query: 76 VS 77 Sbjct: 65 KE 66 >gi|326941347|gb|AEA17243.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 262 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSDISS 86 + ++ + Sbjct: 64 ETAEQSNEKEN 74 >gi|325662713|ref|ZP_08151310.1| hypothetical protein HMPREF0490_02050 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471052|gb|EGC74279.1| hypothetical protein HMPREF0490_02050 [Lachnospiraceae bacterium 4_1_37FAA] Length = 180 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 42/90 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++I+ R I G+SQE LG GI ++KYE G+ +L I+ L I+ Sbjct: 1 MTVGEKIKYYRNIRGISQEMLGNLSGINPATIKKYEYGIRNPKPDQLLKITNALGISINL 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 F D SD+ S + + + + Sbjct: 61 FMDFDIETVSDVLSLLFKLDEQVDMRFEAE 90 >gi|319945801|ref|ZP_08020052.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|322387055|ref|ZP_08060666.1| XRE family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|319748161|gb|EFW00404.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|321142042|gb|EFX37536.1| XRE family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 148 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 43/119 (36%), Gaps = 9/119 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +R++ R ++Q ++ E +G+ ++E G G + ++ + + Sbjct: 5 DYKFSERLKTLRKSKKLTQVQISELIGVQQGTYSRWENGTLEPGLEFVVKLANIFGTTTD 64 Query: 72 FFFDVSPTVCSDISSEEN---------NVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + P E + +F + ++ +I +++ ++IE Sbjct: 65 YLLGQKPYSIISSLPLEQLDLTNIANFSKDEFDILKHSIAVSVARNKIKATELKDRVIE 123 >gi|300172531|ref|YP_003771696.1| XRE family transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299886909|emb|CBL90877.1| Transcriptional regulator, helix-turn-helix XRE-family [Leuconostoc gasicomitatum LMG 18811] Length = 132 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R L MSQE + + L ++ Q V ++E G + L ++E+ + + Sbjct: 7 NQLKKYRSDLNMSQEDVADKLFVSRQAVSRWESGDATPDLTNLIKLTEIFKCSLDSLVLG 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNR 105 S + E + +F P + R Sbjct: 67 IEETPSKSGTPEIDSSEFTFDPRRGEYVR 95 >gi|291543534|emb|CBL16643.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 201 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R GM+QE+L L ++ V K+E G L+ IS + Sbjct: 5 EKLQELRKQRGMTQEELATALYVSRTAVSKWESGRGYPSIDSLKAISGFFGVSLDQLLSS 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|265766758|ref|ZP_06094587.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263253135|gb|EEZ24611.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301164348|emb|CBW23906.1| putative DNA-binding protein [Bacteroides fragilis 638R] Length = 152 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 3/142 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++ V+++ G IR R+ + Q+ L + +T V KYEK + + L Sbjct: 1 METEEEIQNVNVHHGHNIRRTRIEKNIKQDALAALVNMTQPNVSKYEK-MRVIEDEMLNR 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENN--VMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + L P+ + + S + N + S+ + KI Sbjct: 60 FARALNVPVEYLKTLEEDAPSVVFENITNNVHDNKDSSVPITGYKGQDATTNSFNPIDKI 119 Query: 120 IELVRSIVSSEKKYRTIEEECM 141 EL ++ + + E+ + Sbjct: 120 TELYERLLEEKDEKYAALEKRI 141 >gi|168209895|ref|ZP_02635520.1| helix-turn-helix domain protein [Clostridium perfringens B str. ATCC 3626] gi|170711951|gb|EDT24133.1| helix-turn-helix domain protein [Clostridium perfringens B str. ATCC 3626] Length = 268 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 39/78 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++++L R G+SQE L E LGI+ Q V K+E G + ++L +SE+ I + Sbjct: 1 MKLAEKLQLIRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDY 60 Query: 73 FFDVSPTVCSDISSEENN 90 + E +N Sbjct: 61 LVKETYEFEGSQEKEISN 78 >gi|331086629|ref|ZP_08335706.1| hypothetical protein HMPREF0987_02009 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409795|gb|EGG89230.1| hypothetical protein HMPREF0987_02009 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 193 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 37/80 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R+ G++Q++L E L ++ + + K+E S ++ +++ L ++ F Sbjct: 6 GNTIRTLRIKHGITQKELAEKLNVSDKTISKWETEKGLPDISIVEELAKALHVSLTELFT 65 Query: 76 VSPTVCSDISSEENNVMDFI 95 ++S + ++ Sbjct: 66 GDLKTNENVSGNIKRIQFYV 85 >gi|323694108|ref|ZP_08108287.1| transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323501825|gb|EGB17708.1| transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 177 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 36/68 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +++ R + G++QE+L + ++ + + E+ + + L I + L + I Sbjct: 1 MNIGAKLKELRTLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGE 60 Query: 73 FFDVSPTV 80 FF+ +P Sbjct: 61 FFNETPEE 68 >gi|323485345|ref|ZP_08090694.1| hypothetical protein HMPREF9474_02445 [Clostridium symbiosum WAL-14163] gi|323401381|gb|EGA93730.1| hypothetical protein HMPREF9474_02445 [Clostridium symbiosum WAL-14163] Length = 177 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 36/68 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +++ R + G++QE+L + ++ + + E+ + + L I + L + I Sbjct: 1 MNIGAKLKELRTLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGE 60 Query: 73 FFDVSPTV 80 FF+ +P Sbjct: 61 FFNETPEE 68 >gi|312868590|ref|ZP_07728785.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311095887|gb|EFQ54136.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 238 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 26/67 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ RM +Q L + + +T + + +EKG + +++ +S+ + Sbjct: 23 NRIKELRMAQHKTQLDLAKKMNVTDRTISNWEKGKREPKIEAWKKMAQYFGVSVSYLQGL 82 Query: 77 SPTVCSD 83 Sbjct: 83 DDNKDGS 89 >gi|317047999|ref|YP_004115647.1| XRE family transcriptional regulator [Pantoea sp. At-9b] gi|316949616|gb|ADU69091.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 181 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 46/131 (35%), Gaps = 11/131 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ ++ R G S E G++ + + E+G + + L I+ P SFF Sbjct: 7 HLSLALKQLRQANGWSLTLAAERTGVSKAMLGQIERGESSPTVATLWKIATGFNVPFSFF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 S ++ + D ++R ++E+ ++ + Sbjct: 67 IQGSELPPGAAATFSQTNAQMQAKSLLPY---------DAQLRFDLLEV--TLAPGAQSD 115 Query: 134 RTIEEECMVEQ 144 + E ++EQ Sbjct: 116 SSPHEHGVIEQ 126 >gi|256847452|ref|ZP_05552898.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] gi|256716116|gb|EEU31091.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN] Length = 110 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 10/112 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I R MSQ L + + + Q + K+E G + +S + I+ + Sbjct: 1 MIGDKIHELRTQKRMSQTDLAKAIHASQQAITKWENGKSEPSSSVINSIANYFNVSTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + D +N + S + R IIE+V++ Sbjct: 61 LGRTSEKLPDKDLSKNQKLIAYSIDPD----------TSDEERDAIIEMVQA 102 >gi|218677789|ref|ZP_03525686.1| transcriptional regulator, XRE family protein [Rhizobium etli CIAT 894] Length = 182 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 34/84 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + + + Sbjct: 1 MSVDIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF P +++ Sbjct: 61 AEFFAFEPERPRKAFYAAEELVEI 84 >gi|209546895|ref|YP_002278813.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538139|gb|ACI58073.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 182 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 34/84 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + + + Sbjct: 1 MSVDIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF P +++ Sbjct: 61 AEFFAFEPERPRKAFYAAEELVEI 84 >gi|149920973|ref|ZP_01909434.1| transcriptional regulator, XRE family with cupin sensor [Plesiocystis pacifica SIR-1] gi|149818245|gb|EDM77700.1| transcriptional regulator, XRE family with cupin sensor [Plesiocystis pacifica SIR-1] Length = 199 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 34/80 (42%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++GK IR RR LG+S + L + G++ + + E+ I+ L Sbjct: 2 HDPSSSIGKNIRSRRQALGLSLDALAQASGVSSTMLSEVERARKNPTVKLAYQIARALGC 61 Query: 69 PISFFFDVSPTVCSDISSEE 88 ++ + SP V I + Sbjct: 62 SLTDLLEDSPAVEVSIVRAD 81 >gi|147677060|ref|YP_001211275.1| hypothetical protein PTH_0725 [Pelotomaculum thermopropionicum SI] gi|146273157|dbj|BAF58906.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 355 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+R+RL R G+S +L +G++ Q + KYE+G++ + L ++E L + +F Sbjct: 1 MVGERLRLARRAAGLSLRELANRVGVSPQAISKYERGLDIPSSGVLLRLAEALGVNVEYF 60 Query: 74 F 74 F Sbjct: 61 F 61 >gi|49476087|ref|YP_034128.1| transcriptional regulator [Bartonella henselae str. Houston-1] gi|49238895|emb|CAF28188.1| Transcriptional regulator [Bartonella henselae str. Houston-1] Length = 108 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 4/65 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI VGK+IR RR +L MSQ+ L + L ++ QQ+QKYE G+NRV A RL+ I++ +++ Sbjct: 15 DIFVGKKIRFRRKMLKMSQKTLADHLRVSSQQIQKYETGLNRVSAGRLKEIADRVKT--- 71 Query: 72 FFFDV 76 FFD Sbjct: 72 -FFDD 75 >gi|293414681|ref|ZP_06657330.1| transcriptional repressor DicA [Escherichia coli B185] gi|291434739|gb|EFF07712.1| transcriptional repressor DicA [Escherichia coli B185] Length = 135 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ RR L +SQ LG+ + + + ++E+ + RL +S+ L+ ++ Sbjct: 7 GARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQPAGKRLFALSQALQCSPTWLLF 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 N + T + +L + F + + + + ++ E + + + + Sbjct: 67 GDEDKQPGEPIPANQPTNL--TEEQKELLQLFDALPESEQKAQLSE----MRARVENFNK 120 Query: 136 IEEECMV 142 + EE + Sbjct: 121 LFEELLK 127 >gi|257065249|ref|YP_003144921.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792902|gb|ACV23572.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 194 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK I+ R GMSQE+L + + ++ Q V +E + L I+E+ + I Sbjct: 1 MEVGKTIKDLRTRSGMSQEELAKNVFVSRQTVSSWENEKSYPDVQSLALIAELFNTSIDA 60 Query: 73 FFDVSPTVCSDISSEEN 89 + +E Sbjct: 61 LVKGDLAMIDLRIAEAE 77 >gi|229068689|ref|ZP_04201987.1| hypothetical protein bcere0025_9000 [Bacillus cereus F65185] gi|228714436|gb|EEL66313.1| hypothetical protein bcere0025_9000 [Bacillus cereus F65185] Length = 149 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|255306539|ref|ZP_05350710.1| putative phage repressor [Clostridium difficile ATCC 43255] Length = 187 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 48/126 (38%), Gaps = 3/126 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G+ Q+++ L IT YE+G L ++E + + + Sbjct: 7 RLKFLRKEKGVMQKEIANYLNITTSAYGFYEQGKRTPTPEMLSSLAEYFGTTVDYLI-GR 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 + S + + + + +L R + V K + L +S ++ +T+ Sbjct: 66 YDNKASNISSKTSCNNTLFQKRLKEL-RAEKNMTQEDVANK-LNLTKSAYGYYEQGKTVP 123 Query: 138 EECMVE 143 + M+ Sbjct: 124 DAYMLS 129 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R M+QE + L +T YE+G A L ++E+ + Sbjct: 86 KRLKELRAEKNMTQEDVANKLNLTKSAYGYYEQGKTVPDAYMLSSLAEIFNVTTDYLLGR 145 Query: 77 S 77 S Sbjct: 146 S 146 >gi|194467418|ref|ZP_03073405.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454454|gb|EDX43351.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 185 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I RR LG++Q+ + L IT Q + K+E + L +SE+ + Sbjct: 4 GEQILSRRKELGLTQQNVANELHITRQTLSKWENNKSYPDLKLLLALSEIYHVSVDSLLR 63 Query: 76 VSPTVCSDISSEENNV 91 + + S ++ ++ + Sbjct: 64 ENKDLTSFLNRDKASQ 79 >gi|312864338|ref|ZP_07724571.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311100059|gb|EFQ58270.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 291 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R LG SQEKL E L ++ Q + K+E G S LQ I+++ + + S Sbjct: 7 LRHYRKELGFSQEKLAEKLHVSRQAITKWETGGGLPDISNLQAIAQLFQISLDDLLAESA 66 Query: 79 TVCSDISSEENNVMDF-ISTPDGLQLNRYFIQ 109 + + + I P LN Q Sbjct: 67 SPIEPKDFLYQSYTSYDIDRPKHFDLNLASSQ 98 >gi|288904450|ref|YP_003429671.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|306830483|ref|ZP_07463653.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977446|ref|YP_004287162.1| hypothetical protein SGGBAA2069_c02460 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731175|emb|CBI12723.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] gi|304427508|gb|EFM30610.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177374|emb|CBZ47418.1| conserved hypothetical protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 208 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 28/81 (34%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I R +SQ++ ++ Q V +E G + L IS+ + Sbjct: 2 NINELRKKNNLSQDEFANLFHVSRQTVSSWENGKSYPDVEMLIKISQHFGISVDDLVKNE 61 Query: 78 PTVCSDISSEENNVMDFISTP 98 + + + + + I+ P Sbjct: 62 MHLPTSNKPKTKSRLWLIALP 82 >gi|254284170|ref|ZP_04959138.1| transcriptional regulator, XRE family with cupin sensor domain [gamma proteobacterium NOR51-B] gi|219680373|gb|EED36722.1| transcriptional regulator, XRE family with cupin sensor domain [gamma proteobacterium NOR51-B] Length = 211 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 44/120 (36%), Gaps = 10/120 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++ +P + +G+R+ R G + ++L G++ + + E+G + Sbjct: 20 MSNSEPAIDPAALRLGQRVVEMRQNNGQTLDQLASASGVSRSMLSQIERGKANPTLAVTY 79 Query: 61 HISEVLESPISFFFDV----------SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 I++ I D + ++ ++ +P ++ N F ++ Sbjct: 80 RIAQSFGLSIGEMVDDPSLGSPIEVVHGSDPGNLFRDDEECRIRTLSPLHMEKNVEFYEL 139 >gi|147677406|ref|YP_001211621.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146273503|dbj|BAF59252.1| hypothetical transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 255 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 1/116 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R G++Q +L G+T + + E+G + L+ I+EV+ +F Sbjct: 139 LGCKLRALREEYGLTQAQLASMAGVTAGLIGQIEQGKVQPSLKTLEKIAEVMGVTPCYFI 198 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S V +S V D + P+ + + + K Q I+ ++ SE Sbjct: 199 MESGAVDQMLSVMNPEVRDLLMHPNVQSVLGLVSNL-NEKELQFILNFIKLFKKSE 253 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 31/91 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++IR R G + + L ++ + + E+G R + ++ L + Sbjct: 5 GEQIRALREERGYTLQDLARRTNLSLSYLSEIERGSKRPSLKTIDKLAAALNVAKAQLIK 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 T ++ ++ +L + Sbjct: 65 GDVTDSGLSLGDKIRMLRAEKNMSLQELAQA 95 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +IR+ R MS ++L + GI+ + + E+G + L+ I+ L P + Sbjct: 74 LGDKIRMLRAEKNMSLQELAQASGISLSYLSEIERGTVYPALTTLKRIAAGLSVPPAAL 132 >gi|108797614|ref|YP_637811.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119866701|ref|YP_936653.1| hypothetical protein Mkms_0647 [Mycobacterium sp. KMS] gi|108768033|gb|ABG06755.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119692790|gb|ABL89863.1| protein of unknown function DUF955 [Mycobacterium sp. KMS] Length = 475 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 9/127 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRNERGYSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E + D ++ L R++V+ ++Y Sbjct: 65 ASQDDTRLVAELREVAMDRELGVEVDVSEIADMVAAHPT---------LARAMVNLHRRY 115 Query: 134 RTIEEEC 140 R + Sbjct: 116 RLTTTQL 122 >gi|291548443|emb|CBL21551.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 345 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 39/90 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G I+ R G +QE++ LG+T V K+E G + L I+ +L + Sbjct: 1 MNIGNVIKKYRKESGFTQEEMANRLGVTTPAVNKWETGNSNPDIELLAPIARLLHISLDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + +E MD + + +G + Sbjct: 61 LLSFHENLTDVEITELIQEMDKMFSAEGYE 90 >gi|251782746|ref|YP_002997049.1| hypothetical protein SDEG_1340 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391376|dbj|BAH81835.1| hypothetical protein SDEG_1340 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 257 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E +G T Q + K+E +L +S V E + + Sbjct: 4 GEKLFKLRKEKGISQENLAEQIGTTRQAISKWENNQGFPEVEKLLQLSNVFEVSVDYLLK 63 Query: 76 VSPT 79 T Sbjct: 64 DDKT 67 >gi|50122325|ref|YP_051492.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|49612851|emb|CAG76301.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] Length = 136 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 10/118 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRI R GM+Q ++ + L ++ Q VQ +E G R+ S L ++ VL + Sbjct: 28 ELGKRITALRKEAGMTQTQVAQALNVSQQAVQAWEAGRRRIQISILPAVARVLSVSLEDL 87 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + TP QL + K ++ I E++ ++++ + Sbjct: 88 LGEEAEKAARKRGP---------TPKWQQLIEEIDSLPKAK-QKMISEMLSALIAQAR 135 >gi|288561750|ref|YP_003429156.1| transcriptional regulator XRE [Bacillus pseudofirmus OF4] gi|288548382|gb|ADC52264.1| transcriptional regulator, XRE [Bacillus pseudofirmus OF4] Length = 292 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 7/116 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ R G+SQ +L + + T + EKG N V A L I+E L I++FF Sbjct: 6 IGKNIKDLREYYGISQRELAKGI-CTQPTISNIEKGENFVAAQLLHMIAERLGVDINYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 +++ T D +E + + I + L R++ S + Sbjct: 65 NIAETPKIDYMNETFYYIRLYVRQGKFTEAKKLISSEKNNP------LFRALSSQQ 114 >gi|229065703|ref|ZP_04200928.1| hypothetical protein bcere0026_57030 [Bacillus cereus AH603] gi|228715566|gb|EEL67366.1| hypothetical protein bcere0026_57030 [Bacillus cereus AH603] Length = 108 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 28/83 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+ R G +Q + L I +E G A + I+++ I F Sbjct: 6 KRLAELRKKQGYTQFDVAYRLNIARTTYANWEYGKTDPDADSIMSIADLYNVSIDELFGR 65 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 + + S + S + D Sbjct: 66 NAPLESKLESIKVAASDLSPQKQ 88 >gi|218660254|ref|ZP_03516184.1| hypothetical protein RetlI_11854 [Rhizobium etli IE4771] Length = 280 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 37/110 (33%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R+ + +L G++ + K E+G L I+ V + F Sbjct: 100 AIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFGVGLDHF 159 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F + + S P + +F +D +++ Sbjct: 160 FKADKEEPLIAVVRKEQRLKLPSPPGEKRPAFFFESLDYPAADRRMEAFY 209 >gi|126433238|ref|YP_001068929.1| hypothetical protein Mjls_0627 [Mycobacterium sp. JLS] gi|126233038|gb|ABN96438.1| protein of unknown function DUF955 [Mycobacterium sp. JLS] Length = 475 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 9/127 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 FVGSRVRQLRNERGYSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T E + D ++ L R++V+ ++Y Sbjct: 65 ASQDDTRLVAELREVTMDRELGVEVDVSEIADMVAAHPT---------LARAMVNLHRRY 115 Query: 134 RTIEEEC 140 R + Sbjct: 116 RLTTTQL 122 >gi|70729458|ref|YP_259196.1| Cro/CI family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68343757|gb|AAY91363.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens Pf-5] Length = 106 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 12/113 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ +R LG+SQ++ G G+ +YE G + L I + + Sbjct: 5 GERLKEQRKALGLSQQEFGAIGGVEANAQGRYESGERVPKSDYLMAIGR-HGVDLLYVLT 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + S+ S + + + + + D ++ I +L S+ Sbjct: 64 GERSRLSEGSLSLDEST----------IIQNYRHLGDED-QEAIAQLASSLAE 105 >gi|297153462|gb|ADI03174.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 204 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 6/114 (5%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + V VG R+R R G++ L G++ + + E G R L ++ + Sbjct: 7 KTDDDVLDAVGPRLRALRRDRGITLADLAATTGVSESTLSRLESGQRRPSLELLLPLARI 66 Query: 66 LESPISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 P+ P + +S G F I + Sbjct: 67 YGVPLDDLVGAPRTGDPRIHLKPIRRYGMTFVPLSRRPGG--VHAFKMIIPARP 118 >gi|229157204|ref|ZP_04285284.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 4342] gi|228626268|gb|EEK83015.1| Helix-turn-helix domain protein [Bacillus cereus ATCC 4342] Length = 262 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSDISS 86 + ++ + Sbjct: 64 ENAEQSNEKEN 74 >gi|217961038|ref|YP_002339606.1| helix-turn-helix domain protein [Bacillus cereus AH187] gi|222097090|ref|YP_002531147.1| helix-turn-helix domain protein [Bacillus cereus Q1] gi|217067952|gb|ACJ82202.1| helix-turn-helix domain protein [Bacillus cereus AH187] gi|221241148|gb|ACM13858.1| helix-turn-helix domain protein [Bacillus cereus Q1] Length = 262 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSDISS 86 + ++ + Sbjct: 64 ENAEQSNEKEN 74 >gi|153854167|ref|ZP_01995475.1| hypothetical protein DORLON_01466 [Dorea longicatena DSM 13814] gi|149753216|gb|EDM63147.1| hypothetical protein DORLON_01466 [Dorea longicatena DSM 13814] Length = 119 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/119 (10%), Positives = 46/119 (38%), Gaps = 8/119 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R +Q+ + + L + + YE + +L ++E+ + + D Sbjct: 5 EKLKKLREENHYTQKYVAKHLNVARSTIAGYETKNRQPSHEKLTILAELFHVSVDYLLDD 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 SE + L +F ++ + +++++ ++ + ++ R+ Sbjct: 65 D-------ISEITLSDKSTAQKSEHYLLTHFHRLSNSS-KKELLNFLQYLEQRDESARS 115 >gi|317501992|ref|ZP_07960176.1| hypothetical protein HMPREF1026_02120 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896672|gb|EFV18759.1| hypothetical protein HMPREF1026_02120 [Lachnospiraceae bacterium 8_1_57FAA] Length = 102 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 33/81 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I R G+SQ+ ++ Q + +E G + + +S+ + I Sbjct: 1 MNIGEQINNLRKQHGLSQDDFANLFNVSRQTISNWENGKSYPDLEMIIKVSDYFKISIDE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 I +E+ + + Sbjct: 61 LLKNDVQTVKKIDNEKKDKKE 81 >gi|312868402|ref|ZP_07728602.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096147|gb|EFQ54391.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 228 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 55/128 (42%), Gaps = 27/128 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L M+Q+ + + LGIT+Q +E+GV + ++Q + ++L P +F + Sbjct: 5 EKLKARRKELKMTQKDIADQLGITYQAYSAWERGVKQPSREKVQQLEQILNVPKGYFTE- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK-KYRT 135 L++ R + + D + + + VR + EK K Sbjct: 64 ------------------------LEIARLYNILSDEA-KDQALSYVRGLAQKEKCKNVV 98 Query: 136 IEEECMVE 143 E + E Sbjct: 99 PISEKLYE 106 >gi|325679912|ref|ZP_08159481.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108350|gb|EGC02597.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 135 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 5/119 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G ++ R G SQE L + L ++ Q V K+E G + A ++ IS F Sbjct: 1 MNIGDKLLFLRNRSGCSQENLADALDVSRQTVSKWELGQSLPDAEKIVAISNFFSVTTDF 60 Query: 73 FFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYFI-QIDDVKVRQKIIELVRSI 126 + D E L I D + R ++ E+V+++ Sbjct: 61 LLRDTSPVKIEKNLDRIVIEFANSASDLDKISKDLVDIARDGIIDEEERLRLFEMVKTV 119 >gi|229042877|ref|ZP_04190612.1| hypothetical protein bcere0027_9360 [Bacillus cereus AH676] gi|228726479|gb|EEL77701.1| hypothetical protein bcere0027_9360 [Bacillus cereus AH676] Length = 149 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + I + + Sbjct: 65 DEELTQKIIEDSKRLAYP 82 >gi|229114588|ref|ZP_04244002.1| hypothetical protein bcere0017_8850 [Bacillus cereus Rock1-3] gi|228668653|gb|EEL24081.1| hypothetical protein bcere0017_8850 [Bacillus cereus Rock1-3] Length = 149 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|126650067|ref|ZP_01722300.1| transcriptional regulator (phage-related) protein [Bacillus sp. B14905] gi|126593239|gb|EAZ87201.1| transcriptional regulator (phage-related) protein [Bacillus sp. B14905] Length = 118 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 49/112 (43%), Gaps = 3/112 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +R++ R ++Q + + L I+ YE+G N + +Q ++E + +++ Sbjct: 4 VSQRLKDLRKEAKLTQADVAKFLNISESAYGYYEQGRNEISIGSVQKLAEKYDVSVAYIL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK--IIELVR 124 + + EE F + P+ + + D+ VR+ I E+++ Sbjct: 64 CETDEK-QPLDKEEAAFQAFANDPELQVFYKELPKSDEETVRRLRDIWEIIK 114 >gi|115525178|ref|YP_782089.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115519125|gb|ABJ07109.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisA53] Length = 472 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 39/127 (30%), Gaps = 2/127 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R ++Q L LGI+ + + E + ++ I F Sbjct: 5 FLGVRLKRLREQQRLTQAALAAKLGISLSYLNQLENNQRPLTLPVALALNATFGLDIQSF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D E + T L ++ + + ++ L + + ++ Sbjct: 65 SDDDEARLIADLREAVADPALVETIATADLREL--ALNMPAIGRTLVALSQRYRQAIEQS 122 Query: 134 RTIEEEC 140 + Sbjct: 123 AALSARL 129 >gi|47567915|ref|ZP_00238622.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] gi|47555393|gb|EAL13737.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] Length = 262 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSDISS 86 + ++ Sbjct: 64 ETAEKSNENVD 74 >gi|306828752|ref|ZP_07461944.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304428930|gb|EFM32018.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] Length = 165 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + S + D Sbjct: 61 LLLDENSEKSSTAVILEEDKD 81 >gi|227823807|ref|YP_002827780.1| transcriptional regulator, XRE family with cupin sensor [Sinorhizobium fredii NGR234] gi|227342809|gb|ACP27027.1| transcriptional regulator, XRE family with cupin sensor [Sinorhizobium fredii NGR234] Length = 220 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 36/85 (42%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +++G R+R R++ +SQ +L + G+T + E + L+ I + + Sbjct: 38 AMSVDIGNRLRHVRLMHNLSQRELAKRAGVTNSTISLIESNASNPSVGALKRILDGIPIG 97 Query: 70 ISFFFDVSPTVCSDISSEENNVMDF 94 ++ FF P +++ Sbjct: 98 LAEFFSFEPERPRKAFYAAEELVEI 122 >gi|206976191|ref|ZP_03237100.1| helix-turn-helix domain protein [Bacillus cereus H3081.97] gi|206745645|gb|EDZ57043.1| helix-turn-helix domain protein [Bacillus cereus H3081.97] Length = 262 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKEKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSDISS 86 + ++ + Sbjct: 64 ENAEQSNEKEN 74 >gi|166032287|ref|ZP_02235116.1| hypothetical protein DORFOR_01990 [Dorea formicigenerans ATCC 27755] gi|166028010|gb|EDR46767.1| hypothetical protein DORFOR_01990 [Dorea formicigenerans ATCC 27755] Length = 351 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 36/70 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G++QE++ + L ++ V K+EKG S L I+ +L+ ++ Sbjct: 1 MQIGEKIKNYRKTAGLTQEQVADYLDVSTPAVNKWEKGNTYPDISLLPAIARLLKIDMNE 60 Query: 73 FFDVSPTVCS 82 F + Sbjct: 61 LFSFREELTE 70 >gi|154500025|ref|ZP_02038063.1| hypothetical protein BACCAP_03683 [Bacteroides capillosus ATCC 29799] gi|150271623|gb|EDM98880.1| hypothetical protein BACCAP_03683 [Bacteroides capillosus ATCC 29799] Length = 171 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 1/88 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R + G+SQE+L E L ++ Q + K+E G + IS + + + + Sbjct: 5 EKLQRLRKVNGLSQEQLAEKLNVSRQAISKWEMGAI-PDMDNVIKISRFFDCSLDYLMNN 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN 104 S + Sbjct: 64 EAEETSIKPFPSQAAPQKTAKKKNHFHI 91 >gi|322433293|ref|YP_004210514.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321165685|gb|ADW71387.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 114 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 1/83 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR R G + GI Q +KYE+G + A + I+ + +S Sbjct: 10 KALGERIRKFRKERGWKHSDIIANSGINDSQWRKYERGSG-ITAESMLKIAACFKMSVSD 68 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 + + Sbjct: 69 LLRGLGDGPIATPGSAPEAVFPV 91 >gi|257867716|ref|ZP_05647369.1| predicted protein [Enterococcus casseliflavus EC30] gi|257874043|ref|ZP_05653696.1| predicted protein [Enterococcus casseliflavus EC10] gi|257801799|gb|EEV30702.1| predicted protein [Enterococcus casseliflavus EC30] gi|257808207|gb|EEV37029.1| predicted protein [Enterococcus casseliflavus EC10] Length = 200 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 34/75 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ RR LGM+QE+L + L ++ + +E G N + L ++++ + + F Sbjct: 7 IKERRKQLGMTQEELAKELNVSRSAISNWEIGRNYPDITTLIELAQMYQVSLDELFYDDI 66 Query: 79 TVCSDISSEENNVMD 93 + + + + Sbjct: 67 DLVNKFAEDNKKKEQ 81 >gi|126730936|ref|ZP_01746745.1| DNA-binding protein, putative [Sagittula stellata E-37] gi|126708652|gb|EBA07709.1| DNA-binding protein, putative [Sagittula stellata E-37] Length = 130 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 11/125 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+ R GMSQE L + LGI ++++E ++ A++L ++ +L + + Sbjct: 14 LGDRLAAAREAQGMSQETLAKNLGIKLTTLERWEDDLSEPRANKLSMVAGILNVSMVWLI 73 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + DF ++ + R +I + EK+ R Sbjct: 74 TGEGEGVGNPEEDTTMGADFT------EILAEMRAL-----RVQIKARTDKLGQLEKRLR 122 Query: 135 TIEEE 139 +E Sbjct: 123 QALKE 127 >gi|288956863|ref|YP_003447204.1| transcriptional regulator [Azospirillum sp. B510] gi|288909171|dbj|BAI70660.1| transcriptional regulator [Azospirillum sp. B510] Length = 221 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 2/90 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N N +D + R+R R G++ + L E G++ + E+G + AS L Sbjct: 21 MEN--AANDIDSRLATRLRALRADRGLTLDSLSERSGVSRSMISLVERGESSPTASVLDR 78 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNV 91 ++ L ++ F + + + +++ Sbjct: 79 LAAGLGVTLATLFAEAERRDASPVARQSDQ 108 >gi|108803433|ref|YP_643370.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764676|gb|ABG03558.1| transcriptional regulator, XRE family [Rubrobacter xylanophilus DSM 9941] Length = 134 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 49/129 (37%), Gaps = 5/129 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R +G SQ +L G+ + E G S ++ +++ L P++ + Sbjct: 2 GPKLRQLRRQMGWSQHELARRSGVDRATISAIESGKRDPSGSTMRKLADALGVPVAELYK 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK--VRQKIIELVRS---IVSSE 130 + I ++ + P+ +++ + +R + L+ + + E Sbjct: 62 EPLEQLTAIYERTDDGWWIVEVPEIPGAVSQGRTLEEARFMIRDAVRLLLEARRELAEQE 121 Query: 131 KKYRTIEEE 139 + + E Sbjct: 122 HEGHEVIRE 130 >gi|332983435|ref|YP_004464876.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332701113|gb|AEE98054.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 127 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 7/122 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R +SQ +L LG+T Q + YE G+ + I+ I + Sbjct: 2 NRIKELREEAKISQAELASILGVTQQALSNYENGLREPDLDTINKIANYFGVSIDYLLCR 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRY-----FIQIDD--VKVRQKIIELVRSIVSS 129 + SD+ E + + NR F +I D ++I++++ + Sbjct: 62 TNVRNSDVIEEAIKDDPELERIWNMLNNREEVRLMFKKIADLKPADVKRILKIIEIVEEE 121 Query: 130 EK 131 + Sbjct: 122 DS 123 >gi|322688843|ref|YP_004208577.1| hypothetical protein BLIF_0656 [Bifidobacterium longum subsp. infantis 157F] gi|320460179|dbj|BAJ70799.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 161 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 36/81 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ I++ R G++Q + L +T Q + ++EKG ++ IS E P++ Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 ++ + + Sbjct: 61 LMEMPDNGFCQSCAMPFYCPE 81 >gi|300811797|ref|ZP_07092268.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497213|gb|EFK32264.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 136 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 40/98 (40%), Gaps = 4/98 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++R R G+SQ++L E L T +V +E G + S + ++ + + + Sbjct: 1 MMLPSKLRDLRKKNGLSQKELAEKLMTTQAKVASWENGDSVPNISYIAKLAVLYDVSADY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + E MD +T ++N + I Sbjct: 61 LLKDDKQEGHEPGEE----MDRPNTKRLGRINSIYWTI 94 >gi|295100881|emb|CBK98426.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 168 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 47/127 (37%), Gaps = 20/127 (15%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ +PN I +GK+I+ R + M+QE+L ++ + + E G L Sbjct: 49 MM----MPNADAIALGKQIKAVRKAMKMTQEQLALKSNVSVKYIANIENGKQNPSFDILS 104 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I VL + N + + +L + ++R+ ++ Sbjct: 105 SILHVLPLSLD---------------SVINPNLSEAERECRELESIYFACP-PEMRKTLL 148 Query: 121 ELVRSIV 127 + RS+ Sbjct: 149 DATRSLA 155 >gi|293402557|ref|ZP_06646692.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304071|gb|EFE45325.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 173 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 9/104 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE+L L + Q + K+E G++ + L ISE+ E+P+S Sbjct: 4 ENIKAIRKAKGLSQEELAIKLNVVRQTISKWENGLSVPDSDMLISISEIFETPVSALL-- 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I +E + + I+ + + + ++R+KI+ Sbjct: 62 ----GESIIEQEADDVKVIAEKLEVINLQLAKR---KEIRRKIL 98 >gi|257871225|ref|ZP_05650878.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805389|gb|EEV34211.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 346 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 1/101 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR R G++QE+L + LG+T V K+EKG + L I+ +L+ + Sbjct: 1 MEMGEVIRQYRKKKGLTQEELAKRLGVTAPAVNKWEKGHSHPDILLLAPIARLLDISLDT 60 Query: 73 FFDVSPT-VCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 F ++I+ + + + R+ +I D Sbjct: 61 LFSFEKELTVTEINQIIRELDHKLKNQPFEDVFRWAKEILD 101 >gi|88706762|ref|ZP_01104463.1| DNA-binding protein [Congregibacter litoralis KT71] gi|88698943|gb|EAQ96061.1| DNA-binding protein [Congregibacter litoralis KT71] Length = 186 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 5/117 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +G+R+ R + M+ E+L G++ + + E+G + Q I++ Sbjct: 1 MTDSTSRLLGERVSQLRQLQSMTLEQLAAASGVSRSMLSQIERGKANPTLAVTQRIAQTF 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 I D S ++ +L + +K IE Sbjct: 61 GISIGELVDDPNASASIDVVRGDDPGTVFRADSECEL-----RTLSPLQLEKNIEFY 112 >gi|325662004|ref|ZP_08150623.1| hypothetical protein HMPREF0490_01361 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471667|gb|EGC74886.1| hypothetical protein HMPREF0490_01361 [Lachnospiraceae bacterium 4_1_37FAA] Length = 186 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 36/79 (45%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V +N+G ++R RM G++QE+L + ++ + + E+ + + L + + L + Sbjct: 5 SVYMNIGNKLRELRMEKGLTQEELADRAELSKGFISQIERDLTSPSIATLVDLLQCLGTN 64 Query: 70 ISFFFDVSPTVCSDISSEE 88 + FF E+ Sbjct: 65 LKDFFSDDSDEQIVFPKED 83 >gi|323485634|ref|ZP_08090973.1| transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323401045|gb|EGA93404.1| transcriptional regulator [Clostridium symbiosum WAL-14163] Length = 289 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 28/70 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R ++QE+ E + ++ Q V K+E G + +L I E + Sbjct: 5 ENLQYLRKKQNLTQEQFAEQMEVSRQAVSKWESGQSYPEMEKLLQICEQFGCSMDSLIKG 64 Query: 77 SPTVCSDISS 86 T + S Sbjct: 65 DVTEAAKEDS 74 >gi|253583791|ref|ZP_04860989.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] gi|251834363|gb|EES62926.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725] Length = 168 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DV 76 +I+ R GMSQEKL + LG++ Q V K+E G + ++ +S + E + DV Sbjct: 6 KIQQLRKQNGMSQEKLAQLLGVSKQSVSKWESGQSLPEIDKIIQLSNIFEVTTDYLLKDV 65 Query: 77 SPTVCSDISSEENN 90 S C DI +E Sbjct: 66 SEEKCIDILRKEKE 79 >gi|217077472|ref|YP_002335190.1| transcriptional regulator, XRE family [Thermosipho africanus TCF52B] gi|217037327|gb|ACJ75849.1| transcriptional regulator, XRE family [Thermosipho africanus TCF52B] Length = 177 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 52/127 (40%), Gaps = 2/127 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ G +QE+L + ++ + + E L+ I VL S + Sbjct: 1 MKLGKKIKTLRIARGYTQEELADRCDLSRSFISQLENDQVSPSIDTLERILRVLGSDLKT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF + V ++ G++ I+D + K+IEL +E++ Sbjct: 61 FFSTDKRQEKIVFKASERVPMYL-DEYGIKGYILMDNIEDKSIDPKLIELAPG-AETEEE 118 Query: 133 YRTIEEE 139 +E Sbjct: 119 DPHEGDE 125 >gi|328956484|ref|YP_004373870.1| conserved hypothetical protein; possible transcriptional regulator A [Carnobacterium sp. 17-4] gi|328672808|gb|AEB28854.1| conserved hypothetical protein; possible transcriptional regulator A [Carnobacterium sp. 17-4] Length = 172 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ RM SQ + + L I+ Q + K+E G + L +S + I Sbjct: 1 MVLGERLKQSRMNKRYSQGDVAKHLHISRQSISKWENGNSYPDLDNLAKLSTYYDVSIDE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + +I + + Sbjct: 61 LLKEDQKLKKEIEENKGETEN 81 >gi|326797649|ref|YP_004315468.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] gi|326548413|gb|ADZ76798.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] Length = 193 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 48/117 (41%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + I +G +I+ RR G++ ++L + ++ + + E L I + L Sbjct: 1 MKDDILIQIGNQIKERRKNKGITVQELADRASVSKGLISQIENNRVIPSLMVLIEIIKSL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + ++ FF ++ + ++ + ++ +I ++ +++V Sbjct: 61 DVDLNIFFKDIGVNKNNKTILIKKKDEYSHFEKEEAIGFHYHRIFTRNIKNSTVDIV 117 >gi|255067367|ref|ZP_05319222.1| HTH-type transcriptional regulator DicA [Neisseria sicca ATCC 29256] gi|255048337|gb|EET43801.1| HTH-type transcriptional regulator DicA [Neisseria sicca ATCC 29256] Length = 218 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 4/107 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ +G+RIR +R +Q++L + L I+ + ++E + A L +S+VL Sbjct: 1 MNKTIGQRIRQKRKEFKWTQQELAKKLKDISHVAISQWESNTTKPNAENLYELSQVLGCD 60 Query: 70 ISFFFDVSPTVCSDI---SSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + + + + NN + ++ I I + Sbjct: 61 LGWLLKGEGEDTNTNVVFIEDSNNRKIPVLDVAQIENWNLRIPIPNP 107 >gi|228926912|ref|ZP_04089978.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936979|ref|ZP_04099721.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822694|gb|EEM68584.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832647|gb|EEM78218.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 118 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 12/123 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R + QE+LG+ +G++ Q + KYEKG ++ +++ P+ + Sbjct: 4 IGERIFELRKEKKLVQEELGKYIGVSKQTISKYEKGTKIPSRENIEKLADFFSVPVDYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR----SIVSSE 130 S + ++ + + + + + L+ ++ E Sbjct: 64 GKSDSTNKSSNNIKEIFES--------DELHWDGRKLSPDEIESVKALLEVAISRMLKQE 115 Query: 131 KKY 133 KK Sbjct: 116 KKD 118 >gi|317054764|ref|YP_004103231.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447033|gb|ADU20597.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 198 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 28/79 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + K I+ R G SQE L E ++ Q + +E N L +S++ + Sbjct: 1 MELSKTIKRLRTEKGWSQETLAEKSYVSRQTISNWENEKNYPDVHSLLILSDLFGVSLDE 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + ++ Sbjct: 61 LIKGDVETMKNTIHNKDAY 79 >gi|226328632|ref|ZP_03804150.1| hypothetical protein PROPEN_02527 [Proteus penneri ATCC 35198] gi|225203365|gb|EEG85719.1| hypothetical protein PROPEN_02527 [Proteus penneri ATCC 35198] Length = 73 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 38/65 (58%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV +G++I R + G+S ++L +G++ QQ +YE+GVNR+ RL +E+ Sbjct: 6 PVSKAIGRKITYYRKMKGISLDELAALIGVSQQQQSRYERGVNRINLDRLNQYAEIFNIH 65 Query: 70 ISFFF 74 I FF Sbjct: 66 IKDFF 70 >gi|86361163|ref|YP_473050.1| MerR family transcriptional regulator [Rhizobium etli CFN 42] gi|86285265|gb|ABC94323.1| putative transcriptional regulator protein, MerR family [Rhizobium etli CFN 42] Length = 203 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 31/74 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + + + Sbjct: 22 MSVDIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGL 81 Query: 71 SFFFDVSPTVCSDI 84 + FF P Sbjct: 82 AEFFAFEPERPKKA 95 >gi|50196919|ref|YP_052614.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|165871721|ref|ZP_02216366.1| hypothetical protein BAC_1057 [Bacillus anthracis str. A0488] gi|167638961|ref|ZP_02397235.1| hypothetical protein BAQ_1085 [Bacillus anthracis str. A0193] gi|170707968|ref|ZP_02898417.1| hypothetical protein BAK_1115 [Bacillus anthracis str. A0389] gi|177653556|ref|ZP_02935730.1| hypothetical protein BAO_1046 [Bacillus anthracis str. A0174] gi|190566543|ref|ZP_03019460.1| hypothetical protein BATI_1082 [Bacillus anthracis Tsiankovskii-I] gi|229601932|ref|YP_002865577.1| hypothetical protein BAA_1117 [Bacillus anthracis str. A0248] gi|254734209|ref|ZP_05191922.1| hypothetical protein BantWNA_03453 [Bacillus anthracis str. Western North America USA6153] gi|254753484|ref|ZP_05205520.1| hypothetical protein BantV_13483 [Bacillus anthracis str. Vollum] gi|254758581|ref|ZP_05210608.1| hypothetical protein BantA9_09739 [Bacillus anthracis str. Australia 94] gi|50082981|gb|AAT70122.1| hypothetical protein GBAA_1022 [Bacillus anthracis str. 'Ames Ancestor'] gi|164712622|gb|EDR18154.1| hypothetical protein BAC_1057 [Bacillus anthracis str. A0488] gi|167513091|gb|EDR88463.1| hypothetical protein BAQ_1085 [Bacillus anthracis str. A0193] gi|170127128|gb|EDS96006.1| hypothetical protein BAK_1115 [Bacillus anthracis str. A0389] gi|172081360|gb|EDT66434.1| hypothetical protein BAO_1046 [Bacillus anthracis str. A0174] gi|190562095|gb|EDV16063.1| hypothetical protein BATI_1082 [Bacillus anthracis Tsiankovskii-I] gi|229266340|gb|ACQ47977.1| hypothetical protein BAA_1117 [Bacillus anthracis str. A0248] Length = 149 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|313898355|ref|ZP_07831892.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956737|gb|EFR38368.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 268 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 47/115 (40%), Gaps = 7/115 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +I R L +Q +L E LG++ + + K+E+GV S L + L +S Sbjct: 4 KEIGMQISAARKKLKYTQRELAEKLGVSDKTISKWERGVGYPDISLLLPLCRELGIEVSQ 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 T +E+N + ++ + ++++ I ++ ++ Sbjct: 64 LLGDEETDTQKQGNEKNL-------KNLADYAVLKVKENRERIQRWIWIMLSALA 111 >gi|83746380|ref|ZP_00943432.1| hypothetical protein RRSL_03974 [Ralstonia solanacearum UW551] gi|207744667|ref|YP_002261059.1| hypothetical protein RSIPO_02878 [Ralstonia solanacearum IPO1609] gi|83726921|gb|EAP74047.1| hypothetical protein RRSL_03974 [Ralstonia solanacearum UW551] gi|206596074|emb|CAQ63001.1| hypothetical protein RSIPO_02878 [Ralstonia solanacearum IPO1609] Length = 209 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 33/103 (32%), Gaps = 5/103 (4%) Query: 1 MVGNKKIPNP-----VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 M P+ V+ + +R+R R G + + L G++ + E+G Sbjct: 1 MQETTAPPSDDTDAGVNERIARRVRELRAARGYTLDALAARCGVSRSMISLIERGAASPT 60 Query: 56 ASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 A+ L ++ L ++ F S P Sbjct: 61 AAVLDKLAAGLGVSLASLFGGEREGVSAQPLMRRAQQTQWRDP 103 >gi|325262061|ref|ZP_08128799.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324033515|gb|EGB94792.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 95 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R M+Q L + L + + YE G L I++ E + Sbjct: 7 IGRNIRRLRKERNMTQLHLAKILHLHRATLCSYEIGKRLPDIFILISIADAFEVSLDILV 66 Query: 75 D 75 D Sbjct: 67 D 67 >gi|293400467|ref|ZP_06644612.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305493|gb|EFE46737.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 162 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 5/95 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K + + G RI+ R LG++Q K + + T + YEKG + Sbjct: 1 MNDSK-----IYKDFGNRIKEIRQSLGLTQVKFAKIINCTQATLSSYEKGSIIPSLETMI 55 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFI 95 IS+ + + + +S SD + M + Sbjct: 56 KISKECQISLDWLCGLSDVKDSDNIISFADTMRLL 90 >gi|218513526|ref|ZP_03510366.1| probable transcriptional regulator protein, LacI family [Rhizobium etli 8C-3] Length = 219 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 37/87 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + ++ +G RIR R+ G++ + L G++ + + E+ AS L I L Sbjct: 1 MEEQLEQAIGIRIRKLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMD 93 +S FF S ++ ++ + Sbjct: 61 GLSLSAFFAEEGQQASPLARRQDQQVW 87 >gi|60683798|ref|YP_209648.1| hypothetical protein pDx14.2p11 [Bacillus mycoides] gi|60416575|emb|CAI40627.1| hypothetical protein [Bacillus mycoides] Length = 240 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I+ R+I M+QE + L I+ Q + K+E G + + L +S + I Sbjct: 20 MDIGKKIKHLRLINNMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSIDS 79 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 + + I + N + Sbjct: 80 LLKEDSNLQNQIIKQSNYKRYLL 102 >gi|331085319|ref|ZP_08334405.1| hypothetical protein HMPREF0987_00708 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408102|gb|EGG87592.1| hypothetical protein HMPREF0987_00708 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 150 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 28/66 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + I+ R ++Q++L + L ++ Q V ++EKG + ++ L+ + Sbjct: 1 MALNDNIKKFREEKNLTQQQLADKLYVSRQTVCRWEKGSRCPDLITAKKLALELDVSVDE 60 Query: 73 FFDVSP 78 Sbjct: 61 LISDED 66 >gi|296114146|ref|ZP_06832801.1| hypothetical protein GXY_00139 [Gluconacetobacter hansenii ATCC 23769] gi|295979222|gb|EFG85945.1| hypothetical protein GXY_00139 [Gluconacetobacter hansenii ATCC 23769] Length = 188 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 10/110 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+L R G+SQ+ E LG++ V +E G + + + I+E+ Sbjct: 82 REIGQRIQLLRKAAGLSQKAFAEMLGMSRAAVCFWETGRSSHISEHVPRIAEIFGISEEV 141 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 F + + N + T D + + + + Q I + Sbjct: 142 FLNG----------QNNETIPIELTKDEENIIKLYRSLSIENRLQAIKRM 181 >gi|296128010|ref|YP_003635260.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296019825|gb|ADG73061.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 91 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 2/76 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 ++ P ++ RI + R G+S+ +L + LG+ +Q V E+G I Sbjct: 8 ERRRAPGADAVH--NRISVLRAERGVSRRQLADALGVHYQTVGYLERGEYSPSLHLALRI 65 Query: 63 SEVLESPISFFFDVSP 78 + + P+ F + P Sbjct: 66 AAFFDVPVEVLFSLDP 81 >gi|221195127|ref|ZP_03568183.1| putative prophage L54a, repressor protein [Atopobium rimae ATCC 49626] gi|221185030|gb|EEE17421.1| putative prophage L54a, repressor protein [Atopobium rimae ATCC 49626] Length = 217 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 35/82 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ I+ R ++QE+L E + + V ++E G ++ +Q I+ VL +S Sbjct: 1 MSLASNIKYYRQRENLTQEELAEKVDVARSTVTQWETGWSQPRMGAIQRIASVLNVSVSD 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 S ++ S + Sbjct: 61 LVADSISMNSTSRPAASITPTP 82 >gi|229159135|ref|ZP_04287181.1| hypothetical protein bcere0010_53010 [Bacillus cereus ATCC 4342] gi|228624336|gb|EEK81117.1| hypothetical protein bcere0010_53010 [Bacillus cereus ATCC 4342] Length = 274 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 38/83 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I+ R+I M+QE + L I+ Q + K+E G + + L +S + I Sbjct: 54 MDIGKKIKHLRLINKMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSIDS 113 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 + + I + N + Sbjct: 114 LLKEDSNLQNQIIKQSNYKRYLL 136 >gi|228926172|ref|ZP_04089247.1| hypothetical protein bthur0010_8920 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932427|ref|ZP_04095308.1| hypothetical protein bthur0009_9050 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|254725583|ref|ZP_05187365.1| hypothetical protein BantA1_24526 [Bacillus anthracis str. A1055] gi|228827117|gb|EEM72870.1| hypothetical protein bthur0009_9050 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833425|gb|EEM78987.1| hypothetical protein bthur0010_8920 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 149 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|212711628|ref|ZP_03319756.1| hypothetical protein PROVALCAL_02703 [Providencia alcalifaciens DSM 30120] gi|212685730|gb|EEB45258.1| hypothetical protein PROVALCAL_02703 [Providencia alcalifaciens DSM 30120] Length = 95 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 42/89 (47%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ +GK+I R + GMS + + + ++ QQ +YE+GVNR+ RL + + Sbjct: 7 PISRIIGKKITYYRKMNGMSLCDISKMIHVSEQQQSRYERGVNRINLDRLHQYARIFSID 66 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTP 98 + FF ++ +I + +T Sbjct: 67 LIDFFVLNEHDADNIKRNIEKQSNKDNTK 95 >gi|49082682|gb|AAT50741.1| PA4987 [synthetic construct] Length = 200 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R G++ +L +T + + E+ + L +I+ L I +F Sbjct: 19 FLGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLAYPSIPALFNIARSLGVTIQWF 78 Query: 74 FDVSPTVCSDIS 85 F V + Sbjct: 79 FASEAAVDPADA 90 >gi|84687520|ref|ZP_01015396.1| DNA-binding protein, putative [Maritimibacter alkaliphilus HTCC2654] gi|84664429|gb|EAQ10917.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2654] Length = 209 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+P +++G+R+R R G + E+ G+ + K E G L+ ++ L Sbjct: 22 APDPQPLDLGERVRDLRKSRGWTLEQAANQAGLARSTLSKIENGQMSPTFEALKKLAVGL 81 Query: 67 ESPISFFFD 75 E + F Sbjct: 82 EISVPQLFT 90 >gi|15600180|ref|NP_253674.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107104087|ref|ZP_01368005.1| hypothetical protein PaerPA_01005160 [Pseudomonas aeruginosa PACS2] gi|116053135|ref|YP_793456.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218894084|ref|YP_002442953.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254238300|ref|ZP_04931623.1| hypothetical protein PACG_04432 [Pseudomonas aeruginosa C3719] gi|254244126|ref|ZP_04937448.1| hypothetical protein PA2G_04965 [Pseudomonas aeruginosa 2192] gi|296391830|ref|ZP_06881305.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313110019|ref|ZP_07795924.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9951271|gb|AAG08372.1|AE004911_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115588356|gb|ABJ14371.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126170231|gb|EAZ55742.1| hypothetical protein PACG_04432 [Pseudomonas aeruginosa C3719] gi|126197504|gb|EAZ61567.1| hypothetical protein PA2G_04965 [Pseudomonas aeruginosa 2192] gi|218774312|emb|CAW30129.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310882426|gb|EFQ41020.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 199 Score = 52.5 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R G++ +L +T + + E+ + L +I+ L I +F Sbjct: 19 FLGTRIRGLRKRRGLTLAELAAQSELTAGYISQLERNLAYPSIPALFNIARSLGVTIQWF 78 Query: 74 FDVSPTVCSDIS 85 F V + Sbjct: 79 FASEAAVDPADA 90 >gi|304439932|ref|ZP_07399826.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371671|gb|EFM25283.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 138 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 34/67 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RIR R I G+SQ++L E LG++ Q + K+E + ++ +S+ E + Sbjct: 1 MNLSDRIRELRKIKGISQDELAEKLGVSRQAISKWENEQSIPDIDKIIMLSDYFEVSTDY 60 Query: 73 FFDVSPT 79 T Sbjct: 61 LLKGVET 67 >gi|304395821|ref|ZP_07377703.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304356190|gb|EFM20555.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 232 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 36/73 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+RIRL+R L ++Q+ L E G+ V +EK + + LQ +++ L+ ++ Sbjct: 17 MNMGERIRLKRKELNLTQQALAEKAGVNRVTVTGWEKDDYQPNGANLQALADALKCDPTW 76 Query: 73 FFDVSPTVCSDIS 85 S Sbjct: 77 LVSGKGESISSPL 89 >gi|317055082|ref|YP_004103549.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447351|gb|ADU20915.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 165 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 3/96 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++ R G+SQEKL E G++ + V ++E G S + +++ I Sbjct: 4 VKIGAFLKQLRNEKGLSQEKLAEVFGVSSRSVSRWENGRTMPDISIIIELADYYGIDIRE 63 Query: 73 FFDVS---PTVCSDISSEENNVMDFISTPDGLQLNR 105 + + D+ V D+ + R Sbjct: 64 LLNGERKSEDMNKDVKETLTMVADYTDKQKKQAILR 99 >gi|291551194|emb|CBL27456.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 170 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 48/105 (45%), Gaps = 7/105 (6%) Query: 1 MVGNKKIPNPVDINV-------GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR 53 M+ + + ++ + GK I L+R ++QE+L E LG++ + + K+E G Sbjct: 1 MMKEVPLYHQMNGGIHMNQLVTGKFIALKRKQKNLTQEQLAEKLGVSNKTISKWETGKCM 60 Query: 54 VGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 S ++ + E LE ++ D + + + + ++ + + Sbjct: 61 PDYSIVKSLCEELEVTVAELMDGEISEENSVRTYDDEQILDLLRR 105 >gi|239627441|ref|ZP_04670472.1| BcrR [Clostridiales bacterium 1_7_47_FAA] gi|239517587|gb|EEQ57453.1| BcrR [Clostridiales bacterium 1_7_47FAA] Length = 204 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++R R+ ++QE+L E L ++ + K+E G L+ IS+ I Sbjct: 5 EKLRQLRIGKNLTQEQLAEQLYVSRTAISKWEGGKGYPNIESLKCISKFFSITIDELLSG 64 Query: 77 SP 78 Sbjct: 65 EE 66 >gi|163791661|ref|ZP_02186057.1| DNA-binding protein [Carnobacterium sp. AT7] gi|159873083|gb|EDP67191.1| DNA-binding protein [Carnobacterium sp. AT7] Length = 170 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ R+ G SQ + + L I+ Q + K+E G + L +S E I Sbjct: 1 MALGERLKASRVNKGYSQGDVADYLHISRQSISKWENGNSYPDLDNLVKLSTYYEVSIDE 60 Query: 73 FFDVSPTVCSDISSEE 88 + + I E Sbjct: 61 LLKENQELKRKIEENE 76 >gi|160936523|ref|ZP_02083890.1| hypothetical protein CLOBOL_01413 [Clostridium bolteae ATCC BAA-613] gi|158440314|gb|EDP18059.1| hypothetical protein CLOBOL_01413 [Clostridium bolteae ATCC BAA-613] Length = 177 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 36/68 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R++ G++QE+L + ++ + + E+ + + L I + L + I Sbjct: 1 MEIGSKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGE 60 Query: 73 FFDVSPTV 80 FF+ +P Sbjct: 61 FFNETPDE 68 >gi|87201027|ref|YP_498284.1| putative prophage repressor [Novosphingobium aromaticivorans DSM 12444] gi|87136708|gb|ABD27450.1| putative prophage repressor [Novosphingobium aromaticivorans DSM 12444] Length = 227 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 1 MVGNKKIPNPVDINVG--KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M K + DI +G +R+ R G++Q L E +G+ +Q++E+G + Sbjct: 1 MAVPLKFASGQDIPMGYLERLAALRKRKGLTQVDLAERMGVEQPTIQRWERGQREPKFEQ 60 Query: 59 LQHISEVLESPISFFFDVS 77 L ++E+L S Sbjct: 61 LFRLAEILGVDASALLSKD 79 >gi|78485682|ref|YP_391607.1| XRE family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78363968|gb|ABB41933.1| transcriptional regulator, XRE family [Thiomicrospira crunogena XCL-2] Length = 198 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 33/81 (40%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 ++K +D+++GK I R G++ + E GI+ + K E G L IS Sbjct: 2 SEKEHQTLDLHIGKIINNARKKQGLTIADIAEQSGISRGMLSKIENGQVSPSLDSLLKIS 61 Query: 64 EVLESPISFFFDVSPTVCSDI 84 L PIS FF Sbjct: 62 RTLGVPISSFFREFDNEEGGA 82 >gi|331091855|ref|ZP_08340687.1| hypothetical protein HMPREF9477_01330 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402754|gb|EGG82321.1| hypothetical protein HMPREF9477_01330 [Lachnospiraceae bacterium 2_1_46FAA] Length = 177 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 36/73 (49%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VGK+IR R G SQ +L E GI ++KYE G+ +L+ I+ L +S F Sbjct: 1 MVGKKIRAYREFRGYSQIQLAELSGINVGTIRKYELGIRNPKPDQLEKIATALGLNVSVF 60 Query: 74 FDVSPTVCSDISS 86 D + D+ S Sbjct: 61 LDFNIETVGDVLS 73 >gi|325688485|gb|EGD30502.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 150 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 16/132 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R+ G +Q +L E L ++ V K+E N L++++ + + Sbjct: 4 VGERIKKLRIAQGFTQARLAEILHVSKAAVCKWESNTNLPKVMELKNMNSLFHVSADYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV-------RSIV 127 ++ + S E + YF Q++ + +Q I+ V ++ Sbjct: 64 GLANRSAIEQLSSE---------KKLEAMAGYFHQLESPERQQACIDFVISQFNEQEAVK 114 Query: 128 SSEKKYRTIEEE 139 +K + +E Sbjct: 115 IEAEKIQRALDE 126 >gi|291550659|emb|CBL26921.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Ruminococcus torques L2-14] Length = 298 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 39/79 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK I +R LGM+Q++L E L ++ + V K+E+G+ S + E+L I+ Sbjct: 4 VKIGKYIAGKRKALGMTQKQLAEKLNMSDKSVSKWERGICLPDVSVYMELCEILGISINE 63 Query: 73 FFDVSPTVCSDISSEENNV 91 F ++ + + Sbjct: 64 FLAGEDIDAENVEKKSEDN 82 >gi|255526983|ref|ZP_05393876.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185146|ref|ZP_06853556.1| cupin domain protein [Clostridium carboxidivorans P7] gi|255509342|gb|EET85689.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049980|gb|EFG89404.1| cupin domain protein [Clostridium carboxidivorans P7] Length = 181 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 49/113 (43%), Gaps = 6/113 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++IR R ++ + L G++ + + E + + + L+ IS+ L I++F Sbjct: 4 EIAQKIRDLRKEKNLTLKDLSNETGLSISFLSQVENNSSSLAITSLKKISDALGVNINYF 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 F++ + SE+ + N FI++ +K+ ++ +I Sbjct: 64 FEIPEVNNFLVKSEDEKPFKIEGS------NSEFIRLSGEFPNRKLEAMITTI 110 >gi|229171786|ref|ZP_04299358.1| hypothetical protein bcere0006_9040 [Bacillus cereus MM3] gi|228611683|gb|EEK68933.1| hypothetical protein bcere0006_9040 [Bacillus cereus MM3] Length = 149 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|326774009|ref|ZP_08233291.1| transcriptional regulator [Actinomyces viscosus C505] gi|326636148|gb|EGE37052.1| transcriptional regulator [Actinomyces viscosus C505] Length = 146 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 23/64 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + I R +QE L +G++ Q + K+E S ++ V + I Sbjct: 1 MINSNIATLRKKHRWTQEALANKVGVSRQTIAKWEAPGGNPDISSCVRLAHVFDVSIDDL 60 Query: 74 FDVS 77 + Sbjct: 61 VNGD 64 >gi|332971234|gb|EGK10197.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 108 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 31/82 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R ++Q +L + LG+ + K+E + ++ I++ + Sbjct: 4 GQRLKELRKKRKITQAELAKVLGVDNTTISKWESNTYEPEMTAIKEIADFFNVSADYLLG 63 Query: 76 VSPTVCSDISSEENNVMDFIST 97 + + + D + Sbjct: 64 RTNVPSQFETEAAHRTDDPMDD 85 >gi|325688449|gb|EGD30467.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 205 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R + G+SQE L + LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKVRGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 E++ I++ QL+ F+ + Sbjct: 61 LLKGV-EPVVQKEEEQSIKHRRIASNICYQLSLGFVGL 97 >gi|259502266|ref|ZP_05745168.1| DNA-binding protein [Lactobacillus antri DSM 16041] gi|259169884|gb|EEW54379.1| DNA-binding protein [Lactobacillus antri DSM 16041] Length = 204 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 37/96 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ +R LG++Q + L +T Q + +E+G + + L +SEV + Sbjct: 6 QIKEQRKKLGLTQADVAHQLFVTRQTISNWEQGKSYPDLAMLVKLSEVYRISLDTLLKGD 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + S + + + L F I D Sbjct: 66 RRLKSYLEQGKAYNAFSVFKGLFFILYGLFFLITDE 101 >gi|256396415|ref|YP_003117979.1| hypothetical protein Caci_7309 [Catenulispora acidiphila DSM 44928] gi|256362641|gb|ACU76138.1| protein of unknown function DUF955 [Catenulispora acidiphila DSM 44928] Length = 283 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 3/110 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGIT--FQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + VG+RIR R G SQ +L L + +E G VG L ++ VL I Sbjct: 6 VEVGQRIRAARTRRGWSQAELAARLAGQPTPTAISYWESGRRSVGLDDLIELARVLGLGI 65 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 S P + + V + + + F + + + R ++ Sbjct: 66 SELL-PDPREQRPVGALLRAVAEQVDAQQLAEQLEAFAKDAEQRPRPSLL 114 >gi|255103016|ref|ZP_05331993.1| putative regulatory protein [Clostridium difficile QCD-63q42] Length = 122 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 39/105 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI++ R+ ++QE L E + ++ Q V E G + V L I+ L + Sbjct: 6 KFIGQRIKIARIKKKLTQEVLSEKINVSPQHVSNIETGNSSVSLPTLVAIANTLGVSVDE 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + E + ++ ++ +R Sbjct: 66 LLCDTILSSKAVFENELEEVLRDCNEYEIRFITDIVKASKKSIRD 110 >gi|212224500|ref|YP_002307736.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] gi|212009457|gb|ACJ16839.1| Hypothetical transcription regulator [Thermococcus onnurineus NA1] Length = 68 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G++QE+L + LG+T Q + EKG I+ I F Sbjct: 3 NRVRELREARGLTQEELAKALGVTRQTIIAIEKGKYDPSLKLAFKIARFFGVLIEDIF 60 >gi|28898552|ref|NP_798157.1| DNA-binding transcriptional repressor PuuR [Vibrio parahaemolyticus RIMD 2210633] gi|153836272|ref|ZP_01988939.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ3810] gi|260365009|ref|ZP_05777580.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus K5030] gi|260879596|ref|ZP_05891951.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AN-5034] gi|260894929|ref|ZP_05903425.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus Peru-466] gi|260901062|ref|ZP_05909457.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ4037] gi|28806770|dbj|BAC60041.1| putative transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|149750547|gb|EDM61292.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ3810] gi|308085951|gb|EFO35646.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus Peru-466] gi|308093441|gb|EFO43136.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AN-5034] gi|308110714|gb|EFO48254.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus AQ4037] gi|308111572|gb|EFO49112.1| HTH-type transcriptional regulator PuuR [Vibrio parahaemolyticus K5030] gi|328468839|gb|EGF39799.1| DNA-binding transcriptional repressor PuuR [Vibrio parahaemolyticus 10329] Length = 185 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 31/73 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +GK I R G+SQ +L E GIT + E G S LQ I V +S Sbjct: 3 NHEIGKNIVQLRKKHGLSQRELAERAGITHSAISSIENGKVSPSVSSLQKIVNVFSLSLS 62 Query: 72 FFFDVSPTVCSDI 84 FF + ++ Sbjct: 63 EFFIFEQSSNDEV 75 >gi|296110966|ref|YP_003621347.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] gi|295832497|gb|ADG40378.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] Length = 134 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 47/102 (46%), Gaps = 1/102 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DI ++++ R LGMSQE + + L I+ Q + ++E G + L ++++ + + Sbjct: 2 MDILFPQQLKKYRTKLGMSQEDIADKLFISRQAISRWESGDATPDLTNLIKLTDIFDCSL 61 Query: 71 SFFFDVSPTVCSDIS-SEENNVMDFISTPDGLQLNRYFIQID 111 P +D + ++ + +F P + R ++ Sbjct: 62 DSLVLGVPQQQTDTNGQDKIDNSEFTFDPRKGEYIRRHHSMN 103 >gi|284991477|ref|YP_003410031.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064722|gb|ADB75660.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 195 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 2/114 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + + V VG R+R R+ G + +L E GI+ + + E G R L Sbjct: 1 MADDETTDAVLTAVGPRLRALRVRRGRTLAQLSEETGISVSTLSRLESGQRRPTLELLLP 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDV 113 ++ P+ T + S P + + F Q+ Sbjct: 61 LARSHRVPLDELVGAPETGDPRVHPRPVVHHGVTSLPLTRRPGGVQAFKQVYPP 114 >gi|226311800|ref|YP_002771694.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226094748|dbj|BAH43190.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 183 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 42/85 (49%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +V K+IR R+ ++ + L E G + + + E+G + + + LQ I+E L PI++F Sbjct: 3 HVYKKIRALRIQQELTLKDLSEKSGFSVSFLSQVERGNSSLAITSLQKIAECLGVPITYF 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTP 98 F+V V + + +P Sbjct: 63 FEVDKDVTYHTPIAKRKTLQIEGSP 87 >gi|167574113|ref|ZP_02366987.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia oklahomensis C6786] Length = 191 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V ++G +IR R L ++ ++ GI+ + + E+G + L I+ L + Sbjct: 11 VAASIGIKIRALRQRLKLTLDEAAAAAGISKPFLSQVERGRATPSITSLVGIARALGVTM 70 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 +F D S SE ++ F ++ +V +++ ++ + +++ Sbjct: 71 QYFVDAPTEARSVCRSEALQYFSLANS------TNAFARLTNVVDGRQLDAILVRMPAAQ 124 >gi|167567036|ref|ZP_02359952.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia oklahomensis EO147] Length = 191 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V ++G +IR R L ++ ++ GI+ + + E+G + L I+ L + Sbjct: 11 VAASIGIKIRALRQRLKLTLDEAAAAAGISKPFLSQVERGRATPSITSLVGIARALGVTM 70 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 +F D S SE ++ F ++ +V +++ ++ + +++ Sbjct: 71 QYFVDAPTEARSVCRSEALQYFSLANS------TNAFARLTNVVDGRQLDAILVRMPAAQ 124 >gi|270291965|ref|ZP_06198180.1| conserved hypothetical protein [Streptococcus sp. M143] gi|270279493|gb|EFA25335.1| conserved hypothetical protein [Streptococcus sp. M143] Length = 165 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + + D Sbjct: 61 LLLDENSEKASTAVILEEDKD 81 >gi|229179916|ref|ZP_04307262.1| Helix-turn-helix domain protein [Bacillus cereus 172560W] gi|228603597|gb|EEK61072.1| Helix-turn-helix domain protein [Bacillus cereus 172560W] Length = 277 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 19 GEKLFKLRKEKGLSQEALAEKLNTTRQGVSKWENGQGFPETGKLIMIGNVFEVSLDYLLK 78 Query: 76 VSPTVCSDISS 86 + ++ Sbjct: 79 ETAEQSNENVD 89 >gi|164687559|ref|ZP_02211587.1| hypothetical protein CLOBAR_01200 [Clostridium bartlettii DSM 16795] gi|164603333|gb|EDQ96798.1| hypothetical protein CLOBAR_01200 [Clostridium bartlettii DSM 16795] Length = 139 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G+SQE+L L + Q + K+EKG++ A L I+++ E +S Sbjct: 4 ENLKQLRKSKGLSQEELAIRLNVVRQTISKWEKGLSVPDADMLIKIADIFEVSVSELLGA 63 Query: 77 SPTVCSD 83 + Sbjct: 64 KIEEKKE 70 >gi|313677598|ref|YP_004055594.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312944296|gb|ADR23486.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 256 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + I+ R G +Q+ L + LG+ Q+ YE+G L +S++ + Sbjct: 4 INNNIKYLRKEKGWTQQDLADELGVKRPQIGSYEEGRADPRIQTLLKLSDLFNVSVDDLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + ++ + V+ + Q Sbjct: 64 GKDLSSPMVVTKKPTKVLAITVDSQERENIELVPQ 98 >gi|228969395|ref|ZP_04130242.1| hypothetical protein bthur0004_60930 [Bacillus thuringiensis serovar sotto str. T04001] gi|228790357|gb|EEM38097.1| hypothetical protein bthur0004_60930 [Bacillus thuringiensis serovar sotto str. T04001] Length = 108 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 32/90 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ KR+ R G +Q + L I +E G A + +++E+ I Sbjct: 3 HLSKRLAELRKKQGYTQFDVAYRLNIARTTYANWEYGKADPDADSIMNLAEIYNVSIDEL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQL 103 F + + S + + + D L Sbjct: 63 FGRNAPLESKLELIKVAISDLPLQKQQEVL 92 >gi|90581157|ref|ZP_01236956.1| Hypothetical transcriptional regulator [Vibrio angustum S14] gi|90437678|gb|EAS62870.1| Hypothetical transcriptional regulator [Vibrio angustum S14] Length = 130 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 37/92 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ ++IR R G++Q + + LG+ Q E G L +I+++ P+ +F Sbjct: 22 HIAQKIREAREWKGITQVSMAKQLGVARQTYLDVESGKTEPRILMLMNIAKITGRPLHWF 81 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + + + + +P ++ Sbjct: 82 ISDDNIPEYGDINRLSVMYAQVPSPLRQKMIE 113 >gi|299534571|ref|ZP_07047903.1| hypothetical protein BFZC1_01042 [Lysinibacillus fusiformis ZC1] gi|298729944|gb|EFI70487.1| hypothetical protein BFZC1_01042 [Lysinibacillus fusiformis ZC1] Length = 180 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 39/78 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ G++QE+LGE ++ + + E+ +N L I EVL S Sbjct: 1 MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSRPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD + +EE+ Sbjct: 61 FFDDESPEQKVVYTEEDQ 78 >gi|221194780|ref|ZP_03567837.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] gi|221185684|gb|EEE18074.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] Length = 364 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 30/77 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L L ++ Q V K+E ++ +SE+ + Sbjct: 1 MLLSEKIMSLRKRNGWSQEELARQLNVSRQSVSKWESMAAMPDIQKIMAMSELFGVSTDY 60 Query: 73 FFDVSPTVCSDISSEEN 89 ++ + Sbjct: 61 LLKDEMEDLPATATSLD 77 >gi|86159419|ref|YP_466204.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85775930|gb|ABC82767.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] Length = 477 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 42/123 (34%), Gaps = 1/123 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G ++R R ++Q +L + LGI+ + E + A L ++++ E + Sbjct: 7 HLGAKVRALRRQRNLTQAQLADRLGISASYLNLIEHHRRPLPAQLLIKLADLFELDLKSL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 E F R + ++ L ++ ++ + Sbjct: 67 STEHHARVVADLMEVFGDPLFEPHDVTNAEVRDLAS-SSPTAARAVLSLYQAYRAAREAS 125 Query: 134 RTI 136 T+ Sbjct: 126 DTL 128 >gi|330468037|ref|YP_004405780.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811008|gb|AEB45180.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 192 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 10/118 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N+ V VG R+R R G + +L + GI+ + + E G R L Sbjct: 1 MANNE----AVLAAVGPRLRALRKNRGTTLSELADTTGISVSTLSRLESGQRRPTLELLL 56 Query: 61 HISEVLESPISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + P+ P V ++ G + F QI Sbjct: 57 PLARAHQVPLDELVGAPAVGDPRVHPRPIVRHGTTFLPLTRRPGG--LQAFKQILPPH 112 >gi|312126619|ref|YP_003991493.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776638|gb|ADQ06124.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 118 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 46/110 (41%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V +G+++R R G +QE++ + LGIT +Q+ YE G + + LQ ++ + Sbjct: 1 MKEEVYKKIGEKLRELRKQRGFTQEQVAKYLGITQEQLSYYETGAREISVATLQALARLY 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + ++ + + F+ D+ R Sbjct: 61 GCDYNYLLSDDEQLNTQVAINFRADEIADEDLEVIAFANEFVMNLDMMYR 110 >gi|239832075|ref|ZP_04680404.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] gi|239824342|gb|EEQ95910.1| Hypothetical protein, conserved [Ochrobactrum intermedium LMG 3301] Length = 490 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 9/135 (6%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+ P + +G++IR R +Q E LGI+ + + E V A+ L ++E Sbjct: 20 KMA-PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAEN 78 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + I SE F + LQ + Q L + Sbjct: 79 YQIDIGAISLGDDDRLLSAVSEALADPVFDNYKPNLQELKLITQNAP--------GLAHA 130 Query: 126 IVSSEKKYRTIEEEC 140 +++ + YR E+ Sbjct: 131 LIACHQAYRRNSEQL 145 >gi|239623815|ref|ZP_04666846.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239521846|gb|EEQ61712.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 186 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ VG+ IR R ++ + G++ + + EKG S L I+ + Sbjct: 5 INLEVGRNIRRLREAKKLTLDGAAAATGVSRSMLAQIEKGDVNPTISVLWKIANGYKVSF 64 Query: 71 SFFFDVSPTVCSDISS 86 + + + I + Sbjct: 65 TSLVETGMEDAAVIRA 80 >gi|224024133|ref|ZP_03642499.1| hypothetical protein BACCOPRO_00855 [Bacteroides coprophilus DSM 18228] gi|224017355|gb|EEF75367.1| hypothetical protein BACCOPRO_00855 [Bacteroides coprophilus DSM 18228] Length = 192 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 48/110 (43%), Gaps = 3/110 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++I+ R ++ E+L E G++ +Q++ E+ +N + L I+ L + Sbjct: 5 KIIGEKIKALRTAQEITLEELAERTGLSKEQIESIEQNINIPSLAPLVKIARALGVRLGT 64 Query: 73 FFDVSPTVCSDIS---SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 F D P + E ++ + F + + N ++ + K + + Sbjct: 65 FLDDQPNENGPVVCRCGEADDTISFSNNSPDARQNLHYHSLSRSKTDRHM 114 >gi|118588013|ref|ZP_01545423.1| transcriptional regulator, XRE family with cupin sensor domain [Stappia aggregata IAM 12614] gi|118439635|gb|EAV46266.1| transcriptional regulator, XRE family with cupin sensor domain [Stappia aggregata IAM 12614] Length = 224 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 3/121 (2%) Query: 1 MVGNK-KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M + + + VD VG IR RR LG++ ++LG+ ++ + + E+ L Sbjct: 1 MSSSTARAASDVDTKVGALIRARRRQLGLTLQQLGDASNLSVGYLSQVERDHATPTLGSL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 I+ L + +F V+ D + +F + + R + ++ I Sbjct: 61 AGIARALGVGLDYF--VAQPRAQDALTRAATRPNFSISGSAVSYERLATEFPGNQLSSFI 118 Query: 120 I 120 + Sbjct: 119 L 119 >gi|853809|emb|CAA60798.1| unnamed protein product [Clostridium perfringens] Length = 265 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 39/78 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++++L R G+SQE L E LGI+ Q V K+E G + ++L +SE+ I + Sbjct: 1 MKLAEKLQLMRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDY 60 Query: 73 FFDVSPTVCSDISSEENN 90 + E +N Sbjct: 61 LVKETYEFEGSQEKEISN 78 >gi|332202990|gb|EGJ17058.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 164 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 4/101 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD- 75 RI+ R ++Q +L I ++ +Q++E G + + Q +++ I Sbjct: 2 NRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKSDAAQVLADYFGVSIPHLLGY 61 Query: 76 ---VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 ++ T + ++++ F+ + + FI+ +D Sbjct: 62 SDLIADTDSDIKAMAYSHLLTFVDEKQIKEFEKEFIRANDN 102 >gi|330817706|ref|YP_004361411.1| transcriptional regulator [Burkholderia gladioli BSR3] gi|327370099|gb|AEA61455.1| transcriptional regulator [Burkholderia gladioli BSR3] Length = 183 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 7/118 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + V R++ R G+SQ +L + G+T + E+ L+ + E + + Sbjct: 1 MSVEVATRLQFIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + FF + + + + + L VR++ I L+R + Sbjct: 61 AEFFTFEFEDDAPVVWRRDEMPNLGDEATPRYLAGA-------TVRERAITLLRQVYE 111 >gi|169826912|ref|YP_001697070.1| hypothetical protein Bsph_1332 [Lysinibacillus sphaericus C3-41] gi|168991400|gb|ACA38940.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 180 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 39/78 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ G++QE+LGE ++ + + E+ +N L I EVL S Sbjct: 1 MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSTPKE 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD + +EE+ Sbjct: 61 FFDDESPEQKVVYTEEDQ 78 >gi|325687772|gb|EGD29793.1| phage transcriptional repressor [Streptococcus sanguinis SK72] gi|327461118|gb|EGF07451.1| phage transcriptional repressor [Streptococcus sanguinis SK1057] Length = 242 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GKR++ +R+ GM+Q ++ + + I +E G + L ++ +L ++F Sbjct: 17 GKRLKQKRIEKGMTQAEIADIIRINRSSYNSWESGRAKPNQKNLSALASILGVSDTYF 74 >gi|239504169|ref|ZP_04663479.1| putative repressor protein from bacteriophage [Acinetobacter baumannii AB900] Length = 254 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR R ++Q +L + G++ V +EK A L ++ S+ + Sbjct: 8 GQRIRALRREKKLTQGELAKIAGVSAPNVTGWEKDAYAPKADPLSKMAAYFGVSTSYITN 67 Query: 76 VSPTVCS 82 + Sbjct: 68 GDESGPK 74 >gi|229083904|ref|ZP_04216210.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-44] gi|228699402|gb|EEL52081.1| Helix-turn-helix domain protein [Bacillus cereus Rock3-44] Length = 262 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R G+SQE L E L + Q + K+E G +L I + E + + Sbjct: 1 MAFGEKLFKLRKEKGLSQEALAEKLNTSRQAISKWENGQGFPETEKLLMIGNIFEVSVDY 60 Query: 73 FFDVSPTVCSDISS 86 + ++ Sbjct: 61 LLKDTAKQSNENEP 74 >gi|154495860|ref|ZP_02034556.1| hypothetical protein BACCAP_00140 [Bacteroides capillosus ATCC 29799] gi|150275058|gb|EDN02106.1| hypothetical protein BACCAP_00140 [Bacteroides capillosus ATCC 29799] Length = 253 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 44/110 (40%), Gaps = 5/110 (4%) Query: 9 NPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N +D G + R ++Q++L E L ++ + V K+E+G++ L +++ L Sbjct: 2 NDIDKERFGGFLLQLRREKNLTQKELAERLFVSDKAVSKWERGLSLPDVGLLLPMADCLG 61 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++ T + + EE LQL Q + R+ Sbjct: 62 VTVTELLRGERTAAAQLPVEEVE----ALVKSTLQLTEEERQAQKTRRRK 107 >gi|313900820|ref|ZP_07834310.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312954240|gb|EFR35918.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 162 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 37/90 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +I R GM+Q++L + +G++ Q V K+E ++ L +S+ + Sbjct: 2 KALGTKISELRKARGMTQDELADKMGVSPQAVSKWENDLSMPDLPVLIELSDFFHISLDD 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 F + ++ ++ + + Sbjct: 62 FLKEKVQTVELLPEDKRKDIEQMFLRVYVD 91 >gi|210623799|ref|ZP_03294059.1| hypothetical protein CLOHIR_02010 [Clostridium hiranonis DSM 13275] gi|210153381|gb|EEA84387.1| hypothetical protein CLOHIR_02010 [Clostridium hiranonis DSM 13275] Length = 359 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 6/124 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-D 75 ++I R G SQE+L E L I+ Q V K+E G + +L ISE+ E + D Sbjct: 5 EKIMNLRKKNGWSQEELAERLDISRQSVSKWESGESVPTLEKLIRISEIFEVSTDYLLKD 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 D + + + I +II ++ + K+ +T Sbjct: 65 DFKEEKFDRNKSSIYMNKIEESSYINN-----RNISSDIAIDRIIGEEKANENVIKRRKT 119 Query: 136 IEEE 139 EE Sbjct: 120 SFEE 123 >gi|187940017|gb|ACD39152.1| hypothetical protein PACL_0364 [Pseudomonas aeruginosa] Length = 112 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 1/84 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR R G+ QE++ E GI + YE G R+ I+ L Sbjct: 1 MAIGENIRKARERKGLRQEQVAEMAGIPLSTYKNYEHGKQPPPGDRIGAIARTLGVSADE 60 Query: 73 F-FDVSPTVCSDISSEENNVMDFI 95 F+ S +D + + Sbjct: 61 LVFEESERQVADELRALFKRFEVL 84 >gi|254359387|ref|ZP_04975659.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|148028574|gb|EDK86534.1| DNA-binding protein [Burkholderia mallei 2002721280] Length = 201 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 55/143 (38%), Gaps = 10/143 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 N ++ N + +G +IR R L + ++ GI+ + + E+G+ + L Sbjct: 13 TENTRLANA-GVALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAG 71 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L + +F + S ++ F + F ++ +V +++ Sbjct: 72 IAHALGVTVQYFVETPSEERSVCRGDQLRFFSFADS------ANLFARLTNVPEGRQLEA 125 Query: 122 LVRSIVSSEKKYR---TIEEECM 141 ++ + +K+ EE + Sbjct: 126 ILVRMPPGQKRSEVTTHAGEEFL 148 >gi|187919154|ref|YP_001888185.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717592|gb|ACD18815.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 190 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 7/134 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV + NP + +G +IR R L + + GI+ + + E+G+ + L Sbjct: 1 MVTTIQKSNP-ALEIGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLA 59 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+ L + +F D ++ F + F ++ ++ +++ Sbjct: 60 GIAHALGVTVQYFVDTPSEERCVSRGDQLKFFGFADS------ANLFARLTNLTGGRQLE 113 Query: 121 ELVRSIVSSEKKYR 134 ++ + +K+ Sbjct: 114 AILVRMPPGQKRSE 127 >gi|53723158|ref|YP_112143.1| MerR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|134281916|ref|ZP_01768623.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|254264128|ref|ZP_04954993.1| DNA-binding protein [Burkholderia pseudomallei 1710a] gi|52213572|emb|CAH39625.1| putative MerR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|134246978|gb|EBA47065.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|254215130|gb|EET04515.1| DNA-binding protein [Burkholderia pseudomallei 1710a] Length = 193 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 55/143 (38%), Gaps = 10/143 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 N ++ N + +G +IR R L + ++ GI+ + + E+G+ + L Sbjct: 5 TENTRLANA-GVALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAG 63 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L + +F + S ++ F + F ++ +V +++ Sbjct: 64 IAHALGVTVQYFVETPSEERSVCRGDQLRFFSFADS------ANLFARLTNVPEGRQLEA 117 Query: 122 LVRSIVSSEKKYR---TIEEECM 141 ++ + +K+ EE + Sbjct: 118 ILVRMPPGQKRSEVTTHAGEEFL 140 >gi|76817605|ref|YP_336411.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|76582078|gb|ABA51552.1| DNA-binding protein [Burkholderia pseudomallei 1710b] Length = 236 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/143 (15%), Positives = 55/143 (38%), Gaps = 10/143 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 N ++ N + +G +IR R L + ++ GI+ + + E+G+ + L Sbjct: 48 TENTRLANA-GVALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAG 106 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L + +F + S ++ F + F ++ +V +++ Sbjct: 107 IAHALGVTVQYFVETPSEERSVCRGDQLRFFSFADS------ANLFARLTNVPEGRQLEA 160 Query: 122 LVRSIVSSEKKYR---TIEEECM 141 ++ + +K+ EE + Sbjct: 161 ILVRMPPGQKRSEVTTHAGEEFL 183 >gi|88802521|ref|ZP_01118048.1| putative prophage LambdaCh01, repressor protein [Polaribacter irgensii 23-P] gi|88781379|gb|EAR12557.1| putative prophage LambdaCh01, repressor protein [Polaribacter irgensii 23-P] Length = 245 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK I+ R+I G+SQ+ E + + YE+G + L ++ I F Sbjct: 5 GKNIKKIRVIKGLSQQVFAELFSLKRATLGAYEEGRSEPKIDTLIKVANYFSISIDDFLT 64 Query: 76 VS 77 Sbjct: 65 KE 66 >gi|323126526|gb|ADX23823.1| transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 227 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 51/116 (43%), Gaps = 26/116 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+ + E LGI++Q +E+GV A ++ + ++L P +F + Sbjct: 5 EKLKERRKELKLTQKDIAEKLGISYQAYSAWERGVKEPSAEKVSQLEKLLNVPKGYFTE- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 +++ R + + ++K++ R +V E + Sbjct: 64 ------------------------IEIVRLYNTLSS-SGKEKVVTYARDLVQEESQ 94 >gi|306844614|ref|ZP_07477201.1| Cro/CI family transcriptional regulator [Brucella sp. BO1] gi|306275058|gb|EFM56821.1| Cro/CI family transcriptional regulator [Brucella sp. BO1] Length = 470 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 8/139 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K I G RIR R ++Q + E LGI+ + E+ + L Sbjct: 1 MSERK------IFAGPRIRRIRNERSLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLK 54 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ V + + S + + + ++ + P +L + V I++ Sbjct: 55 LASVYKLDLDSLQAESGSTITGLKEVFSDPLLTGELPGDQELVEIGEAAPNAAV--GIMK 112 Query: 122 LVRSIVSSEKKYRTIEEEC 140 L R+ +++ + + Sbjct: 113 LYRAYREQQQRLSDLSKLL 131 >gi|255652581|ref|ZP_05399483.1| hypothetical protein CdifQCD_20531 [Clostridium difficile QCD-37x79] Length = 149 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 52/136 (38%), Gaps = 10/136 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R+ G+ Q +L E L ++ + YE A + ++E + Sbjct: 3 GERLKKLRIKFGLKQHELAEILNVSQSTIGMYENDQRTPPAESIVKLAEYFNVTTDYLLG 62 Query: 76 VSPT---------VCSDISSEENNVMDFISTPDGLQLNRYFIQ-IDDVKVRQKIIELVRS 125 + T I E+ ++ D + ++ + +++ ++ E+++ Sbjct: 63 HTKTNYLVSANIPGMPSIICEDTSIYDIVDEKKDIKSLEDINKFLENNNYNDEVKEVLKK 122 Query: 126 IVSSEKKYRTIEEECM 141 + ++ R E + Sbjct: 123 YMQLDEMDRKAIERMI 138 >gi|189009165|ref|YP_001928047.1| putative transcriptional regulator [Klebsiella pneumoniae] gi|171850706|gb|ACB55445.1| putative transcriptional regulator [Klebsiella pneumoniae] Length = 119 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 6/117 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V KR++ R +G+SQEKL E +GI T ++ YE G S +Q I++VL P Sbjct: 1 MVPKRLKEARKAVGLSQEKLSELIGIEGVSTRSRLSSYEIGRTEPPFSLVQKIADVLGYP 60 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +F+ + + N + + + Q+DD R+ +++L + Sbjct: 61 EYYFYTANDVTAKILLEMHKNGKQPTNASIADEARKMAEQLDDA--RKLVVQLTECL 115 >gi|225375839|ref|ZP_03753060.1| hypothetical protein ROSEINA2194_01471 [Roseburia inulinivorans DSM 16841] gi|225212274|gb|EEG94628.1| hypothetical protein ROSEINA2194_01471 [Roseburia inulinivorans DSM 16841] Length = 142 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 49/139 (35%), Gaps = 29/139 (20%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + NK +P ++++ R + +Q+ + E LG+ Q YE G A Sbjct: 1 MKNKLLP--------QKLKELRKVNNYTQDYVAEVLGVVRQTYSHYETGKRTPDAEAFYK 52 Query: 62 ISEVLESPISFFFDV----------SPTVCSDISSEENNVMDFISTPDG----------- 100 ++ + + + + S++ + ++F + P Sbjct: 53 LAGLYNISVDDLLHLTIDIDREESYDAPAPTQASTDLSEFLEFFNDPSNKKKYMFNTNLE 112 Query: 101 LQLNRYFIQIDDVKVRQKI 119 +L YF +I D ++ I Sbjct: 113 RELLFYFDKISDEDKKEII 131 >gi|323702873|ref|ZP_08114531.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323532131|gb|EGB22012.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 132 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 3/132 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + NK + + +G+RIR R LG+S+E+ E +G++ V + E+G ++ L Sbjct: 1 MENKVEID--NKTIGQRIREEREKLGLSREEFAEIIGLSNYYVGQLERGERQMSLPVLVK 58 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I L + + + +E V + + ++N + K + + Sbjct: 59 IVNCLHVSLDYLIFGKDYQNAGNVNESQIVYEACNYNKVKEINNLLSKC-SPKELELFKK 117 Query: 122 LVRSIVSSEKKY 133 L+++I+ K Sbjct: 118 LIKTILPYMSKK 129 >gi|323487309|ref|ZP_08092609.1| hypothetical protein HMPREF9474_04360 [Clostridium symbiosum WAL-14163] gi|323694251|ref|ZP_08108427.1| hypothetical protein HMPREF9475_03291 [Clostridium symbiosum WAL-14673] gi|323399354|gb|EGA91752.1| hypothetical protein HMPREF9474_04360 [Clostridium symbiosum WAL-14163] gi|323501724|gb|EGB17610.1| hypothetical protein HMPREF9475_03291 [Clostridium symbiosum WAL-14673] Length = 126 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 57/121 (47%), Gaps = 3/121 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ +G +Q+++ + +GIT YE G + ++++ ++++L++ F + Sbjct: 5 ERLKEARISVGYTQQQVADAMGITNSTYCGYETGKRQPDVAKIKQLAKILKTSGDFLLE- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 T + SEE+ D + ++ D + + L+ ++ +KK + Sbjct: 64 --TGFVPVGSEEDKTDISCCHEDYVADIFANFELLDNDYKNVVENLIIQLLDIQKKNQQT 121 Query: 137 E 137 + Sbjct: 122 Q 122 >gi|310828555|ref|YP_003960912.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612] gi|308740289|gb|ADO37949.1| hypothetical protein ELI_2980 [Eubacterium limosum KIST612] Length = 268 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 34/83 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R G SQE L E +G++ Q V K+E G++ + L +SE+ E + Sbjct: 5 ERLFQLRKQKGFSQETLAERMGVSRQAVSKWESGLSNPDINNLVFLSEIFEVSLDELIKG 64 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 S+ V S Sbjct: 65 EAPQASEKEETIKIVEVPCSRHY 87 >gi|153954474|ref|YP_001395239.1| phage transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347355|gb|EDK33891.1| Predicted phage transcriptional regulator [Clostridium kluyveri DSM 555] Length = 268 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 33/61 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+ I+ R G++Q++L + + +T +Q YE + L I++VL I+ Sbjct: 1 MNIGENIKRIRTQKGLTQKELAKSIHVTPTTIQNYENNRRKPSVDTLDKIAKVLGVTINS 60 Query: 73 F 73 F Sbjct: 61 F 61 >gi|325660971|ref|ZP_08149598.1| hypothetical protein HMPREF0490_00330 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472478|gb|EGC75689.1| hypothetical protein HMPREF0490_00330 [Lachnospiraceae bacterium 4_1_37FAA] Length = 181 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 28/66 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + I+ R ++Q++L + L ++ Q V ++EKG + ++ L+ + Sbjct: 32 MALNDNIKKFREEKNLTQQQLADKLYVSRQTVCRWEKGSRCPDLITAKKLALELDVSVDE 91 Query: 73 FFDVSP 78 Sbjct: 92 LISDED 97 >gi|313902341|ref|ZP_07835745.1| helix-turn-helix domain protein [Thermaerobacter subterraneus DSM 13965] gi|313467389|gb|EFR62899.1| helix-turn-helix domain protein [Thermaerobacter subterraneus DSM 13965] Length = 435 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR RR LGM+QE+L L + + E LQ ++ L P+++F Sbjct: 1 MIGDRIRARRRELGMTQEQLAAGLF-DRSYISRIEANEVVPPLPTLQLLAGRLGKPVAYF 59 Query: 74 FDVSPT 79 Sbjct: 60 LGDEDA 65 >gi|227824270|ref|ZP_03989102.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229827135|ref|ZP_04453204.1| hypothetical protein GCWU000182_02520 [Abiotrophia defectiva ATCC 49176] gi|331084539|ref|ZP_08333639.1| hypothetical protein HMPREF0992_02563 [Lachnospiraceae bacterium 6_1_63FAA] gi|157816229|gb|ABV82121.1| HTH domain protein [Eubacterium saburreum] gi|157816232|gb|ABV82123.1| HTH domain protein [Streptococcus salivarius] gi|226904769|gb|EEH90687.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|229788753|gb|EEP24867.1| hypothetical protein GCWU000182_02520 [Abiotrophia defectiva ATCC 49176] gi|330401089|gb|EGG80683.1| hypothetical protein HMPREF0992_02563 [Lachnospiraceae bacterium 6_1_63FAA] Length = 114 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI GK+IR R GM+QE+L L +T Q + +E+ VN + L+ I + + Sbjct: 7 DITTGKQIRHLRTQSGMTQEELAGKLNVTRQALSNWERDVNEPDLNTLKKICFLFGVHMD 66 Query: 72 FF 73 F Sbjct: 67 DF 68 >gi|206561422|ref|YP_002232187.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198037464|emb|CAR53400.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 75 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 1/74 (1%) Query: 6 KIPNPVDINVGKRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K + G R+R R +SQE + +G + E G +Q I+E Sbjct: 2 KTHTSLRQRFGARVRQLRKEKTDLSQEAFADKVGFARSYFGRVETGKANPSLDAIQTIAE 61 Query: 65 VLESPISFFFDVSP 78 L +S F+ Sbjct: 62 GLGVEVSALFEDDD 75 >gi|118578963|ref|YP_900213.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118501673|gb|ABK98155.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM 2379] Length = 187 Score = 52.1 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 27/66 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R ++ + + + +G + + + E + L I++ + I +FF Sbjct: 6 IGAKIKKLRQEKKLTLQAVAKEIGFSPALISQIENNNVSPPIATLSKIAKFFDVKIGYFF 65 Query: 75 DVSPTV 80 Sbjct: 66 IEDDDE 71 >gi|328956460|ref|YP_004373846.1| hypothetical protein, DUF1700 [Carnobacterium sp. 17-4] gi|328672784|gb|AEB28830.1| hypothetical protein, DUF1700 [Carnobacterium sp. 17-4] Length = 183 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 31/78 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R ++QE + + L +T Q V ++E+ LQ +S + I Sbjct: 1 MSLGHSLKKARAATNLTQEDIAKKLYVTRQTVSRWEQNKTLPNIFVLQELSNLYGLSIDE 60 Query: 73 FFDVSPTVCSDISSEENN 90 + E + Sbjct: 61 LISETKKAVQKKEEEVSM 78 >gi|325689390|gb|EGD31395.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] Length = 205 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R + G+SQE L + LG++ Q V K+E + ++ +S+ E + Sbjct: 1 MNLSDRIQYLRKVRGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFEVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 E++ I++ QL+ F Sbjct: 61 LLKGV-EPVVQKEEEQSIKHRRIASNICYQLSLGF 94 >gi|281491219|ref|YP_003353199.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281374960|gb|ADA64478.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 104 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 33/80 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +++ R ++Q++L + + + + V YE+G L I + L + Sbjct: 5 YLGDKLKASRKSKNLTQKELADKINVKTRTVASYEQGSAYPSIEVLGKICDTLGISSDYL 64 Query: 74 FDVSPTVCSDISSEENNVMD 93 +S ++ ++ M Sbjct: 65 LGISDKTPLEMGGLTDDQMQ 84 >gi|255971922|ref|ZP_05422508.1| predicted protein [Enterococcus faecalis T1] gi|256616820|ref|ZP_05473666.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256763304|ref|ZP_05503884.1| predicted protein [Enterococcus faecalis T3] gi|256957906|ref|ZP_05562077.1| predicted protein [Enterococcus faecalis DS5] gi|257079843|ref|ZP_05574204.1| predicted protein [Enterococcus faecalis JH1] gi|257087648|ref|ZP_05582009.1| predicted protein [Enterococcus faecalis D6] gi|294779495|ref|ZP_06744891.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|300860620|ref|ZP_07106707.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|255962940|gb|EET95416.1| predicted protein [Enterococcus faecalis T1] gi|256596347|gb|EEU15523.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256684555|gb|EEU24250.1| predicted protein [Enterococcus faecalis T3] gi|256948402|gb|EEU65034.1| predicted protein [Enterococcus faecalis DS5] gi|256987873|gb|EEU75175.1| predicted protein [Enterococcus faecalis JH1] gi|256995678|gb|EEU82980.1| predicted protein [Enterococcus faecalis D6] gi|294453452|gb|EFG21858.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|300849659|gb|EFK77409.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|323481602|gb|ADX81041.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 239 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +++RR LG++Q ++ E L +T Q + +E + L +S + E + Sbjct: 1 MNIGNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDR 60 Query: 73 FFDVSPTVCSDISSEENN 90 T+ +S + Sbjct: 61 LLKEDNTMVEKLSKDIRE 78 >gi|225374593|ref|ZP_03751814.1| hypothetical protein ROSEINA2194_00208 [Roseburia inulinivorans DSM 16841] gi|225213545|gb|EEG95899.1| hypothetical protein ROSEINA2194_00208 [Roseburia inulinivorans DSM 16841] Length = 179 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 40/87 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I+ R + G+SQE LG+ GI ++KYE G+ +L I+ L I+ F D Sbjct: 4 GEKIKYFRNMRGISQETLGQLSGINSATIKKYEYGIRNPKPDQLLKIANALGISINIFMD 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 SD+ S + D I Sbjct: 64 FDIETVSDVLSLLFKLDDQIDMKFEAD 90 >gi|182418674|ref|ZP_02949950.1| helix-turn-helix domain protein [Clostridium butyricum 5521] gi|237669723|ref|ZP_04529700.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377451|gb|EDT75006.1| helix-turn-helix domain protein [Clostridium butyricum 5521] gi|237654797|gb|EEP52360.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 171 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG I+ R +SQ+ + + L + YE A L+ I++VL + Sbjct: 7 IKVGNNIKKIRKEKNISQKDMAKKLNMPSSTYSNYENNNREPNALTLKKIADVLSVDVHD 66 Query: 73 FFD 75 + Sbjct: 67 LLN 69 >gi|300721858|ref|YP_003711136.1| NilR transcription factor [Xenorhabdus nematophila ATCC 19061] gi|106635962|gb|ABF82228.1| NilR [Xenorhabdus nematophila] gi|297628353|emb|CBJ88916.1| NilR transcription factor [Xenorhabdus nematophila ATCC 19061] Length = 101 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 43/63 (68%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ VG+RI+ +R L ++ L + +GI+ QQ+ +YE+G NR+ L I+++LE+PI Sbjct: 5 NLLVGQRIQTKRKELSITATALAKQIGISQQQLSRYERGTNRINLDHLVVIADILETPID 64 Query: 72 FFF 74 +FF Sbjct: 65 WFF 67 >gi|15894856|ref|NP_348205.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024531|gb|AAK79545.1|AE007667_10 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325508994|gb|ADZ20630.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 110 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 15/118 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R +QE L E L ++ V K E G ++ L I + L S+ Sbjct: 8 IGDRIRNSRKSKNYTQENLAEYLDVSTVYVSKIECGKTKINLETLMKICKFLNITPSYIL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 S T + E ++ + + I +++ IV+ EKK Sbjct: 68 TGSTTDSENYQKNE---------------ITDMLKTCPPEKIKLISSMIKLIVNFEKK 110 >gi|295398102|ref|ZP_06808151.1| XRE family transcriptional regulator [Aerococcus viridans ATCC 11563] gi|294973621|gb|EFG49399.1| XRE family transcriptional regulator [Aerococcus viridans ATCC 11563] Length = 263 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 1/97 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+RI+ R LGMSQ + + +G T V +E G N R++ I+ + + + Sbjct: 4 NKRLGERIKKIRKKLGMSQLEFSKAIGATKSAVSNWENGYNAPNNERIKAIANLGNTTVD 63 Query: 72 FFFDVS-PTVCSDISSEENNVMDFISTPDGLQLNRYF 107 S ++ + + + L + Sbjct: 64 ALLYGSLNDRVGNLLNAAIDSDNPTYNKKLDDLITDY 100 >gi|225575479|ref|ZP_03784089.1| hypothetical protein RUMHYD_03569 [Blautia hydrogenotrophica DSM 10507] gi|225037331|gb|EEG47577.1| hypothetical protein RUMHYD_03569 [Blautia hydrogenotrophica DSM 10507] Length = 123 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 8/121 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++I+ R I G+SQ LGE GI + KYE G +L I+ L I+ Sbjct: 1 MTVGEKIKTFRTIRGISQNMLGELAGIGGTTILKYELGSQNPKPDQLLKIANALGVSINV 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--------VKVRQKIIELVR 124 D SD+ + + + I + + + D ++ ++ + + Sbjct: 61 LTDFDIETASDVLTLLFKMDEQIDMEIDGEKDTDGNLLPDTICIRFKHPEINNRLAKFAK 120 Query: 125 S 125 + Sbjct: 121 A 121 >gi|70730070|ref|YP_259809.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68344369|gb|AAY91975.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 208 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R G++ +L + +T + + E+ + L +I+ L I +F Sbjct: 28 FLGTRIRGLRKRRGLTLSELAQQSELTAGYISQLERNLAYPSIPALFNIARSLGVTIQWF 87 Query: 74 FDVSPTVCSDI 84 F + Sbjct: 88 FASETQTAPED 98 >gi|116669644|ref|YP_830577.1| XRE family transcriptional regulator [Arthrobacter sp. FB24] gi|116609753|gb|ABK02477.1| transcriptional regulator, XRE family with cupin sensor [Arthrobacter sp. FB24] Length = 199 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 3/104 (2%) Query: 1 MVGNKKIP---NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M P + + VG ++R R GM+ +L + G++ V + E+G+ + Sbjct: 1 MTTETPAPPATSELLATVGNKVRTMRKAKGMTLARLSDITGLSQAIVSQIERGLANPSFT 60 Query: 58 RLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 L ++ L+ P+ FF S + + + T + + Sbjct: 61 TLAQLAHGLDVPVGRFFIGQDESKSPVVRKSDRRNLKNVTRESV 104 >gi|306840350|ref|ZP_07473120.1| Cro/CI family transcriptional regulator [Brucella sp. BO2] gi|306844086|ref|ZP_07476680.1| Cro/CI family transcriptional regulator [Brucella sp. BO1] gi|306275529|gb|EFM57261.1| Cro/CI family transcriptional regulator [Brucella sp. BO1] gi|306289682|gb|EFM60876.1| Cro/CI family transcriptional regulator [Brucella sp. BO2] Length = 470 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 63 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 114 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 115 HQAYRRNSEQL 125 >gi|257467814|ref|ZP_05631910.1| MerR family transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 183 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 39/92 (42%), Gaps = 2/92 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R G+S +L + ++ + + E+G L+ I+ L+ +S+ Sbjct: 4 IGERIKKSRNERGLSLRELASKVDLSASFLSQIEQGKASPSIENLKKIATSLDVKVSYLI 63 Query: 75 DVSPTVC--SDISSEENNVMDFISTPDGLQLN 104 + + +E ++ I + + L Sbjct: 64 EDEEETRNMEVVKKDERKYIESIDSNTKMALL 95 >gi|257416855|ref|ZP_05593849.1| predicted protein [Enterococcus faecalis AR01/DG] gi|257158683|gb|EEU88643.1| predicted protein [Enterococcus faecalis ARO1/DG] Length = 239 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +++RR LG++Q ++ E L +T Q + +E + L +S + E + Sbjct: 1 MNIGNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDR 60 Query: 73 FFDVSPTVCSDISSEENN 90 T+ +S + Sbjct: 61 LLKEDNTMVEKLSKDIRE 78 >gi|168206199|ref|ZP_02632204.1| transcriptional regulator, MerR family [Clostridium perfringens E str. JGS1987] gi|170662344|gb|EDT15027.1| transcriptional regulator, MerR family [Clostridium perfringens E str. JGS1987] Length = 263 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 53/124 (42%), Gaps = 8/124 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG RI+ R +SQ++L G++ + YE + L+ I++ L+ I Sbjct: 1 MNVGDRIKYFRKAENLSQDELASKSGLSRNAISNYELNKRQPNIVVLKKIADALKVDIDD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI---IELVRSIVSS 129 + +D + + + + L+ R ++ ++ + I L++ + + Sbjct: 61 LI-----IKTDSALVSHYKTNLNADFKSLKKYREEKKLSQEQLSYLLDIDINLIKRLENG 115 Query: 130 EKKY 133 E++ Sbjct: 116 EQER 119 >gi|167758401|ref|ZP_02430528.1| hypothetical protein CLOSCI_00741 [Clostridium scindens ATCC 35704] gi|167664298|gb|EDS08428.1| hypothetical protein CLOSCI_00741 [Clostridium scindens ATCC 35704] Length = 179 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 5/102 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R R+ ++QE+L + ++ + + E+ + + L I + L + I+ Sbjct: 1 MEIGPKLRELRIAKNLTQEELADRAELSKGFISQLERDLTSPSIATLVDILQCLGTTINE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 FF P + D+ D LN+ I + + Sbjct: 61 FFSEDPEEQV-----VFHYEDYFEKEDTELLNKTEWIIPNAQ 97 >gi|315612296|ref|ZP_07887210.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315315689|gb|EFU63727.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 167 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + S + D Sbjct: 61 LLLDENSEKSSTAVILEEDKD 81 >gi|312870364|ref|ZP_07730489.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311094065|gb|EFQ52384.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 214 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 30/73 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R +Q+++ LG++ + + +E G + L +S++ + Sbjct: 5 EKIKQYRAHNDWTQQEVATKLGVSRKTISSWENGRSYPDIFMLVQLSDLYHVSLDDLLRE 64 Query: 77 SPTVCSDISSEEN 89 + ++ E Sbjct: 65 DHEMINNYKQEHA 77 >gi|183597672|ref|ZP_02959165.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC 25827] gi|188022942|gb|EDU60982.1| hypothetical protein PROSTU_00963 [Providencia stuartii ATCC 25827] Length = 100 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 41/82 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ VGK IR RR LG+S +L +GI+ QQV +YE+G + L +++ LE+ + Sbjct: 4 VNQIVGKEIRKRRKELGLSGAELAGLVGISQQQVSRYERGECNITLDNLLSLAKALETDL 63 Query: 71 SFFFDVSPTVCSDISSEENNVM 92 FF+ N+ Sbjct: 64 ICFFNDEIFSIEGRVELINDNE 85 >gi|153813857|ref|ZP_01966525.1| hypothetical protein RUMTOR_00063 [Ruminococcus torques ATCC 27756] gi|331088191|ref|ZP_08337110.1| hypothetical protein HMPREF1025_00693 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848253|gb|EDK25171.1| hypothetical protein RUMTOR_00063 [Ruminococcus torques ATCC 27756] gi|330408435|gb|EGG87901.1| hypothetical protein HMPREF1025_00693 [Lachnospiraceae bacterium 3_1_46FAA] Length = 215 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 31/78 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I R G+SQ+ ++ Q + +E G + + +S+ + I Sbjct: 1 MNIGEQINNLRKQHGLSQDDFANLFNVSRQTISNWENGKSYPDLEMIIKVSDYFKISIDE 60 Query: 73 FFDVSPTVCSDISSEENN 90 I +E+ Sbjct: 61 LLKNDVQTVKKIDNEKKA 78 >gi|23502065|ref|NP_698192.1| Cro/CI family transcriptional regulator [Brucella suis 1330] gi|23348021|gb|AAN30107.1| transcriptional regulator, Cro/CI family [Brucella suis 1330] Length = 470 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 63 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 114 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 115 HQAYRRNSEQL 125 >gi|294478947|gb|ADE87512.1| transcriptional regulator [Deep-sea thermophilic phage D6E] Length = 206 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 42/80 (52%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N VG+ I R + G+S E+LG +G+T + +++YE G R+ R+ I+E L+ Sbjct: 2 NDFYKKVGQNIEKYRKMKGLSAEELGNRVGLTKKTIRRYETGEIRIINDRVLAIAEALDV 61 Query: 69 PISFFFDVSPTVCSDISSEE 88 + ++ + V +E+ Sbjct: 62 DPADLYEGTDVVEFTDETEK 81 >gi|300023570|ref|YP_003756181.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299525391|gb|ADJ23860.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 472 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 3/120 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R G++Q L L ++ + + EK + L I+ V + F + Sbjct: 7 GVRLKRLREERGLTQVALARALELSPSYLNQIEKNQRPLTVPILLKINSVFGVDVQLFSE 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL-VRSIVSSEKKYR 134 + + L R + V + I+ L RS +SE+ Sbjct: 67 DEEARLIADLKDVLADP-GLGEHVALTEIREIAA-NMPAVGRAIVALQARSRQASERADA 124 >gi|223986619|ref|ZP_03636613.1| hypothetical protein HOLDEFILI_03935 [Holdemania filiformis DSM 12042] gi|223961414|gb|EEF65932.1| hypothetical protein HOLDEFILI_03935 [Holdemania filiformis DSM 12042] Length = 400 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GKRI R ++Q++L + L +T + + ++E+G + L +++ L Sbjct: 7 GKRIAQLRKARNLTQQQLADQLNVTNRAISRWERGEGYPEITLLPKLADSLGVTTDEIL 65 >gi|21225095|ref|NP_630874.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|256783752|ref|ZP_05522183.1| DNA-binding protein [Streptomyces lividans TK24] gi|289767634|ref|ZP_06527012.1| DNA-binding protein [Streptomyces lividans TK24] gi|6855358|emb|CAB71249.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] gi|289697833|gb|EFD65262.1| DNA-binding protein [Streptomyces lividans TK24] Length = 192 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 3/121 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + +PVD + R+ R G S +L E G++ + + E+ A+ L Sbjct: 1 MREDDVVADPVDARLAARLAELRAERGWSLGELAERSGVSRSTLSRAERAETSPTAAVLN 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + V +S + + + R + +R +++ Sbjct: 61 RLCAVYGRTMSRLLSEVEAEPALLVRAAE---QPVWEDRPAGFVRRSVSPPHPGLRGELV 117 Query: 121 E 121 E Sbjct: 118 E 118 >gi|226362101|ref|YP_002779879.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226240586|dbj|BAH50934.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 186 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 35/75 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +IR R G++ +L + G++ V + E+G+ + L ++ L+ P+ FF Sbjct: 4 VGNKIRTMRKEKGLTLAQLSDITGLSPAIVSQIERGLANPSFTTLAQLAHGLDIPVGRFF 63 Query: 75 DVSPTVCSDISSEEN 89 P S + + Sbjct: 64 IGQPDTTSPVVRKHE 78 >gi|166033118|ref|ZP_02235947.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC 27755] gi|166027475|gb|EDR46232.1| hypothetical protein DORFOR_02840 [Dorea formicigenerans ATCC 27755] Length = 295 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ + +++ R GMSQE+L E LG++ Q V K+E G + IS + + I Sbjct: 1 MDMTFAENVKMLRKQAGMSQEQLAEKLGVSRQAVTKWETGAGIPDIENIMAISMLFDISI 60 Query: 71 SFFFDVSPTVCSDISSE 87 + +E Sbjct: 61 DDLLSNERDSKKVVETE 77 >gi|89891794|ref|ZP_01203296.1| hypothetical transmembrane protein [Flavobacteria bacterium BBFL7] gi|89515949|gb|EAS18614.1| hypothetical transmembrane protein [Flavobacteria bacterium BBFL7] Length = 269 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I R G++QE+L E I + +Q+ E G + +++I L I Sbjct: 5 ELGNYIAQLRKEKGLTQEELVELCNINVRTIQRIENGDVTPRSYTIKNILSALGKSIDDV 64 Query: 74 FDVSPTVCSDISS 86 F +D+ + Sbjct: 65 FKSVEKKAADLPA 77 >gi|331017157|gb|EGH97213.1| XRE family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 115 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 45/118 (38%), Gaps = 12/118 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R++ R LG+SQ + G L ++ + YE G N + + +++ + Sbjct: 7 VGERLKEERERLGLSQTEFGTRLRVSRGTQKNYELGANSLDLRYVAALTDQ-GVDAGYVL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + L ++ ++ ++ + +V+S+ + + Sbjct: 66 TGHRSPAPGQGLNPDE----------ADLVDHYRRLPVDD-QKTVRRIVKSMAAEADE 112 >gi|313122873|ref|YP_004033132.1| peptidase s24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279436|gb|ADQ60155.1| Peptidase S24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 206 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G +I+ +R G++Q++L LG+ V +E+G++ A R+ I++ L+ +S Sbjct: 1 MKIGTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSNPPAKRIPAIADALDISVS 60 Query: 72 FFFDVSPTVCSDISSEENN 90 ++ + Sbjct: 61 ELLGNDDAKPKNLVDLADA 79 >gi|300811613|ref|ZP_07092093.1| putative repressor LexA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497408|gb|EFK32450.1| putative repressor LexA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325685247|gb|EGD27365.1| SOS regulatory protein LexA [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 206 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G +I+ +R G++Q++L LG+ V +E+G++ A R+ I++ L+ +S Sbjct: 1 MKIGTKIKQQRKKKGLTQKELASILGLGGVTTVASWEQGLSNPPAKRIPAIADALDISVS 60 Query: 72 FFFDVSPTVCSDISSEENN 90 ++ + Sbjct: 61 ELLGNDDAKPKNLVDLADA 79 >gi|332798146|ref|YP_004459645.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695881|gb|AEE90338.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 100 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G RI+ R+ G+ +L E +GIT + E G LQ I + L +S Sbjct: 1 MNIGHRIKQIRIAKGLQGIQLAEKVGITNVYLSYLENGTKIPSIETLQKICDALGITLSE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 FF E + + +P L+L F++ Sbjct: 61 FFMDENANLPPEYQELIENVKVL-SPKQLELLNEFLK 96 >gi|324324351|gb|ADY19611.1| XRE family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 120 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 3/119 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ RM +G +Q++ + + I+ V E G + IS + + Sbjct: 5 IGKRIKEIRMSIGYTQQQFADSVDISKPMVSYIESGKKTPSRETVSKISNLANVSTDYIM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 +S ++ SS + +++ + F +KI L+ + + KY Sbjct: 65 GLSDNKTNEKSSASDVMLEL---KYYIDRMETFDDETKEFAIKKIKALISGLDIEDNKY 120 >gi|160913567|ref|ZP_02076257.1| hypothetical protein EUBDOL_00043 [Eubacterium dolichum DSM 3991] gi|158434028|gb|EDP12317.1| hypothetical protein EUBDOL_00043 [Eubacterium dolichum DSM 3991] Length = 227 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 8/90 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ +K +G I R G++QE+LGE LG+T + + K+E G + S + Sbjct: 1 MMDQRK--------IGIFIATCRKEKGLTQEQLGELLGVTNKSISKWENGKSLPDPSLYK 52 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN 90 + ++LE + FD + + + Sbjct: 53 PLCDILEINLIELFDGERIAEDKVVEKADQ 82 >gi|318062605|ref|ZP_07981326.1| helix-turn-helix domain-containing protein [Streptomyces sp. SA3_actG] gi|318080566|ref|ZP_07987898.1| helix-turn-helix domain-containing protein [Streptomyces sp. SA3_actF] Length = 365 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 8/98 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI R+ GMSQ L + + + + E G RV A L +++ L P++ F Sbjct: 6 EIGERIAEARLAAGMSQGDLASKVALDRTAMVRIEAGDRRVSALELSRLAQALGVPVAHF 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P + D + R ++D Sbjct: 66 LSRPPAALVSRRVALEDGSD--------EATRASYRLD 95 >gi|251779221|ref|ZP_04822141.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083536|gb|EES49426.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 94 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+ R G+ QE +G+ L I+ YE G S L +++ + + Sbjct: 1 MLGERLAELRKDKGLKQEDIGKILRISRSTYGNYESGYAEPSVSILIDLAKFYNVSLDYI 60 >gi|291456508|ref|ZP_06595898.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] gi|291381785|gb|EFE89303.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] Length = 161 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ I++ R G++Q + L +T Q + ++EKG ++ IS E P++ Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHKLFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60 Query: 73 FFDVSPTV 80 ++ Sbjct: 61 LMEMPDNG 68 >gi|222530426|ref|YP_002574308.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457273|gb|ACM61535.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 122 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 42/95 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++++ R G++QE++ + LG+ Q+ YE G + LQ ++++ +++ Sbjct: 8 KKIGQKLQEARKKAGLTQEQVADYLGVNKVQLSYYENGAREISIETLQQLADLYGYTLNY 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F D + +S + + L F Sbjct: 68 FLDDEKSTDPAVSFSFRGEELEKEDLEVIALANRF 102 >gi|222530442|ref|YP_002574324.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457289|gb|ACM61551.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 143 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 47/101 (46%), Gaps = 1/101 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK+I R G+++ KL E G++ + + E+G+ + + L++I + L ++ Sbjct: 1 MNIGKKIAELREKYGLTRYKLSELSGVSQSALSEIERGIKQPTITTLENICKALNITLAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 FF N + + +P ++L F++ Sbjct: 61 FFAEKEPEIPPEVKSLINTVVRL-SPTQIRLLDSFLKTFQP 100 >gi|325957710|ref|YP_004293122.1| hypothetical protein LAC30SC_10450 [Lactobacillus acidophilus 30SC] gi|325334275|gb|ADZ08183.1| hypothetical protein LAC30SC_10450 [Lactobacillus acidophilus 30SC] Length = 125 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 46/100 (46%), Gaps = 2/100 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ ++I R SQE+L E L ++ Q V K+E G ++ ++ +S + + + Sbjct: 1 MNLNQKITQLRNDNNWSQEELAEKLNVSRQSVSKWESGQSKPDLDKIVVLSNIFDVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS--TPDGLQLNRYFIQI 110 + S+ S+++++ +S PD + I Sbjct: 61 LLKDNNEKESNSSTKKHHFNFSLSQFNPDIWTIAVAIYII 100 >gi|291518454|emb|CBK73675.1| Predicted transcriptional regulators [Butyrivibrio fibrisolvens 16/4] Length = 196 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 36/92 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R + +Q++L E + ++ Q + +E + + +S + E + Sbjct: 1 MELGKRIKDLRSLHNWNQDELAEKMFVSRQTISNWENEKSYPDIQSILLLSNLFEISLDQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 +I ++++ L Sbjct: 61 LVKGDVEQMQEIINDQDVKQMKFYGKMMLACI 92 >gi|237733315|ref|ZP_04563796.1| predicted protein [Mollicutes bacterium D7] gi|229383696|gb|EEO33787.1| predicted protein [Coprobacillus sp. D7] Length = 138 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 40/77 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R G+SQE+L L I+ Q + K+E +N ++ +++ LE ++ Sbjct: 1 MSLGKRIQSYRKQKGLSQEQLASRLNISRQALSKWESDINVPNIDKIMDVAKALEITLNE 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + + E+ Sbjct: 61 LLGLEEDSNDEYAKLES 77 >gi|84685724|ref|ZP_01013621.1| probable transcriptional regulator [Maritimibacter alkaliphilus HTCC2654] gi|84666390|gb|EAQ12863.1| probable transcriptional regulator [Rhodobacterales bacterium HTCC2654] Length = 201 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 39/105 (37%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +K N V +VG+ IR R M+ +L G + + + E+G L+ +++ Sbjct: 12 EKWGNAVAHHVGEDIRSLRKTRAMTLAQLAGAAGRSVGWLSQVERGRTTPSVRDLEQLAD 71 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +L ISFFF S + D L + Sbjct: 72 LLGVNISFFFRSSRRAPEEQGLVLRAADRPTIGSDESGLVEELLS 116 >gi|327542983|gb|EGF29431.1| transcriptional regulator, XRE family [Rhodopirellula baltica WH47] Length = 232 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 3/131 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R+R R+ GM+ +++ + G T + + E L ++ L S Sbjct: 52 VELAQRLRQLRLDRGMTLDEVAQKSGQTKSWLSRVENFRITPSLPALADLASSLGVSTSS 111 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + I + PD Y+ + R L++ E++ Sbjct: 112 LLEGLDDRPQIICVRHDERKKIQRDPDSS--IEYYSLASERTHRTMDPFLLKIPSGEERE 169 Query: 133 YRTIE-EECMV 142 RT E EE + Sbjct: 170 PRTHEGEEFLT 180 >gi|312867200|ref|ZP_07727410.1| peptidase S24-like protein [Streptococcus parasanguinis F0405] gi|311097329|gb|EFQ55563.1| peptidase S24-like protein [Streptococcus parasanguinis F0405] Length = 225 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 45/120 (37%), Gaps = 25/120 (20%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ RR+ G++Q + E L I+ + +E G+ L+ +++ L +F + Sbjct: 5 KKLKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKEDYFINK 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 Y + ++K+ +L ++ ++K ++ Sbjct: 65 DS-------------------------ALYTYPLLTPPHQKKVDQLASQLLEQQQKVVSL 99 >gi|163795463|ref|ZP_02189430.1| transcriptional regulator, XRE family protein [alpha proteobacterium BAL199] gi|159179449|gb|EDP63980.1| transcriptional regulator, XRE family protein [alpha proteobacterium BAL199] Length = 481 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 43/125 (34%), Gaps = 9/125 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +IR R+ G+SQ ++ +GI+ + E V L + E + F Sbjct: 11 MLGHKIRRFRLDQGLSQTEMAAQIGISPSYLNLIEHNQRPVTVPLLFKLGNAFEIDLKEF 70 Query: 74 FDVSPTVCSDISSEENNVMDF----ISTPDGLQLNRYFIQIDDV-----KVRQKIIELVR 124 + + SE F +S + +L + ++I E + Sbjct: 71 AEDDDQRLAAGLSEVFGDPLFEGQAVSEREMRELVASAPAAAQGVLTLYRAYRRIWENAQ 130 Query: 125 SIVSS 129 ++ Sbjct: 131 ALAHE 135 >gi|23168698|gb|AAN08677.1| transcriptional regulator [Anaplasma marginale str. Florida] Length = 148 Score = 52.1 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 61/140 (43%), Gaps = 20/140 (14%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF---------- 74 + GMS+ + LGITFQQVQKYEKG NR+ SRL ++ VL I Sbjct: 1 MKGMSRNQPASRLGITFQQVQKYEKGTNRIVISRLYELARVLGIEIKDLIAKLQNDLRPI 60 Query: 75 ------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + + SS E + + L L R + +I K+R I LV+ + + Sbjct: 61 TDAGDATDAALREGEESSLEEFGQSYNDGKEVLMLVRAYRRIKSDKMRGAIHTLVKVMCA 120 Query: 129 SEK----KYRTIEEECMVEQ 144 ++ ++ +EE E Sbjct: 121 EQQQDDYEHSDADEELGYEH 140 >gi|254714255|ref|ZP_05176066.1| hypothetical protein BcetM6_13066 [Brucella ceti M644/93/1] gi|254717691|ref|ZP_05179502.1| hypothetical protein BcetM_15065 [Brucella ceti M13/05/1] Length = 470 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 63 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 114 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 115 HQAYRRNSEQL 125 >gi|162454793|ref|YP_001617160.1| putative transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161165375|emb|CAN96680.1| putative transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 357 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R G+S E+L + G++ + + E G + + L I+ L P S Sbjct: 177 VGANLRRLRTKRGLSLERLAKASGVSRAMLSQIELGQSTPTINVLWKIARALGVPFSALI 236 Query: 75 DV 76 Sbjct: 237 SD 238 >gi|17987085|ref|NP_539719.1| MerR family transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|225852683|ref|YP_002732916.1| hypothetical protein BMEA_A1231 [Brucella melitensis ATCC 23457] gi|256044838|ref|ZP_05447742.1| hypothetical protein Bmelb1R_10124 [Brucella melitensis bv. 1 str. Rev.1] gi|256113744|ref|ZP_05454548.1| hypothetical protein Bmelb3E_13308 [Brucella melitensis bv. 3 str. Ether] gi|17982745|gb|AAL51983.1| transcriptional regulator, merr family [Brucella melitensis bv. 1 str. 16M] gi|225641048|gb|ACO00962.1| protein of unknown function DUF955 [Brucella melitensis ATCC 23457] gi|326409205|gb|ADZ66270.1| helix-turn-helix domain-containing protein [Brucella melitensis M28] gi|326538914|gb|ADZ87129.1| conserved hypothetical protein [Brucella melitensis M5-90] Length = 470 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 63 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 114 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 115 HQAYRRNSEQL 125 >gi|134298781|ref|YP_001112277.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051481|gb|ABO49452.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 115 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 5/114 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R +S+E+L + L +++ + KYE + I++ I + Sbjct: 4 GNRLKSLREKNNISREELAKLLDLSYWAISKYENNERIPDHETINKIADYFIVTIDYLLG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S S + P + R + +++I +++++ V Sbjct: 64 RSDNPSPSPKSTIDEEW-----PGVANILRRNGKKLTPADKKRIEKIIKAAVED 112 >gi|296453887|ref|YP_003661030.1| hypothetical protein BLJ_0729 [Bifidobacterium longum subsp. longum JDM301] gi|296183318|gb|ADH00200.1| hypothetical protein BLJ_0729 [Bifidobacterium longum subsp. longum JDM301] Length = 161 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ I++ R G++Q + L +T Q + ++EKG ++ IS E P++ Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAK 60 Query: 73 FFDVSPTV 80 ++ Sbjct: 61 LMEMPDNG 68 >gi|115379556|ref|ZP_01466646.1| transcriptional regulator, XRE family [Stigmatella aurantiaca DW4/3-1] gi|310821728|ref|YP_003954086.1| XRE family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115363441|gb|EAU62586.1| transcriptional regulator, XRE family [Stigmatella aurantiaca DW4/3-1] gi|309394800|gb|ADO72259.1| Transcriptional regulator, XRE family [Stigmatella aurantiaca DW4/3-1] Length = 284 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 6/131 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK +R R+ G+S E+L + G++ + + E G + + L I+ L+ P S Sbjct: 104 VGKNLRRLRIQRGLSLERLSKASGVSRAMLGQIELGQSAPTINVLWKIARALDLPFSALI 163 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 S + + +++ DG +R D+ + R + EL S E+ Sbjct: 164 SNSGGAGTRLMRAPQAKR--LTSHDGRFTSRALFPFDEPR-RVEFYELSLKAHSEERADA 220 Query: 135 TIE---EECMV 142 E +V Sbjct: 221 HPPGTMENLIV 231 >gi|86360646|ref|YP_472534.1| hypothetical protein RHE_PE00372 [Rhizobium etli CFN 42] gi|86284748|gb|ABC93807.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 194 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 37/110 (33%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R+ + +L G++ + K E+G L I+ V + F Sbjct: 14 AIGPRIKALRLRKKLGLVQLAGHTGLSPAMLSKIERGQMFPTLPTLLRIAMVFGVGLDHF 73 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F + + S P + +F +D +++ Sbjct: 74 FKADKEEPLIAIVRKEQRLKLPSPPGEKRPAFFFESLDYPAADRRMEAFY 123 >gi|134300926|ref|YP_001114422.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134053626|gb|ABO51597.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 152 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 16/142 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R G++Q+ L + L I + YE + L+ +++ + + + Sbjct: 6 KRMKELREGKGLTQQALADALNIGKSAIALYETEKRQPDPDTLKKLAQFFNCSVDYLLGL 65 Query: 77 SPTVC------SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE--------L 122 S S + + +VM F+ + +L + I+ K+IE Sbjct: 66 SNECQGTIFVHSALPALPVDVMSFVLDKNNHKLIKVIQSINAQGYSNKVIEEWLLSLSNT 125 Query: 123 VRSIVSSEKKYRTIEEECMVEQ 144 ++ I + R + +V++ Sbjct: 126 LKFIHQDYQVERNP--KLLVQE 145 >gi|163843452|ref|YP_001627856.1| hypothetical protein BSUIS_A1235 [Brucella suis ATCC 23445] gi|254693892|ref|ZP_05155720.1| hypothetical protein Babob3T_04377 [Brucella abortus bv. 3 str. Tulya] gi|254701927|ref|ZP_05163755.1| hypothetical protein Bsuib55_13872 [Brucella suis bv. 5 str. 513] gi|254704472|ref|ZP_05166300.1| hypothetical protein Bsuib36_11190 [Brucella suis bv. 3 str. 686] gi|254706633|ref|ZP_05168461.1| hypothetical protein BpinM_06519 [Brucella pinnipedialis M163/99/10] gi|254710258|ref|ZP_05172069.1| hypothetical protein BpinB_08297 [Brucella pinnipedialis B2/94] gi|256031752|ref|ZP_05445366.1| hypothetical protein BpinM2_14069 [Brucella pinnipedialis M292/94/1] gi|256369612|ref|YP_003107122.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|294852525|ref|ZP_06793198.1| hypothetical protein BAZG_01451 [Brucella sp. NVSL 07-0026] gi|163674175|gb|ABY38286.1| protein of unknown function DUF955 [Brucella suis ATCC 23445] gi|255999774|gb|ACU48173.1| transcriptional regulator, Cro/CI family [Brucella microti CCM 4915] gi|294821114|gb|EFG38113.1| hypothetical protein BAZG_01451 [Brucella sp. NVSL 07-0026] Length = 470 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 63 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 114 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 115 HQAYRRNSEQL 125 >gi|330819769|ref|YP_004348631.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] gi|327371764|gb|AEA63119.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] Length = 189 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 37/94 (39%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D +G RIR R G S L E G++ + K E+G + A+ L ++ Sbjct: 6 DDIDHRIGARIRAERESRGWSLTNLAENSGVSRAMIHKIERGESSPTATSLAKLAGAFNL 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 +S ++ + ++ + ++ Sbjct: 66 SMSALLALAELEDGRLLRVDDQPVWIDPQSGYVR 99 >gi|327183267|gb|AEA31714.1| Cro/CI family transcriptional regulator [Lactobacillus amylovorus GRL 1118] Length = 241 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 12/114 (10%), Positives = 39/114 (34%), Gaps = 2/114 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R++ R + + + + GI YE G Q ++ + + Sbjct: 1 MIKNRLKEMRKKHNFTLDDIQKMTGIKRGTYSNYENGNTEPKIETWQKLANFFGVSVPYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDG--LQLNRYFIQIDDVKVRQKIIELVRS 125 ++ T + + + ++ + R + Q+ + + +K++ + Sbjct: 61 QGITFTKTDILKLLNDTYFNELNNDFDSVVTPVRTYSQLKKIPLPEKVLTKMEQ 114 >gi|332654275|ref|ZP_08420019.1| transcriptional regulator, Cro/CI family [Ruminococcaceae bacterium D16] gi|332517361|gb|EGJ46966.1| transcriptional regulator, Cro/CI family [Ruminococcaceae bacterium D16] Length = 394 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R+R R GM+Q++L + LG++ + V ++E G + L ++ VL + D Sbjct: 8 QRLRQYRKNKGMTQQELADQLGVSNKTVSRWESGSY-PDVTTLVALARVLGVTVDELLD 65 >gi|225376377|ref|ZP_03753598.1| hypothetical protein ROSEINA2194_02018 [Roseburia inulinivorans DSM 16841] gi|225211753|gb|EEG94107.1| hypothetical protein ROSEINA2194_02018 [Roseburia inulinivorans DSM 16841] Length = 380 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 5/113 (4%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 ++K+ + + +I R G SQE+L E LG+T Q + KYE + ++ + Sbjct: 41 KDEKMEEV--MILADKIINLRKKNGWSQEELAEKLGVTRQSISKYEGAQSIPDLDKILKL 98 Query: 63 SEVLESPISFFFDV---SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 SE+ + S E + D +++ ++QI D Sbjct: 99 SEIFGVTTDYLIKDELEEEEYASSQMQENESESDRSVHKVTMEMANEYLQIID 151 >gi|221068872|ref|ZP_03544977.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220713895|gb|EED69263.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 131 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 30/81 (37%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+PN V +G ++R R + SQE+L + ++ K E G L + Sbjct: 18 KLPNAVTKALGTKLRSYRELAQKSQEQLAHEAEVERSRISKLENGHINPSLLTLATLCHC 77 Query: 66 LESPISFFFDVSPTVCSDISS 86 L + F+ S Sbjct: 78 LGITPAELFEGVTATLPPASQ 98 >gi|328887776|emb|CAJ70012.2| Transcriptional regulator, AbrB family [Clostridium difficile] Length = 141 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 29/69 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + ++ R I +QE+L E L ++ Q + K+E G + ++++ + Sbjct: 1 MINENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDICSCIKLAKLYNVKLDDL 60 Query: 74 FDVSPTVCS 82 + S Sbjct: 61 VNHSEEKTG 69 >gi|322412563|gb|EFY03471.1| phage transcriptional repressor [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 248 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 62/129 (48%), Gaps = 14/129 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPIS 71 +++G +++ RR+ + +S E+L + LG++ + +YEKG +V L+ IS++L + + Sbjct: 1 MDIGAKLKQRRLEVNVSVEELAKKLGVSKTTIYRYEKGEILKVPTEVLEKISKILNTNPA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 +F S T + T ++ Q++ + ++K++ + + Sbjct: 61 YFMGWSDTPT------------PVQTQTLQEIIVTSKQLEQPR-QEKVLSFANEQLEEQS 107 Query: 132 KYRTIEEEC 140 K ++ EE Sbjct: 108 KVVSMHEEL 116 >gi|260433557|ref|ZP_05787528.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260417385|gb|EEX10644.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 207 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 2/78 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G + P PVD +G R+R R + E+ G+ + K E G L+ + Sbjct: 17 GTRTEPEPVD--LGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQMSPTYDALKKL 74 Query: 63 SEVLESPISFFFDVSPTV 80 + LE + F Sbjct: 75 ATGLEISVPQLFTPPERD 92 >gi|260168886|ref|ZP_05755697.1| transcriptional regulator, Cro/CI family protein [Brucella sp. F5/99] Length = 470 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 63 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 114 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 115 HQAYRRNSEQL 125 >gi|257054282|ref|YP_003132114.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256584154|gb|ACU95287.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 201 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 6/114 (5%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + N V VG R+R R G++ +L G++ + + E G R L ++ V Sbjct: 3 RDTNDVLAAVGPRLRALRRHRGITLAELATATGVSESTLSRLESGQRRATLELLLPLARV 62 Query: 66 LESPISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 P+ P V +S G + F I + Sbjct: 63 YNVPLDDLVGAPRTGDPRVHLTPIHRFGMTFVPLSRRPGG--VQAFKMIIPARP 114 >gi|228938260|ref|ZP_04100874.1| hypothetical protein bthur0008_9280 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971138|ref|ZP_04131770.1| hypothetical protein bthur0003_9200 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977747|ref|ZP_04138132.1| hypothetical protein bthur0002_9560 [Bacillus thuringiensis Bt407] gi|228781955|gb|EEM30148.1| hypothetical protein bthur0002_9560 [Bacillus thuringiensis Bt407] gi|228788564|gb|EEM36511.1| hypothetical protein bthur0003_9200 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821396|gb|EEM67407.1| hypothetical protein bthur0008_9280 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938767|gb|AEA14663.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 149 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DKELTQKVIEDSKQLAYP 82 >gi|23465550|ref|NP_696153.1| hypothetical protein BL0981 [Bifidobacterium longum NCC2705] gi|239621901|ref|ZP_04664932.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23326214|gb|AAN24789.1| hypothetical protein with helix turn helix motif [Bifidobacterium longum NCC2705] gi|239515092|gb|EEQ54959.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517097|emb|CBK70713.1| Predicted transcriptional regulators [Bifidobacterium longum subsp. longum F8] Length = 277 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ I++ R G++Q + L +T Q + ++EKG ++ IS E P++ Sbjct: 117 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 176 Query: 73 FFDVSPTV 80 ++ Sbjct: 177 LMEMPDNG 184 >gi|258541456|ref|YP_003186889.1| XRE family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632534|dbj|BAH98509.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-01] gi|256635591|dbj|BAI01560.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-03] gi|256638646|dbj|BAI04608.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-07] gi|256641700|dbj|BAI07655.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-22] gi|256644755|dbj|BAI10703.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-26] gi|256647810|dbj|BAI13751.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-32] gi|256650863|dbj|BAI16797.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653854|dbj|BAI19781.1| transcriptional regulator Xre [Acetobacter pasteurianus IFO 3283-12] Length = 471 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 3/123 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R ++Q L + L I+ + + E+ V LQ + E + ++F + Sbjct: 11 GPRLRQLRQRETLTQANLADMLDISPSYLNQLERNHRPVPHPLLQKLCERFDLTPAWFSN 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI-DDVKVRQKIIELVRSIVSSEKKYR 134 E + D + L L + + + + + L R+ +++ Sbjct: 71 TKEAHTVQAMRET--MADPVFKNASLPLAKMADAVHANPDLCAAFLTLYRAYKFEQERES 128 Query: 135 TIE 137 Sbjct: 129 DTL 131 >gi|169633405|ref|YP_001707141.1| putative repressor protein from bacteriophage [Acinetobacter baumannii SDF] gi|169152197|emb|CAP01101.1| putative repressor protein from bacteriophage [Acinetobacter baumannii] Length = 254 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR R ++Q L + +G++ V +EK A L ++ S+ + Sbjct: 8 GQRIRALRREKKLTQGDLAKIVGVSAPNVTGWEKDAYAPKADPLSKMAAYFGVSTSYITN 67 Query: 76 VSPTVCS 82 + Sbjct: 68 GDESGPQ 74 >gi|254251221|ref|ZP_04944539.1| hypothetical protein BDAG_00398 [Burkholderia dolosa AUO158] gi|124893830|gb|EAY67710.1| hypothetical protein BDAG_00398 [Burkholderia dolosa AUO158] Length = 189 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 4/106 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + V +R+R R G+SQ +L + G+T + E+G L+ Sbjct: 1 MSETESM----STEVAERLRFVRNKHGLSQRELAKRAGVTNGAISLIEQGRVSPSVGSLK 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + E + ++ FF + S + + + + L Sbjct: 57 KLLECIPMSLAEFFTFELVESRTVVSRRDEMPNLGNDALAFHLVGA 102 >gi|260585081|ref|ZP_05852823.1| transcriptional regulator, Cro/CI family [Granulicatella elegans ATCC 700633] gi|260157277|gb|EEW92351.1| transcriptional regulator, Cro/CI family [Granulicatella elegans ATCC 700633] Length = 180 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++ R+ G++QE+L E ++ + + E ++ I EVL Sbjct: 1 MEIGSHLKALRVQKGLTQEELAERTDLSKGYISQLENDLSSPSMDTFFDILEVLGCAPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FF+ P + E+ Sbjct: 61 FFEDGPEEALTVYGPEDM 78 >gi|319935739|ref|ZP_08010169.1| hypothetical protein HMPREF9488_01000 [Coprobacillus sp. 29_1] gi|319809288|gb|EFW05729.1| hypothetical protein HMPREF9488_01000 [Coprobacillus sp. 29_1] Length = 154 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 10/81 (12%), Positives = 33/81 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+++ R G SQ+++ + + +T Q + +E + + ++ + + Sbjct: 1 MLGEKLMRLRKKHGYSQQEVADLISVTRQTISNWESDQGIPTLDKARMLANLYNVSLDDL 60 Query: 74 FDVSPTVCSDISSEENNVMDF 94 + V ++++ F Sbjct: 61 TENDVEVIIKEKAKKDLHALF 81 >gi|302388655|ref|YP_003824476.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302199283|gb|ADL06853.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 257 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 2/119 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG +I+ R G++Q +L + G++ + + E G L+ I+ L +F Sbjct: 139 HVGYKIKKIRQERGLTQVELAKKAGVSTGLIGQIESGRVEPSLKTLEKIAHALSLSPCYF 198 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV--KVRQKIIELVRSIVSSE 130 + S + + + P + K I+L + S++ Sbjct: 199 VTDDDEIASLLRPMNPELKRLLVDPKVRSFLEMVADCTPEEFEFIMKFIQLYKEHRSAD 257 Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IR R MS ++L ++ + + E+G+ + ++ ++ L + F Sbjct: 4 GKLIRNIRRKRNMSLQELARRADLSVSYLSEIERGIKQPSLETIEKMANALNISKNALFG 63 Query: 76 VSPTVCSDISS 86 PT + S Sbjct: 64 AEPTENRNSRS 74 Score = 37.5 bits (85), Expect = 0.62, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I L R G+S +L E GI+ + + EKG S L+ ++E L Sbjct: 75 IGEKIALLRQEKGISLSELAEKAGISATYLCQIEKGNALPSLSTLKALAEALCMTAQDLM 134 >gi|228474153|ref|ZP_04058890.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] gi|228271848|gb|EEK13185.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] Length = 191 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R SQE L E L ++ Q + +E + L + E+ + + Sbjct: 1 MNIGQQIRKYRERDEYSQEYLAEKLYVSRQTISNWENEKSYPDIHNLLVMCELFDISLDD 60 Query: 73 FFDVS 77 Sbjct: 61 LVRGD 65 >gi|227889182|ref|ZP_04006987.1| transcriptional regulator [Lactobacillus johnsonii ATCC 33200] gi|227850411|gb|EEJ60497.1| transcriptional regulator [Lactobacillus johnsonii ATCC 33200] Length = 161 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R ++QE++ + L +T Q + +EK N + I++ + Sbjct: 5 EQIKRLRKESNLTQEEMAKKLNVTRQAIFNWEKNRNPPDFEMIILIAKTFGVSLDELILG 64 Query: 77 SP 78 Sbjct: 65 DK 66 >gi|148560660|ref|YP_001259108.1| hypothetical protein BOV_1147 [Brucella ovis ATCC 25840] gi|148371917|gb|ABQ61896.1| conserved hypothetical protein [Brucella ovis ATCC 25840] Length = 472 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 65 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 116 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 117 HQAYRRNSEQL 127 >gi|257870456|ref|ZP_05650109.1| predicted protein [Enterococcus gallinarum EG2] gi|257804620|gb|EEV33442.1| predicted protein [Enterococcus gallinarum EG2] Length = 207 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 30/68 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I+ R M+Q+++ L +T Q + K+E+ ++ L +S++ Sbjct: 2 VEIGENIKKLRKAKRMTQKEVANQLNVTPQTISKWERNISYPDLDMLVKLSQLFHISTDA 61 Query: 73 FFDVSPTV 80 + Sbjct: 62 LLGNTKPT 69 >gi|256159923|ref|ZP_05457641.1| hypothetical protein BcetM4_13064 [Brucella ceti M490/95/1] gi|256255153|ref|ZP_05460689.1| hypothetical protein BcetB_12846 [Brucella ceti B1/94] Length = 470 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 63 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 114 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 115 HQAYRRNSEQL 125 >gi|255262604|ref|ZP_05341946.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] gi|255104939|gb|EET47613.1| transcriptional regulator, XRE family [Thalassiobium sp. R2A62] Length = 225 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N + + +N+G+R+R R + E+ + G+ + K E G L+ + Sbjct: 33 ENGENADATPVNLGERVRELRKARSWTLEQAAQKAGLARSTLSKIENGQMSPTYDALKKL 92 Query: 63 SEVLESPISFFFD 75 + L + F Sbjct: 93 AVGLAISVPQLFT 105 >gi|229819917|ref|YP_002881443.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565830|gb|ACQ79681.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 195 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 31/81 (38%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +G P VG R+R R G++ +L E GI+ + + E G + L Sbjct: 1 MGRVSDPAEPLSAVGPRLRALRHERGLTLSELAERTGISTSTLSRLESGGRKPTLELLLP 60 Query: 62 ISEVLESPISFFFDVSPTVCS 82 ++ V P+ PT Sbjct: 61 LARVHGVPLDDLVGAPPTGDP 81 >gi|228952477|ref|ZP_04114558.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807214|gb|EEM53752.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 114 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 6/112 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R +SQ++L E L + + YE I+ VL I + Sbjct: 2 VTLGERIKSIRTKKNISQKELAEALNVNRSAISLYETNRKSPSRENTYKIATVLGVSIDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + + + + Q + + I +L++ Sbjct: 62 LLGMQTDLSLETEKINSETAHLMKR------LDNMPQETKQNIIKLIDDLIK 107 >gi|229015370|ref|ZP_04172387.1| hypothetical protein bmyco0001_57050 [Bacillus mycoides DSM 2048] gi|228745926|gb|EEL95912.1| hypothetical protein bmyco0001_57050 [Bacillus mycoides DSM 2048] Length = 240 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 38/83 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I+ R+I M+QE + L I+ Q + K+E G + + L +S + I Sbjct: 20 MDIGKKIKHLRLINNMTQEDVASQLFISRQVISKWELGKSLPDLTNLLALSNLFNVSIDS 79 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 + S I + N + Sbjct: 80 LLKEDSNLQSQIIKQSNYKRYLL 102 >gi|221195204|ref|ZP_03568260.1| transcriptional regulator, xre family [Atopobium rimae ATCC 49626] gi|221185107|gb|EEE17498.1| transcriptional regulator, xre family [Atopobium rimae ATCC 49626] Length = 236 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 1/98 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK ++ R G++QE+L E +G+T + V ++E G N L +S+ + Sbjct: 4 VKIGKVLQELRKEKGLTQEQLAEQMGVTRRTVSRWETGSNMPDLDILMELSDFYAVDLRE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 T + E + ++ + R ++ Sbjct: 64 ILCGERTREH-MDKELRETILEVADYSNDEKERLLQRL 100 >gi|182677050|ref|YP_001831196.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182632933|gb|ACB93707.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 488 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 36/112 (32%), Gaps = 1/112 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R ++Q ++ E L ++ + E+ + L +++V F Sbjct: 21 GPRLKRLRRERQITQARMAEELNVSPSYLNLMERNQRPITVQVLIRLTDVYGVDPRDFLS 80 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 V + F P + + + ++ L R+ Sbjct: 81 VEAEQSLGEMDQILADPLFREVPIPRAEMQDAAEHA-PAMLSALVRLYRAYS 131 >gi|169350968|ref|ZP_02867906.1| hypothetical protein CLOSPI_01745 [Clostridium spiroforme DSM 1552] gi|169292030|gb|EDS74163.1| hypothetical protein CLOSPI_01745 [Clostridium spiroforme DSM 1552] Length = 335 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 4/101 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ + +I R G SQE+L + L +T Q + K+E + ++ +SE+ Sbjct: 13 MNVILADKIIELRKKNGWSQEQLAQKLNVTRQSISKWEGEQSVPDLQKIILLSEIFGVTT 72 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + N +D L + F+ I Sbjct: 73 DYLIKD----EIEEEEFLNEDVDLKVRKVTLTEAKEFLNIK 109 >gi|169333918|ref|ZP_02861111.1| hypothetical protein ANASTE_00304 [Anaerofustis stercorihominis DSM 17244] gi|169259483|gb|EDS73449.1| hypothetical protein ANASTE_00304 [Anaerofustis stercorihominis DSM 17244] Length = 155 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 4/128 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G++I R + ++Q++L E L ++ Q + K+E + A +L+ +++ L I + Sbjct: 12 GEKIAKARKNISLTQDQLAEVLDVSRQTISKWESDIAYPEAGKLKLLADTLNVSIDYLLK 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 D + +N + + LN+Y +ID L++ + KKY Sbjct: 72 DEVEETKIPEMKQTSNGYEVDWSKLYPILNKYDKEIDMDYYFDIFGNLIK---EAMKKYN 128 Query: 135 TIEEECMV 142 E+ M+ Sbjct: 129 YSLEDAML 136 >gi|187477795|ref|YP_785819.1| phage repressor [Bordetella avium 197N] gi|115422381|emb|CAJ48906.1| Putative phage repressor [Bordetella avium 197N] Length = 360 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 50/116 (43%), Gaps = 3/116 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +RI+ R +S E+L E +G+++Q VQ++E G +RL+ +++ L + + + Sbjct: 30 IHQRIKQLREQRQLSMEQLAELVGVSWQTVQQWENGKTAPKRARLEAVAKALMTTVEYLA 89 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + SS + + R + ++ + L ++ E Sbjct: 90 MGASSEGRVDSSISDARAPWPFQSIPEDKVRA---LSPTQLSKLEGALALALGQME 142 >gi|326383144|ref|ZP_08204833.1| hypothetical protein SCNU_09406 [Gordonia neofelifaecis NRRL B-59395] gi|326198280|gb|EGD55465.1| hypothetical protein SCNU_09406 [Gordonia neofelifaecis NRRL B-59395] Length = 469 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 6/128 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG RIR R +SQ+ L LGI+ + + E + L I+E+ I F Sbjct: 1 MFVGGRIRGLRADRALSQQALAAMLGISASYLNQIEHDNRPLTGPVLAKITEMFGLDIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F E D P + + + ++V ++ Sbjct: 61 FDPQDDVRLVAELREALLDEDLDFDPAASDAGEVASMVGSHR------AIAEALVGMYQR 114 Query: 133 YRTIEEEC 140 YR + E+ Sbjct: 115 YRVVSEQL 122 >gi|306843020|ref|ZP_07475647.1| Cro/CI family transcriptional regulator [Brucella sp. BO2] gi|306286812|gb|EFM58353.1| Cro/CI family transcriptional regulator [Brucella sp. BO2] Length = 470 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 8/137 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K I G RIR R ++Q + E LGI+ + E+ + L Sbjct: 1 MSERK------IFAGPRIRRIRNERSLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLK 54 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ V + + S + + + ++ + P +L + V I++ Sbjct: 55 LASVYKLDLDSLQAESGSTVTGLKEVFSDPLLTGELPGDQELVEIGEAAPNAAV--GIMK 112 Query: 122 LVRSIVSSEKKYRTIEE 138 L R+ +++ + + Sbjct: 113 LYRAYREQQQRLSDLSK 129 >gi|254773353|ref|ZP_05214869.1| hypothetical protein MaviaA2_01546 [Mycobacterium avium subsp. avium ATCC 25291] Length = 477 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 6/121 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L LG++ V + E + L ++E + P +F Sbjct: 10 GARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLTLTERFDLPTQYFAP 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S E + +L I Q ++ L R + + Sbjct: 70 DSDARLIADLREVLA-ETPATPGQVEELVARMPAIG-----QTLVNLHRRLHDTTADLEA 123 Query: 136 I 136 + Sbjct: 124 L 124 >gi|240143885|ref|ZP_04742486.1| DNA-binding protein [Roseburia intestinalis L1-82] gi|257204077|gb|EEV02362.1| DNA-binding protein [Roseburia intestinalis L1-82] Length = 298 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 39/78 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I +R LGM+Q++L E LG + + V K+E+G+ S + E+L ++ Sbjct: 4 VKIGSYIAEKRKKLGMTQKQLAEKLGKSDKSVSKWERGICLPDVSVYLELCEILGISLNE 63 Query: 73 FFDVSPTVCSDISSEENN 90 F +++ + + Sbjct: 64 FLAGEDIEVTNVEKKSED 81 >gi|212711722|ref|ZP_03319850.1| hypothetical protein PROVALCAL_02797 [Providencia alcalifaciens DSM 30120] gi|212685824|gb|EEB45352.1| hypothetical protein PROVALCAL_02797 [Providencia alcalifaciens DSM 30120] Length = 94 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 2/89 (2%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N+K P V VG++I+ R G + +L I+ QQ+ +YE+GVNR+ L ++ Sbjct: 2 NRKFP--VAYAVGQKIKSLRKSQGYTVFQLARECNISEQQLFRYERGVNRIDIDCLARVT 59 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVM 92 ++L+ IS F DI E N Sbjct: 60 KILDVNISDIFCDIFQDNQDIKYENKNQE 88 >gi|41406396|ref|NP_959232.1| hypothetical protein MAP0298 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41394745|gb|AAS02615.1| hypothetical protein MAP_0298 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 502 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 6/121 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L LG++ V + E + L ++E + P +F Sbjct: 35 GARLRRLREEQGLTQVALARALGLSTSYVNQLENDQRPITVPVLLTLTERFDLPTQYFAP 94 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S E + +L I Q ++ L R + + Sbjct: 95 DSDARLIADLREVLA-ETPATPGQVEELVARMPAIG-----QTLVNLHRRLHDTTADLEA 148 Query: 136 I 136 + Sbjct: 149 L 149 >gi|239637276|ref|ZP_04678263.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri L37603] gi|239597113|gb|EEQ79623.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri L37603] Length = 189 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ +I+L R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNISHQIKLCRENKGYSQEYLAEKLYVSRQTISNWENERSYPDVHNLIMMCELFNVSLDD 60 Query: 73 FFDVS 77 Sbjct: 61 LVQGE 65 >gi|161619141|ref|YP_001593028.1| hypothetical protein BCAN_A1208 [Brucella canis ATCC 23365] gi|161335952|gb|ABX62257.1| protein of unknown function DUF955 [Brucella canis ATCC 23365] Length = 470 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 63 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 114 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 115 HQAYRRNSEQL 125 >gi|50914083|ref|YP_060055.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] gi|50903157|gb|AAT86872.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] Length = 281 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 54/138 (39%), Gaps = 12/138 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +V +K+ N D I+ R ++Q++L + L I + +E G N+ ++ Sbjct: 29 IVKEQKMANLSD-----NIKYFRKQNKLTQKELAKKLKIAPTAISAWEVGRNKPLMDNIE 83 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ + P S + +S E P LQ + + ++ Sbjct: 84 QMTSIFGIPKSKLLGDEIYKIQETASPELI-------PSTLQKITATSSQLEHSRQLIVL 136 Query: 121 ELVRSIVSSEKKYRTIEE 138 + ++++ +K+ + E+ Sbjct: 137 DTAETLLNQQKEIKNNED 154 >gi|71908183|ref|YP_285770.1| helix-hairpin-helix DNA-binding motif-containing protein [Dechloromonas aromatica RCB] gi|71847804|gb|AAZ47300.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB] Length = 120 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 1/96 (1%) Query: 1 MVGNKKIPNP-VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+ KK + + ++G + RR LG +QE + E +G+ + V + E+G + L Sbjct: 1 MMAVKKKDSAGLAKHLGGNLCERRKQLGWTQEIVAERVGVDVETVSRIERGAHLPSLPTL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFI 95 ++ L + ++ + + + Sbjct: 61 DRLAVALRCSAGDLLSKEGPAEASEAATFSAWISEL 96 >gi|29375989|ref|NP_815143.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29343451|gb|AAO81213.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 107 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 1/103 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R ++Q + LG+ YE+G I++ + + Sbjct: 3 GTRLTELRKQKKLTQTDVANALGVARTTYSSYEQGRRTPDIDIQNKIADYFNVSLDYLHG 62 Query: 76 VSPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDDVKVRQ 117 + +S ++ V I ++N ID +K R Sbjct: 63 RESFEDTSLSKKQLTVAAHIDDNVSDTEMNEILSFIDYIKKRD 105 >gi|227486708|ref|ZP_03917024.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227235296|gb|EEI85311.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 134 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R+ ++QE++ E L ++ Q + +E + +S++ + + Sbjct: 1 MKIGDKLKNARLHKKLTQEEVAEKLFVSRQSISNWENNKTYPDIGNVIALSDLYQISLDE 60 Query: 73 FFDVSPTVCSDISSEEN 89 S + + Sbjct: 61 LLKGSDNFMKHLEESTD 77 >gi|220923328|ref|YP_002498630.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219947935|gb|ACL58327.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 183 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R+ G+SQ L + G+ + E G L+ I + + ++ FF Sbjct: 6 VGARLRYVRLRHGLSQRALAKKAGVVNSTISLIESGKANPSVGALKRILDAVPIGLAEFF 65 Query: 75 DVSPTVCSDISSEENNVMDF 94 ++P +++ Sbjct: 66 SLTPDRSEKAFYASEELVEI 85 >gi|83749268|ref|ZP_00946267.1| Hypothetical Protein RRSL_00891 [Ralstonia solanacearum UW551] gi|207725182|ref|YP_002255578.1| hypothetical protein RSMK00071 [Ralstonia solanacearum MolK2] gi|207743555|ref|YP_002259947.1| hypothetical protein RSIPO_01735 [Ralstonia solanacearum IPO1609] gi|83724049|gb|EAP71228.1| Hypothetical Protein RRSL_00891 [Ralstonia solanacearum UW551] gi|206590416|emb|CAQ37378.1| hypothetical protein RSMK00071 [Ralstonia solanacearum MolK2] gi|206594954|emb|CAQ61881.1| hypothetical protein RSIPO_01735 [Ralstonia solanacearum IPO1609] Length = 113 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+ + +GKR++ R SQE L + + E+G+ L +I L Sbjct: 17 PAPISVALGKRVKQCRHAADKSQETLAFEALVDRTYISSIERGIANPSVETLANICHCLG 76 Query: 68 SPISFFF 74 +S F Sbjct: 77 VTLSELF 83 >gi|323486025|ref|ZP_08091356.1| transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323400592|gb|EGA92959.1| transcriptional regulator [Clostridium symbiosum WAL-14163] Length = 216 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 44/104 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I+ R G++Q +LG+ LG+ Q + +E V+ + L +S++ ++ +D Sbjct: 5 GNIIKQLRKEAGLTQGELGKKLGVVKQTISSWENNVSEPNSETLSELSKLFGVSVAQLYD 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + + + + ++ ++ + + Q++ Sbjct: 65 HGVPNIDYANFKMDTPEFVLDFKMRIRDLMEEQKMSEDEFAQRV 108 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 24/71 (33%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR MS+++ + +G ++ Y G L I+ L + ++S Sbjct: 89 RIRDLMEEQKMSEDEFAQRVGFHKEEKDAYLYGNKMPSIEDLIKIAGALNVSTDYLLNIS 148 Query: 78 PTVCSDISSEE 88 E Sbjct: 149 SRKRISSQEES 159 >gi|169335433|ref|ZP_02862626.1| hypothetical protein ANASTE_01846 [Anaerofustis stercorihominis DSM 17244] gi|169258171|gb|EDS72137.1| hypothetical protein ANASTE_01846 [Anaerofustis stercorihominis DSM 17244] Length = 275 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 39/77 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G I R ++Q++L + L IT + + K+E+G++ S L +S++L+ + Sbjct: 4 KKIGTFICSLRKEKNLTQKELADKLNITNKAISKWERGISCPDISLLIPLSDILDVTTNE 63 Query: 73 FFDVSPTVCSDISSEEN 89 + SDI+ + + Sbjct: 64 ILNGEREEISDINEDID 80 >gi|73540702|ref|YP_295222.1| helix-hairpin-helix DNA-binding motif-containing protein [Ralstonia eutropha JMP134] gi|72118115|gb|AAZ60378.1| Helix-turn-helix motif [Ralstonia eutropha JMP134] Length = 129 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 2/117 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G + R G SQE L G+ + E+G + + +++ L P S Sbjct: 7 REFGLHLARLRKRRGWSQETLSLESGLARSYLSGIERGKRNLALLNICMLADTLGVPPSE 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL-NRYFIQIDDVKVRQKIIELVRSIVS 128 D S + EE + + ++ R+ ++ + +V + +VR++ Sbjct: 67 MLDFEIQGSSALHVEEPRSVFGNAQNAAIEATLRHMAELSEAEV-DLVAAMVRALAR 122 >gi|329116759|ref|ZP_08245476.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907164|gb|EGE54078.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 113 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 39/104 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++Q K+ + L IT Q ++E G +L I++ + + Sbjct: 6 RLKELRQQKNLTQAKVADSLEITQQSYARWENGKVTPTPEKLSKIAKFYGVTTDYLLEGQ 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + E M + + I+ +K R+K+ + Sbjct: 66 KDDIDLSNVEVLFRMTSDGLTEEEKAIFRDELIEFMKERKKLFD 109 >gi|313889294|ref|ZP_07822945.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313122342|gb|EFR45430.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 367 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I +R G++QE+L E + +T V K+E G + L ++ + Sbjct: 4 IGENILQKRKERGITQEELAEFMMVTKASVSKWETGQSHPDILLLPKLATFFNISVDELI 63 Query: 75 DVSPTVCS 82 P + S Sbjct: 64 GYDPDLSS 71 >gi|312144436|ref|YP_003995882.1| Cupin 2 conserved barrel domain protein [Halanaerobium sp. 'sapolanicus'] gi|311905087|gb|ADQ15528.1| Cupin 2 conserved barrel domain protein [Halanaerobium sp. 'sapolanicus'] Length = 178 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 43/91 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RIR +R MS + + + T + + E+G+ + L+ I+ LE PI +F Sbjct: 1 MLGQRIRNKRKSKSMSLNDVAQKINKTSSYLSQVERGLAEPSITALREIARALEVPIFYF 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + + E+ +++F + +L Sbjct: 61 LIEEESHNAVVRKEQRRILNFPGSHLTFELL 91 >gi|228951504|ref|ZP_04113610.1| hypothetical protein bthur0006_9230 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808211|gb|EEM54724.1| hypothetical protein bthur0006_9230 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 149 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 31/78 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYLSIEIIIHLSDLFGITIDELLRG 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|199597306|ref|ZP_03210737.1| Double-stranded beta-helix related protein [Lactobacillus rhamnosus HN001] gi|229551815|ref|ZP_04440540.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258507963|ref|YP_003170714.1| spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus GG] gi|258539216|ref|YP_003173715.1| spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|199591822|gb|EDY99897.1| Double-stranded beta-helix related protein [Lactobacillus rhamnosus HN001] gi|229314759|gb|EEN80732.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257147890|emb|CAR86863.1| Spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus GG] gi|257150892|emb|CAR89864.1| Spermidine/putrescine transport operon transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|259649290|dbj|BAI41452.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 179 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +IR R+ ++QE+LGE ++ + + E + I VL + Sbjct: 1 MDIGSKIRDLRIRKNLTQEELGERTDLSKGYISQVEHDQSSPSLETFFDILSVLGESPAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF + ++ + ++ G QL Sbjct: 61 FF--REEPVDSLVYHASDQVTYLDEDKGYQL 89 >gi|331002934|ref|ZP_08326447.1| hypothetical protein HMPREF0491_01309 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413227|gb|EGG92601.1| hypothetical protein HMPREF0491_01309 [Lachnospiraceae oral taxon 107 str. F0167] Length = 177 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R++ G++QE+L + ++ + + E + + L I + L I Sbjct: 1 MEIGSKLKRLRVLAGLTQEELADRAELSKGFISQLENDITSPSIATLLDILQCLGVEIKD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 FFD + E+ + + + ++ I + + I++++ Sbjct: 61 FFDEETETQVVFTEEDYFIKE---DKELNNTIKWIIPNAQKNMMEPILQIIE 109 >gi|314935191|ref|ZP_07842544.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] gi|313656526|gb|EFS20265.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] Length = 191 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 32/83 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R SQE L E L ++ Q + +E + L + E+ + + Sbjct: 1 MNIGQQIRKYRERDEYSQEYLAEKLYVSRQTISNWENEKSYPDIHNLLVMCELFDISLDD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 S + + + Sbjct: 61 LVRGDLNSNKQESIKRKMNIWSL 83 >gi|313673082|ref|YP_004051193.1| transcriptional regulator, merr family [Calditerrivibrio nitroreducens DSM 19672] gi|312939838|gb|ADR19030.1| transcriptional regulator, MerR family [Calditerrivibrio nitroreducens DSM 19672] Length = 178 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++IR R LGM+ E + G T + + E G N + L+ I + IS F+ Sbjct: 4 GEKIRDIRKRLGMTLEDVSLKTGFTKSFISQIENGKNSPSIASLKKICYAIGISISELFE 63 Query: 76 VS 77 Sbjct: 64 DE 65 >gi|256372684|ref|YP_003110508.1| transcriptional regulator of molybdate metabolism, XRE family [Acidimicrobium ferrooxidans DSM 10331] gi|256009268|gb|ACU54835.1| transcriptional regulator of molybdate metabolism, XRE family [Acidimicrobium ferrooxidans DSM 10331] Length = 352 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 4/91 (4%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 R R + G+SQ+++ + LGI+ Q V E G ++ + FD S Sbjct: 6 RRLRRVRGLSQQQVADALGISRQAVAGIESGAFEPSLPVAMALARFFGVSVEELFDTSGA 65 Query: 80 VCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 E ++ + + +++ R ++ Sbjct: 66 GR----EEAIELVGPAAVGERIEVARVADRL 92 >gi|319791791|ref|YP_004153431.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315594254|gb|ADU35320.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 206 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Query: 1 MVGNKKIP--NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M + P ++ + +R+R R +S + L G++ + E+G + A Sbjct: 7 MTESTPAPATTSLNDRIAQRVRDLRASRSLSLDALATHCGVSRSMISLIERGESSPTAVL 66 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 L+ ++ L P++ FD + V S +S + + Sbjct: 67 LEKLATGLGVPLASLFDDAEPVASPVSRLADQLQW 101 >gi|291540762|emb|CBL13873.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 111 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 46/113 (40%), Gaps = 6/113 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +G+SQ+ L + L ++ Q + KYE N L+ ++++ + + + Sbjct: 2 NRLKDLRREMGLSQQALADKLNVSQQTICKYENNTNEPNIDMLEAMADIFDVSVDYLIGY 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S + + V + D L + + I + R + + + + Sbjct: 62 S-----SYAHKVEEVSETALNEDELSFLKKYRSI-NPSSRALVQQFMDEFLRL 108 >gi|300024182|ref|YP_003756793.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526003|gb|ADJ24472.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 213 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 5/126 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG+ +R R G+S E+L G++ + + E G + + L I+E L+ + Sbjct: 24 IIVGENLRHLRRKSGLSLEQLAAKSGVSRAMLGQIETGKSAPTINLLGRIAEALQVSVPS 83 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 S + +++ +G R D + + I E+ +I++ + Sbjct: 84 LI--SHPAAGGTVIVPRDRATVLASSNGGFTCRALFPWGDPQSIE-IYEV--TIIAHHSE 138 Query: 133 YRTIEE 138 E Sbjct: 139 DVAAFE 144 >gi|283797098|ref|ZP_06346251.1| putative toxin-antitoxin system, toxin component [Clostridium sp. M62/1] gi|291075515|gb|EFE12879.1| putative toxin-antitoxin system, toxin component [Clostridium sp. M62/1] Length = 111 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 1/104 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +I +G RIR R LG S+E L E + + E G A L + L Sbjct: 1 MKKQFNIEIGGRIRKCREALGYSRETLAEKADLASSFLGTIELGSGSFTAESLVKLCHAL 60 Query: 67 ESPISF-FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + F + + +D P ++ R +I+ Sbjct: 61 GVSADYILFGKEEHGDLSTVNAMLSGLDPEYLPYVEEMLRSYIK 104 >gi|240144293|ref|ZP_04742894.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257203709|gb|EEV01994.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 111 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 6/113 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R+ +G+SQ+ L + L ++ Q + KYE N L+ ++++ + + + Sbjct: 2 NRLKDLRLKMGLSQQALADKLNVSQQTICKYENNTNEPNIDMLEAMADIFDVSVDYLIGY 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S + + V + D L + + I + R + + + + Sbjct: 62 S-----SCAHKVEEVSETALNEDELAFLKKYRSI-NPSSRALVQQFMDEFLRL 108 >gi|218896089|ref|YP_002444500.1| hypothetical protein BCG9842_B4236 [Bacillus cereus G9842] gi|228964096|ref|ZP_04125221.1| hypothetical protein bthur0004_9510 [Bacillus thuringiensis serovar sotto str. T04001] gi|218544124|gb|ACK96518.1| hypothetical protein BCG9842_B4236 [Bacillus cereus G9842] gi|228795583|gb|EEM43065.1| hypothetical protein bthur0004_9510 [Bacillus thuringiensis serovar sotto str. T04001] Length = 149 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 31/78 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ + I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKKLAYP 82 >gi|163814918|ref|ZP_02206306.1| hypothetical protein COPEUT_01069 [Coprococcus eutactus ATCC 27759] gi|158449857|gb|EDP26852.1| hypothetical protein COPEUT_01069 [Coprococcus eutactus ATCC 27759] Length = 159 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 4/112 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R +SQE+L E L ++ Q + K+E +RL +S+ + + + Sbjct: 17 GERLYELRNKNNLSQEELAEVLDVSRQSISKWENDKAYPEMTRLLFMSDYFDVSLDYLMR 76 Query: 76 V----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + D T + L + F+ + + L Sbjct: 77 GIKKENNEEKVTADDADKISNDKYKTKNILLVWNNFLSNLSPNQKTLFMLLY 128 >gi|116249086|ref|YP_764927.1| putative aldehyde dehydrogenase-like protein [Rhizobium leguminosarum bv. viciae 3841] gi|115253736|emb|CAK12129.1| putative aldehyde dehydrogenase-like protein [Rhizobium leguminosarum bv. viciae 3841] Length = 182 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 34/84 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + + + Sbjct: 1 MSVDIGSRLRYLRIANKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF P +++ Sbjct: 61 AEFFAFEPERPRKAFYAAEELVEI 84 >gi|55822658|ref|YP_141099.1| restriction-modification system regulatory protein [Streptococcus thermophilus CNRZ1066] gi|55738643|gb|AAV62284.1| restriction-modification system regulatory protein, putative [Streptococcus thermophilus CNRZ1066] Length = 75 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + GKRI+ R G+SQEK +G+ E G V ++ I+ + I Sbjct: 2 IQVAFGKRIKELRKQTGLSQEKFALKIGMDRTYYASIESGKRNVSLKNIEKIASGFDISI 61 Query: 71 SFFF 74 S F Sbjct: 62 SQLF 65 >gi|325261368|ref|ZP_08128106.1| DNA-binding protein [Clostridium sp. D5] gi|324032822|gb|EGB94099.1| DNA-binding protein [Clostridium sp. D5] Length = 182 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R MSQE+L LG++ Q V K+E + + ++LE + + Sbjct: 1 MTLGEKIQKHRKEKSMSQEELAALLGVSRQAVSKWELNDTIPDTENVIQLGKILEVSLDY 60 Query: 73 FFDVSPTVCSDISS 86 + Sbjct: 61 LLKPERETPDEGGD 74 >gi|300717478|ref|YP_003742281.1| transcriptional regulator [Erwinia billingiae Eb661] gi|299063314|emb|CAX60434.1| Transcriptional regulator [Erwinia billingiae Eb661] Length = 185 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 53/140 (37%), Gaps = 11/140 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P G+R+ R +GMSQ ++ E G+T + E+ S LQ Sbjct: 1 MSEATVAP-------GRRLSEIRQQMGMSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQ 53 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + +V +S FF + + + + ++D S L+L + + Sbjct: 54 KLLKVYGLSLSEFFSEPVKDEAPKVVIDAHELIDIGSQGVSLKLIHNGN---PERTLGML 110 Query: 120 IELVRSIVSSEKKYRTIEEE 139 +E ++ +K R EE Sbjct: 111 LETYEPGATTGEKIRHQGEE 130 >gi|268610943|ref|ZP_06144670.1| DNA-binding phage protein [Ruminococcus flavefaciens FD-1] Length = 91 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R LG++Q + + +G+T Q V +E G + L I++ + + Sbjct: 4 ERVKELRNSLGINQVEFSKKIGVTKQCVSNWENGYIQPSIDMLIKIAKTFSVSTDYLLGI 63 Query: 77 SPTVCSDISSEENNV 91 + ++ N Sbjct: 64 NDNPNLNVEGLTNEQ 78 >gi|261219534|ref|ZP_05933815.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261322029|ref|ZP_05961226.1| conserved hypothetical protein [Brucella ceti M644/93/1] gi|260924623|gb|EEX91191.1| conserved hypothetical protein [Brucella ceti M13/05/1] gi|261294719|gb|EEX98215.1| conserved hypothetical protein [Brucella ceti M644/93/1] Length = 472 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 65 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 116 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 117 HQAYRRNSEQL 127 >gi|260768699|ref|ZP_05877633.1| putrescine utilization regulator [Vibrio furnissii CIP 102972] gi|260616729|gb|EEX41914.1| putrescine utilization regulator [Vibrio furnissii CIP 102972] Length = 184 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 7/111 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R +SQ +L E IT + E S L I +V +S FF Sbjct: 6 IGQKIAQLRKEHKLSQRELAEKANITHSAISSIENNKVSPSVSSLHKIVKVFNLSLSEFF 65 Query: 75 DVSPT-VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + +++ + ++L D + ++++ L+ Sbjct: 66 TQDQEIDDRPVVIAPEQLIEIGNERVSMRLV------CDGRDKRRMGFLIE 110 >gi|260565561|ref|ZP_05836045.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|265991265|ref|ZP_06103822.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|265995101|ref|ZP_06107658.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|265999437|ref|ZP_05466359.2| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260151629|gb|EEW86723.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|262766214|gb|EEZ12003.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263002049|gb|EEZ14624.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. Rev.1] gi|263093955|gb|EEZ17889.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] Length = 472 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 65 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 116 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 117 HQAYRRNSEQL 127 >gi|229084128|ref|ZP_04216417.1| hypothetical protein bcere0022_7740 [Bacillus cereus Rock3-44] gi|228699164|gb|EEL51860.1| hypothetical protein bcere0022_7740 [Bacillus cereus Rock3-44] Length = 149 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELKQKVIQDSKQLAHP 82 >gi|257066681|ref|YP_003152937.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256798561|gb|ACV29216.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 134 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R+ M+QE++ E + ++ Q + +E + +S++ E + Sbjct: 1 MKIGDKLKEARLKKNMTQEEVAEKIFVSRQSISNWENNKTYPDIGNVIALSDLYEISLDE 60 Query: 73 FFDVSPTVCSDISSEEN 89 S + + Sbjct: 61 LLKGSDNFMKHLEESTD 77 >gi|42519880|ref|NP_965810.1| hypothetical protein LJ1831 [Lactobacillus johnsonii NCC 533] gi|41584170|gb|AAS09776.1| hypothetical protein LJ_1831 [Lactobacillus johnsonii NCC 533] Length = 161 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R ++QE++ + L +T Q + +E N + I+E + Sbjct: 5 EQIKRLRKENNLTQEEMAKKLNVTRQTISNWENNRNLPDFEIIILIAETFGVSLDELILG 64 Query: 77 SP 78 Sbjct: 65 DK 66 >gi|327191555|gb|EGE58568.1| putative transcriptional regulator protein, LacI family [Rhizobium etli CNPAF512] Length = 189 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 37/87 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + ++ +G RIR R+ G++ + L G++ + + E+ AS L I L Sbjct: 1 MEEQLEQAIGIRIRKLRLEKGLTLDDLSTASGVSRAMISRIERAEASPTASLLARICAAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMD 93 +S FF S ++ ++ + Sbjct: 61 GLSLSAFFAEERQQASPLARRQDQQVW 87 >gi|310287452|ref|YP_003938710.1| helix-turn-helix motif [Bifidobacterium bifidum S17] gi|311064368|ref|YP_003971093.1| hypothetical protein BBPR_0984 [Bifidobacterium bifidum PRL2010] gi|309251388|gb|ADO53136.1| Conserved hypothetical protein with helix-turn-helix motif [Bifidobacterium bifidum S17] gi|310866687|gb|ADP36056.1| Conserved hypothetical protein with helix-turn-helix motif [Bifidobacterium bifidum PRL2010] Length = 161 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ I++ R G++Q + L +T Q + ++EKG ++ IS E P++ Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60 Query: 73 FFDVSPTV 80 ++ Sbjct: 61 LMEMPDNG 68 >gi|291526299|emb|CBK91886.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 69 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 28/66 (42%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N V+ + +R R G + + + + G T + ++E G A+ L +++ Sbjct: 2 NEVEKALSHNLREVREKKGYTLKDVVKGTGYTEVSISRWETGTRIPKATVLYTLAKFYGV 61 Query: 69 PISFFF 74 + FF Sbjct: 62 SVDRFF 67 >gi|257792297|ref|YP_003182903.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317490218|ref|ZP_07948706.1| hypothetical protein HMPREF1023_02406 [Eggerthella sp. 1_3_56FAA] gi|257476194|gb|ACV56514.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316910712|gb|EFV32333.1| hypothetical protein HMPREF1023_02406 [Eggerthella sp. 1_3_56FAA] Length = 71 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG RIR R +SQ+KL + + + K E G ++ IS+ L + F Sbjct: 8 FVGNRIRELRKSQKLSQQKLALMVNVERSYLAKIEGGKRNPSLECIEKISKGLGLSLEEF 67 Query: 74 FDV 76 F Sbjct: 68 FKG 70 >gi|260586996|ref|ZP_05852909.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260542680|gb|EEX23249.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 185 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 10/127 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R ++QE L E ++ Q V K+E G + ++ I++ E + Sbjct: 5 EQLSKLRKEANLTQEDLAEKCDVSRQAVAKWEGGESLPDVYKISQIAKTFEVSLEELIWG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 S +S + M FI + Q + Y I L++ + +S +K R + Sbjct: 65 KDRQDSQMSIARDIYMQFIDNMESFQYDAYSSSIG----------LLKKLKTSIRKSRIV 114 Query: 137 EEECMVE 143 ++ +V+ Sbjct: 115 FKKEIVD 121 >gi|255283309|ref|ZP_05347864.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255266163|gb|EET59368.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 224 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++++ R G SQE+L + +GI Q V K+E G + L +SE+ I Sbjct: 5 EKLQMLRKKNGYSQEQLADKIGIARQTVSKWENGQAIPELNGLILLSELYGVTIDRIVKD 64 Query: 77 SPT 79 Sbjct: 65 DDE 67 >gi|315644486|ref|ZP_07897618.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315279993|gb|EFU43290.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 272 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K I R G++QE L LG+TFQ V K+E G + L +S++LE + Sbjct: 4 MLAKNINRYRKERGLTQEALAHKLGVTFQAVSKWETGQTMPDVALLPELSQLLEVSMDKL 63 Query: 74 FDVSPT--VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 F S T S E + T G + I + R K++++ Sbjct: 64 FGYSSTGKSLSIYEEEYKTPDYYWGTEPGAACYQVLEMIPPTR-RIKLLDI 113 >gi|114569052|ref|YP_755732.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114339514|gb|ABI64794.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 68 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R G SQ+ L + L ++ Q V E G ++ + PI FD Sbjct: 3 NQLRELRGEKGWSQQALADHLDVSRQTVNALETGKYDPSLPLAFKLARLFGEPIESIFDD 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|15612908|ref|NP_241211.1| transcriptional regulator (phage-related) [Bacillus halodurans C-125] gi|10172958|dbj|BAB04064.1| transcriptional regulator (phage-related) [Bacillus halodurans C-125] Length = 116 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 12/118 (10%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R ++Q+++ L IT YE+G N +L+ +++ I+F + Sbjct: 7 RLRELRNAHNLTQQEVASFLNITESAYGFYEQGRNEPSIGKLKQLAQKYNVSIAFLAGET 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR--QKIIELVRSIVSSEKKY 133 +S + L+ + +DD ++R + +EL R + +++ Sbjct: 67 DAKEPYANSSVHEHP----------LSYKYKDLDDEELRFLDEQLELFRRLKREKEEK 114 >gi|312792894|ref|YP_004025817.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312878073|ref|ZP_07738009.1| transcriptional regulator, XRE family [Caldicellulosiruptor lactoaceticus 6A] gi|311795152|gb|EFR11545.1| transcriptional regulator, XRE family [Caldicellulosiruptor lactoaceticus 6A] gi|312180034|gb|ADQ40204.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 285 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G++QE+L LG+ Q + YE G + + L I++ + + S Sbjct: 5 RLKELREEKGLTQEELALMLGLKRQSISNYENGGRQPDYNTLIKIADFFGVTVDYLVGHS 64 Query: 78 PTVCSDISSEENNVMD 93 + + N + Sbjct: 65 DFRTREEEFKGRNFYE 80 >gi|261214180|ref|ZP_05928461.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261314092|ref|ZP_05953289.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261317820|ref|ZP_05957017.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261752493|ref|ZP_05996202.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261755152|ref|ZP_05998861.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|265988850|ref|ZP_06101407.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|260915787|gb|EEX82648.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|261297043|gb|EEY00540.1| conserved hypothetical protein [Brucella pinnipedialis B2/94] gi|261303118|gb|EEY06615.1| conserved hypothetical protein [Brucella pinnipedialis M163/99/10] gi|261742246|gb|EEY30172.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261744905|gb|EEY32831.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|264661047|gb|EEZ31308.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] Length = 472 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 65 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 116 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 117 HQAYRRNSEQL 127 >gi|18309709|ref|NP_561643.1| hypothetical protein CPE0727 [Clostridium perfringens str. 13] gi|18144386|dbj|BAB80433.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 268 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 38/78 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++++L R G+SQE L E LGI+ Q V K+E G + ++L +SE+ I + Sbjct: 1 MKLAEKLQLMRKREGLSQEDLAEKLGISRQAVSKWESGQSVPDLNKLIILSELYNVTIDY 60 Query: 73 FFDVSPTVCSDISSEENN 90 + E N Sbjct: 61 LVKETYEFEGSQEKEIGN 78 >gi|17546626|ref|NP_520028.1| DNA-binding repressor transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428925|emb|CAD15609.1| putative dna-binding repressor transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 173 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 16/128 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R LG SQ G + +EKG A L ++ + + + Sbjct: 25 IGERLKEERERLGFSQPAFAAIGGASKGSQLAWEKGTAMPNAEFLHDVAR-VGVDVLYVI 83 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV-SSEKKY 133 E ++ + D + R ++ L+ + +EKK Sbjct: 84 TGRRDSALTSPDE--------------EMVLAGYRQLDARGRTGVLALIGGMQPPAEKKV 129 Query: 134 RTIEEECM 141 + + E + Sbjct: 130 KKTQAEMV 137 >gi|317062103|ref|ZP_07926588.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313687779|gb|EFS24614.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 184 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 35/82 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R G+S +L + ++ + + E+G L+ I+ L+ +S+ Sbjct: 5 IGERIKKSRNERGLSLRELASKVDLSASFLSQIEQGKASPSIENLKKIATSLDVKVSYLI 64 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 + + +++ S Sbjct: 65 EDEEETRNMEVVKKDERKYIES 86 >gi|301794241|emb|CBW36661.1| Phage transcriptional regulator [Streptococcus pneumoniae INV104] Length = 167 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 4/101 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD- 75 RI+ R ++Q +L I ++ +Q++E G + + Q +++ I Sbjct: 5 NRIKQLRKENNLTQRELANETKIPYRTIQRWENGETDIKSDAAQVLADYFGVSIPHLLGY 64 Query: 76 ---VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 ++ T + ++++ F+ + + FI+ +D Sbjct: 65 SDLIADTDSDIKAMAYSHLLTFVDEKQIKEFEKEFIRANDN 105 >gi|270289873|ref|ZP_06196099.1| XRE family transcriptional regulator [Pediococcus acidilactici 7_4] gi|270281410|gb|EFA27242.1| XRE family transcriptional regulator [Pediococcus acidilactici 7_4] Length = 188 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 29/61 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R ++Q ++ L +T Q + ++E+G L+ ++E+ I Sbjct: 1 MSIGPALQKVRQDRHLTQAEVASQLYVTRQTISRWEQGKTIPNIYALKDLAELYGVSIDE 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|260463673|ref|ZP_05811871.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|319785160|ref|YP_004144636.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259030527|gb|EEW31805.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|317171048|gb|ADV14586.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 124 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 38/71 (53%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNP + +GKR++ R +G++QE+ L + + + E G VGA ++ ++ + E Sbjct: 11 PNPEAVRLGKRLKDAREYVGITQEEAANHLKVRRSAISEMEAGKRGVGALEMKSLAVLYE 70 Query: 68 SPISFFFDVSP 78 P S+F S Sbjct: 71 RPTSWFTGESE 81 >gi|229541996|ref|ZP_04431056.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229326416|gb|EEN92091.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 189 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 38/86 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ G++QE+LGE ++ + + E+ ++ +I EVL Sbjct: 10 MKIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSIDTFFNILEVLGCTPKE 69 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 FFD + EE+ Sbjct: 70 FFDEEEREQKVVYGEEDQTDYLDEER 95 >gi|225627656|ref|ZP_03785693.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|261758376|ref|ZP_06002085.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|225617661|gb|EEH14706.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|261738360|gb|EEY26356.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] Length = 472 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 65 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 116 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 117 HQAYRRNSEQL 127 >gi|167755461|ref|ZP_02427588.1| hypothetical protein CLORAM_00975 [Clostridium ramosum DSM 1402] gi|167704400|gb|EDS18979.1| hypothetical protein CLORAM_00975 [Clostridium ramosum DSM 1402] Length = 426 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 1 MVGNKKIPNPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 ++ K N +++ VG+ I L+R G++Q++L L ++FQ V K+E G L Sbjct: 3 IIKEKGGINMINVNKVGEFITLKRKEKGLTQQQLANKLSVSFQAVSKWENGGL-PNVEIL 61 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 ++ +LE + +S +D + + + +++ D +V + Sbjct: 62 SDLAALLEITVDELLAGVEKELEGLSYS-KAGVDIAYSDAIKREMKQYLKTSDPRVLNGL 120 >gi|154483973|ref|ZP_02026421.1| hypothetical protein EUBVEN_01681 [Eubacterium ventriosum ATCC 27560] gi|149735015|gb|EDM50901.1| hypothetical protein EUBVEN_01681 [Eubacterium ventriosum ATCC 27560] Length = 236 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 1/75 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R +SQE+L L ++ Q + K+E G + L IS + + + + Sbjct: 5 SKLQKLRKDNNLSQEQLASELCVSRQAISKWELGTL-PDINNLVKISNFFDCSLDYLMND 63 Query: 77 SPTVCSDISSEENNV 91 + Sbjct: 64 DKEDQFEEEFSNEQN 78 >gi|146319181|ref|YP_001198893.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146321385|ref|YP_001201096.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|253752226|ref|YP_003025367.1| DNA-binding phage protein [Streptococcus suis SC84] gi|253754052|ref|YP_003027193.1| DNA-binding phage protein [Streptococcus suis P1/7] gi|253755986|ref|YP_003029126.1| DNA-binding phage protein [Streptococcus suis BM407] gi|145689987|gb|ABP90493.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] gi|145692191|gb|ABP92696.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|251816515|emb|CAZ52151.1| putative DNA-binding phage protein [Streptococcus suis SC84] gi|251818450|emb|CAZ56279.1| putative DNA-binding phage protein [Streptococcus suis BM407] gi|251820298|emb|CAR46798.1| putative DNA-binding phage protein [Streptococcus suis P1/7] gi|292558817|gb|ADE31818.1| prophage Sa05, DNA-binding protein [Streptococcus suis GZ1] gi|319758615|gb|ADV70557.1| transcriptional regulator [Streptococcus suis JS14] Length = 173 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 54/129 (41%), Gaps = 4/129 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R ++QE+L + +G+ + +QK+E G + + + +++ + + Sbjct: 2 NKLKTLRKENNLTQEELAKKIGVNLRTLQKWENGESSIRTKNAEKLAKHFGVSVGYLLGY 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVRSIV--SSEKK 132 V + + + ++LN ++ +KI + V + + ++ Sbjct: 62 EDKVKKEFYKQLDLYNLDEFRKFRIKLNIELSLLNGILDNDYEKISDKVSYLNNFADKEL 121 Query: 133 YRTIEEECM 141 R +E EC+ Sbjct: 122 KRGMENECL 130 >gi|52143615|ref|YP_083215.1| transcriptional regulator [Bacillus cereus E33L] gi|51977084|gb|AAU18634.1| conserved hypothetical protein; possible transcriptional regulator [Bacillus cereus E33L] Length = 146 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 33/65 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R G+SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSLGEQLKKLRESKGISQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVS 77 + Sbjct: 61 LIKGN 65 >gi|322392726|ref|ZP_08066186.1| hypothetical transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321144718|gb|EFX40119.1| hypothetical transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 228 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 58/126 (46%), Gaps = 28/126 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ + LGI+FQ +E+GV +++ + ++L+ P +F Sbjct: 5 EKLKARRKELKLTQKEIADQLGISFQAYSAWERGVKEPSEEKVKQLEKILKVPKGYF--- 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR-- 134 +++ + + + + ++K++ R++ E+ + Sbjct: 62 ----------------------TQIEIVCLYNSLSN-QGKEKVVVYARNLAQEEQAKKVT 98 Query: 135 TIEEEC 140 T+ E+ Sbjct: 99 TMPEKL 104 >gi|257785053|ref|YP_003180270.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257473560|gb|ACV51679.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 364 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE+L L ++ Q V K+E + ++ +SE+ + Sbjct: 1 MLLSEKIMSLRKRNGWSQEELARQLNVSRQSVSKWESMASMPDIQKIMTMSELFGVSTDY 60 Query: 73 FFDVSPTVCSDISSEEN 89 ++ + Sbjct: 61 LLKDEMEDLPATAASLD 77 >gi|239624525|ref|ZP_04667556.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239520911|gb|EEQ60777.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 177 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 36/68 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R++ G++QE+L + ++ + + E+ + + L I + L + I Sbjct: 1 MDIGNKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTTIGD 60 Query: 73 FFDVSPTV 80 FF +P Sbjct: 61 FFTETPDE 68 >gi|197106465|ref|YP_002131842.1| transcriptional regulator, XRE family [Phenylobacterium zucineum HLK1] gi|196479885|gb|ACG79413.1| transcriptional regulator, XRE family [Phenylobacterium zucineum HLK1] Length = 469 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 1/132 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG ++R R G+ + LGI+ + + E V + L I+EV Sbjct: 5 LFVGPQVRSLRQEQGLKLQACAARLGISVSYLSQIEANQRPVTSRVLASIAEVFGVAPEV 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F E P GL R + + ++ ++L R+ ++ Sbjct: 65 FEAREDERLIADLREAVAESAHPGAPVGLSEIRR-VALQAPAFARRFLDLHRANQRLTER 123 Query: 133 YRTIEEECMVEQ 144 EE +++ Sbjct: 124 LNLTEEAVALDE 135 >gi|329725145|gb|EGG61635.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21189] Length = 112 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +IR R L ++Q++LGE L + YE G L I+ +L I Sbjct: 8 KFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDD 67 Query: 73 FFDVSPTVCSDISS 86 F +DI+S Sbjct: 68 LFPTRNNKKNDITS 81 >gi|306825566|ref|ZP_07458905.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431927|gb|EFM34904.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 69 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R +SQ+ L + +G+ + +E G +++ + ++E I + Sbjct: 7 NRIRELRKQSRLSQQALADQIGVFRNTISNWETGYSQISLENAKKVAEYFGVTIDYLLGS 66 Query: 77 SPT 79 Sbjct: 67 ESD 69 >gi|296129256|ref|YP_003636506.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296021071|gb|ADG74307.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 75 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Query: 17 KRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RIR R G M+Q +L LG+T Q V E+G I+ L P+ FD Sbjct: 10 NRIRALRTERGDMTQAELARHLGVTRQTVIAIEQGRYSPSLETAFQIARALGVPLDEVFD 69 Query: 76 VSPTVC 81 Sbjct: 70 YPDDAD 75 >gi|228907545|ref|ZP_04071402.1| hypothetical protein bthur0013_17120 [Bacillus thuringiensis IBL 200] gi|228852037|gb|EEM96834.1| hypothetical protein bthur0013_17120 [Bacillus thuringiensis IBL 200] Length = 146 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSIGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDV 76 Sbjct: 61 LIKG 64 >gi|228994922|ref|ZP_04154700.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM 12442] gi|228764824|gb|EEM13600.1| Transcriptional regulator, Cro/CI [Bacillus pseudomycoides DSM 12442] Length = 116 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 46/109 (42%), Gaps = 6/109 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ R ++QE+LG +G++ + +EKG G L+ I++ + Sbjct: 1 MIGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 S E + + I T +G + + + + ++ +L Sbjct: 61 LGRSEDP------ELSEEENKIVTEEGKNILALIESLPEDERKKAWEQL 103 >gi|227873147|ref|ZP_03991438.1| conserved hypothetical protein [Oribacterium sinus F0268] gi|227840978|gb|EEJ51317.1| conserved hypothetical protein [Oribacterium sinus F0268] Length = 300 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 45/98 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK I +R LGM+Q++L E +G++ + V K+E+G+ S + +L I+ Sbjct: 4 VKIGKYISEKRKNLGMTQKQLAEKIGMSDKSVSKWERGICLPDVSLYFDLCSILGISINE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 F V +I + + + T + R I Sbjct: 64 FLAGEDIVHENIEKKSEENIISVVTDSKHRQKRLKYII 101 >gi|284032671|ref|YP_003382602.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811964|gb|ADB33803.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 191 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 6/109 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R+R R G + +L E GI+ + + E G R L ++ + Sbjct: 5 DEVLEAVGPRLRRLRQERGTTLTQLAESTGISVSTLSRLEAGQRRPTLELLLPLARAHQV 64 Query: 69 PISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + D P + S V+ +S G + F QI Sbjct: 65 QLDELVDAPSTGDPRIHSKPIKRFGAVLIPLSRRPGG--LQAFKQIAPP 111 >gi|221635639|ref|YP_002523515.1| transcriptional Regulator of molybdate metabolism, XRE family [Thermomicrobium roseum DSM 5159] gi|221157546|gb|ACM06664.1| transcriptional Regulator of molybdate metabolism, XRE family [Thermomicrobium roseum DSM 5159] Length = 506 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 1/85 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV- 76 R+R RR G+SQ++L E GI+ Q + E G + ++ L + F Sbjct: 144 RVRERRRSCGLSQQQLAERAGISRQTLVAIEAGRLTPSVAVALRLARALGCAVEELFSFA 203 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 P + + I + L Sbjct: 204 EPPLLEAQLALSERWTVPIPSRVRL 228 >gi|150398353|ref|YP_001328820.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029868|gb|ABR61985.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 182 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 35/84 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+T + E + L+ I + + + Sbjct: 1 MSVDIGNRLRRVRLRHNLSQRELAKRAGVTNSTISLIESNSSNPSVGALKRILDGIPIGL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF P +++ Sbjct: 61 AEFFSFEPEKPRKAFYAAEELVEI 84 >gi|309792582|ref|ZP_07687044.1| cupin 2 domain-containing protein [Oscillochloris trichoides DG6] gi|308225396|gb|EFO79162.1| cupin 2 domain-containing protein [Oscillochloris trichoides DG6] Length = 206 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 2/81 (2%) Query: 3 GNKKIPNPVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + P+P D ++VG R+R R +S L E G+ + E G S LQ Sbjct: 18 EARDCPSPQDGKVDVGARLRFLREGRQLSIRALAEASGLAVNTLSLIENGKTSPSVSTLQ 77 Query: 61 HISEVLESPISFFFDVSPTVC 81 ++ L PI+ FF+ Sbjct: 78 QVAVALGVPITSFFEPDSPRS 98 >gi|257867254|ref|ZP_05646907.1| predicted protein [Enterococcus casseliflavus EC30] gi|257873587|ref|ZP_05653240.1| predicted protein [Enterococcus casseliflavus EC10] gi|257801310|gb|EEV30240.1| predicted protein [Enterococcus casseliflavus EC30] gi|257807751|gb|EEV36573.1| predicted protein [Enterococcus casseliflavus EC10] Length = 263 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 34/72 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK I+ R ++QE+L + +T Q + K+E G + ++ +S E + + Sbjct: 1 MDIGKIIKEERTKRNLTQEQLAQEFFVTRQLISKWENGKSYPDLDQVVKLSSYFELTLDY 60 Query: 73 FFDVSPTVCSDI 84 + ++ Sbjct: 61 LLKEDQQMVQEL 72 >gi|167463515|ref|ZP_02328604.1| transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 151 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 10/124 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+RIR RR +L ++Q ++ E L + E G +S LQ I+++L++ + Sbjct: 1 MSIGERIRQRRKLLQITQLEIAEQLKMGRSNFGHIENGRVTPSSSDLQKIADILQTNADY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD----------VKVRQKIIEL 122 + ++ +T + + +Q D + R KI+ + Sbjct: 61 LLGRTDDPSPQGAAAGLKTYPEWATSKDKRDLKKMLQSPDVLYFDGIEFSDEDRAKILGV 120 Query: 123 VRSI 126 + +I Sbjct: 121 METI 124 >gi|167462690|ref|ZP_02327779.1| DNA-binding protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384965|ref|ZP_08058621.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150262|gb|EFX43769.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 241 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 44/116 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R L +Q+++ E GI+ + EK S ++ I+E + + Sbjct: 1 MKIGDRIKNIRKALRYTQKEVAENAGISRMYLSDVEKNRYNPSLSVIEKIAEAMGISVDR 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 S + N+ RY IDD+K + E+V I Sbjct: 61 LTGDSVSALIAERLGTMNMTYNELAKRTGTTIRYLEGIDDIKPDEGDYEVVGKIAD 116 >gi|18071197|ref|NP_542206.1| hypothetical protein pRC18_p01 [Lactobacillus curvatus] gi|17986239|gb|AAL54849.1| hypothetical membrane protein [Lactobacillus curvatus] Length = 202 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G R++ R L ++QE++ IT Q + +E + L +S+ + Sbjct: 1 MKFGDRLKNARTELNLTQEQVANDFFITRQTISSWENEKTYPDIANLIKLSDYYHISLDI 60 Query: 73 FFDVSPTVCSDISSEE 88 + + EE Sbjct: 61 LLKEDTGMREFLEKEE 76 >gi|308751810|gb|ADO45293.1| transcriptional regulator, XRE family [Hydrogenobacter thermophilus TK-6] Length = 311 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 35/84 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R+R R LG+SQE+ GE +G + + +Q +E G ++ + L+ I+ + Sbjct: 88 IHNRLRYLRKTLGLSQEEFGERIGKSLRTIQYWEAGTVQIPDTALKLIASTFGVSYEWLK 147 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + +++ Sbjct: 148 TGQGEMWGREKLSLEEIIEREQRK 171 >gi|302388210|ref|YP_003824032.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198838|gb|ADL06409.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 177 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 37/68 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R++ G++QE+L + ++ + + E+ + + L I + L + + Sbjct: 1 MDIGAKLKELRVLKGLTQEELADRAELSKGFISQLERDLTSPSIATLLDILQCLGTSVGE 60 Query: 73 FFDVSPTV 80 FF+ SP Sbjct: 61 FFNESPEE 68 >gi|288818209|ref|YP_003432557.1| putative prophage repressor [Hydrogenobacter thermophilus TK-6] gi|288787609|dbj|BAI69356.1| putative prophage repressor [Hydrogenobacter thermophilus TK-6] Length = 235 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 35/84 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R+R R LG+SQE+ GE +G + + +Q +E G ++ + L+ I+ + Sbjct: 12 IHNRLRYLRKTLGLSQEEFGERIGKSLRTIQYWEAGTVQIPDTALKLIASTFGVSYEWLK 71 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + +++ Sbjct: 72 TGQGEMWGREKLSLEEIIEREQRK 95 >gi|260566283|ref|ZP_05836753.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|260155801|gb|EEW90881.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] Length = 472 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 65 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 116 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 117 HQAYRRNSEQL 127 >gi|206975059|ref|ZP_03235973.1| HTH-type transcriptional regulator xre (Putative PbsX repressor) [Bacillus cereus H3081.97] gi|217959610|ref|YP_002338162.1| putative DNA-binding protein [Bacillus cereus AH187] gi|229138835|ref|ZP_04267416.1| transcriptional regulator [Bacillus cereus BDRD-ST26] gi|206746480|gb|EDZ57873.1| HTH-type transcriptional regulator xre (Putative PbsX repressor) [Bacillus cereus H3081.97] gi|217065315|gb|ACJ79565.1| putative DNA-binding protein [Bacillus cereus AH187] gi|228644751|gb|EEL01002.1| transcriptional regulator [Bacillus cereus BDRD-ST26] Length = 117 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 7/119 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ G+SQ++L + +G++ V Y +G + G LQ I++ L+ + V Sbjct: 5 ERLKSLIDKKGISQQQLADAIGVSHVSVYNYVEGKKKPGIRTLQKIAKHLKVTTDYLLGV 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S + D T + ++ + + K R+K +E + V+ EK R Sbjct: 65 SDSP------HLTADQDLQLTKEAQEILQIINDLP-EKQRKKALEQLEMFVNYEKTKRN 116 >gi|16078945|ref|NP_389766.1| Xre family transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221309780|ref|ZP_03591627.1| hypothetical protein Bsubs1_10396 [Bacillus subtilis subsp. subtilis str. 168] gi|221314102|ref|ZP_03595907.1| hypothetical protein BsubsN3_10327 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319024|ref|ZP_03600318.1| hypothetical protein BsubsJ_10243 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323298|ref|ZP_03604592.1| hypothetical protein BsubsS_10362 [Bacillus subtilis subsp. subtilis str. SMY] gi|81342368|sp|O34647|YOBD_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator yobD gi|2619003|gb|AAB84427.1| transcription regulator [Bacillus subtilis] gi|2634278|emb|CAB13777.1| transcriptional regulator (phage-related, Xre family) [Bacillus subtilis subsp. subtilis str. 168] Length = 112 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 5/110 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R ++ E+L E +GI YE + +L ++ + + + + + Sbjct: 4 QRLRQLRKAHKLTMEQLAEKIGIAKSSYGGYEAESKKPPLDKLVILARLYDVSVDYILGL 63 Query: 77 SPTVCSDISSEENNVMDFISTPD-GLQLNRYFIQIDDVKVRQKIIELVRS 125 + D E N+ +F+ PD + +I D +KI++LV + Sbjct: 64 TDDP--DPKVERKNLKEFLEKPDIHWDGYKLTPEILDP--IRKILKLVTA 109 >gi|47565539|ref|ZP_00236580.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|47557529|gb|EAL15856.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 137 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 34/78 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+ ++ R G SQ + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MNLGELLKKLRESKGFSQGDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENN 90 + I S+ + Sbjct: 61 LIKGNQDFKKKIHSDAED 78 >gi|322388988|ref|ZP_08062558.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321144293|gb|EFX39701.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 247 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ K+++ RR+ G++Q + E L I+ + +E G+ L+ +++ L Sbjct: 22 DMFDAKKLKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKED 81 Query: 72 FFFDVSPT 79 +F + Sbjct: 82 YFINKDSA 89 >gi|261222350|ref|ZP_05936631.1| conserved hypothetical protein [Brucella ceti B1/94] gi|265998315|ref|ZP_06110872.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|260920934|gb|EEX87587.1| conserved hypothetical protein [Brucella ceti B1/94] gi|262552783|gb|EEZ08773.1| conserved hypothetical protein [Brucella ceti M490/95/1] Length = 472 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 65 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 116 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 117 HQAYRRNSEQL 127 >gi|114798188|ref|YP_761228.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114738362|gb|ABI76487.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 126 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 8/122 (6%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + PN +D VG IR R ++ + L +G++ QQ+QKYE NR+ A L ++E Sbjct: 12 RSPNDLDRIVGSNIRALRQSQNITLQALATEIGVSHQQLQKYETSANRLSAGMLPIVAEA 71 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L +S + SD E + ++ +V + ++R+ Sbjct: 72 LGVEVSDLYFNEQCAKSDQHDEAA--------RLRKECEGVIQRVKSKEVLASMARVLRA 123 Query: 126 IV 127 + Sbjct: 124 MA 125 >gi|321272294|gb|ADW80179.1| putative transcriptional regulator [Wolbachia endosymbiont wVitA of Nasonia vitripennis phage WOVitA1] Length = 325 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 12/139 (8%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+ +GK+I R++ G +Q KL +G+T +++ +E G + I+ L Sbjct: 23 SVNYELGKKIEGCRIVQGYTQAKLASKIGLTHKEIHNFELGCKAITIKESYIIAGALSVN 82 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV-- 127 + + N + + L + +I D ++R+K+ LVR + Sbjct: 83 VVDLL-------PGPTVLRENGWYEDEDKEIVYLTKIHREIKDQELRKKLYPLVRFVYIS 135 Query: 128 ---SSEKKYRTIEEECMVE 143 S E+ + + E Sbjct: 136 EKISQEEAKIEVARNLVKE 154 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + VGKRI+ +R+I +QE L +G T +++ YE+G + L I++ L Sbjct: 182 DSILYKVGKRIKEQRLIREYTQEDLANKIGSTPKEIHDYERGYTDIPIEILYKIAKTLSV 241 Query: 69 PI 70 I Sbjct: 242 NI 243 >gi|317131914|ref|YP_004091228.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469893|gb|ADU26497.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 118 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 47/114 (41%), Gaps = 1/114 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R+R R + +SQ K+ +G T + +YE GV+ + L ++ + + + Sbjct: 2 KEIGNRLRALREGVKLSQAKIANLVGTTQATINRYETGVSSPPLNVLIWYADHFDVSMDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIELVRS 125 F + + ++ L++ + +++Q + E+++ Sbjct: 62 IFARTEKPQGKLYDYRPKFIESNEEFKQFLEMCFDPTSPMNDRLKQALFEMMQE 115 >gi|255284008|ref|ZP_05348563.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265461|gb|EET58666.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 112 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 23/78 (29%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK++R R ++Q ++ L I YE L I++ P+ + Sbjct: 6 LGKKLRALRERRHLTQAEVSALLHIERAAYSNYENDKRIPSFETLLLIADFYGVPVEYLI 65 Query: 75 DVSPTVCSDISSEENNVM 92 Sbjct: 66 RSDYAETPRHRKHAAEWF 83 >gi|221232058|ref|YP_002511210.1| transcriptional regulator [Streptococcus pneumoniae ATCC 700669] gi|220674518|emb|CAR69079.1| transcriptional regulator [Streptococcus pneumoniae ATCC 700669] Length = 286 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ +R G SQ+ L E + Q+ K E+G A L ++ L+ P+ +FFD Sbjct: 7 KLKAKRKEKGFSQKTLSEGI-CEQSQISKIERGNYMPAADLLYKLANRLQVPLDYFFDEQ 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQL 103 + S+I+ + + + L Sbjct: 66 IEMTSNITPFKKLAEKLLEDRNYEDL 91 >gi|210611267|ref|ZP_03288822.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787] gi|210152031|gb|EEA83038.1| hypothetical protein CLONEX_01012 [Clostridium nexile DSM 1787] Length = 122 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 15/125 (12%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +GKRI+ R LG++QE+ E G T + E+G + L + LE Sbjct: 13 IDKRIGKRIKQCRERLGLTQEEFAEKTGFTANYISTLERGASFPRCENLILLLNALEVSA 72 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F ++ ++ +T +L V + +I+++V ++ E Sbjct: 73 DAIFCD----------VLDHTTEYKATQLSNEL-----GTLSVDAQNRILQIVELLIRQE 117 Query: 131 KKYRT 135 K+ Sbjct: 118 KENEK 122 >gi|209551825|ref|YP_002283742.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537581|gb|ACI57516.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 189 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 36/87 (41%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + ++ +G RIR R+ G++ + L G++ + + E+ AS L I L Sbjct: 1 MEEQLEQAIGIRIRKLRLDKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMD 93 +S FF + ++ + + Sbjct: 61 GLSLSAFFAEEGEQAAPLARRQEQQVW 87 >gi|268608967|ref|ZP_06142694.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 324 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 10/82 (12%), Positives = 28/82 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++ R + Q+ L + L ++ + +E L+ I+ E I + Sbjct: 1 MLGDILKELRNKKNLYQQDLADILSVSKSTIAMWETNKREPDLLMLKKIANYFEVSIDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 + +++ + Sbjct: 61 LSDTIKFDFVPRELDDDHAMLV 82 >gi|257877340|ref|ZP_05656993.1| predicted protein [Enterococcus casseliflavus EC20] gi|257811506|gb|EEV40326.1| predicted protein [Enterococcus casseliflavus EC20] Length = 263 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 34/72 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK I+ R ++QE+L + +T Q + K+E G + ++ +S E + + Sbjct: 1 MDIGKIIKEERTKRNLTQEQLAQEFFVTRQLISKWENGKSYPDLDQVVKLSSYFELTLDY 60 Query: 73 FFDVSPTVCSDI 84 + ++ Sbjct: 61 LLKEDQQMVQEL 72 >gi|32473937|ref|NP_866931.1| transcription regulator [Rhodopirellula baltica SH 1] gi|32444474|emb|CAD74472.1| probable transcription regulator [Rhodopirellula baltica SH 1] Length = 233 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 3/131 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R+R R+ GM+ +++ + G T + + E L ++ L S Sbjct: 53 VELAQRLRQLRLDRGMTLDEVAQKSGQTKSWLSRVENFRITPSLPALADLASSLGVSTSS 112 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + PD Y+ + R L++ E++ Sbjct: 113 LLEGLDDRPQIVCVRHDERKKIQRDPDSS--IEYYSLASERTHRTMDPFLLKIPSGEERE 170 Query: 133 YRTIE-EECMV 142 RT E EE + Sbjct: 171 PRTHEGEEFLT 181 >gi|229088202|ref|ZP_04220142.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44] gi|228695098|gb|EEL48134.1| hypothetical protein bcere0022_46150 [Bacillus cereus Rock3-44] Length = 181 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R ++ +++ + ++ + + E+ + + L+ ISE L S+FF Sbjct: 5 IGVKIKRLRKERKLTLKQIADQTNLSISFLSQVERSKSSITLESLKKISEALGVNPSYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 S + N+++ +T R + + I+ L+ E+ Y Sbjct: 65 --SEPEKQTTPTVMRNIINKTNTLHYQFFYRDLAGNIENPIFNPILVLLNPGAKREESYS 122 Query: 135 TIEEECM 141 +E + Sbjct: 123 HSGQEFL 129 >gi|262200800|ref|YP_003272008.1| transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084147|gb|ACY20115.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 192 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D+ V +RIR R+ G + + L ++ + + E G RV +L I++ L Sbjct: 1 MAQELDVVVRQRIRGLRIAKGWTLDALAARCFLSPSTLSRIETGHRRVALDQLVPIAQAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEE 88 + + + + I E Sbjct: 61 GTTLDQLVEPADDGDVVIRPEP 82 >gi|239628519|ref|ZP_04671550.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239518665|gb|EEQ58531.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 123 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 9/129 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DI+ +R++ R LG++ G + +T + EKG+ + L+ I Sbjct: 1 MDIH--ERLKYLRTQLGLTTRAFGASINMTGGAITNMEKGLRNITDRTLKDICREYNVNP 58 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + D V D S + D QL R + + + K R+ + ++ S+ Sbjct: 59 EWLTDGKEPVFLDTVSSLDVEED------VKQLARQY-SLLNDKDRELVKSIIHSLYEKI 111 Query: 131 KKYRTIEEE 139 + +T +++ Sbjct: 112 EPQKTTDKK 120 >gi|160938164|ref|ZP_02085520.1| hypothetical protein CLOBOL_03058 [Clostridium bolteae ATCC BAA-613] gi|158438968|gb|EDP16724.1| hypothetical protein CLOBOL_03058 [Clostridium bolteae ATCC BAA-613] Length = 359 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 40/94 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DI +G RI R M+QE+L LG++ V K+E G + S L ++ LE+ + Sbjct: 1 MDIKLGPRIASLRRAKSMTQEQLALSLGVSPPAVSKWETGASCPDISLLCPLARALETNV 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 T+ + N + + G + Sbjct: 61 DTLLQFEETLTEEQIDARLNEIVETARNHGYEAA 94 >gi|291556308|emb|CBL33425.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 301 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G I+ R M+QE L E + ++ Q V K+E +L +S+ + Sbjct: 1 MSLGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTAFPETDKLITLSDYFGCTLDE 60 Query: 73 FFDVSPTV--CSDISSEENNVMDFIS 96 S D + + + F S Sbjct: 61 LIKGSAEENFTEDAAGYDKEMNSFTS 86 >gi|259502238|ref|ZP_05745140.1| transcription regulator [Lactobacillus antri DSM 16041] gi|259169856|gb|EEW54351.1| transcription regulator [Lactobacillus antri DSM 16041] Length = 212 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 31/73 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R +Q+++ LG++ + + +E G + L +S++ + + Sbjct: 5 EKIKQYRAHNNWTQQEVATKLGVSRKTISSWENGRSYPDIFMLVQLSDLYQISLDDLLRE 64 Query: 77 SPTVCSDISSEEN 89 + ++ E Sbjct: 65 DHEMINNYKQEHA 77 >gi|229078339|ref|ZP_04210903.1| hypothetical protein bcere0023_10100 [Bacillus cereus Rock4-2] gi|228705014|gb|EEL57436.1| hypothetical protein bcere0023_10100 [Bacillus cereus Rock4-2] Length = 149 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 29/78 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R SQ L E L ++ Q V K+E G N + H+S++ I Sbjct: 5 EHLKEEREKRNWSQNDLAEKLHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRG 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|229150820|ref|ZP_04279032.1| Transcriptional regulator (Phage-related) protein [Bacillus cereus m1550] gi|228632609|gb|EEK89226.1| Transcriptional regulator (Phage-related) protein [Bacillus cereus m1550] Length = 138 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 35/90 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R + + Q + E L I+ YE+G N ++ ++E + +S+ Sbjct: 8 YIKERLKRLRKLHNLKQRDVAEYLDISESAYGYYEQGRNEPSLDSVRKLAEKYDVSVSYL 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + + + + + QL Sbjct: 68 LGETDEEGNYSKTSDEYDPITEISKYIQQL 97 >gi|167749809|ref|ZP_02421936.1| hypothetical protein EUBSIR_00777 [Eubacterium siraeum DSM 15702] gi|167657292|gb|EDS01422.1| hypothetical protein EUBSIR_00777 [Eubacterium siraeum DSM 15702] Length = 301 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G I+ R M+QE L E + ++ Q V K+E +L +S+ + Sbjct: 1 MSLGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTAFPETDKLITLSDYFGCTLDE 60 Query: 73 FFDVSPTV--CSDISSEENNVMDFIS 96 S D + + + F S Sbjct: 61 LIKGSAEENFTEDAAGYDKEMNSFTS 86 >gi|22537855|ref|NP_688706.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|76787796|ref|YP_330325.1| DNA-binding protein [Streptococcus agalactiae A909] gi|76798410|ref|ZP_00780651.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|77405968|ref|ZP_00783047.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae H36B] gi|77409450|ref|ZP_00786144.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|22534750|gb|AAN00579.1|AE014269_23 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|76562853|gb|ABA45437.1| DNA-binding protein [Streptococcus agalactiae A909] gi|76586242|gb|EAO62759.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|77171942|gb|EAO75117.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77175420|gb|EAO78210.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae H36B] Length = 197 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE+L E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + T + L Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTKVMVTLM 92 >gi|330862695|emb|CBX72841.1| hypothetical protein YEW_CE09110 [Yersinia enterocolitica W22703] Length = 178 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 34/87 (39%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 25 MKKTLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANAL 84 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMD 93 FF + +D D Sbjct: 85 NVEPWQFFVSDSSEDNDTELLVPYAAD 111 >gi|325068074|ref|ZP_08126747.1| Cro/CI family transcriptional regulator putative [Actinomyces oris K20] Length = 146 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + I R +QE L +G++ Q + K+E S +++ + I Sbjct: 1 MISSNIAALRKKHRWTQEALANKVGVSRQTIAKWEAPGGNPDISSCIRLAQAFDVAIDDL 60 Query: 74 FDVS 77 + Sbjct: 61 VNGD 64 >gi|322806814|emb|CBZ04383.1| DNA-binding protein [Clostridium botulinum H04402 065] Length = 92 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 32/81 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R +QE+LG+ L ++ Q + YE G S L I+ + + + Sbjct: 3 GDRLKELREEKEFTQEELGKFLNVSRQTISGYESGAIEPSISNLVKIANIFNVSLDYLLC 62 Query: 76 VSPTVCSDISSEENNVMDFIS 96 + + + N + Sbjct: 63 RTKERYNLNLENKKNKELLLD 83 >gi|308187276|ref|YP_003931407.1| LexA repressor [Pantoea vagans C9-1] gi|308057786|gb|ADO09958.1| LexA repressor [Pantoea vagans C9-1] Length = 210 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 7/129 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIRLRR L ++Q++L + + ++ + ++EK L ++E L ++ Sbjct: 6 LGDRIRLRRKSLQLTQKQLAQQVKVSHVAISQWEKEETLPRGENLLRLAEALGCTPAYLI 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK-Y 133 D V S+ S + + +S D Q ++D + + + + S++ Sbjct: 66 DGDGPVFSENSWAGLHQIPLLSQRDVAQ------WLNDASSVRHELLMHNDMALSQQSFA 119 Query: 134 RTIEEECMV 142 +EE+ M Sbjct: 120 IRVEEQAMT 128 >gi|117918776|ref|YP_867968.1| XRE family transcriptional regulator [Shewanella sp. ANA-3] gi|117611108|gb|ABK46562.1| transcriptional regulator, XRE family [Shewanella sp. ANA-3] Length = 191 Score = 51.7 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 46/134 (34%), Gaps = 5/134 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K G++ + + E+G + + L I+ + Sbjct: 4 INSYLAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S F + +P + + + +T L + + R +++ Sbjct: 64 STFLEPTPESQGALFRNADALRQKPATDGML-----VASLFPFEPRFGFEMFELTLLPHY 118 Query: 131 KKYRTIEEECMVEQ 144 ++ E + E Sbjct: 119 ERLSEPHEAGVTEH 132 >gi|331267170|ref|YP_004326800.1| XRE family transcriptional regulator [Streptococcus oralis Uo5] gi|326683842|emb|CBZ01460.1| XRE family transcriptional regulator [Streptococcus oralis Uo5] Length = 165 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 33/81 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + D Sbjct: 61 LLLDENSEKTSTEVILEEDKD 81 >gi|323343150|ref|ZP_08083381.1| transcription regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463214|gb|EFY08409.1| transcription regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 136 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 33/83 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R ++Q+K+ + L ++ Q V +E+G A L ISE P+ Sbjct: 1 MKLSDNLKRLREENALTQDKVAQSLNVSRQAVSNWEQGKRYPDAIMLIQISEFYGVPVDD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 + ++ + + Sbjct: 61 LLKSDRDYAKALVIDKARFEEVL 83 >gi|182625431|ref|ZP_02953203.1| LexA repressor [Clostridium perfringens D str. JGS1721] gi|177909271|gb|EDT71729.1| LexA repressor [Clostridium perfringens D str. JGS1721] Length = 358 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 50/125 (40%), Gaps = 4/125 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R +SQ +L E LG+ + YE+ L +S+++ I ++ Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLIQLSKLMNCSIDSLLGLN 71 Query: 78 --PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 +D+++ + + FI + + F ++ +R + + + S+K+ Sbjct: 72 HPNETTNDLNNLDLSKKIFILNKLIEKNTQSFNDLETSNIRNA--RMFKELEMSKKRTER 129 Query: 136 IEEEC 140 + E Sbjct: 130 MFNEL 134 >gi|284006480|emb|CBA71741.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 96 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 43/85 (50%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + IN+GK I+ +R G+S E L + +G++ Q + +YE+GVN + + L I++ L P Sbjct: 2 SISINIGKMIKFKRKEKGLSGELLAKKIGVSQQPLSRYERGVNDIKVNTLYSITQALNIP 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDF 94 I FF S +F Sbjct: 62 IDSFFAELIENESKKKQSNAQSDEF 86 >gi|83590661|ref|YP_430670.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573575|gb|ABC20127.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 252 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 47/113 (41%), Gaps = 2/113 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R G++Q +L G++ + + E+G + L+ + VL+ +F Sbjct: 138 LGHKLRQAREERGLTQAELARAAGVSAGLIGQIEQGKVQPSLKTLERVGAVLDISPCYFI 197 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI--IELVRS 125 V ++ + + P + R ++ ++R + I+L + Sbjct: 198 ADDAGVDEVLNQMSPELRQLLIEPQVQSVLRLICNCNESELRFILNFIQLYKR 250 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 26/71 (36%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKRIR R G S + L + G++ + + E+G R L ++ L P + Sbjct: 5 GKRIRELREERGYSLQDLAQRAGVSVSYLSEIERGAKRPSLKTLDKVARALNLPREQLIE 64 Query: 76 VSPTVCSDISS 86 Sbjct: 65 TGGEGGLAPGE 75 Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 28/56 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+RIRL R G + L E GI+ + + E+G L+ I+ LE P+S Sbjct: 74 GERIRLLRERAGKNLNTLAEAAGISVSYLSEIERGNVYPAIDTLKKITAALEVPLS 129 >gi|293402337|ref|ZP_06646474.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304184|gb|EFE45436.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 286 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 2/106 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV ++ + + GK I R ++Q +L E L IT + V K+E G + +S + Sbjct: 1 MVKGERSMDQIKT--GKFIARCRKEKKLTQAQLAERLSITDRAVSKWETGKSMPDSSIML 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + ++L ++ + + + + + D + + Sbjct: 59 ELCKLLGITVNELLSGEKVTMDSLERKADENLIALKRKDENNIAKN 104 >gi|189439596|ref|YP_001954677.1| putative transcriptional regulator [Bifidobacterium longum DJO10A] gi|317481901|ref|ZP_07940928.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] gi|189428031|gb|ACD98179.1| Hypothetical transcriptional regulator [Bifidobacterium longum DJO10A] gi|316916692|gb|EFV38087.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] Length = 161 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ I++ R G++Q + L +T Q + ++EKG ++ IS E P++ Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMAR 60 Query: 73 FFDVSPTV 80 ++ Sbjct: 61 LMEMPDNG 68 >gi|167840953|ref|ZP_02467637.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia thailandensis MSMB43] Length = 191 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 47/116 (40%), Gaps = 6/116 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V ++G ++R R LG++ ++ G++ + + E+G + L I+ L + Sbjct: 11 VAASIGNKMRALRQRLGLTLDEAAAAAGLSKPFLSQVERGRATPSITSLVGIARALGVTM 70 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +F D S +E ++ F ++ ++ +++ ++ + Sbjct: 71 QYFVDAPTEARSVCRNEALRYFSLANS------TNAFARLTNLVDGRQLDAILVRM 120 >gi|114800095|ref|YP_759955.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114740269|gb|ABI78394.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 479 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 16/150 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K+ +G R+R R LG++Q ++ E LG++ + E + A+ L Sbjct: 1 MAERKEK-----TLIGPRVRRLRRTLGITQAQMAEDLGVSASYINLIEANQRPISANLLL 55 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ--K 118 ++ V + IS E + P G + R + Sbjct: 56 TLARVYDFDISDVGGAGDARLVSELMEVVRDPVLEAGPVGKNDVEDMVNASPDIARAFVQ 115 Query: 119 IIELVRSIV---------SSEKKYRTIEEE 139 + + R + ++++ + EE Sbjct: 116 LYDKYRELALRTYSDNNPLTDREKVELLEE 145 >gi|90417956|ref|ZP_01225868.1| conserved hypothetical protein with helix turn helix motif [Aurantimonas manganoxydans SI85-9A1] gi|90337628|gb|EAS51279.1| conserved hypothetical protein with helix turn helix motif [Aurantimonas manganoxydans SI85-9A1] Length = 193 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 38/78 (48%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +++ N V +VG+++R R + +S ++L +G + + K E G + L+ + + Sbjct: 2 QQMRNSVPQDVGRKLRHMRNLHNLSLKQLAATVGCSESMLSKVETGRVNPTLTMLRKLVD 61 Query: 65 VLESPISFFFDVSPTVCS 82 L I+F F+ + Sbjct: 62 ALGINIAFLFEPQDEDAA 79 >gi|167767646|ref|ZP_02439699.1| hypothetical protein CLOSS21_02179 [Clostridium sp. SS2/1] gi|167710663|gb|EDS21242.1| hypothetical protein CLOSS21_02179 [Clostridium sp. SS2/1] gi|291560781|emb|CBL39581.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 204 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R G+SQE+L + +G++ Q V K+E + ++ +S+ + Sbjct: 6 RIQYLRKSKGISQEELADKVGVSRQAVSKWESEQSTPDLEKIIIMSDFFGVTTDYILKGI 65 Query: 78 PTVCSDISSEEN 89 V + Sbjct: 66 EPVADKEQKNKE 77 >gi|291525583|emb|CBK91170.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291528262|emb|CBK93848.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 167 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 43/98 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R + M+Q++L + GI ++KYE G +LQ I+E L ++ F Sbjct: 7 IGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGERNPKPDQLQKIAEALGISVTVFL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 D SD+ S + + S ++ I Sbjct: 67 DYDINTVSDVLSLVMKLNEQSSLKISADKDKDGNYIPS 104 >gi|282865716|ref|ZP_06274766.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559360|gb|EFB64912.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 199 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 4/85 (4%) Query: 2 VGNKKIPNP----VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 + K +P V VG R+R R G++ L E GI+ + + E G R Sbjct: 1 MKEKSQEDPELDAVLTGVGPRLRRLRKDRGVTLAALAEATGISVSTLSRLESGGRRPSLE 60 Query: 58 RLQHISEVLESPISFFFDVSPTVCS 82 L I+ E P+ P Sbjct: 61 LLLPIARAHEVPLDDLVGAPPPGDP 85 >gi|299820781|ref|ZP_07052670.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] gi|299817802|gb|EFI85037.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] Length = 111 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 1/109 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G +IR R G SQEKL + L + Q V +YE G + L ++++ + Sbjct: 3 LNKYIGNKIRFFREENGYSQEKLAQLLRTSRQTVSRYENGDRKASQDVLYELAQLFGKSM 62 Query: 71 SFFFDVSP-TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 FF + +D T + L+ +I++ R K Sbjct: 63 DDFFPPREIDPPNKNGLTIAAHIDDDVTEEELRDILAYIEMKKRLHRGK 111 >gi|225568854|ref|ZP_03777879.1| hypothetical protein CLOHYLEM_04933 [Clostridium hylemonae DSM 15053] gi|225162353|gb|EEG74972.1| hypothetical protein CLOHYLEM_04933 [Clostridium hylemonae DSM 15053] Length = 138 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 8/132 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN I + +R R ++Q+ L E L I+ Q YE L +++ Sbjct: 1 MPN---IQLANNLRYLRKQNKLTQKDLSEMLNISRQAYSNYETSKRTPDLDSLLYLAGFY 57 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ---IDDVKVRQKIIELV 123 + S + + + P L +++ + + ++ +II + Sbjct: 58 NVNLDSLVLGSLPSPDQADAAASESIAEQKIPYTLSVDKNTGNSIYLTEEEL--EIITKI 115 Query: 124 RSIVSSEKKYRT 135 R++ K+ T Sbjct: 116 RTLSRENKQIIT 127 >gi|330447298|ref|ZP_08310948.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491489|dbj|GAA05445.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 112 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 34/88 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +IR R G++Q + + LG+ Q E G L +I+++ +S+F Sbjct: 7 KIREAREWKGITQVAMAKQLGVARQTYLDLESGKTEPRVLMLLNIAKITGRSLSWFLYDD 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNR 105 + + + + +P ++ Sbjct: 67 GNPEYGDINRLSMLYAQMPSPLRYKMVE 94 >gi|257877436|ref|ZP_05657089.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811602|gb|EEV40422.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus EC20] Length = 201 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 37/79 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+++R R+ ++QE+LGE +T + + E+ ++ I EVL Sbjct: 20 MNMEIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTP 79 Query: 71 SFFFDVSPTVCSDISSEEN 89 FF + EE+ Sbjct: 80 EEFFREENAQHQVVYREED 98 >gi|227553220|ref|ZP_03983269.1| transcriptional regulator [Enterococcus faecalis HH22] gi|307291409|ref|ZP_07571293.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0411] gi|312904166|ref|ZP_07763334.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0635] gi|227177586|gb|EEI58558.1| transcriptional regulator [Enterococcus faecalis HH22] gi|306497640|gb|EFM67173.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0411] gi|310632642|gb|EFQ15925.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0635] gi|315029956|gb|EFT41888.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX4000] Length = 107 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 1/103 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R ++Q + LG+ YE+G I++ + + Sbjct: 3 GTRLTELRKQKKLTQTDVANALGVARTTYSSYEQGRRTPDIDIQNKIADYFNVSLDYLHG 62 Query: 76 VSPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDDVKVRQ 117 + +S ++ V I ++N ID +K R Sbjct: 63 RESFEDTSLSKKQLTVAAHIDDDVSDTEMNEILSFIDYIKKRD 105 >gi|126700737|ref|YP_001089634.1| putative transcriptional regulator [Clostridium difficile 630] Length = 144 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 29/69 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + ++ R I +QE+L E L ++ Q + K+E G + ++++ + Sbjct: 4 MINENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDICSCIKLAKLYNVKLDDL 63 Query: 74 FDVSPTVCS 82 + S Sbjct: 64 VNHSEEKTG 72 >gi|282601309|ref|ZP_06257987.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282569451|gb|EFB74986.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 117 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 5/102 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG+R++ R +G SQ K+ + LG T + +YE G + + ++ + + + Sbjct: 2 IEVGRRLKALRESIGFSQVKMAQALGTTQSSINRYENGQSSPSVELFRRYADYFDVSLDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 F +D E + P+ +L R+ D + Sbjct: 62 IF-----ARTDKPQGETYHFKPKAAPEREELRRFIEMCFDPQ 98 >gi|260844262|ref|YP_003222040.1| putative phage repressor CI [Escherichia coli O103:H2 str. 12009] gi|257759409|dbj|BAI30906.1| putative phage repressor CI [Escherichia coli O103:H2 str. 12009] Length = 229 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 3/110 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI G +Q +L LG++ Q VQ + G + +L H+SE+ P S+F Sbjct: 9 NRIAAMLKAKGWTQAQLARKLGVSAQSVQYWTTGKTFPRSDKLAHLSEISGYPQSWFLGE 68 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + D + L+ F D VR +I++VRSI Sbjct: 69 DSSPTFSSQEKHQTRTDSV---VFNVLDVEFSCGDGTHVRGDLIDVVRSI 115 >gi|242237765|ref|YP_002985946.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242129822|gb|ACS84124.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 144 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRI R G++Q +L + L ++ Q VQ +E G R+ S L ++ L + Sbjct: 28 ELGKRITALRKDAGLTQVQLAQALNVSQQAVQSWESGRRRIQISALPAVARQLSVSLDAL 87 Query: 74 FDVSPTVCS 82 S T Sbjct: 88 LGDSHTPPP 96 >gi|228906769|ref|ZP_04070639.1| hypothetical protein bthur0013_9460 [Bacillus thuringiensis IBL 200] gi|228852885|gb|EEM97669.1| hypothetical protein bthur0013_9460 [Bacillus thuringiensis IBL 200] Length = 149 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 31/78 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ + I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKKLAYP 82 >gi|209967957|ref|YP_002265383.1| putative peptidase, S24-like [Aliivibrio salmonicida LFI1238] gi|208011481|emb|CAQ81944.1| putative peptidase, S24-like [Aliivibrio salmonicida LFI1238] Length = 205 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R+ G+SQE L E + +T + ++E G + L I ++ + Sbjct: 4 IGERIKSLRLNQGLSQESLAEKINVTKSTISQWEVGKAQPKNKNLLSIVTFFDTTYEYLK 63 Query: 75 DVSP 78 Sbjct: 64 GGGE 67 >gi|188492663|ref|ZP_02999933.1| regulatory protein [Escherichia coli 53638] gi|188487862|gb|EDU62965.1| regulatory protein [Escherichia coli 53638] gi|315615351|gb|EFU95983.1| helix-turn-helix family protein [Escherichia coli 3431] Length = 229 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 3/110 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI G +Q +L LG++ Q VQ + G + +L H+SE+ P S+F Sbjct: 9 NRIAAMLKAKGWTQAQLARKLGVSAQSVQYWTTGKTFPRSDKLAHLSEISGYPQSWFLGE 68 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + D + L+ F D VR +I++VRSI Sbjct: 69 DSSPTFSSQEKHQTRTDSV---VFNVLDVEFSCGDGTHVRGDLIDVVRSI 115 >gi|168187848|ref|ZP_02622483.1| transcriptional regulator, MerR family [Clostridium botulinum C str. Eklund] gi|169294305|gb|EDS76438.1| transcriptional regulator, MerR family [Clostridium botulinum C str. Eklund] Length = 155 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 37/79 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R + ++QE+L L I+ + KYE+ + L I++ L+ ++ Sbjct: 1 MNLGEKIKKYRKLFKLTQEELAAKLEISKHTLSKYEQNQRKPNIEMLNKIAKALDVTVND 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + S EE Sbjct: 61 LMEFEELKKEVTSIEETEN 79 >gi|94989193|ref|YP_597294.1| transcriptional regulator [Streptococcus pyogenes MGAS9429] gi|94993080|ref|YP_601179.1| transcriptional regulator [Streptococcus pyogenes MGAS2096] gi|94542701|gb|ABF32750.1| transcriptional regulator [Streptococcus pyogenes MGAS9429] gi|94546588|gb|ABF36635.1| Transcriptional regulator [Streptococcus pyogenes MGAS2096] Length = 198 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 36/94 (38%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + +G++I R +SQEKL E + +++Q + +E L +S++ + + Sbjct: 2 IFMEIGQQIIRYRKQQALSQEKLAEKVYVSYQSISNWENDKTYPDIHSLLLLSQIFQVSL 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + T + L Sbjct: 62 DQLIKGDIEKMKYTITQVDKKNFKRDTKVMVTLM 95 >gi|329668140|gb|AEB94088.1| hypothetical protein LJP_1772 [Lactobacillus johnsonii DPC 6026] Length = 161 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R ++QE++ + L +T Q + +E N + I+E + Sbjct: 5 EQIKRLRKENNLTQEEMAKKLNVTRQAISNWENNRNLPDFEMIILIAETFGVSLDELILG 64 Query: 77 SP 78 Sbjct: 65 DK 66 >gi|328958145|ref|YP_004375531.1| transcriptional regulator for post-exponential-phase response [Carnobacterium sp. 17-4] gi|328674469|gb|AEB30515.1| transcriptional regulator for post-exponential-phase response [Carnobacterium sp. 17-4] Length = 180 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R+ ++QE+L E ++ + + E+ ++ I EVL Sbjct: 1 MEIGNRIKNLRIQKNLTQEELAERTNLSKGYISQVERDLSVPSMEVFFDILEVLGCSPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD + + + Sbjct: 61 FFDEKQEEQRVVYTNDEM 78 >gi|309792250|ref|ZP_07686722.1| helix-turn-helix domain-containing protein [Oscillochloris trichoides DG6] gi|308225791|gb|EFO79547.1| helix-turn-helix domain-containing protein [Oscillochloris trichoides DG6] Length = 181 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 45/104 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I R G++ +++ + G+T + + E+ + + L+ +++ ++ Sbjct: 1 MSLGQKIGRLRQERGLTLQEVSDGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVQMTH 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 FF+ + + + + +Q+ D++ R Sbjct: 61 FFEGEDSQQAGQVLTVADRVRLSLDDAPVQVYALLPPNSDLEAR 104 >gi|332653120|ref|ZP_08418865.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] gi|332518266|gb|EGJ47869.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] Length = 71 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 31/69 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R G++Q+ LG +G + Q + E+G + I++V + + F Sbjct: 3 LGNRLKELRAAKGLNQQGLGSLVGASRQTISLIERGDYNPSITLALRIAKVFGTTVDEVF 62 Query: 75 DVSPTVCSD 83 ++ Sbjct: 63 YLTEEDEEQ 71 >gi|261366797|ref|ZP_05979680.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282571333|gb|EFB76868.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 117 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 46/113 (40%), Gaps = 1/113 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VGKR++ R +G SQ K+ + LG T + +YE G + + ++ + + + Sbjct: 2 IEVGKRLKALRESIGFSQVKMAQALGSTQSSINRYENGQSSPSVELFRRYADYFDVSLDY 61 Query: 73 FFDVSPTVCSDISS-EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 F + + + + +++ + K+++ + ++ Sbjct: 62 IFARTDKPQGETYHFKPKAAPEREELRQFIEMCFDPQSPMNEKLKETLFRMME 114 >gi|269216832|ref|ZP_06160686.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] gi|269129639|gb|EEZ60723.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] Length = 200 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 31/74 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + KR+ R G+SQE++ + ++ Q V K+E + L ++ + + Sbjct: 3 IEIAKRLYEYRRASGLSQEQVAAKISVSRQAVSKWECAESSPDTDNLIALAMLYGVTVDE 62 Query: 73 FFDVSPTVCSDISS 86 P + ++ Sbjct: 63 LLFADPEKTAAETT 76 >gi|226225799|ref|YP_002759905.1| Xre family DNA binding protein [Gemmatimonas aurantiaca T-27] gi|226088990|dbj|BAH37435.1| Xre family DNA binding protein [Gemmatimonas aurantiaca T-27] Length = 145 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 42/124 (33%), Gaps = 8/124 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + GK +R R G SQE + +G+ + E+G + + I+ L I+ Sbjct: 5 VRFGKTVRRLRTNAGFSQETFADLVGMHRNYIGTVERGETNISIENIHRIARGLRITIAG 64 Query: 73 FFDVSPTVCSDISSEENN-----VMDFISTPDGLQLNR-YFIQIDDVKVRQKIIELVRSI 126 F D + + L R ++ + RQ I E + + Sbjct: 65 LFQEMEGSAEDTPRSADTAGSTRTPGDQHERERTDLLRPALDRVAEA--RQAIEEAAKHL 122 Query: 127 VSSE 130 + E Sbjct: 123 LQLE 126 >gi|239625419|ref|ZP_04668450.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|239519649|gb|EEQ59515.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 141 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 15/115 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPIS 71 + +G+RIR R G++QE+L LG+ V KYE G + + L ++E+LE Sbjct: 1 MELGERIRSLRKKKGLTQEELASKLGLQKSAVAKYENGRVTNIKRATLFKMAEILEVSPG 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 D GL + + + + R K++E V + Sbjct: 61 ELMYGKEDKGQDD--------------HGLAVLSGYYGMLNKAGRTKVLEHVHDL 101 >gi|291537380|emb|CBL10492.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 110 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 14/117 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP+D +G RI+ R + ++QE L E + ++ + + EKG+ + + L +S VL Sbjct: 2 NPID--LGVRIKQCRTMRKLTQENLAERIDVSSHYIYEIEKGLKNMSLNTLIDLSTVLNV 59 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + + + + + + + + R + +++ + Sbjct: 60 STDYLLFGTTSDTPCTDTIPQDNLALLIKD------------LSPQKRDSLADIISA 104 >gi|291167009|gb|EFE29055.1| transcriptional regulator, Cro/CI family [Filifactor alocis ATCC 35896] Length = 181 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I R GMSQE+L L ++ Q + ++E G + S + +S+V + + Sbjct: 5 EKILALRKQYGMSQEELAGKLNVSRQAISRWEMGTAQPDVSNILQLSKVFCVTTDYLLND 64 Query: 77 SPTVC 81 Sbjct: 65 ECEQE 69 >gi|261207860|ref|ZP_05922545.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566605|ref|ZP_06447025.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|260078243|gb|EEW65949.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161595|gb|EFD09475.1| conserved hypothetical protein [Enterococcus faecium D344SRF] Length = 203 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R G+SQE+L + +G++ Q V K+E + ++ +S+ + Sbjct: 6 RIQYLRKTKGISQEELADKVGVSRQAVSKWESEQSTPDLEKVIIMSDFFGVTTDYILKGI 65 Query: 78 PTVCSDISSEEN 89 V + Sbjct: 66 EPVNDKEQKSKE 77 >gi|262200762|ref|YP_003271970.1| hypothetical protein Gbro_0761 [Gordonia bronchialis DSM 43247] gi|262084109|gb|ACY20077.1| Protein of unknown function DUF2083,transcriptional regulator [Gordonia bronchialis DSM 43247] Length = 475 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 3/128 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G+SQ L + L ++ + + E + L HI+E F Sbjct: 5 YVGSRLRQLRSERGLSQVALAQTLSLSPSYLNQIEHDARPLTPKVLSHITEAFGVDAG-F 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ--IDDVKVRQKIIELVRSIVSSEK 131 FD V E + D + TP G + + Q ++ L R + Sbjct: 64 FDSQDDVRLVAELREVLLDDDVETPAGPVDAQEVSTFVATHPAMAQAMVNLHRRYRVATD 123 Query: 132 KYRTIEEE 139 + +E Sbjct: 124 QLAAATDE 131 >gi|83940972|gb|ABC48877.1| hypothetical protein [Enterococcus faecium] Length = 203 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R G+SQE+L + +G++ Q V K+E + ++ +S+ + Sbjct: 6 RIQYLRKTKGISQEELADKVGVSRQAVSKWESEQSTPDLEKVIIMSDFFGVTTDYILKGI 65 Query: 78 PTVCSDISSEEN 89 V + Sbjct: 66 EPVNDKEQKSKE 77 >gi|150018438|ref|YP_001310692.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904903|gb|ABR35736.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 226 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 35/71 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G+SQEKL E LGI+ Q V K+E G + +RL +SE + I + Sbjct: 5 EQLQTLRKAKGLSQEKLAEFLGISRQSVAKWEVGQSYPDIARLIALSEFFKVSIDKLVND 64 Query: 77 SPTVCSDISSE 87 C E Sbjct: 65 YEENCRLSIEE 75 >gi|254190407|ref|ZP_04896915.1| probable transcription regulator protein [Burkholderia pseudomallei Pasteur 52237] gi|157938083|gb|EDO93753.1| probable transcription regulator protein [Burkholderia pseudomallei Pasteur 52237] Length = 109 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 32/84 (38%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+ I +GKRI+ R + SQE L + + E+GV L +I L Sbjct: 13 PAPISIALGKRIKQCRHAVDKSQETLAFEAHVDRTYISAIERGVANPSVETLANICHALN 72 Query: 68 SPISFFFDVSPTVCSDISSEENNV 91 +S F V + E Sbjct: 73 VTLSELFAPLDGVSLKPTGERRAN 96 >gi|329890293|ref|ZP_08268636.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845594|gb|EGF95158.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 188 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 28/80 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R LG+SQ L G+ V E G L+ + + + FF Sbjct: 12 IGPRLRALRDRLGLSQRALARKAGVPSSTVSLVESGRTSPSVGSLKRLLDAAGISLGDFF 71 Query: 75 DVSPTVCSDISSEENNVMDF 94 + + + D Sbjct: 72 SSEFETPTKYFYRHDELTDI 91 >gi|312794292|ref|YP_004027215.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181432|gb|ADQ41602.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 144 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 1/129 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI R G ++ KL E G++ + + E+G+ + + +++I ++ Sbjct: 1 MDIGKRIVELREKYGFTRYKLSELSGVSQSALSEIERGIKQPTITTIENICRAFNLTLAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF N + +P +QL F+Q + +L+ K Sbjct: 61 FFAEKEPEIPPEVRSLINTAANL-SPTQIQLLDSFLQTFQPGRIVFLDDLLPEAAELIKI 119 Query: 133 YRTIEEECM 141 + +++E + Sbjct: 120 TKKLDKEKI 128 >gi|255655662|ref|ZP_05401071.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451664|ref|ZP_06893397.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296878908|ref|ZP_06902908.1| MerR family transcriptional regulator [Clostridium difficile NAP07] gi|296259495|gb|EFH06357.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296430180|gb|EFH16027.1| MerR family transcriptional regulator [Clostridium difficile NAP07] Length = 184 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I+VG +IR R +S L + ++ + + E+ + + IS+ L+ I Sbjct: 1 MNIDVGSKIRSLRKSKNISISTLAKNSDLSTGLISQIERNMVVPSIVAMWKISKALDINI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +FF+ SDI ++NN ++ F ++ + K IE + Sbjct: 61 GYFFEEIGREDSDIVVKKNNRKKIVTNDST-----KFYELLVPNLSGKKIEFI 108 >gi|306834504|ref|ZP_07467617.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304423306|gb|EFM26459.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 157 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++Q++L + + ++ V ++E G ++ + Q +++ + + Sbjct: 2 NRLKELRKEKKLTQKELADKINVSKITVLRWENGERQIKPDKAQQLADFFGVSVGYLLGY 61 Query: 77 SP 78 S Sbjct: 62 SE 63 >gi|75910246|ref|YP_324542.1| molybdate metabolism transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703971|gb|ABA23647.1| transcriptional regulator of molybdate metabolism, XRE family [Anabaena variabilis ATCC 29413] Length = 376 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DIN+ I+ R LGMSQ+ L G+T Q + E G + +++ L + Sbjct: 3 LDINICNNIKSIRTRLGMSQQDLANIAGVTRQTISGVESGQYAPSVAITLRLAKALGCQV 62 Query: 71 SFFFDVSPTVCS 82 F + + Sbjct: 63 ENLFWLEDDLPE 74 >gi|332671809|ref|YP_004454817.1| helix-turn-helix domain-containing protein [Cellulomonas fimi ATCC 484] gi|332340847|gb|AEE47430.1| helix-turn-helix domain protein [Cellulomonas fimi ATCC 484] Length = 221 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 7/106 (6%) Query: 10 PVDIN-----VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P D+ VG R+R R G++ ++ + G++ + + E G R L ++ Sbjct: 26 PTDVEAALEGVGSRLRALRQDRGLTLAQVADATGVSLSTLSRLESGGRRPTLELLLPLAR 85 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVM--DFISTPDGLQLNRYFI 108 + P+ D T + + F+ R + Sbjct: 86 EYQVPLDELVDAPATGDPRVFARPFERHGRTFVPLTRRADGARAYK 131 >gi|330719160|ref|ZP_08313760.1| transcription regulator [Leuconostoc fallax KCTC 3537] Length = 134 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +I+ R+ ++Q++L + + ++ Q V K+E G N + +SE L I Sbjct: 1 MHISNKIKQLRIENHLTQDQLAQKINVSRQSVLKWEAGTNYPNIENILALSEALNVSIDE 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|317473654|ref|ZP_07932943.1| hypothetical protein HMPREF1011_03294 [Anaerostipes sp. 3_2_56FAA] gi|316898944|gb|EFV20969.1| hypothetical protein HMPREF1011_03294 [Anaerostipes sp. 3_2_56FAA] Length = 239 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + + R G SQE+LG L ++ Q V K+E G ++L +S + + I Sbjct: 5 ENLNRLRKEKGWSQEELGNRLNVSRQTVSKWELGSTTPELNKLMELSRIFQVSIDELVGS 64 Query: 77 SPTVCS 82 S Sbjct: 65 SNAPAE 70 >gi|312794333|ref|YP_004027256.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181473|gb|ADQ41643.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 145 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 8/144 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N + +G +I+ R G + +LG G+ + + E+G + + L I++ L Sbjct: 3 KKNKIAKALGLKIKKLREEKGWTINQLGLYAGVNPTSIMRAERGESELSLGNLLRIAKAL 62 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI-------DDVKVRQKI 119 + ++ + S + EE + TPD ++ + + D V+Q I Sbjct: 63 KVDLNTLVEESMEQIV-LGDEELVPNEKDKTPDIYEIIKKAENLNFKGIPVTDPDVKQAI 121 Query: 120 IELVRSIVSSEKKYRTIEEECMVE 143 +E + + + K +T E+ + E Sbjct: 122 VEAITFAIRLKAKEKTQEDNEIKE 145 >gi|299822098|ref|ZP_07053984.1| DNA-binding protein [Listeria grayi DSM 20601] gi|299815627|gb|EFI82865.1| DNA-binding protein [Listeria grayi DSM 20601] Length = 133 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 50/122 (40%), Gaps = 8/122 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R +Q++L E + +T + KYE G +R L ++E L + F Sbjct: 19 MEFGQKVAQLRKKKRFTQKQLAERIDVTPSTISKYEHGTHRPPVFILAKLAEELGTTTDF 78 Query: 73 FFDV-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + + + + + L+L + + ++++ + R + + + Sbjct: 79 LLEDVAGLREKNSVNAFPLIGNPELEKWYLELPYTYSE-------EQLLMMKRIMEAIDH 131 Query: 132 KY 133 K Sbjct: 132 KK 133 >gi|218135227|ref|ZP_03464031.1| hypothetical protein BACPEC_03132 [Bacteroides pectinophilus ATCC 43243] gi|217990612|gb|EEC56623.1| hypothetical protein BACPEC_03132 [Bacteroides pectinophilus ATCC 43243] Length = 167 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 37/72 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R + M+Q++L + GI ++KYE G +LQ I+E L ++ F Sbjct: 7 IGSKIQKYRKLKDMTQDELSKQSGIYLSTIKKYESGERNPKPDQLQKIAEALGISVTVFL 66 Query: 75 DVSPTVCSDISS 86 D SD+ S Sbjct: 67 DYDINTISDVLS 78 >gi|169333724|ref|ZP_02860917.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis DSM 17244] gi|169259573|gb|EDS73539.1| hypothetical protein ANASTE_00108 [Anaerofustis stercorihominis DSM 17244] Length = 197 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++R R GM+Q L L + + KYE LQ IS + I + + Sbjct: 3 GEKLRSLRKEHGMTQVDLANALDLDKSSIAKYESAGIIPSVDTLQKISALFNVSIDYLLN 62 >gi|148263396|ref|YP_001230102.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396896|gb|ABQ25529.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 174 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 6/130 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G R++ RM ++Q++L + + + + K E+G L ISE L P+ Sbjct: 29 LEIGSRLKRLRMERSLTQKELAVRVSGGLDYTYIGKIERGEQLPSLKILLKISEALSVPV 88 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI--VS 128 + FF S + + +S G +L R ++ +IE+++ + Sbjct: 89 ASFFQDEAVAAVSDISS-SELRYLVSEETGRELVRAL-RLVHKDDLPLLIEIIQVLGRHR 146 Query: 129 SEKKYRTIEE 138 + + +T EE Sbjct: 147 NTAQKKTYEE 156 >gi|145299927|ref|YP_001142768.1| DNA-binding transcriptional repressor PuuR [Aeromonas salmonicida subsp. salmonicida A449] gi|142852699|gb|ABO91020.1| transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 187 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 53/122 (43%), Gaps = 7/122 (5%) Query: 7 IPNP-VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 NP +D ++G+R+ R LG+SQ ++ E G+T + E+ + LQ + V Sbjct: 2 TANPLMDKSMGERLAATRRRLGLSQRRVAELSGLTHGAICMIEQDKVSPSVASLQKLLNV 61 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 E P+S FF + + +++ S ++L + R+++ ++ + Sbjct: 62 YELPLSRFFAEEEGRAPSVVIKAEQLIELGSQGVSMKLVH------NGNNRRQLGFMLET 115 Query: 126 IV 127 Sbjct: 116 YA 117 >gi|56419029|ref|YP_146347.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] gi|56378871|dbj|BAD74779.1| transcriptional repressor of PBSX genes [Geobacillus kaustophilus HTA426] Length = 120 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 44/118 (37%), Gaps = 6/118 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R+ ++ + + + LGIT Q KYE G ++ + ++E + Sbjct: 4 NRLKMLRLQKKLTHQDMADFLGITRQGYSKYENGQSQPDIDTINKLAEFFNVTTDYLLGR 63 Query: 77 SPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + + D +L + R++++++ + S + Sbjct: 64 TDDPTPPEQDDIPEELKDPELGLFFKELAEA-----PEERREQLLKIWEILKSEGDRK 116 >gi|15675391|ref|NP_269565.1| putative repressor [Streptococcus phage 370.2] gi|19746441|ref|NP_607577.1| repressor [Streptococcus pyogenes MGAS8232] gi|21910679|ref|NP_664947.1| putative cI-like repressor - phage associated [Streptococcus pyogenes MGAS315] gi|28876313|ref|NP_795491.1| putative cI-like repressor [Streptococcus pyogenes phage 315.3] gi|28895631|ref|NP_801981.1| repressor (phage associated) [Streptococcus pyogenes SSI-1] gi|13622576|gb|AAK34286.1| putative repressor - phage associated [Streptococcus phage 370.2] gi|19748643|gb|AAL98076.1| putative repressor [Streptococcus pyogenes MGAS8232] gi|21904881|gb|AAM79750.1| putative cI-like repressor - phage-associated [Streptococcus pyogenes phage 315.3] gi|28810880|dbj|BAC63814.1| putative repressor (phage associated) [Streptococcus pyogenes SSI-1] Length = 251 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 54/127 (42%), Gaps = 12/127 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RIR R M+Q +L E LG+ + V K+EK N L+ ++E+ + Sbjct: 3 QLGDRIRKLREGRNMTQTELSEILGMKTYTTVSKWEKNENFPKGKDLKKLAEIFNVTSDY 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 ++ + I+ + ++ + Q++ + ++K++ + + K Sbjct: 63 LLGLTDSKLGKITIQNEQP----------EIVSIYNQLEQPR-QEKVLNFANEQLEEQNK 111 Query: 133 YRTIEEE 139 +I ++ Sbjct: 112 TVSIFDK 118 >gi|332298497|ref|YP_004440419.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181600|gb|AEE17288.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 115 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 2/106 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R +SQE+L + +G++ + E G ++ I++ L+ Sbjct: 12 AIGRRIKKYRWESNISQEELADAVGVSTTHMSHIETGGTKLSLGVFVKIADALQISADLL 71 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + + SE + + L + R+++ Sbjct: 72 LNGD--RATSKLSEIDELFSASDERQSRILLEITRAAKNALDRERV 115 >gi|288573106|ref|ZP_06391463.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568847|gb|EFC90404.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 212 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 8/130 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G RI+ R ++Q++L + +G++ V +EK ++ LE+ S+ Sbjct: 5 GDRIKELRKRKQLTQDQLAQKMGVSRTTVVSWEKSKFEPDRQNTIDLAAALETTTSYLMG 64 Query: 75 -DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 P+ + ++ + GL L+ ID E + + E + Sbjct: 65 ETDDPSPQKADRQVPSGILAPMRQETGLSLDEAAALIDLPA------EDLELMEKYEDRA 118 Query: 134 RTIEEECMVE 143 ++ ++ +++ Sbjct: 119 DSVLKQKLIK 128 >gi|253755127|ref|YP_003028267.1| DNA-binding protein [Streptococcus suis BM407] gi|251817591|emb|CAZ55338.1| putative DNA-binding protein [Streptococcus suis BM407] Length = 230 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GKR++ RR+ LG SQ +L + L I +E + S L+ ++ +L+ P ++F Sbjct: 4 GKRLKERRITLGYSQSELADKLHINRSSYFNWENEKTKPNQSNLKQLAILLDVPETYF 61 >gi|169830890|ref|YP_001716872.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] gi|169637734|gb|ACA59240.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] Length = 245 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI R GMSQ+KL E + + K E G L I E + ++ Sbjct: 1 MDIGPRIARFRERAGMSQKKLAELAALDRSHISKIESGDTSPSLEALMRICESMGVTLAE 60 Query: 73 FFDVS 77 FF Sbjct: 61 FFGSD 65 >gi|319745678|gb|EFV97977.1| DNA-binding protein [Streptococcus agalactiae ATCC 13813] Length = 197 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE+L E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + T + L Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTKVMVTLM 92 >gi|259047950|ref|ZP_05738351.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175] gi|259035370|gb|EEW36625.1| conserved hypothetical protein [Granulicatella adiacens ATCC 49175] Length = 166 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 32/81 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R G SQE L E + ++ Q + K+E G ++ +S + + + Sbjct: 2 MKLAEKIYNLRKEKGWSQETLAEQIKVSRQSISKWESGQAVPEIEKIIELSTIFQVTTDY 61 Query: 73 FFDVSPTVCSDISSEENNVMD 93 T S + D Sbjct: 62 LLLDENTTKSQKIELTEDEKD 82 >gi|283796930|ref|ZP_06346083.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075340|gb|EFE12704.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 111 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 15/120 (12%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +GKR++ R LG+SQE+L E G+T + E+G++ +L + LE Sbjct: 2 IDKRIGKRVKQCRERLGISQEELAEKTGLTANYISTVERGMSFPRCEKLIILLNGLEVSA 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F + S +L+ + + +++I+++V ++ E Sbjct: 62 DAIFCDVLEHSTSYKSS--------------ELSEKLASL-SPQAQKRILQMVELMIQQE 106 >gi|167590249|ref|ZP_02382637.1| putative transcription regulator protein [Burkholderia ubonensis Bu] Length = 217 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 32/90 (35%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V+ + +R+R R G + + L G++ + E+G A L ++ L Sbjct: 13 SDVNERIARRVRALRATRGHTLDALAARSGVSRSMISLIERGAASPTAVVLDKLAAGLGV 72 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTP 98 ++ FD +P P Sbjct: 73 SLASLFDGAPDDAPAQPLVRRAQQAQWRDP 102 >gi|94994722|ref|YP_602820.1| Cro/CI family transcriptional regulator [Streptococcus phage 10750.3] gi|94548230|gb|ABF38276.1| Transcriptional regulator, Cro/CI family [Streptococcus phage 10750.3] Length = 271 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 54/127 (42%), Gaps = 12/127 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RIR R M+Q +L E LG+ + V K+EK N L+ ++E+ + Sbjct: 23 QLGDRIRKLREGRNMTQTELSEILGMKTYTTVSKWEKNENFPKGKDLKKLAEIFNVTSDY 82 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 ++ + I+ + ++ + Q++ + ++K++ + + K Sbjct: 83 LLGLTDSKLGKITIQNEQP----------EIVSIYNQLEQPR-QEKVLNFANEQLEEQNK 131 Query: 133 YRTIEEE 139 +I ++ Sbjct: 132 TVSIFDK 138 >gi|75910258|ref|YP_324554.1| molybdate metabolism transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703983|gb|ABA23659.1| transcriptional regulator of molybdate metabolism, XRE family [Anabaena variabilis ATCC 29413] Length = 377 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 8/110 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R LGMSQ+ L +T Q + E G + I++ L + F + Sbjct: 9 NNLKAIRTRLGMSQQDLANIASVTRQTISGVESGQYAPSVAIALRIAKALGCQVEDLFWL 68 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNR------YFIQIDDVKVRQKII 120 L L R + + RQ +I Sbjct: 69 DQD--LPTIEAVLTKPIPADQSIRLSLARVGGQWVAYPLLGKDAFRQDMI 116 >gi|27381826|ref|NP_773355.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27354995|dbj|BAC51980.1| blr6715 [Bradyrhizobium japonicum USDA 110] Length = 210 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + VD +G+ +RL R G+S + + G++ + + E+ L+ +S L+ Sbjct: 20 DAVDQRLGETVRLLRQRAGLSIQDVANKTGLSNGMISQLERARAMPSIRTLRLLSIALDV 79 Query: 69 PISFFFDVSPTVC 81 PIS+FF+ + Sbjct: 80 PISYFFETTDPGD 92 >gi|296118462|ref|ZP_06837041.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306] gi|295968603|gb|EFG81849.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306] Length = 469 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 3/120 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R +SQ L LG++ V + E V + L I+EV +FF Sbjct: 5 YVGSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + TP + +L+ + V + ++++ R ++ K Sbjct: 65 SRDDDSRLLAEIQDVVQDKELCPTPVEFQELSELVY--NHPSVARIMVDIHRRYRNARDK 122 >gi|222098975|ref|YP_002533543.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana DSM 4359] gi|221571365|gb|ACM22177.1| Cupin 2, conserved barrel domain protein [Thermotoga neapolitana DSM 4359] Length = 188 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R+ G++QE+L E ++ + + E L+ I E L + + Sbjct: 13 VRIGEKLKKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKH 72 Query: 73 FFDVSPTVCSDISSEEN 89 FF EE Sbjct: 73 FFSDFEEERVVFKKEER 89 >gi|83594673|ref|YP_428425.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577587|gb|ABC24138.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 125 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 5/120 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++IR R G++Q +L LG + + + +E+G L +++VL + F Sbjct: 6 QIGRKIRTLRERRGLTQSQLASLLGKSGETISNFERGKVVTSIQTLDQMAKVLNVRLMDF 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 FD + + + + Q R + + + + L + S ++ Sbjct: 66 FDG-----VAVGAADRQHRAERARSSHAQTVRNAADLLPEEDLEILAGLATLLESRRRRE 120 >gi|288553474|ref|YP_003425409.1| putative transcriptional regulator XRE [Bacillus pseudofirmus OF4] gi|288544634|gb|ADC48517.1| putative transcriptional regulator XRE [Bacillus pseudofirmus OF4] Length = 188 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 50/136 (36%), Gaps = 13/136 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R+ G S + L + ++ + + E+G + L I++ L + F Sbjct: 10 IGVRLKALRVEQGYSLDHLAQITTVSKPMLGQIERGESNPTVGTLWKIAKGLNVSFTSFL 69 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR-SIVSS---- 129 + + + EE + G + K K EL S+ Sbjct: 70 EEEQDAVTVVKKEEIEPL------TGHDEAFKVYPLF-PKPLNKPFELFSFSLAKDSSYV 122 Query: 130 -EKKYRTIEEECMVEQ 144 E + +EE +VE+ Sbjct: 123 SEPHQKGVEEYLVVEE 138 >gi|223984183|ref|ZP_03634332.1| hypothetical protein HOLDEFILI_01625 [Holdemania filiformis DSM 12042] gi|223963841|gb|EEF68204.1| hypothetical protein HOLDEFILI_01625 [Holdemania filiformis DSM 12042] Length = 321 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R M+Q+ + +G+T Q + +E+ + L+ I ++ ++ Sbjct: 4 LGEKIAGLRQEKNMTQQAFADVMGVTRQAISNWERNKTEPDVAALKKIGQIFGVDMNDLL 63 Query: 75 DV 76 Sbjct: 64 TD 65 >gi|75764621|ref|ZP_00744064.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899709|ref|ZP_04063958.1| hypothetical protein bthur0014_9250 [Bacillus thuringiensis IBL 4222] gi|74487893|gb|EAO51666.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228859941|gb|EEN04352.1| hypothetical protein bthur0014_9250 [Bacillus thuringiensis IBL 4222] Length = 149 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 31/78 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ + I Sbjct: 5 ERLKEEREKRNWSQNDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFDITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKKLAYP 82 >gi|330685264|gb|EGG96925.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU121] Length = 189 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ +I+L R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNISHQIKLCRENKGYSQEYLAEKLYVSRQTISNWENERSYPDVHNLIMMCELFNVSLDD 60 Query: 73 FFDVS 77 Sbjct: 61 LVQGE 65 >gi|257141046|ref|ZP_05589308.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 193 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 57/146 (39%), Gaps = 11/146 (7%) Query: 1 MVGNKKIPNPVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 MV + + P + + +G +IR R L + ++ GI+ + + E+G+ + Sbjct: 1 MVPSTENTRPANAGVALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITS 60 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 L I+ L + +F + S ++ F + F ++ +V ++ Sbjct: 61 LAGIAHALGVTVQYFVETPSEERSVCRGDQLRFFSFADS------ANLFARLTNVPEGRQ 114 Query: 119 IIELVRSIVSSEKKYR---TIEEECM 141 + ++ + +K+ EE + Sbjct: 115 LEAILVRMPPGQKRSEVTTHAGEEFL 140 >gi|225420264|ref|ZP_03762567.1| hypothetical protein CLOSTASPAR_06607 [Clostridium asparagiforme DSM 15981] gi|225041081|gb|EEG51327.1| hypothetical protein CLOSTASPAR_06607 [Clostridium asparagiforme DSM 15981] Length = 177 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R++ G++QE+L + ++ + + E+ + + L I + L + I Sbjct: 1 MQIGAKLKELRILKGLTQEELADRTELSKGFISQLERDLTSPSIATLMDILQCLGTSIGE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF+ T I + + + I T ++ Sbjct: 61 FFN--ETQEEQIVFSKQDYFEKIDTELHNEI 89 >gi|83717916|ref|YP_440408.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83651741|gb|ABC35805.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 236 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 57/146 (39%), Gaps = 11/146 (7%) Query: 1 MVGNKKIPNPVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 MV + + P + + +G +IR R L + ++ GI+ + + E+G+ + Sbjct: 44 MVPSTENTRPANAGVALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITS 103 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 L I+ L + +F + S ++ F + F ++ +V ++ Sbjct: 104 LAGIAHALGVTVQYFVETPSEERSVCRGDQLRFFSFADS------ANLFARLTNVPEGRQ 157 Query: 119 IIELVRSIVSSEKKYR---TIEEECM 141 + ++ + +K+ EE + Sbjct: 158 LEAILVRMPPGQKRSEVTTHAGEEFL 183 >gi|312868567|ref|ZP_07728762.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311095864|gb|EFQ54113.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 204 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ +R LG++Q + L +T Q + +E+G + S L +SEV + + Sbjct: 6 QIKQQRQQLGLTQADVASQLFVTRQTISNWEQGKSYPDLSMLVKLSEVYQVSLDSLLKGD 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + + + + + L F I D Sbjct: 66 AQLKNYLEQGKAYNAFSVFKGLFFILYGLFFLITDE 101 >gi|268609129|ref|ZP_06142856.1| hypothetical protein RflaF_06476 [Ruminococcus flavefaciens FD-1] Length = 163 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 46/111 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK ++ R G +QE LGE +G+T + V ++E G L +S++ + I+ Sbjct: 4 VMIGKFLKELRKEKGYTQETLGEKIGVTNKTVSRWETGTYIPPVECLVMLSDIYDVSINE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 S+ + + + + + ++ V II +V Sbjct: 64 IVAGQRLSQSEFNDKAEENLSEALRLSENEYKQREKKLTIVMAVSTIIAMV 114 >gi|257460926|ref|ZP_05626027.1| putative transcriptional regulator [Campylobacter gracilis RM3268] gi|257442257|gb|EEV17399.1| putative transcriptional regulator [Campylobacter gracilis RM3268] Length = 233 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G RI+ R G++Q +L GI+ +Q YE + +L IS+VL+ I F Sbjct: 1 MNLGLRIKNLREERGLTQLELANLSGISRASIQLYEADKVEIPVKKLSDISKVLDVDIDF 60 Query: 73 F 73 F Sbjct: 61 F 61 >gi|254393361|ref|ZP_05008507.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294811335|ref|ZP_06769978.1| Putative transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326439932|ref|ZP_08214666.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197706994|gb|EDY52806.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294323934|gb|EFG05577.1| Putative transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 400 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 1/95 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+ D ++G RI R + ++Q L + G++ V K E G++ + ++ VL Sbjct: 1 MPHSQDDHIGARIADYRKLRHLTQAGLAQRAGVSRTTVAKIEAGLSPATPPIVAAVARVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 E ++ + P + + + ++ +S L Sbjct: 61 EVDVAVL-NGQPYLSELQADHLDRMIAPLSDALDL 94 >gi|167034669|ref|YP_001669900.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166861157|gb|ABY99564.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 129 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 39/122 (31%), Gaps = 12/122 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R LGM+Q G+ G+ KYE G L ++ + Sbjct: 4 IGPRLREERERLGMTQRVFGDIGGVEPNAQGKYESGERTPRVDYLAALAA-RGVDALYVL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 T + L F Q+ + + L+ + + K + Sbjct: 63 SGLRTPAPLQGLSTDESG----------LLGAFRQLSLDD-QAALWHLLGRLADNAKPRQ 111 Query: 135 TI 136 T+ Sbjct: 112 TV 113 >gi|312126654|ref|YP_003991528.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776673|gb|ADQ06159.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 105 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 14/115 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI+ R G+S KL + G+ + E G + I L + FF Sbjct: 4 VGKRIKELREQCGLSMSKLAKIAGVGQSTLSYIENGERSPTIDVIMKICNALGITLVEFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + +P +L Y ++ + ++ + + + + Sbjct: 64 GGEEKT-------------HLESPKVRELLVYAQKLSEKEL-EYLCRFLEEVSKE 104 >gi|261823778|ref|YP_003261884.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261607791|gb|ACX90277.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 188 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 5/138 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G ++ R G S + E G++ + + E+G + + L I+ L Sbjct: 1 MSDELTRRIGDTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 S F + + F + G++ F D K+R LV + Sbjct: 61 NVAFSTFIEPTLADEGVTYRS-GAGSTFSESVAGMRAVPLFPY--DEKLR--FDMLVIEL 115 Query: 127 VSSEKKYRTIEEECMVEQ 144 + + E ++E Sbjct: 116 AAGAGSTSSPHENGVIEH 133 >gi|222530394|ref|YP_002574276.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457241|gb|ACM61503.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 105 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 14/115 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI+ R G+S KL + G+ + E G + I L+ + FF Sbjct: 4 VGKRIKELREKCGLSMSKLAKIAGVGQSTLSYIENGERNPTIDVIIKICNALDITLVEFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + +P +L Y ++ + ++ + + + + Sbjct: 64 GGEEKP-------------HMESPKLQELLVYAKKLSEKEL-EYLCRFLEEVSKE 104 >gi|217973784|ref|YP_002358535.1| putative phage repressor [Shewanella baltica OS223] gi|217498919|gb|ACK47112.1| putative phage repressor [Shewanella baltica OS223] Length = 243 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR---VGASRLQHISEVLESPISF 72 GKRI RR LG+SQ+ + + +GI V +E + L ++E+L+ + Sbjct: 6 GKRIAERRKELGLSQDVVAKYVGINRVSVSNWETDGKNGTSPKGANLIALAELLKCTPEW 65 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + E N Sbjct: 66 LLNGEDEALKTENRESNAQWH 86 >gi|295108696|emb|CBL22649.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 336 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE+L LG++ Q V K+E R+ +SE+ + Sbjct: 1 MILADKITEERKKNGWSQEELANQLGVSRQAVSKWESAGAVPDLQRILQMSELFGVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + E ++ F Sbjct: 61 LLKDEMKAENITYHESTESYAEPLKKVTMENANEF 95 >gi|266619410|ref|ZP_06112345.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] gi|288869037|gb|EFD01336.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] Length = 177 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 37/68 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R++ G++QE+L + ++ + + E+ + + L I + L + I Sbjct: 1 MDIGAKLKELRILKGLTQEELADRAELSKGFISQLERDLTSPSIATLMDILQCLGTSIGE 60 Query: 73 FFDVSPTV 80 FF+ +P Sbjct: 61 FFNETPEE 68 >gi|163745956|ref|ZP_02153315.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] gi|161380701|gb|EDQ05111.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] Length = 466 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 42/128 (32%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R G++Q+ LG++ + + E V + + ++ ++ Sbjct: 9 GVKLRETRTRAGLTQKDFAARLGVSLPYLNQMENNNRPVSTNVVLALASEFRLDVTELSS 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F + R + + + L +S +++ + Sbjct: 69 GDGERLVSDLREALADPIFAGKAPPMADLRLTAS-NAPGLAHAFLALHQSYRQVQERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|154250004|ref|YP_001410829.1| cupin 2 domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154153940|gb|ABS61172.1| Cupin 2 conserved barrel domain protein [Fervidobacterium nodosum Rt17-B1] Length = 175 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 4/127 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ G +QE+L + ++ + + E L+ + VL + + Sbjct: 1 MKIGSKIKRLRLARGYTQEELADRCDLSRSFISQLESDKVSPSVETLERVLRVLGTDLKH 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF I ++N + P G++++ I+D ++ KI+EL +E++ Sbjct: 61 FFSDE---QKKIIFKKNERVPMYELPKGVKIDILMDGIEDKEIDAKIVEL-EPGSQTEQE 116 Query: 133 YRTIEEE 139 +E Sbjct: 117 DYHDGDE 123 >gi|73661421|ref|YP_300202.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72493936|dbj|BAE17257.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 155 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +I++ R ++QE+ G L I+ Q V +E L I++ + Sbjct: 4 GTQIKMIRKENQLTQEQFGNQLNISRQTVSTWENNRYLPDIEMLVEIAKTFNLSLDDLIL 63 Query: 76 VSPTVCSDISSEEN 89 + V + ++ Sbjct: 64 GNSVVKDKLVNDTK 77 >gi|25011800|ref|NP_736195.1| hypothetical protein gbs1761 [Streptococcus agalactiae NEM316] gi|77413672|ref|ZP_00789856.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|24413341|emb|CAD47420.1| Unknown [Streptococcus agalactiae NEM316] gi|77160272|gb|EAO71399.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 197 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE+L E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIYSLLLLSQIFQVSLDQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + T + L Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTKVMVTLM 92 >gi|320008066|gb|ADW02916.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 190 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 6/111 (5%) Query: 1 MV--GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M G ++ + I VG +IR RR GMS +L G+ + + E G Sbjct: 1 MTPGGERRPASSTAIAVGAQIRRRREQRGMSSAELARRAGLGKATLSQLEAGRGNPTIET 60 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 L ++ L P++ + D G +L R Sbjct: 61 LDALAIALRIPLTDLLARDTDPGPVLVP----GTDLADGEVGRELLRRISS 107 >gi|229100652|ref|ZP_04231502.1| hypothetical protein bcere0020_58240 [Bacillus cereus Rock3-29] gi|228682832|gb|EEL36860.1| hypothetical protein bcere0020_58240 [Bacillus cereus Rock3-29] Length = 142 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 33/73 (45%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++N+G +++ R SQE + +G+T Q V K+E + L +S++ E I Sbjct: 3 NMNLGSQLKKFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSDLYEVTID 62 Query: 72 FFFDVSPTVCSDI 84 S D+ Sbjct: 63 ELIKGSGDAREDL 75 >gi|331088392|ref|ZP_08337309.1| hypothetical protein HMPREF1025_00892 [Lachnospiraceae bacterium 3_1_46FAA] gi|330408267|gb|EGG87747.1| hypothetical protein HMPREF1025_00892 [Lachnospiraceae bacterium 3_1_46FAA] Length = 336 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE+L LG++ Q V K+E R+ +SE+ + Sbjct: 1 MILADKITEERKKNGWSQEELANQLGVSRQAVSKWESAGAVPDLQRILQMSELFGVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + E ++ F Sbjct: 61 LLKDEMQAENITYHESTESYAEPLKKVTMENANEF 95 >gi|325840878|ref|ZP_08167213.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325490135|gb|EGC92473.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 330 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 40/94 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I R GMSQE+L LG+T Q + +E+G+ + L ++ + E+ + Sbjct: 5 QLGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQPDLEMLMKLAAIFETDLDGL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + + + M ++ L YF Sbjct: 65 MGIKSDIKEEPVELNLKPMKWMYLTQLFSLIGYF 98 >gi|312887017|ref|ZP_07746621.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311300329|gb|EFQ77394.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 137 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 57/140 (40%), Gaps = 14/140 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ KK + ++G +IR R I G+SQ+ L IT Q V K E+ V L Sbjct: 1 MLKEKKGVGKI--HIGPKIRRLRQIKGISQKAFASELQITQQAVSKIEQSEI-VNEETLG 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+E+L + + + N V++ + ++ I +KI Sbjct: 58 KIAEILGVSMEAIVNFDDDASFNNFINTNEVIN-----QRCDVTNHYQSI------EKIT 106 Query: 121 ELVRSIVSSEKKYRTIEEEC 140 EL ++ SE + + ++ Sbjct: 107 ELYERLLKSEIEKNQLLKDI 126 >gi|300814822|ref|ZP_07095058.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511068|gb|EFK38332.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 367 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I +R G++QE+L E + +T V K+E G + L ++ + Sbjct: 4 IGENILQKRKERGITQEELAEFMMVTKASVSKWETGQSYPDILLLPKLATFFNISVDELI 63 Query: 75 DVSPTVCSD 83 P + S Sbjct: 64 GYDPDLSSA 72 >gi|225180882|ref|ZP_03734330.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] gi|225168363|gb|EEG77166.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] Length = 255 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 42/101 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+IR+ R GM+Q++L I+ V + E G + ++ IS+ L + + Sbjct: 138 GKKIRMTRETKGMTQKQLANAAQISPGLVAQLETGKVQPSLKTIERISKALSVSVCYLIL 197 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 I+ + + + P L + +D ++R Sbjct: 198 EQEDAEGIIAGITPELRELLFDPRVQMLIGHICTLDSEQLR 238 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R G++ E+LG L ++ + + E G LQ IS PIS F Sbjct: 70 GDKLRAMREEKGLTLEELGRHLDLSVTYLSEIELGERTPSIQTLQKISRYFNVPISLFLH 129 Query: 76 VSP 78 Sbjct: 130 TEG 132 >gi|293374278|ref|ZP_06620606.1| toxin-antitoxin system, antitoxin component, Xre family [Turicibacter sanguinis PC909] gi|292647111|gb|EFF65093.1| toxin-antitoxin system, antitoxin component, Xre family [Turicibacter sanguinis PC909] Length = 119 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 3/113 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKR++ R G++Q++L + I+ V YE L S+V + Sbjct: 1 MLGKRLKQLRNSAGLTQKELANKMNISSSAVSMYEADRRDPDTETLVKFSKVFNVTTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVR 124 + + D ++T G ++ F I+ D + +K+ + Sbjct: 61 L-GETSNKPLTQEHLTTINDAVNTHLGEDISIMFKDINNWDEEKIKKLKTFIE 112 >gi|254520499|ref|ZP_05132555.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226914248|gb|EEH99449.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 111 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 35/74 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G RIR R+ L ++QE+L E + ++ + + E+G + L I + L I Sbjct: 2 IYKLLGNRIRQERLKLNLTQEQLAEKVDLSTSYIGQIERGERNISLDTLVVICKSLGVTI 61 Query: 71 SFFFDVSPTVCSDI 84 + S + DI Sbjct: 62 DYLLQDSINIEEDI 75 >gi|255657067|ref|ZP_05402476.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] Length = 141 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 29/69 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + ++ R I +QE+L E L ++ Q + K+E G + ++++ + Sbjct: 1 MINENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDL 60 Query: 74 FDVSPTVCS 82 + S Sbjct: 61 VNHSEEKTG 69 >gi|255306656|ref|ZP_05350827.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 184 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I+VG +IR R +S L + ++ + + E+ + + IS+ L+ I Sbjct: 1 MNIDVGSKIRSLRKSKNISISTLAKNSDLSTGLISQIERNMVVPSIVAMWKISKALDINI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +FF+ SDI ++NN ++ F ++ + K IE + Sbjct: 61 GYFFEEIGREDSDIVVKKNNRKKIVTNDST-----KFYELLVPNLSGKKIEFI 108 >gi|126649830|ref|ZP_01722066.1| hypothetical protein BB14905_16570 [Bacillus sp. B14905] gi|126593549|gb|EAZ87494.1| hypothetical protein BB14905_16570 [Bacillus sp. B14905] Length = 180 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 39/78 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ G++QE+LGE ++ + + E+ +N L I EVL S Sbjct: 1 MQIGAKIKALRLKKGLTQEELGERTDLSKGYISQLERDLNSPSIETLFSILEVLGSTPKE 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD + +EE+ Sbjct: 61 FFDDGTPEQKVVYTEEDQ 78 >gi|291531495|emb|CBK97080.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 301 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G I+ R M+QE L E + ++ Q V K+E +L +S+ + Sbjct: 1 MSLGTNIQFYRKQKNMTQEDLAEFMNVSRQTVSKWESDTAFPETDKLITLSDYFGCTLDE 60 Query: 73 FFDVSPTV 80 S Sbjct: 61 LIKGSAEE 68 >gi|253573993|ref|ZP_04851335.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251846470|gb|EES74476.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 111 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 2/90 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRIR R +QE+L E + + + E+G + L+ I+ L+ P F Sbjct: 7 VGKRIREYRKQKNWTQEQLAEAASLHYSYIGGVERGDRNISLETLEKIAVALDVPAGDLF 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 V D + M +S+ ++ Sbjct: 67 --RTEVVLDKQQLLDEHMKLVSSRSAEEIA 94 >gi|166219126|gb|ABY85413.1| transcriptional regulator [Streptococcus suis] Length = 195 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 17/135 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R++ G+++ L L +T Q + ++E GV ++ + + +F Sbjct: 4 GSRLEELRLLNGLTRADLARELEVTEQAIWQFETGVTLPKMKNKIAMARFFQVEVDYFDA 63 Query: 76 VSPTVCSDISSEENNVMDFISTP-------------DGLQLNRYFIQIDDVKVRQKIIEL 122 V +S D + + F+ I + Q I +L Sbjct: 64 VDKNGSFSLSRIAFRNADLEAKKNIHIQMVYLEKMNQMIDYLENFVSIPN----QIIYQL 119 Query: 123 VRSIVSSEKKYRTIE 137 V SI +++ ++E Sbjct: 120 VDSIEQKLQQHESLE 134 >gi|77412137|ref|ZP_00788460.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae CJB111] gi|77161797|gb|EAO72785.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae CJB111] Length = 197 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE+L E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + T + L Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTKVMVTLM 92 >gi|300704586|ref|YP_003746189.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299072250|emb|CBJ43582.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 113 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+ + +GKR++ R SQE L + + E+G+ L +I L Sbjct: 17 PAPISVALGKRVKQCRHAADKSQETLAFEALVDRTYISSIERGIANPSVETLANICHCLG 76 Query: 68 SPISFFF 74 +S F Sbjct: 77 VTLSELF 83 >gi|254555453|ref|YP_003061870.1| transcription regulator [Lactobacillus plantarum JDM1] gi|254044380|gb|ACT61173.1| transcription regulator [Lactobacillus plantarum JDM1] Length = 180 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+RIR R+ ++QE+LGE ++ + + E + I EVL + Sbjct: 1 MDIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPAD 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|228957400|ref|ZP_04119156.1| hypothetical protein bthur0005_9210 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802278|gb|EEM49139.1| hypothetical protein bthur0005_9210 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 149 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQHDLAEKIHVSRQSVSKWETGQNYPSIEIIIHLSDLFSITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + I + + Sbjct: 65 DEELTQKIIEDSKQLAYP 82 >gi|229002961|ref|ZP_04160828.1| transcriptional regulator [Bacillus mycoides Rock3-17] gi|228758312|gb|EEM07492.1| transcriptional regulator [Bacillus mycoides Rock3-17] Length = 119 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 3/118 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ RM LG +Q++ + + I+ V E G + IS + + Sbjct: 5 IGKRIKEIRMSLGYTQQQFADNVDISKPMVSYIESGKKTPSRETVSKISNLANVSTDYIM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 +S ++ SS + +++ + F + +KI L+ + + K Sbjct: 65 GLSDNKNNEESSASDVMLEL---KHYINRMESFDEETKEFAIKKIKALISGLDIEDNK 119 >gi|300766976|ref|ZP_07076889.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179456|ref|YP_003923584.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|300495514|gb|EFK30669.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044947|gb|ADN97490.1| cro/CI family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 180 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+RIR R+ ++QE+LGE ++ + + E + I EVL + Sbjct: 1 MDIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPAD 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|254975277|ref|ZP_05271749.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092667|ref|ZP_05322145.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100772|ref|ZP_05329749.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255314404|ref|ZP_05355987.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517082|ref|ZP_05384758.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650186|ref|ZP_05397088.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683309|ref|YP_003214594.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686905|ref|YP_003218038.1| putative transcriptional regulator [Clostridium difficile R20291] gi|260209472|emb|CBA63001.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212921|emb|CBE04177.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 184 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I+VG +IR R +S L + ++ + + E+ + + IS+ L+ I Sbjct: 1 MNIDVGSKIRSLRKSKNISISTLAKNSDLSTGLISQIERNMVVPSIVAMWKISKALDINI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +FF+ SDI ++NN ++ F ++ + K IE + Sbjct: 61 GYFFEEIGREDSDIVVKKNNRKKIVTNDST-----KFYELLVPNLSGKKIEFI 108 >gi|168179867|ref|ZP_02614531.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182669352|gb|EDT81328.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 148 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 46/116 (39%), Gaps = 3/116 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+++ R +SQE + E L ++ Q V K+E ++ + +SE+ + Sbjct: 1 MSLGEKLLYLRKKASLSQEDVAEKLSVSRQTVSKWETDQTVPELNKAKLLSELYNVSYDY 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRS 125 + + I + + + + + I + +KI E+ S Sbjct: 61 LISENYISGDVTGIEMIVDEIDWTGAWSKKYPILASYPGIKGINTYSEKISEIYDS 116 >gi|148269420|ref|YP_001243880.1| cupin 2 domain-containing protein [Thermotoga petrophila RKU-1] gi|147734964|gb|ABQ46304.1| Cupin 2, conserved barrel domain protein [Thermotoga petrophila RKU-1] Length = 188 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ G++QE+L E ++ + + E L+ I E L + + Sbjct: 13 VRIGEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKH 72 Query: 73 FFDVSPTVCSDISSEEN 89 FF EE Sbjct: 73 FFSDVEEERVVFKKEER 89 >gi|28377241|ref|NP_784133.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|28270072|emb|CAD62972.1| transcription regulator [Lactobacillus plantarum WCFS1] Length = 180 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+RIR R+ ++QE+LGE ++ + + E + I EVL + Sbjct: 1 MDIGQRIRNLRIQKQLTQEELGERTDLSKGYISQLEHNQSSPSMETFFAILEVLGCAPAD 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|322375072|ref|ZP_08049586.1| putative helix-turn-helix protein [Streptococcus sp. C300] gi|321280572|gb|EFX57611.1| putative helix-turn-helix protein [Streptococcus sp. C300] Length = 165 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 32/81 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLAEKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQVLPEIEKIIELSKIFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + D Sbjct: 61 LLLDENFEKGSTAVILEEGKD 81 >gi|319950565|ref|ZP_08024474.1| transcriptional regulator, XRE family protein [Dietzia cinnamea P4] gi|319435759|gb|EFV90970.1| transcriptional regulator, XRE family protein [Dietzia cinnamea P4] Length = 195 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R M+ +L + GI+ + + E G R L ++ + Sbjct: 12 VGPRLRSLRRHRDMTLAELADKTGISPSTLSRLESGQRRPTLELLLPLARAHGVTLDHLV 71 Query: 75 DVSPTVCSDIS 85 D PT I+ Sbjct: 72 DAPPTGDPRIA 82 >gi|290957394|ref|YP_003488576.1| hypothetical protein SCAB_29171 [Streptomyces scabiei 87.22] gi|260646920|emb|CBG70019.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 388 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 13/120 (10%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ RR G SQEKL E LG+ V ++E + ++ L+ + Sbjct: 7 RLAQRRKSAGYSQEKLAERLGVERSTVVRWETAESEPQPWIRPKLAAALKVTADELQSLL 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 V + + + P + L + L I +++Y Sbjct: 67 DDVTVIQAKPSERMSYVLEHPSSVDLV-------------AVAYLHERIRQLDERYDKAP 113 >gi|229082960|ref|ZP_04215381.1| hypothetical protein bcere0023_55490 [Bacillus cereus Rock4-2] gi|228700360|gb|EEL52925.1| hypothetical protein bcere0023_55490 [Bacillus cereus Rock4-2] Length = 144 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 37/82 (45%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G +++ R SQE + +G+T Q V K+E + L +S++ E I Sbjct: 3 NMKLGSQLKKFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSDLYEVTID 62 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 S D+ ++N+ + Sbjct: 63 ELIKGSGDAREDLDKKDNDECE 84 >gi|311739935|ref|ZP_07713769.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311305008|gb|EFQ81077.1| DNA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 437 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 14/117 (11%), Positives = 41/117 (35%), Gaps = 8/117 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R G++Q + + LG++ + + E + + L +++ +F + Sbjct: 7 GARIHALRKQRGLTQVAMAKQLGLSTSYLNQLENDQRPLTVTVLMQLAQRFNLDPGYFAN 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 ++ + + L F ++ + +++ + E+ Sbjct: 67 DRDAR---TITDLRRIFPEATEDSLADLASRFPELMP-----RFVDVASRAPARERS 115 >gi|19551615|ref|NP_599617.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 469 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 14/130 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R +SQ L LG++ V + E V + L I+E +FF Sbjct: 2 GSRLRQLRRERDLSQASLAATLGLSASYVNQIEHDVRPLTVPVLLRITEAFGVDATFFSR 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII---ELVRSIVSSEKK 132 + ++ ++ ++D P ++L ++ + + +L R++V ++ Sbjct: 62 DDDSRL--LAEVQDVMLDREINPANVEL---------QELSEMVYNHPQLARAMVEMHQR 110 Query: 133 YRTIEEECMV 142 YR + ++ + Sbjct: 111 YRNVRDKFSI 120 >gi|27377584|ref|NP_769113.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27380303|ref|NP_771832.1| hypothetical protein blr5192 [Bradyrhizobium japonicum USDA 110] gi|27350728|dbj|BAC47738.1| bll2473 [Bradyrhizobium japonicum USDA 110] gi|27353467|dbj|BAC50457.1| blr5192 [Bradyrhizobium japonicum USDA 110] Length = 199 Score = 51.4 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 9/129 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +IR R+ + +L E G++ + K E+G L I+ V + F Sbjct: 14 AIGPKIRRLRLRKKLGLVQLSEHTGLSPAMLSKIERGHLFPTLPTLLRIALVFGVGLDHF 73 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI----IELVRSIVSS 129 F + + + F +D +K+ +E V+ Sbjct: 74 FREDSDRPVHAVVRKADRIRLPEKAGRTSPAYCFESLDYPVSDRKLNGYYVEFVK----- 128 Query: 130 EKKYRTIEE 138 E + E Sbjct: 129 EDEQSEPHE 137 >gi|310825925|ref|YP_003958282.1| DNA binding protein [Eubacterium limosum KIST612] gi|308737659|gb|ADO35319.1| DNA binding protein [Eubacterium limosum KIST612] Length = 113 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 32/70 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G++Q +L + +G++ + + EKG I+ + + I + + Sbjct: 43 NRIKELRKEKGLTQLQLADAVGVSTRTIISLEKGQYNPSIMLAYKIARLFGTTIEALYCL 102 Query: 77 SPTVCSDISS 86 + +++ + Sbjct: 103 EENLKNEMEN 112 >gi|257064611|ref|YP_003144283.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792264|gb|ACV22934.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 141 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 52/124 (41%), Gaps = 2/124 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR R G++Q++L +G+T V+ YE G+ +L +++ + Sbjct: 3 VGERIRALRRSAGLTQKELAASIGLTESAVRNYELGLRTPSDDQLAAMADSIGVAPEALM 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 D+ + D + + + ID + I + +S+V+ ++ Sbjct: 63 DIRVESARQALEVLFRMEDTLGLVPQSDGDSIGLGIDPEAEQAPI--MHQSLVAWKRMRD 120 Query: 135 TIEE 138 +E+ Sbjct: 121 GLED 124 >gi|83859650|ref|ZP_00953170.1| probable transcriptional regulator [Oceanicaulis alexandrii HTCC2633] gi|83852009|gb|EAP89863.1| probable transcriptional regulator [Oceanicaulis alexandrii HTCC2633] Length = 66 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 22/62 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R G SQ L + L ++ Q V E G I+ V PI FD Sbjct: 5 IKELRADRGWSQAALADKLDVSRQTVISIENGKYDPSLPLAFRIARVFGLPIETIFDDEN 64 Query: 79 TV 80 Sbjct: 65 AG 66 >gi|307591326|ref|YP_003900125.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306986180|gb|ADN18059.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 86 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K I + + I G+ I+ RR L ++QE L G+ + E G + ++ Sbjct: 1 MSEQKPIVSSIQIKFGRAIQQRRKELNLTQENLAHRTGLDRTYIANIETGKINISLRNIE 60 Query: 61 HISEVLESPISFFF 74 +++ L +S F Sbjct: 61 KLAKGLSISLSDLF 74 >gi|229829910|ref|ZP_04455979.1| hypothetical protein GCWU000342_02016 [Shuttleworthia satelles DSM 14600] gi|229791208|gb|EEP27322.1| hypothetical protein GCWU000342_02016 [Shuttleworthia satelles DSM 14600] Length = 367 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 33/90 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + I RR ++QE+L + + +T V K+E G + L ++ + Sbjct: 4 IAENIYQRRKEKNITQEELADFMMVTKASVSKWETGQSYPDILLLPKLATFFNVTVDELI 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 P + + + T +G+ Sbjct: 64 GYEPQLSLEQIKKIYEDFSKDITKNGIDEV 93 >gi|206974889|ref|ZP_03235804.1| DNA-binding protein [Bacillus cereus H3081.97] gi|222095479|ref|YP_002529539.1| hypothetical protein BCQ_1819 [Bacillus cereus Q1] gi|206746908|gb|EDZ58300.1| DNA-binding protein [Bacillus cereus H3081.97] gi|221239537|gb|ACM12247.1| conserved hypothetical protein [Bacillus cereus Q1] Length = 146 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVS 77 + Sbjct: 61 LIKGN 65 >gi|153940644|ref|YP_001392517.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|152936540|gb|ABS42038.1| putative transcriptional regulator [Clostridium botulinum F str. Langeland] gi|295320504|gb|ADG00882.1| putative transcriptional regulator [Clostridium botulinum F str. 230613] Length = 121 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 39/105 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R +SQ+ L + LG++ V E G +Q I+ I + + Sbjct: 4 LGERLKELRNEAKLSQKDLAKKLGLSSSTVGMIESGKREGNKETIQKIANFFGVSIDYLY 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + S +N +D + +Q + + I Sbjct: 64 GNDVEEITKTESLIDNFLDRLIQEGIIQDPNNIDSTTEDMILNAI 108 >gi|90962618|ref|YP_536534.1| Cro/CI family transcriptional regulator [Lactobacillus salivarius UCC118] gi|90821812|gb|ABE00451.1| Transcriptional regulator, Cro/CI family [Lactobacillus salivarius UCC118] gi|300215223|gb|ADJ79639.1| Transcriptional regulator, Cro/CI family [Lactobacillus salivarius CECT 5713] Length = 267 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R+ +Q+++ E L IT Q + YE+G+ Q ++ P+S+ + Sbjct: 2 NRIKELRVEKHKTQKEIAEFLNITEQALSYYERGLREPKLKTWQALANFFNVPVSYLQGL 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + I+ ++D F Sbjct: 62 GVSREKIINDLVEKMIDDKGNSFSSFNLLNF 92 >gi|78048175|ref|YP_364350.1| hypothetical protein XCV2619 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036605|emb|CAJ24296.1| conserved hypothetical protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 91 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 30/74 (40%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K +P + G R+ R G+SQE+L G+ + E+G + + Sbjct: 8 MPEKSMPTDPRVLFGLRLAEVRKTKGLSQERLALESGLARSYLGGVERGQRNIALLNIYR 67 Query: 62 ISEVLESPISFFFD 75 ++E L + + Sbjct: 68 LAEALGVHPTLLLE 81 >gi|257877826|ref|ZP_05657479.1| predicted protein [Enterococcus casseliflavus EC20] gi|257811992|gb|EEV40812.1| predicted protein [Enterococcus casseliflavus EC20] Length = 209 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 2/106 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ R M+Q+ L + L +T Q V K+E+ + L +S + Sbjct: 4 LGKNIKELRQSKKMTQKSLAKMLNVTPQAVSKWERNESNPDIQTLISLSNYFNVSVDEML 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + + L + + + K ++ +I Sbjct: 64 GRKRPTFFETLFSKKKGYQQM--EKTGDLIKPKDSVGEKKWKKVVI 107 >gi|210634420|ref|ZP_03298108.1| hypothetical protein COLSTE_02030 [Collinsella stercoris DSM 13279] gi|210158823|gb|EEA89794.1| hypothetical protein COLSTE_02030 [Collinsella stercoris DSM 13279] Length = 351 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 46/90 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR RR LGM+QE++ + LG++ V K+E+G+ + + ++ + E+ + Sbjct: 1 MHISEIIRSRRRELGMTQEQVAQRLGVSAPAVNKWERGICYPDITLIPSLARLFETDANT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 P + + S +D + +G + Sbjct: 61 LLSFEPELREEESLAIQREVDRLVREEGYE 90 >gi|323934035|gb|EGB30492.1| helix-turn-helix protein [Escherichia coli E1520] Length = 154 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 1/121 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ G+SQE + G + + E+G + ++ ++ L Sbjct: 1 MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI-QIDDVKVRQKIIELVRS 125 P+ +D D GL R + D +++ + Sbjct: 61 SVEPWQLLAPGPSEDNDSELLVPYAADGSCFHPGLASTRDGSFGVGDKAAQKRFGTFAEA 120 Query: 126 I 126 + Sbjct: 121 L 121 >gi|237733365|ref|ZP_04563846.1| predicted protein [Mollicutes bacterium D7] gi|229383577|gb|EEO33668.1| predicted protein [Coprobacillus sp. D7] Length = 79 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 35/77 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GKR+R R+ ++Q ++ GI + YE +L ++ + + + + Sbjct: 1 MNIGKRLRKLRIEHNLTQNEVSILTGIKRSSIASYELNEQLPPVDKLIQLANLYKVSLDY 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + + +E++ Sbjct: 61 LCGLDNSEIRNTRNEKS 77 >gi|116334878|ref|YP_796404.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116100225|gb|ABJ65373.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 201 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G R++ R L ++QE++ IT Q + +E L +S+ + Sbjct: 1 MKFGDRLKKGRTELNLTQEQVARDFFITRQTISSWENEKTYPDIISLIKLSDYYHVSLDT 60 Query: 73 FFDVS 77 Sbjct: 61 LLKED 65 >gi|313888356|ref|ZP_07822026.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845636|gb|EFR33027.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 367 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 40/97 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I +R G++QE+L E + +T V K+E G + L ++ + Sbjct: 4 IGENILQKRKERGITQEELAEFMMVTKASVSKWETGQSHPDILLLPKLATFFNISVDELI 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P + S + ++ + +G+ I+I Sbjct: 64 GYDPGLSSAQIQKFYIDLENRVSDEGMDSIFDDIKIK 100 >gi|309800668|ref|ZP_07694811.1| HTH-type transcriptional regulator xre [Streptococcus infantis SK1302] gi|308115743|gb|EFO53276.1| HTH-type transcriptional regulator xre [Streptococcus infantis SK1302] Length = 111 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 33/76 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ ++Q+++ + Q ++EKG+ + A LQ +++ + + Sbjct: 6 RLKEIRLNNKLTQKEVANHFQTSPQSYAQWEKGLRKPSAENLQKLADFFNVSTDYLLGKT 65 Query: 78 PTVCSDISSEENNVMD 93 D + + +D Sbjct: 66 DLPEPDSDIDLDTAID 81 >gi|303327942|ref|ZP_07358381.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302861768|gb|EFL84703.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 156 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 41/91 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I+ RR LG++QE L E +G+ Q + + E+G RL ++ L ++ F Sbjct: 50 VGTNIQERRKKLGLTQECLAEKIGVGQQSLSRMERGDIAPKLERLPDVAATLRCSVADLF 109 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 S ++ + + ++ + L R Sbjct: 110 RASGADDHALTRALEDALAGLNIHEKEYLVR 140 >gi|296876982|ref|ZP_06901026.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432017|gb|EFH17820.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 225 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 43/116 (37%), Gaps = 25/116 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ RR+ G++Q + E L I+ + +E G+ L+ +++ L +F + Sbjct: 5 KKLKERRLEKGLTQADVYEDLKISRKTYSSWENGLAEPHEKNLRRLAKRLSVKEDYFINK 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 Y + ++K+ +L ++ ++K Sbjct: 65 DS-------------------------ALYTYPLLTPPHQKKVDQLASQLLEQQQK 95 >gi|149907858|ref|ZP_01896526.1| DNA-binding protein [Moritella sp. PE36] gi|149808864|gb|EDM68795.1| DNA-binding protein [Moritella sp. PE36] Length = 214 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 40/81 (49%), Gaps = 2/81 (2%) Query: 11 VDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++I+ +G R++ R G S +K + G++ + + E+G + +L +I+ E Sbjct: 19 INIHTSLGSRLKTARSNKGWSLDKTSQHTGVSKAMLGQIERGESSPTVVKLWNIANGFEL 78 Query: 69 PISFFFDVSPTVCSDISSEEN 89 P+S+F ++ S+ + Sbjct: 79 PLSYFLTDLAQTQAETSANTS 99 >gi|170739100|ref|YP_001767755.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168193374|gb|ACA15321.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 183 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 32/81 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R + G+SQ L GI + E G L+ I + + ++ F Sbjct: 5 EVGARLRYVRTLHGLSQRALARKAGIVNSTISLIESGQTNPSVGALKRILDAVPIGLAEF 64 Query: 74 FDVSPTVCSDISSEENNVMDF 94 F + PT +++ Sbjct: 65 FSLEPTRTEKAFYAAEELVEI 85 >gi|42780950|ref|NP_978197.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42736871|gb|AAS40805.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 142 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 34/72 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R G SQE + + +G+T Q + ++E + L +SE+ + Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAIYRWENNKSYPDIDNLILLSEMYNVTLDA 60 Query: 73 FFDVSPTVCSDI 84 + + I Sbjct: 61 LIKGNQNMKEKI 72 >gi|295090423|emb|CBK76530.1| Predicted transcriptional regulators [Clostridium cf. saccharolyticum K10] Length = 171 Score = 51.4 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 44/94 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE+L L + Q V K+EKG++ ++ L +++ L++ +S Sbjct: 4 ENIKNLRKAKGLSQEELSVKLNVVRQTVSKWEKGLSVPDSNMLISLADELDTSVSILLGE 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + + ++ + + + R ++I Sbjct: 64 TVQEPCVNELDLKSISEKLEKINLQFAKRSKMRI 97 >gi|319947513|ref|ZP_08021745.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|319746453|gb|EFV98714.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] Length = 227 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ RR+ LG++Q ++ E L I+ + +E G+ L+ +++ L +F D Sbjct: 7 KKLKDRRLELGLTQAQVYESLEISRKTYSSWENGLAEPHDKNLRRLAKHLSVKEDYFVDK 66 Query: 77 SPT 79 S Sbjct: 67 SSA 69 >gi|291542946|emb|CBL16056.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 130 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 59/133 (44%), Gaps = 4/133 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K N +D +VG R+R R+ G++Q+++ + L I KYE GV+ L Sbjct: 1 MPKRKCSN-IDASVGLRMRYYRIQCGLTQQQVADALKINRTTYTKYETGVSEPSHELLGK 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I ++ + D + ++ + ++ ++ + + R + + ++KI E Sbjct: 60 IVKMFGIDYNAILD-NRDYFERRVADGDMTLNVLTLSERAIIAR--YRSMSKEDQKKICE 116 Query: 122 LVRSIVSSEKKYR 134 + + + + K Sbjct: 117 YIDMLYNEKAKKI 129 >gi|77919689|ref|YP_357504.1| transcriptional regulator Cro/CI family protein [Pelobacter carbinolicus DSM 2380] gi|77545772|gb|ABA89334.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM 2380] Length = 188 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 7/130 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++N+G++++ RMI ++QE+LG +T + + E + L+ I +V + Sbjct: 4 NLNIGEKLKRLRMINSLTQEELGNRADLTKGYISQLENDTACPSIATLKDILDVFGVSMQ 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV--RSIVSS 129 FF ++ ++L + + R+ LV Sbjct: 64 EFFTDPVDTEVVFGTDARVQPTNDGDDIKVELL-----VPGAQNREMDPALVTLEPGAEM 118 Query: 130 EKKYRTIEEE 139 E++ EE Sbjct: 119 EEQDFHEGEE 128 >gi|28210633|ref|NP_781577.1| putative transcriptional regulator [Clostridium tetani E88] gi|28203071|gb|AAO35514.1| putative transcriptional regulator [Clostridium tetani E88] Length = 126 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 43/98 (43%), Gaps = 1/98 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R++ R + SQE+L + LG++ Q + K+E G + S + +S + + Sbjct: 1 MEISERLQQLRKLANYSQEQLADMLGVSRQAISKWESGQSNPDISNVIKLSGIYNVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 S+++ + + + +++ + I Sbjct: 61 ILIG-KEPNSELTENKMETKCKVEKKTYIPISKKALSI 97 >gi|16764259|ref|NP_459874.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|169257171|ref|YP_001700549.1| putative transcriptional regulator (repressor) [Salmonella phage Fels-1] gi|16419406|gb|AAL19833.1| predicted Fels-1 prophage transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] Length = 231 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 51/125 (40%), Gaps = 1/125 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++IR R M+ +L + + E+G+ A +Q I+E L+ P+S Sbjct: 3 VKVGQKIRELRKARKMTITQLAALTDWDVGNISRLERGMQGYSAQSIQKIAEALQVPVSE 62 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 F + + + S + + + + + + IE++ SI + Sbjct: 63 LFSTETDSDTVNKYSVLSLSHQRRNDVYRVDVMDVSASAGNGNSSRDFIEVISSIEYVTE 122 Query: 132 KYRTI 136 + +T+ Sbjct: 123 EAKTL 127 >gi|330970664|gb|EGH70730.1| XRE family transcriptional regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 115 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 44/121 (36%), Gaps = 12/121 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R++ R LG+SQ + G L ++ + YE G N + + + + + Sbjct: 7 VGDRLKEERERLGLSQTEFGTRLRVSRGTQKNYELGANSLDLRYVAALVD-HGVDAGYVL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + L + ++ V ++ + +V+S+ + + Sbjct: 66 TGHRSPAPGQGLKPDE----------ADLVDQYRRLP-VNDQKTVRRIVKSMAAEADEAS 114 Query: 135 T 135 Sbjct: 115 K 115 >gi|319936497|ref|ZP_08010913.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319808612|gb|EFW05164.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 241 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 33/90 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + + R G SQE+ LG++ Q V K+E G + RL I+ + E + Sbjct: 1 MKLYENLSSLRKQKGYSQEEFAYLLGVSRQSVSKWESGASIPELERLVEIANIFEVSLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 V + + + + Sbjct: 61 LVKGEKAVIQGAVISDEQLHRVLRKSMSYE 90 >gi|266619976|ref|ZP_06112911.1| helix-turn-helix protein [Clostridium hathewayi DSM 13479] gi|288868440|gb|EFD00739.1| helix-turn-helix protein [Clostridium hathewayi DSM 13479] Length = 260 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 2/94 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q + K+E +L +S++ + P+ F Sbjct: 4 GEKLFNLRKEKGLSQEALAEQLNTTRQAISKWENNHGYPETEKLLKLSDIFQVPVDFLLK 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ--LNRYF 107 + + + S + + + +NRYF Sbjct: 64 ETTGIENQNSGNIYVTREMAVSYLSSESMVNRYF 97 >gi|225019956|ref|ZP_03709148.1| hypothetical protein CLOSTMETH_03915 [Clostridium methylpentosum DSM 5476] gi|224947320|gb|EEG28529.1| hypothetical protein CLOSTMETH_03915 [Clostridium methylpentosum DSM 5476] Length = 122 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 45/119 (37%), Gaps = 2/119 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G +I+ R + Q+++ E L ++ + YE+ N+ + ++++ + Sbjct: 1 MRFGDKIKNLRTDADLKQKEVAEILKVSRSSISSYEQNKNQPDLHAVIELAKLFNVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + E + ++L ++D V ++EL+ + + K Sbjct: 61 LL-GLSEYKTSWVDETECISTNSDNVKIVELLNDIKKLDKPDV-SHLVELINIMKNQNK 117 >gi|326382822|ref|ZP_08204512.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] gi|326198412|gb|EGD55596.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] Length = 186 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ +G R+R R G+S +L I + + E G L + L+ P++ Sbjct: 3 DLGIGDRLRELRAARGLSLSELARRADIGKATLSEIESGRRNPNIETLYALCAPLDVPLT 62 Query: 72 FFFDVSPTVCSDIS 85 +P + Sbjct: 63 GMLGETPGTHGTAA 76 >gi|317057326|ref|YP_004105793.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449595|gb|ADU23159.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 117 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 14/119 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+RIR RR+ LG+SQE+L E GIT V E+ ++ + IS VLE + + Sbjct: 12 AVGERIRSRRVKLGLSQEQLAELCGITPSYVGHIERASRQLSLNTAISISTVLEISLDYL 71 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D+ L+ ++ + K + V+ + + + Sbjct: 72 LLDVKNENGDVG--------------VLESISAELKNHSPEQVSKFLNTVKILAENIDE 116 >gi|291561595|emb|CBL40394.1| Predicted transcriptional regulators [butyrate-producing bacterium SS3/4] Length = 157 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 46/113 (40%), Gaps = 6/113 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K +R R G SQ +L + + ++ V +E ++ G + L ++ + E + ++ Sbjct: 4 KTLRTLRAEKGFSQGQLAKAINVSPGNVSDWETDKSKPGYNALAALARIFEVSADYLLEL 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNR------YFIQIDDVKVRQKIIELV 123 + + + + DG LN ++ + +++I +L+ Sbjct: 64 DVSPEKKGVDLSDYKNEQGLSCDGSPLNAMEADVVAMFRLLPERHQEEIFDLI 116 >gi|237745238|ref|ZP_04575719.1| phage transcriptional repressor [Fusobacterium sp. 7_1] gi|229432467|gb|EEO42679.1| phage transcriptional repressor [Fusobacterium sp. 7_1] Length = 204 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 34/73 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R ++Q++L + L I+ Q + YE ++ L I+ + PI FF Sbjct: 4 IGEKIIFLRKKNKITQDELADALEISKQSILNYETEKRQIPIDVLSKIATFFKIPIEAFF 63 Query: 75 DVSPTVCSDISSE 87 + +I + Sbjct: 64 SDNYDNFEEIKNN 76 >gi|237736543|ref|ZP_04567024.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] gi|229420405|gb|EEO35452.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] Length = 183 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 35/82 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R G+S +L + ++ + + E+G L+ I+ L+ +S+ Sbjct: 4 IGERIKKSRNDRGLSLRELATKVELSASFLSQIEQGKASPSIENLKKIATSLDVKVSYLI 63 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 + + ++N S Sbjct: 64 EDEEEKQNTELVRKDNRKYIES 85 >gi|226328630|ref|ZP_03804148.1| hypothetical protein PROPEN_02525 [Proteus penneri ATCC 35198] gi|225203363|gb|EEG85717.1| hypothetical protein PROPEN_02525 [Proteus penneri ATCC 35198] Length = 97 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + VGK+IR R + M+ ++LG LGI+ Q +YE G + A L Sbjct: 1 MRTFAMNKKISKLVGKKIRSLREMYCMTGDELGALLGISQQHQSRYENGETNIHAETLYC 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEE 88 +S + +F + + ++ Sbjct: 61 LSYFFDVEPEYFLSDLLIEDNKLEKDK 87 >gi|126699248|ref|YP_001088145.1| putative transcriptional regulator [Clostridium difficile 630] gi|115250685|emb|CAJ68509.1| Transcriptional regulator, RmlC-type [Clostridium difficile] Length = 187 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I+VG +IR R +S L + ++ + + E+ + + IS+ L+ I Sbjct: 4 MNIDVGSKIRSLRKSKNISISTLAKNSDLSTGLISQIERNMVVPSIVAMWKISKALDINI 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +FF+ SDI ++NN ++ F ++ + K IE + Sbjct: 64 GYFFEEIGREDSDIVVKKNNRKKIVTNDST-----KFYELLVPNLSGKKIEFI 111 >gi|330825988|ref|YP_004389291.1| helix-turn-helix domain-containing protein [Alicycliphilus denitrificans K601] gi|329311360|gb|AEB85775.1| helix-turn-helix domain protein [Alicycliphilus denitrificans K601] Length = 117 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 1/112 (0%) Query: 2 VGNKKIP-NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + KK P P+ +G +I R +Q L E +G+ + + + E+G L+ Sbjct: 1 MVKKKHPGKPLAQRLGTQIATLRKTKEWTQADLAERIGVEPETISRVERGATTPSLQTLE 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 IS L I + D +++ + + P + + D Sbjct: 61 KISHCLRVRIGELLAETSAQPDDQATKIAAWLAELDEPHRSFVVDLVKRTCD 112 >gi|323490301|ref|ZP_08095516.1| AnsR [Planococcus donghaensis MPA1U2] gi|323395971|gb|EGA88802.1| AnsR [Planococcus donghaensis MPA1U2] Length = 118 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 38/93 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + KRI+ R G+S E+L + +G V YE G +V L+ +++ E + Sbjct: 2 KQLSKRIKDLREAKGLSTEELADAIGFAKSTVWAYESGKKQVSVVHLERLADYFEISVDS 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 D + + + D+ D LN+ Sbjct: 62 LLDRDERTINVDLQNTSFLNDYNLMLDDQPLNQ 94 >gi|319782137|ref|YP_004141613.1| hypothetical protein Mesci_2417 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168025|gb|ADV11563.1| Protein of unknown function DUF2083,transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 480 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 2/128 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R G++Q + E LGI+ + E+ + + ++ V + Sbjct: 9 GPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQRPLTVQLILRLASVYKVDPHELQG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + + + + P +L + +I+L R+ ++ Sbjct: 69 EARGSVAALKEVFTDPLLVGELPGDQELIELAEAAPNASA--AVIKLFRAYREQAERLSD 126 Query: 136 IEEECMVE 143 + E E Sbjct: 127 LNELLARE 134 >gi|310778021|ref|YP_003966354.1| transcriptional regulator, MerR family [Ilyobacter polytropus DSM 2926] gi|309747344|gb|ADO82006.1| transcriptional regulator, MerR family [Ilyobacter polytropus DSM 2926] Length = 182 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+RI+ R G+S L + ++ + + E+G L+ I+ L+ +S+ Sbjct: 1 MSLGERIKKNRNEKGLSLRDLAGRVDLSASFLSQIEQGKASPSIENLKKIANCLDVRVSY 60 Query: 73 FFDVSP 78 + Sbjct: 61 LIEDDE 66 >gi|254993818|ref|ZP_05276008.1| DNA-binding protein [Listeria monocytogenes FSL J2-064] Length = 169 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLLGE 63 >gi|154482431|ref|ZP_02024879.1| hypothetical protein EUBVEN_00098 [Eubacterium ventriosum ATCC 27560] gi|149736708|gb|EDM52594.1| hypothetical protein EUBVEN_00098 [Eubacterium ventriosum ATCC 27560] Length = 293 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 32/69 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R G+SQEK+ E +G++ Q + K+E G + L I+++ + + Sbjct: 5 EQIKHYRKQAGLSQEKMAEKIGVSRQAITKWENGTGTPDIANLMAIADLFQISVDELLSN 64 Query: 77 SPTVCSDIS 85 + Sbjct: 65 EKSEKKQSD 73 >gi|149178990|ref|ZP_01857565.1| DNA-binding protein [Planctomyces maris DSM 8797] gi|148842189|gb|EDL56577.1| DNA-binding protein [Planctomyces maris DSM 8797] Length = 205 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 39/117 (33%), Gaps = 5/117 (4%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ + + +R+R R G S + L G++ + + E+G + IS+ Sbjct: 20 PDEISGQLSQRVRELRKERGWSLDSLSAACGVSRSMLSQIERGEANPTLAVTVRISQAFG 79 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + + + + + D ++ + +K +E Sbjct: 80 IALGELVEAPVSTSAIEVIRAEDRTFHYRSDDECRI-----RTLSPLHLEKDVEFYE 131 >gi|148358304|ref|YP_001249511.1| phage repressor [Legionella pneumophila str. Corby] gi|296105654|ref|YP_003617354.1| hypothetical protein lpa_00219 [Legionella pneumophila 2300/99 Alcoy] gi|148280077|gb|ABQ54165.1| phage repressor [Legionella pneumophila str. Corby] gi|295647555|gb|ADG23402.1| hypothetical protein lpa_00219 [Legionella pneumophila 2300/99 Alcoy] Length = 219 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 1/103 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESP 69 + +GKRI R G++ ++LGE G Q + +E+G G ++ +++ L+ Sbjct: 3 IKKEIGKRIFEARKEKGLTLKELGELTGGLKQTRLTNWEQGTRAPGPEEIKLLAQALDVS 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +F +S + ++++ + + I D Sbjct: 63 PAFLMCLSDDQQVKRTKSYSHLIPLLDHHQACDAKSFIEAISD 105 >gi|160878226|ref|YP_001557194.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426892|gb|ABX40455.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 273 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 36/76 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R G+SQE+L + L ++ Q V K+E S+L +SE+ E + + Sbjct: 6 KLIELRRERGLSQEQLADQLDVSRQSVSKWESDQTMPELSKLITLSEIFEVSLDYLMRDY 65 Query: 78 PTVCSDISSEENNVMD 93 S +++N +D Sbjct: 66 IMDRSGTREKKDNTVD 81 >gi|58040192|ref|YP_192156.1| hypothetical protein GOX1761 [Gluconobacter oxydans 621H] gi|58002606|gb|AAW61500.1| Hypothetical protein GOX1761 [Gluconobacter oxydans 621H] Length = 203 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 38/97 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIRL R + G+SQ++L + +GI+ V +E G + L +++VL Sbjct: 81 LELGRRIRLLREMAGLSQQQLADKVGISRSAVAFWETGRSGHVGKHLGSLAQVLGVEPEV 140 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + L + Q Sbjct: 141 LLTGMAYKAIQATLTPDENTMLTLYRQLDPLIKLQAQ 177 >gi|304397757|ref|ZP_07379634.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304354929|gb|EFM19299.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 185 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 49/131 (37%), Gaps = 11/131 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ +R R G S E G++ + + E+G + + L I+ P SFF Sbjct: 7 HLSGALRQLRQANGWSLTLTAERTGVSKAMLGQIERGESSPTVATLWKIATGFNVPFSFF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D S + ++ + +S L D +R ++ + + + + + Sbjct: 67 IDGS-ALPPGTATGFSQPNAEMSVRSLLPY--------DPHLRFDLLAV--ELAAGAQSH 115 Query: 134 RTIEEECMVEQ 144 + E VEQ Sbjct: 116 SSPHEAGCVEQ 126 >gi|212711619|ref|ZP_03319747.1| hypothetical protein PROVALCAL_02694 [Providencia alcalifaciens DSM 30120] gi|212685721|gb|EEB45249.1| hypothetical protein PROVALCAL_02694 [Providencia alcalifaciens DSM 30120] Length = 91 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 41/89 (46%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PV +G +IR R G+S + + +GI+ QQ +YE+G NR+ RL+ + Sbjct: 2 KNSYPVSAVIGYKIRELRKEKGLSLLAVAKTIGISEQQQLRYERGHNRISIDRLKQYAIY 61 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDF 94 I+ FF + I E ++ Sbjct: 62 FNININDFFLFNEHEKEKIKRELRRKLEI 90 >gi|183601133|ref|ZP_02962626.1| hypothetical protein PROSTU_04762 [Providencia stuartii ATCC 25827] gi|188019477|gb|EDU57517.1| hypothetical protein PROSTU_04762 [Providencia stuartii ATCC 25827] Length = 131 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GK I R M+ + L + + ++ QQ+ +YE GV + L I L+ ++ Sbjct: 22 KAIGKEIHKLRKERSMTGKDLAKLVNVSQQQISRYECGVCNITIDTLIVILNALDVSLTD 81 Query: 73 FFD 75 FF+ Sbjct: 82 FFN 84 >gi|291549706|emb|CBL25968.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 345 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 40/90 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G I+ R GM+QE++ LG+T V K+E ++ L I+ +L+ + Sbjct: 1 MDIGVVIKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSKPDIELLAPIARLLDISLDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + E MD + + +G + Sbjct: 61 LLSFHEKLSDTEIEEIIRKMDRMFSEEGYE 90 >gi|283479863|emb|CAY75779.1| HTH-type transcriptional regulator immR [Erwinia pyrifoliae DSM 12163] gi|283479872|emb|CAY75788.1| HTH-type transcriptional regulator immR [Erwinia pyrifoliae DSM 12163] Length = 167 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 8/112 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R ++Q +L L I + + ++E+G + + +++ LE + Sbjct: 52 GKRLAALRKERQLTQIELANLLDIQPRMLGRWEQGQVKPQFDYIIKLAQFLEVSTDYMLL 111 Query: 76 VSPTVCSDISSEENNVMDFISTP------DGLQLNRYF--IQIDDVKVRQKI 119 + + +N + + + + +F + I KVRQ I Sbjct: 112 GEEDTAAPVFDIKNKRLKELCKQVDGLKTEDQDMICHFLDMAITQEKVRQAI 163 >gi|213019843|ref|ZP_03335645.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994591|gb|EEB55237.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 328 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 12/139 (8%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V +GK+I R++ G +Q KL +G+T +++ +E G + I+ L Sbjct: 23 SVSYELGKKIEGCRIVQGYTQAKLASKIGLTHKEIHNFELGCKAITIKESYIIAGALSVN 82 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV-- 127 + + N + + L + +I D ++R+K+ LVR + Sbjct: 83 VIDLL-------PGPTVLRENSWYEDEDKEIVYLTKIHREIKDQELRKKLYPLVRFVYIS 135 Query: 128 ---SSEKKYRTIEEECMVE 143 S E+ + + + E Sbjct: 136 EKISQEEAKIEVAKNLVKE 154 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + VGKRI+ +R+I +QE L +G T +++ YE+G + L I++ L Sbjct: 182 DSILYKVGKRIKEQRLIREYTQEDLANKIGSTPKEIHDYERGYTDIPIEILYKIAKTLSV 241 Query: 69 PI 70 I Sbjct: 242 NI 243 >gi|218897578|ref|YP_002445989.1| putative DNA-binding protein [Bacillus cereus G9842] gi|228906186|ref|ZP_04070074.1| transcriptional regulator [Bacillus thuringiensis IBL 200] gi|229110034|ref|ZP_04239611.1| transcriptional regulator [Bacillus cereus Rock1-15] gi|218543081|gb|ACK95475.1| putative DNA-binding protein [Bacillus cereus G9842] gi|228673387|gb|EEL28654.1| transcriptional regulator [Bacillus cereus Rock1-15] gi|228853443|gb|EEM98212.1| transcriptional regulator [Bacillus thuringiensis IBL 200] Length = 117 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 49/117 (41%), Gaps = 7/117 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ ++Q++L + +G++ V Y +G G LQ I+ L+ + + Sbjct: 5 ERLKSLIEKKSITQQQLADAIGVSHVSVYNYVEGKKAPGTRTLQKIANYLKVTTDYLLGL 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 S + D T + ++ + + + + R+K +E + V+ EK Sbjct: 65 SDSPDLTAGE------DLQLTKEAHEILQIINDLPEEQ-RKKALEQLEMFVNYEKSK 114 >gi|326391782|ref|ZP_08213301.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325992170|gb|EGD50643.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 88 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I++G +I+ R+ +SQ +L + + E G +L +I+E LE P+ Sbjct: 1 MNISIGTKIKSLRLQKKLSQSELCGNFM-NRVVLSRIENGKALPSLEQLIYIAEKLEVPV 59 Query: 71 SFFFDVSPTVCSDISSEE 88 S+FF ++E Sbjct: 60 SYFFSDLKDTSCINNAES 77 >gi|255974976|ref|ZP_05425562.1| predicted protein [Enterococcus faecalis T2] gi|255967848|gb|EET98470.1| predicted protein [Enterococcus faecalis T2] Length = 239 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +++RR LG++Q ++ E L +T Q + +E + L +S + E + Sbjct: 1 MNIGNSLKMRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSILYEMTLDR 60 Query: 73 FFDVSPTVCSDISSEENN 90 T+ +S + Sbjct: 61 LLKEDNTMVEKLSKDIRE 78 >gi|73663748|ref|YP_302529.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496263|dbj|BAE19584.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 187 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 30/79 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R +SQE L E L ++ Q + +E + L +S + + + Sbjct: 1 MNLGHQIKYYRQRGYLSQESLAEKLYVSRQTISNWENDKSYPDIHNLLMLSSLFDVSLDD 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + E Sbjct: 61 LVKGDVEIMERKLKESRFN 79 >gi|88812246|ref|ZP_01127497.1| probable transcriptional regulator [Nitrococcus mobilis Nb-231] gi|88790497|gb|EAR21613.1| probable transcriptional regulator [Nitrococcus mobilis Nb-231] Length = 179 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 1/104 (0%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DV 76 R++L R LG + E L + G+T + K E+G+N + ++E L + F D Sbjct: 4 RLKLLRKKLGFTLEALAQQTGLTKSYLSKVERGLNTPSIAVALKVAEALNVQVEELFSDG 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 N S DGL +I +V I+ Sbjct: 64 DEASDGYSLVRANERGSLASGDDGLAYASLANRIGSRRVLPFIL 107 >gi|313247825|ref|YP_004032987.1| DNA-binding protein [Enterococcus faecalis] gi|312836992|dbj|BAJ34878.1| DNA-binding protein [Enterococcus faecalis] Length = 204 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R ++QE+L E L ++ + K+E G L+ IS+ I Sbjct: 5 EKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTIDELLSG 64 Query: 77 SP 78 Sbjct: 65 EE 66 >gi|295106127|emb|CBL03670.1| looped-hinge helix DNA binding domain, AbrB family [Gordonibacter pamelaeae 7-10-1-b] Length = 140 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ RR +G++QE+L L + Q V K+E G + + ++E L+ + Sbjct: 1 MIGSNIQSRRRAIGLTQEQLAAALAVARQTVAKWEAGDSVPDLANAGALAEALDVSLDAL 60 Query: 74 FDVSP 78 P Sbjct: 61 VGYDP 65 >gi|289422954|ref|ZP_06424776.1| helix-turn-helix domain protein [Peptostreptococcus anaerobius 653-L] gi|289156634|gb|EFD05277.1| helix-turn-helix domain protein [Peptostreptococcus anaerobius 653-L] Length = 344 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 45/99 (45%), Gaps = 1/99 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-D 75 ++I R +G SQE+L L ++ Q V K+E GV+ +++ +SEV + + Sbjct: 5 EKIMSLRKKMGWSQEELANELNVSRQSVSKWETGVSIPDMAKIVMMSEVFGVTTDYLLKE 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + +++S + D + + F+ I++ Sbjct: 65 GANDEILELNSSSQEITSSDIKKDYKKEGKTFVTIEEAD 103 >gi|242239429|ref|YP_002987610.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242131486|gb|ACS85788.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 131 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRI R G++Q +L + L ++ Q VQ +E G R+ S L ++ L + Sbjct: 15 ELGKRITALRKDAGLTQVQLAQALNVSQQAVQSWESGRRRIQISALPAVARQLSVSLDAL 74 Query: 74 FDVSPTVCS 82 S T Sbjct: 75 LGDSHTPPP 83 >gi|227518256|ref|ZP_03948305.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227554727|ref|ZP_03984774.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256963254|ref|ZP_05567425.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|257088722|ref|ZP_05583083.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|307270406|ref|ZP_07551709.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307287459|ref|ZP_07567511.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|312905012|ref|ZP_07764144.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|227074295|gb|EEI12258.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227176142|gb|EEI57114.1| transcriptional regulator [Enterococcus faecalis HH22] gi|256953750|gb|EEU70382.1| conserved hypothetical protein [Enterococcus faecalis HIP11704] gi|256997534|gb|EEU84054.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|306501505|gb|EFM70804.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306513253|gb|EFM81882.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310631673|gb|EFQ14956.1| helix-turn-helix protein [Enterococcus faecalis TX0635] Length = 204 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R ++QE+L E L ++ + K+E G L+ IS+ I Sbjct: 5 EKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTIDELLSG 64 Query: 77 SP 78 Sbjct: 65 EE 66 >gi|170742019|ref|YP_001770674.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168196293|gb|ACA18240.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 201 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 39/66 (59%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ +G++IR R I G++ +++ +G++ + + E+ +++ L+ I+ +L Sbjct: 16 NEQELLLGEQIRALRKIKGLTLQQIAGEIGVSIGYLSQIERNRSKLPIGVLKRIATILGV 75 Query: 69 PISFFF 74 +S+FF Sbjct: 76 QLSWFF 81 >gi|160915619|ref|ZP_02077827.1| hypothetical protein EUBDOL_01626 [Eubacterium dolichum DSM 3991] gi|331082745|ref|ZP_08331868.1| hypothetical protein HMPREF0992_00792 [Lachnospiraceae bacterium 6_1_63FAA] gi|158432095|gb|EDP10384.1| hypothetical protein EUBDOL_01626 [Eubacterium dolichum DSM 3991] gi|330400364|gb|EGG80006.1| hypothetical protein HMPREF0992_00792 [Lachnospiraceae bacterium 6_1_63FAA] Length = 204 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R ++QE+L E L ++ + K+E G L+ IS+ I Sbjct: 5 EKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFSVTIDELLSG 64 Query: 77 SP 78 Sbjct: 65 EE 66 >gi|29826758|ref|NP_821392.1| transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29603854|dbj|BAC67927.1| putative transcriptional regulatory protein [Streptomyces avermitilis MA-4680] Length = 135 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 57/138 (41%), Gaps = 17/138 (12%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + + +P + +G+R++ R L MSQ+ + + GI + E+G RV + L+ + Sbjct: 6 SDNRDRDPELVRLGERLKKTRDYLNMSQQFVSDSTGIPRSAISDIERGERRVDSLELKKL 65 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + P+++F + S L R Q+ D R ++E Sbjct: 66 ARLYRQPVAYFLAEEKDADASEYSLAG-------------LPRALAQLTDGDART-VLEF 111 Query: 123 VRSI---VSSEKKYRTIE 137 + ++E++ + E Sbjct: 112 AEYLTLRRAAEREDQNAE 129 >gi|259503754|ref|ZP_05746656.1| DNA-binding protein [Lactobacillus antri DSM 16041] gi|259168270|gb|EEW52765.1| DNA-binding protein [Lactobacillus antri DSM 16041] Length = 112 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R +Q+ L E L ++ Q + K+E G RL IS + + + Sbjct: 1 MTLGQRIKEEREKRQWTQDYLAETLNVSRQAISKWEVGSAYPDIDRLVQISNLFDITLDS 60 Query: 73 FFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQID 111 ++ I + + NV +F+ + + + I Sbjct: 61 LIKGDDSLKKSIVITKNAKAQTNVWEFMRSTGWMMVIAIIYLIT 104 >gi|290580727|ref|YP_003485119.1| hypothetical protein SmuNN2025_1201 [Streptococcus mutans NN2025] gi|254997626|dbj|BAH88227.1| hypothetical protein [Streptococcus mutans NN2025] Length = 294 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 28/66 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R LG+SQEKL E L I+ Q + K+E G L +S+ + I Sbjct: 6 RLRDYRKQLGLSQEKLAEELHISRQAITKWESGAGTPDVVNLMALSDFFQVSIDQLLFGK 65 Query: 78 PTVCSD 83 Sbjct: 66 EANRQS 71 >gi|139438005|ref|ZP_01771558.1| Hypothetical protein COLAER_00545 [Collinsella aerofaciens ATCC 25986] gi|133776202|gb|EBA40022.1| Hypothetical protein COLAER_00545 [Collinsella aerofaciens ATCC 25986] Length = 238 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 36/80 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +R+ R G SQE L LG++ Q V K+E+ + L ++++ + Sbjct: 1 MNVETAQRLADLRRSKGFSQEGLARKLGLSRQAVSKWERAESSPDTENLISLAKLYGVSL 60 Query: 71 SFFFDVSPTVCSDISSEENN 90 + S + DI E + Sbjct: 61 DELLNPSDEIEDDIEFENED 80 >gi|119487541|ref|ZP_01621151.1| subunit S of type I restriction-modification system [Lyngbya sp. PCC 8106] gi|119455710|gb|EAW36846.1| subunit S of type I restriction-modification system [Lyngbya sp. PCC 8106] Length = 72 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 28/72 (38%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +G IR R G+SQEKL E + + E+G V + I+ L Sbjct: 1 MKHEPRKKLGSNIRQLRRSQGLSQEKLAEKADLHRTYIGAIERGERNVSLDNIVAIAHAL 60 Query: 67 ESPISFFFDVSP 78 P S + Sbjct: 61 GVPASKLLEGVD 72 >gi|332522412|ref|ZP_08398664.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332313676|gb|EGJ26661.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 232 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ RM SQ +L L I K+E G + L ++ +L+ P ++F Sbjct: 4 GSRLKELRMEKQYSQSELANLLKINRASYNKWESGKSVPNQKNLSALARILDVPTTYF 61 >gi|325289343|ref|YP_004265524.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964744|gb|ADY55523.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 109 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 39/93 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI RR +L ++Q+ + E G++ + E + L I EVL+ +F Sbjct: 8 LGERIAKRRKVLNLTQDDVAEATGLSNNHISNIENNHSIPSIETLLKICEVLDITPDYFL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 +D + N + L+L +F Sbjct: 68 LGIVRHKNDGLLSQINQKIKLCETKKLELVDHF 100 >gi|323975381|gb|EGB70482.1| helix-turn-helix protein [Escherichia coli TW10509] Length = 154 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 1/121 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ G+SQE + G + + E+G + ++ ++ L Sbjct: 1 MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI-QIDDVKVRQKIIELVRS 125 P+ +D D GL R + D +++ + Sbjct: 61 SVEPWQLLAPGPSEDNDSELLVPYAADGSCFHPGLASTRDGSFGVGDKAAQKRFGTFAEA 120 Query: 126 I 126 + Sbjct: 121 L 121 >gi|322373520|ref|ZP_08048056.1| putative repressor protein [Streptococcus sp. C150] gi|321278562|gb|EFX55631.1| putative repressor protein [Streptococcus sp. C150] Length = 227 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 55/127 (43%), Gaps = 26/127 (20%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+ + + LGI++Q +E+GV ++ + ++L P +F + Sbjct: 5 EKLKARRKELKITQKDIADQLGISYQAYSAWERGVKEPSKEKVNRLEQILRVPKGYFTE- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 +++ R + + + K + +++E R +V E + Sbjct: 64 ------------------------IEIARLYNVLSN-KGQNQVLEYTRRLVQEESRKIVT 98 Query: 137 EEECMVE 143 E + E Sbjct: 99 VSENLYE 105 >gi|293401810|ref|ZP_06645951.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304762|gb|EFE46010.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 371 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 46/135 (34%), Gaps = 9/135 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R ++Q++L +G++ V K+E + L ++ + + Sbjct: 6 LGENIAALRRKANITQDQLANWIGVSKSSVSKWETNTSYPDIIFLPQLATLFNVTVDELM 65 Query: 75 DVSPTVCSDI-------SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 P + + S+E + +L + + ++ L + Sbjct: 66 GYEPQLTQEAIVELYHQLSDEIAHDSDEALKHCEELLHTYHACFPFLYKMIVLYL--NHA 123 Query: 128 SSEKKYRTIEEECMV 142 + K I +E + Sbjct: 124 TLFKDPAKILDEALK 138 >gi|163814737|ref|ZP_02206126.1| hypothetical protein COPEUT_00888 [Coprococcus eutactus ATCC 27759] gi|158450372|gb|EDP27367.1| hypothetical protein COPEUT_00888 [Coprococcus eutactus ATCC 27759] Length = 108 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 40/101 (39%), Gaps = 3/101 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K+ + + +G+RI+ R + ++QE+LG + + + + E G + RL Sbjct: 1 MNREEKVNSMI---IGQRIKYARKSMNLTQEELGRLMCTDGKYISRLESGKSLPSLKRLV 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 +S L+ +F + + + L Sbjct: 58 QLSRALKCTCDYFLWDMDVPETGSEDVDIEFDVDNAVDVML 98 >gi|224283083|ref|ZP_03646405.1| Hypothetical transcriptional regulator [Bifidobacterium bifidum NCIMB 41171] gi|313140233|ref|ZP_07802426.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132743|gb|EFR50360.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 161 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 33/68 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ I++ R G++Q + L +T Q + ++EKG ++ IS E P+ Sbjct: 1 MSIGQVIKVVREERGLTQSQFAHELFVTQQALSRWEKGTAEPSIDMIRLISTRFEVPMPR 60 Query: 73 FFDVSPTV 80 ++ Sbjct: 61 LMEMPDNG 68 >gi|217965166|ref|YP_002350844.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|217334436|gb|ACK40230.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|307570274|emb|CAR83453.1| DNA-binding protein [Listeria monocytogenes L99] Length = 169 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLLGE 63 >gi|210630507|ref|ZP_03296490.1| hypothetical protein COLSTE_00375 [Collinsella stercoris DSM 13279] gi|210160441|gb|EEA91412.1| hypothetical protein COLSTE_00375 [Collinsella stercoris DSM 13279] Length = 234 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 15/130 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RIR R M+Q +L + ++ Q V +EKG A L+ +S VL + Sbjct: 33 LASRIRGLRENASMTQGELASRVFVSRQTVINWEKGRTLPDAESLKRLSSVLGITLDALL 92 Query: 75 DVSPTVCSDISSEEN---------NVMDFISTPDGLQLNRYFIQIDDV------KVRQKI 119 D E + + G+ + + D ++I Sbjct: 93 DERSEERLRQIEGERKIFKLAILFECLWSLEKLIGVIVVTIAHKFLDPSAAYQIADVERI 152 Query: 120 IELVRSIVSS 129 I L S+ + Sbjct: 153 IGLAISLAAL 162 >gi|332687060|ref|YP_004456834.1| MerR family transcriptional regulator [Melissococcus plutonius ATCC 35311] gi|332371069|dbj|BAK22025.1| transcriptional regulator, MerR family, near polyamine transporter [Melissococcus plutonius ATCC 35311] Length = 180 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 1/91 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R+R R+ ++QE+LGE +T + + E+ ++ I EVL Sbjct: 1 MEIGDRLRNLRIQRDLTQEELGERTDLTKGYISQLERNLSSPSMETFFTILEVLGVSPEE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF+ T+ I ++ + + +G +L Sbjct: 61 FFN-EQTMEQKIVYQDKDNTHYYDEENGYEL 90 >gi|227113894|ref|ZP_03827550.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 188 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 5/138 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G ++ R G S + E G++ + + E+G + + L I+ + Sbjct: 1 MSDELTRRIGNTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGM 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 S F + + D++ F G+ + F D K+R LV + Sbjct: 61 NVAFSTFIEPTLAD-EDVTYRSGAGSSFKENEAGMHVVPLFP--FDEKLR--FDMLVIEL 115 Query: 127 VSSEKKYRTIEEECMVEQ 144 + + E ++E Sbjct: 116 EAGASSTSSAHESGVIEH 133 >gi|225568758|ref|ZP_03777783.1| hypothetical protein CLOHYLEM_04837 [Clostridium hylemonae DSM 15053] gi|225162257|gb|EEG74876.1| hypothetical protein CLOHYLEM_04837 [Clostridium hylemonae DSM 15053] Length = 205 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I+ R G +Q +L E + ++ + V K+E G + ++ L ++ + Sbjct: 18 GSIIKELRERKGYTQRQLAESVCVSDKTVSKWETGKGLPDVGIITELASALGVSLAELLN 77 Query: 76 VS 77 Sbjct: 78 GE 79 >gi|187777952|ref|ZP_02994425.1| hypothetical protein CLOSPO_01544 [Clostridium sporogenes ATCC 15579] gi|187774880|gb|EDU38682.1| hypothetical protein CLOSPO_01544 [Clostridium sporogenes ATCC 15579] Length = 384 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 13/147 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N +N+G I +R G++QE+L + +G++ V K+E G++ L I+ Sbjct: 1 MINLRGLNIGNCIVHKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPEIATYF 60 Query: 67 ESPISFFFDVSPTVCSD--------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + SP + + +S E +L + + + Sbjct: 61 NISVDELLGYSPQLTKEDIKKIYSKLSHEFAVRPFDEVMEQCNKLIKKYYSCFPFLL--S 118 Query: 119 IIEL---VRSIVSSEKKYRTIEEECMV 142 II+L S++ + + I ++C++ Sbjct: 119 IIQLLLNYSSLIKDDAIKKEIFQQCIL 145 >gi|332653138|ref|ZP_08418883.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518284|gb|EGJ47887.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 348 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 2/110 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR +R L ++QE+L + LG++ V K+EKG + L ++ VL + ++ Sbjct: 1 MKLGEIIREKRKALSLTQEQLADYLGVSAPAVHKWEKGTTYPDITTLPALARVLRTDLNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN--RYFIQIDDVKVRQKII 120 + + + +D + + + R QI +K+I Sbjct: 61 LLSFQEELTDEEITRFLEELDRMISQESYDAAFQRAMDQIHQYPTCEKLI 110 >gi|227892646|ref|ZP_04010451.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047] gi|227865517|gb|EEJ72938.1| conserved hypothetical protein [Lactobacillus ultunensis DSM 16047] Length = 265 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 4/132 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R R L ++Q ++ + I+ K E + + +L I + + Sbjct: 1 MTIGYQLRKIRQFLNLTQSQMCAGI-ISESFYSKVEHDKSDLSFDKLLAILKAHNISLYD 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI-IELVRSIVSSEK 131 FF+V + + + QL R ++ + + I L+ + + + Sbjct: 60 FFEVFDEENLPKVKLRKQIYTAFNNRNINQLKRIKKSLNKKDTIESLKINLM--LATLNQ 117 Query: 132 KYRTIEEECMVE 143 + I EE E Sbjct: 118 QVYEIPEEIQKE 129 >gi|188591420|ref|YP_001796019.1| putative transcriptional regulator, XRE family [Cupriavidus taiwanensis] gi|170938815|emb|CAP63813.1| putative transcriptional regulator, XRE family [Cupriavidus taiwanensis LMG 19424] Length = 120 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 47/133 (35%), Gaps = 15/133 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P R+R R G++Q +L + G+ + +E G + L+ Sbjct: 1 MSQSTPPPTSPSAVFPSRLRTAREYRGLNQGELAQKAGMQPSAISHFETGTRKPSFDNLR 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +++ L+ + DF + +L+R++ + R+ Sbjct: 61 ILADSLDVTTDYLLGRVE--------------DFKALAGADRLHRHYGSL-QPSDRKMAD 105 Query: 121 ELVRSIVSSEKKY 133 +L+ + ++ Sbjct: 106 DLITMLAKRAQEK 118 >gi|319936892|ref|ZP_08011303.1| hypothetical protein HMPREF9488_02137 [Coprobacillus sp. 29_1] gi|319807991|gb|EFW04566.1| hypothetical protein HMPREF9488_02137 [Coprobacillus sp. 29_1] Length = 375 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 38/91 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R ++QE+L E L ++ Q + ++E N L ++ + E + Sbjct: 1 MTLGKRIQYYRKRKQLTQEELAEKLMVSRQAISRWESDNNEPDVKTLLILANIFEITVDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + + + EN D I L Sbjct: 61 LVRENEVNIDNQNIIENGSEDIIIHQQEEIL 91 >gi|226310383|ref|YP_002770277.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226093331|dbj|BAH41773.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 189 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 29/77 (37%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P V + VG ++ R +S E L E G++ + E+G L Sbjct: 1 MNPETDDPKQVVLQVGGVLKKIRKEKHLSLEDLSELSGVSKLTLGNIERGETNPTIGVLW 60 Query: 61 HISEVLESPISFFFDVS 77 IS+ L P+ F Sbjct: 61 KISKCLSIPLLALFSTE 77 >gi|255308106|ref|ZP_05352277.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 141 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 29/69 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + ++ R I +QE+L E L ++ Q + K+E G + ++++ + Sbjct: 1 MINENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDL 60 Query: 74 FDVSPTVCS 82 + S Sbjct: 61 VNHSEEKTG 69 >gi|321272346|gb|ADW80227.1| putative transcriptional regulator [Wolbachia endosymbiont wVitB of Nasonia vitripennis phage WOVitB] Length = 236 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 12/139 (8%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+ +G +I R++ G +Q KL +G+T +++ +E G + I+ L Sbjct: 23 SVNYELGXKIEGCRIVQGYTQAKLASKIGLTHKEIHNFELGCKAITIKESYIIAGALSVN 82 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV-- 127 + + N + + L + +I D ++R+K+ LVR + Sbjct: 83 VVDLL-------PGPTVLRENGWYEDEDKEIVYLTKIHREIKDQELRKKLYPLVRFVYIS 135 Query: 128 ---SSEKKYRTIEEECMVE 143 S E+ + + E Sbjct: 136 EKISQEEAKIEVARNLVKE 154 Score = 37.1 bits (84), Expect = 0.90, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 28/54 (51%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + + VGKRI+ +R+I +QE L +G T +++ YE+G + + Sbjct: 182 DSILYKVGKRIKEQRLIREYTQEDLANKIGSTPKEIHDYERGYTDIPICNSLDL 235 >gi|229918124|ref|YP_002886770.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229469553|gb|ACQ71325.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 179 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 37/90 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+ I+ R+ G++QE+L E ++ + + E+ ++ L + VL S Sbjct: 1 MEVGQNIKRLRIKKGLTQEELAERTDLSKGYISQIERDLSSPSLETLFDLLNVLGSSPKE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 FFD + ++ + + Sbjct: 61 FFDEELNQKVVYTVDDRTIYTDEERKYRTE 90 >gi|148263053|ref|YP_001229759.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396553|gb|ABQ25186.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 181 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ RMI ++QE+L +T + + E + L+ I +V + Sbjct: 1 MKIGERLKRLRMINSLTQEELASRADLTKGYISQLENDATSPSIATLKDIIDVFGVSMQE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + ++L Sbjct: 61 FFSEVTDEDIVFGKDARVQATDDDDKIKVELL 92 >gi|238755351|ref|ZP_04616693.1| hypothetical protein yruck0001_7650 [Yersinia ruckeri ATCC 29473] gi|238706386|gb|EEP98761.1| hypothetical protein yruck0001_7650 [Yersinia ruckeri ATCC 29473] Length = 123 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLESP 69 V KR++ R G+SQEKL E +GI ++ YE G N + I++ L+ P Sbjct: 1 MVPKRLKAAREAAGLSQEKLAELVGIEGVSLNSRLSNYEVGRNTPSFDFIVRIAKALDYP 60 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPD--GLQLNRYFIQIDDVKVR--QKIIELV 123 S+F+ + V I + + + P R + D + ++++E + Sbjct: 61 ESYFYTIDDDVAEAILQFHRHKNNAVLNPFYDAQDDARKYKTSLDEAKKMVERLLEFI 118 >gi|223933458|ref|ZP_03625443.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|330831854|ref|YP_004400679.1| XRE family transcriptional regulator [Streptococcus suis ST3] gi|223897896|gb|EEF64272.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|329306077|gb|AEB80493.1| transcriptional regulator, XRE family [Streptococcus suis ST3] Length = 121 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 34/79 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++IR+ R +SQ++L E L I+ Q V K+E G +L ++E+ + + Sbjct: 3 QLAQQIRILRTAKNLSQDELAEKLYISRQAVSKWENGEATPDIDKLVQLAEIFGVSLDYL 62 Query: 74 FDVSPTVCSDISSEENNVM 92 + + + Sbjct: 63 VLGKEPEKEIVVEQRGKMN 81 >gi|213019782|ref|ZP_03335585.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994612|gb|EEB55257.1| transcriptional regulator, putative [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 328 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 55/139 (39%), Gaps = 12/139 (8%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V +GK+I R++ G +Q KL +G+T +++ +E G + I+ L Sbjct: 23 SVSYELGKKIEGCRIVQGYTQAKLASKIGLTHKEIHNFELGCKAITIKESYIIAGALSVN 82 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV-- 127 + + N + + L + +I D ++R+K+ LVR + Sbjct: 83 VIDLL-------PGPTVLRENSWYEDEDKEIVYLTKIHREIKDQELRKKLYPLVRFVYIS 135 Query: 128 ---SSEKKYRTIEEECMVE 143 S E+ + + + E Sbjct: 136 EKISQEEAKIEVAKNLVKE 154 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 33/65 (50%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + VGKRI+ +R+I +QE L +G T +++ YE+G + L I++ L Sbjct: 182 DSILYKVGKRIKEQRLIREYTQEDLANKIGSTPKEIHDYERGYTDIPIEILYKIAKTLSV 241 Query: 69 PISFF 73 I Sbjct: 242 NIKAL 246 >gi|217979885|ref|YP_002364032.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] gi|217505261|gb|ACK52670.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] Length = 477 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 1/125 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ +R RR L + Q + LGI+ + + E + A+ L ++ VL+ ++ +D Sbjct: 7 GQILRRRREELSLPQALVARRLGISPSYLNQIESDQRPLTAAILVEVTRVLKLQVADLYD 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 P + E + F + + + + +++L S E++YR Sbjct: 67 DGPERLAANLREMLSDPLFEHASVSGRELKAISAAA-PHLVRAMLDLHSSYRRMEERYRG 125 Query: 136 IEEEC 140 +++ Sbjct: 126 LDDAL 130 >gi|326804313|ref|YP_004322131.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651167|gb|AEA01350.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 328 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 35/95 (36%), Gaps = 1/95 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE+L + L ++ Q + K+E+ ++ ++ + + Sbjct: 1 MILADKILHLRKQAGWSQEELAQQLNVSRQSISKWERAEAIPDLEKILDLARIFGVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + +E + + ++ F Sbjct: 61 LIKDELDQVDYSAGDEGPLEAGLP-KLSIEEANAF 94 >gi|326388271|ref|ZP_08209874.1| transcription regulator, putative [Novosphingobium nitrogenifigens DSM 19370] gi|326207437|gb|EGD58251.1| transcription regulator, putative [Novosphingobium nitrogenifigens DSM 19370] Length = 197 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 32/83 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+ R G+SQ L + Q+ + E + L+ I L ++ FF Sbjct: 11 VGQRLLELRRRAGLSQRALAARADVPHAQISQIESNRISPSIASLRRILGGLGLSMAEFF 70 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 + + + ++D S Sbjct: 71 EPERKEADQVFFRTDELVDLTSE 93 >gi|291521013|emb|CBK79306.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 345 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 40/90 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G I+ R GM+QE++ LG+T V K+E ++ L I+ +L+ + Sbjct: 1 MDIGVVIKKYRKEAGMTQEEMANRLGVTTPAVNKWENSNSKPDIELLAPIARLLDISLDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + E MD + + +G + Sbjct: 61 LLSFHENLSDTEIEEIIRKMDRMFSEEGYE 90 >gi|291279358|ref|YP_003496193.1| transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290754060|dbj|BAI80437.1| transcriptional regulator [Deferribacter desulfuricans SSM1] Length = 186 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 3/113 (2%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K N + +G+++R R G S +L + +G T + E G + L+ I+ Sbjct: 2 KNKNNI---LGEKLRNLRKSQGYSLNQLAKAVGKTKSYISMIENGKAVPSMATLKSITNF 58 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 IS + + D ++ I + ++ K Sbjct: 59 FNVTISDLLEENEKDIHLNKESFIFEKDAELIYSKKDFYNLYLLIKNPLLKMK 111 >gi|258516973|ref|YP_003193195.1| helix-turn-helix domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257780678|gb|ACV64572.1| helix-turn-helix domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 383 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 7/134 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +R R G +Q ++ + GI+ + E G S LQ+I+ + + Sbjct: 4 KIIGANLRRIREAKGWTQSQVADLAGISRVAYRNIENGNTTPKVSTLQNIASAVGVKLQD 63 Query: 73 FF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 F + + L Y ++ + + +L R + S Sbjct: 64 LFIPVRTLKGVRFRASKKMNSRDNILTEVAHWLDDFNYLERLLNDHKDYQFEDLTRELSS 123 Query: 129 S---EKKYRTIEEE 139 + + + E Sbjct: 124 MPPGDDRAKHAAER 137 >gi|225405572|ref|ZP_03760761.1| hypothetical protein CLOSTASPAR_04793 [Clostridium asparagiforme DSM 15981] gi|225042882|gb|EEG53128.1| hypothetical protein CLOSTASPAR_04793 [Clostridium asparagiforme DSM 15981] Length = 81 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 34/74 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + P+ V++ G +R R +QE+ + GI+ + E+G + V R + I++ Sbjct: 8 RDPDNVNVRFGNELRKMREARRYTQEEFAQLCGISRAYYGRLERGEHSVTLERCKQIADA 67 Query: 66 LESPISFFFDVSPT 79 L +S F P Sbjct: 68 LNLTLSDLFINLPD 81 >gi|254516541|ref|ZP_05128600.1| transcriptional regulator, XRE family [gamma proteobacterium NOR5-3] gi|219674964|gb|EED31331.1| transcriptional regulator, XRE family [gamma proteobacterium NOR5-3] Length = 186 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 5/117 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +G+R+ R + M+ E+L G++ + + E+ + Q I++ Sbjct: 1 MTDSTSRLLGERVSQLRQLQSMTLEQLAAASGVSRSMLSQIERCKANPTLAVTQRIAQTF 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 I D S ++ +L + +K IE Sbjct: 61 GISIGELVDDPNASASIDVVRGDDPGTVFRADSECEL-----RTLSPLQLEKNIEFY 112 >gi|125717050|ref|YP_001034183.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125496967|gb|ABN43633.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 150 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 16/132 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R+ G +Q +L E L ++ V K+E N L++++ + Sbjct: 4 VGERIKKLRIAQGFTQARLAEILHVSKAAVCKWESNTNLPKVMELKNMNSPFHVSADYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV-------RSIV 127 ++ + E + Y Q++ + +Q I+ V ++ Sbjct: 64 GLANRSAIEQLGSE---------KKLKAMAGYLHQLESPERKQACIDFVISQFNEQEAVK 114 Query: 128 SSEKKYRTIEEE 139 +K + +E Sbjct: 115 IEAEKIQRALDE 126 >gi|26988969|ref|NP_744394.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24983786|gb|AAN67858.1|AE016417_6 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 197 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 39/115 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+R R M+ ++L E G+ + K E V +L + L I+ F Sbjct: 13 VGQRLRQVRKARQMTLKQLSEASGVPLSTLSKMELAQVSVSYEKLAAAARALNVDIAQLF 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S TV + + + Y+ D R+ R I Sbjct: 73 RASGTVSAPVPVTVVVDSLPAAAGYSTGTYDYYPIAGDFPARRMTPAYARIIARE 127 >gi|24379268|ref|NP_721223.1| transcription regulator [Streptococcus mutans UA159] gi|24377185|gb|AAN58529.1|AE014922_4 hypothetical protein; putative transcriptional regulator [Streptococcus mutans UA159] Length = 296 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 28/66 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R LG+SQEKL E L I+ Q + K+E G L +S+ + I Sbjct: 8 RLRDYRKQLGLSQEKLAEELHISRQAITKWESGAGTPDVVNLMALSDFFQVSIDQLLFGK 67 Query: 78 PTVCSD 83 Sbjct: 68 EANRQS 73 >gi|148548701|ref|YP_001268803.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512759|gb|ABQ79619.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 197 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 39/115 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+R R M+ ++L E G+ + K E V +L + L I+ F Sbjct: 13 VGQRLRQVRKARQMTLKQLSEASGVPLSTLSKMELAQVSVSYEKLAAAARALNVDIAQLF 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S TV + + + Y+ D R+ R I Sbjct: 73 RASGTVSAPVPVTVVVDSLPAAAGYSTGTYDYYPIAGDFPARRMTPAYARIIARE 127 >gi|94313037|ref|YP_586246.1| XRE family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93356889|gb|ABF10977.1| transcriptional regulator, Xre/Cro/CI family [Cupriavidus metallidurans CH34] Length = 212 Score = 51.0 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 54/146 (36%), Gaps = 8/146 (5%) Query: 2 VGNKKIPNPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 + K+ PV + +R+ R + G++ E+L + +T + K E+G++ + Sbjct: 15 MSKKQKVEPVAAEPSIAERLAELRKLNGLTLEELAQRASLTKSYLSKLERGLSSPTIGTV 74 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +++ L + S + + + F +P +L + I + + + Sbjct: 75 LKLADALGVTVDQLITRSSRANEILHIRAADRIPF--SPSTERLGYTYEAIATERPDKAM 132 Query: 120 IELVR----SIVSSEKKYRTIEEECM 141 + ++ + EE + Sbjct: 133 QPFIMVPPFTLEEDQPMASHAGEELI 158 >gi|315652455|ref|ZP_07905442.1| cro/CI family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315485293|gb|EFU75688.1| cro/CI family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 177 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 49/112 (43%), Gaps = 3/112 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R++ G++QE+L + ++ + + E + + L I + L I Sbjct: 1 MDIGSKLKRLRVLAGLTQEELADRAELSKGFISQLENNITSPSIATLLDILQCLGVQIKD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 FFD + E+ + + + ++ I + + I++++ Sbjct: 61 FFDEETETQVVFTEEDYFIKE---DKELNNTVKWIIPNAQKNMMEPILQIIE 109 >gi|293374899|ref|ZP_06621200.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|325843168|ref|ZP_08167854.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|292646502|gb|EFF64511.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|325489412|gb|EGC91782.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 194 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 36/86 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK + R M+Q+++ E + I+ + + K+E+G+ S L +S++ I Sbjct: 4 VKVGKLLYDLRKEKNMTQKQVAELMNISDKTISKWERGLGCPDVSLLPELSQIFGVSIDG 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 + + F+ + Sbjct: 64 ILSGELNQNPVVGGNMRRLKFFVCSQ 89 >gi|46906984|ref|YP_013373.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|46880250|gb|AAT03550.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] Length = 169 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLLGE 63 >gi|322434732|ref|YP_004216944.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321162459|gb|ADW68164.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 177 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 7/120 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I V +R R + +SQ +L + + + K E G S L ++ LE IS Sbjct: 63 IQVATAVRDLRHVRNLSQRQLAARMNVPRTYISKIENGKAMPTLSSLDRLARALEVDISA 122 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 +PT +N + T L + D R + VR + + ++ Sbjct: 123 LLRDAPTR-------HSNETAMLVTDPFLAEIAAYTSQLDSLQRSIFLNHVRELAAGRRR 175 >gi|293608302|ref|ZP_06690605.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828875|gb|EFF87237.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 197 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 37/96 (38%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++I + +++R R+ G + + L ++ + E+G A L+ ++ L P Sbjct: 3 DINIRIAQQVREIRLARGYTLDILASRCQVSRSAISLIERGEASPTAVVLEKLANGLGVP 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 ++ FD P S P+ + R Sbjct: 63 LTQLFDSPPNTQSPQPMVRRTQQAEWKDPETGYIRR 98 >gi|294085034|ref|YP_003551794.1| helix-turn-helix domain-containing protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664609|gb|ADE39710.1| helix-turn-helix domain protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 131 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 4/118 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G RI R +G+S L +G+ + +E + ++L ++ +L Sbjct: 16 IDSTLGGRIFKCREQVGLSLNMLAHLVGVNPSTLASWENDSSEPRVNKLVSMAGILGVSP 75 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST--PDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 ++F S IS + ++N + K +KI L++ + Sbjct: 76 TYFIAEEGHSGSATKPARGRTGKLISNLKSEINEINEEQKILS--KRLKKINLLIQKL 131 >gi|289547795|ref|YP_003472783.1| transcriptional regulator of molybdate metabolism, XRE family [Thermocrinis albus DSM 14484] gi|289181412|gb|ADC88656.1| transcriptional regulator of molybdate metabolism, XRE family [Thermocrinis albus DSM 14484] Length = 329 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G+SQE+L + I + E+ + S I+ L + F Sbjct: 3 NRVKELRERAGLSQEELAKLCKIPRTTLSAIEREMVVPSVSHAIRIARALGCSVEELFPQ 62 Query: 77 SP 78 Sbjct: 63 EE 64 >gi|254497907|ref|ZP_05110672.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254352905|gb|EET11675.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 78 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P + +G +IR R G SQE G+ + E+G + A L I++ L Sbjct: 2 KKDPQLLKLGNKIREMRKAHGFSQEAFASESGVDRSYMGSVERGERNIAALNLIKIAQAL 61 Query: 67 ESPISFFF 74 + F Sbjct: 62 NVEVGELF 69 >gi|255018407|ref|ZP_05290533.1| hypothetical protein LmonF_13171 [Listeria monocytogenes FSL F2-515] Length = 163 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLLGE 63 >gi|218663328|ref|ZP_03519258.1| probable transcriptional regulator protein, LacI family [Rhizobium etli IE4771] Length = 190 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 2/93 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + ++ +G RIR R+ G++ + L G++ + + E+ AS L I L Sbjct: 1 MEQQLEQAIGIRIRTLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAAL 60 Query: 67 ESPISFFF--DVSPTVCSDISSEENNVMDFIST 97 +S FF + E+ D + Sbjct: 61 GLSLSAFFAEEGQQASPLARRQEQQVWRDPENR 93 >gi|254254750|ref|ZP_04948067.1| DNA-binding protein [Burkholderia dolosa AUO158] gi|124899395|gb|EAY71238.1| DNA-binding protein [Burkholderia dolosa AUO158] Length = 201 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 11/146 (7%) Query: 1 MVGNKKIPNPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 MV + + P D +G +IR R L + ++ GI+ + + E+G+ + Sbjct: 9 MVPSTENSRPADAAAALGGKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTS 68 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 L I+ L + +F D S E+ F + F ++ +V ++ Sbjct: 69 LAGIAHALGVTVQYFVDTPSEERSVCRGEQLRFFGFADS------ANLFARLTNVSEGRQ 122 Query: 119 IIELVRSIVSSEKKYR---TIEEECM 141 + ++ + +K+ EE + Sbjct: 123 LEAILVRMPPGQKRSEVTTHAGEEFL 148 >gi|108805301|ref|YP_645238.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766544|gb|ABG05426.1| transcriptional regulator, XRE family with cupin sensor [Rubrobacter xylanophilus DSM 9941] Length = 220 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 26/73 (35%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G IR R+ G++ + I+ + K E G + +++ L +S Sbjct: 25 DQYLGNFIRKYRLEKGLTLSDISARASISKSMLSKIENGQASPSLHTIARLAQALGVTLS 84 Query: 72 FFFDVSPTVCSDI 84 F + Sbjct: 85 TMFSNYDIPSDNA 97 >gi|56695338|ref|YP_165686.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56677075|gb|AAV93741.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 193 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 5/94 (5%) Query: 1 MVGNK-KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M + P+ +G R+R R G++ ++L G++ + + E+ L Sbjct: 1 MSETAPRQTTPI---IGTRMRELRKARGLTLKQLAAATGLSIGYLSQLERQAADPSVRAL 57 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 IS L I++FF P SD ++ D Sbjct: 58 NVISTALGVGINWFF-PDPDTVSDPEADLVVRAD 90 >gi|86137418|ref|ZP_01055995.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85825753|gb|EAQ45951.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 133 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 11/121 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R M+Q +L LG+ + +E+ ++ A++L +S +L +S+ Sbjct: 17 GDRVAAAREAADMTQAQLARRLGVKKTTLMGWEQDLSEPRANKLSMVSGLLNVSMSWLLT 76 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S+ S + +V DF L+ R ++ + EKK RT Sbjct: 77 GEGEGMSEPSEMDLDVGDFAGVLQELRALRNEMRSN-----------AERAARLEKKLRT 125 Query: 136 I 136 + Sbjct: 126 L 126 >gi|325290667|ref|YP_004266848.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966068|gb|ADY56847.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 199 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 35/92 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R +SQE L + +G++ Q V K+E + ++ +SE + + Sbjct: 1 MNIADRIQNLRKAKAISQEDLADKVGVSRQAVSKWESEQSVPDLDKIIIMSEYFDVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + + L Sbjct: 61 ILKGIEPALNNQGTHGVLTSKILYISSSAFLA 92 >gi|319647196|ref|ZP_08001418.1| immunity repressor protein [Bacillus sp. BT1B_CT2] gi|317390543|gb|EFV71348.1| immunity repressor protein [Bacillus sp. BT1B_CT2] Length = 147 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 8/140 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R G +Q +L E ++ V E+ L I++ L P+S Sbjct: 1 MSVGQRLKYWRKQKGYTQAQLAEKANMSRSYVADVERDRYNPSVETLSSIAKALNIPVSN 60 Query: 73 FFDVS--------PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + + E++ L+ + + I L+ Sbjct: 61 LLEDNQRLVSESPEEYRTSEKDEKDIAKRMEQIKKDLKNAEGLSFSGEPMSDEAIESLLE 120 Query: 125 SIVSSEKKYRTIEEECMVEQ 144 ++ + ++ + I ++ + ++ Sbjct: 121 AMEYAVRQTQRINKKYIPKK 140 >gi|313498050|gb|ADR59416.1| Helix-turn-helix domain-containing protein [Pseudomonas putida BIRD-1] Length = 129 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 6/112 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R LGM+Q G+ G+ KYE G L ++ + Sbjct: 4 IGPRLREERERLGMTQRVFGDIGGVEPNAQGKYESGERTPRLDYLAALAT-RGVDALYVL 62 Query: 75 DVSPTVCSDISSEENNV-----MDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 T + + + + D L ++ + ++I+ Sbjct: 63 SGLRTPAALEGLNADESGLLGAFRKLRSEDQAALLHLLGRLANDATPRQIVR 114 >gi|326792010|ref|YP_004309831.1| cupin [Clostridium lentocellum DSM 5427] gi|326542774|gb|ADZ84633.1| Cupin 2 conserved barrel domain protein [Clostridium lentocellum DSM 5427] Length = 179 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 37/76 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I R G++QE+L + ++ + + E+G+ + L I E L + + Sbjct: 1 MDIGAKINQLRKKNGLTQEELADRCELSKGFISQVERGLTSPSIATLIDILECLGTNLKD 60 Query: 73 FFDVSPTVCSDISSEE 88 FF+ S + E+ Sbjct: 61 FFNESSQEKIVFTKED 76 >gi|295425417|ref|ZP_06818113.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM 11664] gi|295064868|gb|EFG55780.1| conserved hypothetical protein [Lactobacillus amylolyticus DSM 11664] Length = 143 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 35/80 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ ++I R SQE L E + ++ Q V K+E G + ++ +SE+ + Sbjct: 14 MNLNQKITQLRNDKKWSQEDLAEKINVSRQSVSKWESGQTKPDLDKIIVLSEIFNVSTDY 73 Query: 73 FFDVSPTVCSDISSEENNVM 92 ++ S+ ++ Sbjct: 74 LLKDDEKEINNASTNKHRFN 93 >gi|163759848|ref|ZP_02166932.1| hypothetical protein HPDFL43_16496 [Hoeflea phototrophica DFL-43] gi|162282806|gb|EDQ33093.1| hypothetical protein HPDFL43_16496 [Hoeflea phototrophica DFL-43] Length = 205 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 28/70 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ +G R+R R+ G+ + + + + K E G + L I++VL IS Sbjct: 21 DVLIGARLRHMRIASGLKLKDVAAAADCSESMLSKVETGHVSPSINMLHRITKVLNVNIS 80 Query: 72 FFFDVSPTVC 81 F Sbjct: 81 GLFAPVEETS 90 >gi|308071595|ref|YP_003873200.1| transcriptional regulator yazB [Paenibacillus polymyxa E681] gi|305860874|gb|ADM72662.1| Putative HTH-type transcriptional regulator yazB [Paenibacillus polymyxa E681] Length = 114 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G +QE+L E G+ + + E+G + L+ I L P F Sbjct: 7 VGNRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERGDRNISLETLEKIILALNVPAFELF 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 D N +M I++ + +L Sbjct: 67 QFDENT--DRKQIINELMLLINSRETTEL 93 >gi|293384665|ref|ZP_06630522.1| putative helix-turn-helix protein [Enterococcus faecalis R712] gi|293389067|ref|ZP_06633541.1| putative helix-turn-helix protein [Enterococcus faecalis S613] gi|312908458|ref|ZP_07767414.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312979359|ref|ZP_07791054.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|291078027|gb|EFE15391.1| putative helix-turn-helix protein [Enterococcus faecalis R712] gi|291081593|gb|EFE18556.1| putative helix-turn-helix protein [Enterococcus faecalis S613] gi|310625570|gb|EFQ08853.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311287864|gb|EFQ66420.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 204 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R ++QE+L E L ++ + K+E G L+ IS+ I Sbjct: 5 EKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNIESLKCISKFFFVTIDELLSG 64 Query: 77 SP 78 Sbjct: 65 EE 66 >gi|238923480|ref|YP_002936996.1| hypothetical protein EUBREC_1100 [Eubacterium rectale ATCC 33656] gi|238875155|gb|ACR74862.1| Hypothetical protein EUBREC_1100 [Eubacterium rectale ATCC 33656] Length = 123 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 29/88 (32%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR R +Q + L I+ + E G L HI++ + + + Sbjct: 9 KELGERIRKLRFKRNKTQSYFADMLYISPSYLALIESGKRVPNLDLLIHIAKFTDVTLDY 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG 100 C + N + D Sbjct: 69 LVFGDDPNCDPLQMTFNRLYDSYDKKQM 96 >gi|221234777|ref|YP_002517213.1| MerR family transcriptional regulator [Caulobacter crescentus NA1000] gi|220963949|gb|ACL95305.1| transcriptional regulator, MerR family [Caulobacter crescentus NA1000] Length = 480 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 6/127 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K N + +G R++ R LG++Q ++ E LG++ + E+ V A L Sbjct: 1 MATLEKKQNDKKLFLGGRLKRLRRDLGVTQARMAEELGVSASYLNLLERNQRPVTAQILL 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISS--EENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 +++ + + P + + + D + + + Sbjct: 61 RLADAYDLDLRSLSADDPGGGAGLEEVLADRMFADLAVSRHEAAEVAEL----SPGIAEA 116 Query: 119 IIELVRS 125 + L R+ Sbjct: 117 MSRLYRA 123 >gi|13475454|ref|NP_107018.1| hypothetical protein mlr6529 [Mesorhizobium loti MAFF303099] gi|14026206|dbj|BAB52804.1| mlr6529 [Mesorhizobium loti MAFF303099] Length = 514 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 2/128 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R G++Q + E LGI+ + E+ + + ++ V + Sbjct: 41 GPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQRPLTVQLILKLASVYKVDPHELQG 100 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + + + + P +L + +I+L R+ ++ Sbjct: 101 EARGSVAALKEVFTDPLLVGELPGDQELIELAEAAPNASA--AVIKLFRAYREQAERLSD 158 Query: 136 IEEECMVE 143 + E E Sbjct: 159 LNELLARE 166 >gi|317502031|ref|ZP_07960214.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|316896573|gb|EFV18661.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] Length = 293 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 31/68 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R G+SQEK+ E +G++ Q + K+E G + L I+ + + + Sbjct: 5 EQIKYYRKQAGLSQEKMAEKIGVSRQAITKWENGTGTPDIANLMAIANLFQISVDELLSN 64 Query: 77 SPTVCSDI 84 + Sbjct: 65 EKSEKKQS 72 >gi|291483679|dbj|BAI84754.1| hypothetical protein BSNT_01998 [Bacillus subtilis subsp. natto BEST195] Length = 123 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 10/127 (7%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D GK + R G S+ + + LG+ +E G+ + L I+ + Sbjct: 1 MDNITGKVLTELREKKGWSKSLVAKKLGLKTMSTYANWEYGLRKPDGEMLVKIANLYGVT 60 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + N+ + LQ+ + R++ I+ ++ + Sbjct: 61 TDYILTG---------KRPNSFNSDLFEDPDLQIAFKDASDFSEEARRQAIDFIKYLKEK 111 Query: 130 EKKYRTI 136 EK ++ Sbjct: 112 EKSRKSP 118 >gi|228986720|ref|ZP_04146850.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773051|gb|EEM21487.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 262 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKGKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSDISS 86 + ++ Sbjct: 64 ETAEKSNENVD 74 >gi|168181353|ref|ZP_02616017.1| MATE efflux family protein [Clostridium botulinum Bf] gi|182675343|gb|EDT87304.1| MATE efflux family protein [Clostridium botulinum Bf] Length = 147 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R G S ++ E G++ + + E + A LQ I+ L +S Sbjct: 1 MKLGEKIRSIRKKKGYSILQIKELTGLSKSTISELENDKSSPTAETLQKIATALNVHVSD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 FF+ S S+ + + Sbjct: 61 FFNDSKETLSEDMNHYYEAEQQKHSRR 87 >gi|229541873|ref|ZP_04430933.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229326293|gb|EEN91968.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 180 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 41/75 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + K+IR R+ G++ ++L E +T + + E+G + + + L+ I++ L IS+ Sbjct: 2 IEIHKKIRELRLQKGLTLKQLSEKTNLTIGFLSQVERGTSSLAITSLKKIADSLGVEISY 61 Query: 73 FFDVSPTVCSDISSE 87 FF+ + T + E Sbjct: 62 FFNPTITAHYAVKKE 76 >gi|269838403|ref|YP_003320631.1| hypothetical protein Sthe_2392 [Sphaerobacter thermophilus DSM 20745] gi|269787666|gb|ACZ39809.1| protein of unknown function DUF955 [Sphaerobacter thermophilus DSM 20745] Length = 406 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G++QE+ LG+T + +E G L ++E+ + ++ Sbjct: 7 LGARLRAAREWAGLTQEEAASALGVTHALISYWENDRRTPGLGHLTRLAEIYGTTVTNLL 66 Query: 75 DVS-PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 D + + + ++ ++L ++ +DD Sbjct: 67 DPAHEEPAGPQPALLFRDLRDLAPQTQVRLRQWIAFLDD 105 >gi|242243266|ref|ZP_04797711.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis W23144] gi|242233215|gb|EES35527.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis W23144] Length = 189 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NV +I+ R G SQE L E + ++ Q + +E + L + ++ + + Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDE 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGL 101 + +I E + + P L Sbjct: 61 LVEDDLKNVQIKNIKKELDFWTWMMIIPMVL 91 >gi|153810274|ref|ZP_01962942.1| hypothetical protein RUMOBE_00655 [Ruminococcus obeum ATCC 29174] gi|149833453|gb|EDM88534.1| hypothetical protein RUMOBE_00655 [Ruminococcus obeum ATCC 29174] Length = 124 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 43/83 (51%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + ++IR R G+SQE L E GI ++KYE G+ + +L+ I++ LE + Sbjct: 26 DMEINEKIRYFRKQRGLSQELLAERTGINVNTIRKYEIGIRKPKVEQLKKIADGLEISVI 85 Query: 72 FFFDVSPTVCSDISSEENNVMDF 94 F D+ +D+ + + F Sbjct: 86 EFLDIEIENEADLIAMLKKISPF 108 >gi|15675661|ref|NP_269835.1| hypothetical protein SPy_1834 [Streptococcus pyogenes M1 GAS] gi|71911371|ref|YP_282921.1| transcriptional regulator [Streptococcus pyogenes MGAS5005] gi|13622874|gb|AAK34556.1| hypothetical protein SPy_1834 [Streptococcus pyogenes M1 GAS] gi|71854153|gb|AAZ52176.1| transcriptional regulator [Streptococcus pyogenes MGAS5005] Length = 195 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQEKL E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQIIRYRKQQALSQEKLAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + T + L Sbjct: 61 LIKGDIEKMKYTITQVDKKNFKRDTKVMVTLM 92 >gi|328464227|gb|EGF35672.1| transcriptional regulator xre family protein [Lactobacillus rhamnosus MTCC 5462] Length = 236 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 11/115 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++INVG I R G++QE L + +G++ V K+E G + + L ++ + I Sbjct: 1 MEINVGAVISAFRKQKGVTQEALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + L + F +V I L+R Sbjct: 61 DQLMAYDAQLQPSEI-----------RRIYTSLKQAFETQPPARVLTSIRNLIRR 104 >gi|260427903|ref|ZP_05781882.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260422395|gb|EEX15646.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 131 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 2/131 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P G RI R GM QEKL LG+ + +Q +E ++ A+RLQ Sbjct: 1 MTDTTDWYGPDAATFGDRIAAAREAAGMGQEKLARRLGVKLKTLQGWENDLSEPRANRLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKI 119 ++ +L + + S E + ++ L++ +I R ++ Sbjct: 61 MLAGLLNVSMGWLLTGEGEGLSGPGDTEPALPADVNEAL-LEIRALKTEIQTAGDRLGRL 119 Query: 120 IELVRSIVSSE 130 + +R ++ E Sbjct: 120 EKTLRRLLKDE 130 >gi|222147627|ref|YP_002548584.1| transcriptional regulator [Agrobacterium vitis S4] gi|221734615|gb|ACM35578.1| transcriptional regulator [Agrobacterium vitis S4] Length = 469 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 2/128 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R LG++Q + E LGI+ + E+ + L ++ V + + Sbjct: 9 GPRVRRVRNGLGLTQTAMAEALGISPSYLNLIERNQRPLTVQLLLKLASVYKVDLEELQG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + + + P +L + + +++L R+ K+ Sbjct: 69 DAGGGSVPLREVFADPLLAGEIPGDQELIEFAEAAPNAAS--GVVKLYRAYREQAKRLSD 126 Query: 136 IEEECMVE 143 + E E Sbjct: 127 LAELLARE 134 >gi|167747596|ref|ZP_02419723.1| hypothetical protein ANACAC_02317 [Anaerostipes caccae DSM 14662] gi|239625078|ref|ZP_04668109.1| predicted protein [Clostridiales bacterium 1_7_47_FAA] gi|167652958|gb|EDR97087.1| hypothetical protein ANACAC_02317 [Anaerostipes caccae DSM 14662] gi|239521464|gb|EEQ61330.1| predicted protein [Clostridiales bacterium 1_7_47FAA] Length = 113 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 39/102 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G ++R +R +S ++L E + +++ E G S L I +VL + ++ Sbjct: 9 KEFGAKLRGKRKECKLSYQELAERCHVNHGYIRQLEAGNKLPSVSLLFIICDVLGTSPNY 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 F + E + L + ++ ++ ++ Sbjct: 69 LFGYTEDNADKELLERIYQLTPEQKRVMLCILDAYLSLEKIE 110 >gi|126179337|ref|YP_001047302.1| hypothetical protein Memar_1391 [Methanoculleus marisnigri JR1] gi|125862131|gb|ABN57320.1| protein of unknown function DUF955 [Methanoculleus marisnigri JR1] Length = 342 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R+ G+SQ L E +G++ + KYE G + L +SE+L + + Sbjct: 1 MTIGERIKSARIGAGLSQRNLAEKMGLSAMAISKYENGEVTPRSGLLIQMSEMLGVNVDY 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|76798009|ref|ZP_00780267.1| phage repressor protein [Streptococcus agalactiae 18RS21] gi|76586632|gb|EAO63132.1| phage repressor protein [Streptococcus agalactiae 18RS21] gi|323127145|gb|ADX24442.1| repressor protein, putative [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 230 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GKR++ RR+ LG SQ +L + L I +E + S L+ ++ +L+ P ++F Sbjct: 4 GKRLKKRRITLGYSQSELADKLHINRSSYFNWENEKTKPNQSNLKQLAILLDVPETYF 61 >gi|332981863|ref|YP_004463304.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332699541|gb|AEE96482.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 132 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 2/119 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R +Q+ GIT + YE+G A L+ I+E+ + I + Sbjct: 5 LGDRLRRLREKKEWTQKYAATVFGITSGALSNYERGERTPDAEMLKRIAEIYDVSIDYLI 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVRSIVSSEK 131 S E+++ D+I G + +D D R+ +I ++ + + K Sbjct: 65 GKRSLRESSQYLNESSLDDYIEEIIGREAVLMLQSMDRLDEHERELLIIFLQGLKARRK 123 >gi|293365764|ref|ZP_06612471.1| xre family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|291315767|gb|EFE56213.1| xre family transcriptional regulator [Streptococcus oralis ATCC 35037] Length = 71 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R +SQ+ L + +G+ + +E G +++ ++++E I + Sbjct: 7 NRIRELRKKARLSQQALADQIGVFRNTISNWETGYSQISLENAKNVAEYFGVTIDYLLGS 66 Query: 77 SPTVC 81 Sbjct: 67 ESDQT 71 >gi|317132318|ref|YP_004091632.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315470297|gb|ADU26901.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 373 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G I R G++QE+L + LGI+ V K+E G + L ++ + Sbjct: 4 IQIGANIASLRKEKGVTQEELADYLGISKPAVSKWESGQSYPDILLLPRLAAYFNRTVDE 63 Query: 73 FF 74 Sbjct: 64 LL 65 >gi|218462689|ref|ZP_03502780.1| probable transcriptional regulator protein, LacI family [Rhizobium etli Kim 5] Length = 189 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 2/92 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + ++ +G RIR R+ G++ + L G++ + + E+ AS L I L Sbjct: 1 MEQQLEQAIGIRIRTLRLEKGLTLDDLATASGVSRAMISRIERAEASPTASLLARICAAL 60 Query: 67 ESPISFFF--DVSPTVCSDISSEENNVMDFIS 96 +S FF + E+ D + Sbjct: 61 GLSLSAFFAEEGQQASPLARRQEQQVWRDPET 92 >gi|113968668|ref|YP_732461.1| XRE family transcriptional regulator [Shewanella sp. MR-4] gi|113883352|gb|ABI37404.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. MR-4] Length = 191 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 47/134 (35%), Gaps = 5/134 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K G++ + + E+G + + L I+ + + Sbjct: 4 INSYLAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNTSL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S F + +P + + + +T L + + R +++ Sbjct: 64 STFLEPTPESQGAVFRNADALRQKPATDGML-----VASLFPFEPRFGFEMFELTLLPHY 118 Query: 131 KKYRTIEEECMVEQ 144 ++ E + E Sbjct: 119 ERLSEPHEAGVTEH 132 >gi|332298033|ref|YP_004439955.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181136|gb|AEE16824.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 331 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I + R G SQE+L + + ++ Q V K+E G ++ +S + Sbjct: 1 MKLAEKIEILRKRNGWSQEELADKVAVSRQSVSKWESGGAVPELDKILLLSTLFGVSTDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 +V ++ +S + L FI + R Sbjct: 61 LLKDDLSVSAEPASSAGEK---VLRRVSLPEAERFIAVSAAAAR 101 >gi|320160947|ref|YP_004174171.1| hypothetical protein ANT_15430 [Anaerolinea thermophila UNI-1] gi|319994800|dbj|BAJ63571.1| hypothetical protein ANT_15430 [Anaerolinea thermophila UNI-1] Length = 206 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 2/102 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G K +D VG+R+R R +S L G++ + E+G+ S L Sbjct: 1 MEGFDKQAESID--VGQRLRALREERNISIRALARLSGLSANALSMIERGMTSPSVSTLN 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ L+ P++ FF P + + + + ++ Sbjct: 59 KLAIALKVPVTAFFRTMPVKEAVVFRKASERTRIPFLRGMME 100 >gi|311031583|ref|ZP_07709673.1| transcriptional regulator [Bacillus sp. m3-13] Length = 295 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I++ R L +SQ +L E + T Q+ K EKG A+ L +I+E L I++F+ Sbjct: 6 IGKEIKVLRSALNLSQAELSEGI-CTQSQISKIEKGEVFPLANTLYYIAERLGVDINYFY 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D++ E + + + Sbjct: 65 DLATNPQLSYVKEVFTQVRELLNRSQFEEI 94 >gi|229550962|ref|ZP_04439687.1| XRE family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258538327|ref|YP_003172826.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|229315677|gb|EEN81650.1| XRE family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257150003|emb|CAR88975.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 373 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 41/115 (35%), Gaps = 11/115 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++INVG I R G++QE L + +G++ V K+E G + + L ++ + I Sbjct: 1 MEINVGAVISAFRKQKGVTQEALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + L + F +V I L+R Sbjct: 61 DQLMAYDAQLQPSEI-----------RRIYTSLKQAFETQPPARVLTSIRNLIRR 104 >gi|261344094|ref|ZP_05971738.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567684|gb|EFB73219.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 91 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N++ + +G+RI+ R+ G S + LG+ GI+ QQ+ +YE+GVNR+ L Sbjct: 1 MENERYKYSLS--IGQRIKSLRLQNGWSGDALGKVTGISQQQISRYERGVNRIDVESLAK 58 Query: 62 ISEVLESPISFFFDVSPTVCSDIS 85 + I D S Sbjct: 59 FANAFNVSIVVLLSDYDKTIYDKS 82 >gi|167464988|ref|ZP_02330077.1| transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 136 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 1/112 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK + R G+SQ ++ E LGI + +E + + L ++E + Sbjct: 4 GKTLIQLRESKGLSQYEVAEKLGIKRARYNSWENEIAKPRHDMLHKLAEFYNVSPDYLLG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVRSI 126 + S + Y+ I+ + R K+I +V ++ Sbjct: 64 YEKEKEAVPSWATTKDKRDLKKMLEDPDVLYYDGIEFSPEDRAKMIGIVEAV 115 >gi|27469327|ref|NP_765964.1| hypothetical protein SE2409 [Staphylococcus epidermidis ATCC 12228] gi|282874710|ref|ZP_06283589.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|27316877|gb|AAO06052.1|AE016752_85 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|281296426|gb|EFA88941.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|329724169|gb|EGG60687.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] Length = 189 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NV +I+ R G SQE L E + ++ Q + +E + L + ++ + + Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDE 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGL 101 + +I E + + P L Sbjct: 61 LVEDDLKNVQIKNIKKELDFWTWMMIIPMVL 91 >gi|313885235|ref|ZP_07818987.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619926|gb|EFR31363.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8] Length = 228 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 44/121 (36%), Gaps = 25/121 (20%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +++ RR +SQ L L I +E G + + L+H++++L +F Sbjct: 4 GDQLKRRRQERQLSQADLARQLNIARSSYYNWETGKTQPNQANLEHLAKLLLVTPDYF-- 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 +L + Q+ + + ++++ ++ +K+ + Sbjct: 62 ----------------------DQDYRLLHPYHQLQSAR-QDQVVDFTDQLLEEQKRAQA 98 Query: 136 I 136 Sbjct: 99 P 99 >gi|262273102|ref|ZP_06050919.1| hypothetical transcriptional regulator [Grimontia hollisae CIP 101886] gi|262222858|gb|EEY74166.1| hypothetical transcriptional regulator [Grimontia hollisae CIP 101886] Length = 123 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 10/108 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V KRI+ R G++Q K+ + L + Q E G L I+E+ E P+ +F Sbjct: 7 QVAKRIKEAREWKGITQVKMAKLLQVARQTYLDIETGKTEPRVRMLSEIAEITERPLVWF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 V + D D +L +F ++ R I+ Sbjct: 67 VYGDADV---------ELHDVQYKQDVNRLLEHFSKLPHEA-RTAILN 104 >gi|229160813|ref|ZP_04288804.1| hypothetical protein bcere0009_16030 [Bacillus cereus R309803] gi|228622661|gb|EEK79496.1| hypothetical protein bcere0009_16030 [Bacillus cereus R309803] Length = 145 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 38/81 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R G SQE + + +GIT Q V K+E + L +SE+ + Sbjct: 1 MSLGQQLKRLRESQGFSQEDVAKKVGITRQAVYKWENDKSCPDIENLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + I +E+ + Sbjct: 61 LIKGNQNLKEKIHIDEDTDFE 81 >gi|167041843|gb|ABZ06584.1| putative helix-turn-helix motif protein [uncultured marine microorganism HF4000_097M14] Length = 474 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 1/132 (0%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D+ +G +I+ +R LG+SQ + + L I+ + E G ++ L ++ L Sbjct: 2 SQIDLQIGYKIKSKRRSLGISQADMAKKLSISPSYLNLIESGKRKISVDLLLKVANELGI 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 IS + T + F + I + + +I+L + Sbjct: 62 EISDISKKTDTNLYQNLMDVLGDNLFEDLDITNFDIKEIIN-TSPLIAKALIKLGDNYKK 120 Query: 129 SEKKYRTIEEEC 140 ++ + E Sbjct: 121 KNQEIVSKVENI 132 >gi|21219711|ref|NP_625490.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|6468452|emb|CAB61612.1| putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 191 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 7/115 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+ V VG R+R R ++ L E GI+ + + E G+ R L I+ Sbjct: 3 TPDDVLAGVGPRLRQVRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIARAH 62 Query: 67 ESPISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + P+ P V + ++ G + F + + + R+ Sbjct: 63 QVPLDELVGAPPVGDPRVRARPVVRHGRTHWPLTRQAGG--LQAFKVL-EPQSRE 114 >gi|225851327|ref|YP_002731561.1| transcriptional regulator, xre family [Persephonella marina EX-H1] gi|225645748|gb|ACO03934.1| transcriptional regulator, xre family [Persephonella marina EX-H1] Length = 159 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 11/124 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R +LG+SQ + E +G + + VQ +E S L+ IS+ + + Sbjct: 4 IGQRIKQLRKMLGLSQREFAEKIGKSLRAVQNWEYEQRTPDESTLRLISQTFGVNLDWLK 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + ++ +L + +I +KI +V I+ + R Sbjct: 64 TGEGEMWVKDQDKSGVSIEPFE-----KLIQAINRI------EKIPSVVEKILKDYYEKR 112 Query: 135 TIEE 138 IEE Sbjct: 113 DIEE 116 >gi|210630657|ref|ZP_03296539.1| hypothetical protein COLSTE_00424 [Collinsella stercoris DSM 13279] gi|210160390|gb|EEA91361.1| hypothetical protein COLSTE_00424 [Collinsella stercoris DSM 13279] Length = 152 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 31/75 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ G RIR R G+ Q +L E G+T V+ YE G+ L+ I+ LE + Sbjct: 11 DMADGSRIRELRTRRGLLQRELAEMAGVTESAVRNYELGLRTPRPQHLKAIARALEVDPA 70 Query: 72 FFFDVSPTVCSDISS 86 D D Sbjct: 71 SLVDYGVDTARDALE 85 >gi|56695923|ref|YP_166274.1| transcriptional regulator, putative [Ruegeria pomeroyi DSS-3] gi|56677660|gb|AAV94326.1| transcriptional regulator, putative [Ruegeria pomeroyi DSS-3] Length = 432 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 51/134 (38%), Gaps = 13/134 (9%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR+++G+ Q L + I+ + E R+G L I+ L S Sbjct: 4 DTLTGSRIRERRLMIGLRQADLAREVDISASYLNLIEHNRRRIGGKLLVDIAAALSVEPS 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-----QKIIELVRSI 126 + + E ++P G + +ID+ R + + L R + Sbjct: 64 MLTEGAEAALLATLREAAAD----ASPTGAE----ADRIDEFAGRFPGWAELLARLFRRV 115 Query: 127 VSSEKKYRTIEEEC 140 S E+ T+ + Sbjct: 116 GSLERTVETLSDRL 129 >gi|23578000|ref|NP_702947.1| putative transcription regulatory protein [Corynebacterium efficiens YS-314] gi|259506151|ref|ZP_05749053.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|23494826|dbj|BAC19789.1| putative transcription regulatory protein [Corynebacterium efficiens YS-314] gi|259166272|gb|EEW50826.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 81 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +KK + I +G R+R R +SQE++ G+ + E+G + L Sbjct: 1 MTPDKK----ILIQLGDRLREARKQAKLSQEEVAHLSGLHRTYISLVERGGRNISVLNLL 56 Query: 61 HISEVLESPISFFFDV 76 I+ VL + Sbjct: 57 SITGVLGVDVGDIVSG 72 >gi|85709529|ref|ZP_01040594.1| hypothetical protein NAP1_11628 [Erythrobacter sp. NAP1] gi|85688239|gb|EAQ28243.1| hypothetical protein NAP1_11628 [Erythrobacter sp. NAP1] Length = 238 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 7/96 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR+ R G++ ++ + LG++ V +EK R R+ I++VL Sbjct: 143 LGKRLNTLRRERGLTLAQVADALGVSKPTVWAWEKDKARPLPERIGAIADVLGVTSEDLM 202 Query: 75 DVSPTVCSDISSEE-------NNVMDFISTPDGLQL 103 +V+ + EE D S ++L Sbjct: 203 EVAGRTPAGALIEECRQKIAAQFGADPSSVRISIEL 238 >gi|22537417|ref|NP_688268.1| repressor protein [Streptococcus agalactiae 2603V/R] gi|77406937|ref|ZP_00783958.1| repressor protein, putative [Streptococcus agalactiae H36B] gi|22534293|gb|AAN00141.1|AE014250_4 repressor protein, putative [Streptococcus agalactiae 2603V/R] gi|77174457|gb|EAO77305.1| repressor protein, putative [Streptococcus agalactiae H36B] Length = 230 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 32/58 (55%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 GKR++ RR+ LG SQ +L + L I +E + S L+ ++ +L+ P ++F Sbjct: 4 GKRLKKRRITLGYSQSELADKLHINRSSYFNWENEKTKPNQSNLKQLAILLDVPETYF 61 >gi|291287634|ref|YP_003504450.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884794|gb|ADD68494.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 191 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 4/99 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R++ R L MSQ G +G + V ++E G ++ + HI E + + Sbjct: 4 KKIADRLKELRKALDMSQTDFGRKIGKNYHSVMRWELGRVLPPSNVIVHICESFDVSPDW 63 Query: 73 FFDVSP----TVCSDISSEENNVMDFISTPDGLQLNRYF 107 I+ E DF LQ + F Sbjct: 64 LKSGKGKMFLNSDPYIAEAETAPYDFQQEKISLQPDSIF 102 >gi|219848414|ref|YP_002462847.1| XRE family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542673|gb|ACL24411.1| transcriptional regulator, XRE family [Chloroflexus aggregans DSM 9485] Length = 211 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VGKR+R R MS L E G+ + E G S LQ ++ L+ PIS Sbjct: 20 VDVGKRLRTLRERQRMSIRALAEASGLAVNTLSLIENGRTSPSVSTLQRLAVALQVPISA 79 Query: 73 FFDVS 77 FF Sbjct: 80 FFTPE 84 >gi|170742021|ref|YP_001770676.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168196295|gb|ACA18242.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 183 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R + G+SQ L GI + E G L+ I + + ++ F Sbjct: 5 EVGARLRYVRTLHGLSQRALARKAGIVNSTISLIESGQTNPSVGALKRILDAVPIGLAEF 64 Query: 74 FDVSPTVCSDI 84 F + P Sbjct: 65 FSLEPARTEKA 75 >gi|114763961|ref|ZP_01443202.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114543553|gb|EAU46567.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 131 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 3/119 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R GM QEKL LG+ + + +E + A++LQ ++ +L I + Sbjct: 16 GDRIAAAREAAGMGQEKLARRLGVKLKTLHGWENDLAEPRANKLQMLAGLLNVSIVWLLT 75 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 S EE D L R ++ L +++ K+ Sbjct: 76 GEGEGISG--PEETEAALPADVNDALLEIRALKTQMQTAG-DRLGRLEKTLRQLLKEDA 131 >gi|95929663|ref|ZP_01312405.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] gi|95134360|gb|EAT16017.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] Length = 176 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R G++ + + G + + + E + L +SE + I +FF Sbjct: 5 IGTKIRELRKNRGITLQYVANQTGFSAALISQIENNNITPPIATLARLSEFFDVKIGYFF 64 Query: 75 DVS 77 + Sbjct: 65 EDE 67 >gi|16802775|ref|NP_464260.1| hypothetical protein lmo0733 [Listeria monocytogenes EGD-e] gi|47095298|ref|ZP_00232909.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|224499603|ref|ZP_03667952.1| hypothetical protein LmonF1_07864 [Listeria monocytogenes Finland 1988] gi|224501962|ref|ZP_03670269.1| hypothetical protein LmonFR_05517 [Listeria monocytogenes FSL R2-561] gi|254828817|ref|ZP_05233504.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|254830277|ref|ZP_05234932.1| hypothetical protein Lmon1_02912 [Listeria monocytogenes 10403S] gi|254900031|ref|ZP_05259955.1| hypothetical protein LmonJ_09460 [Listeria monocytogenes J0161] gi|254911416|ref|ZP_05261428.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935743|ref|ZP_05267440.1| DNA-binding protein [Listeria monocytogenes F6900] gi|255028966|ref|ZP_05300917.1| hypothetical protein LmonL_06926 [Listeria monocytogenes LO28] gi|284801064|ref|YP_003412929.1| hypothetical protein LM5578_0813 [Listeria monocytogenes 08-5578] gi|284994206|ref|YP_003415974.1| hypothetical protein LM5923_0768 [Listeria monocytogenes 08-5923] gi|16410122|emb|CAC98811.1| lmo0733 [Listeria monocytogenes EGD-e] gi|47016369|gb|EAL07291.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|258601229|gb|EEW14554.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|258608327|gb|EEW20935.1| DNA-binding protein [Listeria monocytogenes F6900] gi|284056626|gb|ADB67567.1| hypothetical protein LM5578_0813 [Listeria monocytogenes 08-5578] gi|284059673|gb|ADB70612.1| hypothetical protein LM5923_0768 [Listeria monocytogenes 08-5923] gi|293589357|gb|EFF97691.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 169 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLLGE 63 >gi|312126655|ref|YP_003991529.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776674|gb|ADQ06160.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 77 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VGK++R R+ +SQ++L + G+ + E ++ ++ L I F Sbjct: 1 MVGKKLRELRIQKRLSQQQLAKIAGVPQSTIWYIESENRNPTIKTMKRLATALGVSIEEF 60 Query: 74 FDVSPTVCSDISSEENN 90 D S++N+ Sbjct: 61 LDSETKEMITNGSQKND 77 >gi|225026540|ref|ZP_03715732.1| hypothetical protein EUBHAL_00789 [Eubacterium hallii DSM 3353] gi|224956154|gb|EEG37363.1| hypothetical protein EUBHAL_00789 [Eubacterium hallii DSM 3353] Length = 177 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 38/80 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VGK+IR R G SQ +L E GI ++KYE G+ +L+ I+ L +S F Sbjct: 1 MVGKKIRAYREFRGFSQIQLAELSGINVGTIRKYELGIRNPKPEQLEKIAAALGLNVSIF 60 Query: 74 FDVSPTVCSDISSEENNVMD 93 D + D+ S + D Sbjct: 61 LDFNIETVGDVLSLLFAIDD 80 >gi|187919965|ref|YP_001888996.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187718403|gb|ACD19626.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 190 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 33/89 (37%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +D + +R+R R S ++L + G++ + + E A+ L + Sbjct: 9 NAIDRRIAQRLRALRAERNWSLDELAKLSGVSRATLSRLENAAVSPTANVLGKLCVAYGL 68 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFIST 97 P+S + + + + ++ Sbjct: 69 PMSRLMHMVEEDFAPLVPRAAQPLWTDAS 97 >gi|228984217|ref|ZP_04144399.1| hypothetical protein bthur0001_9250 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775504|gb|EEM23888.1| hypothetical protein bthur0001_9250 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 124 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLSEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|255025462|ref|ZP_05297448.1| transcriptional repressor, putative [Listeria monocytogenes FSL J2-003] Length = 68 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K IR R M+Q+++ + L ++ +YE G AS L I++ + I + Sbjct: 1 MIHKNIRSIREDNDMTQQQMADLLNVSQNTYSQYETGKIEWTASTLIKIADYFDVSIDYL 60 Query: 74 FDVSPTVC 81 D + T Sbjct: 61 LDRTKTTE 68 >gi|164688807|ref|ZP_02212835.1| hypothetical protein CLOBAR_02454 [Clostridium bartlettii DSM 16795] gi|164602283|gb|EDQ95748.1| hypothetical protein CLOBAR_02454 [Clostridium bartlettii DSM 16795] Length = 364 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 11/112 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+GK I R G++Q++L +G++ V K+E + L ++ + + Sbjct: 4 INIGKNITKFRRSKGITQDELASYIGVSKSSVSKWENSITYPDIMLLPQLATLFNISLDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P + + +L + F Q D +V +K E ++ Sbjct: 64 LMGYEPQLIKEDI-----------QKIYFELAQEFAQNDSNEVLKKCEEYIK 104 >gi|118464968|ref|YP_879634.1| XRE family transcriptional regulator [Mycobacterium avium 104] gi|118166255|gb|ABK67152.1| transcriptional regulator, XRE family protein [Mycobacterium avium 104] Length = 474 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 6/121 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L LG++ V + E + L ++E + P +F Sbjct: 7 GARLRRLREEQGLTQVALARVLGLSTSYVNQLENDQRPITVPVLLTLTERFDLPTQYFAP 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S E + +L I Q ++ L R + + Sbjct: 67 DSDARLIADLREVLA-ETPATPGQVEELVARMPAIG-----QTLVNLHRRLHDTTADLEA 120 Query: 136 I 136 + Sbjct: 121 L 121 >gi|21218451|ref|NP_632000.1| hypothetical protein pLP9000_09 [Lactobacillus plantarum] gi|20853812|gb|AAM26929.1| unknown [Lactobacillus plantarum] Length = 112 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 5/104 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R +Q+ L E L ++ Q + K+E G RL IS + + + Sbjct: 1 MTLGQRIKEEREKRQWTQDYLAETLNVSRQAISKWEVGSAYPDIDRLVQISNLFDITLDS 60 Query: 73 FFDVSPTVCSDI-----SSEENNVMDFISTPDGLQLNRYFIQID 111 ++ I + + N+ +F+ + + + I Sbjct: 61 LIKGDDSLKKSIVITKNAKAQTNIWEFMRSTGWMMVIAIIYLIT 104 >gi|47091696|ref|ZP_00229492.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|254853835|ref|ZP_05243183.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|254933600|ref|ZP_05266959.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|255521409|ref|ZP_05388646.1| hypothetical protein LmonocFSL_09325 [Listeria monocytogenes FSL J1-175] gi|300765051|ref|ZP_07075038.1| hypothetical protein LMHG_11766 [Listeria monocytogenes FSL N1-017] gi|47020015|gb|EAL10752.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|258607218|gb|EEW19826.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|293585163|gb|EFF97195.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|300514176|gb|EFK41236.1| hypothetical protein LMHG_11766 [Listeria monocytogenes FSL N1-017] gi|328467297|gb|EGF38377.1| hypothetical protein LM1816_00625 [Listeria monocytogenes 1816] gi|328475606|gb|EGF46359.1| hypothetical protein LM220_07617 [Listeria monocytogenes 220] gi|332311156|gb|EGJ24251.1| DNA-binding protein [Listeria monocytogenes str. Scott A] Length = 169 Score = 51.0 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLLGE 63 >gi|326386490|ref|ZP_08208113.1| putative transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326209151|gb|EGD59945.1| putative transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 204 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 33/79 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V +G++IR R G++ L E G++ V + E+G++ L ++ L Sbjct: 19 AVGARLGQQIRALRRDRGLTLAHLAETTGLSLGLVSQIERGLSEPSVKALHLLASALGVT 78 Query: 70 ISFFFDVSPTVCSDISSEE 88 + +FF + + Sbjct: 79 VGWFFRDDGEREDTLPESD 97 >gi|293400331|ref|ZP_06644477.1| helix-turn-helix protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306731|gb|EFE47974.1| helix-turn-helix protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 353 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 11/95 (11%), Positives = 34/95 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R+ ++QE+L + ++ + K+E ++ + L ++ + Sbjct: 5 LGNKIRELRLHKQLTQEQLAQLCKVSSAAISKWEHDLSYPDITLLPILARIFHVSTDELL 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + E + + + + Sbjct: 65 NFESEPSEEEIVEMAKKALEMYQSVPFEEAFAYTK 99 >gi|291299515|ref|YP_003510793.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568735|gb|ADD41700.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 388 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 13/117 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ RR G SQEKL E LG+ V ++E +++ L + Sbjct: 6 SRLAQRRKAAGFSQEKLAERLGVERSTVVRWETAETEPQPWLRLKLAQALGITTDDLHVL 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 V + + + + P + L + L + ++ Y Sbjct: 66 LDDVEYVTAGPSDRMDYVLEHPASVDLV-------------AVAYLHERVRQLDESY 109 >gi|229196060|ref|ZP_04322812.1| hypothetical protein bcere0001_16220 [Bacillus cereus m1293] gi|228587442|gb|EEK45508.1| hypothetical protein bcere0001_16220 [Bacillus cereus m1293] Length = 153 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 32/65 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 8 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 67 Query: 73 FFDVS 77 + Sbjct: 68 LIKGN 72 >gi|227873856|ref|ZP_03992078.1| helix-turn-helix motif protein [Oribacterium sinus F0268] gi|227840282|gb|EEJ50690.1| helix-turn-helix motif protein [Oribacterium sinus F0268] Length = 331 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 1/96 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE L E L ++ Q + K+E + +++ +SEV + Sbjct: 1 MILADKIIELRKKNGWSQEDLAEKLDVSRQSISKWEGAQSIPDMNKILKLSEVFSVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST-PDGLQLNRYF 107 + S + + + + ++ F Sbjct: 61 LLKDEIELDSPGEAPKVDTESSLKEVSVSMEEANAF 96 >gi|71904207|ref|YP_281010.1| transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|71803302|gb|AAX72655.1| transcriptional regulator [Streptococcus pyogenes MGAS6180] Length = 128 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 35/94 (37%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + +G++I R +SQEKL E + ++ Q + +E L +S++ + + Sbjct: 2 IFMEIGQQIIRYRKQQALSQEKLAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSL 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + T + L Sbjct: 62 DQLIKGDIEKMKYTITQVDKKNFKRDTKVMVTLM 95 >gi|322375624|ref|ZP_08050136.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] gi|321279332|gb|EFX56373.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] Length = 152 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 32/63 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R ++Q+++ E +G+T + QK+E G +++ +++ P+S+ + Sbjct: 2 NRIKELRKQKKVTQQEVAEAIGVTRRGFQKWENGESQITLKNAAQLADYFGVPLSYLLNQ 61 Query: 77 SPT 79 Sbjct: 62 EEE 64 >gi|310830109|ref|YP_003962466.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308741843|gb|ADO39503.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 111 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 37/105 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R+R R ++Q +L + GIT + E+G +++ VL Sbjct: 4 KYLGQRLRQFRKDAHLTQNQLAKKAGITPTYLSIIERGAQLPRLETFINLANVLSVSADD 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 T V T + L L + I++ ++ Sbjct: 64 LLMEDQTESRKNLYPSFCVPSDNLTDEQLVLVQEMIKLMCDHFKK 108 >gi|296452101|ref|ZP_06893812.1| transcriptional regulator [Clostridium difficile NAP08] gi|296877457|ref|ZP_06901490.1| transcriptional regulator [Clostridium difficile NAP07] gi|296259051|gb|EFH05935.1| transcriptional regulator [Clostridium difficile NAP08] gi|296431469|gb|EFH17283.1| transcriptional regulator [Clostridium difficile NAP07] Length = 144 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 29/69 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + ++ R I +QE+L E L ++ Q + K+E G + ++++ + Sbjct: 4 MINENLKSLRKIHQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDL 63 Query: 74 FDVSPTVCS 82 + S Sbjct: 64 VNHSEEKTG 72 >gi|296131950|ref|YP_003639197.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296030528|gb|ADG81296.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 129 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 2/122 (1%) Query: 6 KIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K + +D +G+RIR R L +S+EK E +G++ V + E+G ++ L I+ Sbjct: 2 KKKSEIDNKAIGQRIREEREKLELSREKFAEIIGLSDYYVGQLERGERQMSLRVLFKIAR 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L + + + + N + ++N + ++ + + +L++ Sbjct: 62 CLHVSLDYLIFGKTVHDTYQVQDARNTYKAVEDNKYKEINILLDKCSPEEL-ELVKKLIK 120 Query: 125 SI 126 +I Sbjct: 121 TI 122 >gi|260662345|ref|ZP_05863240.1| predicted protein [Lactobacillus fermentum 28-3-CHN] gi|260553036|gb|EEX25979.1| predicted protein [Lactobacillus fermentum 28-3-CHN] Length = 188 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 12/121 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R G +Q++ E L Q V K E+GV L +I + + Sbjct: 30 IGQNIRRLRKDNGYTQKQFAEKLETIEQTVSKIERGVFSPSTDSLMNICTIFGVTPNDLM 89 Query: 75 DVSPTVCSDISSEENNVMDFIS--TPDGLQLNRYFIQI----------DDVKVRQKIIEL 122 + + + + + D + T ++ + F Q D+ + Q+II+L Sbjct: 90 LDTNKLQAVNAQVIDQQADSFAALTKHMTEIQQLFAQADRARDAGDDGDERAIIQRIIDL 149 Query: 123 V 123 Sbjct: 150 Y 150 >gi|258647029|ref|ZP_05734498.1| DNA-binding protein [Dialister invisus DSM 15470] gi|260404470|gb|EEW98017.1| DNA-binding protein [Dialister invisus DSM 15470] Length = 249 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 2/92 (2%) Query: 5 KKIPNPVDI--NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K+ +D+ +GKRIR R MS +L + + + + KYE G + + L I Sbjct: 9 NKMEQKMDLPQILGKRIRYYRKQKHMSLRQLADIICKSVSTLSKYESGQIVLDITTLYDI 68 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDF 94 + P+ S + F Sbjct: 69 AHAFHLPVEQLLYHEEIFMSPTEKDSYIPAFF 100 >gi|269797322|ref|YP_003311222.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269093951|gb|ACZ23942.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 290 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 52/148 (35%), Gaps = 20/148 (13%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++R R G+SQ KL E L ++ Q + K+E G S L+ +S V + Sbjct: 5 EKLREYRKQSGLSQGKLAETLNVSRQAITKWESGNGMPDISNLKALSGVFNVSVDELLSE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQL---NRYFIQIDDVKVRQ---------------- 117 ++L NR ++ + + + Sbjct: 65 EAVKPRYPYESIVEYDIDEIKHFDIKLGSVNRVKMRAGEGEKIKVQLVSDTIENLTELVK 124 Query: 118 -KIIELVRSIVSSEKKYRTIEEECMVEQ 144 KI ++ R I + +++ EE + E Sbjct: 125 VKIDDIKRRIDVDVNRSKSLSEELVKEH 152 >gi|148547002|ref|YP_001267104.1| helix-turn-helix domain-containing protein [Pseudomonas putida F1] gi|148511060|gb|ABQ77920.1| helix-turn-helix domain protein [Pseudomonas putida F1] Length = 129 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 12/117 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R LGM+Q G+ G+ KYE G L ++ + Sbjct: 4 IGPRLREERERLGMTQRVFGDIGGVEPNAQGKYESGERTPRLDYLAALAT-RGVDALYVL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 T + N L F ++ + ++ L+ + + K Sbjct: 63 SGLRTPAAHEGLNTNESG----------LLGAFRKLRSDD-QAALLHLLGRLANDAK 108 >gi|325568103|ref|ZP_08144544.1| hypothetical protein HMPREF9087_0833 [Enterococcus casseliflavus ATCC 12755] gi|325158304|gb|EGC70455.1| hypothetical protein HMPREF9087_0833 [Enterococcus casseliflavus ATCC 12755] Length = 206 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 KK+ G++I+ R ++QE+ L +T Q V +E N L I Sbjct: 46 KEKKM------EFGEKIKEVRTRNNLTQEQFATQLHVTRQAVSNWENNRNLPDLEMLIAI 99 Query: 63 SEVLESPISFF 73 + + + + Sbjct: 100 ATIFQLSLDEL 110 >gi|309776485|ref|ZP_07671468.1| helix-turn-helix domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308915752|gb|EFP61509.1| helix-turn-helix domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 303 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++++ R G+SQE+L L ++ Q V K+E ++ I + + + Sbjct: 1 MKFGEKLQKLRKESGISQEELASRLHVSRQAVSKWENDQGYPETEKMLMIGNIFSVSMDY 60 Query: 73 FFDVSPTVCSDISS 86 Sbjct: 61 LLKDEGGESLPQEP 74 >gi|325677709|ref|ZP_08157361.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110677|gb|EGC04841.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 369 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 18/141 (12%), Positives = 49/141 (34%), Gaps = 12/141 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I+ R ++QE+L + LGIT + V ++E S+L ++ + Sbjct: 1 MTIGATIKQLRQEQDITQEQLADALGITSRAVSQWETDRTAPDISQLPALANFFDVTTDH 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ---IDDVKVRQKIIELVRSI--- 126 V + + ++ + + +++ + L ++ Sbjct: 61 LLGVDIARKEEEIGKILKRVNGFQEQGDHEASAKYLREQLKTYPNEPDLLTNLASALQTF 120 Query: 127 ------VSSEKKYRTIEEECM 141 +E+ + +E + Sbjct: 121 YFHQGKADTEELKKEKSDEII 141 >gi|268592297|ref|ZP_06126518.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291312078|gb|EFE52531.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 73 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +GK+I R G+S +L E +GI+ QQ +YE+GVNR+ RL + Sbjct: 1 MPYSTSHLIGKKILYYRKTNGLSVNELSEVIGISPQQQSRYERGVNRITLDRLFQYATYF 60 Query: 67 ESPISFFFDVSP 78 E I FF Sbjct: 61 EIDIKTFFQSHD 72 >gi|167758542|ref|ZP_02430669.1| hypothetical protein CLOSCI_00882 [Clostridium scindens ATCC 35704] gi|167663738|gb|EDS07868.1| hypothetical protein CLOSCI_00882 [Clostridium scindens ATCC 35704] Length = 94 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 39/96 (40%), Gaps = 5/96 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I+ R M+Q L + L IT V +E G++ + L +S++ + Sbjct: 1 MMIADKIKQLRTSRDMTQSDLAKKLNITRSSVNAWEMGLSTPSTAYLVELSQLFHVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 +S DIS+ + + L +YF Sbjct: 61 LLGLSGNATLDISNLSEKEVQIV-----YDLVQYFR 91 >gi|126735190|ref|ZP_01750936.1| DNA-binding protein, putative [Roseobacter sp. CCS2] gi|126715745|gb|EBA12610.1| DNA-binding protein, putative [Roseobacter sp. CCS2] Length = 128 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 11/124 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G+ Q+ L E LG+ +Q +E+ + A+RLQ +S ++ +S+ Sbjct: 16 GDRLAGAREAAGLDQKGLAEKLGVKPAVIQAWEEDLKEPRANRLQMVSGIVGVSMSWLLT 75 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + D + L + R +I + + EK+ RT Sbjct: 76 GEGDGPEAPDDDGPMSNDLV------DLLAEMRAL-----RGQIAQSGEKLGRLEKRLRT 124 Query: 136 IEEE 139 ++ Sbjct: 125 ALKD 128 >gi|326803119|ref|YP_004320937.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326650926|gb|AEA01109.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 115 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 34/88 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R MSQ +L E + ++ V ++E G + +L ++ I + Sbjct: 5 GIRLAQLRNEKKMSQRELAEKMDVSQSYVGQWESGKRVIPTEKLLDLANFFNVSIDYLLG 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQL 103 + ++ + + T G ++ Sbjct: 65 YTNNKTPRSKDLKDLLKEESMTYGGREI 92 >gi|325568823|ref|ZP_08145116.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157861|gb|EGC70017.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 182 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 37/79 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+++R R+ ++QE+LGE +T + + E+ ++ I EVL Sbjct: 1 MNMEIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTP 60 Query: 71 SFFFDVSPTVCSDISSEEN 89 FF + EE+ Sbjct: 61 EEFFREENAQHQVVYREED 79 >gi|300917853|ref|ZP_07134492.1| helix-turn-helix protein [Escherichia coli MS 115-1] gi|300414950|gb|EFJ98260.1| helix-turn-helix protein [Escherichia coli MS 115-1] Length = 185 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 1/121 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ G+SQE + G + + E+G + ++ ++ L Sbjct: 32 MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANAL 91 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI-QIDDVKVRQKIIELVRS 125 P+ +D D GL R + D +++ + Sbjct: 92 SVEPWQLLAPGPSEDNDSELLVPYAADGSCFHPGLASTRDGSFGVGDKAAQKRFGTFAEA 151 Query: 126 I 126 + Sbjct: 152 L 152 >gi|255102244|ref|ZP_05331221.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] Length = 141 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 29/69 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + ++ R I +QE+L E L ++ Q + K+E G + ++++ + Sbjct: 1 MINENLKSLRKINQYTQEELAEKLNVSRQSIAKWESGESIPDIGSCIKLAKLYNVKLDDL 60 Query: 74 FDVSPTVCS 82 + S Sbjct: 61 VNHSEEKTG 69 >gi|150018645|ref|YP_001310899.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905110|gb|ABR35943.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 371 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 56/137 (40%), Gaps = 9/137 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I +R G++QE+L + +G++ V K+E G++ L ++ + Sbjct: 6 IGECIAYKRKEKGVTQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNISVDELL 65 Query: 75 DVSPTVC--------SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRS 125 SP + +++S E T +L + + + +++ Sbjct: 66 GYSPQLKKEDIKKIYNELSHEFAIKPFDEVTNRCEKLIKKYYSCFPFLLSMDQLLINYSI 125 Query: 126 IVSSEKKYRTIEEECMV 142 + +E R I ++C++ Sbjct: 126 LAKTEDIKREIFQKCIL 142 >gi|172057739|ref|YP_001814199.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990260|gb|ACB61182.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 294 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 2/116 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++++G I+ R +Q +L + + + ++ K E G N LQ I+E Sbjct: 2 NQLNVSIGNEIKRIRQERNWTQSELCQGI-CSQAEISKIENGRNSPTVDLLQQIAERFHV 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+S FF ++ ++ + ++ ++ + Q + ++II L+R Sbjct: 61 PVSSFF-INEEKKTNFRMRDQEIIHLTRLNQYAEIFKRIDQYLAEETDKEIIILLR 115 >gi|319946274|ref|ZP_08020514.1| transcriptional regulator PlcR [Streptococcus australis ATCC 700641] gi|319747656|gb|EFV99909.1| transcriptional regulator PlcR [Streptococcus australis ATCC 700641] Length = 288 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 1/100 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ RR L MSQ++L E + Q+ + E G GA L +S L+ + +FF+ Sbjct: 8 RLKNRRKELKMSQKELAEGI-CKQGQISRLESGEYTPGADFLYALSRKLKVSMDYFFEEH 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 D +E + + +Y ++++++K + Sbjct: 67 VEQKIDELTEFKKIARIFIMNRNYESLKYILELENIKTHR 106 >gi|291539377|emb|CBL12488.1| Predicted N-acetylglucosamine kinase [Roseburia intestinalis XB6B4] Length = 393 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G++Q + E LGI+ Q V K+E G + L ISE+L+ I Sbjct: 20 ENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQSCPSIENLCVISEILDVSIDTLIGE 79 Query: 77 SPTVCS 82 + Sbjct: 80 NSDSEK 85 >gi|160934669|ref|ZP_02082055.1| hypothetical protein CLOLEP_03542 [Clostridium leptum DSM 753] gi|156866122|gb|EDO59494.1| hypothetical protein CLOLEP_03542 [Clostridium leptum DSM 753] Length = 99 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +IR R G +Q+K+ E LG+ YE G L+ ++ V + D+S Sbjct: 13 KIRQLREKYGYTQKKMSELLGVERSTYTYYETGKTEPSLRVLRKMAVVFHVSTDYLVDMS 72 Query: 78 PTVCS 82 T S Sbjct: 73 DTGNS 77 >gi|146280227|ref|YP_001170384.1| hypothetical protein Rsph17025_4229 [Rhodobacter sphaeroides ATCC 17025] gi|145558468|gb|ABP73079.1| hypothetical protein Rsph17025_4229 [Rhodobacter sphaeroides ATCC 17025] Length = 652 Score = 50.6 bits (119), Expect = 6e-05, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 4/79 (5%) Query: 7 IPNPVDI----NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +P+ V++ +G I R G++ + L E ++ + E+G G L + Sbjct: 1 MPHSVEVDRAARIGANIARARQRRGLTLDGLAELSCVSRATISALERGHGNPGVQTLWSL 60 Query: 63 SEVLESPISFFFDVSPTVC 81 ++ L + P Sbjct: 61 ADALGLNFAALLGDEPASA 79 >gi|218670812|ref|ZP_03520483.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 96 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 34/84 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+ + E + L+ I + + + Sbjct: 1 MSVDIGSRLRHLRIAHKLSQRELAKRTGVPNSTISLIESNASNPSVGALKRILDGIPIGL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF P +++ Sbjct: 61 AEFFAFEPERPKKAFYAAEELVEI 84 >gi|302672228|ref|YP_003832188.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396701|gb|ADL35606.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 277 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK I R G++Q ++ E L IT + + K+E G N +S + + +L ++ Sbjct: 7 GKFIAGLRKEKGLTQAQIAEMLNITDRAISKWETGKNMPDSSIMLELCGILGITVNELLS 66 Query: 76 VSPTVCSDISSEENNV 91 D ++ N Sbjct: 67 GERIEMKDFENKANEN 82 >gi|256789205|ref|ZP_05527636.1| regulatory protein [Streptomyces lividans TK24] gi|289773098|ref|ZP_06532476.1| regulatory protein [Streptomyces lividans TK24] gi|289703297|gb|EFD70726.1| regulatory protein [Streptomyces lividans TK24] Length = 191 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 7/115 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+ V VG R+R R ++ L E GI+ + + E G+ R L I+ Sbjct: 3 TPDDVLAGVGPRLRQVRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIARAH 62 Query: 67 ESPISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + P+ P V + ++ G + F + + + R+ Sbjct: 63 QVPLDELVGAPPVGDPRVRARPVVRHGRTHWPLTRQAGG--LQAFKVL-EPQRRE 114 >gi|237733689|ref|ZP_04564170.1| phosphoribosylformylglycinamidine cyclo-ligase [Mollicutes bacterium D7] gi|229383287|gb|EEO33378.1| phosphoribosylformylglycinamidine cyclo-ligase [Coprobacillus sp. D7] Length = 415 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I L+R G++Q++L L ++FQ V K+E G L ++ +LE + Sbjct: 7 VGEFITLKRKEKGLTQQQLANKLSVSFQAVSKWENGGL-PNVEILSDLAALLEITVDELL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +S +D + + + +++ D +V + Sbjct: 66 AGVEKELEGLSYS-KAGVDIAYSDAIKREMKQYLKTSDPRVLNGL 109 >gi|330821963|ref|YP_004350825.1| DNA-binding protein [Burkholderia gladioli BSR3] gi|327373958|gb|AEA65313.1| DNA-binding protein [Burkholderia gladioli BSR3] Length = 193 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 51/133 (38%), Gaps = 7/133 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 N + N + +G +IR R L + ++ GI+ + + E+G+ + L Sbjct: 5 TENTQAQNA-AVELGGKIRALRQRLKRTLDETAGAAGISKPFLSQVERGLASPSITSLAG 63 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L + +F + S ++ F + F ++ +V +++ Sbjct: 64 IAHALGVNVQYFVETPSEERSVCRGDQLRFFSFADS------ANLFARLTNVSAGRQLEA 117 Query: 122 LVRSIVSSEKKYR 134 ++ + +K+ Sbjct: 118 ILVRMPPGQKRSE 130 >gi|284008336|emb|CBA74713.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 131 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 51/132 (38%), Gaps = 6/132 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG RIR R GM+ +L + + + E+ + L I+ L ++ Sbjct: 1 MNVGTRIRELRKKKGMTILQLATAINSDVGNISRLERNKQGYSENTLLKIASALGVQVAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F S + + + + S ++L + + + + ++ ++ + + Sbjct: 61 LFLDSSETNNASRNNKQKYSNLKSDQ--IELLELYDSLPEEEAKR----FIKEMRDRKTH 114 Query: 133 YRTIEEECMVEQ 144 Y I E + ++ Sbjct: 115 YELIFNEMLKKR 126 >gi|256111164|ref|ZP_05452200.1| hypothetical protein Bmelb3E_01001 [Brucella melitensis bv. 3 str. Ether] gi|265992675|ref|ZP_06105232.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|262763545|gb|EEZ09577.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] Length = 182 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 38/84 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + + + Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGM 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF + P + E +++ Sbjct: 61 AEFFALEPDAPHRVFYEAEELVEI 84 >gi|207721990|ref|YP_002252428.1| hypothetical protein RSMK02307 [Ralstonia solanacearum MolK2] gi|206587163|emb|CAQ17747.1| hypothetical protein RSMK02307 [Ralstonia solanacearum MolK2] Length = 209 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 5/103 (4%) Query: 1 MVGNKKIPNP-----VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 M P+ V+ + +R+R R G + + L G++ + E+G Sbjct: 1 MQETTAPPSDDTDAGVNERIARRVRELRAARGYTLDALAARCGVSRSMISLIERGAASPT 60 Query: 56 ASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 A+ L ++ L ++ F P Sbjct: 61 AAVLDKLAAGLGISLASLFGGEREGMPAQPLMRRAQQTQWRDP 103 >gi|194289030|ref|YP_002004937.1| transcriptional regulator lambda-like DNA-binding repressor [Cupriavidus taiwanensis LMG 19424] gi|193222865|emb|CAQ68868.1| putative TRANSCRIPTIONAL REGULATOR, lambda-like DNA-BINDING REPRESSOR [Cupriavidus taiwanensis LMG 19424] Length = 155 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 15/116 (12%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + +G R++ R LG SQ G + +EKG A HI+ + + Sbjct: 9 IRVGIGARLKEERERLGYSQPAFAALGGASKGSQLAWEKGSAMPNA-EFLHIAASVGVDV 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + S + E + ++ D + R ++ L+ + Sbjct: 68 LYVVTGRRNMSSLAAEE--------------EAVIAGYRMLDARGRTGVLALISGM 109 >gi|168206998|ref|ZP_02633003.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|170661596|gb|EDT14279.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 340 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 5/121 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R ++Q+ L + L ++ + YEKG L +++ + I F Sbjct: 8 NNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVEPSIFFLINLANEMNCSIDNLFGF 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + V D+ P + + ++IDD K + +L +++ ++ Y + Sbjct: 68 NREVTIDLPQNLTKED---LKPLEKEFKKENLEIDDPKYY--LDKLKKTLTKVQRSYIEL 122 Query: 137 E 137 E Sbjct: 123 E 123 >gi|1174332|emb|CAA64677.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens] Length = 182 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 35/84 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L G+T + E + L+ I + + + Sbjct: 1 MSVDIGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILDGIPIGL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF P + +++ Sbjct: 61 AEFFAFEPETSRKAFYRADELVEI 84 >gi|83589152|ref|YP_429161.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572066|gb|ABC18618.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 101 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 35/101 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R ++Q +L + G++ + + E G L I + ++ Sbjct: 1 MTLGNRLKELREKHHLTQYRLAKLSGVSQSHISEIESGDKEPTTGTLMKICSAMGLTLAE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 FF + + ++ +L + I Sbjct: 61 FFTEETPSLPPDLRQILKEAESLTPGQRQKLIEFLKSIKSN 101 >gi|313124417|ref|YP_004034676.1| hypothetical protein LDBND_1675 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280980|gb|ADQ61699.1| Hypothetical protein LDBND_1675 [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 143 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 2/99 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ + ++R R G+SQ++L E L T +V +E G + S + ++ + + Sbjct: 5 NMMLPSKLRDLRKKHGLSQKELAEKLMTTQAKVASWENGDSVPDISYIAKLTVLYDVSAD 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + + E MD +T ++N + I Sbjct: 65 YLL--KDGKQEGQAIEPGEEMDRPNTKRLGRINSIYWTI 101 >gi|260460388|ref|ZP_05808640.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259034033|gb|EEW35292.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 202 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 41/86 (47%), Gaps = 2/86 (2%) Query: 1 MVGN--KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M+ + +K + D+ VG+R+R R+ G+S +L G++ + + E+G++ + Sbjct: 3 MLDDAAEKPKDDADVRVGRRVRALRLERGLSLAELAAKAGVSIGALSQIERGMSSLRVKV 62 Query: 59 LQHISEVLESPISFFFDVSPTVCSDI 84 + ++ L+ S +D+ Sbjct: 63 IWPLAAALDIEPSALIADGNDAVNDL 88 >gi|218282117|ref|ZP_03488416.1| hypothetical protein EUBIFOR_00991 [Eubacterium biforme DSM 3989] gi|218216910|gb|EEC90448.1| hypothetical protein EUBIFOR_00991 [Eubacterium biforme DSM 3989] Length = 334 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 36/95 (37%), Gaps = 3/95 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G +QE L + LG++ Q V K+E ++ ++++ E + Sbjct: 16 MILADKIIEERKKNGWTQEDLAQKLGVSRQSVSKWESAGAIPDLKKIIQLADLFEVSTDY 75 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + ++ + D ++ + Sbjct: 76 LLKDEIEKEN---TDISCDTDCELHRVTMEEANAY 107 >gi|261409127|ref|YP_003245368.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329923481|ref|ZP_08278961.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|261285590|gb|ACX67561.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] gi|328941241|gb|EGG37537.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 122 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 6/114 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI R G +QE+L +GIT + YEK + L ++++ + I + Sbjct: 4 GERIAELREQRGWTQEELATSVGITRAALSHYEKNRRKPDFETLTRLADLFDVSIDYLIG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFI-----QIDDVKVRQKIIELVR 124 + S + E + +D + D L F + + ++ I VR Sbjct: 64 RTTLEKSVLDPEVRSFVDGLELSDQ-DLLERFNLTVDGRKLTEEEAKRFIAFVR 116 >gi|169335627|ref|ZP_02862820.1| hypothetical protein ANASTE_02047 [Anaerofustis stercorihominis DSM 17244] gi|169258365|gb|EDS72331.1| hypothetical protein ANASTE_02047 [Anaerofustis stercorihominis DSM 17244] Length = 229 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I R SQE L E LG++ Q V K+E ++ +SE+ P + Sbjct: 1 MTIGNKIMTLRRENNFSQEILAEKLGVSRQAVSKWEAEQCLPDIDKIVKLSELFSVPTDY 60 Query: 73 FFDVSPT 79 Sbjct: 61 ILKEDYE 67 >gi|167761576|ref|ZP_02433703.1| hypothetical protein CLOSCI_03987 [Clostridium scindens ATCC 35704] gi|167660719|gb|EDS04849.1| hypothetical protein CLOSCI_03987 [Clostridium scindens ATCC 35704] Length = 476 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 44/102 (43%), Gaps = 1/102 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK I RR SQE + +G++ Q V K+EK ++ + ++E+L + Sbjct: 6 MSLGKNIASRRKSQNFSQEDIATLVGVSRQAVSKWEKDLSSPSTENIIRLAEILRVSVEE 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL-NRYFIQIDDV 113 P + + S L + +R FI++ + Sbjct: 66 LTGGRPAAAGRDREDRSVYRVSDSRYLWLLIKDRLFIRLANP 107 >gi|254249643|ref|ZP_04942963.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] gi|124876144|gb|EAY66134.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] Length = 200 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 11/143 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 N + + V +G +IR R L + + GI+ + + E+G+ + L Sbjct: 13 TENSRSADAV--ALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAG 70 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L + +F D S ++ F + F ++ +V +++ Sbjct: 71 IAHALGVTVQYFVDTPSEERSVCRGDQLRFFGFADS------ANLFARLTNVSEGRQLEA 124 Query: 122 LVRSIVSSEKKYR---TIEEECM 141 ++ + +K+ EE + Sbjct: 125 ILVRMPPGQKRSEVTTHAGEEFL 147 >gi|77409837|ref|ZP_00786476.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77171552|gb|EAO74782.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 148 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 39/98 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++QE+L +G++ + ++E G ++ + + +++ + + Sbjct: 2 NRLKELRKEKKLTQEELAGEIGVSKITILRWENGERQIKPDKAKELAKYFNVSVGYLLGY 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +P D + ++ L L I +K Sbjct: 62 APNKKIDFQLNLDGTTLHLTKEQFLALENTSKSIKKIK 99 >gi|107027653|ref|YP_625164.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693636|ref|YP_839169.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170737089|ref|YP_001778349.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105897027|gb|ABF80191.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116651636|gb|ABK12276.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] gi|169819277|gb|ACA93859.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 192 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 11/143 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 N + + V +G +IR R L + + GI+ + + E+G+ + L Sbjct: 5 TENSRSADAV--ALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAG 62 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L + +F D S ++ F + F ++ +V +++ Sbjct: 63 IAHALGVTVQYFVDTPSEERSVCRGDQLRFFGFADS------ANLFARLTNVSEGRQLEA 116 Query: 122 LVRSIVSSEKKYR---TIEEECM 141 ++ + +K+ EE + Sbjct: 117 ILVRMPPGQKRSEVTTHAGEEFL 139 >gi|315612472|ref|ZP_07887385.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315315453|gb|EFU63492.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 71 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 26/65 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R +SQ+ L + +G+ + +E G +++ + ++E I + Sbjct: 7 NRIKELRKQSRLSQQALADQIGVFRNTISNWETGYSQISLENAKKVAEYFGVTIDYLLGS 66 Query: 77 SPTVC 81 Sbjct: 67 ESDQT 71 >gi|315302119|ref|ZP_07873074.1| DNA-binding protein [Listeria ivanovii FSL F6-596] gi|313629507|gb|EFR97685.1| DNA-binding protein [Listeria ivanovii FSL F6-596] Length = 180 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD I E + Sbjct: 61 FFDEEEHNQKVIYGELEH 78 >gi|255601036|ref|XP_002537591.1| conserved hypothetical protein [Ricinus communis] gi|223515814|gb|EEF24793.1| conserved hypothetical protein [Ricinus communis] Length = 109 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 28/73 (38%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + P P+ + +GKR++ R SQE L G+ + E+G+ L I Sbjct: 11 RSPTPISVALGKRLKECRHAAEKSQETLAFEAGVDRVYISSIERGLANPSVETLATICYS 70 Query: 66 LESPISFFFDVSP 78 L + F Sbjct: 71 LGVTLGELFTPLD 83 >gi|50914507|ref|YP_060479.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] gi|40218541|gb|AAR83195.1| phage repressor protein [Streptococcus pyogenes] gi|50261586|gb|AAT72354.1| UmuD/MucA-like protein [Streptococcus pyogenes] gi|50903581|gb|AAT87296.1| Phage transcriptional repressor [Streptococcus pyogenes MGAS10394] Length = 229 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 28/56 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ RR+ + +SQ + L + +E G N L ++ +L+ P+++F Sbjct: 6 RLKQRRLEIKLSQTAIANQLNVHRSAYHNWENGRNTPNQKNLTALAAILDVPVTYF 61 >gi|320528760|ref|ZP_08029911.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320130843|gb|EFW23422.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 349 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 6/135 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK ++ R +SQE+L L IT Q V K+E + L I+ + I Sbjct: 13 MTLGKTLKQLRKETFLSQEQLAAKLNITAQAVSKWENEESYPDILFLPKIAAIFGIKIDE 72 Query: 73 FFDVSPTVCSDISSEENNVMDFIS----TPDGLQLNRYFIQIDDVKVRQKII-ELVRSIV 127 FD + N + + + L + + ++ +L Sbjct: 73 LFDYNQESAYQQIENMLNHERYFTHADFSKSENFLVQQLSVNPNDLHALTLLGDLYHEYA 132 Query: 128 -SSEKKYRTIEEECM 141 ++K ++ + Sbjct: 133 LKLDEKAAAYTKQAL 147 >gi|71903695|ref|YP_280498.1| phage transcriptional repressor [Streptococcus phage 6180.1] gi|71802790|gb|AAX72143.1| phage transcriptional repressor [Streptococcus phage 6180.1] Length = 247 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 11/125 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R M+Q++L + G + +E G ++ ++ ++ L+ F Sbjct: 4 LGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGNRQLDEVDIRKYAKALKIEPQQLF 63 Query: 75 DVSPTVCSDISSEENNVMDFI-STPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D S + + + + I ST L+ +R I +++ +++ +K+ Sbjct: 64 DYSSSPTNPQVELIPSTLQKINSTSSQLEHSRQII----------VLDTAETLLEQQKEI 113 Query: 134 RTIEE 138 + E+ Sbjct: 114 KNNED 118 >gi|323435994|ref|ZP_01049570.2| transcription regulator [Dokdonia donghaensis MED134] gi|321496309|gb|EAQ39542.2| transcription regulator [Dokdonia donghaensis MED134] Length = 274 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K P +G++I R G++QE+L I+ + +Q+ E G ++ Sbjct: 1 MM---KQP-----ELGQKILELRQQKGLTQEELVAQCNISVRTIQRIEAGETMPRVYTIK 52 Query: 61 HISEVLESPISFFFDV 76 I L+ + + Sbjct: 53 TILSALDRDLDDLQED 68 >gi|295702409|ref|YP_003595484.1| transcriptional regulator [Bacillus megaterium DSM 319] gi|294800068|gb|ADF37134.1| transcriptional regulator [Bacillus megaterium DSM 319] Length = 180 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 39/86 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ G++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSLETFFSILEVLGCEPKE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 FF++ V + EE+ Sbjct: 61 FFEIDTHVQKVVYREEDYTSYCEDEK 86 >gi|293401719|ref|ZP_06645861.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304977|gb|EFE46224.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 139 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 55/112 (49%), Gaps = 11/112 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R+ GMSQ+ L + L +T Q + K+E+G++ A L +SE+ E +S + Sbjct: 4 ENLKTLRIEKGMSQQFLADQLHVTRQTISKWERGLSVPDADMLIALSEMFEVSVSTLLN- 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRSIV 127 ++ E+ + ++ L + +Q+ R +K+ +++R I Sbjct: 63 -----RSVNEEDTSESTLLAEK----LEQLNLQLAQRNQRSRKVWKVIRFIA 105 >gi|283768814|ref|ZP_06341725.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104600|gb|EFC05973.1| DNA-binding protein [Bulleidia extructa W1219] Length = 331 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 46/111 (41%), Gaps = 1/111 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE+L + L ++ Q V K+E + +++ +S+V + Sbjct: 1 MILADKIITLRKKNGWSQEELADQLEVSRQSVSKWEGAQSIPDMNKILKLSKVFGVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + + E + + ++ F+Q ++ + + ++ Sbjct: 61 LLKDEIVIAENETQPETDNHSAEVS-VSMEEANAFLQFKNISSSRIALGVM 110 >gi|257892777|ref|ZP_05672430.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|257829156|gb|EEV55763.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] Length = 221 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNRNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 >gi|229815890|ref|ZP_04446214.1| hypothetical protein COLINT_02946 [Collinsella intestinalis DSM 13280] gi|229808585|gb|EEP44363.1| hypothetical protein COLINT_02946 [Collinsella intestinalis DSM 13280] Length = 238 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KRIR R G+SQ +L + + ++ Q V +EKG A L+ +S + Sbjct: 37 LAKRIRGLREGAGISQARLAKLVFVSRQTVINWEKGRTLPDAESLKRLSAAFGITLDALL 96 Query: 75 DVSPTV 80 D Sbjct: 97 DERSEE 102 >gi|254385485|ref|ZP_05000812.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194344357|gb|EDX25323.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 192 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++ P P + VG+ IR R G+S L G++ + + E+G+ S + Sbjct: 1 MVSRPEPTPEAVEVGRVIRAWRKRRGISMASLAAGSGLSQPFLSQLERGLATPSLSSIYR 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 I+E L+ F P +S E + + +S G Sbjct: 61 IAEALDVTPGTFL-RPPDRPGAVSHESDPQVIRVSEAAG 98 >gi|183597550|ref|ZP_02959043.1| hypothetical protein PROSTU_00829 [Providencia stuartii ATCC 25827] gi|188023147|gb|EDU61187.1| hypothetical protein PROSTU_00829 [Providencia stuartii ATCC 25827] Length = 132 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 40/98 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R M+ ++LGE L ++ QQ+ +YE GV + L + +L+ PI FF Sbjct: 33 IGRQIYFIRKARCMTGKQLGEQLNVSQQQISRYENGVCHIDVDTLIRLLYILDMPIDQFF 92 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 S + P N + I Sbjct: 93 SQVSVRLSQQFPATYAKYHSLFIPVVDSSNNEYRLIKS 130 >gi|159043315|ref|YP_001532109.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911075|gb|ABV92508.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 130 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 11/123 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R +G++Q +L + LG+ + ++ +E+ ++ A+R+Q +S +L +S+ Sbjct: 16 GDRLAGAREAVGLTQAQLAKRLGVKAKTLRDWEEDLSEPRANRIQMLSGLLNVSLSWLMT 75 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + D L R +V+ ++ L + EK+ R Sbjct: 76 GEGEGIDAPDLGSDMPGD---VRAALTELR--------QVQAEMTRLSGRMARLEKRLRK 124 Query: 136 IEE 138 E Sbjct: 125 SLE 127 >gi|222054772|ref|YP_002537134.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221564061|gb|ACM20033.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 181 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 6/127 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ RMI ++QE+L +T + + E + L+ I +V + Sbjct: 1 MKIGERLKRLRMINSLTQEELASRADLTKGYISQLENDATSPSIATLKDIIDVFGVSMQE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF + + ++L I + R +V ++ E+ Sbjct: 61 FFSETIDEDVVYGKDYRVQASGDDEKIRVELL-----IPAAQNRDMDPAMV-TLEPGEEM 114 Query: 133 YRTIEEE 139 E Sbjct: 115 EEQPFHE 121 >gi|320334222|ref|YP_004170933.1| XRE family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755511|gb|ADV67268.1| transcriptional regulator, XRE family [Deinococcus maricopensis DSM 21211] Length = 64 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 21/62 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR+ R G +Q L L ++ Q V E G I+ P+ F Sbjct: 3 NRIRVLRTERGWTQADLANHLDVSRQTVNALETGRYDPSLPLAFRIARTFALPLEAIFTP 62 Query: 77 SP 78 Sbjct: 63 DD 64 >gi|239814040|ref|YP_002942950.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239800617|gb|ACS17684.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 195 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 37/86 (43%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P ++ + +R+R R G+S E L G++ + E+G + A L+ ++ L Sbjct: 5 PPSLNDRIAQRVRDLRADRGLSLEALAAHCGVSRSMISLIERGESSPTAVLLEKLATGLG 64 Query: 68 SPISFFFDVSPTVCSDISSEENNVMD 93 P++ F+ +S + + Sbjct: 65 VPLASLFEAPVPASGPVSRLADQLQW 90 >gi|161526154|ref|YP_001581166.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189349130|ref|YP_001944758.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160343583|gb|ABX16669.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] gi|189333152|dbj|BAG42222.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 183 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 37/96 (38%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + V +R+R R G+SQ +L + G+T + E+G L+ + E + + Sbjct: 1 MSTEVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + FF + S + + + + L Sbjct: 61 AEFFTFELVESRSVVSRRDEMPNLGNESLAFHLVGA 96 >gi|86355908|ref|YP_467800.1| LacI family transcription regulator [Rhizobium etli CFN 42] gi|86280010|gb|ABC89073.1| probable transcriptional regulator protein, LacI family [Rhizobium etli CFN 42] Length = 189 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 2/92 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + ++ +G RIR R+ G++ ++L E G++ + + E+ AS L + L Sbjct: 1 MEQELEQAIGIRIRTLRLEKGLTLDELAEASGVSRAMISRIERAEASPTASLLARVCAAL 60 Query: 67 ESPISFFF--DVSPTVCSDISSEENNVMDFIS 96 +S FF + E+ D + Sbjct: 61 GLSLSAFFAEEGQQASPLARRQEQQVWRDPET 92 >gi|15967045|ref|NP_387398.1| putative aldehyde dehydrogenase protein [Sinorhizobium meliloti 1021] gi|307302508|ref|ZP_07582265.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307316162|ref|ZP_07595606.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|17646727|gb|AAL41014.1|AF448466_4 putative aldehyde dehydrogenase [Sinorhizobium meliloti] gi|15076318|emb|CAC47871.1| Putative aldehyde dehydrogenase [Sinorhizobium meliloti 1021] gi|306898002|gb|EFN28744.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306903178|gb|EFN33768.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 182 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 35/84 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L + G+T + E + L+ I + + + Sbjct: 1 MSVDIGSRLRQVRLRHKLSQRELAKRAGVTNSTISLIESNASNPSVGALKRILDGIPIGL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF P +++ Sbjct: 61 AEFFSFEPEKSRRAFYAAEELVEI 84 >gi|313123989|ref|YP_004034248.1| peptidase s24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280552|gb|ADQ61271.1| Peptidase S24-like protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 209 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 7/107 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ-------VQKYEKGVNRVGASRLQHISEV 65 +++G RIRL R M+ E+L L + K+E S L ++ Sbjct: 1 MSIGTRIRLLRKSKKMTLEELANQLNSRSSSSGFTKGRLSKWENDREEPKLSSLNQVARF 60 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 I +FF+ S + S + I T I D Sbjct: 61 FNVDIDYFFNDSHPSNTLPLSRNTIRVPVIGTIACGDPIDADENIVD 107 >gi|307352662|ref|YP_003893713.1| XRE family transcriptional regulator [Methanoplanus petrolearius DSM 11571] gi|307155895|gb|ADN35275.1| transcriptional regulator, XRE family [Methanoplanus petrolearius DSM 11571] Length = 83 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI++ R + M+QE+L E + +T + + E+G I+++ P+ F Sbjct: 8 NRIKVYRAMHDMTQEELAEKIRVTRKTINSIERGKYNPSIEVAFKIAKIFRVPVEKIFFF 67 Query: 77 SPTVCSDISSEENNVM 92 D+ + ++ Sbjct: 68 EDETPEDVIEDPSSPD 83 >gi|251778140|ref|ZP_04821060.1| transcriptional regulator, XRE family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082455|gb|EES48345.1| transcriptional regulator, XRE family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 113 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R+ ++QE+ G+ + V +YE G +R + I+ + + Sbjct: 6 LGNRIKTLRLESKLTQEEFGKPYALKKSTVSQYESGSSRPDDELKKRIALDYNVSLDWLM 65 Query: 75 DVSPTVCSDISSE 87 ++ S Sbjct: 66 GLTDARNYSDDSN 78 >gi|146301370|ref|YP_001195961.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155788|gb|ABQ06642.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 135 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 51/131 (38%), Gaps = 4/131 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R + M QE L + +G Q + + + +L +++ L + Sbjct: 9 HMGRKISRIRELKDMKQEALAQAMGTNQQAI-SIMENSETIEEEKLIEVAKALGVSVEAI 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + S + + N+ + + N I+ + + I+L +V +EK Sbjct: 68 KNFSEEGVFNYFNTFNDSGNNTFANNVCNFNPLDKLIESHEQQ---IKLYERLVQAEKDK 124 Query: 134 RTIEEECMVEQ 144 E+ + + Sbjct: 125 VEYLEKLLKAK 135 >gi|78222121|ref|YP_383868.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193376|gb|ABB31143.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 181 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 6/127 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ RMI ++QE+L +T + + E + L+ I +V + Sbjct: 1 MKIGERLKRLRMINSLTQEELANRADLTKGYISQLENDATSPSIATLKDILDVFGVSMQE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF + ++L + + R+ LV ++ E+ Sbjct: 61 FFSDPIGEDVVYGKDARVQPSADDAAVTVELL-----VPGAQNREMDPALV-TLAPGEEM 114 Query: 133 YRTIEEE 139 E Sbjct: 115 DEQNFHE 121 >gi|148545002|ref|YP_001272372.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184154336|ref|YP_001842677.1| transcription regulator [Lactobacillus reuteri JCM 1112] gi|227364146|ref|ZP_03848243.1| XRE family transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325683349|ref|ZP_08162865.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|148532036|gb|ABQ84035.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] gi|183225680|dbj|BAG26197.1| transcription regulator [Lactobacillus reuteri JCM 1112] gi|227070785|gb|EEI09111.1| XRE family transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324977699|gb|EGC14650.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 206 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 29/74 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R +Q+ + E L I+ + + +E G + L IS++ + Sbjct: 6 KMKLYRRQKEWTQQDVAERLLISRKTISSWENGRSYPDIFMLVQISDLYHVSLDDLLRED 65 Query: 78 PTVCSDISSEENNV 91 + ++ E Sbjct: 66 HEMINNYKEEHTMN 79 >gi|83954022|ref|ZP_00962742.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83841059|gb|EAP80229.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 466 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 45/128 (35%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L +Q++ LG++ + + E V + + ++ ++ Sbjct: 9 GAKLRELRTNLAHTQKEFAARLGVSLPYLNQMENNNRPVSTTVVLALASEFGMDVTELSS 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E + F L + + + + I+L +S ++++ Sbjct: 69 GDSERLVSDMREVLSDPVFEGDVLPLADVQLAAS-NAPGLARAFIKLHQSHRQTQERLAY 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|325674671|ref|ZP_08154358.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|325554257|gb|EGD23932.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 85 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 34/85 (40%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + +G IR R G++Q +L + GI+ + + E G V +L Sbjct: 1 MDTDTTRDAIRNAIGNEIRAARARRGITQNELADQSGISHTTIVRLESGKRTVDVVQLFA 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISS 86 I +VL+ D + + S Sbjct: 61 ICKVLDVDPGVLLDAAQSAQGAEES 85 >gi|291523310|emb|CBK81603.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 336 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 33/95 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE+L LG++ Q V K+E R+ +SE+ + Sbjct: 1 MILADKITEERKKNGWSQEELANQLGVSRQAVSKWESAGAVPDLQRILQMSELFCVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + E + ++ F Sbjct: 61 LLKDEMKAENITYHESSESYAEPLKKVTMENANEF 95 >gi|268610635|ref|ZP_06144362.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 223 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 8/111 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I+ R LGM+Q++L E + ++ + V K+E+G S L +++V + I Sbjct: 29 GQLIKRLRTELGMTQKQLAERINVSDKAVSKWERGNGCPDVSLLSALADVFGTDIRVLLS 88 Query: 76 VSPTVCSDISSEENN--------VMDFISTPDGLQLNRYFIQIDDVKVRQK 118 N + I++ + + K R+ Sbjct: 89 GEIDKNESEKGNMKNLKFYVCKDCGNIITSTSEASVTCCGNHLSAPKPRKA 139 >gi|256396383|ref|YP_003117947.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362609|gb|ACU76106.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 189 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 24/81 (29%), Gaps = 1/81 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEV 65 P+ +G RIR R+ G+S L + + E G L I+ Sbjct: 5 TPSDFATQIGARIRRLRLERGVSLSALARDAAVGKATLSGLEDGSRGNPTIETLYAIAGR 64 Query: 66 LESPISFFFDVSPTVCSDISS 86 L PI P Sbjct: 65 LGVPIGALLPDPPHPGEKPLE 85 >gi|167746879|ref|ZP_02419006.1| hypothetical protein ANACAC_01591 [Anaerostipes caccae DSM 14662] gi|317471690|ref|ZP_07931031.1| hypothetical protein HMPREF1011_01379 [Anaerostipes sp. 3_2_56FAA] gi|167653839|gb|EDR97968.1| hypothetical protein ANACAC_01591 [Anaerostipes caccae DSM 14662] gi|316900794|gb|EFV22767.1| hypothetical protein HMPREF1011_01379 [Anaerostipes sp. 3_2_56FAA] Length = 194 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ R ++Q +L E + I+ + + K+E+G+ S +S V + + Sbjct: 6 IGKLIKTLRKEKQLTQMQLAEHMNISDKTISKWERGLGCPDISFFPKLSGVFDVDLEKLL 65 Query: 75 DVSPTVCSDISSEENNVMDFI 95 V + ++ +I Sbjct: 66 SGRLDVNEVLGGNMKHMQFYI 86 >gi|226366458|ref|YP_002784241.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226244948|dbj|BAH55296.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 184 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 4/110 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R R GMS ++ G+ + + E G L + L+ P+S Sbjct: 9 YIGPSLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGNPSVETLWALCVALDVPMSQL 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 D I ++E T D + R+ + L Sbjct: 69 LDPPRPRVQVIRADEG----PELTSDRADYRATLVASCPPSARRDLYRLA 114 >gi|218459941|ref|ZP_03500032.1| probable transcriptional regulator protein [Rhizobium etli Kim 5] Length = 90 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%) Query: 65 VLESPISFFFDVSPT-----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +L + SFFF+ + D + V +F+ T +GL LNR F++I D ++R I Sbjct: 1 MLHTSPSFFFEQDDSERLAVRELDAPDHADPVAEFLRTKEGLVLNRAFLKIADPQIRATI 60 Query: 120 IELVRSIVSSEKKYRTI 136 I LV ++ +E + T+ Sbjct: 61 IALVTAMGQAESRGPTL 77 >gi|184155136|ref|YP_001843476.1| hypothetical protein LAF_0660 [Lactobacillus fermentum IFO 3956] gi|183226480|dbj|BAG26996.1| hypothetical phage protein [Lactobacillus fermentum IFO 3956] Length = 104 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 31/82 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+RI R MSQ +L + L I + YE + L+ +++ + F Sbjct: 1 MNIGERIAQLRKSRSMSQFQLAKTLNIATSTLGMYETNKRKPNMEMLEKLADFFGVSVDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + ++ F Sbjct: 61 LLGRPEKDDLKTADLADDDTIF 82 >gi|310658350|ref|YP_003936071.1| Xre family transcriptional regulator [Clostridium sticklandii DSM 519] gi|308825128|emb|CBH21166.1| Transcriptional regulator, XRE family [Clostridium sticklandii] Length = 328 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I L R G SQE+L E L ++ Q + K+E + G ++ +SE+ + Sbjct: 1 MILADKIILLRKKSGWSQEELAEKLNVSRQSISKWEGAQSVPGMDKILQLSEIFGVSTDY 60 Query: 73 FFDVSPTVCS 82 S + Sbjct: 61 LLKDSIELEE 70 >gi|294992409|gb|ADF57341.1| transcriptional regulator [Roseburia inulinivorans DSM 16841] Length = 142 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 49/139 (35%), Gaps = 29/139 (20%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + NK +P ++++ R + +Q+ + E LG+ Q YE G A Sbjct: 1 MKNKLLP--------QKLKELRKVNNYTQDYVAEVLGVVRQTYSHYETGKRTPDAEAFYK 52 Query: 62 ISEVLESPISFFFDV----------SPTVCSDISSEENNVMDFISTPDG----------- 100 ++ + + + + S++ + ++F + P Sbjct: 53 LAGLYNISVDDLLHLTIDIDREESYDAPAPTQASTDLSEFLEFFNDPSNKKKYMFNTNLE 112 Query: 101 LQLNRYFIQIDDVKVRQKI 119 +L YF +I D ++ I Sbjct: 113 RELLFYFDKIYDEDKKEII 131 >gi|89055144|ref|YP_510595.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88864693|gb|ABD55570.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 133 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G+SQ +L + LG+ + ++ +E+ + A++L ++ +L + + Sbjct: 20 GDRVTGAREAAGLSQPELAKRLGVRVKTIRAWEQDQSEPRANKLGTLAGILGVSMMWLLA 79 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E ++ +D + L ++RQ+ + L + EK+ R Sbjct: 80 GQGEGLDS--PELSDPLDGDIEKILIDL---------RQMRQEQVSLAERMGLIEKRLRA 128 Query: 136 IE 137 Sbjct: 129 AL 130 >gi|83942852|ref|ZP_00955312.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] gi|83845860|gb|EAP83737.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] Length = 466 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 45/128 (35%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L +Q++ LG++ + + E V + + ++ ++ Sbjct: 9 GAKLRELRTNLAHTQKEFAARLGVSLPYLNQMENNNRPVSTTVVLALASEFGMDVTELSS 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E + F L + + + + I+L +S ++++ Sbjct: 69 GDSERLVSDMREVLSDPVFEGDVLPLADVQLAAS-NAPGLARAFIKLHQSHRQTQERLAY 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|327473429|gb|EGF18849.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 225 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 2/96 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LG++ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLTQASIYQELGVSRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVD- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 T +L +I Sbjct: 64 -ETSALYTYPLLTPPHKKEVDKLASRLLERQRKISS 98 >gi|308068246|ref|YP_003869851.1| transcriptional regulator ydcN [Paenibacillus polymyxa E681] gi|305857525|gb|ADM69313.1| Putative HTH-type transcriptional regulator ydcN [Paenibacillus polymyxa E681] Length = 182 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G + R G+S +K+ E G++ + + EKG + + L I+ L S F Sbjct: 8 IGSNLAQIRKTRGLSLDKVAELTGVSKGMLAQIEKGKSNPTVTTLWKIANGLHVSFSTFL 67 Query: 75 DVSPTVCSDISSEE 88 P + I E+ Sbjct: 68 KEDPPQITKIRRED 81 >gi|302380010|ref|ZP_07268489.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|302312236|gb|EFK94238.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] Length = 174 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 35/72 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE+L + + Q V K+E+G++ + L +SE+L + +S Sbjct: 4 ENIKSLRKQNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVLLGE 63 Query: 77 SPTVCSDISSEE 88 + ++ Sbjct: 64 NIEEIQQTELDK 75 >gi|256061267|ref|ZP_05451417.1| hypothetical protein Bneo5_12993 [Brucella neotomae 5K33] Length = 470 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIV 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 63 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 114 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 115 HQAYRRNSEQL 125 >gi|268318350|ref|YP_003292068.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252] gi|262335884|gb|ACY49680.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252] Length = 347 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI+ R+ G+S KL + +G++ + KYEKGV + L ++ L+ SF Sbjct: 1 MSIGARIKQARIRQGLSLRKLAKEVGVSQTAISKYEKGVITPDSQMLIRLARALDVKPSF 60 Query: 73 FF 74 F Sbjct: 61 FL 62 >gi|154503727|ref|ZP_02040787.1| hypothetical protein RUMGNA_01551 [Ruminococcus gnavus ATCC 29149] gi|153795827|gb|EDN78247.1| hypothetical protein RUMGNA_01551 [Ruminococcus gnavus ATCC 29149] Length = 387 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 39/92 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +GKRI+ R G++QE++ L I+ V K+E + L ++ +L + Sbjct: 24 MELKIGKRIQDLRKQKGLTQEQVAAALNISAAAVSKWETDTTYPDITILNPLARLLGVSV 83 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 D + + + D + + + Sbjct: 84 DVLLDFQEQMTEEECMKRMEKADTLFSTRNWE 115 >gi|70729282|ref|YP_259019.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68343581|gb|AAY91187.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 104 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q +LGE G + + ++E G L ++EVL + FF Sbjct: 6 LGAAIKRYRKVAGLTQAELGEKTGFDPKTISRFETGTYTPSVEALFLLAEVLGVKLKAFF 65 Query: 75 DVSPTVCSDIS 85 + Sbjct: 66 ADLGDEEEQRA 76 >gi|329767054|ref|ZP_08258582.1| hypothetical protein HMPREF0428_00279 [Gemella haemolysans M341] gi|328837779|gb|EGF87404.1| hypothetical protein HMPREF0428_00279 [Gemella haemolysans M341] Length = 181 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 50/110 (45%), Gaps = 1/110 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R+ ++QE+LGE ++ + + E+ + +I +VL FF Sbjct: 4 IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPKDFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 D + + + + T +G +L + ++ ++ I++L + Sbjct: 64 D-KESTSQKVYYSLEDQTSYEETDEGYELTWLVPESNEKEMESLILKLEK 112 >gi|304439266|ref|ZP_07399183.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372234|gb|EFM25823.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 185 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R G+SQE+L +G++ Q V K+E G + ++ +S+ + Sbjct: 6 RIQYLRKTNGISQEELAVKVGVSRQAVSKWESGQSLPDLEKIITMSDYFGVTTDYILKGI 65 Query: 78 PTVCSDISSEENNVMDFI 95 V + Sbjct: 66 EPVADKEQKSSELKSKIL 83 >gi|268591987|ref|ZP_06126208.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] gi|291312378|gb|EFE52831.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] Length = 87 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 36/64 (56%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G ++R RR+ +G + LG+ G++ QQ+ +YE+G RL + VL+ + Sbjct: 10 NAYIGLQVRKRRLQMGWTAHTLGKKSGLSQQQISRYERGTQNFTIHRLCIFANVLQCDLD 69 Query: 72 FFFD 75 +F + Sbjct: 70 YFLE 73 >gi|160916079|ref|ZP_02078286.1| hypothetical protein EUBDOL_02106 [Eubacterium dolichum DSM 3991] gi|158431803|gb|EDP10092.1| hypothetical protein EUBDOL_02106 [Eubacterium dolichum DSM 3991] Length = 194 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 1/93 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ R +SQE+L + ++ Q + +E + L +S + + Sbjct: 1 MDIGLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDIKSLITLSNIFNVSLDN 60 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + + + + IS ++L Sbjct: 61 FIKEDIKEMREIVEKATITKFNVISVVFLIELI 93 >gi|154502378|ref|ZP_02039438.1| hypothetical protein RUMGNA_00191 [Ruminococcus gnavus ATCC 29149] gi|153797003|gb|EDN79423.1| hypothetical protein RUMGNA_00191 [Ruminococcus gnavus ATCC 29149] Length = 126 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 48/126 (38%), Gaps = 6/126 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R LG++ +K GE LG+ + K EK + ++ I + D Sbjct: 4 GERVLEIRKALGLTMDKFGEKLGVQKSAISKIEKDRVNLSDQMVKLICREYNVNYDWLMD 63 Query: 76 VSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + SD+ + + + ++ + VR I + ++ +K Sbjct: 64 GEGEMFSDLPQTVLDELCSQYELDDLDRFIVELYVGLPKD-VRDGIKARAKDLI---QKR 119 Query: 134 RTIEEE 139 T EE+ Sbjct: 120 NTSEEK 125 >gi|154498814|ref|ZP_02037192.1| hypothetical protein BACCAP_02805 [Bacteroides capillosus ATCC 29799] gi|150272204|gb|EDM99408.1| hypothetical protein BACCAP_02805 [Bacteroides capillosus ATCC 29799] Length = 198 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 1/94 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R GM+Q++L IT + K E L++++ L P + Sbjct: 1 MTLGQKIREARQSKGMTQKELVGDY-ITRNMLSKIENDSAIPSVRTLEYLAGALGFPTGY 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 F +P + Sbjct: 60 FLSGAPVSDGTAPDGLDEARAAYREHRWTDCLAA 93 >gi|154497828|ref|ZP_02036206.1| hypothetical protein BACCAP_01806 [Bacteroides capillosus ATCC 29799] gi|150273326|gb|EDN00471.1| hypothetical protein BACCAP_01806 [Bacteroides capillosus ATCC 29799] Length = 122 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK N + +G R++ R G++QE+L E + IT Q + E+G + LQ Sbjct: 1 MTEKKAGN---VQIGARVKEAREAAGLTQERLAELIDITAQYLSGVERGAVGLSVPVLQR 57 Query: 62 ISEVLESPISFFFDVSPTVCS 82 + VL + + Sbjct: 58 LCSVLLVSSDYILTGNTETSD 78 >gi|148378839|ref|YP_001253380.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932486|ref|YP_001383224.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153934537|ref|YP_001386771.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288323|emb|CAL82400.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152928530|gb|ABS34030.1| HTH domain protein [Clostridium botulinum A str. ATCC 19397] gi|152930451|gb|ABS35950.1| HTH domain protein [Clostridium botulinum A str. Hall] Length = 373 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 59/141 (41%), Gaps = 13/141 (9%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+N+GK I +R G++QE+L +G++ V K+E G + L ++ + Sbjct: 3 DLNIGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNISVD 62 Query: 72 FFFDVSPTVCSD--------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 SP + + +S E + +L + + + II+L+ Sbjct: 63 ELLGYSPQLTKEDIKKIYSKLSHEFAVRPFDEAMEQCNKLIKKYYSCFPFLL--SIIQLL 120 Query: 124 ---RSIVSSEKKYRTIEEECM 141 +++ ++ + I ++C+ Sbjct: 121 LNHSNLIKNDAIKKEIFQQCV 141 >gi|62290098|ref|YP_221891.1| Cro/CI family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|82700021|ref|YP_414595.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189024336|ref|YP_001935104.1| Helix-turn-helix motif [Brucella abortus S19] gi|254689408|ref|ZP_05152662.1| Helix-turn-helix motif [Brucella abortus bv. 6 str. 870] gi|254697542|ref|ZP_05159370.1| Helix-turn-helix motif [Brucella abortus bv. 2 str. 86/8/59] gi|254730437|ref|ZP_05189015.1| Helix-turn-helix motif [Brucella abortus bv. 4 str. 292] gi|256257654|ref|ZP_05463190.1| Helix-turn-helix motif [Brucella abortus bv. 9 str. C68] gi|260546647|ref|ZP_05822386.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260758145|ref|ZP_05870493.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260883939|ref|ZP_05895553.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|297248496|ref|ZP_06932214.1| helix-turn-helix domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|62196230|gb|AAX74530.1| transcriptional regulator, Cro/CI family [Brucella abortus bv. 1 str. 9-941] gi|82616122|emb|CAJ11165.1| Helix-turn-helix motif [Brucella melitensis biovar Abortus 2308] gi|189019908|gb|ACD72630.1| Helix-turn-helix motif [Brucella abortus S19] gi|260095697|gb|EEW79574.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260668463|gb|EEX55403.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260873467|gb|EEX80536.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|297175665|gb|EFH35012.1| helix-turn-helix domain-containing protein [Brucella abortus bv. 5 str. B3196] Length = 470 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQSENNQRPVSAAVLLALAENYQID 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 63 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 114 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 115 HQAYRRNSEQL 125 >gi|322383792|ref|ZP_08057543.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152004|gb|EFX44947.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 137 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 52/115 (45%), Gaps = 3/115 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R+ G SQE+ + +G+ + YE G N + L I+E + + + Sbjct: 26 RLREMRLKNGYSQEEFAKKVGLKRTNIANYESGRNTPPSQILGKIAEGFNTSTDYLLGKT 85 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 S + + + ++ +++ + + RQ +I+L+RS++ +K+ Sbjct: 86 DNPESLKVRDLDAISIDDLQNFKIEY--RGVELTEDEKRQ-VIKLLRSVLELKKE 137 >gi|299770452|ref|YP_003732478.1| transcriptional regulator [Acinetobacter sp. DR1] gi|298700540|gb|ADI91105.1| transcriptional regulator [Acinetobacter sp. DR1] Length = 197 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 31/66 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++I + +++R R+ G + + L ++ + E+G A L+ ++ L P Sbjct: 3 DINIRIAQQVRELRLARGYTLDILATRCQVSRSAISLIERGEASPTAVVLEKLANGLGVP 62 Query: 70 ISFFFD 75 ++ FD Sbjct: 63 LTQLFD 68 >gi|291544051|emb|CBL17160.1| Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Ruminococcus sp. 18P13] Length = 770 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 45/115 (39%), Gaps = 6/115 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + V +RIR R +G+S E++ + ++ ++ + E G + + + ++ Sbjct: 5 MDHAI-KEVAERIRAVREDVGLSVEEMAKRTDVSVEEYKALEAGQSDFSFTFIYKCAKAC 63 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ + + + I +G + ++ + R KI E Sbjct: 64 GVEITDVMEGESPKVTSYTVTRAGKGLPIVRREGF----AYYRLA-PQFRHKISE 113 >gi|256025208|ref|ZP_05439073.1| hypothetical protein E4_17688 [Escherichia sp. 4_1_40B] gi|301325184|ref|ZP_07218708.1| helix-turn-helix protein [Escherichia coli MS 78-1] gi|300847945|gb|EFK75705.1| helix-turn-helix protein [Escherichia coli MS 78-1] Length = 185 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 43/121 (35%), Gaps = 1/121 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ G+SQE + G + + E+G + ++ ++ L Sbjct: 32 MKKSLRIQFGERVKELRIATGLSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANAL 91 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI-QIDDVKVRQKIIELVRS 125 P+ +D D GL R + D +++ + Sbjct: 92 SVEPWQLLAPGPSEDNDSELLVPYAADGSCFHPGLASTRDGSFGVGDKAAQKRFGTFAEA 151 Query: 126 I 126 + Sbjct: 152 L 152 >gi|238026932|ref|YP_002911163.1| DNA-binding protein [Burkholderia glumae BGR1] gi|237876126|gb|ACR28459.1| DNA-binding protein [Burkholderia glumae BGR1] Length = 189 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 40/103 (38%), Gaps = 2/103 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R LG+S + L E G+T + K E+G++ + +++ L + F Sbjct: 5 RLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLAQALHVEVGQLFSAD 64 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + + + + I R++++ Sbjct: 65 GDEQAITVVRADERLRM--SRAPDDAQSGYEVIAAEAGRKRLL 105 >gi|228945460|ref|ZP_04107812.1| hypothetical protein bthur0007_16220 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814213|gb|EEM60482.1| hypothetical protein bthur0007_16220 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 149 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENN 90 + + I +E N Sbjct: 61 LIKGNQNIKEKIHIDEEN 78 >gi|257413729|ref|ZP_05591775.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia intestinalis L1-82] gi|257202528|gb|EEV00813.1| transcriptional regulator of NagC/XylR family, sugar [Roseburia intestinalis L1-82] Length = 403 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G++Q + E LGI+ Q V K+E G + L ISE+L+ I Sbjct: 30 ENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGQSCPSIENLCVISEILDVSIDTLIGE 89 Query: 77 SPTVCS 82 + Sbjct: 90 NSDSEK 95 >gi|169351280|ref|ZP_02868218.1| hypothetical protein CLOSPI_02059 [Clostridium spiroforme DSM 1552] gi|169292342|gb|EDS74475.1| hypothetical protein CLOSPI_02059 [Clostridium spiroforme DSM 1552] Length = 160 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 33/90 (36%), Gaps = 6/90 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + NKK ++++ + R M+ E++ + ++ Q V K+E G + Sbjct: 4 MNNKK----INLH--SNLIFLRKANNMTLEEVANEINVSRQAVAKWENGDSVPDLINCVA 57 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNV 91 ++++ + + + + Sbjct: 58 LADLYDVSVDDLLHYDGEKEEASIAPKGKH 87 >gi|110802950|ref|YP_698753.1| helix-turn-helix domain-containing protein [Clostridium perfringens SM101] gi|110683451|gb|ABG86821.1| DNA-binding protein [Clostridium perfringens SM101] Length = 433 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ ++L IT Q+ E G + L++I+ L + + + Sbjct: 6 LGEKIKRRRKELNMTLKELAGE-RITPGQISLVESGRSNPSMDLLEYIAITLNTSVEYLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF--IQIDDVKVRQKIIELVRSIVSSEKK 132 + T I + + D ++ F I I +++ + Sbjct: 65 ETEKTQAEKICLYYEQIAESAILNDDIKKGEKFIEYAIYYANKYDLIYRKAKNLALKAEM 124 Query: 133 YRTIEEECMVEQ 144 Y EE + +Q Sbjct: 125 YLKSEEYLLAQQ 136 >gi|150017031|ref|YP_001309285.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149903496|gb|ABR34329.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 112 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N N +D +GKRI+ R G+++EK E + I+ + + E G Sbjct: 1 MINLNNINYID--IGKRIKAERERNGLTREKFSELVSISPTYLSQIELGQRHPSLPTTIK 58 Query: 62 ISEVLESPISFFFDVS 77 I+ L + F Sbjct: 59 IASTLHISLDFLVYGE 74 >gi|308173224|ref|YP_003919929.1| Phage PBSX transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|307606088|emb|CBI42459.1| Phage PBSX transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|328553856|gb|AEB24348.1| Phage PBSX transcriptional regulator [Bacillus amyloliquefaciens TA208] gi|328911289|gb|AEB62885.1| Phage PBSX transcriptional regulator [Bacillus amyloliquefaciens LL3] Length = 112 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 13/121 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R +QE++ +G++ + YE G + LQ +++ + Sbjct: 1 MIGGRLKSLRGKK--TQEEVANHIGVSRARYSHYENGRSEPDYETLQKLADYFNVSTDYL 58 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D+ ++ + LQ+ +Q + +Q+ IE + + EK Sbjct: 59 LTGKEPSDEDLFADPD-----------LQIAYRDMQDFSPESKQQAIEFINYLKEKEKNR 107 Query: 134 R 134 R Sbjct: 108 R 108 >gi|289434068|ref|YP_003463940.1| transcriptional regulator, Cro/CI family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170312|emb|CBH26852.1| transcriptional regulator, Cro/CI family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313638856|gb|EFS03917.1| DNA-binding protein [Listeria seeligeri FSL S4-171] Length = 180 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD I E + Sbjct: 61 FFDEEEHNQKVIYGELEH 78 >gi|222530625|ref|YP_002574507.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457472|gb|ACM61734.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 118 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 35/79 (44%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V +GKR++ R G +QE++ + LGIT +Q+ YE G V L ++ + Sbjct: 1 MKEEVYKKIGKRLQELRKQRGFTQEQVAKYLGITQEQLSHYENGKREVSVDILLQLARLY 60 Query: 67 ESPISFFFDVSPTVCSDIS 85 ++ I+ Sbjct: 61 GCDYNYLLGEEQNTDEQIT 79 >gi|206562215|ref|YP_002232978.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] gi|198038255|emb|CAR54209.1| putative transcriptional regulator [Burkholderia cenocepacia J2315] Length = 126 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 12/109 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+RL R LGM+Q + G+ YEKG S L I++ L + + Sbjct: 10 RLRLERKRLGMNQTEFAAAGGVQQHAQVNYEKGARLPDVSYLVGIAD-LGVDVQYLLTGR 68 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + ++ + +L + ++ R+ ++ LV +I Sbjct: 69 TSDPVTLALTSDE-----------ELLLAGFRELKLRERRGVLALVAAI 106 >gi|167582978|ref|ZP_02375852.1| possible transcriptional regulator, XRE family protein [Burkholderia thailandensis TXDOH] Length = 115 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 31/84 (36%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+ I +GKRI+ R SQE L + + E+G+ L +I L Sbjct: 19 PAPISIALGKRIKQCRHEADKSQETLAFEAHVDRTYISAIERGIANPSVETLANICYSLN 78 Query: 68 SPISFFFDVSPTVCSDISSEENNV 91 ++ F V + E Sbjct: 79 VTLAELFAPLDGVSLKPTGERRAN 102 >gi|163848207|ref|YP_001636251.1| helix-turn-helix domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222526115|ref|YP_002570586.1| XRE family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669496|gb|ABY35862.1| helix-turn-helix domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449994|gb|ACM54260.1| transcriptional regulator, XRE family [Chloroflexus sp. Y-400-fl] Length = 181 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 45/120 (37%), Gaps = 5/120 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I R G++ +++ E G+T + + E+ + + L+ +++ ++ Sbjct: 1 MSLGQKIGRLRQERGLTLQEVSEGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVQMTH 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF+ + + + F + L+ + S ++ Sbjct: 61 FFEGEDDQQLGQVVRVADRVRLSLDDAP---VQVFSLLPPNSDLDA--RLIEAYPGSSQQ 115 >gi|149185489|ref|ZP_01863805.1| DNA-binding protein, putative [Erythrobacter sp. SD-21] gi|148830709|gb|EDL49144.1| DNA-binding protein, putative [Erythrobacter sp. SD-21] Length = 242 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 3/95 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R G + L E +G++ + K+E R +Q +++ L+ Sbjct: 129 LGTRIKRLRTTRGFTMCGLAESVGVSKPTLWKWEGDQVRPRHETMQRLAKQLDVSELELV 188 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +P + ++ E + S L R + Sbjct: 189 YGAPGLGKAVALAEGGLDSGAS---LADLIRASRR 220 >gi|111024214|ref|YP_707186.1| DNA-binding protein [Rhodococcus jostii RHA1] gi|110823744|gb|ABG99028.1| possible DNA-binding protein [Rhodococcus jostii RHA1] Length = 184 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 4/110 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R R GMS ++ G+ + + E G L + L+ +S Sbjct: 9 YIGPSLRRERERSGMSLTEVARRAGVAKSTLSQLESGGGNPSVETLWALCVALDVQMSQL 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 D I ++E + + L R+ + L Sbjct: 69 LDPPRPRVQVIRADEGPELTSDRSDYRATLVAS----SPPSARRDLYRLA 114 >gi|110678190|ref|YP_681197.1| transcription regulator, putative [Roseobacter denitrificans OCh 114] gi|109454306|gb|ABG30511.1| transcription regulator, putative [Roseobacter denitrificans OCh 114] Length = 192 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 35/86 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +VG R++ R GMSQ +L E G+ Q+ E + + L+ I L +S Sbjct: 3 DFDVGARLKAIRQQNGMSQRQLAEASGVPHGQISMIETNKSSPSVASLRKILGGLSLGMS 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFIST 97 FF+ + + D S Sbjct: 63 EFFEPDVVEDDKPFYTPSELRDLTSR 88 >gi|172058533|ref|YP_001814993.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171991054|gb|ACB61976.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 181 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ G++QE+LGE ++ + + E+ ++ L + EVL FF Sbjct: 4 IGNKIKNLRLQKGLTQEELGERTDLSKGYISQIEREISSPSIETLFSLLEVLGISAKDFF 63 Query: 75 DVS 77 D Sbjct: 64 DED 66 >gi|257868230|ref|ZP_05647883.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257874497|ref|ZP_05654150.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|257802344|gb|EEV31216.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257808661|gb|EEV37483.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] Length = 176 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++I+ R ++QE+ L +T Q V +E N L I+ + + + Sbjct: 20 MEFGEKIKEVRTRNNLTQEQFATQLHVTRQAVSNWENNRNLPDLEMLIAIATIFQLSLDE 79 Query: 73 F 73 Sbjct: 80 L 80 >gi|126736502|ref|ZP_01752243.1| putative transcriptional regulator [Roseobacter sp. CCS2] gi|126714040|gb|EBA10910.1| putative transcriptional regulator [Roseobacter sp. CCS2] Length = 143 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 46/96 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P + +GKR++ R +G++QE+ L + + + E G VGA ++ ++ + E Sbjct: 32 DPEALQLGKRLKQAREYIGVTQEEAATHLKVRRSAISEMEAGKRGVGALEMKSLASLYER 91 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 P ++F + T + + + +S D +L Sbjct: 92 PTAWFTGETDTPVPEDVTFLARTVSDLSENDRGELA 127 >gi|126727450|ref|ZP_01743284.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126703230|gb|EBA02329.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 465 Score = 50.6 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 48/140 (34%), Gaps = 8/140 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M GNK I G +++ R L ++Q + LG++ + + E V + + Sbjct: 1 MAGNK-------IYAGAKLKEMRTRLTLTQAVFAQKLGVSLPYLNQMENNNRPVSTTVVL 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ ++ +E + F T L R + + + + Sbjct: 54 ALASEFGLDVTELNSSDAARLVADMAEVTSDPVFGQTTPSLADIRLVAA-NAPGLARSFL 112 Query: 121 ELVRSIVSSEKKYRTIEEEC 140 +L ++ + +EE Sbjct: 113 DLHQAYKQGHDRLAVMEEAL 132 >gi|256827543|ref|YP_003151502.1| putative transcriptional regulator [Cryptobacterium curtum DSM 15641] gi|256583686|gb|ACU94820.1| predicted transcriptional regulator [Cryptobacterium curtum DSM 15641] Length = 197 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + KR+ R G+SQE++ + ++ Q V K+E L ++ + + Sbjct: 3 IEIAKRLYEYRRAAGLSQEQVAAKIDVSRQAVSKWECAEASPDTDNLIALALLYGITVDE 62 Query: 73 FFDVSPTVCSDISS 86 P + Sbjct: 63 LLFADPEKAIGEAP 76 >gi|226322738|ref|ZP_03798256.1| hypothetical protein COPCOM_00510 [Coprococcus comes ATCC 27758] gi|225208899|gb|EEG91253.1| hypothetical protein COPCOM_00510 [Coprococcus comes ATCC 27758] Length = 106 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++I+ R L M+Q+ +GI + YE GV L I++ + + F Sbjct: 24 ISEKIKELRTDLKMNQKNFSAAIGIRQSTLSSYENGVVTPSNDVLLTIAQKFHVSLDWLF 83 Query: 75 DVSPTVCS 82 +S Sbjct: 84 GLSENKVQ 91 >gi|182436872|ref|YP_001824591.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777467|ref|ZP_08236732.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178465388|dbj|BAG19908.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657800|gb|EGE42646.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 210 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 4/96 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V VG R+R R GM+ +L E GI+ + + E G + L ++EV P+ Sbjct: 22 VLAAVGPRLRELRRRHGMTLAELAERTGISESTLSRLEGGTRKPTLELLLPLAEVHAVPL 81 Query: 71 SFFF----DVSPTVCSDISSEENNVMDFISTPDGLQ 102 P + + + +S P G+Q Sbjct: 82 DELVGAPRTGDPRIHLRPVTRDGLTYVPLSRPGGVQ 117 >gi|167588944|ref|ZP_02381332.1| transcriptional regulator, XRE family protein [Burkholderia ubonensis Bu] Length = 183 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 37/96 (38%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + V +R+R R G+SQ +L + G+T + E+G L+ + E + + Sbjct: 1 MSTEVAERLRYVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + FF + S + + + + L Sbjct: 61 AEFFTFELVESRTVVSRRDEMPNLGNDALAFHLVGA 96 >gi|160935455|ref|ZP_02082837.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC BAA-613] gi|158441813|gb|EDP19513.1| hypothetical protein CLOBOL_00351 [Clostridium bolteae ATCC BAA-613] Length = 184 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 40/91 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG++IR R ++ + + E G++ + + E+G S L+ +SE L Sbjct: 1 MVGEKIRKLRKEKKLTLKDIAEATGLSIGYISQLERGAVEPSLSSLRKVSEFLGVSPYLL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D S + + S++ ++ F + ++ Sbjct: 61 VDQSEHHPAMVKSDQRPIIKFPKSEIFYEIV 91 >gi|284009381|emb|CBA76570.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 137 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 52/117 (44%), Gaps = 1/117 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIRLRR L ++Q++LG+ +G++ + ++EK L +++ L + Sbjct: 6 IGERIRLRRKELELTQKQLGKRVGVSHVAISQWEKEETEPKGDNLLSLADALMCTAEYIL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + T I + + T L F + + + + + E+ + + E+ Sbjct: 66 RGT-TSEKPIRCDNDTYKYSRLTKREENLLEMFNALTEDEQKNYLKEITETRANLER 121 >gi|261404033|ref|YP_003240274.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280496|gb|ACX62467.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 272 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 3/111 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K I R ++QE L LG+TFQ V K+E G + L +S +L+ I Sbjct: 4 MLAKNINRYRKERRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSIDKL 63 Query: 74 FDVSPT--VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 F S T S E + T + I R +++++ Sbjct: 64 FGYSSTGKPISIYEEEYKTPEYYWGTEPNAACYQVLEMIP-PTKRVRLLDI 113 >gi|219847677|ref|YP_002462110.1| XRE family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541936|gb|ACL23674.1| transcriptional regulator, XRE family [Chloroflexus aggregans DSM 9485] Length = 181 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/120 (11%), Positives = 44/120 (36%), Gaps = 5/120 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I R G++ +++ E G+T + + E+ + + L+ +++ ++ Sbjct: 1 MSLGQKIGRLRQERGLTLQEVSEGSGLTPSFLSRLERDKVNISVANLRKLAQFFSVKMTH 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF+ + + F + L+ + S ++ Sbjct: 61 FFEGEDNQQVGQVVRPAERVRLSLDDAP---VQVFSLLPPNSDLDA--RLIEAYPGSSQQ 115 >gi|108758632|ref|YP_630926.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] gi|108462512|gb|ABF87697.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] Length = 116 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 2/88 (2%) Query: 13 INVGKRIRLRRMIL--GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+RIR R +QE+L E I+ + E+G L ++ L + Sbjct: 6 KRIGQRIRELRTQRPERWTQEELAERAQISVSFLSMIERGERVPHVETLAALANALGVSL 65 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTP 98 F + + + DF Sbjct: 66 GELFTGTEQTLAQTEDLLRPLSDFARAR 93 >gi|78060967|ref|YP_370875.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968852|gb|ABB10231.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 193 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 10/143 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 N + N +G +IR R L + + GI+ + + E+G+ + L Sbjct: 5 TENSRSANAT-AALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAG 63 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L + +F D S E+ F + F ++ +V +++ Sbjct: 64 IAHALGVTVQYFVDTPSEERSVCRGEQLRFFGFADS------ANLFARLTNVSEGRQLEA 117 Query: 122 LVRSIVSSEKKYR---TIEEECM 141 ++ + +K+ EE + Sbjct: 118 ILVRMPPGQKRSEVTTHAGEEFL 140 >gi|330718467|ref|ZP_08313067.1| XRE family DNA-binding protein [Leuconostoc fallax KCTC 3537] Length = 249 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G RI+ +R+ +QE+L L ++ V +E G N + IS++ E + Sbjct: 1 MNIGDRIKEQRLYKSWTQEQLAHFLNVSRSTVSSWEVGRNYPDLETIVAISDLFEISLDK 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + + S + + Sbjct: 61 LLREDSIMVRETSKKAKHF 79 >gi|308068399|ref|YP_003870004.1| transcriptional regulator y4dJ [Paenibacillus polymyxa E681] gi|305857678|gb|ADM69466.1| Putative HTH-type transcriptional regulator y4dJ [Paenibacillus polymyxa E681] Length = 112 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 4/87 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K V VG RIR R G+SQE LGE G F + + E+G V + Sbjct: 1 MEDK----EVLKLVGARIRALRKEKGLSQESLGEKGGFHFSYIGQIERGEKNVSLINIAK 56 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEE 88 I+ L+ + F EE Sbjct: 57 IANALDVNLIQLFAYVNEDIKVTKHEE 83 >gi|229029511|ref|ZP_04185592.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] gi|228731793|gb|EEL82694.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] Length = 181 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 1/93 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + GIT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMAGITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + T D+ + I +L Sbjct: 63 SFL-LEDTNTDDLIVRSHKRKKMIIDNLSYELL 94 >gi|220927517|ref|YP_002504426.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219997845|gb|ACL74446.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 112 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P + + +GK+IR R+ G++QE L E G+ + + E+G L Sbjct: 1 MSQKDKPTFL-VLLGKKIRQSRLHKGLTQEDLSEITGLHPSYIGQIERGEKSPSVETLID 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE 87 IS+ L++ IS+ +V S+ Sbjct: 60 ISKSLDTSISYILNVPDYKMKKELSD 85 >gi|16802848|ref|NP_464333.1| hypothetical protein lmo0806 [Listeria monocytogenes EGD-e] gi|224499672|ref|ZP_03668021.1| hypothetical protein LmonF1_08239 [Listeria monocytogenes Finland 1988] gi|224501890|ref|ZP_03670197.1| hypothetical protein LmonFR_05157 [Listeria monocytogenes FSL R2-561] gi|254830206|ref|ZP_05234861.1| hypothetical protein Lmon1_02557 [Listeria monocytogenes 10403S] gi|254899023|ref|ZP_05258947.1| hypothetical protein LmonJ_04380 [Listeria monocytogenes J0161] gi|254911489|ref|ZP_05261501.1| DNA-binding protein [Listeria monocytogenes J2818] gi|254935815|ref|ZP_05267512.1| DNA-binding protein [Listeria monocytogenes F6900] gi|255026637|ref|ZP_05298623.1| hypothetical protein LmonocytFSL_10420 [Listeria monocytogenes FSL J2-003] gi|284801136|ref|YP_003413001.1| hypothetical protein LM5578_0885 [Listeria monocytogenes 08-5578] gi|284994278|ref|YP_003416046.1| hypothetical protein LM5923_0840 [Listeria monocytogenes 08-5923] gi|16410195|emb|CAC98884.1| lmo0806 [Listeria monocytogenes EGD-e] gi|258608402|gb|EEW21010.1| DNA-binding protein [Listeria monocytogenes F6900] gi|284056698|gb|ADB67639.1| hypothetical protein LM5578_0885 [Listeria monocytogenes 08-5578] gi|284059745|gb|ADB70684.1| hypothetical protein LM5923_0840 [Listeria monocytogenes 08-5923] gi|293589432|gb|EFF97766.1| DNA-binding protein [Listeria monocytogenes J2818] Length = 180 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD I E + Sbjct: 61 FFDEEEHNQKVIYGELEH 78 >gi|293380865|ref|ZP_06626901.1| bacteriophage CI repressor protein [Lactobacillus crispatus 214-1] gi|290922538|gb|EFD99504.1| bacteriophage CI repressor protein [Lactobacillus crispatus 214-1] Length = 118 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 6/96 (6%) Query: 11 VDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +DI +G+RI+ R ++Q+ L + L ++ Q V K+EKG + RL +SE+ + Sbjct: 2 IDIQAIGQRIKSYRENAKLTQDNLAQKLNVSRQSVSKWEKGGSLPDIDRLVTMSELFDIS 61 Query: 70 ISFFFDVSPTVCSDISSEEN-----NVMDFISTPDG 100 + + E++ N DF++ Sbjct: 62 LDKLILGKDKNVQKVVLEKSPSTHLNFGDFLAKYWW 97 >gi|262402969|ref|ZP_06079529.1| predicted transcriptional regulator [Vibrio sp. RC586] gi|262350468|gb|EEY99601.1| predicted transcriptional regulator [Vibrio sp. RC586] Length = 237 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R L ++Q+++ +G++ + +E+ S L + + L + Sbjct: 6 IGERIRRVRKELKLTQQQVASSIGVSPTSLVFWERNETTPKGSNLIALCKKLRVDPLWLQ 65 Query: 75 DVSPTVCSDISSEE 88 T S + E Sbjct: 66 TGKGTQDSTAGNAE 79 >gi|227821998|ref|YP_002825969.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] gi|227340998|gb|ACP25216.1| transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 244 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 8/97 (8%) Query: 5 KKIPNPV--------DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 + P+ + ++ +G +R R LG++ + I+ + K E G Sbjct: 39 TQDPHAIRDTREKVLEVAIGHEVRAFRKKLGITVSDVAAATDISVGMLSKIENGNTSPSL 98 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 + LQ ++ L PI+ FF S + + +D Sbjct: 99 TTLQTLARALGVPITSFFRGFEEEHSAVFVKAGEGVD 135 >gi|229528221|ref|ZP_04417612.1| hypothetical protein VCG_001301 [Vibrio cholerae 12129(1)] gi|261212926|ref|ZP_05927210.1| predicted transcriptional regulator [Vibrio sp. RC341] gi|297580070|ref|ZP_06941997.1| HTH-type transcriptional regulator PrtR [Vibrio cholerae RC385] gi|229334583|gb|EEO00069.1| hypothetical protein VCG_001301 [Vibrio cholerae 12129(1)] gi|260837991|gb|EEX64668.1| predicted transcriptional regulator [Vibrio sp. RC341] gi|297535716|gb|EFH74550.1| HTH-type transcriptional regulator PrtR [Vibrio cholerae RC385] Length = 237 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 32/74 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R L ++Q+++ +G++ + +E+ S L + + L + Sbjct: 6 IGERIRRVRKELKLTQQQVASSIGVSPTSLVFWERNETTPKGSNLIALCKKLRVDPLWLQ 65 Query: 75 DVSPTVCSDISSEE 88 T S + E Sbjct: 66 TGKGTQDSTAGNAE 79 >gi|327466846|gb|EGF12364.1| XRE family transcriptional regulator [Streptococcus sanguinis SK330] Length = 194 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 3/108 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R GMSQ+ L L + Q + +E G +L ++ + + + Sbjct: 83 ERLKKLRKAAGMSQKNLALKLNTSQQNINYWENGQRNPKREKLIETADFFDVSVDYLLGN 142 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV---KVRQKIIE 121 + + + + + + + + +ID ++R+K E Sbjct: 143 TDEKKPVLETAQILFRKTVDDFNLTKEQQEQFKIDIDNFIEMRRKAFE 190 >gi|327398295|ref|YP_004339164.1| Cupin 2 barrel domain-containing protein [Hippea maritima DSM 10411] gi|327180924|gb|AEA33105.1| Cupin 2 conserved barrel domain protein [Hippea maritima DSM 10411] Length = 182 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 2/95 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG +IR R M+ L + G + + + E+ + S L+ I++ L I Sbjct: 1 MRVGSKIREIRTKKNMTLRDLSKKSGCSLGFLSQVERDLVSPTISSLRRIADALGINIIS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL--QLNR 105 F+ I + N F + + +L R Sbjct: 61 LFEEREPPVDSIVVRKTNRGKFENRRSRVKYELLR 95 >gi|313899841|ref|ZP_07833344.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312955456|gb|EFR37121.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 259 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R GMSQE+L ++ Q + K+E G L+ +S L I Sbjct: 6 NLYRIRKEKGMSQEELAALCDVSRQAISKWENGTANPDMENLKTLSRSLRVSIDELL 62 >gi|257865722|ref|ZP_05645375.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257872057|ref|ZP_05651710.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257799656|gb|EEV28708.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257806221|gb|EEV35043.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 396 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 4/103 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G+ I RR G++Q++L + ++ V K+E G + + L ++ + + Sbjct: 1 MDLPIGEEIARRRKQRGITQQELAVFMNVSKASVSKWETGQSYPDITSLPLLAAYFDCSV 60 Query: 71 SFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +SP I + + + L L + F + Sbjct: 61 DELLILDSQLSPKEIQRIYQLLKDAFQTKTPSEVLALAQSFTK 103 >gi|288573116|ref|ZP_06391473.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568857|gb|EFC90414.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 234 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 26/68 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R G++Q +L G+ V + E + + ++ VL + + Sbjct: 4 GERLRRVRKDQGLTQTELARLSGVKQNTVSQVENDRIGLSIETWESLASVLGCSVGYLVS 63 Query: 76 VSPTVCSD 83 S Sbjct: 64 GEGDRKSS 71 >gi|259908398|ref|YP_002648754.1| transcriptional repressor DicA [Erwinia pyrifoliae Ep1/96] gi|224964020|emb|CAX55526.1| HTH-type transcriptional regulator DicA [Erwinia pyrifoliae Ep1/96] gi|283478343|emb|CAY74259.1| HTH-type transcriptional regulator dicA; Repressor protein of division inhibition gene dicA [Erwinia pyrifoliae DSM 12163] Length = 133 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 8/131 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G+RIR RR + +Q L + L I+ V ++E+ + L ++++L+ + Sbjct: 3 NLTIGERIRNRRKEMKFTQRSLAKALKISHVSVSQWERDDSEPTGKNLFALTKILQCTPT 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + ++ +D +L FI I D + EL+ + + + Sbjct: 63 WVLFGDQNQSPQEPTDTPLELD----DKQRELIGLFIAITDSEQ----DELLNELRARVE 114 Query: 132 KYRTIEEECMV 142 + EE + Sbjct: 115 NNKIRLEELLK 125 >gi|210624086|ref|ZP_03294186.1| hypothetical protein CLOHIR_02142 [Clostridium hiranonis DSM 13275] gi|210153219|gb|EEA84225.1| hypothetical protein CLOHIR_02142 [Clostridium hiranonis DSM 13275] Length = 158 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 34/77 (44%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +K + ++G+ ++ R M+QE + E +G++ Q V K+E GV+ S L Sbjct: 82 SEVRKEKTIIRKSLGEVLKSHREKNHMTQEFVAEAIGVSRQAVSKWENGVSDPSTSNLIA 141 Query: 62 ISEVLESPISFFFDVSP 78 ++++ Sbjct: 142 LAKLFNMSPEELLQEVE 158 >gi|254853777|ref|ZP_05243125.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|300765112|ref|ZP_07075099.1| hypothetical protein LMHG_11829 [Listeria monocytogenes FSL N1-017] gi|258607157|gb|EEW19765.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|300514237|gb|EFK41297.1| hypothetical protein LMHG_11829 [Listeria monocytogenes FSL N1-017] Length = 180 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD I E + Sbjct: 61 FFDEEEHNQKVIYGELEH 78 >gi|160933518|ref|ZP_02080906.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753] gi|156867395|gb|EDO60767.1| hypothetical protein CLOLEP_02364 [Clostridium leptum DSM 753] Length = 169 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 1/93 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE+L L + Q + K+E G++ + L ISE LE+P+S Sbjct: 4 ENIKAIRKSKGLSQEELAVKLNVVRQTISKWENGLSVPDSDMLISISEALETPVSVLL-G 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 P + + L + + Sbjct: 63 EPVAEPEADDLKAVCEKLEIINLQLAQRKAARR 95 >gi|160878258|ref|YP_001557226.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426924|gb|ABX40487.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 163 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I RR + G++Q++L + LG+T + + K+E G + L ++E+L ++ Sbjct: 6 IGKFIADRRKVRGLTQQQLADDLGLTNKAISKWETGQGMPDITTLPILAEMLGITVNELL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 D + + I Sbjct: 66 KGELNQSIDKKENGIETNYSVHKSVYWFKAMACLSI 101 >gi|325522655|gb|EGD01175.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 193 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 11/146 (7%) Query: 1 MVGNKKIPNPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 MV + P D +G +IR R L + ++ GI+ + + E+G+ + Sbjct: 1 MVPPTENPRSADAAAALGSKIRALRQRLKRTLDETATVAGISKPFLSQVERGLASPSLTS 60 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 L I++ L + +F D S E+ F + F ++ +V ++ Sbjct: 61 LAGIAQALGVTVQYFVDTPSEERSVCRGEQLRFFGFADS------ANLFARLTNVTEGRQ 114 Query: 119 IIELVRSIVSSEKKYR---TIEEECM 141 + ++ + +K+ EE + Sbjct: 115 LEAILVRMPPGQKRSEVTTHAGEEFL 140 >gi|325662288|ref|ZP_08150903.1| hypothetical protein HMPREF0490_01641 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086094|ref|ZP_08335177.1| hypothetical protein HMPREF0987_01480 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471540|gb|EGC74761.1| hypothetical protein HMPREF0490_01641 [Lachnospiraceae bacterium 4_1_37FAA] gi|330407017|gb|EGG86522.1| hypothetical protein HMPREF0987_01480 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 192 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 56/130 (43%), Gaps = 4/130 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R + + L E G++ + ++E+G+ + L+ I++VLE +S FF Sbjct: 7 IGFRIKELRTEKKYTLKYLSEQTGLSIGFLSQFERGLTSIAIDSLEKIAQVLEVELSSFF 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK-- 132 D+S + + + ++ + + +++E++ + ++ Sbjct: 67 DLSSPQETKYVVRSYEKETTLVNSEIIEYALTDH-LTSFDLLPRLVEIMPPLPEEKETLE 125 Query: 133 -YRTIEEECM 141 Y EE + Sbjct: 126 LYNHTGEEFI 135 >gi|315281473|ref|ZP_07870091.1| DNA-binding protein [Listeria marthii FSL S4-120] gi|313614873|gb|EFR88399.1| DNA-binding protein [Listeria marthii FSL S4-120] Length = 180 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD I E + Sbjct: 61 FFDEEEHNQKVIYGELEH 78 >gi|312890063|ref|ZP_07749607.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311297595|gb|EFQ74720.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 135 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 63/140 (45%), Gaps = 7/140 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++K P + ++G++I R + G+ QE L LG++ + V + E+ + L+ Sbjct: 1 MTTSEK---PTNQHIGRKISRIRELRGIKQEDLATQLGVSQKTVSRMEQSEV-IEDDVLE 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKI 119 I+++L + S + + N + S+ G F ID V++ ++ Sbjct: 57 SIAKILGVTTDAIKNFSEEAVINYFNTFNQSVS--SSNFGHNNTCTFNPIDKLVELFEEN 114 Query: 120 IELVRSIVSSEKKYRTIEEE 139 +L ++ +EK+ + + Sbjct: 115 KKLYERLLQAEKEKIELLNK 134 >gi|241896164|ref|ZP_04783460.1| transcriptional regulator [Weissella paramesenteroides ATCC 33313] gi|241870583|gb|EER74334.1| transcriptional regulator [Weissella paramesenteroides ATCC 33313] Length = 140 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I+ RR LG+SQE+ + L I+ Q + +E L IS + + + Sbjct: 11 MELSNKIKKRRKELGISQEEAAKKLYISRQTLSNWENDKTLPDIDHLIDISNLYDLSLDE 70 Query: 73 FFDVS 77 Sbjct: 71 LIKED 75 >gi|158319286|ref|YP_001511793.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158139485|gb|ABW17797.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 428 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 1/80 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +IR R MSQ++L + + E ++ +I+ L++PI +F Sbjct: 4 YVGYKIRALRKKKQMSQQELCGDFM-NRSILSRIENNRMEPSLHQIIYIANKLDTPIHYF 62 Query: 74 FDVSPTVCSDISSEENNVMD 93 F + S ++ + Sbjct: 63 FYDVDYTENIPSDVQSVTHE 82 >gi|134295176|ref|YP_001118911.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134138333|gb|ABO54076.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis G4] Length = 221 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 3/111 (2%) Query: 1 MVGNKKIPNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M +P P ++ + +R+R R + G + + L G++ + E+ A Sbjct: 1 MQEATTLPAPDAGINERIARRVRDLRTLRGYTLDTLAARSGVSRSMISLIERASASPTAV 60 Query: 58 RLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 L ++ L ++ F + P L R Sbjct: 61 VLDKLAAGLGVSLAALFGGERDDAPAQPLVKRAQQAEWRDPASGYLRRNLS 111 >gi|319650747|ref|ZP_08004886.1| hypothetical protein HMPREF1013_01491 [Bacillus sp. 2_A_57_CT2] gi|317397604|gb|EFV78303.1| hypothetical protein HMPREF1013_01491 [Bacillus sp. 2_A_57_CT2] Length = 196 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 6/90 (6%) Query: 7 IPNPVDI------NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + N ++ +G +IR +R L ++ +++ E +G++ V + E+G + L Sbjct: 1 MINDINQSELPVEIIGGKIRSKRKTLQLTVDEVAERIGLSQSMVSQIERGKAKPSLDTLW 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN 90 +S + + P+SFFF+ +S E Sbjct: 61 KLSILFDVPLSFFFEGIEKQSVIVSRREEQ 90 >gi|310644824|ref|YP_003949583.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309249775|gb|ADO59342.1| Transcriptional regulator [Paenibacillus polymyxa SC2] Length = 114 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G +QE+L E G+ + + E+G + L+ I L+ P F Sbjct: 7 VGNRIRELRKAKGWTQEQLAEAAGLHYSYIGGVERGDRNISLETLEKIILALKVPPFELF 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 T D N +M I++ + +L Sbjct: 67 QFDETT--DRKQIINELMLLINSRETTEL 93 >gi|268320250|ref|YP_003293906.1| hypothetical protein FI9785_1788 [Lactobacillus johnsonii FI9785] gi|262398625|emb|CAX67639.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus johnsonii FI9785] Length = 161 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R ++QE++ + L +T Q + +E N + I++ + Sbjct: 5 EQIKRLRKENNLTQEEMAKKLNVTRQAISNWENNRNLPDFEMIILIAKTFGVSLDELILG 64 Query: 77 SP 78 Sbjct: 65 DK 66 >gi|261325274|ref|ZP_05964471.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261301254|gb|EEY04751.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 472 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQIV 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 65 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 116 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 117 HQAYRRNSEQL 127 >gi|257062849|ref|YP_003142521.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256790502|gb|ACV21172.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 459 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 36/92 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ V +R+ R G+SQE+L LG++ Q V K+E+ + L ++++ + Sbjct: 1 MNYEVAERLAELRRAKGLSQEELAHELGLSRQAVSKWERAESSPDTDNLIALAKLYGMTL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 S ++ + + Sbjct: 61 DELVHGPAEAVGHADSGDDADAPDGADESLAE 92 >gi|107023923|ref|YP_622250.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691009|ref|YP_836632.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170734344|ref|YP_001766291.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105894112|gb|ABF77277.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116649098|gb|ABK09739.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] gi|169817586|gb|ACA92169.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 183 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 37/96 (38%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + V +R+R R G+SQ +L + G+T + E+G L+ + E + + Sbjct: 1 MSTEVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + FF + S + + + + L Sbjct: 61 AEFFTFELVESRAVVSRRDEMPNLGNESLAFHLVGA 96 >gi|313113313|ref|ZP_07798912.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624366|gb|EFQ07722.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 120 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 16/121 (13%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN I +GK+I+ R + M+Q++L ++ + + E G L I VL Sbjct: 3 MPNADAIALGKQIKAVRKAMKMTQDQLALKSNVSVKYIANIENGKQNPSFDILSAILHVL 62 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + N + + +L ++ ++R+ +++ RS+ Sbjct: 63 PLSLD---------------SVINPNLSEAERECRELESIYLACP-PEMRKTLLDATRSL 106 Query: 127 V 127 Sbjct: 107 A 107 >gi|300172749|ref|YP_003771914.1| HTH-type transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299887127|emb|CBL91095.1| HTH-type transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] Length = 140 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I++ R +SQE++ + L ++ Q V +E+G S + +SE+ + + Sbjct: 1 MLIGEKIKIIREDRKISQEQMAKSLNVSGQAVSNWERGKGHPDISNIIRLSEIYDISLDE 60 Query: 73 FFDVSPTVCSDISS 86 + Sbjct: 61 LIREDKNYKEVLLE 74 >gi|229082949|ref|ZP_04215370.1| transcriptional regulator [Bacillus cereus Rock4-2] gi|228700349|gb|EEL52914.1| transcriptional regulator [Bacillus cereus Rock4-2] Length = 186 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R MSQEKL E + ++ Q + +E N L +S + + Sbjct: 1 MNIGRQIQYLRKRDNMSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDD 60 Query: 73 FFDVS 77 Sbjct: 61 LVKGD 65 >gi|226325593|ref|ZP_03801111.1| hypothetical protein COPCOM_03406 [Coprococcus comes ATCC 27758] gi|225205717|gb|EEG88071.1| hypothetical protein COPCOM_03406 [Coprococcus comes ATCC 27758] Length = 336 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE+L LG++ Q V K+E R+ +SE+ + Sbjct: 1 MILADKITEERKKNGWSQEELANQLGVSRQAVSKWESAGAVPDLQRILQMSELFCVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + E ++ F Sbjct: 61 LLKDEMKAENITYQESTERYAEPLKKVTMENANEF 95 >gi|224476213|ref|YP_002633819.1| putative DNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420820|emb|CAL27634.1| putative DNA binding protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 179 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 36/81 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+++R R I ++QE+L E ++ + + E G + HI EVL + Sbjct: 1 MNIGQKLRNLRKIKDLTQEELAERTDLSKGYISQIESGQSSPSMESFLHILEVLGTSPEL 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF P E + D Sbjct: 61 FFKEKPKEKVLYPKAEQAIYD 81 >gi|324327531|gb|ADY22791.1| helix-turn-helix domain-containing protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 262 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQE L E L T Q V K+E G +L I V E + + Sbjct: 4 GEKLFKLRKGKGLSQEALAEKLNTTRQAVSKWENGQGFPETEKLIMIGNVFEVSLDYLLK 63 Query: 76 VSPTVCSDISS 86 + ++ Sbjct: 64 ETAEKSNENMD 74 >gi|118593092|ref|ZP_01550479.1| Transcriptional repressor [Stappia aggregata IAM 12614] gi|118434399|gb|EAV41053.1| Transcriptional repressor [Stappia aggregata IAM 12614] Length = 313 Score = 50.6 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R + SQ +L + L T Q V ++E G G L+ ++ + + + Sbjct: 2 KIKELREKMNWSQGELAKLLSRTQQTVSRWESGATEPGIEALRDMAMIFGCSVDDILGLE 61 Query: 78 PTVCSDISSEENNVMDFISTPD 99 S+ + + D ++ Sbjct: 62 GISPSNKLTVSISHADALAEEF 83 >gi|307727212|ref|YP_003910425.1| Cupin 2 conserved barrel domain-containing protein [Burkholderia sp. CCGE1003] gi|307587737|gb|ADN61134.1| Cupin 2 conserved barrel domain protein [Burkholderia sp. CCGE1003] Length = 190 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 51/132 (38%), Gaps = 9/132 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG +IR R L + ++ GI+ + + E+G+ + L I+ L + + Sbjct: 12 LEVGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQY 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F D S ++ F + F ++ +V +++ ++ + +K+ Sbjct: 72 FVDTPSEERSVSRGDQLKFFGFADS------ANLFARLTNVAGGRQLEAILVKMPPGQKR 125 Query: 133 YR---TIEEECM 141 EE M Sbjct: 126 SEVTTHAGEEFM 137 >gi|260222943|emb|CBA33015.1| hypothetical protein Csp_B16920 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 100 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Query: 7 IPNPVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 N ++ VG+RI+ R +SQE L E GI + + E G L +++ Sbjct: 28 TKNKINYKRIVGQRIKGLRQEAELSQEILSERCGIYRTYLSRIESGSANPTLLVLVALAD 87 Query: 65 VLESPISFFFDVS 77 L + Sbjct: 88 SLGVQPAELLSND 100 >gi|225377083|ref|ZP_03754304.1| hypothetical protein ROSEINA2194_02728 [Roseburia inulinivorans DSM 16841] gi|225210988|gb|EEG93342.1| hypothetical protein ROSEINA2194_02728 [Roseburia inulinivorans DSM 16841] Length = 240 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 39/90 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKR++ R+ G++Q++L + +T + + E+ N L I + L + + Sbjct: 62 MDIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNTPSIGTLLDIIQCLGTTPAE 121 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 FF +E+ + ++ Sbjct: 122 FFTDEEPEQIVFKNEDFFTKVNEDKHNIIE 151 >gi|17547851|ref|NP_521253.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430156|emb|CAD16841.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 209 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 28/88 (31%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R G + + L G++ + E+G A L ++ L + Sbjct: 16 INERIARRVRDLRAARGYTLDALAARCGVSRSMISLIERGAASPTAVVLDKLAAGLGVSL 75 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTP 98 + F P Sbjct: 76 ASLFGGEREGVPAQPLMRRAQQAQWRDP 103 >gi|328471556|gb|EGF42436.1| DNA-binding protein [Listeria monocytogenes 220] Length = 125 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 51/128 (39%), Gaps = 9/128 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R ++Q++L +G T + KYE +R L ++E+L + F Sbjct: 1 MEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDF 60 Query: 73 FFDV-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 D + + + + + L+L + + + + +++ I + + Sbjct: 61 LLDDVAGLREKNSVNAFPLIGNPELEKWYLELPYTYSEDE--------LLMLKRIADAIE 112 Query: 132 KYRTIEEE 139 +E+ Sbjct: 113 NKNNFKEK 120 >gi|300172714|ref|YP_003771879.1| transcriptional repressor [Leuconostoc gasicomitatum LMG 18811] gi|299887092|emb|CBL91060.1| Transcriptional repressor [Leuconostoc gasicomitatum LMG 18811] Length = 126 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 2/113 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFFF 74 G +++ R I G + + I+ + + E G L I+ L Sbjct: 8 GSQLKKIREIKGFTVRQTAMQGHISPAYLSQIENGNKNIPKVETLYKIASGLRISNDDIL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI-QIDDVKVRQKIIELVRSI 126 +++ + + + +D + + F + K RQ I+ +++++ Sbjct: 68 NLAGITKNKSAETPSAHIDLGEQLENTDILLSFEGKDLSPKYRQAILSVLKTL 120 >gi|260175210|ref|ZP_05761622.1| hypothetical protein BacD2_25373 [Bacteroides sp. D2] gi|315923442|ref|ZP_07919682.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697317|gb|EFS34152.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 149 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G+ IR R+ M+QE L E + ++ V KYEK + + LQ + L P + Sbjct: 11 VHHGRNIRRTRIEKDMNQEGLSELVHLSQPAVSKYEK-MRVIDDEMLQRFARALNVPFDY 69 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG--LQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + + N + + + + ++++ KI EL ++ + Sbjct: 70 LKTLEEDAQTVVFENITNNGNAATNANIGFVDEVGEDNRVNNFNPIDKITELYERLLKEK 129 Query: 131 KKYRTIEEECM 141 + E + Sbjct: 130 DEKYAALERRL 140 >gi|258543250|ref|YP_003188683.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|329114057|ref|ZP_08242821.1| Hypothetical protein APO_0832 [Acetobacter pomorum DM001] gi|256634328|dbj|BAI00304.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256637386|dbj|BAI03355.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03] gi|256640438|dbj|BAI06400.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07] gi|256643495|dbj|BAI09450.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22] gi|256646550|dbj|BAI12498.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26] gi|256649603|dbj|BAI15544.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32] gi|256652591|dbj|BAI18525.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655647|dbj|BAI21574.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12] gi|326696596|gb|EGE48273.1| Hypothetical protein APO_0832 [Acetobacter pomorum DM001] Length = 122 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 49/121 (40%), Gaps = 12/121 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G+RI++ R G++Q+++ + LG++ + +E G + ++ + Sbjct: 12 IDLGQRIKILRKSAGLTQQQVADALGVSRPAIAFWETGREGSARKHIPKLAALFNVDPEI 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV--RQKIIELVRSIVSSE 130 F ++ + TPD + R + +D + QK +E + E Sbjct: 72 FLTGY----------VQEDIELVITPDEHDVIRLYRMLDPSRKVSAQKWLERQARMARQE 121 Query: 131 K 131 Sbjct: 122 D 122 >gi|237815604|ref|ZP_04594601.1| Cro/CI family transcriptional regulator [Brucella abortus str. 2308 A] gi|260754928|ref|ZP_05867276.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260761971|ref|ZP_05874314.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|237788902|gb|EEP63113.1| Cro/CI family transcriptional regulator [Brucella abortus str. 2308 A] gi|260672403|gb|EEX59224.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675036|gb|EEX61857.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] Length = 472 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 5 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQSENNQRPVSAAVLLALAENYQID 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 65 IGAISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 116 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 117 HQAYRRNSEQL 127 >gi|282601042|ref|ZP_05980519.2| DNA-binding protein [Subdoligranulum variabile DSM 15176] gi|282570426|gb|EFB75961.1| DNA-binding protein [Subdoligranulum variabile DSM 15176] Length = 269 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 38/68 (55%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ + + ++ R G+SQ++L L + Q + K+E+G++ + L ISEVLE+P Sbjct: 97 PLFSMLSQNLKTIRKSKGLSQQELAVKLNVVRQTISKWEQGLSVPDSEMLISISEVLETP 156 Query: 70 ISFFFDVS 77 +S + Sbjct: 157 VSILLGEN 164 >gi|225410097|ref|ZP_03761286.1| hypothetical protein CLOSTASPAR_05318 [Clostridium asparagiforme DSM 15981] gi|225042384|gb|EEG52630.1| hypothetical protein CLOSTASPAR_05318 [Clostridium asparagiforme DSM 15981] Length = 228 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 36/93 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + +R R+ GM+QE++ +G+T Q + YE G R L + EV + + Sbjct: 1 MSINQNLRQLRLDCGMTQEQVAAKIGLTRQALSSYESGRTRPDIEMLMRLCEVYGTDLDA 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + + + L R Sbjct: 61 ILYGTSRTLKAVRRMKTCAAVLFILLTALTFVR 93 >gi|221066672|ref|ZP_03542777.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220711695|gb|EED67063.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 97 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 3/97 (3%) Query: 1 MVGNK---KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 MV K K P + G+ +R RR G SQE G+ GI + E+G + + Sbjct: 1 MVRAKESLKNKVPELVRFGEAVRARRKACGYSQEAFGDACGIDRSYIGGIERGEHNLALI 60 Query: 58 RLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDF 94 + I L S FF+ +E + Sbjct: 61 NILKIIATLNLQPSEFFEALDGPTPAALAERKSKSKP 97 >gi|251798465|ref|YP_003013196.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546091|gb|ACT03110.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 112 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 32/77 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + N+G+ IR R G SQE+L I + + E+G L I+ L+ Sbjct: 2 NEISRNIGENIRAIRKQKGFSQEQLALRAEINGSYMGQVERGEKSPTVDVLSKIAHALQC 61 Query: 69 PISFFFDVSPTVCSDIS 85 P+ + T D + Sbjct: 62 PLEQLVHMPGTPHEDST 78 >gi|167840807|ref|ZP_02467491.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 179 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 51/132 (38%), Gaps = 9/132 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R L + ++ GI+ + + E+G+ + L I+ L + + Sbjct: 1 MALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F + S E+ F + F ++ +V +++ ++ + +K+ Sbjct: 61 FVETPSEERSVCRGEQLRFFSFADS------ANLFARLTNVPEGRQLEAILVRMPPGQKR 114 Query: 133 YR---TIEEECM 141 EE + Sbjct: 115 SEVTTHAGEEFL 126 >gi|89054805|ref|YP_510256.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88864354|gb|ABD55231.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 208 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 2/82 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G + +P PVD+ R+R R + E+ G+ + K E G L+ Sbjct: 17 SGEEAVPVPVDLA--ARVRELRKARSWTLEQAAGQAGLARSTLSKIENGQMSPTYDALKK 74 Query: 62 ISEVLESPISFFFDVSPTVCSD 83 ++ L + F S Sbjct: 75 LANGLGISVPQLFTPSVAPQGG 96 >gi|84515424|ref|ZP_01002786.1| transcriptional regulator, putative [Loktanella vestfoldensis SKA53] gi|84510707|gb|EAQ07162.1| transcriptional regulator, putative [Loktanella vestfoldensis SKA53] Length = 456 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 46/132 (34%), Gaps = 8/132 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ G RIR +RM +G+ Q L +GI+ + E R+G L ++ L Sbjct: 27 IERMTGTRIREKRMDIGLRQASLASAVGISPSYLNLIEHNRRRIGGKLLTDLARALGVDP 86 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIEL-VRSIVS 128 S + D + ++ +L F +I L R + Sbjct: 87 SHLAGGADRDLLDQLHSAATLAGDMAEIARAEELAARFPGWA------GLIALQARRLAV 140 Query: 129 SEKKYRTIEEEC 140 +++ + + Sbjct: 141 LDERIGALTDRM 152 >gi|332798162|ref|YP_004459661.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695897|gb|AEE90354.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 123 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 48/113 (42%), Gaps = 1/113 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRIR R LG+S+E+ E +G++ + + E+G ++ L ++ L + + Sbjct: 7 AIGKRIREEREKLGLSREEFAEIIGLSDYYIGQLERGERQMSMPTLIKVANCLHVSLDYL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + + NN ++N + + +L+++I Sbjct: 67 VLGRLSFDAAYICDPNNNTYETWDEGFYEINNLLKKC-SPHEIELFKKLIKTI 118 >gi|226223363|ref|YP_002757470.1| transcription regulator [Listeria monocytogenes Clip81459] gi|254823987|ref|ZP_05228988.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|225875825|emb|CAS04528.1| Putative transcription regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293593215|gb|EFG00976.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] Length = 169 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLLGE 63 >gi|167770416|ref|ZP_02442469.1| hypothetical protein ANACOL_01759 [Anaerotruncus colihominis DSM 17241] gi|167667423|gb|EDS11553.1| hypothetical protein ANACOL_01759 [Anaerotruncus colihominis DSM 17241] Length = 112 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 10/117 (8%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R G+SQ+ + + LGIT Q YE G + + L ++ + Sbjct: 3 NLKALRESKGVSQQTVADYLGITRQAYGNYETGKRQADYAALLRLAAFFGVSVDALLQPD 62 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 P + + ++ L + +QK++E+ + ++K + Sbjct: 63 PPAQTKELAFDDFTYAMYEEGKQL----------TEENKQKLLEMAKFFKQQQEKEK 109 >gi|331092206|ref|ZP_08341036.1| hypothetical protein HMPREF9477_01679 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401978|gb|EGG81552.1| hypothetical protein HMPREF9477_01679 [Lachnospiraceae bacterium 2_1_46FAA] Length = 347 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 3/105 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR R M+QE++ E LG+T V K+E G + S L I+ +L Sbjct: 1 MKIGEVIRKYRKEKQMTQEEMAEYLGVTTPAVNKWENGNSMPDISLLAPIARLLGISTDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + E + ++ ++ + + + ++R+ Sbjct: 61 LLSYQNELTD---KEISRKIELLAEKMKTESYEDVFRWTEQQIRE 102 >gi|331269964|ref|YP_004396456.1| helix-turn-helix domain-containing protein [Clostridium botulinum BKT015925] gi|329126514|gb|AEB76459.1| helix-turn-helix domain protein [Clostridium botulinum BKT015925] Length = 184 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 41/101 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R MS + + + G++ + + E+G + S L I+ L+ S F Sbjct: 8 IGSNLKTIRNQKNMSLDNVSKLTGVSKAMLGQIERGESNPTVSTLWKIATGLKVSFSSFI 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 D S IS ++ + + S L F + +V Sbjct: 68 DDSNENLKIISQDKIDPIIEDSNRMKLYPIFPFDGKKNFEV 108 >gi|323358883|ref|YP_004225279.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323275254|dbj|BAJ75399.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 474 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 3/127 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R G++ + L +G Q+ E G + LQ I+ LE + Sbjct: 6 IGRRIRQLRTARGLTLDDLATAVGRAPSQMSMIENGRREAKLTLLQAIARALECKLDQIL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN--RYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D P T L + R + D + + I ++ Sbjct: 66 DAEPLDARSTLELSVERAMRGQTFQALGIAPFRVGRAVPDEALAAMLALQAE-IERLREE 124 Query: 133 YRTIEEE 139 EE Sbjct: 125 RSATPEE 131 >gi|308186781|ref|YP_003930912.1| hypothetical protein Pvag_1273 [Pantoea vagans C9-1] gi|308057291|gb|ADO09463.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 185 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 11/131 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ +R R G S E G++ + + E+G + + L I+ P SFF Sbjct: 7 HLSGALRQLRQANGWSLTLTAERTGVSKAMLGQIERGESSPTVATLWKIATGFNVPFSFF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D S + S + +S L D ++R ++ + +V+ + + Sbjct: 67 IDGS-ALPSGTLPGFSQPNADMSVRSVLPY--------DPQLRFDLLAV--ELVAGAQSH 115 Query: 134 RTIEEECMVEQ 144 + E VEQ Sbjct: 116 SSPHEAGCVEQ 126 >gi|299536270|ref|ZP_07049583.1| hypothetical protein BFZC1_09630 [Lysinibacillus fusiformis ZC1] gi|298728256|gb|EFI68818.1| hypothetical protein BFZC1_09630 [Lysinibacillus fusiformis ZC1] Length = 182 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG +I+ R MSQ+ L + +T + K E G L I+E+ + P+++ Sbjct: 4 LEVGVKIKQMRKKNKMSQDDLASQINLTKSHISKIENGKATPSLVTLSKIAEIFDVPMAW 63 Query: 73 F 73 F Sbjct: 64 F 64 >gi|294497044|ref|YP_003560744.1| transcriptional regulator [Bacillus megaterium QM B1551] gi|294346981|gb|ADE67310.1| transcriptional regulator [Bacillus megaterium QM B1551] Length = 180 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 39/86 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ G++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGKKIKNLRLKKGLTQEELGERTDLSKGYISQLERDLSSPSLETFFSILEVLGCEPKE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 FF++ V + EE+ Sbjct: 61 FFEIDTHVQKVVYREEDYTSYCEDEK 86 >gi|297587718|ref|ZP_06946362.1| DNA-binding protein [Finegoldia magna ATCC 53516] gi|297574407|gb|EFH93127.1| DNA-binding protein [Finegoldia magna ATCC 53516] Length = 172 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 35/72 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE+L + + Q V K+E+G++ + L +SE+L + +S Sbjct: 4 ENIKSLRKSNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVLLGE 63 Query: 77 SPTVCSDISSEE 88 + ++ Sbjct: 64 NVEETQQTELDK 75 >gi|227510766|ref|ZP_03940815.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189768|gb|EEI69835.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 245 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 36/75 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R RR L ++Q++L + L +T Q + ++E ++ L ++SE L P+ Sbjct: 7 LRKRRKELHLTQQQLADKLHVTRQTLSRWENNLSYPNLDTLVNLSEFLAVPLDILLKGDG 66 Query: 79 TVCSDISSEENNVMD 93 + + S++ D Sbjct: 67 NLMVNKISQDVRDKD 81 >gi|255305198|ref|ZP_05349370.1| putative phage repressor [Clostridium difficile ATCC 43255] Length = 121 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 53/120 (44%), Gaps = 1/120 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR++L R L +Q++LGE L I+ + + YE L ++++ + + Sbjct: 3 GKRLKLLRKELNYTQKELGEKLNISGRIIGYYESEERFPDKEILSKLADLFNVSVDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + ++ S+E + + D + R ++ ++K++++ + + E + Sbjct: 63 RTNIRNAEHSAELELIEKLNFSDDIKEALRMISEL-SPASQEKMMKIAKVFLEEEMDKKK 121 >gi|167761292|ref|ZP_02433419.1| hypothetical protein CLOSCI_03697 [Clostridium scindens ATCC 35704] gi|167660958|gb|EDS05088.1| hypothetical protein CLOSCI_03697 [Clostridium scindens ATCC 35704] Length = 134 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 39/123 (31%), Gaps = 16/123 (13%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN I + +R R ++Q L L I+ Q YE L H++ Sbjct: 1 MPN---IQLANNLRYLRKQHNLTQTTLSNMLNISRQAYSNYETSKRTPDLDSLLHLAGFY 57 Query: 67 ESPISFFFDV-------------SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 ++ T+ +++++ T + + + F + + Sbjct: 58 HVSLNDLVLGSLKDKHVTTSGISEDTIPYALATDKKTGNSIYLTDEEVDMILNFRTLSNE 117 Query: 114 KVR 116 + Sbjct: 118 NKQ 120 >gi|116872182|ref|YP_848963.1| transcription regulator, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741060|emb|CAK20180.1| transcription regulator, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 180 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD I E + Sbjct: 61 FFDEEEHNQKVIYGELEH 78 >gi|37524551|ref|NP_927895.1| hypothetical protein plu0545 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525105|ref|NP_928449.1| hypothetical protein plu1137 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525114|ref|NP_928458.1| hypothetical protein plu1146 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783975|emb|CAE12840.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784531|emb|CAE13431.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784540|emb|CAE13440.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 111 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI R G++Q +L + L ++ Q VQ +E G R+ S L I+++L + Sbjct: 2 MTLGQRISALRKHAGLTQAQLAQALNVSQQAVQSWEAGRRRIQISVLPEIAKLLSVSLEE 61 Query: 73 FFDVSPTVCS 82 F Sbjct: 62 LFGEESDTIP 71 >gi|322378177|ref|ZP_08052662.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] gi|321280907|gb|EFX57922.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] Length = 151 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R+ G SQE+L E +GI +E G ++ +L+ I++ + + F Sbjct: 92 RLKELRLQHGFSQEELAEQIGIKQNSYSDWEHGKSKPNYEKLEKIADFFGVSLDWLF 148 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 28/60 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G+ Q+++ E L + K+E G ++ +L ++ + + I + Sbjct: 6 EKLKNLRKKRGLIQQEVAELLNVERVAYTKWENGKSKPNYEKLSMLACIFDVSIDYLLGD 65 >gi|322388682|ref|ZP_08062281.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140471|gb|EFX35977.1| hypothetical transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 228 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 56/126 (44%), Gaps = 28/126 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L M+Q+ + + LG+++Q +E+GV + +++ + +L+ +F + Sbjct: 5 EKLKARRKELKMTQKDIADQLGVSYQAYSAWERGVKQPSREKVKLLEHILKVSKGYFTE- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE--KKYR 134 L++ R + + D + + + VRS+V E K Sbjct: 64 ------------------------LEIVRLYNTLSDED-KDQALNYVRSLVQKEKCKNVV 98 Query: 135 TIEEEC 140 +I E+ Sbjct: 99 SISEKL 104 >gi|317488245|ref|ZP_07946813.1| hypothetical protein HMPREF1023_00511 [Eggerthella sp. 1_3_56FAA] gi|316912657|gb|EFV34198.1| hypothetical protein HMPREF1023_00511 [Eggerthella sp. 1_3_56FAA] Length = 197 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R G++Q +L + LG+T + V K+E+G L +SE L +P+ D Sbjct: 7 GTLIRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDIELLPGLSERLGTPVETLLD 66 Query: 76 V 76 Sbjct: 67 G 67 >gi|229553274|ref|ZP_04441999.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258540114|ref|YP_003174613.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|229313360|gb|EEN79333.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257151790|emb|CAR90762.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 346 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 52/107 (48%), Gaps = 3/107 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++ + IR +R+ G++QE L + +G+T V K+EKG++ + L ++ L + + Sbjct: 2 IIMHLNQIIRTKRLAAGLTQEALAQKVGVTSPAVSKWEKGISYPDITLLPILARNLNTDV 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + D S + + + DG + + + D ++R+ Sbjct: 62 NTLLDFSADLDPAALRRFYTKLTATAQKDGW---KAAVALVDEELRE 105 >gi|257791038|ref|YP_003181644.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257474935|gb|ACV55255.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 197 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R G++Q +L + LG+T + V K+E+G L +SE L +P+ D Sbjct: 7 GTLIRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDIELLPGLSERLGTPVETLLD 66 Query: 76 V 76 Sbjct: 67 G 67 >gi|187778278|ref|ZP_02994751.1| hypothetical protein CLOSPO_01870 [Clostridium sporogenes ATCC 15579] gi|187771903|gb|EDU35705.1| hypothetical protein CLOSPO_01870 [Clostridium sporogenes ATCC 15579] Length = 180 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G +I+ R ++QE+LG+ +G+T V YE + L I++ F Sbjct: 34 ILLGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIADFFCVSTDF 93 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + + + S + N F ++ Sbjct: 94 LLNTEEKLDMALDSAKKIHDMVKKGLQESDCNYRFNNAEEA 134 >gi|89896340|ref|YP_519827.1| hypothetical protein DSY3594 [Desulfitobacterium hafniense Y51] gi|89335788|dbj|BAE85383.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 201 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I R G++Q+++ + L I+ + + K+E+G+ + +S VL + I Sbjct: 9 VGRLILQLRKEKGLTQQQVADMLNISNKTISKWERGLGCPDVTLWSGLSAVLGADIQKML 68 Query: 75 DVSPTVCSDISSEEN 89 + S + + Sbjct: 69 EGKLDPNSPDVGKID 83 >gi|219667836|ref|YP_002458271.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538096|gb|ACL19835.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 198 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I R G++Q+++ + L I+ + + K+E+G+ + +S VL + I Sbjct: 6 VGRLILQLRKEKGLTQQQVADMLNISNKTISKWERGLGCPDVTLWSGLSAVLGADIQKML 65 Query: 75 DVSPTVCSDISSEEN 89 + S + + Sbjct: 66 EGKLDPNSPDVGKID 80 >gi|332363975|gb|EGJ41754.1| XRE family transcriptional regulator [Streptococcus sanguinis SK355] Length = 225 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 15/111 (13%), Positives = 49/111 (44%), Gaps = 9/111 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + ++ P ++++ ++ + + + + + + Sbjct: 65 ---------TSALYTYPLLTPPHKKEVDKLASRLLERQRKVSSLTAYKVLS 106 >gi|317132933|ref|YP_004092247.1| transcriptional regulator, XRE family [Ethanoligenens harbinense YUAN-3] gi|315470912|gb|ADU27516.1| transcriptional regulator, XRE family [Ethanoligenens harbinense YUAN-3] Length = 262 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 31/66 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G+SQEKL E G++ Q V K+E G ++ +L +S++ + Sbjct: 5 ERLQALRKQAGLSQEKLAEACGVSRQAVSKWEAGQSQPDMDKLVLLSKLFGISLDELVKG 64 Query: 77 SPTVCS 82 Sbjct: 65 KADAGP 70 >gi|228956760|ref|ZP_04118546.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802948|gb|EEM49780.1| Helix-turn-helix domain protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 117 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 41/110 (37%), Gaps = 6/110 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R G +Q + E L I + YE G + L ++++ + + + Sbjct: 1 MTLGERLRTCREKSGYTQTYITEKLEIHRGTLSSYESGRRKPDYDTLSKLADIYKVSVDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 S D +T G ++ + + R+ +L Sbjct: 61 LLGRSTDKRLTAE------QDKQATVMGRKIEELISNLSKEEQRKAWEQL 104 >gi|222081796|ref|YP_002541161.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726475|gb|ACM29564.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 204 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 39/93 (41%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + N VD+ VG+R+R R+ +S +L GI+ + + E+G++ + + ++ Sbjct: 13 RDANEVDVLVGRRVRALRLERNLSLAELATRTGISIGALSQIERGMSSLRVRVIWPLAAA 72 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 L+ S +D+ N + Sbjct: 73 LDVEPSALIVDGGEPVNDLYCVRANSRRPLPVR 105 >gi|46907036|ref|YP_013425.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|226223423|ref|YP_002757530.1| transcription regulator [Listeria monocytogenes Clip81459] gi|254823927|ref|ZP_05228928.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|254931186|ref|ZP_05264545.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|254993305|ref|ZP_05275495.1| transcription regulator [Listeria monocytogenes FSL J2-064] gi|255521055|ref|ZP_05388292.1| transcription regulator [Listeria monocytogenes FSL J1-175] gi|46880302|gb|AAT03602.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|225875885|emb|CAS04589.1| Putative transcription regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293582734|gb|EFF94766.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|293593153|gb|EFG00914.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|328467356|gb|EGF38436.1| transcription regulator [Listeria monocytogenes 1816] gi|332311210|gb|EGJ24305.1| DNA-binding protein [Listeria monocytogenes str. Scott A] Length = 180 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD I E + Sbjct: 61 FFDEEEHNQKVIYGELEH 78 >gi|83309542|ref|YP_419806.1| hypothetical protein amb0443 [Magnetospirillum magneticum AMB-1] gi|82944383|dbj|BAE49247.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 282 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 8/117 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+R+ R +G++Q ++ G+ + Y G + L+ I+ I++ Sbjct: 110 MTVGQRLEQVRASMGLTQAEIAAQSGVPLRTYSSYATGKRQPSNDLLEWIAR-RGYSINW 168 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S + + S + G L F + D ++ +I E+V ++ + Sbjct: 169 LLTGSGAMQTGESIIDPTCG------SGAFLLNAFAVL-DAELNGRINEVVTTVYAE 218 >gi|85707104|ref|ZP_01038192.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85668390|gb|EAQ23263.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 207 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+D +G R+R R G + E+ + G+ + K E G L+ +++ LE Sbjct: 22 PEPLD--LGVRVRGLRKARGWTLEQAAKQAGLARSTLSKIENGQMSPTYDALKKLAQGLE 79 Query: 68 SPISFFFD 75 + F Sbjct: 80 ISVPQLFT 87 >gi|126090267|ref|YP_001041722.1| putative phage repressor [Shewanella baltica OS155] gi|125999898|gb|ABN63967.1| putative phage repressor [Shewanella baltica OS155] Length = 213 Score = 50.2 bits (118), Expect = 8e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI+ RR + G++QE LG +G++ V +E G N + L ++ VL + Sbjct: 2 KKIGHRIKTRRKLKGLTQEALGLAVGVSKVSVSSWELGKNSMHPELLNKVAGVLGVDAHW 61 Query: 73 FFDVSPTVCSDISSEENNV 91 + + Sbjct: 62 LLTGESFATLEDEKDSVFW 80 >gi|293378126|ref|ZP_06624295.1| DNA-binding protein [Enterococcus faecium PC4.1] gi|292642990|gb|EFF61131.1| DNA-binding protein [Enterococcus faecium PC4.1] Length = 180 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 39/82 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEE 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 FF + S+E++ + F Sbjct: 61 FFHQEAANLQVVYSKEDHTVYF 82 >gi|291529971|emb|CBK95556.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 122 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 1/103 (0%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FFD 75 +RI+ R G SQ ++ E LG+T Q YE G + L I+E + Sbjct: 14 ERIKQLRKAKGASQAQVAEYLGVTKQAYSLYETGKREPPFATLLKIAEYFGTDTDTLLMS 73 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 SD + + D L + + R K Sbjct: 74 GDTARVSDPRLKFALFGETEIDDDVLDDVKRLAMLQLELRRSK 116 >gi|254781218|ref|YP_003065631.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter asiaticus str. psy62] gi|254040895|gb|ACT57691.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter asiaticus str. psy62] gi|317120682|gb|ADV02505.1| hypothetical protein SC1_gp125 [Liberibacter phage SC1] gi|317120826|gb|ADV02647.1| hypothetical protein SC1_gp125 [Candidatus Liberibacter asiaticus] Length = 205 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V NKK +P +G R++ R GMSQ + G+ LG+ + YE+G + Sbjct: 103 VTNKKRLDP--YAIGARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQGRTIPEIKPARK 160 Query: 62 ISEVLESPISFFFDVSP 78 I +V + + + + Sbjct: 161 IKQVTKKHLDWIYFGDE 177 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 1/124 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RI+ R +Q+++ V +E G+ ++ E + + Sbjct: 32 VGTRIKDIRKANNKTQKEMAIGANQLESAVNLFENGMCSTSIRYALYLRNEYEISFDWIY 91 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 D +D + L+ R + ++ K++ + S +S+ ++ R Sbjct: 92 DGEVIDRRYEDVTNKKRLDPYAIGARLKSIRKDKGMSQIEF-GKLLGMPNSTLSNYEQGR 150 Query: 135 TIEE 138 TI E Sbjct: 151 TIPE 154 >gi|253580586|ref|ZP_04857850.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847957|gb|EES75923.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 111 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R+ L ++QE+L E G + + ++E G + L +S+VL I +F Sbjct: 6 IGKRIAEARINLNITQEQLEELSGFSVSTISRFETGRTQPSIENLIKLSKVLNVGIDYFL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 I S + + + +Y + I Sbjct: 66 YDLIPHNETIQSPTVKDAVTVLSQMNERQAQYMLDI 101 >gi|167747135|ref|ZP_02419262.1| hypothetical protein ANACAC_01848 [Anaerostipes caccae DSM 14662] gi|167654095|gb|EDR98224.1| hypothetical protein ANACAC_01848 [Anaerostipes caccae DSM 14662] Length = 239 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K + R G SQE+LG L ++ Q V K+E G ++L +S + + I Sbjct: 5 KNLNRFRKEKGWSQEELGNRLNVSRQTVSKWELGTTTPEMNKLMELSRIFQVSIDELVGN 64 Query: 77 SPTVCS 82 S Sbjct: 65 SNAPGE 70 >gi|115334658|ref|YP_764504.1| immunity repressor protein [Geobacillus phage GBSV1] gi|84688608|gb|ABC61304.1| immunity repressor protein [Geobacillus phage GBSV1] Length = 148 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 36/86 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R+ R G++QE+LG + +T + YE G L+ +++ L+ I + Sbjct: 5 QRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDMDTLKALADALDVSIDYLLGR 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 T +D D L+ Sbjct: 65 DNTQPTDTKLPALTEKDERDIQKELE 90 >gi|20090284|ref|NP_616359.1| transcriptional regulator [Methanosarcina acetivorans C2A] gi|19915282|gb|AAM04839.1| transcriptional regulator, Hth-3 family [Methanosarcina acetivorans C2A] Length = 192 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 15/148 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + VG +IR R M+ E+L E + + +Q+ E G + L Sbjct: 1 MSEENR--------VGSKIRHLREAQDMTVEELAEASQSSVELIQQLENGALVPSLTPLL 52 Query: 61 HISEVLESPISFFFDVSPTVCSDISS---EENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 I+ L + F D +P + EN V T + F + K + Sbjct: 53 KIARALGVRLGTFLDDAPQKGPVVVRAGLSENVVRFSGKTEQPKKSALDFYSLASDKADR 112 Query: 118 K----IIELVRSIVSSEKKYRTIEEECM 141 II++ S S K EE + Sbjct: 113 HMEPFIIDIHSSPEESHKLSSHEGEEFI 140 >gi|328954840|ref|YP_004372173.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2] gi|328455164|gb|AEB06358.1| transcriptional regulator, XRE family [Coriobacterium glomerans PW2] Length = 211 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 35/69 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IRL R I+G++Q +L E +G+ V ++E G + +Q +++ L P++ Sbjct: 1 MALPENIRLIRKIIGLTQAQLAERIGVARTTVTQWENGTSNPPIKTIQRLAQTLGVPVTI 60 Query: 73 FFDVSPTVC 81 + Sbjct: 61 VVGDNDAND 69 >gi|298250743|ref|ZP_06974547.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297548747|gb|EFH82614.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 850 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G R+R R+ L +SQE L E L I+ + ++++E+G AS +S Sbjct: 1 MHFGNRLRQERLRLHLSQEALAEALAISARSIRRWEQGQALPQASVRLQLSRFFGLRSEA 60 Query: 73 FFDVSPTVCS 82 F+ T Sbjct: 61 LFEDEETQTP 70 >gi|289769674|ref|ZP_06529052.1| transcriptional regulator [Streptomyces lividans TK24] gi|289699873|gb|EFD67302.1| transcriptional regulator [Streptomyces lividans TK24] Length = 208 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 4/102 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G++ +L GI+ + + E G G L ++ P+ Sbjct: 21 LGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAHRLPLDELV 80 Query: 75 ---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 P V + + T + + QI Sbjct: 81 GSRTGDPRVHPRPFTRHGQTWVPL-TRNPNDGLHAYKQILPA 121 >gi|256785782|ref|ZP_05524213.1| hypothetical protein SlivT_14926 [Streptomyces lividans TK24] Length = 202 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 4/102 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G++ +L GI+ + + E G G L ++ P+ Sbjct: 15 LGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAHRLPLDELV 74 Query: 75 ---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 P V + + T + + QI Sbjct: 75 GSRTGDPRVHPRPFTRHGQTWVPL-TRNPNDGLHAYKQILPA 115 >gi|254719247|ref|ZP_05181058.1| hypothetical protein Bru83_06846 [Brucella sp. 83/13] gi|265984243|ref|ZP_06096978.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306837996|ref|ZP_07470854.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653] gi|264662835|gb|EEZ33096.1| conserved hypothetical protein [Brucella sp. 83/13] gi|306406920|gb|EFM63141.1| Cro/CI family transcriptional regulator [Brucella sp. NF 2653] Length = 478 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 46/131 (35%), Gaps = 8/131 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G++IR R +Q E LGI+ + + E V A+ L ++E + Sbjct: 3 PRKLYIGRKIREIREQHRATQSGFAERLGISTSYLNQIENNQRPVSAAVLLALAENYQID 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I SE F + LQ + Q L ++++ Sbjct: 63 IGPISLGDDDRLLSAVSEALADPVFDNYKPSLQEMKLITQNAP--------GLAHALIAC 114 Query: 130 EKKYRTIEEEC 140 + YR E+ Sbjct: 115 HQAYRRNSEQL 125 >gi|170732119|ref|YP_001764066.1| Cro/CI family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169815361|gb|ACA89944.1| transcriptional regulator, Cro/CI family [Burkholderia cenocepacia MC0-3] Length = 106 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 46/114 (40%), Gaps = 15/114 (13%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R+ LG++Q + + + +YEKG+ R + L+ I+ + + + Sbjct: 5 GERLKCERVRLGLNQTEFAALGAVKQRAQYQYEKGLRRPNSDYLRAIA-LAGVDVWYVLT 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + E V F + D + R+ I+ L+ +I Sbjct: 64 GEESARLENLDERRIVSGF--------------RALDARKREVILALIEAIAER 103 >gi|39997635|ref|NP_953586.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39984527|gb|AAR35913.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|298506575|gb|ADI85298.1| helix-turn-helix transcriptional regulator PuuR, cupin domain-containing [Geobacter sulfurreducens KN400] Length = 181 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 6/127 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ RMI ++QE+L +T + + E + L+ I +V + Sbjct: 1 MKIGERLKRLRMINSLTQEELANRADLTKGYISQLENDATSPSIATLKDILDVFGVSMQE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF + ++L + + R+ LV ++ E+ Sbjct: 61 FFSDPIGEDVVYGKDARVQPSADDAAVMVELL-----VPGAQNREMDPALV-TLAPGEEM 114 Query: 133 YRTIEEE 139 E Sbjct: 115 DEQNFHE 121 >gi|21223122|ref|NP_628901.1| hypothetical protein SCO4743 [Streptomyces coelicolor A3(2)] gi|3449255|emb|CAA20399.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length = 201 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 4/102 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G++ +L GI+ + + E G G L ++ P+ Sbjct: 14 LGARLRAIRQARGLTLAQLAAATGISVSTLSRLESGQREPGLRHLLPLARAHRLPLDELV 73 Query: 75 ---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 P V + + T + + QI Sbjct: 74 GSRTGDPRVHPRPFTRHGQTWVPL-TRNPNDGLHAYKQILPA 114 >gi|327439445|dbj|BAK15810.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 133 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 53/124 (42%), Gaps = 2/124 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I+ R+ SQ L + +G+T V +YE+G + A L I++VLE+ + F Sbjct: 9 FIGNKIKDYRLKKKYSQADLAKLIGVTNTSVSEYERGKVNIDADTLFQIADVLEAKVDDF 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVRSIVSSEK 131 F + I + L F + + + + R+K ++ ++ + Sbjct: 69 FPARKSDSEPIDLMNEFRNINLDAKYLLMFKEMFDKANSMNEEERKKYLDSLKLTIEFHD 128 Query: 132 KYRT 135 K R Sbjct: 129 KLRN 132 >gi|285018770|ref|YP_003376481.1| transcriptional regulator transcription regulator protein [Xanthomonas albilineans GPE PC73] gi|283473988|emb|CBA16489.1| putative transcriptional regulator transcription regulator protein [Xanthomonas albilineans] Length = 115 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 42/109 (38%), Gaps = 2/109 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++QE+LG LG+T + +E L + VL+ + Sbjct: 5 GDRLREARKAAGLTQEQLGFSLGVTKSSISAWENDRETPSFRLLPMLRVVLKRSLDDLVC 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + + + L R + + R+ ++EL++ Sbjct: 65 GHVPSARLQEASPDYALQARDPHEQALLTR--YRNMPARRREAVLELLK 111 >gi|325679169|ref|ZP_08158760.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324109098|gb|EGC03323.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 373 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 47/130 (36%), Gaps = 6/130 (4%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 + R ++QE+ E ++ Q V ++E G + L I+E I V Sbjct: 10 KKFRRERELTQEQAAEAFSVSTQAVSRWENGQTSPDITLLPIIAEYFGVSIETLLGVDSE 69 Query: 80 VCSDISSEENNVMDFISTP----DGLQLNRYFIQIDDVKVRQKIIELVRSIVSS-EKKYR 134 + + N + D +++ R ++ + + L+ ++ S EK Sbjct: 70 KRKALHEQYMNDFETAIKSGRVNDCIEIARAGLKEF-PHSYELMNALMEALFKSGEKSAG 128 Query: 135 TIEEECMVEQ 144 + E E+ Sbjct: 129 NPDWEENREK 138 >gi|257875354|ref|ZP_05655007.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257809520|gb|EEV38340.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 396 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 31/64 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G+ I RR G++Q++L + ++ V K+E G + + L ++ + + Sbjct: 1 MDLPIGEEIARRRKQRGITQQELAVFMNVSKASVSKWETGQSYPDITSLPLLAAYFDCSV 60 Query: 71 SFFF 74 Sbjct: 61 DELL 64 >gi|229162632|ref|ZP_04290592.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus R309803] gi|228620895|gb|EEK77761.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus R309803] Length = 117 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G++QE+LG L ++ Q+ YE + L IS P+ F Sbjct: 9 QNLKELRKSRGLTQEQLGSELNLSRNQINNYENKLFEPSMETLLQISSFFNVPLDTLFSG 68 Query: 77 SPTVCSDISSEE 88 + + Sbjct: 69 YDQTKDTVLEQA 80 >gi|54022032|ref|YP_116274.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54013540|dbj|BAD54910.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 202 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR RR LG+ Q +L E +G+T +Q+ +YE G AS + ++ L + F Sbjct: 5 IGEIIRDRREALGLGQRELSERVGVTERQIGRYESGAQEPAASTCRLLARALHLSFAQLF 64 Query: 75 DVSP 78 P Sbjct: 65 GEVP 68 >gi|325569494|ref|ZP_08145590.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157283|gb|EGC69446.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 146 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 36/92 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I+ R+ LG++Q+++ E L +T Q + +E + L +S++ + + Sbjct: 1 MTIAEKIKESRLKLGLTQQEVSEKLFVTRQTISNWENNRSTPDIDTLIKLSDLYQIDLEA 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 E F L L Sbjct: 61 LLKPEQLADEPERMSEEKKPTFRLPLYLLNLT 92 >gi|126737472|ref|ZP_01753207.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126722057|gb|EBA18760.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 193 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Query: 1 MVGNKKIPN-PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M KK P+ +G R+R R ++ ++L G++ + + E+ L Sbjct: 1 MDDQKKRETQPI---IGARMRELRKAKHLTLKQLAAETGLSIGYLSQLERQDADPSIRAL 57 Query: 60 QHISEVLESPISFFFDVSPTVCSDIS 85 I + L I++FF + Sbjct: 58 NVIGKALGVGINWFFPGPEDQEGPEA 83 >gi|307130525|ref|YP_003882541.1| MunI regulatory protein [Dickeya dadantii 3937] gi|306528054|gb|ADM97984.1| MunI regulatory protein [Dickeya dadantii 3937] Length = 102 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 34/75 (45%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + K + G+R++ R+ G+SQE + G+ + E+GV + Sbjct: 27 MLISMKNTKDISARFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIG 86 Query: 61 HISEVLESPISFFFD 75 I++ LE + FD Sbjct: 87 VIADRLEIQLQSLFD 101 >gi|295401476|ref|ZP_06811446.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294976526|gb|EFG52134.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 179 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 38/85 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K+IR R ++ ++L E G++ + + E+G + + L+ I++ LE PI+ F Sbjct: 3 EIYKKIRDLRKQRDLTLKELSEKTGLSISFLSQVERGSTSLAITSLKKIADALEVPITDF 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTP 98 F+ + E + Sbjct: 63 FENEENKNFVVKLENQKPFRIEGSS 87 >gi|154496374|ref|ZP_02035070.1| hypothetical protein BACCAP_00662 [Bacteroides capillosus ATCC 29799] gi|150274457|gb|EDN01534.1| hypothetical protein BACCAP_00662 [Bacteroides capillosus ATCC 29799] Length = 307 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 37/87 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G+SQE LGE LG++ Q + K+E +L +S + E + Sbjct: 1 MTLGQKIQTLRHDAGLSQEGLGEKLGVSRQAISKWEADGAVPEVDKLIALSRLFEVNLHD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 V T + + + Sbjct: 61 LLQVEGTSREEPEESGEQPPEEAAENP 87 >gi|325677790|ref|ZP_08157432.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324110344|gb|EGC04518.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 197 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ R G+++ + E LG +Q++E G + L HI++VL + Sbjct: 137 IGRKIQKYREERGLTRNEFAEMLGCVMPTIQRWESGTRVPDVTMLMHIAKVLGVGVEDL 195 >gi|293400092|ref|ZP_06644238.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306492|gb|EFE47735.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 247 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 33/80 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + VG I R ++Q+ L + L ++ + V K+E+GV+ L ++ + + ++ Sbjct: 6 NEKVGSYISELRKAKKLTQKDLADKLYVSDKTVSKWERGVSMPSIPLLMPLANLFDITVT 65 Query: 72 FFFDVSPTVCSDISSEENNV 91 ++ + Sbjct: 66 ELLKGEHQNIESLTKPCDIH 85 >gi|1196926|gb|AAA88585.1| unknown protein [Streptococcus mutans] Length = 228 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR LG+SQ + + LGI+ +E G + L ++ +L+ ++F Sbjct: 5 QKLKERRKKLGLSQAQTADKLGISRPSYFNWEIGKTKPNQKNLDKLAHLLKVDSAYFLSQ 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 V E+N + L Sbjct: 65 HDIVEIYTRLNESNKTKTLKYSQHL 89 >gi|325569676|ref|ZP_08145723.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755] gi|325157232|gb|EGC69397.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755] Length = 396 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G+ I RR G++Q++L + ++ V K+E G + L ++ + + Sbjct: 1 MDLPIGEEIARRRKHRGVTQQELAAFMNVSKASVSKWETGQTYPDITSLPLLAAYFDCSV 60 Query: 71 SFFF 74 Sbjct: 61 DELL 64 >gi|197295483|ref|YP_002154024.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|195944962|emb|CAR57578.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 116 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 37/109 (33%), Gaps = 15/109 (13%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R + ++Q + E G+ Q YE+G R ++ L ++ + + Sbjct: 7 RLKQERKRMRLTQPEFAELGGVHKQAQFHYERGTRRPNSNYLVGLAS-AGVDVYYLLTGR 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + E+ + D R ++ L+ ++ Sbjct: 66 VATLASTVEEQQ--------------ILSRYRALDADQRIAVLALIDTM 100 >gi|257417719|ref|ZP_05594713.1| conserved hypothetical protein [Enterococcus faecalis AR01/DG] gi|45827617|gb|AAS78452.1| BcrR [Enterococcus faecalis] gi|257159547|gb|EEU89507.1| conserved hypothetical protein [Enterococcus faecalis ARO1/DG] Length = 204 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R ++QE+L E L ++ + K+E G L+ IS+ I Sbjct: 5 EKLQQLRTGKNLTQEQLAEQLYVSRTAISKWESGKGYPNMESLKCISKFFSVTIDELLSG 64 Query: 77 SP 78 Sbjct: 65 EE 66 >gi|121606206|ref|YP_983535.1| XRE family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595175|gb|ABM38614.1| putative transcriptional regulator, XRE family [Polaromonas naphthalenivorans CJ2] Length = 126 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 4/122 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R L MSQ + +T K+E+G A L +++ L + + Sbjct: 4 IGERILEERNRLKMSQAAMATHCQVTTVTQGKWERGKGTPNAGYLAEMAK-LGVDVMYVV 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 +E+ + ++ L + + DD V + IE ++ + K R Sbjct: 63 TGMRMPAPAEGTEQGTQLVQLNQRQQA-LIQNYDAADD--VGKTFIEGTATLATQPKVKR 119 Query: 135 TI 136 Sbjct: 120 AS 121 >gi|69245031|ref|ZP_00603189.1| Helix-turn-helix motif:Cupin region [Enterococcus faecium DO] gi|257879271|ref|ZP_05658924.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257881911|ref|ZP_05661564.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257883903|ref|ZP_05663556.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] gi|257890099|ref|ZP_05669752.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257892889|ref|ZP_05672542.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|258615672|ref|ZP_05713442.1| Cro/CI family transcriptional regulator [Enterococcus faecium DO] gi|260558717|ref|ZP_05830906.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium C68] gi|261208793|ref|ZP_05923230.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium TC 6] gi|289566416|ref|ZP_06446843.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium D344SRF] gi|293553978|ref|ZP_06674581.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1039] gi|293563215|ref|ZP_06677668.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1162] gi|293567490|ref|ZP_06678836.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1071] gi|293573068|ref|ZP_06684008.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E980] gi|294614455|ref|ZP_06694371.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1636] gi|294617942|ref|ZP_06697547.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1679] gi|294622380|ref|ZP_06701409.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] gi|314937335|ref|ZP_07844675.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314940969|ref|ZP_07847872.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314949058|ref|ZP_07852420.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|314953462|ref|ZP_07856378.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314994151|ref|ZP_07859458.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314995961|ref|ZP_07861041.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|68196032|gb|EAN10464.1| Helix-turn-helix motif:Cupin region [Enterococcus faecium DO] gi|257813499|gb|EEV42257.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817569|gb|EEV44897.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257819741|gb|EEV46889.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] gi|257826459|gb|EEV53085.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257829268|gb|EEV55875.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,408] gi|260075176|gb|EEW63489.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium C68] gi|260077295|gb|EEW65015.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium TC 6] gi|289161791|gb|EFD09664.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecium D344SRF] gi|291589799|gb|EFF21601.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1071] gi|291592763|gb|EFF24356.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1636] gi|291595751|gb|EFF27039.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1679] gi|291598140|gb|EFF29243.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] gi|291601861|gb|EFF32110.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1039] gi|291604810|gb|EFF34291.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1162] gi|291606861|gb|EFF36243.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E980] gi|313589837|gb|EFR68682.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313591418|gb|EFR70263.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313594495|gb|EFR73340.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313600201|gb|EFR79044.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313643286|gb|EFS07866.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|313644535|gb|EFS09115.1| helix-turn-helix protein [Enterococcus faecium TX0082] Length = 180 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 39/82 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEE 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 FF + S+E++ + F Sbjct: 61 FFHQEAANLQVVYSKEDHTVYF 82 >gi|229828089|ref|ZP_04454158.1| hypothetical protein GCWU000342_00139 [Shuttleworthia satelles DSM 14600] gi|229792683|gb|EEP28797.1| hypothetical protein GCWU000342_00139 [Shuttleworthia satelles DSM 14600] Length = 327 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE+L E L ++ Q V K+E + +++ +SEV + Sbjct: 1 MILADKIIDLRKKNGWSQEELAEKLDVSRQSVSKWEGARSVPDMNKILRLSEVFAVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + + + Sbjct: 61 LLKDEISAPEGTNVPVDTESE 81 >gi|260583710|ref|ZP_05851458.1| transcriptional regulator [Granulicatella elegans ATCC 700633] gi|260158336|gb|EEW93404.1| transcriptional regulator [Granulicatella elegans ATCC 700633] Length = 285 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 55/131 (41%), Gaps = 23/131 (17%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ RR+ L ++Q++L E + Q+ + E A L+ +S L + +F Sbjct: 1 MLGERLKHRRLELNLTQKELSEGI-CKQSQISRIENQNYDPSALILKKLSVRLNVSMDYF 59 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR---SIVSSE 130 F+ + + F +I D + Q+ + S+ ++ Sbjct: 60 FNTKLEETDSV-------------------LKSFKKIADDALSQRDFSKLEYCLSLELNK 100 Query: 131 KKYRTIEEECM 141 K+ T+EE+ + Sbjct: 101 KQKITLEEDLI 111 >gi|257868622|ref|ZP_05648275.1| DNA binding protein [Enterococcus gallinarum EG2] gi|257802786|gb|EEV31608.1| DNA binding protein [Enterococcus gallinarum EG2] Length = 172 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 35/81 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++++L R G+SQ + E L I+ Q + K+E G L +S++ + I Sbjct: 1 MALAEQLKLYREKSGLSQASVAEELKISRQSISKWENGRGYPDIDNLVLLSKLYQVSIDE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + I + D Sbjct: 61 LLQENEQLKEQIQKNNVEIED 81 >gi|229164709|ref|ZP_04292573.1| Helix-turn-helix/TPR domain protein [Bacillus cereus R309803] gi|228618789|gb|EEK75751.1| Helix-turn-helix/TPR domain protein [Bacillus cereus R309803] Length = 421 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R ++QEKL + + IT + + EKG+ + L+ +S L + F Sbjct: 1 MLGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDF 59 Query: 74 FDVSPTVCSDISSEENN 90 FDV +S + + Sbjct: 60 FDVVENKELTLSQIKKD 76 >gi|290894443|ref|ZP_06557403.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|290556004|gb|EFD89558.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] Length = 169 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLLGE 63 >gi|70733674|ref|YP_257314.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68347973|gb|AAY95579.1| DNA-binding protein, putative [Pseudomonas fluorescens Pf-5] Length = 120 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 35/74 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R +SQ +LG+ + + + +YE+G +R L+ +++ L+ + + Sbjct: 10 ERLRSLRKQKNLSQTELGQLAELHYTHIGRYERGTSRPSGDTLKRLADALDVSSDYLLEG 69 Query: 77 SPTVCSDISSEENN 90 + + E+ Sbjct: 70 ASDDAAKAKFEDRE 83 >gi|44004506|ref|NP_982174.1| helix-turn-helix/TPR domain-containing protein [Bacillus cereus ATCC 10987] gi|190015190|ref|YP_001966786.1| putative transcriptional regulator [Bacillus cereus] gi|190015455|ref|YP_001967110.1| putative transcriptional regulator [Bacillus cereus] gi|218848240|ref|YP_002455177.1| helix-turn-helix/TPR domain protein [Bacillus cereus AH820] gi|229113469|ref|ZP_04242919.1| Helix-turn-helix/TPR domain protein [Bacillus cereus Rock1-15] gi|296506587|ref|YP_003667821.1| helix-turn-helix/TPR domain-containing protein [Bacillus thuringiensis BMB171] gi|42741572|gb|AAS45017.1| helix-turn-helix/TPR domain protein [Bacillus cereus ATCC 10987] gi|116584866|gb|ABK00981.1| putative transcriptional regulator [Bacillus cereus] gi|116585136|gb|ABK01245.1| putative transcriptional regulator [Bacillus cereus] gi|218540291|gb|ACK92687.1| helix-turn-helix/TPR domain protein [Bacillus cereus AH820] gi|228669987|gb|EEL25380.1| Helix-turn-helix/TPR domain protein [Bacillus cereus Rock1-15] gi|296327174|gb|ADH10101.1| helix-turn-helix/TPR domain-containing protein [Bacillus thuringiensis BMB171] Length = 421 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R ++QEKL + + IT + + EKG+ + L+ +S L + F Sbjct: 1 MLGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDF 59 Query: 74 FDVSPTVCSDISSEENN 90 FDV +S + + Sbjct: 60 FDVVENKELTLSQIKKD 76 >gi|298375353|ref|ZP_06985310.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_19] gi|298267853|gb|EFI09509.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_19] Length = 138 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 10/129 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R G+ QE L + +G++ + YEK + + L+ I++ L+ PI + Sbjct: 20 GANLKRWREWRGIKQEVLADKIGVSQATLSGYEK-KDELEPEVLEKITKALDIPIEAITE 78 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 ++ +I S +T G N+ F I KI+EL ++ +E++ Sbjct: 79 LNEGALINIYSGT---WQDNATAAGSIQNQTFNPI------DKIVELYERLLKAEQEKVA 129 Query: 136 IEEECMVEQ 144 + E + ++ Sbjct: 130 MLHEIIKDK 138 >gi|291536345|emb|CBL09457.1| Uncharacterized conserved protein, contains double-stranded beta-helix domain [Roseburia intestinalis M50/1] Length = 179 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKR++ R+ G++Q++L + +T + + E+ N L I + L + + Sbjct: 1 MDIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNSPSIGTLLDIIQCLGTTPAE 60 Query: 73 FFDVSPTVCSDISSEE 88 FF ++ Sbjct: 61 FFTDEEPEQIVFEKDD 76 >gi|290581291|ref|YP_003485683.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|254998190|dbj|BAH88791.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 228 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR LG+SQ + + LGI+ +E G + L ++ +L+ ++F Sbjct: 5 QKLKERRKKLGLSQAQTADKLGISRPSYFNWEIGKTKPNQKNLDKLAHLLKVDSAYFLSQ 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 V E+N + L Sbjct: 65 HDIVEIYTRLNESNKTKTLKYSQHL 89 >gi|239820588|ref|YP_002947773.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805441|gb|ACS22507.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 67 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I+ R G+SQE+L I + E+G+ G + I+ L ++ Sbjct: 1 MALGTAIKALRKTHGISQEELAHRSHIDRSYMSSIERGMQNPGVMTVVQIAAGLGVSVAE 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|227508341|ref|ZP_03938390.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192159|gb|EEI72226.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 237 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 30/64 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + K+I+ R ++Q++L E + ++ + + +E G N + +SE+ E I Sbjct: 22 IMTELSKKIKQYRKEKNLTQKQLAEKMFVSRKLISNWENGRNFPDFRAMIRLSEIFEIKI 81 Query: 71 SFFF 74 Sbjct: 82 DDLL 85 >gi|254475536|ref|ZP_05088922.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214029779|gb|EEB70614.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 131 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 12/123 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R GM+Q +L LG+ + +E+ ++ A++L ++ +L + + Sbjct: 17 GDRVAAAREAAGMTQAQLARRLGVKKTTLTGWEQDLSEPRANKLTMMAGLLNVSMGWLLT 76 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + E+ L ++ ++R+++ V EK+ R Sbjct: 77 GEGEGMDAPAGEQVPQ----------DLAAILTEL--RQLREEMRGNVERAARLEKRLRL 124 Query: 136 IEE 138 + E Sbjct: 125 VIE 127 >gi|196042830|ref|ZP_03110069.1| DNA-binding protein [Bacillus cereus 03BB108] gi|229185561|ref|ZP_04312741.1| hypothetical protein bcere0004_31130 [Bacillus cereus BGSC 6E1] gi|196026314|gb|EDX64982.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228597956|gb|EEK55596.1| hypothetical protein bcere0004_31130 [Bacillus cereus BGSC 6E1] Length = 374 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 P + + E + + + ++ + + + ++ I+ + Sbjct: 64 LISYKPQMEQEDIKELYHRLAEAFSEKSFDEVMMECREIIKKYYSCFPLLIQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K I EE + Sbjct: 124 HMLTEDTDKRIEILEEAI 141 >gi|206975303|ref|ZP_03236217.1| helix-turn-helix/TPR domain protein [Bacillus cereus H3081.97] gi|206746724|gb|EDZ58117.1| helix-turn-helix/TPR domain protein [Bacillus cereus H3081.97] Length = 421 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R ++QEKL + + IT + + EKG+ + L+ +S L + F Sbjct: 1 MLGQRIKELRKQKKLTQEKLADGI-ITRSYLSQIEKGLIQPSYEVLEALSNKLNCSVEDF 59 Query: 74 FDVSPTVCSDISSEENN 90 FDV +S + + Sbjct: 60 FDVVENKELTLSQIKKD 76 >gi|166032918|ref|ZP_02235747.1| hypothetical protein DORFOR_02639 [Dorea formicigenerans ATCC 27755] gi|166027275|gb|EDR46032.1| hypothetical protein DORFOR_02639 [Dorea formicigenerans ATCC 27755] Length = 298 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 39/79 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I +R LGM+Q++L E LG++ + V K+E+GV S + + +L ++ Sbjct: 4 IKIGKYIASKRKSLGMTQKQLAEKLGMSDKSVSKWERGVCLPDVSVYKELCSILGISLNE 63 Query: 73 FFDVSPTVCSDISSEENNV 91 F ++ + Sbjct: 64 FLAGEDIAQENLIQKSETN 82 >gi|160901295|ref|YP_001566877.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160366879|gb|ABX38492.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 470 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 6/121 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R G+SQ L LG++ + + E+ + S L ++ L I F + Sbjct: 7 GVKLRKLRAEHGLSQIALAHALGLSPSYLNQLEQNQRPLTVSVLLKLNRALGVDIQQFSE 66 Query: 76 VSPTVCSDISSEE-NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 E + I+ P+ ++ + + ++ L R + + ++ Sbjct: 67 DEEARLVAGLREALAESPESIALPELQEVAAQMPALG-----RAVMALHRRHLEALERIE 121 Query: 135 T 135 + Sbjct: 122 S 122 >gi|94990047|ref|YP_598147.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270] gi|94543555|gb|ABF33603.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10270] Length = 249 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 12/122 (9%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFFFDVS 77 ++ R+ ++ E+L E LG T + K+EKG ++ I++ P F + Sbjct: 11 VKELRLGKNLTMEQLAEELGKTKSTISKWEKGTRSPKIYEIEEIAKFFGVEPKKMMFGDN 70 Query: 78 PTVCSDISSEENNVMDFI-STPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 PT + + + I ST L+ +R I +++ +++ +K+ + Sbjct: 71 PTSINPQVELIPSTLQKINSTSSQLEHSRQII----------VLDTAETLLEQQKEIKNN 120 Query: 137 EE 138 E+ Sbjct: 121 ED 122 >gi|325068956|ref|ZP_08127629.1| XRE family transcriptional regulator [Actinomyces oris K20] Length = 80 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 1 MVGNKKIP-NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M ++K P +P G+R+R RR LG+SQEKL E + + + + E+G + + Sbjct: 1 MPTDRKPPLSPATGEFGRRVRARREQLGLSQEKLAERTTLHWSYIGQVERGQRNLSLHNI 60 Query: 60 QHISEVLESPISFFFDVSP 78 I+ L++ Sbjct: 61 LRIAHALDTDAGGLVSGLE 79 >gi|325262886|ref|ZP_08129622.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324031980|gb|EGB93259.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 81 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 9/83 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ NK +G +IR R + ++QE++ + L +T Q + YE G L Sbjct: 1 MMSNK---------IGCKIRALRKMNYLTQEQMAKKLNMTRQTLSNYELGKRIPDIFELI 51 Query: 61 HISEVLESPISFFFDVSPTVCSD 83 I+++ + + +P + Sbjct: 52 RIADLFQISLDEIVGRNPNNLKN 74 >gi|315925909|ref|ZP_07922114.1| DNA-binding protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315620730|gb|EFV00706.1| DNA-binding protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 188 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 38/75 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V I + + I+ R G+SQ++L L + Q V K+E+G++ + L ISEVLE+P+ Sbjct: 17 VLIMLSENIKTIRKSKGLSQDELAVKLNVVRQTVSKWERGLSVPDSEMLISISEVLETPV 76 Query: 71 SFFFDVSPTVCSDIS 85 S S Sbjct: 77 STLLGESINESEASE 91 >gi|302672203|ref|YP_003832163.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396676|gb|ADL35581.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 209 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 3/126 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI M+Q++ + GI + + K G+ ++ I L+ + Sbjct: 1 MTIGQRIFYLLEEKHMTQKEFSDRTGIATTTISDWRKKNTNPGSDKIMSICAALDVTPEY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 SD + ++ T + +L F + + R ++E R I + + Sbjct: 61 LLSGVTED-SDRGRNIDYMVIPTGTEE-RELIEIFNDM-NFVDRAHVMEYARKISERKSR 117 Query: 133 YRTIEE 138 Y + Sbjct: 118 YCETAK 123 >gi|228920891|ref|ZP_04084230.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838822|gb|EEM84124.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 126 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 9/127 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R + +SQ++L + LG+T Q+ +YE+G ++ I++ + + Sbjct: 7 LGDRIRYLRELNNLSQKRLSDALGLTNTQLSRYERGERNPEPETIKLIADYFDVTTDYL- 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSEKK 132 ++ DF + D +L +F I D + R+++ I+ +E K Sbjct: 66 ------HGRTNNINYTNPDFKNILDDAELGLWFKDIKDASPEKREELKRFWEFIMQNEIK 119 Query: 133 YRTIEEE 139 ++ +++ Sbjct: 120 RKSGDKK 126 >gi|93007412|ref|YP_579176.1| transcriptional regulator [Streptomyces phage mu1/6] gi|90568490|gb|ABD94169.1| transcriptional regulator [Streptomyces phage mu1/6] Length = 93 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R+ G+SQ L +G+ + + + E GV+ + + I+ L P F Sbjct: 31 VGARIRELRLAAGLSQVDLSHRIGVDHRTISRAENGVHAISIDQAYRIATALGQPSWRLF 90 >gi|117924139|ref|YP_864756.1| XRE family transcriptional regulator [Magnetococcus sp. MC-1] gi|117607895|gb|ABK43350.1| transcriptional regulator, XRE family [Magnetococcus sp. MC-1] Length = 183 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 27/84 (32%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R ++Q+ L + I + EK + + I+ L I Sbjct: 7 GMRIRQLRSQRKLTQQALADMAEIPRATLATVEKDDANPSLAVVYKIARALGLSIDQLLV 66 Query: 76 VSPTVCSDISSEENNVMDFISTPD 99 + +++ ++ Sbjct: 67 TERERIQVVPADQMRWVETADGRY 90 >gi|331648293|ref|ZP_08349382.1| transciptional regulator [Escherichia coli M605] gi|331042842|gb|EGI14983.1| transciptional regulator [Escherichia coli M605] Length = 230 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RIR R + ++Q+ L + +G+T + ++E G L +++E L + Sbjct: 1 MINDRIREARRNVHLTQDALAKRIGLTKATISQWESGNTTPNGKNLINLAEALNVSPEWL 60 Query: 74 FDVSPTVCSDISSEENNVMDF 94 + +I S F Sbjct: 61 LSGKTSDTKEIHSNAQVEGGF 81 >gi|317055585|ref|YP_004104052.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447854|gb|ADU21418.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 313 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 37/97 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G IR R ++QE+L E LGIT + V ++E S+L ++ + Sbjct: 2 MTIGSTIRQLRQEQDITQEQLAEALGITSRAVSQWECDRTTPDISQLPALANFFDVTTDH 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 V + S+ + + +++ Sbjct: 62 LLGVDISRKEYEISKILKHIQISGVSGDREETERYLR 98 >gi|163761537|ref|ZP_02168609.1| hypothetical protein HPDFL43_21337 [Hoeflea phototrophica DFL-43] gi|162281251|gb|EDQ31550.1| hypothetical protein HPDFL43_21337 [Hoeflea phototrophica DFL-43] Length = 216 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 32/76 (42%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ +G +R R LG++ L G++ + K E G + LQ +S L Sbjct: 27 NNLERAIGHEVRAYRKKLGITVTDLSAATGVSIGMLSKIENGNISPSLTTLQSLSRALGV 86 Query: 69 PISFFFDVSPTVCSDI 84 P++ FF + Sbjct: 87 PVTAFFKGFEEPRNAT 102 >gi|15643421|ref|NP_228465.1| hypothetical protein TM0656 [Thermotoga maritima MSB8] gi|4981179|gb|AAD35740.1|AE001739_3 conserved hypothetical protein [Thermotoga maritima MSB8] Length = 176 Score = 50.2 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ G++QE+L E ++ + + E L+ I E L + + Sbjct: 1 MRIGEKLRKLRLSRGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKH 60 Query: 73 FFDVSPTVCSDISSEEN 89 FF EE Sbjct: 61 FFSDVEEERIVFKKEER 77 >gi|331087784|ref|ZP_08336710.1| hypothetical protein HMPREF1025_00293 [Lachnospiraceae bacterium 3_1_46FAA] gi|330409765|gb|EGG89201.1| hypothetical protein HMPREF1025_00293 [Lachnospiraceae bacterium 3_1_46FAA] Length = 181 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 27/66 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + I+ R ++Q++L + L ++ Q V ++E G + ++ L+ + Sbjct: 32 MALNDNIKKFREEKNLTQQQLADKLYVSRQTVCRWENGSRCPDLITAKKLALELDVSMDE 91 Query: 73 FFDVSP 78 Sbjct: 92 LISDED 97 >gi|304411730|ref|ZP_07393342.1| helix-turn-helix domain protein [Shewanella baltica OS183] gi|307306218|ref|ZP_07585963.1| helix-turn-helix domain protein [Shewanella baltica BA175] gi|304349918|gb|EFM14324.1| helix-turn-helix domain protein [Shewanella baltica OS183] gi|306911091|gb|EFN41518.1| helix-turn-helix domain protein [Shewanella baltica BA175] Length = 191 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 5/134 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K + G++ + + E+G + + L I+ + Sbjct: 4 INSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S F + +P + + + + +T L + + R +++ + Sbjct: 64 STFLEPTPQSQGAVFRKPDELRQQPATDGML-----VASLFPFEDRFGFEMFELTLLPNY 118 Query: 131 KKYRTIEEECMVEQ 144 ++ E + E Sbjct: 119 ERLSEPHEAGVTEH 132 >gi|288818628|ref|YP_003432976.1| transcriptional regulator of molybdate metabolism [Hydrogenobacter thermophilus TK-6] gi|288788028|dbj|BAI69775.1| transcriptional regulator of molybdate metabolism [Hydrogenobacter thermophilus TK-6] gi|308752218|gb|ADO45701.1| transcriptional regulator of molybdate metabolism, XRE family [Hydrogenobacter thermophilus TK-6] Length = 336 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R+ G+SQE+L + G+ + E G +S+ L + F Sbjct: 3 NKVKEYRLKRGLSQEELAKLCGMPRSTLSAIESGRAVPSVEYAIKLSKALGCTVEELFGE 62 Query: 77 SP 78 Sbjct: 63 EE 64 >gi|254512558|ref|ZP_05124624.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221532557|gb|EEE35552.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 468 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 8/127 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R +Q ++ LG++ + E + L I+E Sbjct: 6 IGPRLRQLRRDQKQTQAEMARNLGVSPSYINLLENNQRSLSVQMLMSIAEAYAIDWRELT 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 T F +Q R I D R LV + + + +R Sbjct: 66 KDESTRRVADLRNVVQDPVFTGERPDVQELRGAI---DHAPR-----LVNNFLQLHQAHR 117 Query: 135 TIEEECM 141 E+ + Sbjct: 118 NALEKIL 124 >gi|217971536|ref|YP_002356287.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|217496671|gb|ACK44864.1| transcriptional regulator, XRE family [Shewanella baltica OS223] Length = 191 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 5/134 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K + G++ + + E+G + + L I+ + Sbjct: 4 INSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S F + +P + + + + +T L + + R +++ + Sbjct: 64 STFLEPTPQSQGAVFRKPDELRQQPATDGML-----VASLFPFEDRFGFEMFELTLLPNY 118 Query: 131 KKYRTIEEECMVEQ 144 ++ E + E Sbjct: 119 ERLSEPHEAGVTEH 132 >gi|206564567|ref|YP_002235330.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] gi|198040607|emb|CAR56593.1| MerR family regulatory protein [Burkholderia cenocepacia J2315] Length = 192 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 11/143 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 N + + V +G +IR R L + + GI+ + + E+G+ + L Sbjct: 5 TENSRSADAV--ALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAG 62 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L + +F D S ++ F + F ++ +V +++ Sbjct: 63 IAHALGVTVQYFVDTPSEERSVCRGDQLRFFGFADS------TNLFARLTNVSEGRQLEA 116 Query: 122 LVRSIVSSEKKYR---TIEEECM 141 ++ + +K+ EE + Sbjct: 117 ILVRMPPGQKRSEVTTHAGEEFL 139 >gi|167463777|ref|ZP_02328866.1| prophage Lp1 protein 8 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 123 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 52/115 (45%), Gaps = 3/115 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R+ G SQE+ + +G+ + YE G N + L I+E + + + Sbjct: 12 RLREMRLKNGYSQEEFAKKVGLKRTNIANYESGRNTPPSQILGKIAEGFNTSTDYLLGKT 71 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 S + + + ++ +++ + + RQ +I+L+RS++ +K+ Sbjct: 72 DNPESLKVRDLDAISIDDLQNFKIEY--RGVELTEDEKRQ-VIKLLRSVLELKKE 123 >gi|24378729|ref|NP_720684.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|24376595|gb|AAN57990.1|AE014871_15 putative transcriptional regulator [Streptococcus mutans UA159] Length = 117 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ G++Q+++ E L I Q ++E G + ++ L ++ + Sbjct: 4 ERLKSLRLEAGLTQKQIAEKLEIKQQSYAQWESGRTKPRSATLNKFADFFGVTTDYLLGK 63 Query: 77 SPTVCSDISSEENN 90 + EE Sbjct: 64 TNIKKEIPEGEELE 77 >gi|332716117|ref|YP_004443583.1| aldehyde dehydrogenase-like protein [Agrobacterium sp. H13-3] gi|325062802|gb|ADY66492.1| aldehyde dehydrogenase-like protein [Agrobacterium sp. H13-3] Length = 182 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 35/84 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L G+T + E + L+ I + + + Sbjct: 1 MSVDIGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILDGIPIGL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF P + +++ Sbjct: 61 AEFFAYEPETSRKAFYRADELVEI 84 >gi|295107669|emb|CBL05212.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 137 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 6/132 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+ IR R GM+Q +L E +G+T V+ YE G+ V L+ I++ L ++ Sbjct: 1 MSVGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRTVKPELLESIADTLGVSVNA 60 Query: 73 FFDVSPTVCSDISS-----EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS-I 126 D D+ S E++ + S GL LN + ++ R+ + Sbjct: 61 LKDYGVETAGDLMSLLVRLEDSFGIAPASDGSGLTLNPNAPHAPKAAMAIELWAEKRAQL 120 Query: 127 VSSEKKYRTIEE 138 E R E+ Sbjct: 121 EDGEIGAREYED 132 >gi|260426660|ref|ZP_05780639.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260421152|gb|EEX14403.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 215 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 2/74 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G + P+D +G R+R R + E+ + G+ + K E G L+ Sbjct: 24 TGEDAMAEPLD--LGARVRELRKERDWTLEQAAKQAGLARSTLSKIENGQMSPTYDALKK 81 Query: 62 ISEVLESPISFFFD 75 ++ L + F Sbjct: 82 LAVGLGIGVPQLFT 95 >gi|256839656|ref|ZP_05545165.1| transcriptional regulator [Parabacteroides sp. D13] gi|256738586|gb|EEU51911.1| transcriptional regulator [Parabacteroides sp. D13] Length = 130 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 10/129 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R G+ QE L + +G++ + YEK + + L+ I++ L+ PI + Sbjct: 12 GANLKRWREWRGIKQEVLADKIGVSQATLSGYEK-KDELEPEVLEKITKALDIPIEAITE 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 ++ +I S +T G N+ F I KI+EL ++ +E++ Sbjct: 71 LNEGALINIYSGT---WQDNATAAGSIQNQTFNPI------DKIVELYERLLKAEQEKVA 121 Query: 136 IEEECMVEQ 144 + E + ++ Sbjct: 122 MLHEIIKDK 130 >gi|227508229|ref|ZP_03938278.1| DNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192458|gb|EEI72525.1| DNA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 174 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R+ G SQ+++ + L +T Q + +E G +R L +S+V + P+ F Sbjct: 9 SQLKKARIRKGYSQQQVADKLRVTRQSISSWENGHSRPDLYNLTLLSKVYDEPLDNFVKD 68 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + I S+ + F + +L +ID Sbjct: 69 NHSFDLQIESDREEFLHFFNLLQQKEL-EKIKRID 102 >gi|167746452|ref|ZP_02418579.1| hypothetical protein ANACAC_01162 [Anaerostipes caccae DSM 14662] gi|167653412|gb|EDR97541.1| hypothetical protein ANACAC_01162 [Anaerostipes caccae DSM 14662] Length = 171 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G I L R G++Q +LGE +G+T + V ++E G + + + E E I+ Sbjct: 19 KKIGAFIALLRRERGITQAELGERIGVTNKTVSRWENGNYMPDIATMLSLCEEFEISINE 78 Query: 73 FFDVSPTVCSDISSEENNV 91 + + + Sbjct: 79 LLSGQRLGSDEFRKKADEN 97 >gi|328475511|gb|EGF46270.1| transcription regulator [Listeria monocytogenes 220] Length = 180 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD I E + Sbjct: 61 FFDEEEHNQKVIYRELEH 78 >gi|314937222|ref|ZP_07844567.1| transcriptional Regulator of molybdate metabolism, XRE family [Staphylococcus hominis subsp. hominis C80] gi|313654655|gb|EFS18402.1| transcriptional Regulator of molybdate metabolism, XRE family [Staphylococcus hominis subsp. hominis C80] Length = 87 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R L +SQ++L + + +T Q V E G + I++ L+ ++ F Sbjct: 22 NNIKYYRKELKISQQELADRVEVTRQTVSLIELGKYNPTINLCIRIAKALDVDLNKLF 79 >gi|295107201|emb|CBL04744.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 148 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 R G++QE+L + L IT Q V ++E G G + I+ L+ PI+ ++ Sbjct: 9 ELRRERGLTQEQLAKRLYITRQAVSRWETGETTPGIDMTKLIARELDVPITELLEMPD 66 >gi|257468157|ref|ZP_05632253.1| SOS-response transcriptional repressor [Fusobacterium ulcerans ATCC 49185] gi|317062443|ref|ZP_07926928.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688119|gb|EFS24954.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 205 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I L R M+Q++L E L I+ Q + YE + L +I+++ PI FF Sbjct: 4 LGQKIMLLRKKENMTQDELAEKLNISKQSILNYETEKRLIPIDVLSNIAKLFNFPIENFF 63 Query: 75 D 75 Sbjct: 64 S 64 >gi|241888705|ref|ZP_04776012.1| helix-turn-helix domain protein [Gemella haemolysans ATCC 10379] gi|241864728|gb|EER69103.1| helix-turn-helix domain protein [Gemella haemolysans ATCC 10379] Length = 349 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 56/132 (42%), Gaps = 9/132 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG+RIR R+ G + +K G+ G + +Q +E G RL +IS++ ++ Sbjct: 8 IAVGQRIRQIRINGGYTYDKFGDFFGASRGNIQAWEYGKALPNKERLANISKMAGITVNE 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 S + + E + L+ + +++ ++ + ++ + K+ Sbjct: 68 LLHGSIDEFLENNIEVLLTNSKYPFKEILE---------NYNLKEAVLIYIDNLNTVNKE 118 Query: 133 YRTIEEECMVEQ 144 TI E +E+ Sbjct: 119 KITINEIDKIEK 130 >gi|258513519|ref|YP_003189741.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257777224|gb|ACV61118.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 141 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 48/132 (36%), Gaps = 16/132 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKR+ R +Q++L + +G++ + E+G+ L +I++ + + Sbjct: 10 ELGKRVAEIRGKN--TQKELAKAIGVSRSYIGNIEQGITVPSLEVLINIAQQYHVSLDWL 67 Query: 74 FDV--SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID------------DVKVRQKI 119 + + + + ++ DF + + F ++ + Sbjct: 68 VYGNTNSSPVAGATGYQHKSPDFFLRRQATAVEQNFSSAAFPPKILKQFKNLTPNNQRLV 127 Query: 120 IELVRSIVSSEK 131 E ++ + EK Sbjct: 128 FEFIKMLTMYEK 139 >gi|222152205|ref|YP_002561380.1| DNA-binding protein [Streptococcus uberis 0140J] gi|222113016|emb|CAR40321.1| putative DNA-binding protein [Streptococcus uberis 0140J] Length = 135 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 45/107 (42%), Gaps = 1/107 (0%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R +SQE L E L I+ Q + K+E G L ++E+ + + Sbjct: 6 SQLKILRQAKNLSQEALAEQLFISRQAISKWENGDATPDLENLVKLAEIFKVSLDELVLG 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + E++ + ++ + + LN + + +I+++ Sbjct: 66 KKIDSNQDDEEDDENLHLLTNREYV-LNPETGRYEKRDGLTILIDII 111 >gi|199597611|ref|ZP_03211039.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|258509756|ref|YP_003172507.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|199591418|gb|EDY99496.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|257149683|emb|CAR88656.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG] gi|259651020|dbj|BAI43182.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 189 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 32/72 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R+ ++Q ++ L ++ + V +E G ++ + +++ + + Sbjct: 6 LGNHLKALRLTRQLTQAQVAHQLFVSRKTVSTWETGRHQPDLQTVCQLADFYQITVDELL 65 Query: 75 DVSPTVCSDISS 86 P+ + +S Sbjct: 66 RPVPSKATKKTS 77 >gi|160873452|ref|YP_001552768.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|160858974|gb|ABX47508.1| transcriptional regulator, XRE family [Shewanella baltica OS195] gi|315265681|gb|ADT92534.1| helix-turn-helix domain protein [Shewanella baltica OS678] Length = 191 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 5/134 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K + G++ + + E+G + + L I+ + Sbjct: 4 INSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S F + +P + + + + +T L + + R +++ + Sbjct: 64 STFLEPTPQSQGAVFRKPDELRQQPATDGML-----VASLFPFEDRFGFEMFELTLLPNY 118 Query: 131 KKYRTIEEECMVEQ 144 ++ E + E Sbjct: 119 ERLSEPHEAGVTEH 132 >gi|325263097|ref|ZP_08129832.1| DNA-binding protein [Clostridium sp. D5] gi|324031490|gb|EGB92770.1| DNA-binding protein [Clostridium sp. D5] Length = 157 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I R ++QE+L E L ++ Q + K+E G +L +S V + + Sbjct: 1 MEISEKILQLRKANNLTQEELAEKLNVSRQSISKWESGQTIPELEKLISLSSVFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 S I +E Sbjct: 61 LLKPSELDELSIKTEILEKKQQELEK 86 >gi|312794245|ref|YP_004027168.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181385|gb|ADQ41555.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 129 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 2/105 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R++ R + G+S KL + + + E G L+ I L ++ FF Sbjct: 19 VGRRVKELRELRGLSMTKLSKIARVGQSTLSYIESGRQSPTVDVLERICSALGITLAEFF 78 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 SP + D+ ++ ++ + Y + ++K+ Sbjct: 79 --SPVIKDDLRDPLIQQLEVYASKLSKKELEYLCGFLEEISKEKV 121 >gi|229000727|ref|ZP_04160239.1| hypothetical protein bmyco0003_52430 [Bacillus mycoides Rock3-17] gi|228759027|gb|EEM08061.1| hypothetical protein bmyco0003_52430 [Bacillus mycoides Rock3-17] Length = 145 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++N+G +++ R SQE + +G+T Q V K+E + L +SE+ E I Sbjct: 3 NMNLGSQLKKFRESKNFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTID 62 Query: 72 FFFDVSPTVCSDI 84 S V ++ Sbjct: 63 ELIKGSEDVRGEL 75 >gi|169347272|ref|ZP_02866211.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169296668|gb|EDS78799.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] Length = 433 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ ++L IT Q+ E G + L++I+ L + + + Sbjct: 6 LGEKIKRRRKELNMTLKELAGE-RITPGQISLVESGRSNPSMDLLEYIAITLNTSVEYLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF--IQIDDVKVRQKIIELVRSIVSSEKK 132 + T I + + D ++ F I I +++ + Sbjct: 65 ETEKTQAEKICLYYEQIAESAILNDDIKKGEKFIEYAIYYADKYDLIYRKAKNLALKAEM 124 Query: 133 YRTIEEECMVEQ 144 Y EE + +Q Sbjct: 125 YLKSEEYLLAQQ 136 >gi|154482433|ref|ZP_02024881.1| hypothetical protein EUBVEN_00100 [Eubacterium ventriosum ATCC 27560] gi|149736710|gb|EDM52596.1| hypothetical protein EUBVEN_00100 [Eubacterium ventriosum ATCC 27560] Length = 195 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 36/77 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R L +SQ++L E + ++ Q + +E + + L +SEV ++ I Sbjct: 1 MELGNQIKKYRSELQLSQDQLAEHIYVSRQTISNWENEKSYPDVNSLVLLSEVFKTSIDN 60 Query: 73 FFDVSPTVCSDISSEEN 89 + +E+ Sbjct: 61 LIKGDIENMKEKINEQE 77 >gi|153814064|ref|ZP_01966732.1| hypothetical protein RUMTOR_00272 [Ruminococcus torques ATCC 27756] gi|317499821|ref|ZP_07958059.1| hypothetical protein HMPREF1026_00001 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087904|ref|ZP_08336828.1| hypothetical protein HMPREF1025_00411 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848460|gb|EDK25378.1| hypothetical protein RUMTOR_00272 [Ruminococcus torques ATCC 27756] gi|316898723|gb|EFV20756.1| hypothetical protein HMPREF1026_00001 [Lachnospiraceae bacterium 8_1_57FAA] gi|330409391|gb|EGG88837.1| hypothetical protein HMPREF1025_00411 [Lachnospiraceae bacterium 3_1_46FAA] Length = 194 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 1/93 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ R +SQE+L + ++ Q + +E + L +S + + Sbjct: 1 MDIGLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDIKSLITLSNIFNVSLDN 60 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + + + + IS ++L Sbjct: 61 FIKEDIKEMKEIVEKATIKKFNVISVVFLIELI 93 >gi|94988166|ref|YP_596267.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] gi|94993958|ref|YP_602056.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10750] gi|94541674|gb|ABF31723.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] gi|94547466|gb|ABF37512.1| phage transcriptional repressor [Streptococcus pyogenes MGAS10750] Length = 249 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 52/122 (42%), Gaps = 12/122 (9%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFFFDVS 77 ++ R+ ++ E+L E LG T + K+EKG ++ I++ P F + Sbjct: 11 VKELRLGKNLTMEQLAEELGKTKSTISKWEKGTRSPKIYEIEEIAKFFGVEPKKMMFGDN 70 Query: 78 PTVCSDISSEENNVMDFI-STPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 PT + + + I ST L+ +R I +++ +++ +K+ + Sbjct: 71 PTSINPQVELIPSTLQKINSTSSQLEHSRQII----------VLDTAETLLEQQKEIKNN 120 Query: 137 EE 138 E+ Sbjct: 121 ED 122 >gi|332361288|gb|EGJ39092.1| phage transcriptional repressor [Streptococcus sanguinis SK1056] Length = 230 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ RM SQ +L L I K+E G + L ++ +L+ P ++F Sbjct: 4 GSRLKECRMEKHYSQSELANLLKINRASYNKWETGKSVPNQKNLSALARILDVPTTYF 61 >gi|300702662|ref|YP_003744262.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299070323|emb|CBJ41615.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 209 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 32/103 (31%), Gaps = 5/103 (4%) Query: 1 MVGNKKIPNP-----VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 M P+ V+ + +R+R R G + + L G++ + E+G Sbjct: 1 MQETAAPPSDDTDAGVNERIARRVRELRATRGYTLDALAARCGVSRSMISLIERGAASPT 60 Query: 56 ASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 A+ L ++ L ++ F P Sbjct: 61 AAVLDKLAAGLGVSLASLFGGEREGLPAQPLMRRAQQTQWRDP 103 >gi|295399294|ref|ZP_06809276.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294978760|gb|EFG54356.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 113 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+R++L R G+SQ+++ E +GI + YE G R L ++++ E + + Sbjct: 1 MDLGERLKLCREKKGLSQKEVAEKIGIKNNTLSNYESGERRPDYETLCKLADLYEVSLDY 60 Query: 73 FFDVSPTVCSDISSE 87 + Sbjct: 61 LIKGQEHKEEKENKN 75 >gi|94990056|ref|YP_598156.1| Cro/CI family transcriptional regulator [Streptococcus phage 10270.1] gi|94990314|ref|YP_598414.1| Cro/CI family transcriptional regulator [Streptococcus phage 10270.2] gi|94994236|ref|YP_602334.1| Cro/CI family transcriptional regulator [Streptococcus phage 10750.2] gi|94543564|gb|ABF33612.1| Transcriptional regulator, Cro/CI family [Streptococcus phage 10270.1] gi|94543822|gb|ABF33870.1| Transcriptional regulator, Cro/CI family [Streptococcus phage 10270.2] gi|94547744|gb|ABF37790.1| Transcriptional regulator, Cro/CI family [Streptococcus phage 10750.2] Length = 104 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G++Q+ L E + + ++ +Q++E +++ + Q +++ + +++ Sbjct: 2 NRIKELRKEKGLTQQDLAEEIYVHYRTIQRWE-NKHKIALDQAQLLADYFDVSVAYLLGY 60 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN 104 S T + +V ++ + Sbjct: 61 SDTTKDNKDFITISVKEYNELKKRSDVL 88 >gi|91787958|ref|YP_548910.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91697183|gb|ABE44012.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 207 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 38/98 (38%), Gaps = 5/98 (5%) Query: 1 MVGNK-----KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 M+ N + ++ + +R+R R +S + L G++ + E+G + Sbjct: 1 MMENNSTMREQKSASLNDRIAQRVRDLRAARSLSLDALATHCGVSRSMISLIERGESSPT 60 Query: 56 ASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 A L+ ++ L P++ F+ ++ + Sbjct: 61 AVLLEKLATGLNVPLASLFEAPQPTKDPVARLADQPSW 98 >gi|332653789|ref|ZP_08419533.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332516875|gb|EGJ46480.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 182 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + ++ R G+SQE+L L I Q V K+EKG++ + L ++E L++ ++ Sbjct: 1 MLSENLKHFRKAKGLSQEELAIKLHIVRQTVSKWEKGLSVPDSGMLIRLAEALDTSVTAL 60 Query: 74 FDVSPTVCSDISSEEN 89 Sbjct: 61 LGEMAGSEPASGESAE 76 >gi|254440856|ref|ZP_05054349.1| hypothetical protein OA307_271 [Octadecabacter antarcticus 307] gi|198250934|gb|EDY75249.1| hypothetical protein OA307_271 [Octadecabacter antarcticus 307] Length = 78 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Query: 52 NRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 NRV ASRL I+ L ++FFF+ D +S + L L R + I Sbjct: 2 NRVSASRLWGIAHALGVEVAFFFEGLDGDLIG-KDLGGMPSDILSDKEALDLLRSYYAIP 60 Query: 112 DVKVRQKIIELVRSIVSS 129 + + R+++ +L R + + Sbjct: 61 EHQ-RRRLFDLARVLSEA 77 >gi|312977307|ref|ZP_07789055.1| putative Ans operon transcriptional repressor [Lactobacillus crispatus CTV-05] gi|310895738|gb|EFQ44804.1| putative Ans operon transcriptional repressor [Lactobacillus crispatus CTV-05] Length = 111 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 50/114 (43%), Gaps = 8/114 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R +G S+ KL + +G+ +E G+ + ++ I E L D+ Sbjct: 6 SKLKYERERMGWSKTKLAKYVGVGLSTYANWEYGIAEPDIATIKKICEALGISSDVLLDL 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S + +S+ + ++D + DG ++ D R+ + +++ I S + Sbjct: 66 SVQNAASSTSDLDEMLDDARSFDG--------KLLDEHDRELVRGILKRIYSEK 111 >gi|309778298|ref|ZP_07673226.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] gi|308913930|gb|EFP59742.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] Length = 373 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 7/117 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++GK++ R M+QE+L +G++ V K+E L ++ + + Sbjct: 10 IHLGKKLISLRREANMTQEELATYMGVSKSSVSKWETETTLPDILLLPQLATLFNVSVDE 69 Query: 73 FFDVSPTVCSDISSE-------ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 P + +E E + + +L R + ++ ++ L Sbjct: 70 LIGYEPQLSMKAVNEFYIQLSTEWSQDAGKAYEHSEELIRKYYSCFPFLLQMAVLYL 126 >gi|297528604|ref|YP_003669879.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|297251856|gb|ADI25302.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] Length = 148 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 36/86 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R+ R G++QE+LG + +T + YE G L+ +++ L+ I + Sbjct: 5 QRLRMLRKAKGLTQEELGRKVNVTKVSISGYESGNRTPDMDTLKALADALDVSIDYLLGR 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 T +D D L+ Sbjct: 65 DNTQPTDTKLPALTEKDERDIQKELE 90 >gi|266622984|ref|ZP_06115919.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288865257|gb|EFC97555.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 365 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 29/59 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RI R M+Q +L E LGI+ Q V K+E G++ L +S+VL Sbjct: 33 GERITYLRKRKKMTQAQLAEQLGISAQAVSKWESGLSCPDIMTLVPLSQVLGVSTDELL 91 >gi|210621011|ref|ZP_03292396.1| hypothetical protein CLOHIR_00339 [Clostridium hiranonis DSM 13275] gi|210154995|gb|EEA86001.1| hypothetical protein CLOHIR_00339 [Clostridium hiranonis DSM 13275] Length = 214 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G ++ N D R++ R +QE +G+ L +T YE+G N+ LQ Sbjct: 3 MKGVVEMANLQD-----RLKSLRKENKYTQEDIGKFLNMTTSGYGYYEQGKNKPPLEILQ 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEEN 89 ++ + + + + +N Sbjct: 58 KLASLYSVSLDYLLGNDDVRLKNEIKIDN 86 >gi|172064748|ref|YP_001812398.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171998233|gb|ACB69149.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 115 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 46/116 (39%), Gaps = 3/116 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +++ P+ + +R+R R + SQ +L E + + +E G + L+ Sbjct: 1 MTDERTPSDLFQ---ERLRAARELRKWSQGELAEKASMPPSSIAHFESGSRKPSFDTLRR 57 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++ LE + +++ T + +L + F+++ + +Q Sbjct: 58 LANALEVTTDYLLGRVDDPTMAQAADPLFRDVSKLTGNDRELAKDFLKMLAERNKQ 113 >gi|154496484|ref|ZP_02035180.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC 29799] gi|150274567|gb|EDN01644.1| hypothetical protein BACCAP_00776 [Bacteroides capillosus ATCC 29799] Length = 360 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + IR+ R G++QE+L E +GIT V K+E G S + ++E E+ + Sbjct: 5 LAENIRMLRKERGLTQEQLAEAMGITVGTVSKWETGSCVPDVSLMMELAEFFETSVDVLL 64 >gi|148272408|ref|YP_001221969.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830338|emb|CAN01272.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 209 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 33/80 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V +RIR R G S + L ++ + + E G R+ +L I++ LE+ Sbjct: 6 DLDALVRQRIRSLREARGWSLDALAARCFLSPSTLSRIETGHRRIALDQLVPIAQALETS 65 Query: 70 ISFFFDVSPTVCSDISSEEN 89 + + I + + Sbjct: 66 LDALIESGDDADVVIRPQAD 85 >gi|56808631|ref|ZP_00366358.1| COG1396: Predicted transcriptional regulators [Streptococcus pyogenes M49 591] Length = 195 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 35/92 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE+L E + ++ Q + +E L +S++ + ++ Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLNQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + T + L Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTKVMVTLM 92 >gi|329725199|gb|EGG61688.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21172] Length = 179 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 36/81 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF+ S EE + D Sbjct: 61 FFEDSENEKVLYKKEEQVIYD 81 >gi|327402685|ref|YP_004343523.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327318193|gb|AEA42685.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 86 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 30/83 (36%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N D G+ I+ +R L +Q L E + FQ + + E+G + +++ Sbjct: 4 NEFDSLFGEFIKQKRKSLNWTQNDLAEKINNDFQNISRLERGEVSPSIFWISELAKGFGC 63 Query: 69 PISFFFDVSPTVCSDISSEENNV 91 + S+I + Sbjct: 64 SLGELMTEFDAFVSNIQKIPSKH 86 >gi|322384426|ref|ZP_08058110.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150734|gb|EFX44196.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 151 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 10/124 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+RIR RR +L ++Q ++ E L + E G +S LQ I+++L++ + Sbjct: 1 MSIGERIRQRRKLLQITQLEIAEQLKMGRSNFGHIENGRVTPSSSDLQKIADILQTNADY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD----------VKVRQKIIEL 122 + ++ +T + + +Q D + R K++ + Sbjct: 61 LLGRTDDPSPQGAAAGLKTYPEWATSKDKRDLKKMLQSPDVLYFDGIEFSDEDRAKMLGV 120 Query: 123 VRSI 126 + +I Sbjct: 121 METI 124 >gi|300908619|ref|ZP_07126082.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] gi|300894026|gb|EFK87384.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 207 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 29/74 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R G +Q+ + E L I+ + + +E + L IS++ + Sbjct: 6 KMKLYRYQKGWTQQDVAERLLISRKTISSWENSRSYPDIFMLVQISDLYHVSLDDLLRED 65 Query: 78 PTVCSDISSEENNV 91 + ++ E Sbjct: 66 HEMINNYKEEHTMN 79 >gi|269217813|ref|ZP_06161667.1| conserved domain protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269212748|gb|EEZ79088.1| conserved domain protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 122 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D V R+ + R G+++ KL E LGI +Q + E+G I+ P+ Sbjct: 51 DERVHNRLAVLRAARGVTRRKLAEELGIHYQTMGYLERGEYAPSLHLALRIARWFGVPVE 110 Query: 72 FFFDVSP 78 F + Sbjct: 111 SVFSLDE 117 >gi|168178240|ref|ZP_02612904.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182670949|gb|EDT82923.1| DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 381 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 25/139 (17%), Positives = 55/139 (39%), Gaps = 13/139 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I +R G++QE+L +G++ V K+E G + L ++ + Sbjct: 6 IGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDIVLLPELATYFNISVDELL 65 Query: 75 DVSPTVCSD--------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL---V 123 SP + + +S E +L + + + II+L Sbjct: 66 GYSPQLTKEDIGKIYSKLSHEFAVKPFDEVMEQCNKLIKKYYSCFPFLL--SIIQLLLNY 123 Query: 124 RSIVSSEKKYRTIEEECMV 142 S++ ++ + I ++C++ Sbjct: 124 SSLIKNDAIKKEIFQQCIL 142 >gi|118478614|ref|YP_895765.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118417839|gb|ABK86258.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] Length = 374 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 P + + E + + + ++ + + + ++ I+ + Sbjct: 64 LISYKPQMEQEDIKELYHRLAEAFSEKSFDEVMMECREIIKKYYSCFPLLIQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K I EE + Sbjct: 124 HMLTEDTDKRIEILEEAI 141 >gi|24380369|ref|NP_722324.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|24378389|gb|AAN59630.1|AE015025_2 putative transcriptional regulator [Streptococcus mutans UA159] Length = 228 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR LG+SQ + + LGI+ +E G + L ++ +L+ ++F Sbjct: 5 QKLKERRKKLGLSQAQTADKLGISRPSYFNWEIGKTKPNQKNLDKLAHLLKVDSAYFLSQ 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 V E+N + L Sbjct: 65 HDIVEIYTRLNESNKTKTLKYSQYL 89 >gi|62317249|ref|YP_223102.1| transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|83269230|ref|YP_418521.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189022510|ref|YP_001932251.1| Helix-turn-helix motif [Brucella abortus S19] gi|237816809|ref|ZP_04595801.1| transcriptional regulator [Brucella abortus str. 2308 A] gi|254690756|ref|ZP_05154010.1| Helix-turn-helix motif [Brucella abortus bv. 6 str. 870] gi|254698535|ref|ZP_05160363.1| Helix-turn-helix motif [Brucella abortus bv. 2 str. 86/8/59] gi|254731982|ref|ZP_05190560.1| Helix-turn-helix motif [Brucella abortus bv. 4 str. 292] gi|256255939|ref|ZP_05461475.1| Helix-turn-helix motif [Brucella abortus bv. 9 str. C68] gi|260544487|ref|ZP_05820308.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260756327|ref|ZP_05868675.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260759755|ref|ZP_05872103.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260762994|ref|ZP_05875326.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260882151|ref|ZP_05893765.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|297249296|ref|ZP_06932997.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|62197442|gb|AAX75741.1| transcriptional regulator, hypothetical [Brucella abortus bv. 1 str. 9-941] gi|82939504|emb|CAJ12476.1| Helix-turn-helix motif:Cupin domain [Brucella melitensis biovar Abortus 2308] gi|189021084|gb|ACD73805.1| Helix-turn-helix motif [Brucella abortus S19] gi|237787622|gb|EEP61838.1| transcriptional regulator [Brucella abortus str. 2308 A] gi|260097758|gb|EEW81632.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260670073|gb|EEX57013.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260673415|gb|EEX60236.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260676435|gb|EEX63256.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260871679|gb|EEX78748.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|297173165|gb|EFH32529.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella abortus bv. 5 str. B3196] Length = 182 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ + + G+T + E + L+ I + + + Sbjct: 1 MSIDIGGRLRYVRMRQNLSQREFAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGM 60 Query: 71 SFFFDVSPTVC 81 + FF + P Sbjct: 61 AEFFALEPDAP 71 >gi|332653329|ref|ZP_08419074.1| putative helix-turn-helix domain containing protein [Ruminococcaceae bacterium D16] gi|332518475|gb|EGJ48078.1| putative helix-turn-helix domain containing protein [Ruminococcaceae bacterium D16] Length = 194 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G++Q +L + L ++ + V K+E+G S L +++ L + Sbjct: 6 IGALIRSLRTQQGLTQRELAQRLTVSDKAVSKWERGQGCPDVSLLPSLAQTLGVEVEGLL 65 Query: 75 DVS 77 Sbjct: 66 AGE 68 >gi|325661078|ref|ZP_08149705.1| hypothetical protein HMPREF0490_00438 [Lachnospiraceae bacterium 4_1_37FAA] gi|331085193|ref|ZP_08334279.1| hypothetical protein HMPREF0987_00582 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325472585|gb|EGC75796.1| hypothetical protein HMPREF0490_00438 [Lachnospiraceae bacterium 4_1_37FAA] gi|330407976|gb|EGG87466.1| hypothetical protein HMPREF0987_00582 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 195 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 30/74 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ R +SQE+L + ++ Q + +E + L +S + + Sbjct: 1 MDIGLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDVKSLISLSNIFNVSLDN 60 Query: 73 FFDVSPTVCSDISS 86 F +I Sbjct: 61 FIKEDIKEMREIVE 74 >gi|317490219|ref|ZP_07948707.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA] gi|316910713|gb|EFV32334.1| hypothetical protein HMPREF1023_02407 [Eggerthella sp. 1_3_56FAA] Length = 71 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + I +G+R+R R ++QE+L G+ + K E G ++ ++ L Sbjct: 1 MTRATRILLGQRVRALREESNLTQEQLALMTGVGRSYLAKVEAGNRNATIDFMEKVALGL 60 Query: 67 ESPISFFFDV 76 + F+ Sbjct: 61 GVTLGQLFEG 70 >gi|300172366|ref|YP_003771531.1| Cro/CI family transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299886744|emb|CBL90712.1| transcriptional regulator, Cro/CI family [Leuconostoc gasicomitatum LMG 18811] Length = 196 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R SQE+L E ++ Q + +E + L +S V + + Sbjct: 1 MELGKQIKNYRTTFNYSQEQLAEKTFVSRQTISNWETNKSYPDIQSLLLLSSVFGTSLDE 60 Query: 73 FFDVS 77 Sbjct: 61 LVKGD 65 >gi|259416828|ref|ZP_05740748.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259348267|gb|EEW60044.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 216 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 8/136 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + +G+R++ R GM+ E+ E G+ + K E G L ++ + Sbjct: 28 IRLELGRRVKGLRSSAGMTLEQAAERTGLAVSTIYKIENGKVSPSFENLLRLARGYGVGL 87 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S S + + + +KII L+ +I ++ Sbjct: 88 EKLIAEPEDEVSTTRLTVTRAGQGRSVEGK---VYEYEVLCNGLTGKKIIPLIGTISAAG 144 Query: 131 KK-----YRTIEEECM 141 R EE + Sbjct: 145 DSVPAHLDRHDGEELL 160 >gi|227873927|ref|ZP_03992147.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840233|gb|EEJ50643.1| transcriptional regulator [Oribacterium sinus F0268] Length = 191 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+I+ R ++Q+ L E + ++ Q + +E + + + +SEVLE + Sbjct: 4 GKKIKYYRNEKSLTQDNLAERIFVSRQTISNWENDKSYPDINSIILLSEVLEVSVDNLIK 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQL 103 + E + + L L Sbjct: 64 GDVEQMKLEINSEEVKRMKLYSLMMLIL 91 >gi|297190678|ref|ZP_06908076.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719901|gb|EDY63809.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 202 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 6/111 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R+R R G++ L G++ + + E G R L ++ + + Sbjct: 7 DEVLGAVGPRLRALRRDRGITLADLAATTGVSESTLSRLESGQRRPSLELLLPLARIYDV 66 Query: 69 PISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 P+ P + +S G F I + Sbjct: 67 PLDDLVGAPRTGDPRIHLKPIRRFGMTFVPLSRRPGG--VHAFKMIIPAQP 115 >gi|167768231|ref|ZP_02440284.1| hypothetical protein CLOSS21_02787 [Clostridium sp. SS2/1] gi|317497813|ref|ZP_07956125.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167709755|gb|EDS20334.1| hypothetical protein CLOSS21_02787 [Clostridium sp. SS2/1] gi|291560246|emb|CBL39046.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] gi|316894926|gb|EFV17096.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 115 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 10/114 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKRI+L R ++QE L E G++ + + E G + ++ L+ + Sbjct: 6 KELGKRIKLTRKGQDLTQEMLAEKAGVSQHYIYEIEAGRKAMSIHSFASLTTALDVSADY 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 D+ + ++ + L + R ++E++ + Sbjct: 66 LLFGDGQRIFDVDTPAHHNNQLMEIAAEL----------NPSQRDHVLEILEVM 109 >gi|329941606|ref|ZP_08290871.1| regulatory protein [Streptomyces griseoaurantiacus M045] gi|329299323|gb|EGG43223.1| regulatory protein [Streptomyces griseoaurantiacus M045] Length = 229 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 6/113 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R+R R G + L E GI+ + + E G+ + L I+ + Sbjct: 42 DEVLAEVGPRLRRIRKERGATLAALSEATGISVSTLSRLESGLRKPSLELLLPIARAHQV 101 Query: 69 PISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 P+ P V ++ + ++ G + F ++ + + Sbjct: 102 PLDELVGAPRVGDPRVRAEPIARFGRTYWPLTRQPGG--LQAFKVLEPQRASE 152 >gi|330821781|ref|YP_004350643.1| transcriptional regulator, XRE family [Burkholderia gladioli BSR3] gi|327373776|gb|AEA65131.1| transcriptional regulator, XRE family [Burkholderia gladioli BSR3] Length = 186 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 4/99 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R+R R G S E L E G++ + E+G + A L ++ L P+S F Sbjct: 7 IAERLRALRDARGWSLETLAEHSGVSRSNISLIERGQSSPTAVVLDKLATALAVPLSSLF 66 Query: 75 DVSPTVCSDI----SSEENNVMDFISTPDGLQLNRYFIQ 109 S + ++++ D S QL+ Sbjct: 67 GESGESEAPSPIARAADQPLWTDPASGYQRRQLSPALRS 105 >gi|289522427|ref|ZP_06439281.1| LexA repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504263|gb|EFD25427.1| LexA repressor [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 216 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 37/83 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RIR R + M+ +L + + + + E+G + L I++ L++ I + Sbjct: 1 MLGERIRTLRKKMRMTATELARRVKTSPSHISEIERGEKTPSLNLLVKIAKELQTSIDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFIS 96 + ++ E ++D S Sbjct: 61 TGLEGFSKKALNVTEVALLDQAS 83 >gi|257886679|ref|ZP_05666332.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,141,733] gi|257895254|ref|ZP_05674907.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|257897876|ref|ZP_05677529.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com15] gi|257822733|gb|EEV49665.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium 1,141,733] gi|257831819|gb|EEV58240.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|257835788|gb|EEV60862.1| cupin/helix-turn-helix domain-containing protein [Enterococcus faecium Com15] Length = 180 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 39/82 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEE 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 FF + S+E++ + F Sbjct: 61 FFHQEAANLQVVYSKEDHTVYF 82 >gi|237733314|ref|ZP_04563795.1| predicted protein [Mollicutes bacterium D7] gi|229383695|gb|EEO33786.1| predicted protein [Coprobacillus sp. D7] Length = 297 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++ +R R G SQE+L E L ++ Q V K+E L +S++ E I Sbjct: 5 IKMSLSDNLRALRKQKGYSQEQLAERLNVSRQAVSKWESDNGYPEMESLIILSDLFECTI 64 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTP 98 T + + + + + Sbjct: 65 DDLLKNDLTQHNPTAKQAYDKHYSLIAK 92 >gi|257413803|ref|ZP_04744284.2| transcriptional regulator, Cro/CI family [Roseburia intestinalis L1-82] gi|257202203|gb|EEV00488.1| transcriptional regulator, Cro/CI family [Roseburia intestinalis L1-82] gi|291538784|emb|CBL11895.1| Uncharacterized conserved protein, contains double-stranded beta-helix domain [Roseburia intestinalis XB6B4] Length = 183 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 36/78 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +++GKR++ R+ G++Q++L + +T + + E+ N L I + L + Sbjct: 3 VRMDIGKRMKELRIQYGLTQQELADRSELTKGFISQLERNQNSPSIGTLLDIIQCLGTTP 62 Query: 71 SFFFDVSPTVCSDISSEE 88 + FF ++ Sbjct: 63 AEFFTDEEPEQIVFEKDD 80 >gi|83952999|ref|ZP_00961721.1| putative aldehyde dehydrogenase protein [Sulfitobacter sp. NAS-14.1] gi|83841967|gb|EAP81135.1| putative aldehyde dehydrogenase protein [Sulfitobacter sp. NAS-14.1] Length = 183 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+R+R R G+SQ +L G+T + EK + L+ + + + ++ Sbjct: 1 MDIGQRLRSIREERGLSQRELATKAGLTNGTISLIEKNKTSPSVASLKSLLDAIPISMAE 60 Query: 73 FFDVSPTVCSD 83 FF S Sbjct: 61 FFSTLEDTQSP 71 >gi|332716566|ref|YP_004444032.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325063251|gb|ADY66941.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 225 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L G++ + K E G + LQ +S+ L Sbjct: 31 NNLEMAIGHEVRAYRKKLGITVTDLASATGVSVGMLSKIENGNISPSLTTLQTLSKALGV 90 Query: 69 PISFFFDVSPTVCSDI 84 PI+ FF S Sbjct: 91 PITAFFRGFEEPRSAT 106 >gi|159186071|ref|NP_356428.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159141205|gb|AAK89213.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 208 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L G++ + K E G + LQ +S+ L Sbjct: 14 NNLEMAIGHEVRAYRKKLGITVTDLASATGVSVGMLSKIENGNISPSLTTLQTLSKALGV 73 Query: 69 PISFFFDVSPTVCSDI 84 PI+ FF S Sbjct: 74 PITAFFRGFEEPRSAT 89 >gi|157693531|ref|YP_001487993.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157682289|gb|ABV63433.1| possible transcriptional regulator [Bacillus pumilus SAFR-032] Length = 125 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 10/130 (7%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D GK + R G S+ + + LG+ +E G+ + + I+E+ Sbjct: 1 MDNLTGKILTELREKHGWSKSTVAKKLGLKAMSTYANWEYGLRKPDGEMIVKIAELYGVS 60 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + +D+ ++ LQ+ + R++ I+ + I Sbjct: 61 TDYLLTGKDKGGTDVD---------LADDPDLQIAFKAASDFSEEARRQTIDFIHYIKEK 111 Query: 130 EKKYRTIEEE 139 EK+ ++ Sbjct: 112 EKQKGRQPKQ 121 >gi|332298423|ref|YP_004440345.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181526|gb|AEE17214.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 195 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R GM+Q++L + L ++ + V K+E G + L +S +L + + Sbjct: 7 GNLIARLRKERGMTQKQLADGLFVSDKAVSKWETGAGCPDVTLLSALSRILGVDTAALLN 66 Query: 76 VSPTVCS 82 Sbjct: 67 GDLEPND 73 >gi|315231266|ref|YP_004071702.1| HTH-type transcriptional regulator protein [Thermococcus barophilus MP] gi|315184294|gb|ADT84479.1| HTH-type transcriptional regulator protein [Thermococcus barophilus MP] Length = 65 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G++QE+L + LG+T Q + EKG I+ I F Sbjct: 3 NRLRELREARGLTQEELAKILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVKIEDIF 60 >gi|171320839|ref|ZP_02909842.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171093917|gb|EDT39035.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 183 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 37/96 (38%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + V +R+R R G+SQ +L + G+T + E+G L+ + E + + Sbjct: 1 MSTEVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + FF I S + + + + L Sbjct: 61 AEFFTFELVESRSIVSRRDEMPNLGNDTLAFHLVGA 96 >gi|153005820|ref|YP_001380145.1| hypothetical protein Anae109_2962 [Anaeromyxobacter sp. Fw109-5] gi|152029393|gb|ABS27161.1| protein of unknown function DUF955 [Anaeromyxobacter sp. Fw109-5] Length = 476 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 1/123 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G ++R R G++Q L E LGI+ + E + A L ++++L+ + Sbjct: 6 HLGAKVRSLRRQRGLTQAHLAERLGISASYLNLIEHNRRSLSAPLLIKLADILDLDLKAL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + E F + R ++ L ++ ++ + Sbjct: 66 SAENHARSVADLMEVFGDPIFDAHDVTNAEVHDLCAATPNAGR-AVLTLYQAYRAAREAA 124 Query: 134 RTI 136 T+ Sbjct: 125 DTL 127 >gi|53716415|ref|YP_105155.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121597232|ref|YP_991127.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124381577|ref|YP_001025521.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126442447|ref|YP_001064011.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126446100|ref|YP_001077587.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|126458019|ref|YP_001076933.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|167000254|ref|ZP_02266073.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167725174|ref|ZP_02408410.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|167744105|ref|ZP_02416879.1| DNA-binding protein [Burkholderia pseudomallei 14] gi|167821307|ref|ZP_02452987.1| DNA-binding protein [Burkholderia pseudomallei 91] gi|167829646|ref|ZP_02461117.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|167899756|ref|ZP_02487157.1| DNA-binding protein [Burkholderia pseudomallei 7894] gi|167908062|ref|ZP_02495267.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] gi|167916410|ref|ZP_02503501.1| DNA-binding protein [Burkholderia pseudomallei 112] gi|167924271|ref|ZP_02511362.1| DNA-binding protein [Burkholderia pseudomallei BCC215] gi|217424415|ref|ZP_03455914.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|226194042|ref|ZP_03789643.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|237509646|ref|ZP_04522361.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|238561521|ref|ZP_00441977.2| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|242313514|ref|ZP_04812531.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|254177387|ref|ZP_04884043.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254182642|ref|ZP_04889236.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254185685|ref|ZP_04892203.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254192472|ref|ZP_04898911.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|254203094|ref|ZP_04909456.1| DNA-binding protein [Burkholderia mallei FMH] gi|254208427|ref|ZP_04914776.1| DNA-binding protein [Burkholderia mallei JHU] gi|254296435|ref|ZP_04963891.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|52422385|gb|AAU45955.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121225030|gb|ABM48561.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126221938|gb|ABN85443.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126231787|gb|ABN95200.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|126238954|gb|ABO02066.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|147746139|gb|EDK53217.1| DNA-binding protein [Burkholderia mallei FMH] gi|147751114|gb|EDK58182.1| DNA-binding protein [Burkholderia mallei JHU] gi|157806343|gb|EDO83513.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|157933371|gb|EDO89041.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|160698427|gb|EDP88397.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|169649230|gb|EDS81923.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|184213177|gb|EDU10220.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|217392880|gb|EEC32903.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|225933987|gb|EEH29973.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|235001851|gb|EEP51275.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|238524516|gb|EEP87949.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|242136753|gb|EES23156.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|243063746|gb|EES45932.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|261826389|gb|ABN00454.2| DNA-binding protein [Burkholderia mallei NCTC 10229] Length = 179 Score = 50.2 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 51/132 (38%), Gaps = 9/132 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R L + ++ GI+ + + E+G+ + L I+ L + + Sbjct: 1 MALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F + S ++ F + F ++ +V +++ ++ + +K+ Sbjct: 61 FVETPSEERSVCRGDQLRFFSFADS------ANLFARLTNVPEGRQLEAILVRMPPGQKR 114 Query: 133 YR---TIEEECM 141 EE + Sbjct: 115 SEVTTHAGEEFL 126 >gi|332981126|ref|YP_004462567.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698804|gb|AEE95745.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 121 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 44/123 (35%), Gaps = 5/123 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R G++ LG+ ++ + E G + L +++ L I+ Sbjct: 4 IGAKLKSIRKQRGLTLRALGKAANVSHSFIADIESGRSNPSLDTLDALAKALNVSITDII 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + + + + + RQ I+E V++ + + Sbjct: 64 RDTDYENRQEAIDLAEAILEENVMFDGEPLSL-----TPEERQSILEFVKTAIKLINQKE 118 Query: 135 TIE 137 T E Sbjct: 119 TKE 121 >gi|310641032|ref|YP_003945790.1| DNA-binding protein [Paenibacillus polymyxa SC2] gi|309245982|gb|ADO55549.1| DNA-binding protein [Paenibacillus polymyxa SC2] Length = 182 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G + R G+S +K+ E G++ + + EKG + + L I+ L S F Sbjct: 8 IGSNLAQIRKTRGLSLDKVAELTGVSKGMLAQIEKGRSNPTVTTLWKIANGLHVSFSTFL 67 Query: 75 DVSPTVCSDISSEE 88 P + I + Sbjct: 68 KEDPPQITKIRRAD 81 >gi|296394319|ref|YP_003659203.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181466|gb|ADG98372.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 471 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 44/125 (35%), Gaps = 6/125 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R+ G+SQ L L I+ + + E V + L +SE L FF Sbjct: 7 GPRLRQLRVERGLSQVALAADLAISPSYLNQIEHDVRPLTVPLLVRLSETLGVDAEFFTA 66 Query: 76 VSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 E + +D + P+ + K + +++L ++ Sbjct: 67 QEEARLVAEIREVAMDTGIDIGAHPEAVTQVVSAH----PKFARAMLQLYHRYRELADQF 122 Query: 134 RTIEE 138 + E Sbjct: 123 AALGE 127 >gi|228911766|ref|ZP_04075535.1| transcriptional regulator [Bacillus thuringiensis IBL 200] gi|228847858|gb|EEM92743.1| transcriptional regulator [Bacillus thuringiensis IBL 200] Length = 186 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R MSQEKL E + ++ Q + +E N L +S + + Sbjct: 1 MNIGRQIQYFRKRDNMSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDD 60 Query: 73 FFDVS 77 Sbjct: 61 LVKGD 65 >gi|225571052|ref|ZP_03780069.1| hypothetical protein CLOHYLEM_07151 [Clostridium hylemonae DSM 15053] gi|225160133|gb|EEG72752.1| hypothetical protein CLOHYLEM_07151 [Clostridium hylemonae DSM 15053] Length = 279 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 37/81 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK I + R ++Q+ L + L +T + + K+E+G++ S L +++VL+ S + Sbjct: 10 GKFICVMRKEKNLTQKDLAQKLDVTDKAISKWERGISCPDISLLIPLAKVLDVTTSELLN 69 Query: 76 VSPTVCSDISSEENNVMDFIS 96 E V + + Sbjct: 70 GERASEEQPEHAEAMVEEALH 90 >gi|225019677|ref|ZP_03708869.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum DSM 5476] gi|224947522|gb|EEG28731.1| hypothetical protein CLOSTMETH_03630 [Clostridium methylpentosum DSM 5476] Length = 261 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +++++ R G+SQE+L E LG++ Q V K+E G + L +S++ + Sbjct: 1 MQLNEKLQILRKEAGLSQERLAEKLGVSRQAVSKWESGQSTPDIENLSALSDLFGVTLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + S + Sbjct: 61 LIKKESAPQPAQAVRPAYGGTARSYRFEYE 90 >gi|168210976|ref|ZP_02636601.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|170710994|gb|EDT23176.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] Length = 354 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 5/121 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R ++Q+ L + L ++ + YEKG L +++ + I F Sbjct: 8 NNLKKYRKDNKLTQDDLAKRLNVSRSAISYYEKGTVEPSIFFLINLANEMNCSIDNLFGF 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + V D+ P + + ++IDD K + +L +++ ++ Y + Sbjct: 68 NREVTIDLPQNLTKED---LKPLEKEFKKENLEIDDPKYY--LDKLKKTLTKVQRSYIEL 122 Query: 137 E 137 E Sbjct: 123 E 123 >gi|149916489|ref|ZP_01905006.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] gi|149809591|gb|EDM69447.1| transcriptional regulator, XRE family protein [Roseobacter sp. AzwK-3b] Length = 435 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 7/133 (5%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P +G RIR RR++ G+ Q +L + +GI+ + E R+ L ++EVLE Sbjct: 2 PESSMIGTRIRERRVMNGIRQSELAKMVGISPSYLNLIEHNRRRIAGKTLIKLAEVLEVE 61 Query: 70 ISFFFDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 S + + E + + T + F + + L I Sbjct: 62 PSALSEGAEVTLIAALREAAGSQTGIRVETERVQEFAGRFSGWAN-----LLARLHARIG 116 Query: 128 SSEKKYRTIEEEC 140 E+ T+ + Sbjct: 117 GLERTVETLTDRL 129 >gi|78067809|ref|YP_370578.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968554|gb|ABB09934.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 183 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 46/111 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + V +R+R R G+SQ +L + G+T + E+G L+ + E + + Sbjct: 1 MSTEVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + FF + S + + + + L ++ ++ + ++I + Sbjct: 61 AEFFTFELVESRTVVSRRDEMPNLGNDTLAFHLVGASMKDRNMCILREIYQ 111 >gi|331017574|gb|EGH97630.1| putative phage repressor [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 228 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ IR R G+SQ+ L G Q + YEKG + ++ I++ L Sbjct: 4 LGQHIRKLRKEKGLSQQALAHACGWESQSRIGNYEKGTRQPSLQDIRKIADTLGVSFVDL 63 Query: 74 FDVSPTVCSDI 84 + + Sbjct: 64 VAFTDDNAQPL 74 >gi|325695610|gb|EGD37510.1| transcriptional regulator [Streptococcus sanguinis SK150] Length = 228 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 52/118 (44%), Gaps = 26/118 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+ + + L I++Q +E+GV +++ + ++L P +F + Sbjct: 5 EKLKARRKELKLTQKDIADKLRISYQAYSAWERGVKEPSTEKVRLLEKLLNVPKGYFTE- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 +++ R + + +++++ R +V+ E+ + Sbjct: 64 ------------------------IEIVRLYNTL-SPNGKEQVVSYARDLVTEEQNKK 96 >gi|319787703|ref|YP_004147178.1| XRE family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466215|gb|ADV27947.1| transcriptional regulator, XRE family [Pseudoxanthomonas suwonensis 11-1] Length = 182 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 39/94 (41%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R++ R G+SQ +L +G+T + E+ S L+ + + + ++ Sbjct: 1 MDIGARLQRVRTARGLSQRELARRVGVTNSTISLIEQNKVSPSVSSLKKVLDGIPISLAD 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF D+ P + + D + L Sbjct: 61 FFTQDLDPGQPEQPFYTADELPDVGNNDIHYYLV 94 >gi|317057449|ref|YP_004105916.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449718|gb|ADU23282.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 195 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 34/72 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R+ G++Q++L E + ++ + V K+E G S L ++E+ + ++ Sbjct: 7 GALIRQLRLAAGLTQKQLAEKVNVSDKAVSKWECGNGAPDVSLLTDLAEIFGTDVNTLLS 66 Query: 76 VSPTVCSDISSE 87 S + + Sbjct: 67 GSKDINESEKGD 78 >gi|257439204|ref|ZP_05614959.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198337|gb|EEU96621.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 95 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 35/88 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI R +SQEKL E LG++ + E+G + L I+E + + Sbjct: 7 AIGNRIFTLRTNAKLSQEKLAEKLGVSHHHLGDLERGSSNGSVKILIDIAEYFHVSMDYL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 + +E +D + GL Sbjct: 67 LLGRDPSRNQFQNELQAAIDHLEKIKGL 94 >gi|205374993|ref|ZP_03227784.1| XRE family transcriptional regulator [Bacillus coahuilensis m4-4] Length = 292 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 7/112 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + P +G+ IR R LG+ Q+ L + + T Q+ K E G++ ++ L IS+ L Sbjct: 1 MNQPDFSQIGQVIRELREALGLHQQDLCKGI-CTQSQLSKIENGISLPQSTTLYMISKRL 59 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++ F+ + T D E ++ + + I +V +R+K Sbjct: 60 GIDVNTLFEYTTTSRMDYVLEVEALIRGYVRK------KDYKSIREVVLREK 105 >gi|163841313|ref|YP_001625718.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162954789|gb|ABY24304.1| transcriptional regulator [Renibacterium salmoninarum ATCC 33209] Length = 194 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 38/97 (39%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 ++ +D + +RIR R+ G S + L ++ + + E G R+ +L +++ Sbjct: 4 RMTQDLDAVIRQRIRAARLARGWSLDSLAAKCALSPSTLSRIETGNRRIALDQLVPLAKA 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 L + + + I E + + L+ Sbjct: 64 LGMTLDELVESTDEDSVVIRPEPEHTQGLTTWLLSLE 100 >gi|104782490|ref|YP_608988.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila L48] gi|95111477|emb|CAK16197.1| putative transcriptional regulator, Cro/CI family [Pseudomonas entomophila L48] Length = 129 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 16/116 (13%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R LG++Q G+ G+ KYE G L ++ + Sbjct: 5 GPRLREERERLGLTQRVFGDIGGVEPNAQGKYESGERTPRMDYLAAVAAK-GVDALYVLS 63 Query: 76 V--SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 +P ++++E+ +L F ++ + + L+ + Sbjct: 64 GVCTPAPLDSLTADED------------RLLGAFRRLPSAD-QAAVWHLLNRLAGE 106 >gi|52424167|ref|YP_087304.1| HipB protein [Mannheimia succiniciproducens MBEL55E] gi|52306219|gb|AAU36719.1| HipB protein [Mannheimia succiniciproducens MBEL55E] Length = 159 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 49/117 (41%), Gaps = 4/117 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R LG++Q ++ + G++ + KYE+GV G+ L ++ + + + + Sbjct: 10 RLKNERNRLGLTQAEIAKKCGVSREMWGKYERGVALAGSEVLFSLAA-IGVDMDYILLGT 68 Query: 78 PTVCSDISSEENNVMDFISTPDGLQ--LNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + E + L + F+Q D R I+ + +++ K Sbjct: 69 RKEVFEEITTEALKDMPKADFSDKTGLLVQLFMQC-DDNGRAAILSVAQTMAGMANK 124 >gi|260463544|ref|ZP_05811743.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259030635|gb|EEW31912.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 482 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 43/125 (34%), Gaps = 2/125 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R G++Q + E LGI+ + E+ + + ++ V + Sbjct: 9 GPRIRRIRNAKGLTQTAMAEGLGISPSYLNLIERNQRPLTVQLILKLASVYKVDPHELQG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + + + + P +L + +I+L R+ ++ Sbjct: 69 EARGSVAALKEVFTDPLLVGELPGDQELIELAEAAPNASA--AVIKLFRAYREQAERLSD 126 Query: 136 IEEEC 140 + E Sbjct: 127 LNELL 131 >gi|228962984|ref|ZP_04124195.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228796705|gb|EEM44103.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 136 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 46/128 (35%), Gaps = 5/128 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R + GMS++ L L I + + +E G + +L I+ +S + Sbjct: 5 GQNLKKLRGMRGMSRKDLANELDIPYVTLTTWESGSRIPNSDKLIPIANFFGVSVSDLVE 64 Query: 76 --VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVRSIVSSE 130 + ++ + N + L + + D ++ ++I+ + Sbjct: 65 KTIDNNEILNMYHKSNGDCEDPIKRLTAALYEKYKSVPDQYKAEIEKEILRYADLLKLDI 124 Query: 131 KKYRTIEE 138 + E Sbjct: 125 DQKNKNNE 132 >gi|169350485|ref|ZP_02867423.1| hypothetical protein CLOSPI_01253 [Clostridium spiroforme DSM 1552] gi|169292805|gb|EDS74938.1| hypothetical protein CLOSPI_01253 [Clostridium spiroforme DSM 1552] Length = 117 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I R G+SQE+LG + +T Q + +E +L+ +S+V + + Sbjct: 1 MTLGENILKLRKKQGLSQEQLGYQIDVTRQTISNWESEDTAPNPEQLKRLSKVFDISVDE 60 Query: 73 FFDVS 77 D Sbjct: 61 LLDNE 65 >gi|163813865|ref|ZP_02205259.1| hypothetical protein COPEUT_00018 [Coprococcus eutactus ATCC 27759] gi|158450735|gb|EDP27730.1| hypothetical protein COPEUT_00018 [Coprococcus eutactus ATCC 27759] Length = 351 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 43/97 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G++QE++ LG++ V K+EKG S L ++ +L+ ++ Sbjct: 1 MRIGEQIKNYRKTAGLTQEQVANYLGVSTPAVNKWEKGNTYPDISLLPALARLLKIDMNE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 F + + N + +S + + Sbjct: 61 LFSFHEELTEKEIGQFVNELSEVSLDSFTEAFEMASR 97 >gi|160915810|ref|ZP_02078018.1| hypothetical protein EUBDOL_01825 [Eubacterium dolichum DSM 3991] gi|158432286|gb|EDP10575.1| hypothetical protein EUBDOL_01825 [Eubacterium dolichum DSM 3991] Length = 171 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 43/98 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + IR R G+SQE+L L + Q V K+EK ++ +S L ++E L++ +S Sbjct: 4 ENIRNLRKAKGLSQEELAIKLNVVRQTVSKWEKSLSVPDSSMLVSLAEELDTSVSTLLGE 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + N+ + + R +I ++ Sbjct: 64 TIQEEGLNEKDLKNISKKLEVINLQFAKRNKRKIKTIR 101 >gi|332652945|ref|ZP_08418690.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332518091|gb|EGJ47694.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 169 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + I+ R G+SQ++L L + Q V K+E+G++ + L +SE LE+P+S Sbjct: 1 MLSENIKTIRKSKGLSQQELAVKLNVVRQTVSKWEQGLSVPDSDLLIALSEALETPVSTL 60 Query: 74 FDVSPTVCSDIS 85 + + Sbjct: 61 LGENVAEAEADT 72 >gi|307330591|ref|ZP_07609731.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306883747|gb|EFN14793.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 402 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 5/123 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P D ++G RIR R I S +LG ++ Q+ + E G AS L ++ L Sbjct: 5 MPETSDQHIGARIRELRAIRDFSLAELGRRAHVSTSQLSRVENGEQPASASVLSAVARAL 64 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 IS I + + +D + +P G L + I++DD + I L I Sbjct: 65 AVDISVL-----HGQPYIKILQKDQLDAMVSPIGSALEAWDIELDDEPEPRSIEGLEAEI 119 Query: 127 VSS 129 Sbjct: 120 ARM 122 >gi|326317279|ref|YP_004234951.1| XRE family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374115|gb|ADX46384.1| transcriptional regulator, XRE family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 469 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 10/120 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R G+SQ L + LG++ + + E+ + S L I VL + F + Sbjct: 7 GVKLRKLRAERGLSQIALAQALGLSPSYLNQIEQNQRPLTVSVLLKIHRVLGVDVQEFSE 66 Query: 76 VSPTV-CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL----VRSIVSSE 130 + + + ++ P+ ++ + + ++ L + ++ E Sbjct: 67 DEEARLVAGLRQALAGAAEPVALPELQEVAAQMPALG-----RAVLALHHRHLEAMERLE 121 >gi|255014004|ref|ZP_05286130.1| putative transcriptional regulator [Bacteroides sp. 2_1_7] Length = 130 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 10/129 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R G+ QE L + +G++ + YEK + + L+ I++ L+ PI + Sbjct: 12 GANLKRWREWRGIKQEVLADKIGVSQATLSGYEK-KDELEPEVLEKITKALDIPIEAITE 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 ++ +I S +T G N+ F I KI+EL ++ +E++ Sbjct: 71 LNEGALINIYSGT---WQDNATAAGSIQNQTFNPI------DKIVELYERLLKAEQEKVA 121 Query: 136 IEEECMVEQ 144 + E + ++ Sbjct: 122 MLHEIIKDK 130 >gi|91779152|ref|YP_554360.1| transcriptional regulator [Burkholderia xenovorans LB400] gi|91691812|gb|ABE35010.1| Transcriptional regulator, XRE family with Cupin sensor domain [Burkholderia xenovorans LB400] Length = 189 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 39/104 (37%), Gaps = 4/104 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N + I V R++ R G+SQ +L + G+T + E+ L+ Sbjct: 1 MSENLAM----SIEVATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLK 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + E + ++ FF V + S ++ + + L Sbjct: 57 KLLECIPMSLAEFFTFEVEVERSVVSRRADMPNLGNESIEFYLA 100 >gi|115353089|ref|YP_774928.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|170702522|ref|ZP_02893400.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|172061941|ref|YP_001809593.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115283077|gb|ABI88594.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] gi|170132560|gb|EDT01010.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171994458|gb|ACB65377.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 183 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 37/96 (38%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + V +R+R R G+SQ +L + G+T + E+G L+ + E + + Sbjct: 1 MSTEVAERLRFVRNKHGLSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + FF + S + + + + L Sbjct: 61 AEFFTFELVESRSVVSRRDEMPNLGNDTLAFHLVGA 96 >gi|293376878|ref|ZP_06623096.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292644488|gb|EFF62580.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 330 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 40/94 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I R GMSQE+L LG+T Q + +E+G+ + L ++ + E+ + Sbjct: 5 QLGTQIATLRKRRGMSQEELANQLGVTRQAISNWERGMTQPDLEMLMKLAAIFETDLDGL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + + + + ++ L YF Sbjct: 65 IGIKSDIKEEPVELNLKPLKWMYLTQLFSLIGYF 98 >gi|257866249|ref|ZP_05645902.1| DNA binding protein [Enterococcus casseliflavus EC30] gi|257873237|ref|ZP_05652890.1| DNA binding protein [Enterococcus casseliflavus EC10] gi|257875884|ref|ZP_05655537.1| DNA binding protein [Enterococcus casseliflavus EC20] gi|257800207|gb|EEV29235.1| DNA binding protein [Enterococcus casseliflavus EC30] gi|257807401|gb|EEV36223.1| DNA binding protein [Enterococcus casseliflavus EC10] gi|257810050|gb|EEV38870.1| DNA binding protein [Enterococcus casseliflavus EC20] Length = 172 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++++ R G+SQ + E L I+ Q + K+E G L +S++ + I Sbjct: 1 MALAEQLKSCRESSGLSQTAVAEKLQISRQSISKWENGRGYPDIENLILLSDLYQVSIDE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + I + + D Sbjct: 61 LLRENEALKERIETNNQEIND 81 >gi|225570544|ref|ZP_03779569.1| hypothetical protein CLOHYLEM_06646 [Clostridium hylemonae DSM 15053] gi|225160741|gb|EEG73360.1| hypothetical protein CLOHYLEM_06646 [Clostridium hylemonae DSM 15053] Length = 367 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 11/100 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK I R G++QE+L E +G++ V K+E G L ++ + + Sbjct: 4 VNIGKNIMKYRRETGITQEQLAEHMGVSKSSVSKWETGNAYPDICLLPELATLFNISVDT 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 P + + +L F + Sbjct: 64 LMGYEPQLTKKRIA-----------KLYRELAEAFPSEPE 92 >gi|223985127|ref|ZP_03635223.1| hypothetical protein HOLDEFILI_02529 [Holdemania filiformis DSM 12042] gi|223962949|gb|EEF67365.1| hypothetical protein HOLDEFILI_02529 [Holdemania filiformis DSM 12042] Length = 260 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+++ R G+SQE L + LG T Q V K+E ++ +S++ + Sbjct: 4 GEKLFKLRKEKGLSQEALADQLGTTRQAVSKWENNQGYPETEKILQLSQLFGVSTDYLL 62 >gi|149004413|ref|ZP_01829153.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP14-BS69] gi|147757662|gb|EDK64680.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP14-BS69] Length = 120 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 9/82 (10%), Positives = 35/82 (42%), Gaps = 3/82 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +SQ+++ + + I+ + + ++E G +++ +++ +++ + + Sbjct: 2 NRLKELRQEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKVKQLADYFGVSVGYLLGY 61 Query: 77 SP---TVCSDISSEENNVMDFI 95 + E D + Sbjct: 62 ESNPLERLESLVDELKEHKDLL 83 >gi|153954532|ref|YP_001395297.1| hypothetical protein CKL_1914 [Clostridium kluyveri DSM 555] gi|153954634|ref|YP_001395399.1| hypothetical protein CKL_2016 [Clostridium kluyveri DSM 555] gi|219855106|ref|YP_002472228.1| hypothetical protein CKR_1763 [Clostridium kluyveri NBRC 12016] gi|146347390|gb|EDK33926.1| Hypothetical protein CKL_1914 [Clostridium kluyveri DSM 555] gi|146347492|gb|EDK34028.1| Hypothetical protein CKL_2016 [Clostridium kluyveri DSM 555] gi|219568830|dbj|BAH06814.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 213 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 52/126 (41%), Gaps = 11/126 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +I+ R + +Q+ LG+ L + + KYE G + L +S++ + + Sbjct: 94 GNKIKELREEMNWTQDHLGKLLNVKRAAISKYENGKVPLTDEILIKLSKIFDVSCDYILG 153 Query: 76 VSPTVCSDISSEENNVMDFIS--TPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 VS + + M+ I +P+ + +I++ ++L S+ ++ + Sbjct: 154 VSNKRNDSKVENKKSFMEKIEDLSPESKEELEKYIEL---------LKLKDSLDKNKDEQ 204 Query: 134 RTIEEE 139 ++ Sbjct: 205 SATLDQ 210 >gi|126650379|ref|ZP_01722607.1| hypothetical protein BB14905_18535 [Bacillus sp. B14905] gi|126593029|gb|EAZ87011.1| hypothetical protein BB14905_18535 [Bacillus sp. B14905] Length = 182 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 30/61 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG +I+ R MSQ+ L + +T + K E G L I+E+ + P+++ Sbjct: 4 LEVGVKIKQMRKKNKMSQDDLASQINLTKSHISKIENGKATPSLVTLSKIAEIFDVPMAW 63 Query: 73 F 73 F Sbjct: 64 F 64 >gi|300172874|ref|YP_003772039.1| PbsX transcriptional repressor [Leuconostoc gasicomitatum LMG 18811] gi|299887252|emb|CBL91220.1| transcriptional repressor of pbsx genes,putative [Leuconostoc gasicomitatum LMG 18811] Length = 154 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 3/101 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R I G++Q+ L + + + V + E L I+ + PI + Sbjct: 6 QRIKQLRKIYGLTQKDLADKINSSRTNVARIETDKVHPSYPMLSTIANAFDVPIEYL--- 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 V +DI + NV+ F + L N F ++ ++ + Sbjct: 63 QGIVNADIDNNHENVLYFYDDGEQLDPNMSFYAHNEKELHE 103 >gi|295108966|emb|CBL22919.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 351 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 43/97 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G++QE++ LG++ V K+EKG S L ++ +L+ ++ Sbjct: 1 MRIGEQIKNYRKTAGLTQEQVANYLGVSTPAVNKWEKGNTYPDISLLPALARLLKIDMNE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 F + + N + +S + + Sbjct: 61 LFSFHEELTEKEIGQFVNELSEVSLDSFTEAFEMASR 97 >gi|229551306|ref|ZP_04440031.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258540940|ref|YP_003175439.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|229315265|gb|EEN81238.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257152616|emb|CAR91588.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 189 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 32/72 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R+ ++Q ++ L ++ + V +E G ++ + +++ + + Sbjct: 6 LGNHLKTLRLTRQLTQAQVAHQLFVSRKTVSTWETGRHQPDLQTVCQLADFYQITVDELL 65 Query: 75 DVSPTVCSDISS 86 P+ + +S Sbjct: 66 RPVPSKATKKTS 77 >gi|269127227|ref|YP_003300597.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312185|gb|ACY98559.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 164 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 13/148 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISE 64 +P+ +G R+R R G+S + E ++ V YE+G V +L +++ Sbjct: 1 MPSEYAKALGARLRAIRTQQGLSLHGVEEKSRGRWKAVVVGSYERGDRAVTVQKLAELAD 60 Query: 65 VLESPISFFFDV----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK--VRQK 118 P+S SP + + + + L RY I + K Sbjct: 61 FYGVPVSELLPGGASPSPLGPTPKLVIDLERLQQLPKDKAGPLARYAATIQSQRGDYNGK 120 Query: 119 IIEL----VRSIV-SSEKKYRTIEEECM 141 ++ + +RS+ +K + EE + Sbjct: 121 VLSIRQEDLRSLAVIYDKSPADLTEELI 148 >gi|229815035|ref|ZP_04445372.1| hypothetical protein COLINT_02077 [Collinsella intestinalis DSM 13280] gi|229809265|gb|EEP45030.1| hypothetical protein COLINT_02077 [Collinsella intestinalis DSM 13280] Length = 155 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 35/90 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R+ R G SQE+L + LG++ Q + K+E R + ++++ F Sbjct: 29 QLADRLLDLRRKAGYSQEQLADLLGVSRQAISKWEGAQGRPEVDNVVKLAQIYRVSTDFI 88 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQL 103 S +V S + +S L Sbjct: 89 LTGSASVPSVCETPSAPAPRELSREYRFAL 118 >gi|199598451|ref|ZP_03211869.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|258508930|ref|YP_003171681.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|199590635|gb|EDY98723.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|257148857|emb|CAR87830.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG] gi|259650223|dbj|BAI42385.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 343 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 29/142 (20%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR +R+ G++QE L + +G+T V K+EKG++ + L ++ L + ++ Sbjct: 1 MHLNQIIRNKRLAAGLTQEALAQKVGVTAPAVSKWEKGISYPDITLLPILARNLNTDVNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL--------QLNRYFIQIDD------------ 112 D S + + + DG + R + + Sbjct: 61 LLDFSADLDPAALRRFYTKLTATAQKDGWKAAVALVDEELREYPSVPQLQMMVPAFLQGL 120 Query: 113 ---------VKVRQKIIELVRS 125 VR++II+L ++ Sbjct: 121 KSDIPTNEWPAVRERIIQLYQA 142 >gi|196037154|ref|ZP_03104469.1| transcriptional regulator [Bacillus cereus W] gi|195990258|gb|EDX54311.1| transcriptional regulator [Bacillus cereus W] Length = 116 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 46/109 (42%), Gaps = 6/109 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ R ++QE+LG +G++ + +EKG G L+ I++ + Sbjct: 1 MIGEKIKELRKNNKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFNVTTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 S E + + I T +G + + + + ++ +L Sbjct: 61 LGRSEDP------ELSEEENKIVTEEGKNIMALIESLPEEERKKAWEQL 103 >gi|56964891|ref|YP_176622.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911134|dbj|BAD65661.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 109 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 41/102 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + KR+R R ++Q+ + LGIT YE+G N +L+ ++E+ IS+ Sbjct: 2 VELNKRLRELRKAHQLTQQDVASFLGITESAYGFYEQGRNEPSLRKLKQLAEIYHVSISY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + +D + + F +I + Sbjct: 62 LAGETDRINEQTQRYYFKDLDKEEQEFLEEQLKLFRKIRKNR 103 >gi|303235344|ref|ZP_07321962.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302493658|gb|EFL53446.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 174 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE+L + + Q V K+E+G++ + L +SE+L + +S Sbjct: 4 ENIKSLRKSNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILHTSVSVLLGE 63 Query: 77 SPTVCSDIS 85 + Sbjct: 64 NVEETEQTE 72 >gi|295108159|emb|CBL22112.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 110 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 8/111 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI MSQ +L + GIT + +Y KG + L +I+ L + F Sbjct: 5 LGGRIAELLTQYNMSQRELADKAGITEVSMSRYIKGDRVPKGTTLANIATALHTTTDFLL 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + + D SE + I+ R Q+ + R+ II L+ S Sbjct: 65 NGEGSGTGDFESEYYQIHRLIA--------RNASQMSPKQRRELIIALLES 107 >gi|227513208|ref|ZP_03943257.1| hypothetical protein HMPREF0497_2330 [Lactobacillus buchneri ATCC 11577] gi|227083589|gb|EEI18901.1| hypothetical protein HMPREF0497_2330 [Lactobacillus buchneri ATCC 11577] Length = 104 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 34/94 (36%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R G++ +LG +G + + ++E + L + + L + I FF Sbjct: 7 GKKLKELRKAKGLTASELGSKMGYSQSYISRFETDRATPDINALGDMLKYLGTDIPSFFG 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + +L R F Sbjct: 67 DELEPKKRALLNAISHLSEEQIILLTELLRSFNS 100 >gi|153008774|ref|YP_001369989.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560662|gb|ABS14160.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 182 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 38/84 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + + + Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGM 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF + P + + +++ Sbjct: 61 AEFFALEPDAPHKVFYQAEELVEI 84 >gi|152964475|ref|YP_001360259.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151358992|gb|ABS01995.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 194 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 33/86 (38%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +D + +RIR R+ G S + L ++ + + E G R+ +L ++ L Sbjct: 1 MEQDIDAIIRQRIRGLRLAKGWSLDALAARCFMSPSTLSRIETGHRRIALDQLVPLARAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVM 92 ++ + D I + Sbjct: 61 DTTLDDLVDSGAEDDVVIRPLAEHRP 86 >gi|149278961|ref|ZP_01885095.1| hypothetical protein PBAL39_03749 [Pedobacter sp. BAL39] gi|149230240|gb|EDM35625.1| hypothetical protein PBAL39_03749 [Pedobacter sp. BAL39] Length = 232 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 33/90 (36%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K +P I +G R++ R++ ++ + + E G +G + Sbjct: 1 MINKMKTSHPQQIMIGPRLKEARLLRDLTLAEFYTPITRHIGNCSSIENGKRIIGKRLTR 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN 90 I+E + F + + + + + Sbjct: 61 DIAEYHHINLKFLTTGTGEIFTKPIDDRQH 90 >gi|229100213|ref|ZP_04231113.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-29] gi|228683255|gb|EEL37233.1| Prophage LambdaBa04, DNA-binding protein [Bacillus cereus Rock3-29] Length = 114 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 8/107 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G+ ++ R ++Q +L E L ++ Q++ +E G + L I+ + Sbjct: 5 GQTLKQLRKSRDLTQSELAEILNLSQSQIKNWETGRFQPDIQTLASIASFFNVSLDVLVG 64 Query: 74 ----FDVSPTV--CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 F+ P S+ S + D Q+ + I D + Sbjct: 65 FSNNFEDEPIQQVISEARSTYGALDDSQKERFCNQVLLFIRMIKDNQ 111 >gi|255282960|ref|ZP_05347515.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255266499|gb|EET59704.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 228 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 34/77 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ MSQE+L E + +T Q + +E G N L +S + + Sbjct: 34 MEIGTQIKKYRLASEMSQEELAEKIYVTRQTISNWENGRNYPDVKSLLLLSSLFNISLDI 93 Query: 73 FFDVSPTVCSDISSEEN 89 + +EE+ Sbjct: 94 LVKGDIEEMKEKINEED 110 >gi|210621225|ref|ZP_03292531.1| hypothetical protein CLOHIR_00474 [Clostridium hiranonis DSM 13275] gi|210154836|gb|EEA85842.1| hypothetical protein CLOHIR_00474 [Clostridium hiranonis DSM 13275] Length = 118 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 5/96 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--- 73 +++ R G+SQE+LG LG++ Q + K+E G + +L +S+ + Sbjct: 5 EKLIELRKAKGLSQEELGNELGVSRQTISKWELGQSYPDFQKLVLLSDFFNISLDKLIKD 64 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 D DF + L F Sbjct: 65 IDLDDVRENNQSDEKVSKMYEDFQTAKTALNYLLNF 100 >gi|118477277|ref|YP_894428.1| hypothetical protein BALH_1588 [Bacillus thuringiensis str. Al Hakam] gi|196045052|ref|ZP_03112285.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228933140|ref|ZP_04095997.1| hypothetical protein bthur0009_16070 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229184045|ref|ZP_04311258.1| hypothetical protein bcere0004_16130 [Bacillus cereus BGSC 6E1] gi|118416502|gb|ABK84921.1| conserved hypothetical protein [Bacillus thuringiensis str. Al Hakam] gi|196024054|gb|EDX62728.1| DNA-binding protein [Bacillus cereus 03BB108] gi|228599428|gb|EEK57035.1| hypothetical protein bcere0004_16130 [Bacillus cereus BGSC 6E1] gi|228826497|gb|EEM72273.1| hypothetical protein bthur0009_16070 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 149 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSCPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENN 90 + + I E + Sbjct: 61 LIKGNQNIKEKIHINEED 78 >gi|49081740|gb|AAT50270.1| PA5301 [synthetic construct] Length = 183 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R+R R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGARLRTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLVE 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF D+ + + + + ++D S ++L Sbjct: 61 FFSLDLEQDSHTQVVYKADELIDISSGAVSMRLV 94 >gi|313890139|ref|ZP_07823774.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121500|gb|EFR44604.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 168 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 32/95 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ + G++Q +L + + Q KYE G + + +S+ ++ + Sbjct: 3 NRLKELQKEKGLTQAELAQVINTNQSQYGKYENGKTNLSLENAKILSDYFGVSPAYLLGL 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 S E + L+ I+ Sbjct: 63 ETEFEPVESRETQFQILVKDRKLSLREISEDTGIN 97 >gi|306827184|ref|ZP_07460474.1| XRE family transcriptional regulator [Streptococcus pyogenes ATCC 10782] gi|304430640|gb|EFM33659.1| XRE family transcriptional regulator [Streptococcus pyogenes ATCC 10782] Length = 245 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 52/125 (41%), Gaps = 11/125 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R M+Q++L + G + +E G ++ ++ ++ L+ F Sbjct: 4 LGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGNRQLDEVDIRKYAKALKIEPQQLF 63 Query: 75 DVSPTVCSDISSEENNVMDFI-STPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D S + + + + I ST L+ +R I +++ +++ +K+ Sbjct: 64 DYSSSPTNPQVELIPSTLQKINSTSSQLEHSRQII----------VLDTAETLLEQQKEI 113 Query: 134 RTIEE 138 + E+ Sbjct: 114 KNNED 118 >gi|304409163|ref|ZP_07390784.1| putative phage repressor [Shewanella baltica OS183] gi|307303166|ref|ZP_07582921.1| putative phage repressor [Shewanella baltica BA175] gi|304352984|gb|EFM17381.1| putative phage repressor [Shewanella baltica OS183] gi|306913526|gb|EFN43948.1| putative phage repressor [Shewanella baltica BA175] Length = 233 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 7/101 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R + RR + ++Q +L + +G++ + ++E G L +++ L+ + Sbjct: 4 LGERSKERRKTINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDWLM 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 S F L + D +V Sbjct: 64 FGDSKNTKKPESNAEWAGGF-------DLWDNDSPLGDDEV 97 >gi|257877769|ref|ZP_05657422.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811935|gb|EEV40755.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 74 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R ++Q ++ L I+ +YE G + L ++ + I + ++ Sbjct: 3 QRIRDLREDNDLTQHQIATLLNISQSTYSRYENGELEIPIQTLIKLANYYNTSIDYLVNM 62 Query: 77 SPTVCSDISSEE 88 + S ++E Sbjct: 63 TDVRTSYKANEH 74 >gi|150388718|ref|YP_001318767.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948580|gb|ABR47108.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 101 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 34/92 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R SQ +L + IT Q + YE GV + L+++++ I + + + Sbjct: 3 RIKELRQEKDFSQIQLAKQFDITQQTISNYESGVREPSITTLKNLADFFNVSIDYLLERT 62 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + + + F + Sbjct: 63 NIPEPVGVLGRKDDYEEGLPEEARRQIESFKE 94 >gi|332291655|ref|YP_004430264.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169741|gb|AEE18996.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 274 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K P +G++I R G++QE+L I+ + +Q+ E G ++ Sbjct: 1 MM---KQP-----ELGQKILELRQQKGLTQEELVAQCNISVRTIQRIEAGETMPRVYTIK 52 Query: 61 HISEVLESPISFFFDV 76 I L+ + + Sbjct: 53 TILFALDRDLDDLQED 68 >gi|324020380|gb|EGB89599.1| helix-turn-helix protein [Escherichia coli MS 117-3] Length = 153 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 1/121 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ GMSQE + G + + E+G + ++ ++E L Sbjct: 1 MKKSLRILFGQRVKELRIATGMSQEAFADLCGFARSYLSRIERGGSNASLDAIEVLAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI-QIDDVKVRQKIIELVRS 125 + +D D GL R + D +++ + Sbjct: 61 SVEPWQLLTFDSSEDNDPELLVPYAADGSCFHPGLASTRDGSFGVGDKAAQKRFDSFSEA 120 Query: 126 I 126 + Sbjct: 121 L 121 >gi|296134047|ref|YP_003641294.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296032625|gb|ADG83393.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 255 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 2/90 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R G+S G G++F + + E+G L+ I+ L P+S F Sbjct: 72 IGDRIRALREEKGLSLVDFGNLTGLSFTYLSELERGTTVPAVGTLKKIAACLGVPVSLFI 131 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + I +E+ + +L Sbjct: 132 E--NERKNSIIAEKLQYARKMKGLTQKELA 159 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 48/115 (41%), Gaps = 1/115 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + ++++ R + G++Q++L GI+ V + E G ++ IS+VL + Sbjct: 137 NSIIAEKLQYARKMKGLTQKELAVRAGISPGLVGQIEMGKVNASLKTIEKISQVLGVSVC 196 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + V + I + + + L ++++ K+ + ++ + Sbjct: 197 YLILDREEVEAMIGGLSPELRNLLMDKKVQLLLGSICRMEEDKL-KLVLNFADML 250 >gi|290968677|ref|ZP_06560215.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L] gi|290781330|gb|EFD93920.1| DNA-binding protein [Megasphaera genomosp. type_1 str. 28L] Length = 226 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPI 70 + VGKRI+ +R M+ + + LG+T VQ+YE G V LQ I ++L Sbjct: 7 NKMVGKRIKKQRKQNNMTLKDIAVKLGVTESTVQRYETGNISNVSIEMLQKIGKILLVSP 66 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST 97 +F E + ++ Sbjct: 67 AFLLGWDSAEKVVSDLEAHKHKFLDAS 93 >gi|289579258|ref|YP_003477885.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289528971|gb|ADD03323.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 117 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V +G++++ R G +Q ++ + GI + + YE G + + L+ ++ Sbjct: 2 SVYKAIGEKLKEVREKNGYTQAEVEKATGIKREMLSYYENGRREIDIATLEKLASFYGYS 61 Query: 70 ISFFFDVSPTVC 81 I +F + Sbjct: 62 IEYFIKNTEEPE 73 >gi|242372616|ref|ZP_04818190.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242349671|gb|EES41272.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 189 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 25/70 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +I+ R G SQE L E + ++ Q + +E + L + + + Sbjct: 1 MDISNQIKKFRQRDGYSQEFLAEKMFVSRQTISNWENNKSYPDIHNLLMMCNLFNVSLDD 60 Query: 73 FFDVSPTVCS 82 Sbjct: 61 LVKGDVEKLE 70 >gi|228939078|ref|ZP_04101675.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971956|ref|ZP_04132576.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978567|ref|ZP_04138942.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228781166|gb|EEM29369.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228787773|gb|EEM35732.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820606|gb|EEM66634.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939578|gb|AEA15474.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 112 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 47/107 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +++ R G + +++ + +G YE + A L +++V ++ F Sbjct: 1 MNIGTQLKFLRNRRGWTMQEVADRIGKNDSTYSGYETNKRKPNAEVLVQLADVFDTTADF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + S + ++ + DG+++ +I ++ +RQ + Sbjct: 61 ILGRTDNPNSLNFNVKDFLDQGRLHSDGVEITDEQAEIANILLRQLL 107 >gi|170754897|ref|YP_001780428.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169120109|gb|ACA43945.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 201 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ K+I+ R+ +SQE L E + +T Q + +E G N + L +S + + Sbjct: 1 MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI 60 Query: 73 FFDVSPTVCSDISSEEN 89 + E+ Sbjct: 61 LVKGDLEEMKEEIKTED 77 >gi|95928831|ref|ZP_01311577.1| transcriptional regulator of molybdate metabolism, XRE family [Desulfuromonas acetoxidans DSM 684] gi|95135176|gb|EAT16829.1| transcriptional regulator of molybdate metabolism, XRE family [Desulfuromonas acetoxidans DSM 684] Length = 372 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 1/87 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G SQ++L E +GI Q + E G ++ + + F V Sbjct: 12 VRDYRQKQGWSQKELAERIGIKRQAIYDIETGRYLPNTGISLRLARLFGCRVEDLF-VDD 70 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNR 105 T + N ST L R Sbjct: 71 TPEQQQGVDLVNGTCLPSTRLALSRVR 97 >gi|91782830|ref|YP_558036.1| transcriptional regulator [Burkholderia xenovorans LB400] gi|91686784|gb|ABE29984.1| Transcriptional Regulator, XRE(MerR) family with Cupin sensor domain [Burkholderia xenovorans LB400] Length = 191 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 2/94 (2%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K V + +G +IR R L + +++ + GI+ + + E+G + L I+ Sbjct: 6 NNKA--HVAVAIGSKIRALRQRLKRTLDEVAKTAGISKPFLSQVERGHATPSITSLVGIA 63 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 L + +F D S + + F + Sbjct: 64 RALGVTVQYFVDTPTEDKSVLRGSDLKYFGFDGS 97 >gi|148262729|ref|YP_001229435.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146396229|gb|ABQ24862.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 187 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 28/69 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D N+G +I+ R+ ++ + + + G + + + E + L I++ + + Sbjct: 3 DYNIGAKIKKLRLAKKLTLQAVAKETGFSPALISQIENNNVSPPIATLSRIAKFFDVKVG 62 Query: 72 FFFDVSPTV 80 FF Sbjct: 63 MFFTEDEEE 71 >gi|329770320|ref|ZP_08261704.1| hypothetical protein HMPREF0433_01468 [Gemella sanguinis M325] gi|328836744|gb|EGF86398.1| hypothetical protein HMPREF0433_01468 [Gemella sanguinis M325] Length = 181 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 50/110 (45%), Gaps = 1/110 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R+ ++QE+LGE ++ + + E+ + +I +VL FF Sbjct: 4 IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPKDFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 D + + + + T DG +L + ++ ++ I++L + Sbjct: 64 D-KESSSQKVYYSLEDQTSYEETDDGYELTWLVPESNEKEMESLILKLEK 112 >gi|325567650|ref|ZP_08144317.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325159083|gb|EGC71229.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 172 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 35/81 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++++ R G+SQ + E L I+ Q + K+E G L +S++ + I Sbjct: 1 MALAEQLKSCRESSGLSQTAVAEKLQISRQSISKWENGRGYPDIENLILLSDLYQVSIDE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + I + + D Sbjct: 61 LLRENEALKERIETNNQEIND 81 >gi|304404381|ref|ZP_07386042.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304346188|gb|EFM12021.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 109 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 11/115 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R+ +SQE++ + +GIT YE + L +S E + + Sbjct: 6 GDRLRELRLRKNLSQEEVAKQIGITRSAYSHYEINNRQPVYDTLIKLSSYFEVSLDYIIG 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + +P+ +++ R +D K +Q I +++ I S+ Sbjct: 66 GEFSKSEAGL-----------SPETVEIFRLLNTMDQDKRKQSITKMMDVIRQSD 109 >gi|300785112|ref|YP_003765403.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299794626|gb|ADJ45001.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 192 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 6/111 (5%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V VG R+R R GM+ + G++ + + E G R G L ++ + P Sbjct: 7 DVLHAVGPRLRALRRHRGMTLADVAAATGVSESTLSRLESGQRRAGLELLLPLARAYDVP 66 Query: 70 ISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + P + +S G + + I R Sbjct: 67 LDDLVGAPRTGDPRIHLTPIHRHGMTFVPLSRRPGGM--QAYKMIIPSADR 115 >gi|239832573|ref|ZP_04680902.1| XRE family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239824840|gb|EEQ96408.1| XRE family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 182 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 38/84 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + + + Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGM 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF + P + + +++ Sbjct: 61 AEFFALEPDAPHKVFYQAEELVEI 84 >gi|229187999|ref|ZP_04315094.1| Transcriptional regulator, Cro/CI [Bacillus cereus BGSC 6E1] gi|228595479|gb|EEK53204.1| Transcriptional regulator, Cro/CI [Bacillus cereus BGSC 6E1] Length = 116 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 46/109 (42%), Gaps = 6/109 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ R ++QE+LG +G++ + +EKG G L+ I++ + Sbjct: 1 MIGEKIKELRKNSKITQEQLGNAIGVSKMAISYFEKGKKSPGRESLEKIADYFGVTTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 S E N + + + +G + + + + ++ +L Sbjct: 61 LGRSEDP------ELNEEENKVVSEEGKNIMSLIESLSEDERKKAWEQL 103 >gi|167754509|ref|ZP_02426636.1| hypothetical protein CLORAM_00010 [Clostridium ramosum DSM 1402] gi|237733852|ref|ZP_04564333.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167705341|gb|EDS19920.1| hypothetical protein CLORAM_00010 [Clostridium ramosum DSM 1402] gi|229383190|gb|EEO33281.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 242 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + R G+SQE+L LG++ Q V K+E G + R+ I+++ + Sbjct: 6 NLNKYRKQKGLSQEELAFRLGVSRQSVSKWESGQSTPELERIIEIADLFGISLDELIGHE 65 Query: 78 PTVCSDISSEE 88 + EE Sbjct: 66 SNDYVTVDREE 76 >gi|302391440|ref|YP_003827260.1| XRE family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302203517|gb|ADL12195.1| transcriptional regulator, XRE family [Acetohalobium arabaticum DSM 5501] Length = 131 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 7/108 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G++ EKL + + YE + ++E I + Sbjct: 5 QRLKQLRKEKGLTLEKLADEFDRSKTTFSNYENNHRKPDIDLTIELAEYFNVSIDYLLGN 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + +E + +L + + I D K Q +++ V+ Sbjct: 65 TEEKRTADEIKEVISEN-------QELFKLWEIISDRKDLQLLLQQVK 105 >gi|302547803|ref|ZP_07300145.1| putative Helix-turn-helix domain protein [Streptomyces hygroscopicus ATCC 53653] gi|302465421|gb|EFL28514.1| putative Helix-turn-helix domain protein [Streptomyces himastatinicus ATCC 53653] Length = 197 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 38/111 (34%), Gaps = 3/111 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++ IP V VG R+R R G + +L E GI+ + + E G + L Sbjct: 1 MADEDIP-EVLNAVGPRLRALRRERGATLAQLSETTGISLSTLSRLESGQRKPTLELLLP 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQI 110 +++ + PT I P L + QI Sbjct: 60 LAKTYGVQLDELVGAPPTGDPRIHPRPFTRHGQTFVPLTRYLGGLHAYKQI 110 >gi|297588232|ref|ZP_06946875.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC 53516] gi|297573605|gb|EFH92326.1| cro/CI family transcriptional regulator [Finegoldia magna ATCC 53516] Length = 179 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 43/89 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ LG++QE+L E +T + + E+ + L + L + ++ Sbjct: 1 MEIGEKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNDLLNALGTDMAT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 FF P+V + ++ + +S + Sbjct: 61 FFMDKPSVKEIFTKDDYQSSEDLSMNSTI 89 >gi|239625412|ref|ZP_04668443.1| dna-binding protein [Clostridiales bacterium 1_7_47_FAA] gi|239519642|gb|EEQ59508.1| dna-binding protein [Clostridiales bacterium 1_7_47FAA] Length = 67 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR RR G+SQE+L G++ Q V E + H+++ L + + F Sbjct: 5 IRERRKERGISQEELAGKCGVSRQTVNAIENNKYDPTLALAFHLAQELGTTVDGLF 60 >gi|169335255|ref|ZP_02862448.1| hypothetical protein ANASTE_01663 [Anaerofustis stercorihominis DSM 17244] gi|169257993|gb|EDS71959.1| hypothetical protein ANASTE_01663 [Anaerofustis stercorihominis DSM 17244] Length = 143 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R ++Q++LGE LG+ + YEKG +V A +SE+ + + Sbjct: 20 IGDRIKELRKENKLTQQELGEKLGVHSNTISMYEKGNRKVSAEMANKLSEIFNVSVGYIT 79 Query: 75 DVSPTVC 81 Sbjct: 80 KGEDNKK 86 >gi|167749275|ref|ZP_02421402.1| hypothetical protein EUBSIR_00226 [Eubacterium siraeum DSM 15702] gi|167657768|gb|EDS01898.1| hypothetical protein EUBSIR_00226 [Eubacterium siraeum DSM 15702] gi|291556859|emb|CBL33976.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 122 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 1/103 (0%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FFD 75 +RI+ R G SQ ++ E LG+T Q YE G + L I+E + Sbjct: 14 ERIKQLRKAKGASQAQVAEYLGVTKQAYSLYETGKREPPFATLLKIAEYFGTDTDTLLMS 73 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 SD + + D L + + R K Sbjct: 74 GDTARVSDPRLKFALFGETEIDDDVLDDVKRLAMLQLELRRSK 116 >gi|148557685|ref|YP_001265267.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148502875|gb|ABQ71129.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1] Length = 490 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 45/128 (35%), Gaps = 6/128 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R + Q +L LGI+ + + E+ + L I+ + F Sbjct: 29 YMGVRLKRLREERNLKQVELANALGISSSYLNQLEQNQRPLTVPVLLKINAAFGIDVQLF 88 Query: 74 FDVSPTV-CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + +++ + +S + +L V + ++ L R S ++ Sbjct: 89 SEDEEARLITELRDALAEGSESVSIAEIRELAMNM-----PAVGRTLVSLHRRYRESVER 143 Query: 133 YRTIEEEC 140 + + Sbjct: 144 GEAMAAQL 151 >gi|83590463|ref|YP_430472.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573377|gb|ABC19929.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 300 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 55/126 (43%), Gaps = 2/126 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 +G +++ R +G++Q++L + +GI+ + + E + S L ++E L +F Sbjct: 140 LGAKLKRLREKIGLTQKELAQQVGISHSLIGQIETDRIQPSLSTLSSLAEALGVSTCYFL 199 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + E ++ + + P Q+ R D ++ + +++ V + + + Sbjct: 200 MEDDEEDLYLDYRLEADIREALRRPLLQQVVRDLAGWSDREI-KGLLDFVSIMNEARRPL 258 Query: 134 RTIEEE 139 +EE Sbjct: 259 NDDDEE 264 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 37/72 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R G+ E+L + L I + + E+G R+ + L+ ++ +L +S+ Sbjct: 1 MTIGEKLKKLREDRGIPLEELADRLDIAPACMVEVEQGTRRLSLATLKEVAAILGVDVSY 60 Query: 73 FFDVSPTVCSDI 84 F + + + Sbjct: 61 FQEENDNKNDNS 72 Score = 37.5 bits (85), Expect = 0.57, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N D +VG R+R R G++ +L G++ + + E+ + L+ ++ VLE Sbjct: 67 NKNDNSVGARLRRLREQKGITLSELSRRSGVSLAHISEIERSRSTASLKTLEKLAAVLEV 126 Query: 69 PISFFF 74 S Sbjct: 127 STSSLL 132 >gi|119387639|ref|YP_918673.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119378214|gb|ABL72977.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 184 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 32/70 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG+ IR R GM+ +L +G + + + E+G L IS+ L ISFF Sbjct: 4 HVGEDIRSLRKSRGMTLLELAGDVGRSVGWLSQVERGQTTPSVHDLGQISDRLGVNISFF 63 Query: 74 FDVSPTVCSD 83 F S + Sbjct: 64 FRSSSRAPEE 73 >gi|294101955|ref|YP_003553813.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293616935|gb|ADE57089.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 235 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 40/83 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R+ G++Q +L E LG++F + ++EK L +++VLE+ +++ Sbjct: 4 GKRLSELRVKRGLTQLELAEKLGVSFHTILRWEKERRFPDVFHLSILADVLETSVAYLMG 63 Query: 76 VSPTVCSDISSEENNVMDFISTP 98 + + + I+ P Sbjct: 64 EKKNGSGKYYARDIDKEAVIAVP 86 >gi|260868456|ref|YP_003234858.1| putative phage repressor protein CI [Escherichia coli O111:H- str. 11128] gi|257764812|dbj|BAI36307.1| putative phage repressor protein CI [Escherichia coli O111:H- str. 11128] Length = 229 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 3/110 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + G SQ +L LG++ Q VQ + G + +L +S + P S+F Sbjct: 9 NRIAMMLKTKGWSQAELARKLGVSAQSVQYWTTGKTFPRSDKLAQLSVISGYPQSWFL-- 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 S S + L+ F D VR +I++VRSI Sbjct: 67 -GEDASSTFSSAEKHHTREDSVVFNVLDVEFSCGDGTHVRGDLIDVVRSI 115 >gi|255534401|ref|YP_003094772.1| hypothetical protein FIC_00236 [Flavobacteriaceae bacterium 3519-10] gi|255340597|gb|ACU06710.1| hypothetical protein FIC_00236 [Flavobacteriaceae bacterium 3519-10] Length = 133 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 50/130 (38%), Gaps = 5/130 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I+ G+ ++ R +LG+ QE L + Q+ + + + L+ ISEVL+ P+ Sbjct: 5 IHQGRNVKRFREMLGIKQEALAFDLGDEWNQKKISLLEQKDVIEDPLLKKISEVLKIPVE 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 F + ++ + N D Q K++EL ++ +K Sbjct: 65 AFQNFDEEAAINVIANTFNNHD----HSNPQFASVINNSPTFNPIDKMVELYERMLEQQK 120 Query: 132 KYRTIEEECM 141 E+ + Sbjct: 121 DMIEKLEKLI 130 >gi|170288077|ref|YP_001738315.1| XRE family transcriptional regulator [Thermotoga sp. RQ2] gi|281411883|ref|YP_003345962.1| XRE family transcriptional regulator [Thermotoga naphthophila RKU-10] gi|170175580|gb|ACB08632.1| transcriptional regulator, XRE family [Thermotoga sp. RQ2] gi|281372986|gb|ADA66548.1| transcriptional regulator, XRE family [Thermotoga naphthophila RKU-10] Length = 176 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ G++QE+L E ++ + + E L+ I E L + + Sbjct: 1 MRIGEKLRKLRLSKGLTQEELAERTDLSRSFISQLESDKTSPSIDTLERILEALGTDLKH 60 Query: 73 FFDVSPTVCSDISSEEN 89 FF EE Sbjct: 61 FFSDVEEERVVFKKEER 77 >gi|160875134|ref|YP_001554450.1| putative phage repressor [Shewanella baltica OS195] gi|160860656|gb|ABX49190.1| putative phage repressor [Shewanella baltica OS195] gi|315267325|gb|ADT94178.1| putative phage repressor [Shewanella baltica OS678] Length = 233 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 37/97 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R + RR + ++Q +L + +G++ + ++E G L +++ L+ + Sbjct: 4 LGERSKERRKTINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDWLM 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 S F + L ++I Sbjct: 64 FGDSKNTKKPESNAEWAGGFDLWDNDSPLGEDEVEIP 100 >gi|57865959|ref|YP_187612.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|293367592|ref|ZP_06614245.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|57636617|gb|AAW53405.1| transcriptional regulator, Cro/CI family [Staphylococcus epidermidis RP62A] gi|291318305|gb|EFE58698.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329736040|gb|EGG72313.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU045] Length = 189 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NV +I+ R G SQE L E + ++ Q + +E + L + ++ + + Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDE 60 Query: 73 FFDVS 77 + Sbjct: 61 LVEDD 65 >gi|114049187|ref|YP_739737.1| XRE family transcriptional regulator [Shewanella sp. MR-7] gi|113890629|gb|ABI44680.1| transcriptional regulator, XRE family [Shewanella sp. MR-7] Length = 191 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 46/134 (34%), Gaps = 5/134 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K G++ + + E+G + + L I+ + Sbjct: 4 INSYLAATLKQLRSQKGWSLDKAALETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S F + +P + + + +T L + + R +++ Sbjct: 64 STFLEPTPESQGAVFRNADALRQKPATDGML-----VASLFPFEPRFGFEMFELTLLPHY 118 Query: 131 KKYRTIEEECMVEQ 144 ++ E + E Sbjct: 119 ERLSEPHEVGVTEH 132 >gi|329927927|ref|ZP_08281955.1| cupin domain protein [Paenibacillus sp. HGF5] gi|328938146|gb|EGG34542.1| cupin domain protein [Paenibacillus sp. HGF5] Length = 189 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 36/84 (42%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ VG+ ++ R G+S + + E G++ + + E+G + S L I L Sbjct: 3 PIHKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLGIS 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMD 93 + + + T + ++ ++ Sbjct: 63 FTTLIEEAETEVTVVAPDDVEPFH 86 >gi|330814715|ref|YP_004362890.1| hypothetical protein bgla_4p3070 [Burkholderia gladioli BSR3] gi|327374707|gb|AEA66058.1| hypothetical protein bgla_4p3070 [Burkholderia gladioli BSR3] Length = 111 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 4/78 (5%) Query: 1 MVGNKKIP----NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 M + K P NP+ VG+R++ R+ G SQE L ++ + E G Sbjct: 5 MNASAKTPTFERNPITQAVGRRLKEVRLQAGKSQEDLAHEAAVSRVAISAVESGAANTTV 64 Query: 57 SRLQHISEVLESPISFFF 74 L + L +S F Sbjct: 65 LTLAALCRPLGISLSELF 82 >gi|323693566|ref|ZP_08107769.1| DNA-binding protein [Clostridium symbiosum WAL-14673] gi|323502374|gb|EGB18233.1| DNA-binding protein [Clostridium symbiosum WAL-14673] Length = 250 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R G SQE+LG +G+T Q V K+E G ++L +S + E + + Sbjct: 5 EQLMELRKQRGWSQEQLGAKIGVTRQTVSKWETGDTTPELAKLIELSSLFEISVDRLIGI 64 Query: 77 SPTVCSDISSEENNVMDF 94 + ++ Sbjct: 65 EERKDTAPVYIHETGWNY 82 >gi|323485059|ref|ZP_08090412.1| DNA-binding protein [Clostridium symbiosum WAL-14163] gi|323401615|gb|EGA93960.1| DNA-binding protein [Clostridium symbiosum WAL-14163] Length = 250 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 33/78 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R G SQE+LG +G+T Q V K+E G ++L +S + E + + Sbjct: 5 EQLMELRKQRGWSQEQLGAKIGVTRQTVSKWETGDTTPELAKLIELSSLFEISVDRLIGI 64 Query: 77 SPTVCSDISSEENNVMDF 94 + ++ Sbjct: 65 EERKDTAPVYIHETGWNY 82 >gi|319786464|ref|YP_004145939.1| hypothetical protein Psesu_0856 [Pseudoxanthomonas suwonensis 11-1] gi|317464976|gb|ADV26708.1| helix-turn-helix domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 118 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 3/113 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFFDV 76 RIR R+ +SQ +L +G+ V ++E L I+ + Sbjct: 7 RIRKARLSARLSQAELARRVGVKRSAVTQWEHPFGTTPNMHHLLQIAVEAGVSAEWLATA 66 Query: 77 SPTVCSDISSEE-NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + D + L F ++ + R+ + ++ ++ Sbjct: 67 RGAMRPDAGDATGAERGEHAHDEAESDLLMRFRRLP-AQKRRIALRILDALAG 118 >gi|301066917|ref|YP_003788940.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|300439324|gb|ADK19090.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 344 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 47/92 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR RR+ LG++QE+L +G++ V K+EKGV+ + L ++ +L + ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVSYPDITLLPALARILGTDVNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S T+ + S + + G Q Sbjct: 61 LLTFSVTMDPEESRHLYEKLMTTAKDAGWQAA 92 >gi|293364818|ref|ZP_06611535.1| XRE family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|291316268|gb|EFE56704.1| XRE family transcriptional regulator [Streptococcus oralis ATCC 35037] Length = 115 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 36/98 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR+ R +SQ+ L E G+ + E + + L+ I L S Sbjct: 8 KYIGQRIRIIRKEKNLSQQNLSEKAGVGIDYISNLETKGSNIKIDTLEKIITALNITPSE 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 F+ T + + + + QL F + Sbjct: 68 LFESRITPKNPHLELLADQLTQLPQTSQEQLLEAFQLL 105 >gi|257867362|ref|ZP_05647015.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC30] gi|257873693|ref|ZP_05653346.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC10] gi|257801418|gb|EEV30348.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC30] gi|257807857|gb|EEV36679.1| cupin/helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC10] Length = 180 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE +T + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRVQKNLTQEELGERTDLTKGYISQLERDLSSPSMETFFTILEVLGVTPEE 60 Query: 73 FFDVSPTVCSDISSEEN 89 FF + EE+ Sbjct: 61 FFREENAQHQVVYREED 77 >gi|251788780|ref|YP_003003501.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537401|gb|ACT06022.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 72 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N K + G+R++ R+ G+SQE + G+ + E+GV + Sbjct: 1 MKNTK---DITARFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIGV 57 Query: 62 ISEVLESPISFFFD 75 I++ LE + FD Sbjct: 58 IADGLEIQLQSLFD 71 >gi|166153466|ref|YP_001653980.1| transcriptional regulator [Bacillus thuringiensis] gi|165875305|gb|ABY68462.1| putative transcriptional regulator [Bacillus thuringiensis] Length = 186 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R MSQEKL E + ++ Q + +E N L +S + + Sbjct: 1 MNIGRQIQYFRKRDNMSQEKLAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDD 60 Query: 73 FFDVS 77 Sbjct: 61 LVKGD 65 >gi|83593651|ref|YP_427403.1| XRE family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576565|gb|ABC23116.1| transcriptional regulator, XRE family [Rhodospirillum rubrum ATCC 11170] Length = 474 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 8/123 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R G++Q L L I+ + + E+ + L I+ + F + Sbjct: 7 GMRLQRLREERGLTQAALARTLEISPSYLNQMERNQRPLTVPVLLRINAAFGVDVQLFSE 66 Query: 76 VSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 E E+ D I+ + L I +I L R + ++ Sbjct: 67 DEEARLIADLRETLSESGTGDTITLSEIKGLAADMPMIGH-----ALITLHRRARGATER 121 Query: 133 YRT 135 Sbjct: 122 LEA 124 >gi|315649281|ref|ZP_07902370.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315275269|gb|EFU38638.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 122 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 9/119 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R G +QE+L +GIT + YEK + L ++++ + I + Sbjct: 4 GVRISELREQRGWTQEELATSVGITRAALSHYEKNRRKPDFETLTRLADLFDVSIDYLIG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF------IQIDDVKVRQ--KIIELVRSI 126 + + + E + +D + D L F ++ + + R+ + + RS+ Sbjct: 64 RTAQEKAVLDPEVRSFVDGLELSDQ-DLLERFNLTVDGRKLTEEEARRFIAFVRMERSM 121 >gi|295133170|ref|YP_003583846.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294981185|gb|ADF51650.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 136 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 56/134 (41%), Gaps = 15/134 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP---I 70 ++G++I R + GM QE L LGI+ Q V E+ + + +L+ +++VL I Sbjct: 15 HIGRKISRIRELRGMKQETLAAELGISQQSVSSLEQSEH-IEDEKLERVAKVLGVSKEAI 73 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F + S + ++ + ++ K++EL +V +E Sbjct: 74 ENFSEESIFHNINNFNDNSVNNGPLNNFHCTF-----------NPLDKVVELYERLVQAE 122 Query: 131 KKYRTIEEECMVEQ 144 K E+ + ++ Sbjct: 123 KDKVAYLEKLLEKK 136 >gi|229145225|ref|ZP_04273615.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228638236|gb|EEK94676.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] Length = 113 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 31/76 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ IR R G++QE+L E + + + E+G + LQ I+ LE Sbjct: 1 MVGENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGERNISMLTLQKIAVGLEVSPDEV 60 Query: 74 FDVSPTVCSDISSEEN 89 + S D E Sbjct: 61 LNFSNVNLIDNPQREE 76 >gi|239629798|ref|ZP_04672829.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527410|gb|EEQ66411.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 344 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 47/92 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR RR+ LG++QE+L +G++ V K+EKGV+ + L ++ +L + ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVSYPDITLLPALARILGTDVNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S T+ + S + + G Q Sbjct: 61 LLTFSVTMDPEESRHLYEKLMTTAKDAGWQAA 92 >gi|223041672|ref|ZP_03611869.1| hypothetical protein AM202_0280 [Actinobacillus minor 202] gi|223017536|gb|EEF15950.1| hypothetical protein AM202_0280 [Actinobacillus minor 202] Length = 234 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG+ IRL R G++ + + + KYEKG + L IS+ L+ + Sbjct: 3 INQEVGQLIRLARKKRGLTLNDFSKLIYKNPSTISKYEKGEIIIDIPTLYAISKALDVEM 62 Query: 71 SFFF 74 Sbjct: 63 DQLL 66 >gi|160894211|ref|ZP_02074989.1| hypothetical protein CLOL250_01765 [Clostridium sp. L2-50] gi|156864244|gb|EDO57675.1| hypothetical protein CLOL250_01765 [Clostridium sp. L2-50] Length = 203 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 37/77 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R + +SQEKL + + ++ Q + +E + + L +SE+ + + Sbjct: 9 MELGKQIKKHRQEVQLSQEKLADRVYVSRQTISNWENDKSYPDVNSLVLLSEIFQISLDN 68 Query: 73 FFDVSPTVCSDISSEEN 89 V D+ +E Sbjct: 69 LIKGDIEVMKDVIQKEE 85 >gi|52842770|ref|YP_096569.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629881|gb|AAU28622.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 225 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +GKRI R G++++ L + I ++ +E G G + +++ LE Sbjct: 2 SIREKIGKRIHEARKAKGLTRQALADLTDDIKPSRINNWEHGTRMPGPEEITQLAQALEV 61 Query: 69 PISFFFDVSPTVCSD 83 SF +S D Sbjct: 62 SPSFLMGLSDERDGD 76 >gi|84385211|ref|ZP_00988243.1| DNA-binding protein [Vibrio splendidus 12B01] gi|84379808|gb|EAP96659.1| DNA-binding protein [Vibrio splendidus 12B01] Length = 188 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 4/132 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG ++ R G S +K + G++ + + E+G + ++L I+ E +S Sbjct: 5 IKVGVNLKRLRQEKGWSLDKTAKETGVSKAMLGQIERGESSPTVAKLWQIASGFEVSLSS 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F S + N + G ++ F + + +I EL ++ + Sbjct: 65 FIAASSNSELTSLFRDANELRHEEYNIGFFVSLLFP--FEEALGFEIFEL--TLAPDYQH 120 Query: 133 YRTIEEECMVEQ 144 + E Sbjct: 121 ESAPHNAGVTEH 132 >gi|326693523|ref|ZP_08230528.1| XRE family transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 183 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 32/92 (34%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ +R + ++Q L L ++ + + +E G + IS+ L + F Sbjct: 7 IKEKRKKMSLTQMDLANKLLVSNKTISNWETGKTLPDIENIILISKYLNLSLDDLFLGDE 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 T+ + + + L F I Sbjct: 67 TMVEKLRENQQERKFYRVVKISLVSAMIFGTI 98 >gi|309777464|ref|ZP_07672419.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308914778|gb|EFP60563.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 118 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 47/103 (45%), Gaps = 2/103 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +++G +I+ R G+SQ++L +GI+ + EK + +LQ + VL Sbjct: 5 VCMHIGGKIKDLRKQRGLSQKELASSIGISASFLSDIEKERSNPSFDKLQRLCVVLNVQP 64 Query: 71 SFFF--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 +F + + + + + +E +M + T D L + + Sbjct: 65 GYFLSHENTYSEYNSLYTEIMKLMKCVETWDEADLLELYNYLK 107 >gi|296110822|ref|YP_003621203.1| hypothetical protein LKI_03460 [Leuconostoc kimchii IMSNU 11154] gi|295832353|gb|ADG40234.1| hypothetical protein LKI_03460 [Leuconostoc kimchii IMSNU 11154] Length = 93 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 27/70 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G IR R ++Q +L + L +T + YE G L I+ L + ++ Sbjct: 24 KHIGNNIRYLRYANKITQYQLAKILHVTQSTIAHYENGTRIPDIDNLMDIARNLGADMNI 83 Query: 73 FFDVSPTVCS 82 S Sbjct: 84 MTSFHDDGMS 93 >gi|315500763|ref|YP_004089564.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315418775|gb|ADU15413.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 68 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ ++ R G++QE L G++ Q + E+G + IS+ L Sbjct: 1 MVGENLKRLRQEKGLTQEVLESRSGLSQQYLSGLERGKRNPTIITVYEISQALGVHYLEL 60 Query: 74 FDVSPTV 80 P Sbjct: 61 LRPLPDS 67 >gi|300362438|ref|ZP_07058614.1| helix-turn-helix domain protein [Lactobacillus gasseri JV-V03] gi|300353429|gb|EFJ69301.1| helix-turn-helix domain protein [Lactobacillus gasseri JV-V03] Length = 95 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE L E + ++ Q V K+E + ++ ++SE+ + Sbjct: 1 MRLGQKIADLRKKNNLSQEGLAEKMNVSRQAVSKWESEQSIPDIEKIVNLSELFGVTTDY 60 Query: 73 FFDVSPTVCSDISSEENN 90 + + N+ Sbjct: 61 LLKSGEPSFELKNEDIND 78 >gi|259907780|ref|YP_002648136.1| Putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|259909771|ref|YP_002650127.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|259909778|ref|YP_002650134.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224963402|emb|CAX54890.1| Putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224965393|emb|CAX56925.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224965400|emb|CAX56932.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|283477642|emb|CAY73558.1| HTH-type transcriptional regulator immR [Erwinia pyrifoliae DSM 12163] Length = 132 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 44/112 (39%), Gaps = 8/112 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R ++Q +L L I + + ++E+G + + +++ LE + Sbjct: 17 GKRLAALRKERQLTQIELANLLDIQPRMLGRWEQGQVKPQFDYIIKLAQFLEVSTDYMLL 76 Query: 76 VSPTVCSDISSEENNVMDFISTP------DGLQLNRYF--IQIDDVKVRQKI 119 + + +N + + + + +F + I KVRQ I Sbjct: 77 GEEDTAAPVFDIKNKRLKELCKQVDGLKTEDQDMICHFLDMAITQEKVRQAI 128 >gi|169824019|ref|YP_001691630.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] gi|167830824|dbj|BAG07740.1| putative transcriptional regulator [Finegoldia magna ATCC 29328] Length = 176 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 37/76 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + I+ R G+SQE+L + + Q V K+E+G++ + L +SE+L++ +S Sbjct: 2 KMLNENIKSLRKQNGLSQEQLANEMHVVRQTVSKWERGLSVPDSDSLIKLSEILQTSVSV 61 Query: 73 FFDVSPTVCSDISSEE 88 + ++ Sbjct: 62 LLGENVEETEQSELDK 77 >gi|167465058|ref|ZP_02330147.1| SOS-response transcriptional repressor [Paenibacillus larvae subsp. larvae BRL-230010] Length = 211 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 4/110 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +KK + I+ R GM+Q L + LG+ V +EK A ++ Sbjct: 1 MDDKK----IKEIFAANIKRLRKSRGMTQGDLAKILGVGISTVSDWEKAKKYPRAGVIEK 56 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 +S+ + P S FF+V E+ + I + +I+ Sbjct: 57 LSQYFDMPKSSFFEVQGNAIEVYIEEDLVKIPIIGKVSCGNGVIAYEEIE 106 >gi|150009363|ref|YP_001304106.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|255016216|ref|ZP_05288342.1| transcriptional regulator [Bacteroides sp. 2_1_7] gi|256842368|ref|ZP_05547871.1| transcriptional regulator [Parabacteroides sp. D13] gi|262384722|ref|ZP_06077855.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|298377851|ref|ZP_06987801.1| DNA-binding protein [Bacteroides sp. 3_1_19] gi|301312270|ref|ZP_07218187.1| DNA-binding protein [Bacteroides sp. 20_3] gi|149937787|gb|ABR44484.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|256735975|gb|EEU49306.1| transcriptional regulator [Parabacteroides sp. D13] gi|262293703|gb|EEY81638.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|298265297|gb|EFI06960.1| DNA-binding protein [Bacteroides sp. 3_1_19] gi|300829692|gb|EFK60345.1| DNA-binding protein [Bacteroides sp. 20_3] Length = 193 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 56/133 (42%), Gaps = 10/133 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +GN KI +G +I+ R +S E++ E G+ +Q+++ E ++ + L Sbjct: 1 MGNNKI-------IGAKIKNIRESKQLSIEEVAERSGLGIEQIERIEGNLDFPSLAPLIK 53 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMD---FISTPDGLQLNRYFIQIDDVKVRQK 118 I+ VL + F D + + ++++ D F + + + + K + Sbjct: 54 IARVLGVRLGTFLDDQAELGPVVCRKKDSEADGIGFTNNATQGHKHMDYHSLSQDKSGRH 113 Query: 119 IIELVRSIVSSEK 131 + + I SE+ Sbjct: 114 MEPFLIEIAPSEE 126 >gi|116751125|ref|YP_847812.1| molybdate metabolism transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116700189|gb|ABK19377.1| transcriptional regulator of molybdate metabolism, XRE family [Syntrophobacter fumaroxidans MPOB] Length = 374 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 26/69 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R G+SQ +L +G+ Q + E G + +I+ L + F + Sbjct: 13 NLKSARKARGLSQSELAGRVGVKRQAIYDMESGRYLPNTALALYIARELGCRVEDLFVLE 72 Query: 78 PTVCSDISS 86 + + Sbjct: 73 ESEEEQPVT 81 >gi|332886358|gb|EGK06602.1| hypothetical protein HMPREF9456_00476 [Dysgonomonas mossii DSM 22836] Length = 192 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 2/110 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+RIR R +S + E G+ +QV E+ + L I+ VL + Sbjct: 4 NKRIGERIREIRESKSISLADMIERSGLAEKQVVAIEETGGIPSLAPLIKIARVLGVRLG 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY--FIQIDDVKVRQKI 119 F D IS +E + ++ + + K + + Sbjct: 64 TFLDDVDESGPVISRKEQYNKSISFSTKDTSSVKHMDYYSLSSTKSGRHM 113 >gi|325830857|ref|ZP_08164241.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325487264|gb|EGC89707.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 197 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R G++Q +L + LG+T + V K+E+G L +SE L +P+ D Sbjct: 7 GTLIRALREERGLTQRQLADALGVTDKAVSKWERGGGCPDVELLPGLSERLGTPVETLLD 66 Query: 76 V 76 Sbjct: 67 G 67 >gi|254555955|ref|YP_003062372.1| transcription regulator [Lactobacillus plantarum JDM1] gi|308179947|ref|YP_003924075.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044882|gb|ACT61675.1| transcription regulator [Lactobacillus plantarum JDM1] gi|308045438|gb|ADN97981.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 183 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 11/132 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G +I+ +R SQ+ + E L ++ Q + K+E G + L +S++ Sbjct: 3 IVIGSKIKEQRQQHEWSQQTVAERLHVSRQTISKWELGKSYPDLELLVALSKLFAVSTDE 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK---IIELVRSIVSS 129 +S + + + + R I +LV ++ ++ Sbjct: 63 LLGLSRRPVQ-----RPWWQLLLRKRSRTDMTVKWYSGGQDRARVAVGIISDLVANLNTT 117 Query: 130 EKKYRTIEEECM 141 ++ + + Sbjct: 118 NEQ---PLRQLL 126 >gi|170760210|ref|YP_001786158.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407199|gb|ACA55610.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 201 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ K+I+ R+ +SQE L E + +T Q + +E G N + L +S + + Sbjct: 1 MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI 60 Query: 73 FFDVSPTVCSDISSEEN 89 + E+ Sbjct: 61 LVKGDLEEMKEEIKTED 77 >gi|73541020|ref|YP_295540.1| anaerobic benzoate catabolism transcriptional regulator [Ralstonia eutropha JMP134] gi|72118433|gb|AAZ60696.1| transcriptional regulator, XRE family with shikimate kinase activity [Ralstonia eutropha JMP134] Length = 309 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 18/141 (12%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P +G+RIR R GMS++ L ++ + + E G L+ ++ L+ Sbjct: 23 DPYLTQLGERIRSLRAARGMSRKDLARGADVSERYLANLETGTGNASVLLLRQVARALDV 82 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR-------YFIQIDDVKVRQKIIE 121 P+ + +E ++ +++ L R + R + I Sbjct: 83 PLPVVLAEVDGLNGQQVTEFAQLVQWLAQLPTGDLARVRDACRHALAPAESRDARHRRIA 142 Query: 122 LV-----------RSIVSSEK 131 L+ R++ ++E Sbjct: 143 LIGLRGAGKSTLGRALAAAED 163 >gi|45259348|emb|CAF32982.1| 4100 protein [Pseudomonas putida] Length = 129 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 12/121 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R LGM+Q G+ G+ KYE G A L ++ + Sbjct: 5 GPRLREERERLGMTQRVFGDIGGVEPNAQGKYESGERTPRADYLAALAAQ-GMDALYVLS 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 T + ++ L F Q+ + + L+ + K T Sbjct: 64 GVRTPAPLGNLTQDE----------ADLLGAFRQLPVDD-QAALWHLLGRLSGEVKSRET 112 Query: 136 I 136 + Sbjct: 113 V 113 >gi|319945880|ref|ZP_08020130.1| hypothetical transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747945|gb|EFW00189.1| hypothetical transcriptional regulator [Streptococcus australis ATCC 700641] Length = 228 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 52/115 (45%), Gaps = 26/115 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L M+Q+ + + LGIT+Q +E+GV + +++ + ++L+ PI +F + Sbjct: 5 EKLKARRKELKMTQKDIADQLGITYQAYSAWERGVKKPSKEKVKLLEQILDVPIGYFTE- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 L++ R + + D + VR++ ++ Sbjct: 64 ------------------------LEIVRLYNTLSDEGKNNA-LSYVRNLAQKKQ 93 >gi|315122488|ref|YP_004062977.1| hypothetical protein CKC_03700 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495890|gb|ADR52489.1| hypothetical protein CKC_03700 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 185 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 2/97 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V KKI +P +G R++ R GM+Q + G +G+T + K E G Sbjct: 85 VQTKKIIDP--HAIGARLKAIRKDEGMTQGEFGALVGLTHTGISKIETGHRTPEIKTALK 142 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 I L + + + + + +F+ Sbjct: 143 IKRSLGKTLDWIYFGDEEIIPKKNRLRAKQSNFLHES 179 Score = 39.8 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 1/92 (1%) Query: 4 NKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K++ N ++ +G+R R R G + + + V KYE GV + + Sbjct: 2 EKELKNTLNWKEIGQRFRDLRERNGYERSDIIKKTDDQGGAVYKYESGVQPASTNYALFL 61 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDF 94 + + +D T + ++D Sbjct: 62 RNEFGASFDWLYDGVETRRKYKDVQTKKIIDP 93 >gi|255527936|ref|ZP_05394778.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255508363|gb|EET84761.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 183 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP+ + + ++ R+ +S +L E G++ + + EKG + + + I++ L Sbjct: 4 NPI---IAENLKRLRLERNLSLGQLAELSGVSKVMLSQIEKGDSNPTINTVWKIAKGLNV 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMD 93 P + D S + E + Sbjct: 61 PYTVLIDKHEDETSVVKKSEAEYQN 85 >gi|229084781|ref|ZP_04217041.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] gi|228698528|gb|EEL51253.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] Length = 181 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G+S ++L IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKAKGLSSKELANMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + T D+ N I +L Sbjct: 63 SFL-LEETNTDDLIVRSNKRKKMIIDNLSYELL 94 >gi|163736142|ref|ZP_02143561.1| transcriptional regulator, putative [Phaeobacter gallaeciensis BS107] gi|161390012|gb|EDQ14362.1| transcriptional regulator, putative [Phaeobacter gallaeciensis BS107] Length = 437 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 10/127 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR++LG+ Q L + I+ + E R+G L ++ +L S Sbjct: 4 DTLTGSRIRERRLMLGLRQADLARQVKISASYLNLIEHNRRRIGGKLLVDLARMLAVEPS 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + E + +L+R + + + S++ Sbjct: 64 MLTEGAEVALLSTLREAAADL----PRPVAELDRV------DEFAGRFPGWAEVLAQSQQ 113 Query: 132 KYRTIEE 138 + ++E Sbjct: 114 RIASLER 120 >gi|295106591|emb|CBL04134.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Gordonibacter pamelaeae 7-10-1-b] Length = 215 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I+ R+ ++Q +LG+ G++ V ++E G +Q +++ S Sbjct: 1 MELGSNIKRLRVEHCLTQGELGKIAGVSPMAVSQWENGRAVPRMGAIQRMADYFGISKSS 60 Query: 73 FFDVSPTV 80 D + Sbjct: 61 LIDNAADG 68 >gi|256397793|ref|YP_003119357.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256364019|gb|ACU77516.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 200 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 4/93 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G++ L E GI + + E G + L ++EV P+ Sbjct: 21 AVGPRLRELRHRRGLTLADLAERTGINESTLSRLEGGARKPTLELLLPLAEVYAVPLDDL 80 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQ 102 P + + +S P G+Q Sbjct: 81 VGAPRTGDPRIHLRPVNRHGMTHIPLSQPGGVQ 113 >gi|228943343|ref|ZP_04105795.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228816323|gb|EEM62496.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 157 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 57/150 (38%), Gaps = 7/150 (4%) Query: 2 VGNKKIPNPV---DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 + +K+ + + + +G RI+ R ++Q++L E +G++ + + YE Sbjct: 1 MNSKRTISSIREVNNMIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDV 60 Query: 59 LQHISEVLESPISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 L +++ + P E++ LQ + + Sbjct: 61 LTKLADCFSVSADYLLGRSVTDEPNEQVTPKDEKDIAKRMEEIKKDLQGEDGLMFSGEPM 120 Query: 115 VRQKIIELVRSIVSSEKKYRTIEEECMVEQ 144 ++ + L+ ++ K+ + I ++ + ++ Sbjct: 121 SQEAVDSLLDAMEYIVKQTKVINKKYVPKK 150 >gi|166091592|ref|YP_001654042.1| putative transcriptional regulator [Bacillus thuringiensis] gi|165875369|gb|ABY68524.1| putative transcriptional regulator [Bacillus thuringiensis] Length = 130 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 6/119 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + G+ +R+ R + G++ ++LG+ LG+ + +E LQ IS Sbjct: 2 IQNYFGENVRILRTLKGLNMKELGDVLGVASSTISNWENNRKEPSFEMLQKISIYFNVST 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVRSI 126 + +++E+ I L + I D + ++IE + + Sbjct: 62 DRLLNHKIGDSEALTTEDRK---LIVERLAQDLYESYKSIPDKDKPLLENELIEYAKYL 117 >gi|125717479|ref|YP_001034612.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125497396|gb|ABN44062.1| Transcriptional regulator (XRE family), SOS-response transcriptional repressors (RecA-mediated autopeptidases), putative [Streptococcus sanguinis SK36] Length = 225 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 49/106 (46%), Gaps = 11/106 (10%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ S+F D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQESYFVDE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + ++ P ++++ ++ + + +KI L Sbjct: 65 ---------TSALYTYPLLTLPHKKEVDQLASRLLERQ--RKISSL 99 >gi|331268528|ref|YP_004395020.1| DNA-binding protein [Clostridium botulinum BKT015925] gi|329125078|gb|AEB75023.1| DNA-binding protein, putative [Clostridium botulinum BKT015925] Length = 185 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R+ G++Q L ++ + + E+ + + L I E L + + Sbjct: 7 MKIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNLKD 66 Query: 73 FFDVSPTVCSDISSEE 88 FF+ S E+ Sbjct: 67 FFNDEEEEKIVFSKED 82 >gi|295107230|emb|CBL04773.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 69 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 23/67 (34%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G RI+ R + Q E G+ + E G VG ++ I+ Sbjct: 2 DIRKALGLRIKELREERDLPQRAFAEASGLDRSYLAAIENGQINVGIKTVERIAAGFGIS 61 Query: 70 ISFFFDV 76 + F Sbjct: 62 VEQLFKG 68 >gi|255527984|ref|ZP_05394823.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296186285|ref|ZP_06854689.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255508314|gb|EET84715.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296049086|gb|EFG88516.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 184 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ +GK + R G+S +K+ E G++ + + EKG++ + L I+ L Sbjct: 3 DFNLIIGKNLNNIRRQKGLSLDKVAELTGVSKGMLAQIEKGISNPTVTTLWKIATGLNVS 62 Query: 70 ISFFFDVS 77 S+F + Sbjct: 63 FSYFMEEE 70 >gi|257125192|ref|YP_003163306.1| XRE family transcriptional regulator [Leptotrichia buccalis C-1013-b] gi|257049131|gb|ACV38315.1| transcriptional regulator, XRE family [Leptotrichia buccalis C-1013-b] Length = 255 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 61/128 (47%), Gaps = 4/128 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++++ R+ M+Q +L E LGI+ +QKYE G ++ + + ++ + Sbjct: 1 MKINEKLKDLRLKNNMTQRELAEKLGISIPTLQKYEYGTLKIKNEVILSLCDIFDISPDD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ-KIIELVRSIVSSEK 131 FF+ +DI E +N++ + + + + + + R+ + + ++ I + Sbjct: 61 FFN---EKRNDIFKETDNLLKELDKFKNTDIIKELDEFEKKEYRKNRALLVIEKIRKDMQ 117 Query: 132 KYRTIEEE 139 K IE++ Sbjct: 118 KKEEIEKQ 125 >gi|34558590|gb|AAQ75063.1| putative CI-like repressor [Lactobacillus phage JCL1032] Length = 120 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/114 (12%), Positives = 39/114 (34%), Gaps = 6/114 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G R+ R LG+S+ ++ L + +E G+ + +++ + Sbjct: 1 MSKALGSRLTQLRESLGLSKAEVARRLHVGNTSYSNWEYGLREPNVDMIVTLADFFDVST 60 Query: 71 SFFFDVSP---TVCSDISSEENNVMDFISTPDGL---QLNRYFIQIDDVKVRQK 118 + V + + +S L Y+ + + +R++ Sbjct: 61 DYLLGRDSGIWEVKEPAVHYDLGEDEPLSYRGVELPDDLKSYYRSMAETYIRKR 114 >gi|153938231|ref|YP_001390160.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152934127|gb|ABS39625.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295318252|gb|ADF98629.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 201 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ K+I+ R+ +SQE L E + +T Q + +E G N + L +S + + Sbjct: 1 MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI 60 Query: 73 FFDVSPTVCSDISSEEN 89 + E+ Sbjct: 61 LVKGDLEEMKEEIKTED 77 >gi|57641274|ref|YP_183752.1| transcription regulator [Thermococcus kodakarensis KOD1] gi|57159598|dbj|BAD85528.1| predicted transcription regulator, containing DNA-binding HTH domain [Thermococcus kodakarensis KOD1] Length = 65 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G++QE+L + LG+T Q + EKG I+ I F Sbjct: 3 NRLRELREERGLTQEELAKALGVTRQTIIAIEKGKYDPSLKLAFKIARFFGLNIEDIF 60 >gi|115359612|ref|YP_776750.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|170701460|ref|ZP_02892415.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171320762|ref|ZP_02909771.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|172064423|ref|YP_001812074.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115284900|gb|ABI90416.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] gi|170133622|gb|EDT01995.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171093979|gb|EDT39090.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171996940|gb|ACB67858.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 192 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 11/143 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 N + + +G +IR R L + + GI+ + + E+G+ + L Sbjct: 5 TENSRSADA--AALGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSLTSLAG 62 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I++ L + +F D S E+ F + F ++ +V +++ Sbjct: 63 IAQALGVTVQYFVDTPSEERSVCRGEQLRFFGFADS------ANLFARLTNVSEGRQLEA 116 Query: 122 LVRSIVSSEKKYR---TIEEECM 141 ++ + +K+ EE + Sbjct: 117 ILVRLPPGQKRSEVTTHAGEEFL 139 >gi|328945610|gb|EGG39761.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 225 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 51/111 (45%), Gaps = 9/111 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RRM L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + +++P +++++ ++ + + + + + + Sbjct: 65 ---------TSALYTYPLLTSPHKKEVDQFASRLLERQRKVSSLTAYKVLS 106 >gi|283832969|ref|ZP_06352710.1| transcriptional regulator, Cro/CI family [Citrobacter youngae ATCC 29220] gi|291071576|gb|EFE09685.1| transcriptional regulator, Cro/CI family [Citrobacter youngae ATCC 29220] Length = 200 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 36/104 (34%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V+ V +RI+ R MS ++L ++ + + E + L ++ + Sbjct: 16 STVNEAVSQRIKQYRKQKKMSLDELSRQANVSKGMLVEIEGCKANPSIALLCRLAAAMGV 75 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 ++ F DV + +E+ + G D Sbjct: 76 SVADFVDVGTKPTVHLIAEDEIPELWKGDKGGRARLLAGSGGPD 119 >gi|257874773|ref|ZP_05654426.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257808939|gb|EEV37759.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 112 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 12/118 (10%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R+ +Q+++ E +GIT YE G S LQ ++++ Sbjct: 6 IKELRLKKNFTQQEIAERIGITRPAYTAYELGKREPDFSTLQALADLFGVSTDQLLGRES 65 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + D + + + + + Q+I+ + I S E+K +TI Sbjct: 66 SS------------DPFLSENSVIVASAVDDSISPEGIQEILSFIDYIKSREQKKKTI 111 >gi|228963422|ref|ZP_04124583.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228796316|gb|EEM43763.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 115 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 43/112 (38%), Gaps = 5/112 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+R++ R + +++ LGI YE + A + ++++ + + Sbjct: 1 MNIGERLKYLRNKQKWTMKEISSKLGIGDSTYSGYETNYRKPDAEMICKLADLHNTTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + ++ N F + ++ + V + + +L+ Sbjct: 61 ILCKTDDPTLEKATSSNIKDFFDNQKLHWD----GKKLSEDDV-ESLKDLLE 107 >gi|291286857|ref|YP_003503673.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884017|gb|ADD67717.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 244 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 13/133 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G++I+ R I +Q K+ + L IT+Q Q +EK + ++ I+ L + Sbjct: 3 KHIGEKIKDLRRIKNYTQVKIADILSITYQTYQHHEK-TGNFDSHKIIKIANALGVDYNT 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV-----RSIV 127 FD+ + S +N + + + Y+ I + + E + S+ Sbjct: 62 IFDLE----TPASLAKNRYSSPLVSS---DVQVYYGNIPPDVINKNAFEFIPVRETESLA 114 Query: 128 SSEKKYRTIEEEC 140 S T + Sbjct: 115 GSSVMRITNNKTL 127 >gi|193071379|ref|ZP_03052295.1| putative repressor protein [Escherichia coli E110019] gi|192955295|gb|EDV85782.1| putative repressor protein [Escherichia coli E110019] Length = 219 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 39/88 (44%), Gaps = 5/88 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K + + +G R++ R G++Q +LG+ G+T + +EK +N G+ L Sbjct: 1 MQEKMMES-----LGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSK 55 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEEN 89 +++ L + S+ + + Sbjct: 56 LAQALGTTESYLLYGVSSPELSFVQSTS 83 >gi|261408465|ref|YP_003244706.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284928|gb|ACX66899.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 189 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ VG+ ++ R G+S + + E G++ + + E+G + S L I L Sbjct: 3 PIHKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLGIS 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMD 93 + + + T + +S ++ Sbjct: 63 FTTLIEEAETEVTVVSPDDVEPFH 86 >gi|21910500|ref|NP_664768.1| hypothetical protein SpyM3_0964 [Streptococcus pyogenes MGAS315] gi|21910882|ref|NP_665150.1| hypothetical protein SpyM3_1346 [Streptococcus pyogenes MGAS315] gi|28876248|ref|NP_795443.1| hypothetical protein SpyM3_0964 [Streptococcus pyogenes phage 315.2] gi|28876428|ref|NP_795613.1| hypothetical protein SpyM3_1346 [Streptococcus pyogenes phage 315.5] gi|28895430|ref|NP_801780.1| hypothetical protein SPs0518 [Streptococcus pyogenes SSI-1] gi|28895801|ref|NP_802151.1| hypothetical protein SPs0889 [Streptococcus pyogenes SSI-1] gi|21904699|gb|AAM79571.1| conserved hypothetical protein - phage-associated [Streptococcus pyogenes MGAS315] gi|21905088|gb|AAM79953.1| conserved hypothetical protein - phage-associated [Streptococcus pyogenes MGAS315] gi|28810676|dbj|BAC63613.1| hypothetical protein (phage associated) [Streptococcus pyogenes SSI-1] gi|28811050|dbj|BAC63984.1| hypothetical protein (phage associated) [Streptococcus pyogenes SSI-1] Length = 104 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G++Q+ L E + + ++ +Q++E + + + Q +++ + +++ Sbjct: 2 NRIKELRKEKGLTQQDLAEEIYVHYRTIQRWE-NEHIIALDQAQLLADHFDVSVAYLLGY 60 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN 104 S T + +V ++ + + Sbjct: 61 SDTTKDNKDFITISVKEYNELKNRSDVL 88 >gi|329930359|ref|ZP_08283948.1| methyltransferase domain protein [Paenibacillus sp. HGF5] gi|328935085|gb|EGG31571.1| methyltransferase domain protein [Paenibacillus sp. HGF5] Length = 272 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 3/111 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K I R ++QE L LG+TFQ V K+E G + L +S +L+ I Sbjct: 4 MLAKNINRYRKEQRLTQEGLAHKLGVTFQAVSKWETGQTMPDIALLPELSRLLDVSIDKL 63 Query: 74 FDVSPT--VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 F S T S E + T + I R +++++ Sbjct: 64 FGYSSTGKPISIYEEEYKTPEYYWGTEPNAACYQVLEMIP-PTKRVRLLDI 113 >gi|325121964|gb|ADY81487.1| hypothetical protein BDGL_000901 [Acinetobacter calcoaceticus PHEA-2] Length = 197 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 36/96 (37%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++I + +++R R+ G + + L ++ + E+G A L+ ++ L P Sbjct: 3 DINIRIAQQVREIRLARGYTLDILASRCQVSRSAISLIERGEASPTAVVLEKLANGLGVP 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 ++ FD S P+ + R Sbjct: 63 LTQLFDSPQNTQSPQPMVRRTQQAEWKDPETRYIRR 98 >gi|315640521|ref|ZP_07895629.1| DNA-binding protein [Enterococcus italicus DSM 15952] gi|315483725|gb|EFU74213.1| DNA-binding protein [Enterococcus italicus DSM 15952] Length = 209 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 34/76 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R +G +QE++ L ++ Q + +E + S L ++S+ + Sbjct: 1 MKIGEQLKRARSQIGKTQEEVANALHVSRQTISSWENKRSYPDISSLLNLSDYYNLSLDR 60 Query: 73 FFDVSPTVCSDISSEE 88 + +I E Sbjct: 61 LLKEDTGMIEEIKRNE 76 >gi|296450846|ref|ZP_06892596.1| DNA-binding protein [Clostridium difficile NAP08] gi|296879151|ref|ZP_06903146.1| DNA-binding protein [Clostridium difficile NAP07] gi|296260317|gb|EFH07162.1| DNA-binding protein [Clostridium difficile NAP08] gi|296429694|gb|EFH15546.1| DNA-binding protein [Clostridium difficile NAP07] Length = 169 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + I+ R G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 1 MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 74 FDV 76 Sbjct: 61 LGE 63 >gi|295094924|emb|CBK84015.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 133 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 8/121 (6%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF------ 72 +R R G++Q+ + L I+ YE+G N + +SE+L + Sbjct: 13 LRYFRQKAGLTQQDVAAALSISRSGYANYEEGRNIPNIEQAIKLSELLNHDFLYAYTLSS 72 Query: 73 -FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + P + + + + S + + + D RQ I V ++ S Sbjct: 73 RYMQGHPKPLQIVMEDNSYMTAIESNQSTADMLGNYRSLSDSD-RQLIDTFVANLASKNS 131 Query: 132 K 132 + Sbjct: 132 R 132 >gi|254487954|ref|ZP_05101159.1| transcriptional Regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] gi|214044823|gb|EEB85461.1| transcriptional Regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] Length = 183 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R+R R G+SQ +L G+T + EK + L+ + + + ++ Sbjct: 1 MDIGHRLRTIREERGLSQRELAAKAGLTNGTISLIEKNKTSPSVASLKSLLDAIPISMAE 60 Query: 73 FFDVSPTVCSD 83 FF + Sbjct: 61 FFSPLEDAETP 71 >gi|168184026|ref|ZP_02618690.1| transcriptional regulator, Cro/CI family [Clostridium botulinum Bf] gi|237794098|ref|YP_002861650.1| Cro/CI family transcriptional regulator [Clostridium botulinum Ba4 str. 657] gi|182672867|gb|EDT84828.1| transcriptional regulator, Cro/CI family [Clostridium botulinum Bf] gi|229260454|gb|ACQ51487.1| transcriptional regulator, Cro/CI family [Clostridium botulinum Ba4 str. 657] Length = 201 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ K+I+ R+ +SQE L E + +T Q + +E G N + L +S + + Sbjct: 1 MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI 60 Query: 73 FFDVSPTVCSDISSEEN 89 + E+ Sbjct: 61 LVKGDLEEMKEEIKTED 77 >gi|116250024|ref|YP_765862.1| transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254672|emb|CAK05746.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 192 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 1/92 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+ ++ +G RIR R ++ + L G++ + + E+ AS L I Sbjct: 4 KMEPELEQAIGIRIRTLRQEKALTLDDLAAASGVSRAMISRIERAEASPTASLLARICAA 63 Query: 66 LESPISFFF-DVSPTVCSDISSEENNVMDFIS 96 L +S FF + E+ D + Sbjct: 64 LGLSLSAFFAEEGQASPLARRQEQQVWRDPET 95 >gi|116495345|ref|YP_807079.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|116105495|gb|ABJ70637.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] Length = 344 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 47/92 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR RR+ LG++QE+L +G++ V K+EKGV+ + L ++ +L + ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELANKIGVSAPAVSKWEKGVSYPDITLLPALARILGTDVNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S T+ + S + + G Q Sbjct: 61 LLTFSVTMDPEESRHLYEKLMTTAKDAGWQAA 92 >gi|312897912|ref|ZP_07757326.1| helix-turn-helix protein [Megasphaera micronuciformis F0359] gi|310621007|gb|EFQ04553.1| helix-turn-helix protein [Megasphaera micronuciformis F0359] Length = 125 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 3/119 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +RIR R MSQ+KL + + + K E G + ++++ ++ L ++ Sbjct: 4 IYERIRRLRQENNMSQDKLAKKTGYTSRSTINKIEAGKIDISRAKIKVFADALGVTPAYL 63 Query: 74 FDVSPTVCSD--ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 E + + T +L + + +++++ + + E Sbjct: 64 MGWEDESEQGYYTDPEVAEYAEELRTNPKYRLLFNASKDLSKEDIDFVVDMIERLKARE 122 >gi|302531579|ref|ZP_07283921.1| transcriptional regulator [Streptomyces sp. AA4] gi|302440474|gb|EFL12290.1| transcriptional regulator [Streptomyces sp. AA4] Length = 82 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R G++QE+L E G+ + V + E+G+ + L ++ L + Sbjct: 13 IGERVREFRNKAGLNQEQLAEAAGVHWTFVSQVERGLRNINLHNLLKFADGLGVNPAKLV 72 Query: 75 DVSPTVCSDI 84 D Sbjct: 73 DGLRPPSDSD 82 >gi|226948085|ref|YP_002803176.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226843648|gb|ACO86314.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 201 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ K+I+ R+ +SQE L E + +T Q + +E G N + L +S + + Sbjct: 1 MDISKQIKKYRLDSKLSQEDLAEKVFVTRQTISNWENGKNYPDINSLVLLSTLFGVSLDI 60 Query: 73 FFDVSPTVCSDISSEEN 89 + E+ Sbjct: 61 LVKGDLEEMKEEIKTED 77 >gi|239626609|ref|ZP_04669640.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239516755|gb|EEQ56621.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 86 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI+ R G++QE+LG+ +G + Q + E IS+V I F F Sbjct: 3 NRIKELREERGLTQEQLGQMVGTSRQAINAIETEKFEPSIWLAYDISQVFNCSIEEVFLF 62 Query: 75 DVSPTVCSDISSEENNVMD 93 + S SS +N D Sbjct: 63 EDSTRKTRADSSRRDNNGD 81 >gi|167754531|ref|ZP_02426658.1| hypothetical protein CLORAM_00033 [Clostridium ramosum DSM 1402] gi|237733830|ref|ZP_04564311.1| transcriptional regulator [Mollicutes bacterium D7] gi|167705363|gb|EDS19942.1| hypothetical protein CLORAM_00033 [Clostridium ramosum DSM 1402] gi|229383168|gb|EEO33259.1| transcriptional regulator [Coprobacillus sp. D7] Length = 135 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + K+I+ R+ + ++QE + + L ++ Q + +E + +S++ + + Sbjct: 1 MEIAKKIKTARIKVELTQEHVADELQVSRQTISNWENAKTYPDIISIIKLSDLYQISLDE 60 Query: 73 FFDVSPTVCSDISSEEN 89 + ++ N Sbjct: 61 LLKGDDKMIEHLNESTN 77 >gi|152998873|ref|YP_001364554.1| XRE family transcriptional regulator [Shewanella baltica OS185] gi|151363491|gb|ABS06491.1| transcriptional regulator, XRE family [Shewanella baltica OS185] Length = 191 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 5/134 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K + G++ + + E+G + + L I+ + Sbjct: 4 INSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S F + +P + + + + +T L + + R +++ + Sbjct: 64 STFLEPTPQSQGTVFRKPDELRQQPATDGML-----VASLFPFEDRFGFEMFELTLLPNY 118 Query: 131 KKYRTIEEECMVEQ 144 ++ E + E Sbjct: 119 ERLSEPHEAGVTEH 132 >gi|256752787|ref|ZP_05493631.1| transcriptional regulator, XRE family [Thermoanaerobacter ethanolicus CCSD1] gi|256748321|gb|EEU61381.1| transcriptional regulator, XRE family [Thermoanaerobacter ethanolicus CCSD1] Length = 427 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I++G +I+ R+ +SQ +L + K E G +L +I+E L+ P+ Sbjct: 1 MNISIGTKIKSLRLQKKLSQSELCGNFM-NRVVLSKIENGKALPSLEQLIYIAEKLKVPV 59 Query: 71 SFFFDVSPTVCSDISSE 87 +FF ++E Sbjct: 60 GYFFSDLKDTSCINNAE 76 >gi|228968306|ref|ZP_04129303.1| hypothetical protein bthur0004_50850 [Bacillus thuringiensis serovar sotto str. T04001] gi|228791383|gb|EEM38988.1| hypothetical protein bthur0004_50850 [Bacillus thuringiensis serovar sotto str. T04001] Length = 218 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 40/81 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK I+ R +SQ++LGE G++ + V +EKG+ +Q I++ + S Sbjct: 1 MSIGKNIKKLRSKHNLSQKELGEIAGVSDKAVSTWEKGLKEPRMGAIQKIADHFKILKSD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + + I + + + Sbjct: 61 IIEDQDSKITHIRPNQPKIEN 81 >gi|206576130|ref|YP_002237033.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|206565188|gb|ACI06964.1| DNA-binding protein [Klebsiella pneumoniae 342] Length = 189 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 1 MVGNKK-IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M +++ P + +N+G +IR R G+S L + G++ + K E G + L Sbjct: 1 MADSERDKPAALSLNIGSKIRRLRQSRGISLNDLSKLSGVSKGALSKLESGSSSPRVDTL 60 Query: 60 QHISEVLESPISFFFDV 76 I+ L P+ Sbjct: 61 DAIATALRLPVGDLLSG 77 >gi|330448085|ref|ZP_08311733.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492276|dbj|GAA06230.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 208 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 1/93 (1%) Query: 2 VGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 V ++ P P+ + +G+R++ R+ G++ E+ + G+ + K E +Q Sbjct: 15 VEKEQSPQPIAPLKLGERLKEIRVSHGLTLEEASKLTGLARSTLSKIENEQISPTFQAMQ 74 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 ++ L I F+ + + + + Sbjct: 75 KLATGLAIDIPQLFEPPQAITATGRRDITRCGE 107 >gi|328947447|ref|YP_004364784.1| hypothetical protein Tresu_0542 [Treponema succinifaciens DSM 2489] gi|328447771|gb|AEB13487.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 71 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 3/74 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++ + + G R+R R+ G SQEK + + V E+G L Sbjct: 1 MTTEEQ---DILSDFGNRLRKLRIEKGFSQEKFADLTQLDRTYVSGLERGKRNPSYLILL 57 Query: 61 HISEVLESPISFFF 74 I++ L + F Sbjct: 58 KIAKSLNISVKDLF 71 >gi|294501848|ref|YP_003565548.1| Cro/CI family transcriptional regulator [Bacillus megaterium QM B1551] gi|294351785|gb|ADE72114.1| transcriptional regulator, Cro/CI family [Bacillus megaterium QM B1551] Length = 140 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 14/108 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI+ R+ G SQE+L L ++ + K+E + + + + Sbjct: 5 GERIKHFRLKGGFSQEELANQLNVSRTTISKWECSKQTPSIFDFLSLCNCFQITLDQLIE 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 S + D + L L R + + + I+ L+ Sbjct: 65 PS-----------SYKQDHLHDFQLLYLTR---KCESDSHDETILTLI 98 >gi|255306892|ref|ZP_05351063.1| putative phage repressor [Clostridium difficile ATCC 43255] Length = 169 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + I+ R G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 1 MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 74 FDV 76 Sbjct: 61 LGE 63 >gi|167770329|ref|ZP_02442382.1| hypothetical protein ANACOL_01672 [Anaerotruncus colihominis DSM 17241] gi|167667651|gb|EDS11781.1| hypothetical protein ANACOL_01672 [Anaerotruncus colihominis DSM 17241] Length = 70 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R +SQ+ + E L ++ YE G + L ++ + I + + Sbjct: 3 ERIRNMREDKDLSQKDMAEILHVSQTTYSDYELGKINIPTQTLIKLASFHHTSIDYLLGL 62 Query: 77 SPTVCS 82 + S Sbjct: 63 TDNPAS 68 >gi|30020775|ref|NP_832406.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229127990|ref|ZP_04256973.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] gi|29896327|gb|AAP09607.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] gi|228655457|gb|EEL11312.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] Length = 119 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 31/75 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ IR R G++QE+L E + + + E+G + LQ I+ LE Sbjct: 8 VGENIRFLRKKRGLTQEELAEQINLQQAYIGGVERGERNISMLTLQKIAVGLEVSPDEVL 67 Query: 75 DVSPTVCSDISSEEN 89 + S D E Sbjct: 68 NFSNVNLIDNPQREE 82 >gi|220931592|ref|YP_002508500.1| helix-turn-helix domain protein [Halothermothrix orenii H 168] gi|219992902|gb|ACL69505.1| helix-turn-helix domain protein [Halothermothrix orenii H 168] Length = 301 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/131 (15%), Positives = 44/131 (33%), Gaps = 4/131 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R + Q+ L LG+ + YE+ + L +++ I + Sbjct: 6 SRLRSLRKEKKLRQKDLAGALGVAQTTIANYEQNLRFPNQDILNKLADYFNVSIDYLLGR 65 Query: 77 S----PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 S PT + + + + Y + + R I + V + + Sbjct: 66 SCLRQPTNFTSFKNNHITGENINYSKIIDSYINYILNGNQESARNLISKTVVQGATIKDI 125 Query: 133 YRTIEEECMVE 143 Y + E+ + + Sbjct: 126 YLKVLEKALKK 136 >gi|319936355|ref|ZP_08010771.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319808470|gb|EFW05022.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 176 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 38/95 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R G+SQE+L + L ++ Q V K+E+G+ +L +S L + Sbjct: 6 NLKQMRKKKGISQEELAQLLNVSRQAVSKWEQGIGYPEVEKLLILSSQLNVSLDSLMADE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + + IS+ DG + + + Sbjct: 66 IINNNTSQDNHCSGRILISSYDGKSIVNCYKILSS 100 >gi|295691909|ref|YP_003600519.1| transcriptional regulator [Lactobacillus crispatus ST1] gi|295030015|emb|CBL49494.1| Transcriptional regulator [Lactobacillus crispatus ST1] Length = 272 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 12/110 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R L ++Q ++ + I+ K EKG NR+ L I ++ + Sbjct: 1 MTIGEALKKLRQSLELTQAQMIQGSKISITHYSKMEKGQNRIFVDDLMLILQLHGVSPAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ--IDDVKVRQKII 120 FF D IS+ +LNR F + I K QK+I Sbjct: 61 FF----------KEYFPTKEDTISSKISQELNRSFYKNDIKKAKELQKLI 100 >gi|290476510|ref|YP_003469415.1| putative repressor of flagellae [Xenorhabdus bovienii SS-2004] gi|289175848|emb|CBJ82651.1| putative repressor of flagellae [Xenorhabdus bovienii SS-2004] Length = 92 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 42/66 (63%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V + VGKRI+++R +GM+ +L + + ++ QQ+ +YE+G N++ L +S L++P Sbjct: 3 VSMLVGKRIQIKRKEIGMTVAELADRISVSQQQLSRYERGTNKISLEHLVDVSIALKTPA 62 Query: 71 SFFFDV 76 +F + Sbjct: 63 DWFLED 68 >gi|289168608|ref|YP_003446877.1| transcriptional regulator [Streptococcus mitis B6] gi|288908175|emb|CBJ23017.1| transcriptional regulator [Streptococcus mitis B6] Length = 228 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 52/126 (41%), Gaps = 28/126 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ E LG++FQ +E+G+ ++ + +L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEQLGVSFQAYSAWERGIKEPSKEKVSQLENILKVAKGYF--- 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE--KKYR 134 +++ R + + + ++K++ R + E +K Sbjct: 62 ----------------------TQIEIVRLYHSLSK-QGKEKVVLYARDLAQEEQVQKVI 98 Query: 135 TIEEEC 140 I E Sbjct: 99 AIPERL 104 >gi|225571231|ref|ZP_03780229.1| hypothetical protein CLOHYLEM_07320 [Clostridium hylemonae DSM 15053] gi|225160062|gb|EEG72681.1| hypothetical protein CLOHYLEM_07320 [Clostridium hylemonae DSM 15053] Length = 233 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 37/77 (48%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D NVGK I+ R+ ++ E+L + + + + KYEKG+ + + L+ I++V + Sbjct: 2 AIDENVGKNIKKYRLAYKLTLEELAKKIHKSKSTMSKYEKGLISLDVATLEEIADVFQIS 61 Query: 70 ISFFFDVSPTVCSDISS 86 ++ V Sbjct: 62 PAYLLAVQDEELHSRLE 78 >gi|169828330|ref|YP_001698488.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168992818|gb|ACA40358.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 148 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 32/73 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G IR+ R +SQE+L E + ++ Q + K+E G + + + ++ + I Sbjct: 4 MIGMNIRVLRKRHKLSQEQLAEKVNVSRQTIAKWENGEAIPDIYKFKMLGDIFQVTIDQL 63 Query: 74 FDVSPTVCSDISS 86 ++ S Sbjct: 64 SQNLNEEEANRIS 76 >gi|148258862|ref|YP_001243447.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146411035|gb|ABQ39541.1| putative transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 112 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 49/117 (41%), Gaps = 13/117 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R++ R + G+SQ + + LG+ + + E G RV A L ++E + +++ Sbjct: 1 MQIAERLKEARKLAGLSQSHVAKMLGLHRPSISEMEAGNRRVSADELARLAETYDVSVAW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 +P + L+L + +++++L+ ++ S Sbjct: 61 LLGEAPETLD-------------AQDPRLELAARELSKLKPDDLERLLKLLAAMRSD 104 >gi|319424700|gb|ADV52774.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] Length = 188 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 48/134 (35%), Gaps = 5/134 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K + G++ + + E+G + + L I+ + Sbjct: 4 INSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S F + +P + + + + +T L + + R +++ Sbjct: 64 STFLEPTPQSQGAVFRKPDELRQQPATDGML-----VASLFPFEERFGFEMFELTLLPHY 118 Query: 131 KKYRTIEEECMVEQ 144 ++ E + E Sbjct: 119 ERLSEPHETGVTEH 132 >gi|47564876|ref|ZP_00235920.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228984110|ref|ZP_04144296.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47558249|gb|EAL16573.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228775638|gb|EEM24018.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 117 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 44/109 (40%), Gaps = 6/109 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R ++QE+LG +G++ + +EKG G L+ I++ + + Sbjct: 1 MIGEIIKKLRKEKNITQEQLGAAVGVSKMAISYFEKGKKAPGRETLEKIADFFNTTTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 S E + T +G + + + + ++ +L Sbjct: 61 LGRSDDP------ELTEFESRVVTEEGNNIIKLIETLPKEERQKAWEQL 103 >gi|326331894|ref|ZP_08198181.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] gi|325950391|gb|EGD42444.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] Length = 209 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R++ R ++ L E GI+ + + E G+ R +L ++ + Sbjct: 11 AVGPRLKQLRQRRDITLSHLAEETGISTSTLSRLEAGLRRPTLEQLLPLARAYGVTLDDL 70 Query: 74 FDVSPTVCSDISSEENNVMD 93 D PT I+ D Sbjct: 71 VDAPPTGNPRINLRPIPCAD 90 >gi|325282527|ref|YP_004255068.1| transcriptional regulator, XRE family [Deinococcus proteolyticus MRP] gi|324314336|gb|ADY25451.1| transcriptional regulator, XRE family [Deinococcus proteolyticus MRP] Length = 67 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI++ R G++Q +L + L ++ Q V E G ++ + I F Sbjct: 3 NRIKVLRAEHGLTQAELADRLDVSRQTVNALETGKYDPSLPLAFRLARLFGLRIEDIFQD 62 Query: 77 SPTVC 81 Sbjct: 63 EEAGG 67 >gi|323126522|gb|ADX23819.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 112 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R G++QE++ + LGI+ +EKG + +L I+ + + Sbjct: 1 MLSERLKTLRKEAGLTQEEVAKKLGISRPAYTYWEKGEKKPTPDKLTQIANLFGVSTDYL 60 Query: 74 FDVSPTVCSDISSEE 88 + D+S E Sbjct: 61 LNNQVDDEIDLSEVE 75 >gi|297617956|ref|YP_003703115.1| hypothetical protein Slip_1795 [Syntrophothermus lipocalidus DSM 12680] gi|297145793|gb|ADI02550.1| protein of unknown function DUF955 [Syntrophothermus lipocalidus DSM 12680] Length = 371 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R++ R ++G+SQ + L IT V E G L I+ P+SFFF Sbjct: 7 GERVKQARELIGLSQTEFARRLNITQPAVALIEAGRFTPSEELLNQIAFQTGFPVSFFF 65 >gi|262037710|ref|ZP_06011152.1| transcription regulator [Leptotrichia goodfellowii F0264] gi|261748182|gb|EEY35579.1| transcription regulator [Leptotrichia goodfellowii F0264] Length = 293 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 3/107 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R MSQEKL E LG++ Q V K+E G+ ++ ISE+ E I Sbjct: 5 EKLKSFRKQAKMSQEKLSEKLGVSRQAVTKWETGLGIPEIENIRAISELFEISIDELLSD 64 Query: 77 SPTVCSDIS---SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 V + ++L + I +KI Sbjct: 65 ELEVKKEKDYLFESITEYDIDSIKHYDIKLIGAYKIILTGYSGEKIY 111 >gi|257868167|ref|ZP_05647820.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257874560|ref|ZP_05654213.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257802281|gb|EEV31153.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808724|gb|EEV37546.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 77 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R ++Q ++ L ++ +YE G + L ++ ++ I + ++ Sbjct: 6 QRIRDLREDNDLTQRQIATLLNVSQSTYSRYENGALDIPIQTLIKLASHYDTSIDYLVNM 65 Query: 77 SPTVCSDISSEE 88 + S +SE Sbjct: 66 TDVRTSYKASEH 77 >gi|302524530|ref|ZP_07276872.1| predicted protein [Streptomyces sp. AA4] gi|302433425|gb|EFL05241.1| predicted protein [Streptomyces sp. AA4] Length = 178 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 3/125 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R + G++ +L + G++ + + E+GV ++ I+EVL+ P+ F Sbjct: 5 RIREFRTLRGLTVRQLADQAGVSTGLISQVERGVTDPSLETMRRIAEVLDIPLFSLFQEP 64 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 + ++ S + R ++V + ++E VSS++ Sbjct: 65 DEETVAVIRHDDRYR-ISSPHHAITYTRASPGGAKLEVLEGVLE--PGGVSSDELRSHPS 121 Query: 138 EECMV 142 EEC+V Sbjct: 122 EECVV 126 >gi|228953531|ref|ZP_04115575.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229079669|ref|ZP_04212202.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228703509|gb|EEL55962.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228806155|gb|EEM52730.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 184 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI- 70 DINVG +IR R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 DINVGHKIRAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST 97 +FF + + T + + + + F + Sbjct: 63 NFFLEDTNTEELVVRANQRKKITFPES 89 >gi|209515043|ref|ZP_03263912.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209504669|gb|EEA04656.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 183 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 37/94 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I V R++ R G+SQ +L + G+T + E+ L+ + E + + Sbjct: 1 MSIEVATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + FF + S ++ + + L L Sbjct: 61 AEFFTFELEAQRSVVSRRADMPNLGNESIELYLA 94 >gi|317472844|ref|ZP_07932154.1| hypothetical protein HMPREF1011_02504 [Anaerostipes sp. 3_2_56FAA] gi|316899686|gb|EFV21690.1| hypothetical protein HMPREF1011_02504 [Anaerostipes sp. 3_2_56FAA] Length = 302 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R MSQEK+ E L ++ Q V K+E G ++ I+ + + I + Sbjct: 5 KLKDLRRQAKMSQEKMAEKLRVSRQAVTKWETGAGVPDIENVKAIASLFDISIDELLESE 64 Query: 78 PTVCS 82 Sbjct: 65 ERSRQ 69 >gi|310659749|ref|YP_003937470.1| hypothetical protein CLOST_2450 [Clostridium sticklandii DSM 519] gi|308826527|emb|CBH22565.1| conserved protein of unknown function [Clostridium sticklandii] Length = 199 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 50/126 (39%), Gaps = 2/126 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+ I R G++Q+++ + L I+ + V K+E G+ + +SEVL + I Sbjct: 4 KKVGQLILKLRNEKGLTQKQVADSLNISNKTVSKWECGMGCPDVTLWTELSEVLGADILK 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + V ++ L R+ + +++ + E+ Sbjct: 64 LLEGELKPNKPDIGKIEKVKFYVCPSCNNILISTGEATISCCGRK--LAMLKPVPQQEEH 121 Query: 133 YRTIEE 138 TI+E Sbjct: 122 EVTIQE 127 >gi|308187448|ref|YP_003931579.1| hypothetical protein Pvag_1947 [Pantoea vagans C9-1] gi|308057958|gb|ADO10130.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 185 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 10/128 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+R+ R +G+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GRRLAQIRQTMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFFS 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI---VSSEK 131 + P + +++++ S L+L ID+ + ++ + L+ + S+ + Sbjct: 69 EPKPHAEPKVIVRASDLLEIGSQGVSLKL------IDNGRAQRTLGMLLETYQPGASTGE 122 Query: 132 KYRTIEEE 139 K R EE Sbjct: 123 KLRHPGEE 130 >gi|300769881|ref|ZP_07079761.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300763332|gb|EFK60148.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 139 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 5/141 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQ 60 + + PN I+ G+ ++ R +LG+ Q+ L E QQ + + A LQ Sbjct: 1 MTDTIHPNH-KIHQGRNVKRFREMLGIKQDALAYELGEDWNQQKVSLLEQKETIEAQLLQ 59 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 IS VL+ P+ + + T + K++ Sbjct: 60 QISAVLKIPVEAIQNFDEEKAIVNIQNNYEGSNPGVTNVAGY---QYNNECTFNPLDKMV 116 Query: 121 ELVRSIVSSEKKYRTIEEECM 141 EL ++ +K+ E+ + Sbjct: 117 ELYERMLQQQKEMIDRLEKLI 137 >gi|228969784|ref|ZP_04130548.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|228789936|gb|EEM37754.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] Length = 90 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ IR+ R G++QE+L E + + + E+G + LQ I+ LE Sbjct: 1 MVGENIRILRKKRGLTQEELAERINLQQAYIGGIERGERNISMLTLQKIAVGLEISPDKI 60 Query: 74 FDVSPTVCSDISSEEN 89 F+ S + +E Sbjct: 61 FNFSNINSLENPQQEE 76 >gi|326692328|ref|ZP_08229333.1| hypothetical protein LargK3_00985 [Leuconostoc argentinum KCTC 3773] Length = 241 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 35/74 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+L R G++Q L + L I++Q V +E+ ++ A L I E P F Sbjct: 1 MTIGHQIKLLRQSKGLTQRDLADTLYISYQAVSNWERHQSQPTADMLLAILEKYHLPHDF 60 Query: 73 FFDVSPTVCSDISS 86 F S C+ Sbjct: 61 FITQSKQQCTQEKE 74 >gi|323700119|ref|ZP_08112031.1| Cupin 2 conserved barrel domain protein [Desulfovibrio sp. ND132] gi|323460051|gb|EGB15916.1| Cupin 2 conserved barrel domain protein [Desulfovibrio desulfuricans ND132] Length = 186 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 46/132 (34%), Gaps = 4/132 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R +S E L ++ ++ E+ L ++ L + F Sbjct: 4 IGKRIRAYREKQNLSIEDLSNRTTLSEDFIRAVEEEDMYPSLRPLVKLARALGVRLGTFM 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI----IELVRSIVSSE 130 D + I + I PDG + F + K + + IEL+ E Sbjct: 64 DDHVSSDPLIIRLAEREEELIMHPDGKETGLIFHSLGKGKTDRHMEPFFIELMPESARDE 123 Query: 131 KKYRTIEEECMV 142 EE +V Sbjct: 124 SLSSHEGEEFIV 135 >gi|291618017|ref|YP_003520759.1| PuuR [Pantoea ananatis LMG 20103] gi|291153047|gb|ADD77631.1| PuuR [Pantoea ananatis LMG 20103] Length = 185 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 15/142 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P G+R+ R +G+SQ ++ E G+T + E+ S LQ Sbjct: 1 MNDANQAP-------GRRLSQIRQAMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQ 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + +V +S FF + + + I + ID+ ++ + Sbjct: 54 KLLKVYGLSLSEFFSEPHSQDAPNVVVRPEDLLEIGSRGV-----SLKLIDNGTPKRALG 108 Query: 121 ELVRSI---VSSEKKYRTIEEE 139 L+ + S+ +K EE Sbjct: 109 MLLETYLPGASTGEKLHHAGEE 130 >gi|254712684|ref|ZP_05174495.1| hypothetical protein BcetM6_04806 [Brucella ceti M644/93/1] gi|254715754|ref|ZP_05177565.1| hypothetical protein BcetM_04816 [Brucella ceti M13/05/1] gi|256015686|ref|YP_003105695.1| transcriptional regulator, putative [Brucella microti CCM 4915] gi|261217515|ref|ZP_05931796.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261320390|ref|ZP_05959587.1| transcriptional regulator [Brucella ceti M644/93/1] gi|255998346|gb|ACU50033.1| transcriptional regulator, putative [Brucella microti CCM 4915] gi|260922604|gb|EEX89172.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261293080|gb|EEX96576.1| transcriptional regulator [Brucella ceti M644/93/1] Length = 182 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + + + Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGM 60 Query: 71 SFFFDVSPTVC 81 + FF + P Sbjct: 61 AEFFALEPDAP 71 >gi|238917513|ref|YP_002931030.1| hypothetical protein EUBELI_01592 [Eubacterium eligens ATCC 27750] gi|238872873|gb|ACR72583.1| Hypothetical protein EUBELI_01592 [Eubacterium eligens ATCC 27750] Length = 107 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 36/82 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D ++G +++ R+ G++QE + + L +T + E G N + L + +E+ + Sbjct: 1 MDSDLGAKVKKLRIAHGLTQEDVAKALEVTPGYISNVENGRNLMTLRMLSYYAELTGVSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVM 92 + + + + + Sbjct: 61 DYLAGSVDKSYQNTALDNEIMQ 82 >gi|332798913|ref|YP_004460412.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696648|gb|AEE91105.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 184 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 36/78 (46%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + N+GK+++L R ++ +L E GIT + + E G + L+ IS L P+ Sbjct: 3 NANIGKKLQLYREQKKITMRELAEKAGITPSMLSQIENGQVNPSINTLKMISIALNVPMF 62 Query: 72 FFFDVSPTVCSDISSEEN 89 FF I +++ Sbjct: 63 KFFITDDDTKKYIVRKDS 80 >gi|323463235|gb|ADX75388.1| transcriptional regulator, putative [Staphylococcus pseudintermedius ED99] Length = 190 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 37/99 (37%), Gaps = 7/99 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG +IR+ R +SQ L E + ++ Q + +E L +S + + Sbjct: 1 MDVGNQIRIYRKERQLSQMALAEKIDVSTQTISNWENERTYPDLYHLIVLSSLFNVSLDQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 E N++D + +L F+ I Sbjct: 61 LVKGD-------VVEMKNIIDHYNMDRYGKLMLAFMLIA 92 >gi|319399924|gb|EFV88170.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909] Length = 189 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NV +I+ R G SQE L E + ++ Q + +E + L + ++ + + Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMCQLFKVSLDE 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGL 101 + +I E + + P L Sbjct: 61 LVEDDLKNVQIKNIKKELDFWTRMMIIPMLL 91 >gi|313885249|ref|ZP_07819001.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619940|gb|EFR31377.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 371 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +I++ R G++QE L E LG+T V K+E+G L I++ + + Sbjct: 6 AVGPQIKIFRKQKGLTQEALAEALGVTVSAVSKWERGQTLPDLPTLLEIAQFFQISLDVL 65 Query: 74 F 74 F Sbjct: 66 F 66 >gi|222087768|ref|YP_002546305.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725216|gb|ACM28372.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 227 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 37/89 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ ++ L Sbjct: 35 NNLEMAIGHEVRAYRKKLGITGADLASATGISLGMLSKIENGNTSPSLTTLQSLARALGV 94 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFIST 97 P++ FF + + + ++ Sbjct: 95 PVTAFFRRFEEKRNAVFVKAGEGLEMERR 123 >gi|219667464|ref|YP_002457899.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537724|gb|ACL19463.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 113 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 11/121 (9%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + V + +R R G++Q++L + LG+ + +EKG N + S L +I LE Sbjct: 3 AIKLRVAENLRKYRERKGITQKQLADHLGVRDNTISSWEKGTNSIDISTLLNICNFLEIN 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + +S S + E+ L L F ++ + K++ +V + Sbjct: 63 LDDIYGISDKKISPVELTEDE----------LALISNFRKLSHDN-KMKVLGMVELKAAE 111 Query: 130 E 130 + Sbjct: 112 D 112 >gi|42779243|ref|NP_976490.1| hypothetical protein BCE_0162 [Bacillus cereus ATCC 10987] gi|42735158|gb|AAS39098.1| Unknown-related protein [Bacillus cereus ATCC 10987] Length = 64 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 26/60 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R+ GM+Q +L + ++ Q + E+G + I + L ++ F Sbjct: 4 KVKRIRLEKGMTQGELAKLTNVSRQTIGLIEQGAYNPSLNLCIKICQTLGVTLNDLFWEE 63 >gi|253752177|ref|YP_003025318.1| DNA-binding membrane protein [Streptococcus suis SC84] gi|253754003|ref|YP_003027144.1| DNA-binding membrane protein [Streptococcus suis P1/7] gi|253755938|ref|YP_003029078.1| DNA-binding membrane protein [Streptococcus suis BM407] gi|251816466|emb|CAZ52102.1| putative DNA-binding membrane protein [Streptococcus suis SC84] gi|251818402|emb|CAZ56230.1| putative DNA-binding membrane protein [Streptococcus suis BM407] gi|251820249|emb|CAR46699.1| putative DNA-binding membrane protein [Streptococcus suis P1/7] gi|319758564|gb|ADV70506.1| putative DNA-binding membrane protein [Streptococcus suis JS14] Length = 158 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I+ R G++QE+ L +T Q V +E N L +S V + Sbjct: 4 GQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQLIL 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + + + T L + Sbjct: 64 GGTDMNNMTEKLVKDGREGRRTQMHLTIT 92 >gi|49188540|ref|YP_025638.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. maculicola] gi|47525123|gb|AAT35137.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. maculicola] gi|320321602|gb|EFW77709.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|330962559|gb|EGH62819.1| pbsX-like transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 116 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 11/119 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G RI+ R G++Q L E + + +YE+ +L ++E Sbjct: 1 MMSSIRKIIGSRIKAHRKSRGLTQSALAEAIECEVASIGRYERAETAPDGEQLIKMAE-- 58 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 FF++SP + + + + L R I+D +++I + + Sbjct: 59 ------FFEISPMDLLPVKIDVKLQAVLDLRSELIDLVRT---INDPSQLERLIGVAKE 108 >gi|254822427|ref|ZP_05227428.1| transcriptional regulator, XRE family protein [Mycobacterium intracellulare ATCC 13950] Length = 477 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 40/122 (32%), Gaps = 6/122 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q L LG++ V + E + L ++E + P +F Sbjct: 10 GARLRRLREEQGLTQVALARVLGLSTSYVNQLENDQRPITVPVLLTLTERFDLPSQYFAP 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S E + +L I Q ++ L R + + Sbjct: 70 ESDARLISDLREVLA-EAPATAGQVEELVARMPAIG-----QTLVNLHRRLHDTTADLEA 123 Query: 136 IE 137 + Sbjct: 124 LH 125 >gi|251790167|ref|YP_003004888.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538788|gb|ACT07409.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 77 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K + G+R++ R+ G+SQE + G+ + E+GV + Sbjct: 2 MLIGMKNTKDITARFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIG 61 Query: 61 HISEVLESPISFFFD 75 I++ LE + FD Sbjct: 62 VIADGLEIQLQSLFD 76 >gi|229083181|ref|ZP_04215564.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2] gi|228700099|gb|EEL52702.1| Helix-turn-helix domain protein [Bacillus cereus Rock4-2] Length = 214 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 44/107 (41%), Gaps = 1/107 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ M+ E+L E L ++ V ++ G S++ I+++L ++F D Sbjct: 5 GLKLSQLMKKNNMTDEQLAELLSVSRTTVLRWRNGERSPKMSKISQIAKILNVSATYFID 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ-IDDVKVRQKIIE 121 + + C + + + T + I D++V I++ Sbjct: 65 ENESYCPEDHAITKRNIPIYGTIAAGKPIEAIENVIGDIQVPDIILD 111 >gi|15891606|ref|NP_357278.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens str. C58] gi|15160044|gb|AAK90063.1| aldehyde dehydrogenase-like protein [Agrobacterium tumefaciens str. C58] Length = 182 Score = 49.8 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 35/84 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R+ +SQ +L G+T + E + L+ I + + + Sbjct: 1 MSVDLGGRLRHLRLRHNISQRELARRAGVTNSTISLIESNTSNPSVGALKRILDGIPIGL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF P + +++ Sbjct: 61 AEFFAFEPETSRKAFYRADELVEI 84 >gi|315300972|ref|ZP_07872315.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria ivanovii FSL F6-596] gi|313630659|gb|EFR98449.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria ivanovii FSL F6-596] Length = 111 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 1/107 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G++QE L E L T Q + +YE G + L ++++ + Sbjct: 3 LNKFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDVLFELAKIFNKRL 62 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 FF + + + +D T + L+ +I++ R Sbjct: 63 DDFFPERNLPPVDERGMTVAAHIDDDVTDEELRDILAYIEMKKKLHR 109 >gi|312127026|ref|YP_003991900.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311777045|gb|ADQ06531.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 267 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 4/127 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++Q +L E LGI + YE GV + LQ I+ + + +S Sbjct: 9 RLKELREEANLTQNELAEKLGIGRATLSNYELGVRKPDIDTLQKIAMYFDVSSDYLLGIS 68 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 D + + + + + + + I+ L ++ Y + Sbjct: 69 SIKKRDFLNSLGKITKEENIKELKDFFKNKENVK--AYFEYIVSLFEPLLKVISIYE--D 124 Query: 138 EECMVEQ 144 E+ +V++ Sbjct: 125 EKILVDK 131 >gi|298387797|ref|ZP_06997347.1| DNA-binding protein [Bacteroides sp. 1_1_14] gi|298259402|gb|EFI02276.1| DNA-binding protein [Bacteroides sp. 1_1_14] Length = 159 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 13/141 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G IR R+ M+QE L + + ++ V KYE+ + + L S L+ P + Sbjct: 11 VHHGHNIRRFRIEKNMNQEVLSQLVHLSQSAVSKYEQ-MRVIDDEMLHRFSRALDVPFEY 69 Query: 73 FFDVSPTVCSDISSEENNVMDFIST---PDGLQLNRYF---------IQIDDVKVRQKII 120 + + + T L + + ++++ +KI Sbjct: 70 LKSLEEDAQTVVFENNTVNDSEQYTGGAKISLGTVKSYTEDSDNSVDNRVNNFNPIEKIT 129 Query: 121 ELVRSIVSSEKKYRTIEEECM 141 EL ++ + + E + Sbjct: 130 ELYERLLKEKDEKYAALERRL 150 >gi|257877834|ref|ZP_05657487.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257812000|gb|EEV40820.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 168 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G++I+ R ++QE+ L +T Q V +E N L I+ + E + Sbjct: 12 MEFGEKIKEVRTRNNLTQEQFATQLHVTRQAVSNWENNRNLPDLEMLIAIATIFELSLDE 71 Query: 73 F 73 Sbjct: 72 L 72 >gi|239814884|ref|YP_002943794.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801461|gb|ACS18528.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 70 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + GKR+R R +SQE+ G+ V E+GV + ++ ++ L Sbjct: 3 SLSVRFGKRLRELRKERDLSQEEFAAHCGLDRTYVSGMERGVRNPSLAVIETLAGALGIR 62 Query: 70 ISFFFDV 76 + F Sbjct: 63 VEELFRG 69 >gi|325264127|ref|ZP_08130859.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324030611|gb|EGB91894.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 201 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 37/80 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ RR L MSQE + + LGI+ Q V K+E G + + L ++ + E IS Sbjct: 1 MALSENIKARRTQLKMSQEYVADQLGISRQAVAKWEAGTSEPTSKNLSELAFLFEISISE 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 D + E+ Sbjct: 61 LVDPQTYAEEQAAQEQKFRD 80 >gi|312888142|ref|ZP_07747725.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311299409|gb|EFQ76495.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 69 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + VG RIR R G+SQ+ L + + E G + L+ I++ L+ + Sbjct: 3 IKSKVGSRIREIREKNGISQKDLSYTADLDRSYIASVENGQRNISIVNLEKIAKALKVNL 62 Query: 71 SFFFDV 76 S F Sbjct: 63 SELFQG 68 >gi|307711152|ref|ZP_07647574.1| putative transcriptional regulator [Streptococcus mitis SK321] gi|307617114|gb|EFN96292.1| putative transcriptional regulator [Streptococcus mitis SK321] Length = 149 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 32/59 (54%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R++ R +SQ++L E +G+ ++ +Q +E G +++ + + +++ + + + Sbjct: 2 NRLKELRQEKKLSQKELAENIGVHYRTLQNWENGESQIKPEKAKQLADYFGVSVGYLLN 60 >gi|237734947|ref|ZP_04565428.1| predicted protein [Mollicutes bacterium D7] gi|229381723|gb|EEO31814.1| predicted protein [Coprobacillus sp. D7] Length = 264 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 14/111 (12%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G RI R LG +Q++LG + ++ + V K+E+G+ S L +SE L+ I Sbjct: 3 NKEIGIRILSARKNLGYTQKQLGNLINVSDKAVSKWERGIGCPDISLLLPLSEALKMSID 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + S +Q + +I ++ +++II++ Sbjct: 63 ELIGGTVVDK--------------SEKKTVQNLINYTKIKAIENKERIIKI 99 >gi|191636942|ref|YP_001986108.1| Helix-turn-helix motif [Lactobacillus casei BL23] gi|190711244|emb|CAQ65250.1| Helix-turn-helix motif [Lactobacillus casei BL23] gi|327380969|gb|AEA52445.1| hypothetical protein LC2W_0109 [Lactobacillus casei LC2W] gi|327384145|gb|AEA55619.1| hypothetical protein LCBD_0119 [Lactobacillus casei BD-II] Length = 373 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 11/115 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++INVG I R G++Q+ L + +G++ V K+E G + + L ++ + I Sbjct: 1 MEINVGAVISAHRKQKGITQQALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + S + + F V + I L+R Sbjct: 61 DKLMAYDAQLSSTEI-----------RRIYTSMKQAFETQPGDAVLKSIRNLIRR 104 >gi|187776409|ref|ZP_02802465.2| putative repressor protein [Escherichia coli O157:H7 str. EC4196] gi|188025234|ref|ZP_02776939.2| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|189010761|ref|ZP_02809209.2| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|189402468|ref|ZP_02782667.2| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|189403410|ref|ZP_02795288.2| putative repressor protein [Escherichia coli O157:H7 str. EC4486] gi|189404368|ref|ZP_02788860.2| putative repressor protein [Escherichia coli O157:H7 str. EC4501] gi|189406229|ref|ZP_02827125.2| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|208810492|ref|ZP_03252368.1| putative repressor protein [Escherichia coli O157:H7 str. EC4206] gi|208816709|ref|ZP_03257829.1| putative repressor protein [Escherichia coli O157:H7 str. EC4045] gi|208819596|ref|ZP_03259916.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] gi|209400359|ref|YP_002271137.1| putative repressor protein [Escherichia coli O157:H7 str. EC4115] gi|217329536|ref|ZP_03445615.1| putative repressor protein [Escherichia coli O157:H7 str. TW14588] gi|187767281|gb|EDU31125.1| putative repressor protein [Escherichia coli O157:H7 str. EC4196] gi|188014100|gb|EDU52222.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|188998604|gb|EDU67590.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|189355391|gb|EDU73810.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|189360762|gb|EDU79181.1| putative repressor protein [Escherichia coli O157:H7 str. EC4486] gi|189366046|gb|EDU84462.1| putative repressor protein [Escherichia coli O157:H7 str. EC4501] gi|189375816|gb|EDU94232.1| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|208725008|gb|EDZ74715.1| putative repressor protein [Escherichia coli O157:H7 str. EC4206] gi|208731052|gb|EDZ79741.1| putative repressor protein [Escherichia coli O157:H7 str. EC4045] gi|208739719|gb|EDZ87401.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] gi|209161759|gb|ACI39192.1| putative repressor protein [Escherichia coli O157:H7 str. EC4115] gi|217317304|gb|EEC25733.1| putative repressor protein [Escherichia coli O157:H7 str. TW14588] Length = 219 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 39/88 (44%), Gaps = 5/88 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K + + +G R++ R G++Q +LG+ G+T + +EK +N G+ L Sbjct: 1 MQEKMMES-----LGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSK 55 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEEN 89 +++ L + S+ + + Sbjct: 56 LAQALGTTESYLLYGVSSPELSFVQSTS 83 >gi|196048466|ref|ZP_03115641.1| prophage LambdaBa04, DNA-binding protein [Bacillus cereus 03BB108] gi|196020723|gb|EDX59455.1| prophage LambdaBa04, DNA-binding protein [Bacillus cereus 03BB108] Length = 114 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 8/107 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS---- 71 G+ ++ R ++Q +L E L ++ Q++ +E G + L I+ + Sbjct: 5 GQTLKQLRKSRDLTQAELAEALNLSQSQIKNWETGRFQPDIETLASIASFFNVSLDVLVG 64 Query: 72 ---FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ-IDDVK 114 F D + +D FI+ I D + Sbjct: 65 FSNNFMDEPIQQVISEARSTYGALDDAQKERFCNQVLLFIRMIKDNQ 111 >gi|167755197|ref|ZP_02427324.1| hypothetical protein CLORAM_00702 [Clostridium ramosum DSM 1402] gi|167705247|gb|EDS19826.1| hypothetical protein CLORAM_00702 [Clostridium ramosum DSM 1402] Length = 264 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 14/111 (12%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G RI R LG +Q++LG + ++ + V K+E+G+ S L +SE L+ I Sbjct: 3 NKEIGIRILSARKNLGYTQKQLGNLINVSDKAVSKWERGIGCPDISLLLPLSEALKMSID 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + S +Q + +I ++ +++II++ Sbjct: 63 ELIGGTVVDK--------------SEKKTVQNLINYTKIKAIENKERIIKI 99 >gi|153816351|ref|ZP_01969019.1| hypothetical protein RUMTOR_02603 [Ruminococcus torques ATCC 27756] gi|317501012|ref|ZP_07959220.1| hypothetical protein HMPREF1026_01163 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089033|ref|ZP_08337939.1| hypothetical protein HMPREF1025_01522 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846312|gb|EDK23230.1| hypothetical protein RUMTOR_02603 [Ruminococcus torques ATCC 27756] gi|316897590|gb|EFV19653.1| hypothetical protein HMPREF1026_01163 [Lachnospiraceae bacterium 8_1_57FAA] gi|330406233|gb|EGG85752.1| hypothetical protein HMPREF1025_01522 [Lachnospiraceae bacterium 3_1_46FAA] Length = 255 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 35/82 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I R MSQE+ + +T Q + +EK N L IS+ P+ Sbjct: 1 MKIGETILKLREEKKMSQEEFAQYYHVTRQTISNWEKEKNYPDLQTLVKISDESGVPLDS 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + ++ +I + ++ F Sbjct: 61 MLKDNFSMVQEIDKKVRHLKIF 82 >gi|254975493|ref|ZP_05271965.1| putative phage repressor [Clostridium difficile QCD-66c26] gi|255092881|ref|ZP_05322359.1| putative phage repressor [Clostridium difficile CIP 107932] gi|255314622|ref|ZP_05356205.1| putative phage repressor [Clostridium difficile QCD-76w55] gi|255517296|ref|ZP_05384972.1| putative phage repressor [Clostridium difficile QCD-97b34] gi|255650403|ref|ZP_05397305.1| putative phage repressor [Clostridium difficile QCD-37x79] gi|260683516|ref|YP_003214801.1| putative phage repressor [Clostridium difficile CD196] gi|260687176|ref|YP_003218310.1| putative phage repressor [Clostridium difficile R20291] gi|306520382|ref|ZP_07406729.1| putative phage repressor [Clostridium difficile QCD-32g58] gi|260209679|emb|CBA63401.1| putative phage repressor [Clostridium difficile CD196] gi|260213193|emb|CBE04666.1| putative phage repressor [Clostridium difficile R20291] Length = 169 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + I+ R G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 1 MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 74 FDV 76 Sbjct: 61 LGE 63 >gi|81428204|ref|YP_395204.1| prophage lsa1 XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609846|emb|CAI54893.1| Putative prophage lsa1 DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 259 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 IR R+ +SQ +L E L I+ Q + YEKG+ + +++ + PI + V Sbjct: 3 NNIRKLRLEQNVSQAELAEVLKISRQAISNYEKGLREPKLETWKKLADYFDVPIGYLQGV 62 Query: 77 SPTVCSDISSE 87 +D+ Sbjct: 63 DGVNINDLIKS 73 >gi|54026486|ref|YP_120728.1| hypothetical protein nfa45130 [Nocardia farcinica IFM 10152] gi|54017994|dbj|BAD59364.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 201 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 2/106 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R + +L GI+ + + E G R L ++ + Sbjct: 7 AVGPRLRALRKQRETTLGELSAATGISVSTLSRLESGARRPTLELLLPLARAHGVTLDEL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVRQ 117 D PT + P + + + I R+ Sbjct: 67 VDAPPTGDPRVHLRPVTRNGMTMLPLTRRPGGIQAYKLIIPPDTRR 112 >gi|50084796|ref|YP_046306.1| putative transcription regulator protein [Acinetobacter sp. ADP1] gi|49530772|emb|CAG68484.1| putative transcription regulator protein [Acinetobacter sp. ADP1] Length = 190 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 11/100 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ ++ ++ +RI+ R+ G + ++L ++ + E+ A L+ Sbjct: 1 MMD-------INQHLSQRIKQLRLERGYTLDELANRSHVSRAMISMIERATTNPTAVVLE 53 Query: 61 HISEVLESPISFFFD----VSPTVCSDISSEENNVMDFIS 96 ++ L+ + F+ T SE+ D S Sbjct: 54 KLAVALDITLVSLFNIQTSDLKTQPYTRYSEQPVWTDPES 93 >gi|330808460|ref|YP_004352922.1| XRE family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376568|gb|AEA67918.1| Putative transcription factor, Xre family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 104 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 31/71 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R + G++Q +LGE G + + ++E G L ++ VL+ + FF Sbjct: 6 LGPAIRRYRKVAGLTQAELGEKTGFDPKTISRFETGTYTPSVEALFLLANVLDVQLKAFF 65 Query: 75 DVSPTVCSDIS 85 + Sbjct: 66 ADMGDEDEQRA 76 >gi|326204709|ref|ZP_08194564.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] gi|325985080|gb|EGD45921.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] Length = 179 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 35/65 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R+ G++QE+L ++ + + E+ + + L I E L + I Sbjct: 1 MNIGEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLTSPSIATLIDILESLGTNIKD 60 Query: 73 FFDVS 77 FF+ S Sbjct: 61 FFNES 65 >gi|317498279|ref|ZP_07956578.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894488|gb|EFV16671.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 159 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 41/122 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KRI+ R L ++QEK G +G+ V ++E G N S L I + Sbjct: 3 KRIKKLRRELDLTQEKFGARIGVKGNTVAQWESGRNEPPDSSLAFICREFGVMDEWLRFG 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + + + E + + + K+R+ +I+ Sbjct: 63 TGPMYAPEPTTELDALAKKFNLKHKDYVFIEKLCKNKKLRELLIDFSLEFAQDLLSSNAS 122 Query: 137 EE 138 E Sbjct: 123 PE 124 >gi|314937188|ref|ZP_07844534.1| putative transcriptional regulator [Staphylococcus hominis subsp. hominis C80] gi|313654699|gb|EFS18445.1| putative transcriptional regulator [Staphylococcus hominis subsp. hominis C80] Length = 178 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 30/60 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R+ ++Q ++ + L +T Q V ++E+G +Q +S++ + + Sbjct: 1 MISNKLKSARLAKELTQSEVAKKLYVTRQTVSRWEQGKTLPNIYVIQELSDLYDISLDEL 60 >gi|306838646|ref|ZP_07471482.1| XRE family transcriptional regulator [Brucella sp. NF 2653] gi|306406289|gb|EFM62532.1| XRE family transcriptional regulator [Brucella sp. NF 2653] Length = 182 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + + + Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGM 60 Query: 71 SFFFDVSPTVC 81 + FF + P Sbjct: 61 AEFFALEPDAP 71 >gi|260425999|ref|ZP_05779978.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260420491|gb|EEX13742.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 436 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 44/128 (34%), Gaps = 4/128 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR ILGM Q +L I+ + E R+G L I+E+L S Sbjct: 4 DTLTGSRIRERRNILGMKQAELARRASISASYLNLIEHNRRRIGGKLLLDIAEILGVEPS 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGL--QLNRYFIQIDD--VKVRQKIIELVRSIV 127 + + E D + F + R +I L RS+ Sbjct: 64 VLTEGAEATLIASLREAALRADEAGAELDRLDEFAGRFPGWARLLAESRARIDTLERSVE 123 Query: 128 SSEKKYRT 135 + + Sbjct: 124 ALTDRLAH 131 >gi|258423246|ref|ZP_05686138.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257846575|gb|EEV70597.1| conserved hypothetical protein [Staphylococcus aureus A9635] Length = 189 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L I E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMICELFNVTLDD 60 Query: 73 FFDVSPTVCSDI 84 + DI Sbjct: 61 LVKGTIPFVPDI 72 >gi|182434296|ref|YP_001822015.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326774809|ref|ZP_08234074.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|178462812|dbj|BAG17332.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326655142|gb|EGE39988.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 199 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G++ L GI+ + + E G R + I+ E P+ Sbjct: 18 VGPRLRRLRKDRGVTLAALSAATGISVSTLSRLESGGRRPSLELMLPIARAHEVPLDDLV 77 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDV 113 +P + ++ P + + + I + Sbjct: 78 GAAPVGDPRVRAKPIVQHGRTMLPLTARPGGLQAYKLIQEP 118 >gi|120435032|ref|YP_860718.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] gi|117577182|emb|CAL65651.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] Length = 136 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 9/144 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + PN ++G++I R + GM QE L E LGI+ Q V K E+ +V +L Sbjct: 1 MEKAVKPN----HIGRKIGRIRELRGMKQETLAEELGISQQAVSKIEQSE-KVEDDKLNQ 55 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKII 120 I++VL S +I D L F I+ V+V ++ Sbjct: 56 IAKVLGVTKEGIESFSDEAIFNIIGNTVTNHD---NSSLLCFQPNFNPIEKLVEVYEENK 112 Query: 121 ELVRSIVSSEKKYRTIEEECMVEQ 144 +L ++ +E++ T E+ M E+ Sbjct: 113 KLYERLLKAEQEKITYLEKLMKEK 136 >gi|329298588|ref|ZP_08255924.1| LexA repressor [Plautia stali symbiont] Length = 211 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 36/82 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L ++Q+ L +G++ V ++EK L ++E+L+ ++ D Sbjct: 8 GERIRQRRKALKLTQQALANGIGVSHVAVSQWEKEETVPRGKHLLRLAELLQCSAAWIID 67 Query: 76 VSPTVCSDISSEENNVMDFIST 97 + + + T Sbjct: 68 GDGQPFASTHASPALTAVPLVT 89 >gi|319936268|ref|ZP_08010686.1| hypothetical protein HMPREF9488_01518 [Coprobacillus sp. 29_1] gi|319808644|gb|EFW05188.1| hypothetical protein HMPREF9488_01518 [Coprobacillus sp. 29_1] Length = 212 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 40/104 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++ R +Q+ L + LGI+ + + ++E + L I+++ I + Sbjct: 8 KKLISLRKKYNFTQQDLADKLGISNKTISRWETSESYPDIDLLPKIADIFHVSIDYLLKE 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + + +I + G+ F ++ + II Sbjct: 68 HDDFKELDKFDIISYIPWIISLVGVLTYYIFTKLSIPSLFSFII 111 >gi|257440049|ref|ZP_05615804.1| SOS-response transcriptional repressor [Faecalibacterium prausnitzii A2-165] gi|257197401|gb|EEU95685.1| SOS-response transcriptional repressor [Faecalibacterium prausnitzii A2-165] Length = 209 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R MSQ +L LG+T Q V K+E G + + + ++E+L++ + + Sbjct: 7 LRQCRKQKHMSQAELASLLGVTQQAVGKWESGKSSPDPTTVAKLAEILDTTADYLLGLFD 66 Query: 79 TVCSDISSE 87 + E Sbjct: 67 PTAEGQTEE 75 >gi|255975390|ref|ZP_05425976.1| prophage Lp1 protein 8 [Enterococcus faecalis T2] gi|255968262|gb|EET98884.1| prophage Lp1 protein 8 [Enterococcus faecalis T2] Length = 125 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 3/106 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R ++Q+++ + LGIT YE G + LQ ++ + F + Sbjct: 5 KIKELRNEKKLTQQEVADYLGITRPAYTAYESGKRQPDFETLQKLATLFNVTTDFLLGRN 64 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 T E + + + G+ Y ++ + R++I +L+ Sbjct: 65 YTPEWANKEEVMELDKILKSNPGMT---YGSEVMTDEDREQINDLI 107 >gi|330719168|ref|ZP_08313768.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 134 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 33/86 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K + R G+SQE+L L +T Q + K+E G ++Q I+E +P+ Sbjct: 7 KNLLSLRKEAGISQEELASKLFVTRQTISKWELGEVTPDLGKIQLIAEYFNTPVEELLFG 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 + +++ F Sbjct: 67 QEINKNTSKTKDKVNQLFEEDDTDKD 92 >gi|294813464|ref|ZP_06772107.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus ATCC 27064] gi|294326063|gb|EFG07706.1| Transcriptional regulator, XRE family [Streptomyces clavuligerus ATCC 27064] Length = 457 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 7/117 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R G+SQE+L E G++ VQK E+G V L I+ L S Sbjct: 41 EIGDNIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHTIARGLGVTTSAL 100 Query: 74 FDVSPTVC----SDISSEENNVMDFISTPDGLQ--LNRYFIQIDD-VKVRQKIIELV 123 F P + + P G+ L ++ D +R++++ + Sbjct: 101 FVAGPPEPVVGDDATKQSLVAIRAALMPPIGIDGVLVASVPKVGDLSALRRRVLAIH 157 >gi|229489782|ref|ZP_04383639.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] gi|229323292|gb|EEN89056.1| transcriptional regulator, XRE family [Rhodococcus erythropolis SK121] Length = 211 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 1/104 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K+ PV +G R++ R ++ + L E G+T + K E+ + L Sbjct: 1 MAKAKEAVEPVGPRIGARLKAARQSKRLTLDDLAEACGVTKGYLSKLERDHVNASVATLI 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + VLE P+ F+ + + + ++ + F L Sbjct: 61 KVCAVLEIPVGSLFE-NASAGEVVRADAMPQISFGGEKMTEYLL 103 >gi|255655872|ref|ZP_05401281.1| putative phage repressor [Clostridium difficile QCD-23m63] Length = 169 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + I+ R G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 1 MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 74 FDV 76 Sbjct: 61 LGE 63 >gi|212634305|ref|YP_002310830.1| helix-turn-helix domain-containing protein [Shewanella piezotolerans WP3] gi|212555789|gb|ACJ28243.1| Helix-turn-helix motif protein [Shewanella piezotolerans WP3] Length = 328 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE L E + ++ Q V K+E + +R+ ++E+ E F Sbjct: 1 MILADKIIRLRKQCGWSQEDLAEKMNVSRQSVSKWESANSIPDLNRIITLAEIFEVSTDF 60 Query: 73 FFDVSPTVCSDISS 86 V + S Sbjct: 61 LLKDETEVSETLES 74 >gi|146319128|ref|YP_001198840.1| hypothetical protein SSU05_1474 [Streptococcus suis 05ZYH33] gi|146321334|ref|YP_001201045.1| hypothetical protein SSU98_1487 [Streptococcus suis 98HAH33] gi|145689934|gb|ABP90440.1| hypothetical protein SSU05_1474 [Streptococcus suis 05ZYH33] gi|145692140|gb|ABP92645.1| hypothetical protein SSU98_1487 [Streptococcus suis 98HAH33] gi|292558766|gb|ADE31767.1| hypothetical protein SSGZ1_1311 [Streptococcus suis GZ1] Length = 178 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I+ R G++QE+ L +T Q V +E N L +S V + Sbjct: 24 GQQIKDLRKKKGLTQEQFALKLNVTRQAVSNWENDKNLPDLELLILMSSVFSISLDQLIL 83 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + + + T L + Sbjct: 84 GGTDMNNMTEKLVKDGREGRRTQMHLTIT 112 >gi|289579505|ref|YP_003478132.1| XRE family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289529218|gb|ADD03570.1| transcriptional regulator, XRE family [Thermoanaerobacter italicus Ab9] Length = 319 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I++G +I+ R+ +SQ +L + + E G +L +I+E LE P+ Sbjct: 1 MNISIGTKIKSLRLQKKLSQSELCGNFM-NRVVLSRIENGKALPSLEQLIYIAEKLEVPV 59 Query: 71 SFFFDVSPTVCSDISSEE 88 +FF ++E Sbjct: 60 GYFFSDLKDTSCIYNAES 77 >gi|268592295|ref|ZP_06126516.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291312076|gb|EFE52529.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 94 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 2/89 (2%) Query: 7 IPNP--VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +PN + +G +I R + GM+ E L +G++ QQ +YE+G+NR+ RL H S+ Sbjct: 1 MPNYYLISKIIGNKITYYRKMKGMTLENLSNIVGVSEQQQSRYERGINRINIDRLYHYSK 60 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMD 93 + E I FF + ++I E ++ Sbjct: 61 IFEIDIMAFFIFNSREINEIEHAEEKYLN 89 >gi|167761228|ref|ZP_02433355.1| hypothetical protein CLOSCI_03633 [Clostridium scindens ATCC 35704] gi|167660894|gb|EDS05024.1| hypothetical protein CLOSCI_03633 [Clostridium scindens ATCC 35704] Length = 234 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 31/82 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R M+QE+L E + ++ Q + K+E G ++ + E+ + Sbjct: 6 ENLQFYRKKADMTQEELAERMEVSRQTISKWESGATYPEMEKILQLCEMFRCDMDTLIRG 65 Query: 77 SPTVCSDISSEENNVMDFISTP 98 T + + + + Sbjct: 66 DATESFAEDNAQYDQHKNEFSK 87 >gi|327398256|ref|YP_004339125.1| Cupin 2 barrel domain-containing protein [Hippea maritima DSM 10411] gi|327180885|gb|AEA33066.1| Cupin 2 conserved barrel domain protein [Hippea maritima DSM 10411] Length = 180 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 43/105 (40%), Gaps = 1/105 (0%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R G++ + L E +G T + + E G S LQ I++ L+ + Sbjct: 5 EKIKSYRKKQGLTLKALAEKVGCTDAYISQIETGKAVPSISVLQKIAQSLDVQVRDLLSD 64 Query: 77 SPTVCSD-ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + ++ EE + + + +L I ++ K++ Sbjct: 65 EQSNDKIFLTKEERTQIIYPGSHVYAELLVAKISNKAMEPLYKVV 109 >gi|325263717|ref|ZP_08130450.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324030755|gb|EGB92037.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 120 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 9/113 (7%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R ++Q +L + L +T + YE + RL I+ + + S Sbjct: 12 LKRLREQNHITQRELADYLKVTRSTIAGYETKGKQPDYERLLRIAAYFGVSVDYLLTGSN 71 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + ISS G ++ ++Q+ + RQK+ E + + E+ Sbjct: 72 SGTITISSASPE--------RGREILISYLQL-SPESRQKLEEYLHLLKLKER 115 >gi|320528113|ref|ZP_08029278.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320131461|gb|EFW24026.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 176 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK ++ R G++QE+L E +G+T + V ++E G N L +S+ + Sbjct: 6 IGKLLQTLRKEKGITQEQLAEQVGVTRRTVSRWETGSNMPDLDVLIELSDFYAVDLRKIL 65 Query: 75 DVS--PTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 ++ E + S + +L + I Sbjct: 66 SGERNDEYMNEEVKETVLCVAAYSNEEKRRLLQRIHWI 103 >gi|307946613|ref|ZP_07661948.1| helix-turn-helix domain-containing protein [Roseibium sp. TrichSKD4] gi|307770277|gb|EFO29503.1| helix-turn-helix domain-containing protein [Roseibium sp. TrichSKD4] Length = 130 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 2/117 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V + +P D +G+RI R G+S +L LG+ +Q +E + +++L Sbjct: 9 VSDTTMPETTDYTLGERICRARDAAGLSTAQLARRLGVKSSTLQGWESDRSEPRSNKLVL 68 Query: 62 ISEVLESPISFFF--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ VL ++ S + D+ + + +I+ +K+R Sbjct: 69 LAGVLNVSPTWLLVGRGSSPMEEDVVLTDIENVRLSLDKVHKHALALTEEIERLKLR 125 >gi|296163497|ref|ZP_06846243.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295886255|gb|EFG66127.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 124 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 12/130 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + +G+ + R+ M+QE++ E LG+ + + ++E+G RL Sbjct: 1 MRASATQEEAFAKRIGQALARARLDADMTQEQVSEALGVNTETISRFERGHTAPPLFRLF 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++EV P D + + L D VR+ + Sbjct: 61 ELAEVYGVPPETLIAGGEGRSLDPARDVTA------------LMGNLSHGDREFVREWVA 108 Query: 121 ELVRSIVSSE 130 + + ++ Sbjct: 109 AMCERLAKAK 118 >gi|257789927|ref|YP_003180533.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257473824|gb|ACV54144.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 197 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 28/76 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R G+SQ+ L + ++ Q V +E L +S + + + Sbjct: 1 MELGSQIKRHRTDRGLSQDDLAAKIYVSRQTVSSWENDKTYPDVESLLLLSVLFDVTVDE 60 Query: 73 FFDVSPTVCSDISSEE 88 + + Sbjct: 61 LIKGDVEAMKKAIAND 76 >gi|254510250|ref|ZP_05122317.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221533961|gb|EEE36949.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 155 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 11/124 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R GM+Q +L LG+ + +E ++ A++L ++ +L I + Sbjct: 41 GDRVAGAREAAGMTQTQLARRLGVKKATIVAWEDDLSEPRANKLSMMAGMLNVSIMWLLT 100 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + ++ L+ R ++ + + EK R Sbjct: 101 GEGDGTVATALAGDTDVELNQLVGELRAIRGEMRANS-----------ERLARVEKALRL 149 Query: 136 IEEE 139 E Sbjct: 150 KLER 153 >gi|210615069|ref|ZP_03290438.1| hypothetical protein CLONEX_02652 [Clostridium nexile DSM 1787] gi|210150452|gb|EEA81461.1| hypothetical protein CLONEX_02652 [Clostridium nexile DSM 1787] Length = 179 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 38/90 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R+ ++QE+L ++ + + E+ + + L I + L + ++ Sbjct: 1 MNIGNKIKELRIEKNLTQEELANRAELSKGFISQLERNLTSPSIATLIDILQCLGTNLTE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 FF ++ V + ++ Sbjct: 61 FFAEESDEQIVFRKDDFFVKKDTGLRNTIE 90 >gi|154497045|ref|ZP_02035741.1| hypothetical protein BACCAP_01338 [Bacteroides capillosus ATCC 29799] gi|150273444|gb|EDN00572.1| hypothetical protein BACCAP_01338 [Bacteroides capillosus ATCC 29799] Length = 94 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+ R GM+QE+L E L ++ Q V E G I+ + E+ I F Sbjct: 29 NRLEELRKARGMTQEELAEALEVSRQTVGSLENGRYNPSILLAFKIARLFETTIEEVF 86 >gi|217975318|ref|YP_002360069.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|217500453|gb|ACK48646.1| transcriptional regulator, XRE family [Shewanella baltica OS223] Length = 104 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R G++Q LG +GI ++ YE G + + LQ I++ L P+++ Sbjct: 9 KRLKEARTKAGITQADLGAKIGIHQNSASSRMNHYELGRHTPDINTLQRIADELGVPLNY 68 Query: 73 FFDVSPTVCS 82 FF Sbjct: 69 FFCEDDASAK 78 >gi|116334877|ref|YP_796403.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116100224|gb|ABJ65372.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 254 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FFDVS 77 I+ R ++QE L + L +T Q V +E G N L +S++ + F+ Sbjct: 7 IKTLRRQSNLTQEALAQQLHVTRQTVSTWETGKNMPNLETLHALSQLFNISLEKLLFNEE 66 Query: 78 PTVCSDISSEENNVMDF 94 T+ D +D Sbjct: 67 ITMKKDKDPSLATQIDH 83 >gi|194467259|ref|ZP_03073246.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454295|gb|EDX43192.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 203 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ +R LG +Q ++ E L +T Q + +E+G + L IS++ + I Sbjct: 7 IKKQRNNLGFTQAEIAEKLHVTRQTISNWEQGKSYPDLDTLVKISDIYKISIDTLLKGDK 66 Query: 79 T 79 Sbjct: 67 N 67 >gi|289168842|ref|YP_003447111.1| transcriptional regulator [Streptococcus mitis B6] gi|288908409|emb|CBJ23251.1| transcriptional regulator [Streptococcus mitis B6] Length = 141 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 38/85 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +SQ++L E +G+ ++ +Q +E G +++ + Q +++ + + Sbjct: 2 NRLKELRQEKKLSQKELAENIGVHYRTLQNWENGESQIKPEKAQQLADFFGVSVGYLLGY 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 + ++ ++ D L Sbjct: 62 EEAKTLENILKDAEEYLEMTEDDLL 86 >gi|225377108|ref|ZP_03754329.1| hypothetical protein ROSEINA2194_02753 [Roseburia inulinivorans DSM 16841] gi|225211013|gb|EEG93367.1| hypothetical protein ROSEINA2194_02753 [Roseburia inulinivorans DSM 16841] Length = 178 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G IR R G++QE++ + LG+T V K+E G L I+ +L + Sbjct: 4 MQIGSVIRKYRKECGLTQEEMAKRLGVTTPAVNKWENGNTNPDIELLAPIARLLHISLDT 63 Query: 73 FFDVSP 78 Sbjct: 64 LLSFQE 69 >gi|227505368|ref|ZP_03935417.1| transcriptional regulatory protein [Corynebacterium striatum ATCC 6940] gi|227198070|gb|EEI78118.1| transcriptional regulatory protein [Corynebacterium striatum ATCC 6940] Length = 452 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 3/97 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R G++Q + + L ++ + + E + + L +S+ ++F Sbjct: 22 GARIHALRKQQGLTQVAMAKQLQLSTSYLNQLENDQRPLTVTVLMQLSQRFGVDPTYF-- 79 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 S +E + + L F ++ Sbjct: 80 -SADKDVRTITELRRLFPDAAEATLSDLVTRFPELMP 115 >gi|239624744|ref|ZP_04667775.1| DNA-binding protein [Clostridiales bacterium 1_7_47_FAA] gi|239521130|gb|EEQ60996.1| DNA-binding protein [Clostridiales bacterium 1_7_47FAA] Length = 183 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 6/108 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DIN+GK+++ R GMS +L + G+T + + E+ + L+ I++ L+ P+ Sbjct: 3 DINLGKKVQDFRNKSGMSLRELAKRSGLTASMLSQIERDLVNPSIGTLKAIAQALDVPMF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 FF I N G + VR I Sbjct: 63 KFFKDDEPQVQMIVRRGENKT------IGHPDADLAYTLLTPDVRGSI 104 >gi|167769359|ref|ZP_02441412.1| hypothetical protein ANACOL_00685 [Anaerotruncus colihominis DSM 17241] gi|167668327|gb|EDS12457.1| hypothetical protein ANACOL_00685 [Anaerotruncus colihominis DSM 17241] Length = 205 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G+SQ L + LG++ Q V K+E + G + L I++VL + Sbjct: 10 ERLKALRKECGISQRALAQRLGVSQQAVAKWEAASSTPGPNALATIADVLGVSSDYLLGR 69 Query: 77 SPTVCSDISS 86 Sbjct: 70 ERDFQDGAQD 79 >gi|167580827|ref|ZP_02373701.1| DNA-binding protein [Burkholderia thailandensis TXDOH] Length = 278 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 1/105 (0%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DVNPLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVS 61 Query: 70 ISFFFDVS-PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 ++ F+ ++E+ D S L+ Sbjct: 62 LASLFEDDRAASPLSRAAEQPVWKDPASGYVRRSLSPAAPSPLQP 106 >gi|154504675|ref|ZP_02041413.1| hypothetical protein RUMGNA_02181 [Ruminococcus gnavus ATCC 29149] gi|153795157|gb|EDN77577.1| hypothetical protein RUMGNA_02181 [Ruminococcus gnavus ATCC 29149] Length = 130 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 46/123 (37%), Gaps = 10/123 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R +G++Q++L + LG+ + YE G + + + Sbjct: 3 ERIKELRKTIGITQQELADKLGLKRNTIATYEIGKAIPSDRVISDLCNKYSVNEEWLRSG 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + S E + ++ + + + IIE+++ ++K + + Sbjct: 63 NGEMFKQPSDEVGHY---------VEDLLEYDGVGNP-FYDIIIEMMKKYQEMDEKSKLV 112 Query: 137 EEE 139 E Sbjct: 113 IRE 115 >gi|46206109|ref|ZP_00210190.1| COG1396: Predicted transcriptional regulators [Magnetospirillum magnetotacticum MS-1] Length = 191 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 4/110 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V +RIR R+ G + + L ++ + + E G R+ +L I+ L + Sbjct: 6 DLDAVVRQRIRGLRLARGWTLDALAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTT 65 Query: 70 ISFFFDVSPTVCSDISSEEN----NVMDFISTPDGLQLNRYFIQIDDVKV 115 + + I E +S + + V Sbjct: 66 LDQLVEPVDDEDVVIRPEPQRRPGETTWLLSRERTGTMVAKMRLTPERAV 115 >gi|296395188|ref|YP_003660072.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296182335|gb|ADG99241.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 204 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 19/124 (15%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGIT-----FQQVQKYEKGVNRVGASRLQHISEVL 66 D +G RI+ R G+ Q L + + Q V K E G + I+ +L Sbjct: 18 DRMIGSRIKELREARGLPQSALADAVNTRGERFTQQIVGKIENGQRSLKYQEAILIAHIL 77 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+ F+ + + + + + LNR + D + + EL+ +I Sbjct: 78 RVPVGVFWMTGESATDEYAELDVKFDN---------LNRVASRAD-----RALWELLEAI 123 Query: 127 VSSE 130 E Sbjct: 124 AEVE 127 >gi|296139160|ref|YP_003646403.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027294|gb|ADG78064.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 83 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Query: 1 MVGNKKIP-NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K P N G+R+R RR LG+SQE +G+ + + + E+G + Sbjct: 1 MSPAPKPPANESLATFGRRVRARREELGLSQEAAAIQIGVHWTYLGQVERGQRSARVENI 60 Query: 60 QHISEVLESPISFFFDVSP 78 ++ L + D P Sbjct: 61 LKLAHGLNTTPGALLDGVP 79 >gi|268591032|ref|ZP_06125253.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291313838|gb|EFE54291.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 88 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 3 GNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 NKK N V N+GK+I+L R +S L +GI+ QQ+ +YE G++ + S++ Sbjct: 13 ENKKNITNIVAKNIGKKIKLLRSEYRLSGSDLARIIGISQQQLSRYENGLSDISTSKIML 72 Query: 62 ISEVLESPISFFF 74 IS + + +FF Sbjct: 73 ISVYFKVDVCYFF 85 >gi|154252262|ref|YP_001413086.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156212|gb|ABS63429.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 72 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R+ G++QE+ E G + Q + E+G L ++ L Sbjct: 7 VGGNVRRIRLKKGLTQEQFAEISGFSQQYISGLEQGRRNPTVVTLYELATALGVSHLDLL 66 >gi|114766076|ref|ZP_01445085.1| transcriptional regulator, putative [Pelagibaca bermudensis HTCC2601] gi|114541631|gb|EAU44672.1| transcriptional regulator, putative [Roseovarius sp. HTCC2601] Length = 436 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 4/128 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR+ILGM Q +L + I+ + E R+G L ++E+L S Sbjct: 4 DTLTGSRIRERRIILGMKQAELARRVDISASYLNLIEHNRRRIGGKLLLDLAEILGVEPS 63 Query: 72 FFFDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIV 127 + + E + F + R +I L RS+ Sbjct: 64 VLTEGAEATLIGALREAALREAEAGAELDRLDEFAGRFPGWARLLAESRARIDTLERSVE 123 Query: 128 SSEKKYRT 135 + + Sbjct: 124 ALTDRLAH 131 >gi|29833680|ref|NP_828314.1| regulatory protein [Streptomyces avermitilis MA-4680] gi|29610804|dbj|BAC74849.1| putative regulatory protein [Streptomyces avermitilis MA-4680] Length = 206 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 39/111 (35%), Gaps = 2/111 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R+R R G + L E GI+ + + E G+ + L I+ + Sbjct: 20 DAVLAEVGPRLRRIRKERGATLAGLSEATGISVSTLSRLESGLRKPSLELLLPIARAHQV 79 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVRQ 117 P+ P + ++ P Q + F ++ + + Sbjct: 80 PLDELVGAPPVSDPRVRAKPIVRHGRTHWPLTRQPGGLQAFKVLEPQRKLE 130 >gi|17988717|ref|NP_541350.1| MerR family transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|23500652|ref|NP_700092.1| transcriptional regulator [Brucella suis 1330] gi|148558695|ref|YP_001257846.1| putative transcriptional regulator [Brucella ovis ATCC 25840] gi|225629381|ref|ZP_03787414.1| MerR family transcriptional regulator [Brucella ceti str. Cudo] gi|225686684|ref|YP_002734656.1| hypothetical protein BMEA_B0907 [Brucella melitensis ATCC 23457] gi|254695939|ref|ZP_05157767.1| hypothetical protein Babob3T_15192 [Brucella abortus bv. 3 str. Tulya] gi|254700125|ref|ZP_05161953.1| hypothetical protein Bsuib55_04584 [Brucella suis bv. 5 str. 513] gi|254710842|ref|ZP_05172653.1| hypothetical protein BpinB_11376 [Brucella pinnipedialis B2/94] gi|254720212|ref|ZP_05182023.1| hypothetical protein Bru83_11898 [Brucella sp. 83/13] gi|256029224|ref|ZP_05442838.1| hypothetical protein BpinM2_00940 [Brucella pinnipedialis M292/94/1] gi|256043791|ref|ZP_05446713.1| hypothetical protein Bmelb1R_04819 [Brucella melitensis bv. 1 str. Rev.1] gi|256058912|ref|ZP_05449126.1| hypothetical protein Bneo5_00926 [Brucella neotomae 5K33] gi|256157420|ref|ZP_05455338.1| hypothetical protein BcetM4_00971 [Brucella ceti M490/95/1] gi|256253602|ref|ZP_05459138.1| hypothetical protein BcetB_04769 [Brucella ceti B1/94] gi|256262183|ref|ZP_05464715.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260167682|ref|ZP_05754493.1| hypothetical protein BruF5_04739 [Brucella sp. F5/99] gi|260564976|ref|ZP_05835461.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|261216367|ref|ZP_05930648.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261220739|ref|ZP_05935020.1| transcriptional regulator [Brucella ceti B1/94] gi|261318414|ref|ZP_05957611.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261322848|ref|ZP_05962045.1| transcriptional regulator [Brucella neotomae 5K33] gi|261750617|ref|ZP_05994326.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261757118|ref|ZP_06000827.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|265985222|ref|ZP_06097957.1| transcriptional regulator [Brucella sp. 83/13] gi|265986212|ref|ZP_06098769.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265990218|ref|ZP_06102775.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265995908|ref|ZP_06108465.1| transcriptional regulator [Brucella ceti M490/95/1] gi|306841347|ref|ZP_07474056.1| XRE family transcriptional regulator [Brucella sp. BO2] gi|17984528|gb|AAL53614.1| transcriptional regulator, merr family [Brucella melitensis bv. 1 str. 16M] gi|23464297|gb|AAN34097.1| transcriptional regulator, putative [Brucella suis 1330] gi|148369980|gb|ABQ62852.1| putative transcriptional regulator [Brucella ovis ATCC 25840] gi|225615877|gb|EEH12926.1| MerR family transcriptional regulator [Brucella ceti str. Cudo] gi|225642789|gb|ACO02702.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|260152619|gb|EEW87712.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260917974|gb|EEX84835.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260919323|gb|EEX85976.1| transcriptional regulator [Brucella ceti B1/94] gi|261297637|gb|EEY01134.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261298828|gb|EEY02325.1| transcriptional regulator [Brucella neotomae 5K33] gi|261737102|gb|EEY25098.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|261740370|gb|EEY28296.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262550205|gb|EEZ06366.1| transcriptional regulator [Brucella ceti M490/95/1] gi|263000887|gb|EEZ13577.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263091879|gb|EEZ16201.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|264658409|gb|EEZ28670.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264663814|gb|EEZ34075.1| transcriptional regulator [Brucella sp. 83/13] gi|306288650|gb|EFM59986.1| XRE family transcriptional regulator [Brucella sp. BO2] gi|326411076|gb|ADZ68140.1| MerR family transcriptional regulator [Brucella melitensis M28] gi|326554367|gb|ADZ89006.1| MerR family transcriptional regulator [Brucella melitensis M5-90] Length = 182 Score = 49.4 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + + + Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGM 60 Query: 71 SFFFDVSPTVC 81 + FF + P Sbjct: 61 AEFFALEPDAP 71 >gi|322412342|gb|EFY03250.1| Phage transcriptional repressor [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 230 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ RM SQ +L L I K+E G + L ++ +L+ P ++F Sbjct: 4 GSRLKECRMEKHYSQSELANLLKINRASYNKWETGKSVPNQKNLSALARILDVPTTYF 61 >gi|262278864|ref|ZP_06056649.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] gi|262259215|gb|EEY77948.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202] Length = 197 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 30/65 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++I + +++R R+ G + + L ++ + E+G A L+ ++ L P Sbjct: 3 DINIRIAQQVRELRLARGYTLDVLATRCQVSRSAISLIERGEASPTAVVLEKLANGLGVP 62 Query: 70 ISFFF 74 ++ F Sbjct: 63 LTQLF 67 >gi|210611542|ref|ZP_03288946.1| hypothetical protein CLONEX_01136 [Clostridium nexile DSM 1787] gi|210151943|gb|EEA82950.1| hypothetical protein CLONEX_01136 [Clostridium nexile DSM 1787] Length = 194 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 1/93 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ R +SQE+L + ++ Q + +E + L +S + + Sbjct: 1 MDIGLQIKKFREQQKISQEELALKIFVSRQTISNWETNKSCPDVKSLITLSNIFNVSLDN 60 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + + + + IS ++L Sbjct: 61 FIKEDIKEMREIVEKATIKKFNVISVVFLIELI 93 >gi|183601014|ref|ZP_02962507.1| hypothetical protein PROSTU_04634 [Providencia stuartii ATCC 25827] gi|188019351|gb|EDU57391.1| hypothetical protein PROSTU_04634 [Providencia stuartii ATCC 25827] Length = 91 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 2/82 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N++ + VG+RI+ R+ G S E LG+ GI+ QQ+ ++E+GVNR+ L Sbjct: 1 MENERYKYSLS--VGQRIKSLRLQNGWSGEALGKITGISQQQISRFERGVNRIDVESLAK 58 Query: 62 ISEVLESPISFFFDVSPTVCSD 83 + I D Sbjct: 59 FANAFNVDIVVLLSDYDKTIYD 80 >gi|182416964|ref|ZP_02625290.2| putative phage repressor [Clostridium butyricum 5521] gi|237666135|ref|ZP_04526122.1| putative phage repressor [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379140|gb|EDT76642.1| putative phage repressor [Clostridium butyricum 5521] gi|237658225|gb|EEP55778.1| putative phage repressor [Clostridium butyricum E4 str. BoNT E BL5262] Length = 198 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 13/124 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRL 59 M NKK+ + RI+ RR L +S E L + G +Q+YE G + R Sbjct: 1 MNDNKKM-----REIVARIKKRREELNLSYEDLSKRTGFGSSTLQRYETGAINRIPIDRF 55 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + +++ LE + D + L+ F+++ + R+KI Sbjct: 56 EELAKGLEIEPYKLMGWDEDYLLSQDRKNETDGDIV------DLHNAFLKL-NETGRKKI 108 Query: 120 IELV 123 +E + Sbjct: 109 LEYI 112 >gi|154502909|ref|ZP_02039969.1| hypothetical protein RUMGNA_00729 [Ruminococcus gnavus ATCC 29149] gi|153796448|gb|EDN78868.1| hypothetical protein RUMGNA_00729 [Ruminococcus gnavus ATCC 29149] Length = 118 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 43/99 (43%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G+++R R ++Q++L + ++ +Q+ K EKG L+ +++VL Sbjct: 1 MPIDDLTALGQKMREARKKKDLTQQELADLSHVSIKQIAKIEKGKINPSYLILKALAKVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + + + + +++ + + L R Sbjct: 61 PISLDTLINPDVSPEDEGATQMKMLYCSCPSEMRETLLR 99 >gi|217971957|ref|YP_002356708.1| putative phage repressor [Shewanella baltica OS223] gi|217497092|gb|ACK45285.1| putative phage repressor [Shewanella baltica OS223] Length = 233 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 38/97 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R + RR I+ ++Q +L + +G++ + ++E G L +++ L+ + Sbjct: 4 LGERSKERRKIINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDWLM 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 S F + L ++I Sbjct: 64 FGDSKNTKKPESNAEWAGGFDLWDNDSPLGEDEVEIP 100 >gi|91794616|ref|YP_564267.1| transciptional regulator [Shewanella denitrificans OS217] gi|91716618|gb|ABE56544.1| transciptional regulator [Shewanella denitrificans OS217] Length = 229 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 34/71 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ RR LG++Q + + +G+T + +E G L +++ L F Sbjct: 4 ERIKQRRKELGLTQPSIAKTIGLTKATISLWESGSTSPKGENLHALAKALRCAPEFLLFG 63 Query: 77 SPTVCSDISSE 87 + ++ + ++E Sbjct: 64 NDSIKPEPNAE 74 >gi|56696154|ref|YP_166510.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56677891|gb|AAV94557.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 130 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 40/111 (36%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P G R+ R GM+Q +L LG+ + +E ++ A+RL Sbjct: 1 MSDETDWYGPEAATFGDRLAAAREASGMTQAQLARRLGVKKATINGWEDDLSEPRANRLS 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 ++ +L I + ++ + D + L+ R +Q Sbjct: 61 MLAGLLNVSIVWLITGEGQGGEALNETDETARDMAALLTELRSLRADLQAS 111 >gi|146291531|ref|YP_001181955.1| XRE family transcriptional regulator [Shewanella putrefaciens CN-32] gi|145563221|gb|ABP74156.1| transcriptional regulator, XRE family [Shewanella putrefaciens CN-32] Length = 188 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 5/134 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K + G++ + + E+G + + L I+ + Sbjct: 4 INSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S F + +P + + + + +T L + + R +++ + Sbjct: 64 STFLEPTPQSQGAVFRKPDELRQQPATDGML-----VASLFPFEERFGFEMFELTLLPNY 118 Query: 131 KKYRTIEEECMVEQ 144 ++ E + E Sbjct: 119 ERLSEPHETGVTEH 132 >gi|126175811|ref|YP_001051960.1| putative phage repressor [Shewanella baltica OS155] gi|125999016|gb|ABN63091.1| putative phage repressor [Shewanella baltica OS155] Length = 233 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 38/97 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R + RR I+ ++Q +L + +G++ + ++E G L +++ L+ + Sbjct: 4 LGERSKERRKIINLTQLQLSKKVGVSSVTISQWESGDTSPKGENLYKLAQALQCSPDWLM 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 S F + L ++I Sbjct: 64 FGDSKNTKKPESNAEWAGGFDLWDNDSPLGEDEVEIP 100 >gi|306821038|ref|ZP_07454657.1| transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550979|gb|EFM38951.1| transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 164 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 34/87 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ IR R G SQEK G+ V E+G + L I+ LE +S F Sbjct: 6 VGQEIRKLRTSKGYSQEKFATVCGLDRTYVAAVERGKRNISIENLYKIANALEITLSELF 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 D + I + + + + L Sbjct: 66 DFGNPIQKTILLDIKGERFILESKEEL 92 >gi|196041265|ref|ZP_03108560.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196027973|gb|EDX66585.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 149 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSLGEQLKKLRESKGFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENN 90 + + I E + Sbjct: 61 LIKGNQNIKEKIHINEED 78 >gi|153940476|ref|YP_001390199.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936372|gb|ABS41870.1| DNA-binding protein [Clostridium botulinum F str. Langeland] Length = 373 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 57/139 (41%), Gaps = 13/139 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I +R G++QE+L +G++ V K+E G++ L ++ + Sbjct: 6 IGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLSYPDILFLPELATYFNISVDELL 65 Query: 75 DVSPTVCSD--------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL---V 123 SP + + +S E + +L + + + II+L Sbjct: 66 GYSPQLTKEDIKKIYSKLSHEFAVKPFDEAMEQCNKLIKKYYSCFPFLL--SIIQLLLNY 123 Query: 124 RSIVSSEKKYRTIEEECMV 142 +++ ++ + I ++C++ Sbjct: 124 SNLIKNDAIKKEIFQQCIL 142 >gi|88799578|ref|ZP_01115154.1| transcriptional regulator, Cro/CI family protein [Reinekea sp. MED297] gi|88777663|gb|EAR08862.1| transcriptional regulator, Cro/CI family protein [Reinekea sp. MED297] Length = 181 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 2/97 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVGKR++ R G+SQ +L + +G+T + EK S LQ + + + Sbjct: 1 MNVGKRLQEVRKKAGISQRELAKRVGVTNSTISMIEKNNVSPSVSSLQKVLSGMSMTLLE 60 Query: 73 FFDVSPTV--CSDISSEENNVMDFISTPDGLQLNRYF 107 FF+ I+ +++ D S+ +L + Sbjct: 61 FFEAEDNDIYVPQINYTDDDFQDVSSSQVRRRLLGQY 97 >gi|298243569|ref|ZP_06967376.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297556623|gb|EFH90487.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 460 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 2/98 (2%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V VG IR R L M+Q +L + + E+G R L ++ L+ P Sbjct: 12 AVAARVGTNIREVRTKLNMTQAQL-AAPEFSISYISAIERGKIRPSLKALSILARRLDVP 70 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFIST-PDGLQLNRY 106 ++F + SP ++ + + D + L + Sbjct: 71 LTFLLEGSPAGAAEARAVGYSPADTGPDQRVDVDLVQA 108 >gi|255974995|ref|ZP_05425581.1| cro/CI family transcriptional regulator [Enterococcus faecalis T2] gi|256963766|ref|ZP_05567937.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis HIP11704] gi|257421770|ref|ZP_05598760.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|307271713|ref|ZP_07552984.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307285503|ref|ZP_07565642.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|255967867|gb|EET98489.1| cro/CI family transcriptional regulator [Enterococcus faecalis T2] gi|256954262|gb|EEU70894.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis HIP11704] gi|257163594|gb|EEU93554.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|306502727|gb|EFM71992.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306511591|gb|EFM80590.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|315155529|gb|EFT99545.1| helix-turn-helix protein [Enterococcus faecalis TX0043] Length = 180 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 36/77 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ 60 Query: 73 FFDVSPTVCSDISSEEN 89 FF P + +EE Sbjct: 61 FFSQQPLEQKIVYNEEE 77 >gi|254828889|ref|ZP_05233576.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|255028672|ref|ZP_05300623.1| transcription regulator, putative [Listeria monocytogenes LO28] gi|258601302|gb|EEW14627.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] Length = 157 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD I E + Sbjct: 61 FFDEEEHNQKVIYGELEH 78 >gi|291287070|ref|YP_003503886.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884230|gb|ADD67930.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 196 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 32/65 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R G++ + + G + + + E + + L I++VL +++ Sbjct: 6 VKIGERVRKIRNERGLTLQDVANFTGFSKALISQIENNIVMPPINTLSKIAKVLNVKMTY 65 Query: 73 FFDVS 77 FF+ Sbjct: 66 FFEEE 70 >gi|220928331|ref|YP_002505240.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219998659|gb|ACL75260.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 179 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 34/65 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R+ G++QE+L ++ + + E+ + + L I E L + I Sbjct: 1 MKIGEKIKQLRVKNGLTQEELAGRCELSKGFISQLERDLTSPSIATLMDILESLGTNIKD 60 Query: 73 FFDVS 77 FF+ S Sbjct: 61 FFNES 65 >gi|83855136|ref|ZP_00948666.1| DNA binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83842979|gb|EAP82146.1| DNA binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 188 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 50/123 (40%), Gaps = 5/123 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N P+ + + R++ R G+S + + + G++ V + E+G + + L Sbjct: 1 MTDN---PDAILTQLPARLKAARTAQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLW 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +++ L+ + D +PT V + G ++ + + + ++ Sbjct: 58 NLTRALQVDFAGLLDSAPTPAQIEVLRAAEVPTINNLGSGCRI--RILSPPEEAGKHEVY 115 Query: 121 ELV 123 EL+ Sbjct: 116 ELL 118 >gi|194337612|ref|YP_002019406.1| helix-turn-helix domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194310089|gb|ACF44789.1| helix-turn-helix domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 359 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RIR R G++ LG +G+T +QKYEKG+ +S L +++ +F Sbjct: 1 MIEHRIRQARQAAGLTLAALGAKIGVTHTAIQKYEKGIITPSSSILLKLAQACGVRTEYF 60 Query: 74 F 74 F Sbjct: 61 F 61 >gi|291534827|emb|CBL07939.1| Predicted N-acetylglucosamine kinase [Roseburia intestinalis M50/1] Length = 382 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G++Q + E LGI+ Q V K+E G++ L ISE+L+ I Sbjct: 9 ENIKTYRNKRGLNQYEFAEKLGISPQAVSKWECGLSCPSVENLCVISEILDVSIDTLIGE 68 Query: 77 SPTVCS 82 + Sbjct: 69 NSDSEK 74 >gi|227364951|ref|ZP_03848993.1| bacteriophage transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325682427|ref|ZP_08161944.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|227070005|gb|EEI08386.1| bacteriophage transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324978266|gb|EGC15216.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 124 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 47/120 (39%), Gaps = 8/120 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+++G RI R MSQ +L + LGI + YE + L I++ + Sbjct: 13 DMSIGNRIADLRTNNHMSQFQLAKVLGIGTSTLGMYETNKRKPSPKVLNKIADYFDVSTD 72 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + ++ + + I + +G + ++ + +L+ S + +++ Sbjct: 73 YLLGRKSKADQVHNATVDEALGTIMSFEGQPVT--------EHDKKVMKDLLESYLRNKE 124 >gi|251798962|ref|YP_003013693.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546588|gb|ACT03607.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 122 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 4/117 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G RI R +QE+ LGI+ + YEK L +++ + I + Sbjct: 1 MNIGNRIAGLREERKWTQEQTASKLGISRAALSHYEKNRREPDTETLAKFADLYQVTIDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY----FIQIDDVKVRQKIIELVRS 125 + + +S + N +D + D L +Y + + ++ I VR+ Sbjct: 61 LVGRTTNTQAALSEDVRNFVDHLELSDEELLEKYNLSVDGRKLTAEETKRFIAFVRA 117 >gi|153955445|ref|YP_001396210.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146348303|gb|EDK34839.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] Length = 184 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 46/113 (40%), Gaps = 1/113 (0%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G ++ R ++ E L + ++ + + E+G+ + L I++ L+ P Sbjct: 3 DIKSIIGINLKNIRKKRQLTLEMLSKLTNVSISMLGEIERGITNPTITVLWKIADGLKIP 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + S + + + + + L F I +++ KI+E+ Sbjct: 63 FTDLINEEKPPISVVYNSDAKTI-INESGFKLFSLFNFDPIKKIELYYKILEV 114 >gi|126726502|ref|ZP_01742343.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126704365|gb|EBA03457.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 207 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 2/73 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G P+D +G R+R R + E+ G+ + K E G L+ + Sbjct: 17 GETANAEPLD--LGARVRQLRKDRQWTLEQAANHAGLARSTLSKIENGQMSPTYDALKKL 74 Query: 63 SEVLESPISFFFD 75 + L+ + F Sbjct: 75 ALGLDISVPQLFT 87 >gi|119854987|ref|YP_935592.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|145226009|ref|YP_001136663.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|119697705|gb|ABL94777.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|145218472|gb|ABP47875.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] Length = 92 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R+ G+SQE L G+ Q+ + E G V R+ I+E L ++ Sbjct: 23 VGSRIRALRLERGLSQESLALESGVARNQLIQMEHGRRGVLIERVYDIAEALGVSVNEIV 82 Query: 75 DVSPTVCSD 83 P + Sbjct: 83 VDDPAATAQ 91 >gi|152966423|ref|YP_001362207.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151360940|gb|ABS03943.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 109 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 32/81 (39%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NK + ++ R+ + R G+++ +L E +G+ Q + E+G ++ Sbjct: 2 NKAKESAGAKHLHNRLAVLRAERGITRRQLAEAVGVNVQTIGFLERGDYGPSVELALRLA 61 Query: 64 EVLESPISFFFDVSPTVCSDI 84 P+ F ++P Sbjct: 62 GHFGLPVEALFSLTPFPPMSA 82 >gi|324989664|gb|EGC21608.1| XRE family transcriptional regulator [Streptococcus sanguinis SK353] Length = 168 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 31/81 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + D Sbjct: 61 LLLEDSDKPEIKPVLSEDEKD 81 >gi|324323883|gb|ADY24926.1| putative transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 125 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 39/100 (39%), Gaps = 3/100 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D GK +R R G++ ++LG+ LG++ + +E G ++ I+E + Sbjct: 3 DNIFGKNLRNLRTQKGLTLKELGQELGVSGNTISGWELGNKEPNMDMIKVIAEFFTVSVD 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + + ++ ++ ++ + I Sbjct: 63 YLLQ---HEVLESEDHKEAIVQQLARELADEIYKRSDNIP 99 >gi|300310419|ref|YP_003774511.1| Cro/CI family transcription regulator [Herbaspirillum seropedicae SmR1] gi|300073204|gb|ADJ62603.1| Cro/CI family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 152 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 7/76 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +KK VG+RI+ R+ +G SQ K LG + + E+G G+ L Sbjct: 17 MNASKKA-------VGQRIKRARLAIGFSQRKFATVLGTLPNHICQIEQGRCMPGSRLLH 69 Query: 61 HISEVLESPISFFFDV 76 + I++ Sbjct: 70 GMHVQFNIDINWLLTG 85 >gi|291544659|emb|CBL17768.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Ruminococcus sp. 18P13] Length = 208 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPIS 71 +N+G+RI+ R + +Q++L + +G T Q V KYE G+ + + +++ I++ L + Sbjct: 1 MNIGERIKTARKEIDKTQQELADAIGTTKQNVYKYENGIITNIPSDKIEAIAKFLHVSPA 60 Query: 72 FFFDVSPTVCSDISSE 87 + F D Sbjct: 61 YLFGWEEESLYDQFDN 76 >gi|291541388|emb|CBL14498.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 280 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I R+ R + +SQE+L +G++ Q V K+E+ L ++++ + Sbjct: 1 MNIETANRLLQYRKKMNLSQEELAAKIGVSRQAVSKWERAEASPDTDNLILLADIYGVSL 60 Query: 71 SFFFDVSP 78 Sbjct: 61 DELLKGEK 68 >gi|121535735|ref|ZP_01667538.1| transcriptional regulator, XRE family [Thermosinus carboxydivorans Nor1] gi|121305700|gb|EAX46639.1| transcriptional regulator, XRE family [Thermosinus carboxydivorans Nor1] Length = 110 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 49/117 (41%), Gaps = 14/117 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +IR R + G+SQEKL + +G+ + +E G N + ++ I+ + Sbjct: 4 IADKIRQARHLAGLSQEKLADVVGVKRVTLAAWETGRNEPNSEHIRKIALACGVTTDWLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + P + ++++ + + I+ + + I L+ ++ + +K Sbjct: 64 E-MPEDFTGMANDARAIAEKIAR-------------LKPEDKLMIERLLTALSADDK 106 >gi|117621486|ref|YP_857504.1| DNA-binding transcriptional repressor PuuR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562893|gb|ABK39841.1| transcriptional regulator, Cro/CI family [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 203 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 6/127 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N V ++G+R+ R LG+SQ ++ E G+T + E+ + LQ Sbjct: 13 MTDNPMTDKGVAQSMGERLAATRRRLGLSQRRVAELSGLTHGAICMIEQDKVSPSVASLQ 72 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + V E P+S FF + + +++ S ++L + R+++ Sbjct: 73 KLLSVYELPLSRFFAEEEGGTPSVVIKAEQLIELGSQGVSMKLVH------NGNNRRQLG 126 Query: 121 ELVRSIV 127 ++ + Sbjct: 127 FMLETYA 133 >gi|26990795|ref|NP_746220.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24985799|gb|AAN69684.1|AE016604_6 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 129 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 6/112 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R LGM+Q G+ G+ KYE G L ++ + Sbjct: 4 IGMRLREERERLGMTQRVFGDIGGVEPNAQGKYESGERTPRLDYLAALAT-RGVDALYVL 62 Query: 75 DVSPTVCSDISSEENNV-----MDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 T + + + + D L ++ + ++I+ Sbjct: 63 SGLRTPAAHEGLNTDESGLLGAFRKLRSDDQAALLHLLGRLANDAKPRQIVR 114 >gi|50123388|ref|YP_052555.1| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043] gi|49613914|emb|CAG77367.1| putative DNA-binding protein [Pectobacterium atrosepticum SCRI1043] Length = 185 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 5/138 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G ++ R G S + E G++ + + E+ + + L I+ + Sbjct: 1 MSDELTSRIGNTLKTLRQGKGWSLTRAAEETGVSKAMLGQIERSESSPTVATLWKIATGM 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 S F + + D++ F G+ + F D K+R LV + Sbjct: 61 NVAFSTFIEPTLAD-EDVTYRSGTGSAFRENEAGMYVVPLFP--FDEKLR--FDMLVIEL 115 Query: 127 VSSEKKYRTIEEECMVEQ 144 + + E ++E Sbjct: 116 AAGASSPSSPHETGVIEH 133 >gi|320006892|gb|ADW01742.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 202 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 33/90 (36%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R+R R G++ L E GI+ + + E G R L I+ E Sbjct: 15 DAVLTGVGPRLRRLRKDRGVTLAALSEATGISVSTLSRLESGGRRPSLELLLPIARAHEV 74 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTP 98 P+ P + ++ S P Sbjct: 75 PLDDLVGAPPVSDPRVRAKPIVHGSRTSLP 104 >gi|160946034|ref|ZP_02093260.1| hypothetical protein FAEPRAM212_03567 [Faecalibacterium prausnitzii M21/2] gi|158443765|gb|EDP20770.1| hypothetical protein FAEPRAM212_03567 [Faecalibacterium prausnitzii M21/2] Length = 95 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 35/88 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI R +SQEKL E LG++ + + E+G + L I+E + + Sbjct: 7 AIGNRIFTLRTNAKLSQEKLAEKLGVSHRHLGDLERGSSNGSVKILIDIAEYFHVSMDYL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 +E +D + GL Sbjct: 67 LLGRDPSRDQFQNELQAAIDHLEKIKGL 94 >gi|118472418|ref|YP_885545.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|118173705|gb|ABK74601.1| DNA-binding protein [Mycobacterium smegmatis str. MC2 155] Length = 201 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 41/91 (45%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 NK + + + ++G RIR+ R ++ E+L E G++ + + E+G + L + Sbjct: 8 DNKALVDAMLGDLGSRIRMLRKERQLTTERLAETAGVSAGLISQIERGNGNPSFATLVQL 67 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMD 93 + L+ PI + + + E +D Sbjct: 68 AHGLQMPIGQLLEAPESKSVVVRKNERRRLD 98 >gi|52143637|ref|YP_083193.1| MerR family transcriptional regulator [Bacillus cereus E33L] gi|196039098|ref|ZP_03106405.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|51977106|gb|AAU18656.1| transcriptional regulator, MerR family [Bacillus cereus E33L] gi|196030243|gb|EDX68843.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 181 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPNF 98 >gi|99081998|ref|YP_614152.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038278|gb|ABF64890.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 239 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 24/71 (33%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + +G+R++ R GM+ E+ E + + K E G L ++ + Sbjct: 51 IRLELGRRVKGLRSAAGMTLEQAAERTRLAVSTIYKIENGKVSPSFENLLRLARGYGVGL 110 Query: 71 SFFFDVSPTVC 81 Sbjct: 111 EKLIAEPEDEV 121 >gi|298242982|ref|ZP_06966789.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297556036|gb|EFH89900.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 899 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 41/114 (35%), Gaps = 3/114 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G R+R R+ +SQE L E L ++ + ++++E+G AS +S + Sbjct: 1 MRFGNRLRQERLRRHLSQEALAEALALSARSIRRWEQGQALPQASVRLQLSRFFGLRLED 60 Query: 73 FFDVSPTVCSDIS---SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F T F D L + ID V ++ L Sbjct: 61 LFGDQETQAPPTPLWYVPYPRNPFFTGRDDILASLHTSLSIDQEAVYTQVYALH 114 >gi|296533524|ref|ZP_06896097.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] gi|296266156|gb|EFH12208.1| DNA-binding protein [Roseomonas cervicalis ATCC 49957] Length = 208 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 40/72 (55%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+ +RL R LG+S ++LG G++ + + E+G+ L+ +S L+ PIS Sbjct: 25 DRRLGECVRLLRQRLGLSIQELGRRTGLSIGMISQLERGLATPSVRTLRLLSLALQVPIS 84 Query: 72 FFFDVSPTVCSD 83 FFF+ P S Sbjct: 85 FFFEERPEGASP 96 >gi|326203738|ref|ZP_08193601.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325986178|gb|EGD47011.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 169 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE+L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQEELAIKLNVVRQTISKWEQGLSVPDSDILISISEVLETPVSTLLGE 63 >gi|256850687|ref|ZP_05556112.1| rad protein [Lactobacillus crispatus MV-1A-US] gi|256712555|gb|EEU27551.1| rad protein [Lactobacillus crispatus MV-1A-US] Length = 112 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 46/99 (46%), Gaps = 1/99 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ +RI+ R+ +Q+ L E + + V +E G N L+ ++ L+ + Sbjct: 1 MNLAERIKNARINKHYTQKDLAELINVKSTTVSGWELGRNEPSIDTLKKLATKLDVSFDY 60 Query: 73 FFDVSPTVCSDISS-EENNVMDFISTPDGLQLNRYFIQI 110 VS S+IS + + ++D + DG + + +I Sbjct: 61 LAGVSSHSDSNISDTDLDALLDNAHSYDGKPMTDHDRKI 99 >gi|228995259|ref|ZP_04154973.1| hypothetical protein bpmyx0001_58780 [Bacillus pseudomycoides DSM 12442] gi|228764497|gb|EEM13332.1| hypothetical protein bpmyx0001_58780 [Bacillus pseudomycoides DSM 12442] Length = 142 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +++ R SQE + +G+T Q V K+E + L +SE+ E I Sbjct: 1 MNLGSQLKKFRESKNFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTIDE 60 Query: 73 FFDVSPTVCSDI 84 S V ++ Sbjct: 61 LIKGSEDVRGEL 72 >gi|229017114|ref|ZP_04174030.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] gi|229023292|ref|ZP_04179801.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228737997|gb|EEL88484.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228744173|gb|EEL94259.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] Length = 181 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + T D+ + I +L Sbjct: 63 SFL-LEETNTDDLIVRSHKRKKMIIDNLSYELL 94 >gi|308233625|ref|ZP_07664362.1| DNA-binding protein [Atopobium vaginae DSM 15829] gi|328944523|ref|ZP_08241984.1| helix-turn-helix domain protein [Atopobium vaginae DSM 15829] gi|327490924|gb|EGF22702.1| helix-turn-helix domain protein [Atopobium vaginae DSM 15829] Length = 328 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 17/115 (14%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE+L + LG++ Q V K+E + R+ +S + Sbjct: 1 MILADKILELRKQNGWSQEELADKLGVSRQSVSKWEGAQSIPDMERIIALSRLFGVSTDL 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 V + + N ++ VR ++I+L + Sbjct: 61 LVKDEIDVMGNNVDADENACQ-----------------EEAGVRMRVIKLEEATA 98 >gi|210613950|ref|ZP_03289987.1| hypothetical protein CLONEX_02200 [Clostridium nexile DSM 1787] gi|210150910|gb|EEA81918.1| hypothetical protein CLONEX_02200 [Clostridium nexile DSM 1787] Length = 108 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 1/82 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G IR R LG++QE++ E L + E+ S I++ L + Sbjct: 4 IDSRLGDMIRSYREKLGLTQEEMAERLQVNLTHYGNIERAACNPSFSLFLRIAKELNLSV 63 Query: 71 S-FFFDVSPTVCSDISSEENNV 91 + + ++I+ + Sbjct: 64 DAYLYSTRDDTAAEITRLLSKC 85 >gi|167920201|ref|ZP_02507292.1| putative DNA-binding protein [Burkholderia pseudomallei BCC215] Length = 195 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 35/91 (38%), Gaps = 4/91 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R+R R + G S + L E ++ + E + A L+ ++ L Sbjct: 2 DINQRIARRVRALRDLRGYSLDALAERSKVSRSNISLIEHAQSNPTAVVLERLANALGVS 61 Query: 70 ISFFFDVS----PTVCSDISSEENNVMDFIS 96 ++ F+ ++E+ D S Sbjct: 62 LASLFEDDRAARAASPLSRATEQPVWKDPAS 92 >gi|307129602|ref|YP_003881618.1| MunI regulatory protein [Dickeya dadantii 3937] gi|306527131|gb|ADM97061.1| MunI regulatory protein [Dickeya dadantii 3937] Length = 89 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K + G+R++ R+ G+SQE + G+ + E+GV + Sbjct: 14 MLIGMKNTKDITARFGQRVKTLRLQAGLSQEAFADKCGLDRTYISGIERGVRNPTLEVIG 73 Query: 61 HISEVLESPISFFFD 75 I++ LE + FD Sbjct: 74 VIADGLEIQLQSLFD 88 >gi|283783001|ref|YP_003373755.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|298253582|ref|ZP_06977372.1| transcriptional regulator [Gardnerella vaginalis 5-1] gi|283441430|gb|ADB13896.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|297532349|gb|EFH71237.1| transcriptional regulator [Gardnerella vaginalis 5-1] Length = 328 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 17/113 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE+L + LG++ Q V K+E + R+ +S + Sbjct: 1 MILADKILELRKQNGWSQEELADKLGVSRQAVSKWEGAQSIPDMERIIALSRLFGVSTDL 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 V + N ++ VR ++IEL + Sbjct: 61 LVKDEIDVMGKNVNAGENACQ-----------------EEAGVRMRVIELEEA 96 >gi|229172472|ref|ZP_04300031.1| Transcriptional regulator, MerR [Bacillus cereus MM3] gi|228610943|gb|EEK68206.1| Transcriptional regulator, MerR [Bacillus cereus MM3] Length = 181 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L GIT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELATMAGITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + T D+ + I +L Sbjct: 63 SFL-LEDTNTDDLIVRSHKRKKMIIDNLSYELL 94 >gi|227552248|ref|ZP_03982297.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257895169|ref|ZP_05674822.1| helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|293377799|ref|ZP_06623987.1| DNA-binding protein [Enterococcus faecium PC4.1] gi|227178619|gb|EEI59591.1| transcriptional regulator [Enterococcus faecium TX1330] gi|257831734|gb|EEV58155.1| helix-turn-helix domain-containing protein [Enterococcus faecium Com12] gi|292643580|gb|EFF61702.1| DNA-binding protein [Enterococcus faecium PC4.1] Length = 222 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 2/98 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 Query: 73 --FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + ++ + E S+ L L + Sbjct: 61 PSIESATESIEPTLPDEPLVNKKSYSSKPPLSLKKALS 98 >gi|114324653|gb|ABI63635.1| unknown [Streptococcus salivarius] Length = 264 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 8/144 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K N + R+ R G ++++ +G T Q V K+E G N L Sbjct: 1 MKECKDSNNLMGKMFTDRLIKLRQARGWTKKEFSAKIGKTQQTVGKWENGSNAPTFKDLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + + +S + N+ +L D + + Sbjct: 61 KLVGLFGVTSDYLLGLSDSPSKYAYPPINDNKQEQVEEMFKEL--------DEGNQDATV 112 Query: 121 ELVRSIVSSEKKYRTIEEECMVEQ 144 + + + + ++ + I+E + +Q Sbjct: 113 DFIENRLDNQHISKEIKENDLKKQ 136 >gi|228950524|ref|ZP_04112674.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809160|gb|EEM55631.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 114 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 8/107 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R ++Q +L E L ++ Q++ +E G + L I+ + Sbjct: 5 GQTLKQLRKSRDLTQAELAEALNLSQSQIKNWETGRFQPDIETLASIASFFNVSLDVLVG 64 Query: 76 VS----PTVCSDISSEENNVMDFIST----PDGLQLNRYFIQIDDVK 114 S + SE + + Q+ + I D + Sbjct: 65 FSNNFIDEPIQQVISEARSTYGALDDAQKERFCNQVLLFIRMIKDNQ 111 >gi|210608500|ref|ZP_03287876.1| hypothetical protein CLONEX_00055 [Clostridium nexile DSM 1787] gi|210152991|gb|EEA83997.1| hypothetical protein CLONEX_00055 [Clostridium nexile DSM 1787] Length = 119 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 5/111 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R ++Q +L E L ++ + YE + +L+ ++ I + Sbjct: 4 GNNLKDLRETRNVTQGQLAEYLQVSRPTIAGYETKSRQPDFEKLEKLANYFHVSIDYLVS 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 S T +DI + + + ++ + +++ + + Sbjct: 64 GSETTSTDIP----LKKEPNEKSLDRDVAMAYQKLSLESKQD-VLKYIELL 109 >gi|161598555|ref|YP_001573769.1| transcriptional regulator [Bacillus thuringiensis serovar israelensis] gi|21685421|emb|CAD30074.1| probable transcriptional regulator [Bacillus thuringiensis serovar israelensis] Length = 124 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 53/124 (42%), Gaps = 8/124 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G + + L + + + K E+G+ + L+ IS + I + ++ Sbjct: 3 NRIKEIRKKNGDTLKDLAKKTNYDYSNLSKIERGIYTPSLNILKKISTIYNIDIQYLIEL 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKIIELVRSIVSSEK 131 +++ +E + +++ +L + + I D + +++++R + + + Sbjct: 63 DEKCEDELNEKEFILDINLNSQ---ELLKKYNLILDGKLATEDEIELVVQIIRKLRETLE 119 Query: 132 KYRT 135 K + Sbjct: 120 KKKN 123 >gi|16799870|ref|NP_470138.1| hypothetical protein lin0796 [Listeria innocua Clip11262] gi|16413247|emb|CAC96028.1| lin0796 [Listeria innocua Clip11262] gi|313619917|gb|EFR91474.1| DNA-binding protein [Listeria innocua FSL S4-378] Length = 180 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 38/78 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MDIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD I E + Sbjct: 61 FFDEEEHNQKVIYGELEH 78 >gi|219667669|ref|YP_002458104.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537929|gb|ACL19668.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 368 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 19/134 (14%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R G++Q++L +G++ V K+E G + + L ++ I SP + Sbjct: 14 RREKGITQDELAAYIGVSKASVSKWETGQSYPDITFLPLLAAYFNISIDELMSYSPQMER 73 Query: 83 DISSE--ENNVMDFISTPD------GLQLNRYFIQIDDVKVRQKIIELVR------SIVS 128 ++ DF S P L + + +++LV+ + Sbjct: 74 SDIAKLYTRLAADFASRPFEDVIAECAALIKKYYSCFP-----LLVQLVKLYTNHFMLAG 128 Query: 129 SEKKYRTIEEECMV 142 ++++ + E + Sbjct: 129 TQERQEALLNETVT 142 >gi|284006697|emb|CBA71956.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 237 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RIR RR L ++Q ++ + LG++ V K+E G + L +++VL I + Sbjct: 21 ISNRIRDRRKELRLTQNEIAKALGVSRVSVTKWENGDTKPDGENLHILTKVLACNIEWLL 80 Query: 75 DVSPTVCSDISS 86 + D + Sbjct: 81 YGKDSRSEDDTK 92 >gi|239981788|ref|ZP_04704312.1| helix-turn-helix domain-containing protein [Streptomyces albus J1074] gi|291453649|ref|ZP_06593039.1| helix-turn-helix domain-containing protein [Streptomyces albus J1074] gi|291356598|gb|EFE83500.1| helix-turn-helix domain-containing protein [Streptomyces albus J1074] Length = 88 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 4/71 (5%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+PV RI + R+ +++ +L + LG+ +Q + E+G I+ E Sbjct: 16 PDPVH----NRIAMLRVERQVTRRQLADALGVHYQTIGYLERGEYSPSLHLALRIAAYFE 71 Query: 68 SPISFFFDVSP 78 P+ F F ++P Sbjct: 72 VPVEFIFSLTP 82 >gi|227500542|ref|ZP_03930593.1| DNA-binding protein [Anaerococcus tetradius ATCC 35098] gi|227217354|gb|EEI82684.1| DNA-binding protein [Anaerococcus tetradius ATCC 35098] Length = 367 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I +R G++QE+L E + +T V K+E G + L ++ + Sbjct: 4 IGEIILQKRKERGITQEELAEFMMVTKASVSKWETGQSHPDILLLPKLATFFNISVDELI 63 Query: 75 DVSPTVCSD 83 P + S Sbjct: 64 GYDPDLSSA 72 >gi|209542873|ref|YP_002275102.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209530550|gb|ACI50487.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 475 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 2/116 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R +SQ+ L LGI+ + E V AS L ++ L+ I Sbjct: 6 IGHIIRRLRSERSLSQQGLATRLGISPSYLNLIEHDQRSVTASLLIKLTRALDVSIEALS 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 V + E + D + + + + + ++ L ++ ++ Sbjct: 66 GVDEQRLRGLLHEALS--DPLLGAHAVPAQEIAVLAAQPEAARAVLTLHQAFRAAH 119 >gi|163845040|ref|YP_001622695.1| hypothetical protein BSUIS_B0917 [Brucella suis ATCC 23445] gi|163675763|gb|ABY39873.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] Length = 182 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + + + Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGM 60 Query: 71 SFFFDVSPTVC 81 + FF + P Sbjct: 61 AEFFALEPDAP 71 >gi|158318022|ref|YP_001510530.1| helix-turn-helix domain-containing protein [Frankia sp. EAN1pec] gi|158113427|gb|ABW15624.1| helix-turn-helix domain protein [Frankia sp. EAN1pec] Length = 366 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 21/137 (15%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR R +LG+SQ L E G+ + K E G L I+ V +P S FFD Sbjct: 14 GERIRAARTLLGLSQGDLAEASGVGQTMISKIESGAKYPSDDLLDTIAAVTGTPRS-FFD 72 Query: 76 VSPTVCSDIS--SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS-------- 125 V P ++ +++ T QL +I + LV+ Sbjct: 73 VVPLDIPPMTLRFRKSSQAKRGDTKRVDQLLAEAYRI--------VWTLVKQHDRYLAPT 124 Query: 126 --IVSSEKKYRTIEEEC 140 + + E+ EE Sbjct: 125 IPLATGEELSGEDIEEL 141 >gi|319936560|ref|ZP_08010974.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1] gi|319808358|gb|EFW04918.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1] Length = 110 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 37/95 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +++ R G+SQ++L E L ++ Q V K+E + + +SE+ + Sbjct: 1 MKLNEKLLQLRKERGLSQQQLAEQLDVSRQSVSKWELNESIPDIQNIVAMSELFHVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + + ++ + L L + Sbjct: 61 LLKDEMEKNQADDNRIDIILVVSTLIIFLGLVLAY 95 >gi|313635253|gb|EFS01552.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria seeligeri FSL N1-067] gi|313639938|gb|EFS04624.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria seeligeri FSL S4-171] Length = 111 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 1/107 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G++QE L E L T Q + +YE G + L ++++ + Sbjct: 3 LNKFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDVLFELAKIFNKRL 62 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 FF + + + +D T + L+ +I++ R Sbjct: 63 DDFFPERNLPPADERGMTIAAHIDDDVTDEELRDILAYIEMKKKLHR 109 >gi|300172339|ref|YP_003771504.1| helix-turn-helix domain-containing protein [Leuconostoc gasicomitatum LMG 18811] gi|299886717|emb|CBL90685.1| helix-turn-helix domain protein [Leuconostoc gasicomitatum LMG 18811] Length = 246 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 31/74 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R ++Q++ + I++Q V +E + I + + P+++ Sbjct: 1 MTIGDQIKHLRTAHHLTQQEFATKIYISYQSVSNWENHRGYPSTEIMLLIIDTFDLPLNY 60 Query: 73 FFDVSPTVCSDISS 86 F +D Sbjct: 61 FIAKDIDATTDHEE 74 >gi|254705610|ref|ZP_05167438.1| hypothetical protein BpinM_00991 [Brucella pinnipedialis M163/99/10] gi|261313020|ref|ZP_05952217.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261302046|gb|EEY05543.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] Length = 182 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + + + Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGM 60 Query: 71 SFFFDVSPTVC 81 + FF + P Sbjct: 61 AEFFALEPDAP 71 >gi|299821483|ref|ZP_07053371.1| DNA-binding protein [Listeria grayi DSM 20601] gi|299817148|gb|EFI84384.1| DNA-binding protein [Listeria grayi DSM 20601] Length = 180 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKKIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIVTLFDILEVLGSSPKA 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD I E + Sbjct: 61 FFDEEEHTQKVIYGEGEH 78 >gi|166032548|ref|ZP_02235377.1| hypothetical protein DORFOR_02263 [Dorea formicigenerans ATCC 27755] gi|166026905|gb|EDR45662.1| hypothetical protein DORFOR_02263 [Dorea formicigenerans ATCC 27755] Length = 150 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 27/66 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + I+ R ++Q++L + L ++ Q V ++E G + ++ L+ + Sbjct: 1 MALNDNIKKFREEKNLTQQQLADKLYVSRQTVCRWENGSRCPDLITAKKLALELDVSMDE 60 Query: 73 FFDVSP 78 Sbjct: 61 LISDED 66 >gi|59713765|ref|YP_206540.1| transcriptional repressor rstR [Vibrio fischeri ES114] gi|59482013|gb|AAW87652.1| transcriptional repressor rstR [Vibrio fischeri ES114] Length = 111 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 3/114 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +RI+ R ++QE + + I KYEKG ++ +++ IS F Sbjct: 1 MIKERIKELRSSRNLTQEDVANAMKIAKSTYIKYEKGTQSPQLETIEVMAKFYGVDISEF 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 FD + +++ + + + + R++ I L + + Sbjct: 61 FDEKKPDLDLQLMSKLELINQLEKDEKESIILMIEGL---IFRRQNINLSKRLA 111 >gi|30019992|ref|NP_831623.1| transcriptional regulator [Bacillus cereus ATCC 14579] gi|31415744|ref|NP_852484.1| Transcriptional regulator [Bacillus phage phBC6A51] gi|29895537|gb|AAP08824.1| Transcriptional regulator [Bacillus cereus ATCC 14579] Length = 112 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 46/107 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R G + +++ + +G YE + A L ++++ ++ F Sbjct: 1 MDIGTQLKFLRNRRGWTMQEVADRIGKNDSTYSGYETNKRKPNAEVLVQLADIFDTTTDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + + ++ + DG+++ +I +V +RQ + Sbjct: 61 ILGRTENPNGLNFNVKDFLDQGRLHSDGVEITDEQAEIANVLLRQLL 107 >gi|16078316|ref|NP_389133.1| Phage PBSX transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221309100|ref|ZP_03590947.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221313427|ref|ZP_03595232.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318350|ref|ZP_03599644.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. JH642] gi|221322623|ref|ZP_03603917.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. SMY] gi|321314993|ref|YP_004207280.1| Phage PBSX transcriptional regulator [Bacillus subtilis BSn5] gi|139821|sp|P23789|XRE_BACSU RecName: Full=HTH-type transcriptional regulator xre; AltName: Full=Putative pbsX repressor gi|143835|gb|AAA22894.1| PBSX repressor [Bacillus subtilis] gi|498812|emb|CAA84042.1| xre [Bacillus subtilis subsp. subtilis str. 168] gi|1225936|emb|CAA94052.1| PBSX repressor [Bacillus subtilis subsp. subtilis str. 168] gi|2633605|emb|CAB13108.1| Phage PBSX transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291483768|dbj|BAI84843.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195] gi|320021267|gb|ADV96253.1| Phage PBSX transcriptional regulator [Bacillus subtilis BSn5] Length = 113 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 46/121 (38%), Gaps = 12/121 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R +QE++ +G++ + YE G + LQ +++ + + Sbjct: 1 MIGGRLKSLRGKR--TQEEIASHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYL 58 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D + + LQL +Q + +Q+ IE + + EK Sbjct: 59 LTGKDKKSD----------DDMFSDPDLQLAYRDMQDFSPESKQQAIEFINYLKEKEKNR 108 Query: 134 R 134 + Sbjct: 109 K 109 >gi|28377773|ref|NP_784665.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|28270606|emb|CAD63512.1| transcription regulator [Lactobacillus plantarum WCFS1] Length = 183 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 11/132 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G +I+ +R SQ+ + E L ++ Q + K+E G + L +S++ Sbjct: 3 IVIGTKIKEQRQQHEWSQQTVAERLHVSRQTISKWELGKSYPDLELLVALSKLFSVSTDE 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK---IIELVRSIVSS 129 +S + + + + R I +LV ++ ++ Sbjct: 63 LLGLSRRPVQ-----RPWWQLLLRKRSRTDMTVKWYSGGQDRARVAVGIISDLVANLNTT 117 Query: 130 EKKYRTIEEECM 141 ++ + + Sbjct: 118 NEQ---PLRQLL 126 >gi|83942534|ref|ZP_00954995.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] gi|83846627|gb|EAP84503.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] Length = 229 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 2/74 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G + PVD +G R+R R + E+ G+ + K E G L+ Sbjct: 38 SGETETAPPVD--LGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQMSPTYEALKK 95 Query: 62 ISEVLESPISFFFD 75 ++ LE + F Sbjct: 96 LAVGLEISVPQLFT 109 >gi|315221870|ref|ZP_07863782.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315189103|gb|EFU22806.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 207 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 3/108 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R ++QE+L +G+T + + +EKG ++ + Q +++ + + Sbjct: 5 NRIKELRQKEKLTQEELANKIGVTKRTIIAWEKGERQIKQDKAQQLADYFGVSVRYLLGY 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 S + + M + G L +V+ K+IE +R Sbjct: 65 EDDYLSSMIKKYEESMKNPADFGGYGLLALTRGT---EVQDKVIEALR 109 >gi|257090410|ref|ZP_05584771.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|256999222|gb|EEU85742.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|315034707|gb|EFT46639.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0027] gi|315578682|gb|EFU90873.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0630] Length = 125 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 3/110 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +++ R+ +Q+++ + LGIT +E N L ++ + + F Sbjct: 1 MLGNKLKQLRISKNKTQQQVADYLGITRAAYSHFENNRNDPDKETLVKLAILFDVTTDFL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + T E + + + G+ Y +I + R++I +L+ Sbjct: 61 LGRNHTPEWASKDEVIELDKILKSNPGMT---YGSEIMTDEDREQINDLI 107 >gi|308535325|ref|YP_002139718.2| helix-turn-helix transcriptional regulator PuuR [Geobacter bemidjiensis Bem] gi|308052670|gb|ACH39922.2| helix-turn-helix transcriptional regulator PuuR, cupin domain-containing protein [Geobacter bemidjiensis Bem] Length = 181 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ RM+ ++QE+L +T + + E + L+ I +V + Sbjct: 1 MKIGERLKRLRMVNSLTQEELASRADLTKGFISQLENDATSPSIATLKDIVDVFGISMQE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF E ++L Sbjct: 61 FFSEETDQDIVFGKEARVQATDDGDSVKVELL 92 >gi|153938184|ref|YP_001392454.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152934080|gb|ABS39578.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295320440|gb|ADG00818.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 93 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R ++QE+LG+ L ++ Q V YE V + L +S++ + + Sbjct: 3 GDRLKELREEKELTQEELGKLLSVSRQTVSGYEAEVIEPNINNLVRLSDIFNVSLDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDFIS 96 + + + N + Sbjct: 63 RTKERYNLNLENKKNKELLLD 83 >gi|71083930|ref|YP_266650.1| transcription regulator [Candidatus Pelagibacter ubique HTCC1062] gi|91763002|ref|ZP_01264966.1| probable transcription regulator [Candidatus Pelagibacter ubique HTCC1002] gi|71063043|gb|AAZ22046.1| probable transcription regulator [Candidatus Pelagibacter ubique HTCC1062] gi|91717415|gb|EAS84066.1| probable transcription regulator [Candidatus Pelagibacter ubique HTCC1002] Length = 477 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 1/132 (0%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +DI +G +I+ R LG+ KL E LGI+ + E G ++ L + E L Sbjct: 2 SQLDIKIGPKIKAFRRQLGLQANKLSEDLGISPSYLNLIESGKRKIDGDLLLKVCEKLNI 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 +S S + SE + F + + + K+ + ++ L + Sbjct: 62 QLSDLTSKSDINLENTISEILDDKLFEDLDILGPEVKDLVG-TNPKIGRALVRLGDILKK 120 Query: 129 SEKKYRTIEEEC 140 + + E+ Sbjct: 121 KDHELIDKIEKI 132 >gi|310659824|ref|YP_003937545.1| hypothetical protein CLOST_2525 [Clostridium sticklandii DSM 519] gi|308826602|emb|CBH22640.1| protein of unknown function [Clostridium sticklandii] Length = 102 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR R I ++Q +L E + + + E+ L+ I+E S+ Sbjct: 1 MTIGERIRQLRRIKDVTQRELAESVNFSHSYIGDLERNRTNPSIKALEIIAEYFNVDTSY 60 Query: 73 FFDVS 77 Sbjct: 61 LIGSE 65 >gi|296156060|ref|ZP_06838899.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295893566|gb|EFG73345.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 190 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 29/89 (32%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +D + +R+R R S + L ++ + + E AS L + Sbjct: 9 NAIDRRIAQRLRALRAERNWSLDDLARLSSVSRATLSRLENAAVSPTASVLGKLCVAYGL 68 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFIST 97 PIS + + + ++ Sbjct: 69 PISRLMHMVEEDFAPHVPRAAQPLWTDAS 97 >gi|237743275|ref|ZP_04573756.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|256028631|ref|ZP_05442465.1| MerR family transcriptional regulator [Fusobacterium sp. D11] gi|289766549|ref|ZP_06525927.1| transcriptional regulator [Fusobacterium sp. D11] gi|229433054|gb|EEO43266.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|289718104|gb|EFD82116.1| transcriptional regulator [Fusobacterium sp. D11] Length = 184 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 39/85 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK++R R GMS +L + ++ + + E+G L+ I+ L+ +++ Sbjct: 1 MTIGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + +I + + + +I + Sbjct: 61 LLEDEDDDIRNIEYIKKDSIKYIES 85 >gi|229073601|ref|ZP_04206721.1| transcriptional regulator [Bacillus cereus F65185] gi|228709534|gb|EEL61588.1| transcriptional regulator [Bacillus cereus F65185] Length = 186 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK+I R MSQE+L + ++ Q + +E N L +S + + Sbjct: 1 MNIGKQIHYFRKRDNMSQEELAAKIHVSRQSISNWENERNYPDIHNLLIMSILFNVSLDD 60 Query: 73 FFDVS 77 Sbjct: 61 LVKGD 65 >gi|167463790|ref|ZP_02328879.1| Transcriptional regulator, xre family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 112 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 37/94 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG RI+ R+ ++Q + + +G E + LQ I++ L+ + Sbjct: 1 MNVGDRIKDLRIKKKLTQSDMAKKIGTGRANYAHMENNRVEIKHEFLQAIAKELDVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 S + SD + + + DG+ L Sbjct: 61 LLGNSNSTVSDAHDLKKFLDQNMILFDGIPLTEE 94 >gi|38257067|ref|NP_940721.1| Orf36 [Pseudomonas syringae pv. syringae] gi|37723844|gb|AAR02170.1| Orf36 [Pseudomonas syringae pv. syringae] Length = 115 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 11/117 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G RI+ R G++Q L E + + +YE+ +L ++E Sbjct: 2 SSIRKIIGSRIKAHRKSRGLTQSALAEAIECEVASIGRYERAETAPDGEQLIKMAE---- 57 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 FF++SP + + + + L R I+D +++I + + Sbjct: 58 ----FFEISPMDLLPVKIDLKLQAVLDLRSELIDLVRT---INDPSQLERLIGVAKE 107 >gi|53748387|emb|CAH58723.1| hypothetical protein [Clostridium sp. RKD] Length = 114 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R ++QE+L +GI+ V K+E G + + L I+ I Sbjct: 6 IGEVIYRLRKEKAITQEQLANFIGISTAAVSKWESGTSYPDITLLPVIATFFNVTIDTLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ 102 + + + + N + + + L Sbjct: 66 NFKIQLSDEEVMDIFNKCEKLFSSGDLD 93 >gi|125974945|ref|YP_001038855.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125715170|gb|ABN53662.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] Length = 142 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 28/69 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R +SQ+ + + +G+ KYE G ++ +Q ++E + + + Sbjct: 7 LRQLRTEKNLSQKDVADAIGVDRTTYTKYETGKSQPDFVTIQKLAEFYSVSVDYLLGRTD 66 Query: 79 TVCSDISSE 87 I E Sbjct: 67 IRNPYIPEE 75 >gi|238855118|ref|ZP_04645444.1| transcriptional regulator, XRE family [Lactobacillus jensenii 269-3] gi|260664951|ref|ZP_05865802.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|282934260|ref|ZP_06339535.1| transcriptional repressor [Lactobacillus jensenii 208-1] gi|313472501|ref|ZP_07812991.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|238832258|gb|EEQ24569.1| transcriptional regulator, XRE family [Lactobacillus jensenii 269-3] gi|239529934|gb|EEQ68935.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|260561434|gb|EEX27407.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|281301669|gb|EFA93938.1| transcriptional repressor [Lactobacillus jensenii 208-1] Length = 138 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 39/78 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ GMSQE+L L ++ Q V K+E G + +L+ +S++ + I + Sbjct: 3 QINERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSKLYDVSIDYI 62 Query: 74 FDVSPTVCSDISSEENNV 91 + + + + + Sbjct: 63 VGNTEFDRKEDTQKTSEQ 80 >gi|225874194|ref|YP_002755653.1| helix-turn-helix/cupin domain protein [Acidobacterium capsulatum ATCC 51196] gi|225793366|gb|ACO33456.1| helix-turn-helix/cupin domain protein [Acidobacterium capsulatum ATCC 51196] Length = 260 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ M +LG G++ + + E G L I+ V +S+ Sbjct: 26 KRIGERIKRLRLKKSMGLVELGRHTGLSASFLSQLETGRVVPTLRNLARIAMVFSKDLSY 85 Query: 73 FFDVSP 78 FF+ P Sbjct: 86 FFETEP 91 >gi|83717911|ref|YP_440137.1| Cro/CI family transcriptional regulator [Burkholderia thailandensis E264] gi|83651736|gb|ABC35800.1| transcriptional regulator, Cro/CI family, putative [Burkholderia thailandensis E264] Length = 189 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 4/104 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + N V R+R RM G+SQ +L + G+T + E+ L+ Sbjct: 1 MSEFPSMSN----EVATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQSRVSPSVGSLK 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + E + ++ FF + S + + + + G L Sbjct: 57 KLLECIPMSLAEFFTFEVDENRSVVSRRDEMPNLGNETIGFYLA 100 >gi|56962032|ref|YP_173754.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56908266|dbj|BAD62793.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 145 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G IR+ R +SQE+L E + ++ Q V K+E + + +S++ + I Sbjct: 1 MIGINIRVLRKKHKLSQEQLAEKVNVSRQTVAKWESEEAFPDIFKCKMLSDIFQVTIDQL 60 Query: 74 FDVSPTVCSDISS 86 ++ Sbjct: 61 SRDMSEEEANQLR 73 >gi|270300235|gb|ACZ69041.1| Transcriptional regulator, xre family [Staphylococcus aureus] Length = 207 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 34/90 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I+ R ++Q+++G LG++ Q + +E N L IS+ + + Sbjct: 4 GEQIKQLRKSNEITQQEMGARLGVSRQAISHWENNRNLPDIEMLIIISKEFDISLDILIL 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + + + + + + Sbjct: 64 GGNDMNNMTEKIIRDGSELRKMKMKINAVK 93 >gi|260495101|ref|ZP_05815230.1| transcriptional regulator [Fusobacterium sp. 3_1_33] gi|260197544|gb|EEW95062.1| transcriptional regulator [Fusobacterium sp. 3_1_33] Length = 184 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 39/85 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK++R R GMS +L + ++ + + E+G L+ I+ L+ +++ Sbjct: 1 MTIGKKLRKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + +I + + + +I + Sbjct: 61 LLEDEDDDIRNIEYIKKDSIKYIES 85 >gi|261363946|ref|ZP_05976829.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria mucosa ATCC 25996] gi|296314023|ref|ZP_06863964.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria polysaccharea ATCC 43768] gi|288567969|gb|EFC89529.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria mucosa ATCC 25996] gi|296839393|gb|EFH23331.1| toxin-antitoxin system, antitoxin component, Xre family [Neisseria polysaccharea ATCC 43768] Length = 120 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 6/114 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R G S+E+L E GI+ +Q YE G A L + + + Sbjct: 12 LGERLKKIRTDNGYSREQLSELFGISRASIQNYENGERSPNADYLVQFYKHFGINLHWLL 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + + +D +S+P L Q+D + I L+ Sbjct: 72 TGNKAAKFQ------DFIDSVSSPREEVLLHLARQMDSRTLNHLIDFLMDVYAK 119 >gi|154685684|ref|YP_001420845.1| Xre [Bacillus amyloliquefaciens FZB42] gi|154351535|gb|ABS73614.1| Xre [Bacillus amyloliquefaciens FZB42] Length = 112 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 13/121 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R +QE++ +G++ + YE G + LQ +++ + + Sbjct: 1 MIGGRLKSLRGKK--TQEEVANHIGVSRARYSHYENGRSEPDYDTLQKLADYFKVSTDYL 58 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D+ ++ + LQ+ +Q + +Q+ IE + + EK Sbjct: 59 LTGKEPSDEDMFADPD-----------LQIAYRDMQDFSPESKQQAIEFINYLKEKEKNR 107 Query: 134 R 134 R Sbjct: 108 R 108 >gi|152965999|ref|YP_001361783.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151360516|gb|ABS03519.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 96 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 26/74 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R LGM+Q +L + + +T Q V E G I+ L + F Sbjct: 20 NRVRTTRTALGMTQAELADAVEVTRQTVVAVEAGNYAPSVYLALAIAHRLGRSVEELFGP 79 Query: 77 SPTVCSDISSEENN 90 + S Sbjct: 80 AGAPSRPDSHPATE 93 >gi|75761153|ref|ZP_00741144.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228904571|ref|ZP_04068647.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|74491352|gb|EAO54577.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228855052|gb|EEM99635.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] Length = 194 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 11/108 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ R G+S LGE +G++ Q + +YE G ++ L +I++ L P+ Sbjct: 5 IGKVIKEIRKAKGISAFVLGEMIGVSQQAISQYENGKRKISFEVLNNIAKALNVPMDTLL 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 V+ +E G++ + + K + +++L Sbjct: 65 FVNHEAIEQKIAE-----------RGVEALEKEPSLFNDKTAKGLLKL 101 >gi|323351737|ref|ZP_08087391.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|322122223|gb|EFX93949.1| transcriptional regulator [Streptococcus sanguinis VMC66] Length = 136 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 50/127 (39%), Gaps = 7/127 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K I + R +SQEKL E +G++ Q + K+E G + +++ + + Sbjct: 1 MISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLDEL 60 Query: 74 FDVSPTVCSDISSEENNVMDFIS--TPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + + S + + ++ + L I +K +++ ++ E Sbjct: 61 VHLESNLLTTPSFKGKYIFGTVTVGERGEIHLPPRARNIFQIKAGDQLL-----LLGDEN 115 Query: 132 KYRTIEE 138 + + + Sbjct: 116 QGLALLD 122 >gi|313624590|gb|EFR94572.1| DNA-binding protein [Listeria innocua FSL J1-023] Length = 180 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 38/78 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MDIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD I E + Sbjct: 61 FFDEEEHNQKVIYGELEH 78 >gi|291541572|emb|CBL14682.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 229 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 29/60 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+++R R L ++ ++ E LGI++ YEK + L +++ + + + Sbjct: 1 MLGEKLRELRTELNLNMKQASEKLGISYTTYVGYEKNEREPNSETLIKLADFYKCSVDYL 60 >gi|227552156|ref|ZP_03982205.1| transcriptional regulator [Enterococcus faecium TX1330] gi|227178738|gb|EEI59710.1| transcriptional regulator [Enterococcus faecium TX1330] Length = 213 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 39/82 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 34 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEE 93 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 FF + S+E++ + F Sbjct: 94 FFHQEAANLQVVYSKEDHTVYF 115 >gi|219855859|ref|YP_002472981.1| hypothetical protein CKR_2516 [Clostridium kluyveri NBRC 12016] gi|219569583|dbj|BAH07567.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 208 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 46/113 (40%), Gaps = 1/113 (0%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G ++ R ++ E L + ++ + + E+G+ + L I++ L+ P Sbjct: 27 DIKSIIGINLKNIRKKRQLTLEMLSKLTNVSISMLGEIERGITNPTITVLWKIADGLKIP 86 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + S + + + + + L F I +++ KI+E+ Sbjct: 87 FTDLINEEKPPISVVYNSDAKTI-INESGFKLFSLFNFDPIKKIELYYKILEV 138 >gi|217965105|ref|YP_002350783.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|290893768|ref|ZP_06556748.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|217334375|gb|ACK40169.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|290556717|gb|EFD90251.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|307570335|emb|CAR83514.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes L99] gi|313609965|gb|EFR85345.1| DNA-binding protein [Listeria monocytogenes FSL F2-208] Length = 180 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 38/78 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MDIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD I E + Sbjct: 61 FFDEEEHNQKVIYGELEH 78 >gi|254390836|ref|ZP_05006047.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|326444447|ref|ZP_08219181.1| putative XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197704534|gb|EDY50346.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 199 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 7/120 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + V VG R+R R G+S + E GI+ + + E G R L Sbjct: 1 MKQSPAISQVLDEVGPRLRWLRTQRGVSLTAIAEATGISKSTLSRLESGQRRPSLELLLP 60 Query: 62 ISEVLESPISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 I++ + P+ P + + S N + ++ G + F + R+ Sbjct: 61 IAQAHQVPLDELVGAPEVGDPRIRTSPRSVNGNTVLPLTRQPGP--LQAFKMVL-PATRK 117 >gi|218233568|ref|YP_002366514.1| DNA-binding protein [Bacillus cereus B4264] gi|218161525|gb|ACK61517.1| DNA-binding protein [Bacillus cereus B4264] Length = 181 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|167745559|ref|ZP_02417686.1| hypothetical protein ANACAC_00250 [Anaerostipes caccae DSM 14662] gi|167654871|gb|EDR99000.1| hypothetical protein ANACAC_00250 [Anaerostipes caccae DSM 14662] Length = 323 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R MSQEK+ E L ++ Q V K+E G ++ I+ + + I + Sbjct: 26 KLKDLRRQAKMSQEKMAEKLRVSRQAVTKWETGAGVPDIENVKAIASLFDISIDELLESE 85 Query: 78 PTVCS 82 Sbjct: 86 ERSRQ 90 >gi|325144416|gb|EGC66718.1| DNA-binding protein [Neisseria meningitidis M01-240013] Length = 168 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 12/122 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R L M+Q ++ E G++ + YE+G+++ A E + + + Sbjct: 53 GNRLKEERKKLKMTQAEIAEKCGVSGRMWGDYERGISQPKAELFFQF-EKVGIDVQYVMH 111 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + SE N + +L F + R+ I+ + R +EKK +T Sbjct: 112 GRRGETAVMPSETLNAEE-------QELLVLFREAA-AADREMILMVARR---AEKKAQT 160 Query: 136 IE 137 Sbjct: 161 AL 162 >gi|331666650|ref|ZP_08367524.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli TA271] gi|331065874|gb|EGI37758.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli TA271] Length = 135 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 7/124 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R GM+ + L + I ++ +Q Y +G A L +S L I + Sbjct: 5 ERLREVMDANGMTIKALSDLSKIPYRSLQNYLRGEREPNAEALVALSAHLGVSIDWLLTG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + S F +P L++ Q+ D +VR+ +L+R +++ + Sbjct: 65 KEHIPSKEIVAVPTQHQF--SPSDLKMLELLNQL-DPEVRR---DLMRG-AEEKQRVIEM 117 Query: 137 EEEC 140 E++ Sbjct: 118 EKQL 121 >gi|304397398|ref|ZP_07379276.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304355016|gb|EFM19385.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 185 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 10/128 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+R+ R LG+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GRRLAQIRQTLGLSQRRVAEQAGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFFS 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI---VSSEK 131 + P + ++++ S L+L ID+ ++ + L+ + S+ + Sbjct: 69 EPKPDAEPKVIVRPGDLVEIGSQGVSLKL------IDNGGAQRSLGMLLETYQPGASTGE 122 Query: 132 KYRTIEEE 139 K R EE Sbjct: 123 KLRHPGEE 130 >gi|300690045|ref|YP_003751040.1| transcription regulator protein (modular protein) [Ralstonia solanacearum PSI07] gi|299077105|emb|CBJ49726.1| putative transcription regulator protein (modular protein) [Ralstonia solanacearum PSI07] Length = 209 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 29/88 (32%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ + +R+R R G + + L G++ + E+G A+ L ++ L + Sbjct: 16 VNERIARRVRELRAARGYTLDVLATRCGVSRSMISLIERGAASPTAAVLDKLAAGLGVSL 75 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTP 98 + F P Sbjct: 76 ASLFGGEREGVPAQPLMRRAQQAQWRDP 103 >gi|290474343|ref|YP_003467222.1| putative DNA-binding protein [Xenorhabdus bovienii SS-2004] gi|289173655|emb|CBJ80435.1| putative DNA-binding protein [Xenorhabdus bovienii SS-2004] Length = 121 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 40/74 (54%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R G+SQ +LG+ + + + ++E+G +R G+ L+ +++VL+ + + Sbjct: 11 QRLRELRRQKGLSQSELGKLAELHYTHIGRFERGTSRPGSDTLKRLADVLDVTSDYLLEG 70 Query: 77 SPTVCSDISSEENN 90 + T + E+ Sbjct: 71 AETDAAKARFEDRE 84 >gi|238855117|ref|ZP_04645443.1| transcriptional regulator [Lactobacillus jensenii 269-3] gi|260664949|ref|ZP_05865800.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|282934259|ref|ZP_06339534.1| transcriptional regulator [Lactobacillus jensenii 208-1] gi|313472503|ref|ZP_07812993.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|238832257|gb|EEQ24568.1| transcriptional regulator [Lactobacillus jensenii 269-3] gi|239529936|gb|EEQ68937.1| DNA-binding protein [Lactobacillus jensenii 1153] gi|260561432|gb|EEX27405.1| predicted protein [Lactobacillus jensenii SJ-7A-US] gi|281301668|gb|EFA93937.1| transcriptional regulator [Lactobacillus jensenii 208-1] Length = 136 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 34/94 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R +SQE + L I+ Q + K+E G +L +S++ + + Sbjct: 6 ERLKTLRESSNLSQEDVANKLKISRQSISKWELGDAVPDIGKLMELSKIYNVSLDYLVGR 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + + E S L + + Sbjct: 66 DSSEKVKNTKEALRKKRNASQIILWSLCLAIVCL 99 >gi|255280255|ref|ZP_05344810.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255269346|gb|EET62551.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 106 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 9/108 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R ++Q +L L ++ + + YEKG A L ++++ I + + Sbjct: 2 NRIKELREEKHITQIRLSIDLEVSQETISAYEKGKYYPSAKSLIKLADIFGVSIDYLLGI 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 S S ++ L L + I R+K+I Sbjct: 62 SDIRMSVDATNLKPY-----ERKLLSLTQNMDAIG----REKLISYAE 100 >gi|153954624|ref|YP_001395389.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347482|gb|EDK34018.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] Length = 80 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 41/79 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK IR R+ ++QE+L E GI + +YE G+ +L+ IS+ LE PIS Sbjct: 1 MKVGKNIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISK 60 Query: 73 FFDVSPTVCSDISSEENNV 91 ++ T SS N+ Sbjct: 61 LLELEETEIKKGSSIANSF 79 >gi|186685942|ref|YP_001869138.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186468394|gb|ACC84195.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 377 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 4/113 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D ++ ++ R LGMSQ+ L +T Q + E G+ + +++ L + Sbjct: 4 DSDLRNNLKSIRTRLGMSQQDLANIASVTRQTISGVESGLYAPSVAITLRLAKALGCQVE 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR----YFIQIDDVKVRQKII 120 F + + + V + + + I RQ +I Sbjct: 64 DLFWLERDLPEIEAVLAKPVPNDQQLRVSVARVGGQWIAYPLIGKDAFRQDMI 116 >gi|295105756|emb|CBL03299.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 154 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R G++Q ++ E L +T Q V ++E G + G L+ I+ PI D Sbjct: 9 EIRERNGLTQAEMAERLFVTRQAVSRWECGDTQPGIDALKLIAAEFHVPIEKLLD 63 >gi|260433144|ref|ZP_05787115.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260416972|gb|EEX10231.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 129 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 46/139 (33%), Gaps = 12/139 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P G R+ R GM+Q +L LG+ V +E ++ A++L Sbjct: 1 MSDETDWFGPEAATFGDRLAGAREAAGMTQAQLARRLGVKKATVVGWENDMSEPRANKLS 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ +L I + E + +L ++ +R ++ Sbjct: 61 MMAGMLNVSIMWLLTGEGEGAGVPDLVEGD----------AELAPLVAEL--RAIRGEMR 108 Query: 121 ELVRSIVSSEKKYRTIEEE 139 + EK R E+ Sbjct: 109 ASSERLARVEKALRLKLEK 127 >gi|260550789|ref|ZP_05824996.1| transcriptional regulator [Acinetobacter sp. RUH2624] gi|260406099|gb|EEW99584.1| transcriptional regulator [Acinetobacter sp. RUH2624] Length = 210 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 36/93 (38%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V +VG IR R G+SQ++L + G++ + + E G + ++L I+ VL Sbjct: 32 STVLQHVGTNIRSLRDERGLSQQELADQAGVSRRTIAALETGQVNISLAKLDAIAIVLGV 91 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 + + + + L Sbjct: 92 NFRTIVSAPEHKEHALVNVLAWQGEKEESKATL 124 >gi|163741328|ref|ZP_02148720.1| transcriptional regulator, putative [Phaeobacter gallaeciensis 2.10] gi|161385681|gb|EDQ10058.1| transcriptional regulator, putative [Phaeobacter gallaeciensis 2.10] Length = 445 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 10/127 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR++LG+ Q L + I+ + E R+G L ++ VL S Sbjct: 12 DTLTGSRIRERRLMLGLRQADLARQVKISASYLNLIEHNRRRIGGKLLVDLARVLAVEPS 71 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + E + +L+R + + + S++ Sbjct: 72 MLTEGAEVALLSTLREAAADL----PRPVAELDRV------DEFAGRFPGWAEVLAQSQQ 121 Query: 132 KYRTIEE 138 + ++E Sbjct: 122 RIASLER 128 >gi|120597109|ref|YP_961683.1| XRE family transcriptional regulator [Shewanella sp. W3-18-1] gi|120557202|gb|ABM23129.1| transcriptional regulator, XRE family [Shewanella sp. W3-18-1] Length = 188 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 5/134 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K + G++ + + E+G + + L I+ + Sbjct: 4 INSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S F + +P + + + + +T L + + R +++ + Sbjct: 64 STFLEPTPQSQGTVFRKPDELRQQPATDGML-----VASLFPFEERFGFEMFELTLLPNY 118 Query: 131 KKYRTIEEECMVEQ 144 ++ E + E Sbjct: 119 ERLSEPHETGVTEH 132 >gi|317152201|ref|YP_004120249.1| helix-turn-helix domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942452|gb|ADU61503.1| helix-turn-helix domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 108 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 37/99 (37%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + + +GKRIR R +SQ +L E G+ + + + E+G N + L I+ L Sbjct: 2 DDILLKLGKRIRELRKKKELSQSRLAEMAGLNDKYLGEVERGSNNISVKNLGQIAAALGV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 D + D + I L + Sbjct: 62 ETYELLDGAHEYEIDRKDITQKLHAIIEAASDEDLCAIY 100 >gi|237713948|ref|ZP_04544429.1| conserved hypothetical protein [Bacteroides sp. D1] gi|237722888|ref|ZP_04553369.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262409143|ref|ZP_06085687.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647467|ref|ZP_06725050.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294808929|ref|ZP_06767654.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|229446104|gb|EEO51895.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229447410|gb|EEO53201.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262352890|gb|EEZ01986.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637177|gb|EFF55612.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294443864|gb|EFG12606.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|295085268|emb|CBK66791.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 157 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 50/139 (35%), Gaps = 11/139 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G+ IR R+ M+QE L E + ++ V KYEK + + LQ + L P + Sbjct: 11 VHHGRNIRRTRIEKNMNQEGLSELVHLSQPAVSKYEK-MKVIDDEMLQRFARALNVPFDY 69 Query: 73 FFDVSPTVCSDISSEEN----------NVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + + + + + ++++ KI EL Sbjct: 70 LKTLEEDAQTVVFENNTVNNSEQSAGGANISMGIVKSDTEDSINDSRVNNFNPIDKITEL 129 Query: 123 VRSIVSSEKKYRTIEEECM 141 ++ + + E + Sbjct: 130 YERLLKEKDEKYAALERRL 148 >gi|182676986|ref|YP_001831133.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636616|gb|ACB97389.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 151 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 52/129 (40%), Gaps = 9/129 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI---- 70 +GK+I+ R+ G+SQ+ L G++ Q + E G L+ IS+ LE P Sbjct: 22 IGKKIKDMRVAKGLSQKALSGKSGVSHQYILLIEIGTQNATIGILKRISDALEVPFYSIL 81 Query: 71 --SFFFDVSPTVCSDISSEENNV--MDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + ++ ++++ DF + + + D R I E R++ Sbjct: 82 PDEWLTGGLDEYVLNLFEKQSSHLKKDFADNSMTVSILDNMWKKFDEA-RTMIEEAQRAL 140 Query: 127 VSSEKKYRT 135 ++ ++ Sbjct: 141 GDILERVKS 149 >gi|160933079|ref|ZP_02080468.1| hypothetical protein CLOLEP_01922 [Clostridium leptum DSM 753] gi|156868153|gb|EDO61525.1| hypothetical protein CLOLEP_01922 [Clostridium leptum DSM 753] Length = 152 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G + R G+SQE + E LG++ Q + K+E G + + ++ + + + Sbjct: 1 MNLGNSLFHARKRRGLSQEDVAEKLGVSRQTISKWETGETIPDIRQCKRLAVLYQMSLDE 60 Query: 73 FFDVSPTVCS 82 D Sbjct: 61 LIDFDINTAE 70 >gi|49183978|ref|YP_027230.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|227816122|ref|YP_002816131.1| hypothetical protein BAMEG_3548 [Bacillus anthracis str. CDC 684] gi|254682796|ref|ZP_05146657.1| hypothetical protein BantC_02950 [Bacillus anthracis str. CNEVA-9066] gi|254740143|ref|ZP_05197835.1| hypothetical protein BantKB_03819 [Bacillus anthracis str. Kruger B] gi|49177905|gb|AAT53281.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|227003523|gb|ACP13266.1| hypothetical protein BAMEG_3548 [Bacillus anthracis str. CDC 684] Length = 92 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + + + Sbjct: 65 DEELTQKVIEDSKQLAYP 82 >gi|328553993|gb|AEB24485.1| DNA-binding protein [Bacillus amyloliquefaciens TA208] Length = 128 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 49/126 (38%), Gaps = 2/126 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + KR+++ R ++Q +L + + T + YE G + L+ +++ L++ + Sbjct: 1 MLSKRLKICRKQKKLTQTELAQKVKTTKGTISNYENGHSTPSNEMLRDLADALDTTTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + I F LQL + + +++ I+ ++ + E++ Sbjct: 61 LGRIDNHMNFIRESSEFYDTFGDDD--LQLAFREARDFSEESQKQAIDFIKYLKEKEERE 118 Query: 134 RTIEEE 139 + Sbjct: 119 GRKSRK 124 >gi|288554829|ref|YP_003426764.1| hypothetical protein BpOF4_09080 [Bacillus pseudofirmus OF4] gi|288545989|gb|ADC49872.1| hypothetical protein BpOF4_09080 [Bacillus pseudofirmus OF4] Length = 290 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +DI+ +GK I+ R + G++Q L E + T Q+ E G ++ L IS L Sbjct: 1 MDIHTIGKNIKFYRTLKGLTQNDLAEGI-CTQAQISNIEAGKFIPLSTTLFEISRRLGVD 59 Query: 70 ISFFFDVSPTVCSDISSE 87 ++ FF + D + Sbjct: 60 MTHFFHEASNPRYDYIQD 77 >gi|225019957|ref|ZP_03709149.1| hypothetical protein CLOSTMETH_03916 [Clostridium methylpentosum DSM 5476] gi|224947321|gb|EEG28530.1| hypothetical protein CLOSTMETH_03916 [Clostridium methylpentosum DSM 5476] Length = 125 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 49/114 (42%), Gaps = 8/114 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R++ R ++Q+ + + + +T + YE GVN + +++ + Sbjct: 1 MIISQRLKDLRSDADLNQQDVADAVNVTQSSISNYELGVNLPDLDVVIKLAKFFNVSSDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ---IDDVKVRQKIIELV 123 +D+ + +++ D I P G F++ D R+ +I+++ Sbjct: 61 LL-----GITDVKTSWSDMKDHIILPSGKVPITKFLRDVKSLDTNDRESLIQVL 109 >gi|325956992|ref|YP_004292404.1| transcriptional regulator [Lactobacillus acidophilus 30SC] gi|325333557|gb|ADZ07465.1| transcriptional regulator [Lactobacillus acidophilus 30SC] Length = 122 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 3/108 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + I+ R ++Q +L + L ++ Q V +E G G+ L +++ + + Sbjct: 7 KILANNIKELRKQKRLNQVELAKQLNVSQQTVGAWETGRAIPGSDTLDILADFFDVSTDY 66 Query: 73 FFDVSPTVCSDISS---EENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 D ++ E+ +L + I ++ Sbjct: 67 LLGRETNSKKDNTALTWEDLKTPMPYGGKMPEELQDMYADIAKSYFKR 114 >gi|319937843|ref|ZP_08012245.1| DNA-binding protein [Coprobacillus sp. 29_1] gi|319807073|gb|EFW03689.1| DNA-binding protein [Coprobacillus sp. 29_1] Length = 194 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I+ R+ +SQE+L + + +T Q + +E G N + + +S + + Sbjct: 1 MKISSQIKKYRLESSLSQEELADKIFVTRQTISNWENGKNYPDINSIVLLSTLFGISLDI 60 Query: 73 FFDVSPTVCSDISSEEN 89 + E+ Sbjct: 61 LVKGDLEEMKEHIRNED 77 >gi|260906368|ref|ZP_05914690.1| hypothetical protein BlinB_13653 [Brevibacterium linens BL2] Length = 180 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 30/86 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R GM+ L G++ + + E+G L I++ + P+ FF Sbjct: 2 GALIRSLRESAGMTLTDLSRMAGVSQGLLSQIERGRGNPAYLTLLKIAKAFDVPVGRFFG 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL 101 + + T GL Sbjct: 62 SGGEPADNRVVRADKRRQLQVTDRGL 87 >gi|227485924|ref|ZP_03916240.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227236157|gb|EEI86172.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 207 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 47/115 (40%), Gaps = 3/115 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R LG++ E+ G+ LG+T + E G + + I V + + Sbjct: 3 ENIKKLRQELGLTMEEFGKNLGVTRSAISNIENGYRNLTEQMILAICNVYNVNEQWLRNG 62 Query: 77 SPTVCSDISSEENN--VMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + + + + D+ + + +I++ D K R+ +++ I S Sbjct: 63 TGDMFVEDTDSLIEKIISDYPLDKLSQTILKTYIEL-DPKKREIFNYVMKQIADS 116 >gi|239827077|ref|YP_002949701.1| XRE family transcriptional regulator [Geobacillus sp. WCH70] gi|239807370|gb|ACS24435.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70] Length = 108 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 41/98 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG+RIR R +S +L + LGI+ ++ + E G + S +Q E + P+ Sbjct: 3 INKKVGERIREVRKKYNLSMMQLADELGISQPRLSRIENGDQEIPISLIQKFCERFDIPL 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 S FF S N ++ + + + Sbjct: 63 SSFFRSLEKDEKAGDSLINEQLEQVLASLNDEQKKALY 100 >gi|125973269|ref|YP_001037179.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256003748|ref|ZP_05428736.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281417471|ref|ZP_06248491.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|125713494|gb|ABN51986.1| transcriptional regulator, XRE family with cupin sensor [Clostridium thermocellum ATCC 27405] gi|255992309|gb|EEU02403.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281408873|gb|EFB39131.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|316940499|gb|ADU74533.1| Cupin 2 conserved barrel domain protein [Clostridium thermocellum DSM 1313] Length = 179 Score = 49.4 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R+ M+QE+L + ++ + + E + + L I + L + + Sbjct: 1 MQIGAKIRQLRIANQMTQEELADRAELSKGFISQIENDLTSPSINTLVDILQCLGTDLKT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 FF S ++ + ++ Sbjct: 61 FFSDSEDKQIVFREKDYFSKTDNELKNTIE 90 >gi|324992649|gb|EGC24570.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK405] gi|324995822|gb|EGC27733.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK678] gi|327460052|gb|EGF06391.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1] gi|327488642|gb|EGF20442.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1058] Length = 167 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 2/79 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDY 60 Query: 73 FF--DVSPTVCSDISSEEN 89 + + SE+ Sbjct: 61 LLLEEGDKPEIKPVLSEDE 79 >gi|288560691|ref|YP_003424177.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288543401|gb|ADC47285.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 186 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V+ ++G RIR R + ++ E + L + + YE G+ + AS L I+ + + Sbjct: 5 SDVNKDIGMRIRELRELSDITTEDMANELDVDEETYISYEDGIIDIPASFLYQIAHIFKV 64 Query: 69 PISFFFDVSPTV 80 ++ T Sbjct: 65 DLALILTGEETR 76 >gi|225405526|ref|ZP_03760715.1| hypothetical protein CLOSTASPAR_04746 [Clostridium asparagiforme DSM 15981] gi|225042938|gb|EEG53184.1| hypothetical protein CLOSTASPAR_04746 [Clostridium asparagiforme DSM 15981] Length = 257 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 34/73 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R G+SQE+LG +G+T Q V K+E G +L +S+ + I Sbjct: 11 EQLIKLRKQKGLSQEQLGAAVGVTRQTVSKWELGDTTPELGKLVQLSDYFQLSIDELVGH 70 Query: 77 SPTVCSDISSEEN 89 + D + E N Sbjct: 71 AAENDGDRTVELN 83 >gi|254390107|ref|ZP_05005328.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326441822|ref|ZP_08216556.1| helix-turn-helix domain protein [Streptomyces clavuligerus ATCC 27064] gi|197703815|gb|EDY49627.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 420 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 46/117 (39%), Gaps = 7/117 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R G+SQE+L E G++ VQK E+G V L I+ L S Sbjct: 4 EIGDNIKRYRRAEGLSQEELAEKAGLSVSTVQKAEQGRGAVRTQTLHTIARGLGVTTSAL 63 Query: 74 FDVSPTVC----SDISSEENNVMDFISTPDGLQ--LNRYFIQIDD-VKVRQKIIELV 123 F P + + P G+ L ++ D +R++++ + Sbjct: 64 FVAGPPEPVVGDDATKQSLVAIRAALMPPIGIDGVLVASVPKVGDLSALRRRVLAIH 120 >gi|218780466|ref|YP_002431784.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218761850|gb|ACL04316.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 115 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 15/122 (12%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +GKRI R+ ++Q +L E +G++ + + + E+GV L ++E L S + Sbjct: 4 LEKKIGKRIAELRIENNLTQAQLAEAMGLSVESISRMERGVTFPSVKTLARVAEALGSSL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FFD L+L + QI ++ + + L+R I+ Sbjct: 64 KQFFDFDEDEGQGDG-------------YQLELAKLIAQIKNLDEGE--VALLRKILREI 108 Query: 131 KK 132 +K Sbjct: 109 EK 110 >gi|149022031|ref|ZP_01835993.1| phage transcriptional repressor [Streptococcus pneumoniae SP23-BS72] gi|147929875|gb|EDK80864.1| phage transcriptional repressor [Streptococcus pneumoniae SP23-BS72] Length = 263 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 9/138 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K++ + + I R G++Q++L + +GIT + Y K + +Q Sbjct: 1 MDEKKRM-----QIIAENITHFRKQRGITQKELAKEVGITASTMTDYMKLRSAPSFGVIQ 55 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +++ S ++ + + + +QL +I V + Sbjct: 56 KLADYFGVKKSDIDTTFKEESTNSLPDAPDSLTQQIMDKVVQLTPPNQKI----VLRTSE 111 Query: 121 ELVRSIVSSEKKYRTIEE 138 EL+ S E K + E Sbjct: 112 ELLESQNEEETKINEVSE 129 >gi|70730925|ref|YP_260666.1| Cro/CI family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68345224|gb|AAY92830.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens Pf-5] Length = 126 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 8/125 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R LG+SQ+ GE G+ KYE G A L ++ + + Sbjct: 10 IGSRLRQERERLGLSQKVFGEIGGVEANAQGKYESGDRAPKADYLSRVAAK-GVDVLYVL 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 S + L R + D + + L S ++ + Sbjct: 69 TGSRIPIQSGGLSQTE-------EKVLDCYRALFKEDQDAICRLTSTLAELSASQGERRK 121 Query: 135 TIEEE 139 E Sbjct: 122 AQVRE 126 >gi|325697038|gb|EGD38925.1| XRE family transcriptional regulator [Streptococcus sanguinis SK160] Length = 225 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 2/96 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RRM L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVD- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 T +L +I Sbjct: 64 -ETSALYTYPLLTAPHKKEVDQLASRLLERQRKISS 98 >gi|313499638|gb|ADR61004.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 185 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 38/114 (33%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R M+ ++L E G+ + K E V +L + L I+ F Sbjct: 2 GQRLRQVRKARQMTLKQLSEASGVPLSTLSKMELAQVSVSYEKLAAAARALNVDIAQLFR 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S TV + + + Y+ D R+ R I Sbjct: 62 ASGTVSAPVPVTVVVDSLPAAAGYSTGTYDYYPIAGDFPARRMTPAYARIIARE 115 >gi|262373689|ref|ZP_06066967.1| y4mF family transcriptional regulator [Acinetobacter junii SH205] gi|262311442|gb|EEY92528.1| y4mF family transcriptional regulator [Acinetobacter junii SH205] Length = 183 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 38/94 (40%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ V VG+ IR R +SQ++L E G++ + + E G+ + ++L I+ L+ Sbjct: 4 PDAVLQYVGQNIRFYRNQHQLSQQELAERAGVSRRTIASLETGMVNISLTKLDAIANALD 63 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 V S + + + L Sbjct: 64 VNFKQLVTAPELVDSAVVKTLAWQGTHLESQATL 97 >gi|256843791|ref|ZP_05549278.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|262047764|ref|ZP_06020716.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|293381647|ref|ZP_06627629.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|312977082|ref|ZP_07788831.1| helix-turn-helix domain-containing protein [Lactobacillus crispatus CTV-05] gi|256613696|gb|EEU18898.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|260571969|gb|EEX28537.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|290921789|gb|EFD98809.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|310896410|gb|EFQ45475.1| helix-turn-helix domain-containing protein [Lactobacillus crispatus CTV-05] Length = 270 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +R R LG++Q+++ + IT K EKG NR+ L I + +S+ Sbjct: 1 MDIGTALRHLRDDLGLTQKQMIQGTKITVSHYSKLEKGQNRIFIENLVEILKQRNISLSY 60 Query: 73 F----FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY---FIQIDDVKVRQK---IIEL 122 F + + SE N+ + + + + ++R + I+++ Sbjct: 61 FVDHYLNDENSEKEVNYSEILNIAFYEKDKIAAEEIKRQIFSDKSSSNELRDRATLIVDM 120 Query: 123 V 123 + Sbjct: 121 I 121 >gi|228986400|ref|ZP_04146536.1| hypothetical protein bthur0001_30820 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773221|gb|EEM21651.1| hypothetical protein bthur0001_30820 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 374 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNVSIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ--------LNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + + + + + + ++ ++ + Sbjct: 64 LICYTPQMEPEDIKDLYHRLAEAFSERPFEEVMIECRGMIKKYYSCFPLLLQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K + EE M Sbjct: 124 HMLTEDTDKRIEMLEEAM 141 >gi|300774465|ref|ZP_07084328.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300506280|gb|EFK37415.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 189 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 30/75 (40%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N I +GKR++ R ++ +L ++ V + E G L + + LE Sbjct: 2 NDFLIGIGKRLKDIRKKNNLTINELAFKANVSNGLVSRIENGRTIPSLPVLLDLIQSLEI 61 Query: 69 PISFFFDVSPTVCSD 83 S+FF+ + Sbjct: 62 DASYFFEGVEKKSNA 76 >gi|221214621|ref|ZP_03587591.1| helix-turn-helix domain protein [Burkholderia multivorans CGD1] gi|221165511|gb|EED97987.1| helix-turn-helix domain protein [Burkholderia multivorans CGD1] Length = 163 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 1/83 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ +G R++ RM +G+SQ + G+ Q YE G A+ L +++ + + Sbjct: 2 VEKMIGDRLKEERMRIGLSQAEFAALGGLGKQAQLNYESGTRSPDANYLAALAK-IGVDV 60 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + S + + +++D Sbjct: 61 LYVITGERATQSKLPPDVADLVD 83 >gi|254389389|ref|ZP_05004617.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294817070|ref|ZP_06775712.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|326445868|ref|ZP_08220602.1| putative XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197703104|gb|EDY48916.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294321885|gb|EFG04020.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 246 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 6/111 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R+R R G++ L G++ + + E G R L ++ Sbjct: 7 DEVLDAVGPRLRALRRDRGITLADLATTTGVSESTLSRLENGQRRPTLELLLPLARTYNV 66 Query: 69 PISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 P+ P V S +S G F I + Sbjct: 67 PLDDLVGAPRTGDPRVHLKPVSRFGITFVPLSRRPGG--VHAFKMIIPARP 115 >gi|157150768|ref|YP_001451299.1| Cro/CI family transcriptional regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075562|gb|ABV10245.1| transcriptional regulator, Cro/CI family [Streptococcus gordonii str. Challis substr. CH1] Length = 167 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 31/81 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLADKLFELRKEKGWSQEKLSEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + D Sbjct: 61 LLLEDSDKPEIKPVLSEDEKD 81 >gi|118444657|ref|YP_877308.1| DNA-binding protein [Clostridium novyi NT] gi|118135113|gb|ABK62157.1| DNA-binding protein, putative [Clostridium novyi NT] Length = 185 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R+ G++Q L ++ + + E+ + + L I E L + + Sbjct: 7 MNIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNLKD 66 Query: 73 FFDVSPTVCSDISSEE 88 FF+ S E+ Sbjct: 67 FFNNDEEEKIVFSKED 82 >gi|116619051|ref|YP_819422.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097898|gb|ABJ63049.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 183 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 14/102 (13%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ +R + ++Q +L L ++ + + +E G + IS+ L + F Sbjct: 7 IKEKRQKMSLTQMELANKLLVSNKTISNWETGKTLPDIENIILISKYLNISLDDLFLGDE 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 T+ + + R F +I + + II Sbjct: 67 TMVGKLRENQQE--------------RKFYRIVTISLISAII 94 >gi|30019868|ref|NP_831499.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229043585|ref|ZP_04191294.1| Transcriptional regulator, MerR [Bacillus cereus AH676] gi|229127155|ref|ZP_04256152.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|29895413|gb|AAP08700.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] gi|228656271|gb|EEL12112.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|228725807|gb|EEL77055.1| Transcriptional regulator, MerR [Bacillus cereus AH676] Length = 181 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|254293850|ref|YP_003059873.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254042381|gb|ACT59176.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 474 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 11/109 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-- 70 + +G +IR R+ M+Q+ E L ++ + + E V A L +++ + Sbjct: 11 LFIGHKIREARLKNQMTQKAFAEALNVSTSYLNQLENNQRHVTAGILLALAQTFGLDLKT 70 Query: 71 ------SFFFDVSPTVCSDISSEENNVMDF---ISTPDGLQLNRYFIQI 110 F+ D S + + + ++ Q + Q+ Sbjct: 71 LGGRESDILFNELKEASKDELSHLSEITERELALAVKHAPQFAAAYSQL 119 >gi|227536492|ref|ZP_03966541.1| hypothetical protein HMPREF0765_0736 [Sphingobacterium spiritivorum ATCC 33300] gi|227243569|gb|EEI93584.1| hypothetical protein HMPREF0765_0736 [Sphingobacterium spiritivorum ATCC 33300] Length = 123 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 35/69 (50%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G+R+R R ++ EKL E GI ++Q+ E G G S L I++ L+ Sbjct: 52 DDIIKALGQRVRDLRSERKLTMEKLAELSGIDYRQLSYIELGQTDPGLSTLHAIAKGLDI 111 Query: 69 PISFFFDVS 77 +SF D Sbjct: 112 TLSFLMDSE 120 >gi|291456538|ref|ZP_06595928.1| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium breve DSM 20213] gi|291381815|gb|EFE89333.1| toxin-antitoxin system, antitoxin component, Xre family [Bifidobacterium breve DSM 20213] Length = 137 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 6/132 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+ IR R + GM+Q +L E +G+T V+ YE G+ V L+ I++ L ++ Sbjct: 1 MSVGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESIADTLGVSVNA 60 Query: 73 FFDVSPTVCSDISS-----EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS-I 126 D D+ S E++ + + GL LN ++ R+ + Sbjct: 61 LKDYGVENAGDLMSLLVRLEDSFGIVPAADGAGLSLNPKAPHAPKAATAIRLWAEKRAQL 120 Query: 127 VSSEKKYRTIEE 138 + E R E+ Sbjct: 121 ENGEIDAREYED 132 >gi|163732391|ref|ZP_02139837.1| DNA-binding protein [Roseobacter litoralis Och 149] gi|161394689|gb|EDQ19012.1| DNA-binding protein [Roseobacter litoralis Och 149] Length = 71 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V VG+ ++ R G SQE L G+ V E+GV L+ I+E L+ P Sbjct: 2 DVRQRVGRNLKKYRKQAGFSQEGLALECGLHRTYVSGVERGVRNPTVVVLERIAEALKVP 61 Query: 70 ISFFFDVSPT 79 + D S + Sbjct: 62 AARLLDDSES 71 >gi|163745028|ref|ZP_02152388.1| DNA-binding protein [Oceanibulbus indolifex HEL-45] gi|161381846|gb|EDQ06255.1| DNA-binding protein [Oceanibulbus indolifex HEL-45] Length = 227 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 49/123 (39%), Gaps = 5/123 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N + + + R++ R G+S + + + G++ V + E+G + + L Sbjct: 40 MTENN---DKILTQLPARLKEARQGQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLW 96 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +++ L+ + D +PT V + G ++ + + R ++ Sbjct: 97 NLTRALQVDFAGLLDGAPTEAQIEVLRSAAVPTINNLGSGCRI--RILSPPEEAGRHEVY 154 Query: 121 ELV 123 EL+ Sbjct: 155 ELL 157 >gi|154499890|ref|ZP_02037928.1| hypothetical protein BACCAP_03547 [Bacteroides capillosus ATCC 29799] gi|150271488|gb|EDM98745.1| hypothetical protein BACCAP_03547 [Bacteroides capillosus ATCC 29799] Length = 451 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 34/86 (39%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K++P+ I G I R GM+Q++L LGI+ + V K+E+G + + + Sbjct: 29 KKEVPHMDSIRTGSFIASLRREKGMTQKELASLLGISDKAVSKWERGESYPEITLFPALG 88 Query: 64 EVLESPISFFFDVSPTVCSDISSEEN 89 L + + E Sbjct: 89 ATLGVTADELMAGERQPHTPTEAPEP 114 >gi|54298316|ref|YP_124685.1| hypothetical protein lpp2375 [Legionella pneumophila str. Paris] gi|53752101|emb|CAH13528.1| hypothetical protein lpp2375 [Legionella pneumophila str. Paris] Length = 220 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 1/107 (0%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G RI R LG++ ++L E ++ ++ +E+G G + +++ L Sbjct: 2 DIREQIGNRITKARKELGITIKELAERTAELSPARISNWEQGTRSPGPMEAKLLADQLNV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 ++ ++ D+ N I + + Sbjct: 62 SAAYLLCLTDNPQGDLIQNPENKFRHIPLLSMKDAIHAKEILGQQEP 108 >gi|168204476|ref|ZP_02630481.1| transcriptional regulator [Clostridium perfringens E str. JGS1987] gi|170663962|gb|EDT16645.1| transcriptional regulator [Clostridium perfringens E str. JGS1987] Length = 184 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 33/71 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +++ +G R++ R +S ++ E G++ + + E+G + S L I+ L+ Sbjct: 3 DLNLIIGNRLKTIRNNRNLSLSEVSEITGVSKAMLGQIERGQSNPTVSTLWKIANGLKVS 62 Query: 70 ISFFFDVSPTV 80 S F D + Sbjct: 63 FSMFIDENKED 73 >gi|110677426|ref|YP_680433.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109453542|gb|ABG29747.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 215 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 8/102 (7%) Query: 1 MVGNKKIPNPV--------DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 M + P+ V ++ +G+ +R R GM+ +L ++ + K E G Sbjct: 9 MTKLIQDPHGVREEREKVLEVAIGREVRAYRKQKGMTVAELSRLTDLSIGMLSKIENGNT 68 Query: 53 RVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDF 94 + LQ ++ L P++ FF + ++ ++ Sbjct: 69 SPSLTTLQALANALSVPLTAFFKGFEEHREAVHTKAGEGLEI 110 >gi|325688189|gb|EGD30208.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] gi|327469056|gb|EGF14528.1| XRE family transcriptional regulator [Streptococcus sanguinis SK330] Length = 225 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + T Sbjct: 65 TST 67 >gi|317133873|ref|YP_004089784.1| transcriptional regulator, XRE family [Ruminococcus albus 7] gi|315450335|gb|ADU23898.1| transcriptional regulator, XRE family [Ruminococcus albus 7] Length = 208 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 15 VGKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRI+ R+ G+SQ +L + + + K E G + S++ I+E+L+ S+ Sbjct: 5 IGKRIKEARIKKGLSQTELAGKLGYKSRSSINKIETGGRDIPKSQVVKIAEILDLTPSYL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTP 98 + +I S E M + Sbjct: 65 MGWENSPAHNILSREKIHMIPVYNS 89 >gi|257438888|ref|ZP_05614643.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198703|gb|EEU96987.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 99 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G RIR R G++QE+L L ++ + K E G LQ +S L + Sbjct: 6 KEFGGRIRDLRKKKGITQEQLSIMLNVSANHLAKVETGSRCCSIELLQDLSSCLNVRTDY 65 Query: 73 FFDVSPTVCS 82 + + Sbjct: 66 LLNGDAPHNN 75 >gi|253681413|ref|ZP_04862210.1| DNA-binding protein [Clostridium botulinum D str. 1873] gi|253561125|gb|EES90577.1| DNA-binding protein [Clostridium botulinum D str. 1873] Length = 179 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R+ G++Q L ++ + + E+ + + L I E L + + Sbjct: 1 MKIGEKLKQLRIEKGLTQMDLASRCELSKGFISQLERDLTSPSIATLVDILECLGTNLKD 60 Query: 73 FFDVSPTVCSDISSEE 88 FF+ S E+ Sbjct: 61 FFNNDEEEKIVFSKED 76 >gi|229150033|ref|ZP_04278258.1| Transcriptional regulator, MerR [Bacillus cereus m1550] gi|228633471|gb|EEK90075.1| Transcriptional regulator, MerR [Bacillus cereus m1550] Length = 181 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMANITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|225570465|ref|ZP_03779490.1| hypothetical protein CLOHYLEM_06566 [Clostridium hylemonae DSM 15053] gi|225160662|gb|EEG73281.1| hypothetical protein CLOHYLEM_06566 [Clostridium hylemonae DSM 15053] Length = 194 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 38/76 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+++ R+ ++QE+L + ++ + + E+ + + L + +VL + I+ Sbjct: 16 MDIGKKLKELRIAKDLTQEELADRAELSKGFISQLERDLTSPSIATLVDLLQVLGTTINE 75 Query: 73 FFDVSPTVCSDISSEE 88 FF P E+ Sbjct: 76 FFSEDPEEQIVFHDED 91 >gi|89069978|ref|ZP_01157310.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516] gi|89044426|gb|EAR50557.1| DNA-binding protein, putative [Oceanicola granulosus HTCC2516] Length = 201 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D +G R+R R + E+ G+ + K E G L+ ++ L+ Sbjct: 17 PLD--LGARVRELRKERDWTLEQAARKAGLARSTLSKIENGQMSPTYDALKKLATGLDIS 74 Query: 70 ISFFFD 75 I F Sbjct: 75 IPQLFT 80 >gi|329577403|gb|EGG58858.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 180 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 1/91 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF P + I+ E + G +L Sbjct: 61 FFSQQP-LEQKIAYNEEESTLYYDEEHGYEL 90 >gi|325957661|ref|YP_004293073.1| XRE family transcriptional regulator [Lactobacillus acidophilus 30SC] gi|325334226|gb|ADZ08134.1| XRE family transcriptional regulator [Lactobacillus acidophilus 30SC] gi|327184304|gb|AEA32751.1| XRE family transcriptional regulator [Lactobacillus amylovorus GRL 1118] Length = 272 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 47/127 (37%), Gaps = 9/127 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R LG++Q ++ + IT K E+ + + A L I + Sbjct: 1 MTIGEALKKERKDLGLTQAEMAAGV-ITTAHYSKIERDKHDISAYDLFEILTKNNINLVD 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F + N L+L F Q D VR E+ S + E+K Sbjct: 60 FIKEIEDTYQSTPENQIN--------LNLRLIHAFYQSDQKSVRILNKEIQESAATKEEK 111 Query: 133 YRTIEEE 139 R I E Sbjct: 112 LRAILIE 118 >gi|325959832|ref|YP_004291298.1| helix-turn-helix domain-containing protein [Methanobacterium sp. AL-21] gi|325331264|gb|ADZ10326.1| helix-turn-helix domain protein [Methanobacterium sp. AL-21] Length = 190 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 12/122 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N+ VG++IR R +S E+L E ++ + V+K E S L Sbjct: 1 MSENR---------VGEKIRQLRESKNISIEELAENSDLSVEMVEKLESNTVMPSLSPLL 51 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL---NRYFIQIDDVKVRQ 117 I++ L+ + F D +P + + + L F + K + Sbjct: 52 KIAKALDVRLGTFLDDAPQSGPVVVKSGKSENVMRFSGKNTDLKESTLEFYSLASGKTDR 111 Query: 118 KI 119 + Sbjct: 112 HM 113 >gi|288572784|ref|ZP_06391141.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568525|gb|EFC90082.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 211 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 8/130 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R G +Q+ L +G+T + +EK L +++ L +F Sbjct: 4 GNDLKRLRKEKGWTQQDLASRVGVTKTTILDWEKDRYSPVGQNLISLAKALNVSAAFIMG 63 Query: 76 V--SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 P+ V+ ++ GL L+ ID E + + E + Sbjct: 64 ETNDPSPQGTGKKAPEGVLRYLRDQTGLSLDEAAALIDLPA------EDLELMEQYEDRA 117 Query: 134 RTIEEECMVE 143 ++ +++ Sbjct: 118 DDTLKQKLIK 127 >gi|162453255|ref|YP_001615622.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] gi|161163837|emb|CAN95142.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] Length = 186 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 7/99 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K I+ R G++Q++L + G+ E G L + L+ I Sbjct: 11 LAKNIKQLREARGLTQQQLAKLAGVPRATWAHLESGAANPTLGVLHRAAAALQVSIEEML 70 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 C + + + G L R + D Sbjct: 71 SAPRATCQLYARDALP-----TRSPGQALVRKL--LPDP 102 >gi|126669228|ref|ZP_01740140.1| probable transcriptional regulator [Marinobacter sp. ELB17] gi|126626309|gb|EAZ96991.1| probable transcriptional regulator [Marinobacter sp. ELB17] Length = 237 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 8/124 (6%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N V + +G+R++ R+ GMSQ KLG +T Q + + +S ++ L Sbjct: 4 NEVSMALGQRLKEVRVQRGMSQAKLGALADLT-QAAIGALESRDSKHSSMALQLARALHV 62 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFIS------TPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + + E D + L L + + + R KI++ Sbjct: 63 SVDWLVTGEGPKSVPDADGECGDTDLYAGAPLNERDVMLHLLLELPRDLETE-RTKIVQS 121 Query: 123 VRSI 126 R++ Sbjct: 122 GRAV 125 >gi|331090732|ref|ZP_08339579.1| hypothetical protein HMPREF9477_00222 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399840|gb|EGG79499.1| hypothetical protein HMPREF9477_00222 [Lachnospiraceae bacterium 2_1_46FAA] Length = 150 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 27/66 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + I+ R ++Q++L + L ++ Q + ++E G + ++ L+ + Sbjct: 1 MALSDNIKKFREEKNLTQQQLADKLYVSRQTICRWENGSRCPDLITAKKLALELDVSMDE 60 Query: 73 FFDVSP 78 Sbjct: 61 LISDED 66 >gi|322420304|ref|YP_004199527.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18] gi|320126691|gb|ADW14251.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18] Length = 181 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ RM+ ++QE+L +T + + E + L+ I +V + Sbjct: 1 MKIGERLKRLRMVNSLTQEELASRADLTKGFISQLENDATSPSIATLKDIVDVFGISMQE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + ++L Sbjct: 61 FFSEETDQDIVFGKDARVQATDDGDSVKVELL 92 >gi|319744460|gb|EFV96817.1| phage transcriptional repressor [Streptococcus agalactiae ATCC 13813] Length = 230 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G ++ RM SQ +L L I K+E G + L ++ +L+ P ++F Sbjct: 4 GSNLKELRMEKQYSQSELANLLKINRASYNKWESGKSVPNQKNLSALARILDVPTTYF 61 >gi|315222273|ref|ZP_07864179.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315188606|gb|EFU22315.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 290 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 50/107 (46%), Gaps = 1/107 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I + R++ +R+ LG+SQ++L E + Q+ + EKG G+ L +S+ + + Sbjct: 1 MSILLATRLKSKRLELGLSQKELAEGV-CEQGQISRMEKGKYMPGSDLLYSLSKKMNVTM 59 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++FFD S + + +++ +Y ++ K + Sbjct: 60 NYFFDDSVLDETSKLVQFKELVESFLVKREYDSLKYLYSLEIDKQHR 106 >gi|289433492|ref|YP_003463364.1| Lambda repressor-like, DNA-binding domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169736|emb|CBH26272.1| Lambda repressor-like, DNA-binding domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 111 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 1/107 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G++QE L E L T Q + +YE G + L ++++ + Sbjct: 3 LNKFVGNKIKQYREERGLNQEALAERLHTTRQTISRYENGDRKANQDILFELAKIFNKRL 62 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 FF + + + +D T + L+ +I++ R Sbjct: 63 DDFFPERNLPPADERGMTIAAHIDDDVTDEELRDILAYIEMKKKLHR 109 >gi|229029542|ref|ZP_04185622.1| hypothetical protein bcere0028_16320 [Bacillus cereus AH1271] gi|228731741|gb|EEL82643.1| hypothetical protein bcere0028_16320 [Bacillus cereus AH1271] Length = 95 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 6 KIPNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P D+ +G++++ R G SQE + + +G+T Q V K+E + L +SE Sbjct: 11 KNFKPGDVMSLGQQLKRLRESKGFSQEDVAKKIGVTRQAVYKWEHDKSCPDIDNLILLSE 70 Query: 65 VLESP 69 + Sbjct: 71 MYNVT 75 >gi|186471163|ref|YP_001862481.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184197472|gb|ACC75435.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 189 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + VD +G RIR R G S L E G++ V K E+G + AS L ++ Sbjct: 6 DNVDQRIGARIRAEREGRGWSLTSLAEKSGVSRAMVHKVERGESSPTASLLAKLAGAFGM 65 Query: 69 PISFFFDVSPTVCSDIS--SEENNVMDFIS 96 +S ++ + +E+ +D S Sbjct: 66 SMSALLALAELEDGRLLRRAEQPLWVDPQS 95 >gi|67078349|ref|YP_245967.1| transcriptional regulator [Bacillus cereus E33L] gi|66970655|gb|AAY60629.1| transcriptional regulator [Bacillus cereus E33L] Length = 87 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R+ GM+Q +L + ++ Q + EKG I + L ++ F Sbjct: 27 KVKRIRLEKGMTQGELAKLTNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLFWEE 86 Query: 78 P 78 Sbjct: 87 D 87 >gi|30263988|ref|NP_846365.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Ames] gi|49186829|ref|YP_030081.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Sterne] gi|50196954|ref|YP_052642.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. 'Ames Ancestor'] gi|65321313|ref|ZP_00394272.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165872120|ref|ZP_02216759.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0488] gi|167633504|ref|ZP_02391828.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0442] gi|167640973|ref|ZP_02399230.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0193] gi|170688808|ref|ZP_02880012.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0465] gi|170705742|ref|ZP_02896205.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0389] gi|177654324|ref|ZP_02936253.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0174] gi|190566003|ref|ZP_03018922.1| prophage LambdaBa02, repressor protein [Bacillus anthracis Tsiankovskii-I] gi|227816690|ref|YP_002816699.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. CDC 684] gi|229604569|ref|YP_002868219.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0248] gi|254683682|ref|ZP_05147542.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. CNEVA-9066] gi|254721519|ref|ZP_05183308.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A1055] gi|254736027|ref|ZP_05193733.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Western North America USA6153] gi|254743918|ref|ZP_05201601.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Kruger B] gi|254754303|ref|ZP_05206338.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Vollum] gi|254758006|ref|ZP_05210033.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Australia 94] gi|30258632|gb|AAP27851.1| prophage LambdaBa02, repressor protein [Bacillus phage lambda Ba03] gi|49180756|gb|AAT56132.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Sterne] gi|50083016|gb|AAT70150.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. 'Ames Ancestor'] gi|164712067|gb|EDR17605.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0488] gi|167511023|gb|EDR86412.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0193] gi|167530910|gb|EDR93597.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0442] gi|170129282|gb|EDS98146.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0389] gi|170667324|gb|EDT18083.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0465] gi|172080814|gb|EDT65895.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0174] gi|190562922|gb|EDV16888.1| prophage LambdaBa02, repressor protein [Bacillus anthracis Tsiankovskii-I] gi|227006247|gb|ACP15990.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. CDC 684] gi|229268977|gb|ACQ50614.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0248] Length = 122 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 15/126 (11%) Query: 15 VGKRIRLRRMILGMSQ--------EKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +G+RI+L R G++Q EK+ +T + YE G + L IS+VL Sbjct: 4 LGQRIKLSRKKRGLTQDALALKIKEKMDTETKVTKTTISNYETGYSSPSNETLVIISDVL 63 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + S + +F +L ++ K + +++++++ Sbjct: 64 NVSVDYLLGRSDDPELNAVQFTELRKEF------NELIDMLEKMPKEK-QDMLLDMMKAA 116 Query: 127 VSSEKK 132 V KK Sbjct: 117 VGHNKK 122 >gi|332638410|ref|ZP_08417273.1| helix-turn-helix domain-containing protein [Weissella cibaria KACC 11862] Length = 182 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 2/104 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + VG R+ R ++ +++ G++ + E+ L IS L PI Sbjct: 2 ITEIVGTRLLTLRQQRQLTLQEVSTLTGVSTASLNNIERHTTSPSIDTLWKISSGLAVPI 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 ++FF P + + + S G+ + F I Sbjct: 62 NYFFATDPVDFE--LARPADFHNIASEDAGVVVQSVFNSIASNN 103 >gi|324995252|gb|EGC27164.1| XRE family transcriptional regulator [Streptococcus sanguinis SK678] Length = 225 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RRM L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + T Sbjct: 65 TST 67 >gi|324990700|gb|EGC22636.1| XRE family transcriptional regulator [Streptococcus sanguinis SK353] gi|327458798|gb|EGF05146.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 225 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RRM L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRMELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + T Sbjct: 65 TST 67 >gi|310826605|ref|YP_003958962.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308738339|gb|ADO35999.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 118 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 46/113 (40%), Gaps = 1/113 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R+R R + +SQ K+ E LG+ + +YE+G + L ++ + + + Sbjct: 2 KELGERLRRLRESVKLSQVKMAELLGVKQSSINRYEQGQSAPSLETLVRYADYFDVSLDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + + +++ + K++Q ++E++ Sbjct: 62 LLARTDNPQGKLYEHRPKIAPGSEEMKQFIEMCFDPQSPLNEKLKQTLLEMME 114 >gi|271964300|ref|YP_003338496.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270507475|gb|ACZ85753.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 164 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 13/148 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISE 64 +P+ ++G R+R R G+S + E ++ V YE+G V +L +++ Sbjct: 1 MPSEYAKSLGARLRAIRTQQGLSLHGVEEKSRGRWKAVVVGSYERGDRAVTVQKLAELAD 60 Query: 65 VLESPISFFFDV----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK--VRQK 118 P+S SP + + + + L RY I + K Sbjct: 61 FYGVPVSELLPGGAAPSPLGPTPKLVIDLERLAQLPKEKAGALARYAATIQSQRGDYNGK 120 Query: 119 IIEL----VRSIV-SSEKKYRTIEEECM 141 ++ + +RS+ +K + EE + Sbjct: 121 VLSIRQEDLRSLAVIYDKSPTELTEELI 148 >gi|229011119|ref|ZP_04168312.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] gi|228750002|gb|EEL99834.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] Length = 181 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMAKITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + D+ + I +L Sbjct: 63 SFL-LEENNTDDLIVRSHKRKKMIIDNLSYELL 94 >gi|229070774|ref|ZP_04204003.1| hypothetical protein bcere0025_29500 [Bacillus cereus F65185] gi|228712353|gb|EEL64299.1| hypothetical protein bcere0025_29500 [Bacillus cereus F65185] Length = 374 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELATYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ--------LNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + + + + ++ ++ + Sbjct: 64 LISYTPQMKQEDIKNLYHRLAEAFSEKTFDEVMIECRGIIKKYYSCFPLLLQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K I EE M Sbjct: 124 HMLTEDTDKKIEILEEAM 141 >gi|160894531|ref|ZP_02075307.1| hypothetical protein CLOL250_02083 [Clostridium sp. L2-50] gi|156863842|gb|EDO57273.1| hypothetical protein CLOL250_02083 [Clostridium sp. L2-50] Length = 118 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 11 VDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + G+R+R R GM+Q +LGE G+ + + + E G V + + P Sbjct: 7 IDKEMFGQRLREIRKKHGMTQAELGEKTGLADKYISRIETGKADVSLDCFVKLVNAFDVP 66 Query: 70 ISFFFDVS 77 ++ S Sbjct: 67 ADYYLQDS 74 >gi|91774792|ref|YP_544548.1| transcriptional regulator [Methylobacillus flagellatus KT] gi|91708779|gb|ABE48707.1| transcriptional regulator, XRE family with cupin sensor domain [Methylobacillus flagellatus KT] Length = 212 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 9/85 (10%) Query: 1 MVGNKKIPNP---------VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 M N K +P + ++G I+ R G++ ++ E I+ + K E G+ Sbjct: 1 MAENMKKTSPAGGDSEIKPLGKHLGNVIKDIRQQHGLTIAEVAERANISRGMLSKIENGL 60 Query: 52 NRVGASRLQHISEVLESPISFFFDV 76 L+ ++ L IS F Sbjct: 61 VSTSLDTLEQLANSLGVTISRLFQG 85 >gi|325567313|ref|ZP_08143980.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755] gi|325158746|gb|EGC70892.1| DNA-binding protein [Enterococcus casseliflavus ATCC 12755] Length = 284 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 41/110 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++I +R ++Q L + L +++Q V +E+G + +L ++ +L I Sbjct: 7 RKIGQQIATKRKEKNLTQSNLADQLLVSYQAVSNWERGNSLPDIEKLPQLAAILGLSIDE 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + ++ I + ++ ++L Sbjct: 67 LLGKPAAAVQHYQAGTAQPKEIAELAPLIKPQELSALIQEEPFQESSLDL 116 >gi|321157034|emb|CBW39022.1| Putative phage repressor protein [Streptococcus phage 040922] Length = 263 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 9/138 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K++ + + I R G++Q++L + +GIT + Y K + +Q Sbjct: 1 MDEKKRM-----QIIAENITHFRKQRGITQKELAKEVGITASTMTDYMKLRSAPSFGVIQ 55 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +++ S ++ + + + +QL +I V + Sbjct: 56 KLADYFGVKKSDIDTTFKEESTNSLPDAPDSLTQQIMDKVVQLTPPNQKI----VLRTSE 111 Query: 121 ELVRSIVSSEKKYRTIEE 138 EL+ S E K + E Sbjct: 112 ELLESQNEEETKINEVSE 129 >gi|307711376|ref|ZP_07647794.1| peptidase S24-like family protein [Streptococcus mitis SK321] gi|307616794|gb|EFN95976.1| peptidase S24-like family protein [Streptococcus mitis SK321] Length = 228 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 51/118 (43%), Gaps = 26/118 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q ++ E LGI+FQ +E+GV ++ + +L+ P +F Sbjct: 5 EKLKARRKELKLTQREIAEQLGISFQAYSAWERGVKEPSKEKVVQLENILKVPKGYF--- 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 +++ R + + + ++K++ R++ E+ + Sbjct: 62 ----------------------TQIEIVRLYHSLSK-QGQEKVVLYARNLSQEEQAQK 96 >gi|262283651|ref|ZP_06061416.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260708|gb|EEY79409.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 167 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 31/81 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + D Sbjct: 61 LLLEDSDKPEIKPVLSEDEKD 81 >gi|238894195|ref|YP_002918929.1| putative repressor protein of prophage [Klebsiella pneumoniae NTUH-K2044] gi|238546511|dbj|BAH62862.1| putative repressor protein of prophage [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 241 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 32/69 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR RR L ++Q LG+ +G+ V +E G G S LQ +S L+ + D Sbjct: 29 RIRARRKELKLTQAVLGKLVGVNRVTVTGWESGDYAPGGSNLQALSAALKCSPKWLIDGI 88 Query: 78 PTVCSDISS 86 ++ S Sbjct: 89 GEPDNEEPS 97 >gi|300767756|ref|ZP_07077666.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494741|gb|EFK29899.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 183 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 11/132 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G +I+ +R SQ+ + E L ++ Q + K+E G + L +S++ Sbjct: 3 IVIGTKIKEQRQQHEWSQQTVAERLHVSRQTISKWELGKSYPDLELLVALSKLFAVSTDE 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK---IIELVRSIVSS 129 +S + + + + R I +LV ++ ++ Sbjct: 63 LLGLSRRPVQ-----RPWWQLLLRKRSRTDMTVKWYSGGQDRARVAVGIISDLVANLNTT 117 Query: 130 EKKYRTIEEECM 141 ++ + + Sbjct: 118 NEQ---PLRQLL 126 >gi|167618929|ref|ZP_02387560.1| DNA-binding protein [Burkholderia thailandensis Bt4] Length = 192 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 1/101 (0%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DVNQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVS 61 Query: 70 ISFFFDVS-PTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++ F+ ++E+ D S L+ Sbjct: 62 LASLFEGDRAASPLSRAAEQPVWKDPASGYVRRSLSPAAPS 102 >gi|150378020|ref|YP_001314615.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150032567|gb|ABR64682.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 219 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 35/77 (45%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N +++ +G +R R LG++ L + G++ + K E G + LQ +S+ L Sbjct: 28 ANNLEMAIGHEVRTYRKKLGITVADLAQATGMSIGMLSKIENGNISPSLTTLQALSKALG 87 Query: 68 SPISFFFDVSPTVCSDI 84 P++ FF S Sbjct: 88 VPLTAFFRGFEEPNSAS 104 >gi|253579354|ref|ZP_04856624.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849452|gb|EES77412.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 298 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 39/79 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I +R LGM+Q++L E LG++ + V K+E+GV S + + +L ++ Sbjct: 4 IKIGKYIAGKRKSLGMTQKQLAEKLGMSDKSVSKWERGVCLPDVSVYKELCSILGISLNE 63 Query: 73 FFDVSPTVCSDISSEENNV 91 F ++ + Sbjct: 64 FLAGEDIAQENMIQKSETN 82 >gi|229074788|ref|ZP_04207803.1| hypothetical protein bcere0024_15950 [Bacillus cereus Rock4-18] gi|229096338|ref|ZP_04227311.1| hypothetical protein bcere0020_15870 [Bacillus cereus Rock3-29] gi|229115293|ref|ZP_04244702.1| hypothetical protein bcere0017_15890 [Bacillus cereus Rock1-3] gi|228668125|gb|EEL23558.1| hypothetical protein bcere0017_15890 [Bacillus cereus Rock1-3] gi|228687298|gb|EEL41203.1| hypothetical protein bcere0020_15870 [Bacillus cereus Rock3-29] gi|228708300|gb|EEL60458.1| hypothetical protein bcere0024_15950 [Bacillus cereus Rock4-18] Length = 149 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSIGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENN 90 + + I +E Sbjct: 61 LIKGNQSFKEKIHIDEEE 78 >gi|219855102|ref|YP_002472224.1| hypothetical protein CKR_1759 [Clostridium kluyveri NBRC 12016] gi|219568826|dbj|BAH06810.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 83 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 41/79 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK IR R+ ++QE+L E GI + +YE G+ +L+ IS+ LE PIS Sbjct: 4 MKVGKNIRNIRIQKNITQEELAEITGIEQSIISRYENGIIIPPIPKLEAISKALEVPISK 63 Query: 73 FFDVSPTVCSDISSEENNV 91 ++ T SS N+ Sbjct: 64 LLELEETEIKKGSSIANSF 82 >gi|160914122|ref|ZP_02076344.1| hypothetical protein EUBDOL_00130 [Eubacterium dolichum DSM 3991] gi|158433933|gb|EDP12222.1| hypothetical protein EUBDOL_00130 [Eubacterium dolichum DSM 3991] Length = 124 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 45/124 (36%), Gaps = 16/124 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R G++Q++L + ++ + VQ E+GV L+ +VL + Sbjct: 5 KELGRRIQKARKEKGLTQQELADLSHVSLKHVQGCERGVKNPSFEVLRAFCKVLNLSLDS 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 ++ +++ R R+ ++ R++ K+ Sbjct: 65 LMNLDLPEDEQAAND----------------MRQLYLSCPPAARKVLLNSTRALTDELKE 108 Query: 133 YRTI 136 Sbjct: 109 MVQT 112 >gi|315274405|ref|ZP_07869367.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria marthii FSL S4-120] gi|313615952|gb|EFR89134.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria marthii FSL S4-120] Length = 111 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 1/107 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G++QE L E L T Q + +YE G + L ++++ + Sbjct: 3 LNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRL 62 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 FF + S + +D T + ++ +I++ R Sbjct: 63 DDFFPERSLPPVDERLVTIAAHIDDDVTDEEMRDILAYIEMKKKLHR 109 >gi|296104791|ref|YP_003614937.1| hypothetical protein ECL_04459 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059250|gb|ADF63988.1| hypothetical protein ECL_04459 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 200 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 36/112 (32%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M V + V RIR R +S ++L ++ + + EKG + L Sbjct: 8 MTEQGADIAQVSLAVANRIRNWRKEKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILC 67 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 ++ L ++ +VS + E + + G D Sbjct: 68 KLAAALGISVADIVNVSSEPLVHVIEEAAIPVLWQGEKGGRARLLAGTAGPD 119 >gi|238025796|ref|YP_002910027.1| XRE family transcriptional regulator [Burkholderia glumae BGR1] gi|237874990|gb|ACR27323.1| Transcriptional regulator, XRE family protein [Burkholderia glumae BGR1] Length = 164 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 3/99 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R+ LG+SQE+ G+ + YE A ++ V + + Sbjct: 4 IGSRLREERLRLGLSQEEFAAVGGVARRAQTNYEADERSCDAKY---LAAVAGVGVDLLY 60 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + ISS+ S L + Q+++ Sbjct: 61 VLVGVRVGPISSQSEPKSQGGSDEGERDLIESYRQLNEA 99 >gi|227877416|ref|ZP_03995484.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|227862920|gb|EEJ70371.1| transcriptional regulator [Lactobacillus crispatus JV-V01] Length = 115 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 41/116 (35%), Gaps = 6/116 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R G ++ + L + YE G + + IS + + + Sbjct: 5 GNRLKTMRENAGWTKTYVANRLHLPLTTYANYEYGKREPDINTIGAISTLFNTTNDYLMG 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVRSIVSSE 130 + + S+ ++ + + L R + D ++ + ++ + + + Sbjct: 65 KTDDPEPNPSNLSSDDLAEM-----LNNVRSYNGKPFDEHDKELLTTFLKGLYADK 115 >gi|225569026|ref|ZP_03778051.1| hypothetical protein CLOHYLEM_05105 [Clostridium hylemonae DSM 15053] gi|225161825|gb|EEG74444.1| hypothetical protein CLOHYLEM_05105 [Clostridium hylemonae DSM 15053] Length = 323 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 6/98 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K+ + ++ R G +QE++ E L ++ Q V K+E G + +L Sbjct: 1 MKEETKMGFA------ENLQFLRQKKGYTQEQIAEQLQVSRQSVSKWESGGSFPEMDKLL 54 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 +SE+ + + +E + Sbjct: 55 QLSEMFQCGMDVLVQGDARNSYVEEHDEYEKHMNEYSR 92 >gi|171910469|ref|ZP_02925939.1| Transcriptional regulator, XRE family protein [Verrucomicrobium spinosum DSM 4136] Length = 198 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/115 (12%), Positives = 37/115 (32%), Gaps = 5/115 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + ++G R++ R S E L G++ + + E+ + I++ Sbjct: 16 AISRHLGARVKQLRSDRNWSLEALAGASGVSRSMLSEIEREQANPTLAVTLRIAQAFGMS 75 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +S + S ++ + D ++ + +K +E Sbjct: 76 LSELIETPGVSSSITVIRHHDRAFHYRSDDHCRI-----RTLSPLNLEKDVEFYE 125 >gi|167757416|ref|ZP_02429543.1| hypothetical protein CLORAM_02966 [Clostridium ramosum DSM 1402] gi|167703591|gb|EDS18170.1| hypothetical protein CLORAM_02966 [Clostridium ramosum DSM 1402] Length = 129 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/123 (10%), Positives = 48/123 (39%), Gaps = 7/123 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPIS 71 + +G+RI+ R+ + +++ + LG + Q + KYE + + + +++ ++ + + Sbjct: 1 MTIGERIKNLRLKNNYTLDEIADKLGTSRQTIFKYENNIVTNIPSDKIEKLALIFNVSPA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + D + + +L + +I + + + + + Sbjct: 61 YIMGWENSQLGDYEENVEYL------KNQPELLELYKEILKNDQLAILFDKAKKLEPKDL 114 Query: 132 KYR 134 + Sbjct: 115 EQI 117 >gi|114326843|ref|YP_744000.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315017|gb|ABI61077.1| transcriptional regulator [Granulibacter bethesdensis CGDNIH1] Length = 225 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P ++ +G ++R R LG++ L ++ + K E G + LQ +S L Sbjct: 37 PASLEAAIGAKVRRLRQRLGITAADLAVEADLSAGMLSKIENGSTSPSLATLQALSRALN 96 Query: 68 SPISFFFDVSPTVCS 82 +PIS FF Sbjct: 97 TPISSFFSDFDERRD 111 >gi|53717783|ref|YP_106769.1| putative phage DNA-binding protein [Burkholderia pseudomallei K96243] gi|52208197|emb|CAH34128.1| putative phage DNA-binding protein [Burkholderia pseudomallei K96243] Length = 167 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 15/111 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R+R R +SQ E G+T + YEKG A+ L+ ++ + + Sbjct: 17 VSIGDRLREERKRTSLSQRAFAERGGVTEKTQVLYEKGERVPDAAYLEQVAA-AGIDVLY 75 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + E ++ + D K R ++ L+ Sbjct: 76 VLTGQRNASELSADE--------------EVLLAGYRSLDAKGRAGVLGLI 112 >gi|25011198|ref|NP_735593.1| hypothetical protein gbs1147 [Streptococcus agalactiae NEM316] gi|23095622|emb|CAD46806.1| unknown [Streptococcus agalactiae NEM316] Length = 65 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 29/59 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R++ R G+SQ+ L + +G+ + + +E G +R+ + +S+ + I + Sbjct: 7 NRVKELRKQAGLSQQALADQIGVMRKTISHWELGNHRISTDNAKKLSQFFQVSIDDLLE 65 >gi|332982308|ref|YP_004463749.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332699986|gb|AEE96927.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 126 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 12/121 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R M+QE+L LGI+ + YE + + +++ + + Sbjct: 4 ERLVELRKERKMTQEELANVLGISRSALSLYETDKRQPDFQTICRLADFFNVSVDYLLGR 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + C ++ N+ + D +R+ + EL ++ T Sbjct: 64 TDDRCG------------VARTTYKAGNKADFILRDPDIREALDELDYITADEKESLLTH 111 Query: 137 E 137 Sbjct: 112 L 112 >gi|332366115|gb|EGJ43871.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 225 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/111 (13%), Positives = 49/111 (44%), Gaps = 9/111 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + ++ P ++++ ++ + + + + + + Sbjct: 65 ---------TSALYTYPLLTAPHKKEVDQLASRLLERQRKVSSLTAYKVLS 106 >gi|229102450|ref|ZP_04233157.1| hypothetical protein bcere0019_16110 [Bacillus cereus Rock3-28] gi|228680935|gb|EEL35105.1| hypothetical protein bcere0019_16110 [Bacillus cereus Rock3-28] Length = 149 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSIGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDE 60 Query: 73 FFDVSPTVCSDISSEENN 90 + + I +E Sbjct: 61 LIKGNQSFKEKIHIDEEE 78 >gi|297560527|ref|YP_003679501.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844975|gb|ADH66995.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 202 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 3/79 (3%) Query: 7 IPNPVDIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + + +D VG R+R R + L GI+ + + E G R L ++ Sbjct: 1 MEHDLDQALDAVGPRLRALRKQKETTLTDLSAATGISVSTLSRLESGSRRPTLELLFPLA 60 Query: 64 EVLESPISFFFDVSPTVCS 82 + D PT Sbjct: 61 RAYGVTLDELVDAPPTGDP 79 >gi|220932927|ref|YP_002509835.1| putative prophage repressor [Halothermothrix orenii H 168] gi|219994237|gb|ACL70840.1| putative prophage repressor [Halothermothrix orenii H 168] Length = 200 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++R R ++ +LG L ++F + YE+G +L I++ + D Sbjct: 5 GQKLRKLRKEKNLTLRELGNKLNLSFSLLAMYERGERTPSLDKLLLIADFFNVSTDYLLD 64 Query: 76 VSP 78 SP Sbjct: 65 HSP 67 >gi|163939634|ref|YP_001644518.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229132657|ref|ZP_04261504.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196] gi|229166679|ref|ZP_04294429.1| Transcriptional regulator, MerR [Bacillus cereus AH621] gi|163861831|gb|ABY42890.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228616676|gb|EEK73751.1| Transcriptional regulator, MerR [Bacillus cereus AH621] gi|228650784|gb|EEL06772.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST196] Length = 181 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + D+ + I +L Sbjct: 63 SFL-LEENNTDDLIVRSHKRKKMIIDNLSYELL 94 >gi|46908504|ref|YP_014893.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|47092432|ref|ZP_00230222.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|47096032|ref|ZP_00233634.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|224499013|ref|ZP_03667362.1| DNA-binding protein [Listeria monocytogenes Finland 1988] gi|224503536|ref|ZP_03671843.1| DNA-binding protein [Listeria monocytogenes FSL R2-561] gi|258611370|ref|ZP_05231528.2| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|258612011|ref|ZP_05243634.2| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|258612332|ref|ZP_05270022.2| DNA-binding protein [Listeria monocytogenes F6900] gi|290893622|ref|ZP_06556604.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|293596277|ref|ZP_05230092.2| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|293596748|ref|ZP_05264022.2| DNA-binding protein [Listeria monocytogenes J2818] gi|293597029|ref|ZP_05266697.2| DNA-binding protein [Listeria monocytogenes HPB2262] gi|300763918|ref|ZP_07073914.1| hypothetical protein LMHG_12171 [Listeria monocytogenes FSL N1-017] gi|46881776|gb|AAT05070.1| DNA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|47015629|gb|EAL06560.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|47019209|gb|EAL09952.1| DNA-binding protein [Listeria monocytogenes str. 4b H7858] gi|258599219|gb|EEW12544.1| DNA-binding protein [Listeria monocytogenes FSL N3-165] gi|258607678|gb|EEW20286.1| DNA-binding protein [Listeria monocytogenes FSL R2-503] gi|258610937|gb|EEW23545.1| DNA-binding protein [Listeria monocytogenes F6900] gi|290556824|gb|EFD90356.1| DNA-binding protein [Listeria monocytogenes FSL J2-071] gi|293584899|gb|EFF96931.1| DNA-binding protein [Listeria monocytogenes HPB2262] gi|293592028|gb|EFG00363.1| DNA-binding protein [Listeria monocytogenes J2818] gi|293594334|gb|EFG02095.1| DNA-binding protein [Listeria monocytogenes FSL J1-194] gi|300515259|gb|EFK42310.1| hypothetical protein LMHG_12171 [Listeria monocytogenes FSL N1-017] gi|332312759|gb|EGJ25854.1| DNA-binding protein [Listeria monocytogenes str. Scott A] Length = 118 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 49/113 (43%), Gaps = 2/113 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R ++Q++L +G T + KYE +R L ++E+L + F Sbjct: 4 LEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDF 63 Query: 73 FFDV-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 D + + + + + L+L + + D++ + ++I + + Sbjct: 64 LLDDVAGLREKNSVNAFPLIGNPELEKWYLELPYTYSE-DELLMLKRIADAIE 115 >gi|328953267|ref|YP_004370601.1| Cupin 2 conserved barrel domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453591|gb|AEB09420.1| Cupin 2 conserved barrel domain protein [Desulfobacca acetoxidans DSM 11109] Length = 180 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 2/103 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R ++QE+L +T + + E+ + L+ I +VL ++ Sbjct: 1 MKIGEKLKRLRQANSLTQEELANRAYLTKGFISQLERDQTSPSIATLKDILDVLGVSLAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN--RYFIQIDDV 113 FF P +T +++ ++ D Sbjct: 61 FFRDLPQDRVVYPQSARITTSNSTTACRVEVLVPDAQNRMMDP 103 >gi|291009445|ref|ZP_06567418.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 190 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 37/115 (32%), Gaps = 7/115 (6%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R+R R G + L + GI + + E G R L I++ + Sbjct: 2 DEVLAAVGPRLRQIRRQRGCTLAALSKTTGIAVSTLSRLESGQRRPSLELLLPIAQAHQV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQI-----DDVKVR 116 P+ P + + D P Q + F I + R Sbjct: 62 PLDELVGAPPVGDPRVRLKPIRRGDMTVVPLTQQPGGLQAFKMIMGAGRSEPDPR 116 >gi|296139176|ref|YP_003646419.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027310|gb|ADG78080.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 171 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+P +VG R+R R G+S +L G+ + + E G L + L Sbjct: 1 MPSP---DVGGRLRELRSERGLSLSELARRAGVGKGSLSEIEAGGRNPTVETLYSLCGPL 57 Query: 67 ESPISFFFDVSPTVCSDI 84 + P++ SP S Sbjct: 58 DVPLTALLGESPGTDSTA 75 >gi|227512465|ref|ZP_03942514.1| hypothetical protein HMPREF0497_1587 [Lactobacillus buchneri ATCC 11577] gi|227084290|gb|EEI19602.1| hypothetical protein HMPREF0497_1587 [Lactobacillus buchneri ATCC 11577] Length = 103 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 32/94 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++R R GM+ +L +G + + +E + L I + L + I FF Sbjct: 7 GEKLRKLRKSRGMTAAELSAKMGFSQSYINHFETDRAVPNVNALGKILKYLGTDIPSFFG 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + +L + F Sbjct: 67 DELDSNKRTLLNTISQLSEEQIVLLTELLQSFSS 100 >gi|288869818|ref|ZP_05976459.2| transcriptional regulator [Methanobrevibacter smithii DSM 2374] gi|288860382|gb|EFC92680.1| transcriptional regulator [Methanobrevibacter smithii DSM 2374] Length = 186 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + N+G R++ R + ++ + E L I ++YE G + AS L I+ + Sbjct: 5 NEYNKNIGNRVKELRELSDITIQDFAEELDIDETMYKQYENGEVDIPASFLCEIANKFQV 64 Query: 69 PISFFFDVSPTVCS 82 + T + Sbjct: 65 DLGLLLTGEETRMN 78 >gi|210610577|ref|ZP_03288503.1| hypothetical protein CLONEX_00693 [Clostridium nexile DSM 1787] gi|210152436|gb|EEA83442.1| hypothetical protein CLONEX_00693 [Clostridium nexile DSM 1787] Length = 147 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 29/70 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G RIR R G SQE L E G++ + + E G + LQ I + L + Sbjct: 25 IMLGNRIREYRKERGFSQEILAEKSGVSTNTISRIEGGQMAMSVGILQRIVKALGVDANV 84 Query: 73 FFDVSPTVCS 82 VS Sbjct: 85 LLGVSTDGNE 94 >gi|229542977|ref|ZP_04432037.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229327397|gb|EEN93072.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 139 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 4/120 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G SQ +L + +G++ + + YE G + L IS+VL+ I + + Sbjct: 18 ARLKKVRAAQGYSQPELAKRVGVSDRNISNYETGYSFPSIKVLYRISQVLKVSIDYLLGL 77 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK-VRQKIIE---LVRSIVSSEKK 132 + V + +N + + + Y + + D + + +I + L+R + + K Sbjct: 78 TNHVGLKTNEAVSNPEKKLLETLSHEPDLYQMMLKDPEKMANRIYQTWNLIRELDDEDDK 137 >gi|70726855|ref|YP_253769.1| hypothetical protein SH1854 [Staphylococcus haemolyticus JCSC1435] gi|68447579|dbj|BAE05163.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 179 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 33/89 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R R ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MQIGNKLRNLRRQKNLTQEELAERTDLSKGYISQIESQHASPSMETFLNILEVLGTSPSD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 FF + E + D L Sbjct: 61 FFKEKSKEKVLYTKNERTIYDEYDRGYVL 89 >gi|327472198|gb|EGF17635.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 168 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 31/81 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + D Sbjct: 61 LLLEDSDKPEIKPVLSEDEKD 81 >gi|326388406|ref|ZP_08210002.1| XRE family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326207138|gb|EGD57959.1| XRE family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 485 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 4/108 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R LG++Q+ + E LGI+ V E+ + A L ++ + +S Sbjct: 27 LYLGPRIKRLRRELGLTQQAMAEDLGISPSYVALIERNQRPLTADLLLRLARSYKLDMSE 86 Query: 73 FF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 D S + + +++ + + F + + +R Sbjct: 87 LAADERDDYARRLSGMLKDPIFAEIDLTSLEISDIATSFPGVAEAMLR 134 >gi|260430057|ref|ZP_05784032.1| transcriptional regulator, XRE family [Citreicella sp. SE45] gi|260418980|gb|EEX12235.1| transcriptional regulator, XRE family [Citreicella sp. SE45] Length = 184 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG IR R G++ + L E G + + E+G L+ I+ + I Sbjct: 1 MNRQVGTDIRALRKSRGLTLQALAEATGRSAGWLSLIERGQAEPSIRDLEKIAALFGLTI 60 Query: 71 SFFFDVSPTVCSD 83 SFFF + + Sbjct: 61 SFFFRSAGRAERE 73 >gi|210615280|ref|ZP_03290495.1| hypothetical protein CLONEX_02711 [Clostridium nexile DSM 1787] gi|210150392|gb|EEA81401.1| hypothetical protein CLONEX_02711 [Clostridium nexile DSM 1787] Length = 252 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 33/73 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ + R M+Q+ L + L ++ + V K+E+G + + L I++VL ++ Sbjct: 10 GQFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADVLGITVTELLQ 69 Query: 76 VSPTVCSDISSEE 88 + + + Sbjct: 70 GEKLKENKTLNSD 82 >gi|169336953|ref|ZP_02620338.2| DNA-binding protein [Clostridium botulinum C str. Eklund] gi|169296221|gb|EDS78354.1| DNA-binding protein [Clostridium botulinum C str. Eklund] Length = 185 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 35/76 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R+ G++Q L ++ + + E+ + + L I E L + + Sbjct: 7 MNIGEKLKQLRIEKGLTQMDLASRCELSKGFISQVERDLTSPSIATLVDILECLGTNLKD 66 Query: 73 FFDVSPTVCSDISSEE 88 FF+ S E+ Sbjct: 67 FFNNDEEEKIVFSKED 82 >gi|168188074|ref|ZP_02622709.1| DNA-binding protein [Clostridium botulinum C str. Eklund] gi|169294075|gb|EDS76208.1| DNA-binding protein [Clostridium botulinum C str. Eklund] Length = 184 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 2/94 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK ++ R MS + + + G++ + + E+G + S L I+ L+ S F Sbjct: 8 IGKNLKTIRNKKNMSLDNVCKLTGVSKAMLGQIERGESNPTVSTLWRIATGLKISFSSFI 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 D S I +N++ I + ++L F Sbjct: 68 DESKETLKII--HQNDINPIIEDKNRMKLYPIFP 99 >gi|160914483|ref|ZP_02076698.1| hypothetical protein EUBDOL_00488 [Eubacterium dolichum DSM 3991] gi|158433641|gb|EDP11930.1| hypothetical protein EUBDOL_00488 [Eubacterium dolichum DSM 3991] Length = 251 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 33/76 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R M Q++LG+ L ++ + + K+E G++ L ++E+L+ ++ Sbjct: 9 IGHFISEMRKAKNMKQKELGDQLFVSDKTISKWENGISMPNIVLLAPLAELLDISVNELL 68 Query: 75 DVSPTVCSDISSEENN 90 ++ Sbjct: 69 KGEKLTQESVAKTREE 84 >gi|146313164|ref|YP_001178238.1| XRE family transcriptional regulator [Enterobacter sp. 638] gi|145320040|gb|ABP62187.1| transcriptional regulator, XRE family [Enterobacter sp. 638] Length = 200 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 33/89 (37%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + V + V RIR R +S ++L ++ + + EKG + L Sbjct: 8 MTESGADIAQVSLAVASRIRSWRKDKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILC 67 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEEN 89 ++ L ++ +VS + E Sbjct: 68 KLAAALGVSVADIVNVSSEPLVHVIEETA 96 >gi|186473005|ref|YP_001860347.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184195337|gb|ACC73301.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 199 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 2/113 (1%) Query: 9 NPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +DI+ + +R+R R G+S E L E G++ + E+ + A+ L ++ L Sbjct: 2 DFMDIHSLIARRVRELRDGHGLSLEALAERSGVSRSNISLIERARSSPTAAVLDKLATAL 61 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 ++ F+ S + T R + + Q + Sbjct: 62 GVTLASLFEAPAPSAQTPSPLSRAATQAVWTDPESGYVRRTLSPEQPSPLQLV 114 >gi|146297100|ref|YP_001180871.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410676|gb|ABP67680.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 211 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 6/111 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +S+ L E LG++ Q + YE G L I++ + + S Sbjct: 7 RLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIADYFGVTVDYLIGRS 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + + + + I D K+ +K+ + ++ Sbjct: 67 EYRTVEEQFSKRTKFERFVVENLP------YVISDEKIEKKVATFIEQVLE 111 >gi|325689190|gb|EGD31197.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] Length = 168 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 31/81 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + D Sbjct: 61 LLLEDSDKPEIKPVLSEDEKD 81 >gi|319757788|gb|ADV69730.1| phage repressor protein [Streptococcus suis JS14] Length = 229 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 31/58 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ +R+ +Q ++ LGI K+E G + L I+++L+ P+++F Sbjct: 4 GIRLKEKRIERKFNQSEIAYKLGINRASYSKWESGKSIPNQKNLSAIAKILDVPVTYF 61 >gi|313204771|ref|YP_004043428.1| helix-turN-helix domain protein [Paludibacter propionicigenes WB4] gi|312444087|gb|ADQ80443.1| helix-turn-helix domain protein [Paludibacter propionicigenes WB4] Length = 186 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ R G+SQE+L E GI + +Q+ E + + + I +VL+ Sbjct: 3 EIGEKIKELRRKKGLSQEELAEQAGINLRTIQRIENNESEPRGNTMHLICKVLDIHAEDI 62 Query: 74 FD 75 D Sbjct: 63 LD 64 >gi|312864220|ref|ZP_07724454.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|311100221|gb|EFQ58430.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] Length = 187 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG RI+ R+ LG S E+ G + V +EKG N L+ I+ + +P+S Sbjct: 7 KQVGARIKDIRLSLGESMEQFGARFNTSKGTVNNWEKGRNIPNRKNLKEIALISGTPVSV 66 Query: 73 FFDVS 77 S Sbjct: 67 LLKGS 71 >gi|313114612|ref|ZP_07800120.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623076|gb|EFQ06523.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 210 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G+SQ +L LG+T Q V K+E G + S + I+E+L + + + Sbjct: 7 LKQCRKKQGISQAELASKLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADYLLGLYR 66 Query: 79 TVCSDISSEENNVMDFIST 97 V + + EE + + Sbjct: 67 PVSNVSAPEERFFGSYSES 85 >gi|221201363|ref|ZP_03574402.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2M] gi|221208843|ref|ZP_03581841.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2] gi|221171299|gb|EEE03748.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2] gi|221178631|gb|EEE11039.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD2M] Length = 205 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 3/89 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R + G + + L G++ + E+ A L ++ L + Sbjct: 14 INERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDKLAAGLGISL 73 Query: 71 SFFF---DVSPTVCSDISSEENNVMDFIS 96 + F D +P +++ D S Sbjct: 74 AGLFGGDDGAPAQPLVRRAQQAEWRDPAS 102 >gi|221214075|ref|ZP_03587048.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221166252|gb|EED98725.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] Length = 205 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 3/89 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R + G + + L G++ + E+ A L ++ L + Sbjct: 14 INERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDKLAAGLGISL 73 Query: 71 SFFF---DVSPTVCSDISSEENNVMDFIS 96 + F D +P +++ D S Sbjct: 74 AGLFGGDDGAPAQPLVRRAQQAEWRDPAS 102 >gi|206560876|ref|YP_002231641.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198036918|emb|CAR52822.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 109 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 31/84 (36%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+ I +GKRI+ R SQE L + + E+G+ L +I L Sbjct: 13 PAPISIALGKRIKECRHAAEKSQETLAFEALVDRTYISAIERGIANPSIETLANICYSLN 72 Query: 68 SPISFFFDVSPTVCSDISSEENNV 91 ++ F V + E Sbjct: 73 VTLAELFGPLEGVSLKPTGERRAN 96 >gi|189349935|ref|YP_001945563.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189333957|dbj|BAG43027.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 205 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 3/89 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R + G + + L G++ + E+ A L ++ L + Sbjct: 14 INERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDKLAAGLGISL 73 Query: 71 SFFF---DVSPTVCSDISSEENNVMDFIS 96 + F D +P +++ D S Sbjct: 74 AGLFGGDDGAPAQPLVRRAQQAEWRDPAS 102 >gi|170747509|ref|YP_001753769.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170654031|gb|ACB23086.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 186 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 33/84 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I+VG R+R R G+SQ L + G+T + E L+ I + + + Sbjct: 1 MSIDVGARLRFVRARHGLSQRTLAKRAGVTNSAISLIEANRVNPSVGALKRILDGVPIGM 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF + P + + Sbjct: 61 AEFFALEPEPERKAFFAAEELTEI 84 >gi|163790911|ref|ZP_02185335.1| DNA-binding protein [Carnobacterium sp. AT7] gi|159873864|gb|EDP67944.1| DNA-binding protein [Carnobacterium sp. AT7] Length = 180 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ ++QE+L E ++ + + E+ ++ I EVL Sbjct: 1 MEIGNQIKNLRIQKNLTQEELAERTNLSKGYISQVERDLSVPSMEVFFDILEVLGCSPKD 60 Query: 73 FFDVSPTV 80 FFD Sbjct: 61 FFDEKQEE 68 >gi|154496755|ref|ZP_02035451.1| hypothetical protein BACCAP_01048 [Bacteroides capillosus ATCC 29799] gi|150274007|gb|EDN01107.1| hypothetical protein BACCAP_01048 [Bacteroides capillosus ATCC 29799] Length = 82 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 25/68 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R G++Q ++ + LG+T QK E G + L +++ + Sbjct: 15 ANLKYLRQKKGLTQGEMAKLLGVTTNHYQKIEYGKVNIPVLTLCFLADYFGVTTDYLLGR 74 Query: 77 SPTVCSDI 84 C Sbjct: 75 EEKHCDGD 82 >gi|126735122|ref|ZP_01750868.1| DNA-binding protein, putative [Roseobacter sp. CCS2] gi|126715677|gb|EBA12542.1| DNA-binding protein, putative [Roseobacter sp. CCS2] Length = 466 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 46/128 (35%), Gaps = 1/128 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L ++Q+ E LG++ + + E V + + +++ ++ Sbjct: 9 GAKLRELRGRLELTQKAFAERLGVSLPYLNQMENNNRPVSTAVVLGLAQEFGFDVTELQS 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E FI L R + + + ++L + + ++ + Sbjct: 69 GDEARLVGDMREALADPVFIGPAPALADMRLAAA-NAPALARAFLDLHAAYRQTHERLAS 127 Query: 136 IEEECMVE 143 ++E E Sbjct: 128 LDEALGRE 135 >gi|161525328|ref|YP_001580340.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160342757|gb|ABX15843.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] Length = 224 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 3/89 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R + G + + L G++ + E+ A L ++ L + Sbjct: 33 INERIARRVRELRTLRGYTLDALAARCGVSRSMISLIERAAASPTAVVLDKLAAGLGISL 92 Query: 71 SFFF---DVSPTVCSDISSEENNVMDFIS 96 + F D +P +++ D S Sbjct: 93 AGLFGGDDGAPAQPLVRRAQQAEWRDPAS 121 >gi|84501143|ref|ZP_00999378.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84391210|gb|EAQ03628.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 207 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 25/86 (29%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R + E+ G+ + K E G L+ ++ L + F Sbjct: 27 LGDRVRELRKARDWTLEQAAREAGLARSTLSKIENGQMSPTYDALRKLATGLGISVPQLF 86 Query: 75 DVSPTVCSDISSEENNVMDFISTPDG 100 ++ P Sbjct: 87 TPPKAAQVTGRRVVTPNGQGVAQPTA 112 >gi|323494354|ref|ZP_08099466.1| DNA-binding protein [Vibrio brasiliensis LMG 20546] gi|323311517|gb|EGA64669.1| DNA-binding protein [Vibrio brasiliensis LMG 20546] Length = 182 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 36/98 (36%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G R + R G+SQ +L + G+T + + E + L + + + + Sbjct: 1 MDTEIGTRFKALREKAGLSQRELAKRAGVTNGFISQIENNAVSPSVASLSKLLSKIPTSM 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + FF + + + + + +F Sbjct: 61 AEFFAIDDPQPEQFYTRKEEQPEIGQGEISYRQVGHFH 98 >gi|313889218|ref|ZP_07822872.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844772|gb|EFR32179.1| DNA-binding helix-turn-helix protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 179 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 44/109 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +IR R+ G++QE+L + +T + + E+ + L I E L + Sbjct: 1 MNIGNKIREMRIEKGLTQEELADRSELTKGFISQIERDLTSPSVDSLLDILEALGTDPGL 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 FF + E+ + L Q + ++ + +I+ Sbjct: 61 FFKREENEKIIFNEEDFFESENEELSYVLDWVVPNAQKNQMEPMRILIK 109 >gi|307322435|ref|ZP_07601790.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306891921|gb|EFN22752.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 147 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + VD V IR R G+SQ+KLG+ +G+TFQQVQKYE G +R+ AS+L Sbjct: 1 MRRSQADKDVDATV-ANIRRFRETSGISQKKLGDAIGVTFQQVQKYESGKDRISASKLVE 59 Query: 62 ISEVLESPISFFFDVSP 78 + L ++ F Sbjct: 60 TARALGCDLNSLFAGIE 76 >gi|302869253|ref|YP_003837890.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315504272|ref|YP_004083159.1| transcriptional regulator, xre family [Micromonospora sp. L5] gi|302572112|gb|ADL48314.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315410891|gb|ADU09008.1| transcriptional regulator, XRE family [Micromonospora sp. L5] Length = 81 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 31/75 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V RI + R G+S+ +L + LG+ +Q V E+G R I+ E P+ F Sbjct: 5 VHNRIAVLRAERGISRRQLADALGVHYQTVGYLERGEFRPSLHLALRIAAYFEVPVEVVF 64 Query: 75 DVSPTVCSDISSEEN 89 + P + Sbjct: 65 SIEPFPRIGDPAAAR 79 >gi|257866591|ref|ZP_05646244.1| predicted protein [Enterococcus casseliflavus EC30] gi|257872893|ref|ZP_05652546.1| predicted protein [Enterococcus casseliflavus EC10] gi|257800549|gb|EEV29577.1| predicted protein [Enterococcus casseliflavus EC30] gi|257807057|gb|EEV35879.1| predicted protein [Enterococcus casseliflavus EC10] Length = 304 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 42/110 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++I +R ++Q L + L +++Q V +E+G + +L ++ +L+ I Sbjct: 7 RKIGQQIAAKRKEKNLTQSNLADQLLVSYQAVSNWERGNSLPDIEKLPQLAAILDLSIDE 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + ++ I + ++ ++L Sbjct: 67 LLGKPAAAVQHYQAGTAQPEEIAELAPLIKPQELSALIQEEPFQETSLDL 116 >gi|228920539|ref|ZP_04083884.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839169|gb|EEM84465.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 181 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|229020729|ref|ZP_04177452.1| Transcriptional regulator [Bacillus cereus AH1273] gi|229026999|ref|ZP_04183317.1| Transcriptional regulator [Bacillus cereus AH1272] gi|229190542|ref|ZP_04317539.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228592887|gb|EEK50709.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228734316|gb|EEL84992.1| Transcriptional regulator [Bacillus cereus AH1272] gi|228740530|gb|EEL90805.1| Transcriptional regulator [Bacillus cereus AH1273] Length = 125 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 46/107 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R G + +++ + +G YE + A L ++++ ++ F Sbjct: 14 MDIGTQLKFLRNRRGWTMQEVADRIGKNDSTYSGYETNKRKPNAEVLVQLADIFDTTTDF 73 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + + ++ + DG+++ +I +V +RQ + Sbjct: 74 ILGRTENPNGLNFNVKDFLDQGRLHSDGVEITDEQAEIANVLLRQLL 120 >gi|67078040|ref|YP_245660.1| transcriptional regulator [Bacillus cereus E33L] gi|66970346|gb|AAY60322.1| transcriptional regulator [Bacillus cereus E33L] Length = 145 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++N+G +++ R SQE + +G+T Q V K+E + L +SE+ E I Sbjct: 3 NMNLGSQLKRFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTID 62 Query: 72 FFFDVSPTVCSDISS 86 S ++ Sbjct: 63 ELIKGSEDAREELDK 77 >gi|24378898|ref|NP_720853.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|290581081|ref|YP_003485473.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|24376780|gb|AAN58159.1|AE014887_7 putative transcriptional regulator [Streptococcus mutans UA159] gi|254997980|dbj|BAH88581.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 135 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 31/70 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++++ R ++QE + + + ++ Q + +E + L +S++ + + Sbjct: 1 MNIGEKLKTARQQSHLTQEAVADLILVSRQTISNWENEKSYPDIVNLIKLSDLYQISLDT 60 Query: 73 FFDVSPTVCS 82 + Sbjct: 61 LLKDDGKMIE 70 >gi|332828460|gb|EGK01165.1| hypothetical protein HMPREF9455_00205 [Dysgonomonas gadei ATCC BAA-286] Length = 184 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 11 VDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +DI +G+R++ R L M+QE+ I ++ KYE G + S L+ I+ Sbjct: 3 IDIKEIGQRLKGLREALDMTQEQFAASCNIPLEEYVKYESGEKDLTISVLKGIASAHNVD 62 Query: 70 ISFFFDVSPTVCSD 83 +S S Sbjct: 63 VSVLMFADEPRMSS 76 >gi|331090621|ref|ZP_08339472.1| hypothetical protein HMPREF9477_00115 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401061|gb|EGG80656.1| hypothetical protein HMPREF9477_00115 [Lachnospiraceae bacterium 2_1_46FAA] Length = 160 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I+ R ++QE+ L ++ Q V +E N L +S+V + + + Sbjct: 4 GEQIKSIRQKEKLTQEQFAMKLNVSRQAVSNWENNKNLPDIGMLILMSDVFQISLDYLIK 63 Query: 76 VSPTVCS 82 + + Sbjct: 64 GENEMNN 70 >gi|326385716|ref|ZP_08207345.1| hypothetical protein Y88_2773 [Novosphingobium nitrogenifigens DSM 19370] gi|326209695|gb|EGD60483.1| hypothetical protein Y88_2773 [Novosphingobium nitrogenifigens DSM 19370] Length = 135 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 3/117 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R + G+SQ +L E LGI+ + YE+G AS + + E + Sbjct: 8 IGTRIAEVRRLKGLSQVQLAEELGISKPGLANYERGFRVPPASLVADLCEKHGVSAGWLL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + + ++T L R ++ + + L + I++ E+ Sbjct: 68 LGEGAIFTPDLGQV--HQRALATAWAY-LTRGGDEVQQEHLIRLSTALFQYILAHEQ 121 >gi|320528015|ref|ZP_08029181.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320131641|gb|EFW24205.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 229 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 33/83 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D K ++ R +SQ +L + LG+ + + YE G L+ I++ + Sbjct: 1 MDRKFSKSLKSLREEHHLSQRQLADALGVAYSTIGMYESGQREPNYETLEIIADFFNVDM 60 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 ++ S S S +D Sbjct: 61 NYLLGKSIIKNSYASELTEIPLD 83 >gi|228907521|ref|ZP_04071378.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] gi|228852013|gb|EEM96810.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] Length = 181 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 38/97 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDFS 99 >gi|254515458|ref|ZP_05127518.1| conserved domain protein [gamma proteobacterium NOR5-3] gi|219675180|gb|EED31546.1| conserved domain protein [gamma proteobacterium NOR5-3] Length = 394 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG+R+ R G+S + +G+ + +YE G S + ++E L Sbjct: 2 SAVSSFVGERLTQARKARGVSAGDFADMVGLDRVTISRYETGKMDPKPSTIYKMAEALNF 61 Query: 69 PISFF 73 P +F Sbjct: 62 PTGYF 66 >gi|254302178|ref|ZP_04969536.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322370|gb|EDK87620.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 184 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 38/85 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R GMS +L + ++ + + E+G L+ I+ L+ +++ Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + +I + + +I + Sbjct: 61 LIEDEEDDIRNIEHIKKENIRYIES 85 >gi|75763251|ref|ZP_00743006.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218896766|ref|YP_002445177.1| DNA-binding protein [Bacillus cereus G9842] gi|228900413|ref|ZP_04064641.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|228938947|ref|ZP_04101547.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228952211|ref|ZP_04114302.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228958114|ref|ZP_04119849.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228969645|ref|ZP_04130433.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228971829|ref|ZP_04132450.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978437|ref|ZP_04138814.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|229069382|ref|ZP_04202672.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|229079014|ref|ZP_04211566.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|229109288|ref|ZP_04238887.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|229144444|ref|ZP_04272849.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|229178237|ref|ZP_04305608.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|296502428|ref|YP_003664128.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|74489263|gb|EAO52724.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218543988|gb|ACK96382.1| DNA-binding protein [Bacillus cereus G9842] gi|228605367|gb|EEK62817.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|228639075|gb|EEK95500.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|228674298|gb|EEL29543.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|228704428|gb|EEL56862.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228713869|gb|EEL65754.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|228781454|gb|EEM29655.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|228787919|gb|EEM35877.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228790054|gb|EEM37848.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228801631|gb|EEM48513.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228807482|gb|EEM54010.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228820796|gb|EEM66821.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228859211|gb|EEN03643.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|296323480|gb|ADH06408.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|326939449|gb|AEA15345.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 181 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|332798059|ref|YP_004459558.1| Cupin 2 barrel domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695794|gb|AEE90251.1| Cupin 2 conserved barrel domain protein [Tepidanaerobacter sp. Re1] Length = 190 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 59/120 (49%), Gaps = 6/120 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R G++ ++LG+ ++ + + E+G + V + L+ I+ LE+ +++FF Sbjct: 9 IGNKIRELRNNKGLTLKELGKKTDLSISFLSQVERGTSAVSITALEKIAHALETELAYFF 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + E + + ++ +R + ++ + + + ++ ++ ++K+ + Sbjct: 69 TL------PQKHENLIMRSYEQEVFSVEESRVYNRLTNDTNGKVLESMLITLFPNQKENK 122 >gi|198283913|ref|YP_002220234.1| XRE family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666348|ref|YP_002426547.1| DNA-binding protein, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248434|gb|ACH84027.1| transcriptional regulator, XRE family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518561|gb|ACK79147.1| DNA-binding protein, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 181 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 35/100 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+IR R G S L I+ + + E G N + L+ I L+ PI+ FD Sbjct: 6 KKIRQLREDRGWSVRGLAARAEISPSALSQIEAGQNSPSIATLEKICAALQIPIAAIFDD 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 T + F S L + K++ Sbjct: 66 GETAGLPWIMRSGDRRKFYSAGSHASLEPLARGLPQKKMQ 105 >gi|126699511|ref|YP_001088408.1| putative phage repressor [Clostridium difficile 630] gi|255101028|ref|ZP_05330005.1| putative phage repressor [Clostridium difficile QCD-63q42] gi|115250948|emb|CAJ68776.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 169 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + I+ R G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 1 MLSENIKTIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTL 60 Query: 74 FDV 76 Sbjct: 61 LGE 63 >gi|194466453|ref|ZP_03072440.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194453489|gb|EDX42386.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 220 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 9/111 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV N + +++ R G +Q +L + L ++ Q + +E G LQ Sbjct: 1 MVENT---------IASQLKRLRKSRGWTQTQLADKLSVSKQTISNWETGTKVPRMGSLQ 51 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 +++++ I + S S N++ + +I Sbjct: 52 NLADLFHVKIGEITNASIIKEETQSHLPTNIIYPLGDDFERISIPLIGEIA 102 >gi|89890100|ref|ZP_01201611.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] gi|89518373|gb|EAS21029.1| conserved hypothetical protein [Flavobacteria bacterium BBFL7] Length = 193 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 29/61 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R+ GMSQE+L ++ + +Q+ E N LQ I E + I Sbjct: 7 VGTKIKEIRLKKGMSQEELATQSQVSLRTIQRIENNENEPRGKTLQLICETCDINIEELL 66 Query: 75 D 75 D Sbjct: 67 D 67 >gi|29377137|ref|NP_816291.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|227519665|ref|ZP_03949714.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227554145|ref|ZP_03984192.1| transcriptional regulator [Enterococcus faecalis HH22] gi|229549226|ref|ZP_04437951.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255971941|ref|ZP_05422527.1| cro/CI family transcriptional regulator [Enterococcus faecalis T1] gi|256616839|ref|ZP_05473685.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256763285|ref|ZP_05503865.1| hypothetical protein EFCG_01220 [Enterococcus faecalis T3] gi|256853958|ref|ZP_05559323.1| transcriptional regulator [Enterococcus faecalis T8] gi|256957887|ref|ZP_05562058.1| helix-turn-helix domain-containing protein [Enterococcus faecalis DS5] gi|256961092|ref|ZP_05565263.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis Merz96] gi|257079824|ref|ZP_05574185.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis JH1] gi|257081830|ref|ZP_05576191.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|257084372|ref|ZP_05578733.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|257087629|ref|ZP_05581990.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis D6] gi|257090791|ref|ZP_05585152.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|257416836|ref|ZP_05593830.1| helix-turn-helix domain-containing protein [Enterococcus faecalis AR01/DG] gi|257420051|ref|ZP_05597045.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|293384038|ref|ZP_06629932.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293386851|ref|ZP_06631421.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|294779476|ref|ZP_06744872.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|300861098|ref|ZP_07107185.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|307270635|ref|ZP_07551926.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307276897|ref|ZP_07558007.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307290339|ref|ZP_07570254.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312900023|ref|ZP_07759340.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|312902423|ref|ZP_07761629.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|312908012|ref|ZP_07766995.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312953680|ref|ZP_07772517.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|312978460|ref|ZP_07790198.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|29344603|gb|AAO82361.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|227072889|gb|EEI10852.1| transcriptional regulator [Enterococcus faecalis TX0104] gi|227176771|gb|EEI57743.1| transcriptional regulator [Enterococcus faecalis HH22] gi|229305463|gb|EEN71459.1| transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|255962959|gb|EET95435.1| cro/CI family transcriptional regulator [Enterococcus faecalis T1] gi|256596366|gb|EEU15542.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256684536|gb|EEU24231.1| hypothetical protein EFCG_01220 [Enterococcus faecalis T3] gi|256710901|gb|EEU25944.1| transcriptional regulator [Enterococcus faecalis T8] gi|256948383|gb|EEU65015.1| helix-turn-helix domain-containing protein [Enterococcus faecalis DS5] gi|256951588|gb|EEU68220.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis Merz96] gi|256987854|gb|EEU75156.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis JH1] gi|256989860|gb|EEU77162.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|256992402|gb|EEU79704.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|256995659|gb|EEU82961.1| helix-turn-helix domain-containing protein:Cupin region [Enterococcus faecalis D6] gi|256999603|gb|EEU86123.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|257158664|gb|EEU88624.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ARO1/DG] gi|257161879|gb|EEU91839.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|291078518|gb|EFE15882.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291083685|gb|EFE20648.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|294453433|gb|EFG21839.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|295113617|emb|CBL32254.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] gi|300850137|gb|EFK77887.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|306498532|gb|EFM68034.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306506320|gb|EFM75480.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306512945|gb|EFM81586.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310626103|gb|EFQ09386.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|310628518|gb|EFQ11801.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310634093|gb|EFQ17376.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|311288609|gb|EFQ67165.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|311292780|gb|EFQ71336.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|315025573|gb|EFT37505.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315030296|gb|EFT42228.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315032780|gb|EFT44712.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315035163|gb|EFT47095.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315143822|gb|EFT87838.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315148623|gb|EFT92639.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315149967|gb|EFT93983.1| helix-turn-helix protein [Enterococcus faecalis TX0012] gi|315151947|gb|EFT95963.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315159172|gb|EFU03189.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315162150|gb|EFU06167.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315168640|gb|EFU12657.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315170416|gb|EFU14433.1| helix-turn-helix protein [Enterococcus faecalis TX1342] gi|315173738|gb|EFU17755.1| helix-turn-helix protein [Enterococcus faecalis TX1346] gi|315576252|gb|EFU88443.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315579167|gb|EFU91358.1| helix-turn-helix protein [Enterococcus faecalis TX0630] gi|315582897|gb|EFU95088.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|323481583|gb|ADX81022.1| helix-turn-helix/ cupin_2 family protein [Enterococcus faecalis 62] gi|327535878|gb|AEA94712.1| cro/CI family transcriptional regulator [Enterococcus faecalis OG1RF] Length = 180 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 36/77 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ 60 Query: 73 FFDVSPTVCSDISSEEN 89 FF P + +EE Sbjct: 61 FFSQQPLEQKIVYNEEE 77 >gi|116494736|ref|YP_806470.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|239631670|ref|ZP_04674701.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066285|ref|YP_003788308.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|116104886|gb|ABJ70028.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] gi|239526135|gb|EEQ65136.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438692|gb|ADK18458.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 185 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R G+SQ L E +GI+ Q + KYE G+ ++ + ++L + Sbjct: 3 GERLTQLRKQKGLSQNDLAEAIGISRQAISKYENGLAEPDLDKIAKLRDILGVSYADLLG 62 Query: 76 VSP 78 P Sbjct: 63 KEP 65 >gi|322377260|ref|ZP_08051752.1| prophage Sa05, DNA-binding protein [Streptococcus sp. M334] gi|321281973|gb|EFX58981.1| prophage Sa05, DNA-binding protein [Streptococcus sp. M334] Length = 194 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 38/81 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +SQ+++ + + I+ + + ++E G +++ + Q +++ I + Sbjct: 2 NRLKELRKEKKLSQKEIAKEMSISEKTLSRWENGESQIKPEKAQMLADFFGVHIGYLLGY 61 Query: 77 SPTVCSDISSEENNVMDFIST 97 S + + + + ++ S Sbjct: 62 SLSRDNMLVALAPYTIEEDSD 82 >gi|319939951|ref|ZP_08014306.1| serine hydroxymethyltransferase [Streptococcus anginosus 1_2_62CV] gi|319810962|gb|EFW07281.1| serine hydroxymethyltransferase [Streptococcus anginosus 1_2_62CV] Length = 290 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 1/100 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ +R+ LG+SQ++L E + Q+ + EKG G+ L +S+ + P+++FFD S Sbjct: 8 RLKSKRLELGVSQKELAEGV-CEQGQISRMEKGKYMPGSDLLYSLSKKMNVPMNYFFDDS 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + +++ +Y ++ K + Sbjct: 67 VLGETSKLVQFKELVESFLVKREYDSLKYLYSLEIDKQHR 106 >gi|317407356|gb|EFV87322.1| XRE family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 63 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 22/60 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R G SQ L E L ++ Q V E G I+ V PI F Sbjct: 3 NRIRDLRAERGWSQAALAEQLNVSRQTVNAIETGRYDPSLPLAFAIARVFGQPIEAIFQE 62 >gi|303238242|ref|ZP_07324778.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302594288|gb|EFL64000.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 67 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R G +Q+ L + + ++ Q + E G I++V + I F Sbjct: 3 NKIKDLREQSGFTQQYLADKVNVSRQTIISLENGKYNPSIFLAYKIAKVFKMTIEDIFVF 62 Query: 77 SPT 79 Sbjct: 63 EEE 65 >gi|257870572|ref|ZP_05650225.1| predicted protein [Enterococcus gallinarum EG2] gi|257804736|gb|EEV33558.1| predicted protein [Enterococcus gallinarum EG2] Length = 275 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 45/115 (39%), Gaps = 3/115 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI +R L M+Q L + L +++Q + +E+G +L ++ +L+ I Sbjct: 7 RQIGQRIASKRRELNMTQSNLADQLLVSYQAISNWERGNTLPDIEKLPQLATILQLSIDE 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 S + + + ++ + + + +ELV + Sbjct: 67 LLGNSGVAVMHYHEGVADSQEITTLAPIIKP-KELAAATQAQPFE--LELVEQLA 118 >gi|125719034|ref|YP_001036167.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|125498951|gb|ABN45617.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] Length = 168 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLANKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDY 60 Query: 73 FFDVSPTVCS 82 Sbjct: 61 LLLEDSDKPE 70 >gi|76817873|ref|YP_337176.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1710b] gi|217424647|ref|ZP_03456145.1| transcriptional regulator PuuR [Burkholderia pseudomallei 576] gi|254185399|ref|ZP_04891987.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1655] gi|254187284|ref|ZP_04893798.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei Pasteur 52237] gi|76582346|gb|ABA51820.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1710b] gi|157934966|gb|EDO90636.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei Pasteur 52237] gi|184209634|gb|EDU06677.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1655] gi|217392571|gb|EEC32595.1| transcriptional regulator PuuR [Burkholderia pseudomallei 576] Length = 189 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 4/104 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + N V R+R RM G+SQ +L + G+T + E+ L+ Sbjct: 1 MPESLSMSN----EVATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLK 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + E + ++ FF + S + + + G L Sbjct: 57 KLLECIPMSLAEFFTFEIDENRSVVSRRGEMPNLGNETIGFYLA 100 >gi|78221357|ref|YP_383104.1| putative prophage repressor [Geobacter metallireducens GS-15] gi|78192612|gb|ABB30379.1| putative prophage repressor [Geobacter metallireducens GS-15] Length = 216 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 40/110 (36%), Gaps = 9/110 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI+ R+ G++Q++ + LGI + E+ + L + + E S+ Sbjct: 13 GRRIKEIRINKGLTQKEFADSLGIVQGFLSGIEREKKTPSDTLLIALCNLYEISPSWLAS 72 Query: 76 VS------PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 P ++ + G + ++ + +R ++ Sbjct: 73 GEGEMYRTPRRAGQPATSPGGEGIPLLERIGPEFP---HRVGEDDIRDRV 119 >gi|16804372|ref|NP_465857.1| hypothetical protein lmo2334 [Listeria monocytogenes EGD-e] gi|217963568|ref|YP_002349246.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|226224879|ref|YP_002758986.1| transcriptional regulator [Listeria monocytogenes Clip81459] gi|254831241|ref|ZP_05235896.1| DNA-binding protein [Listeria monocytogenes 10403S] gi|254901140|ref|ZP_05261064.1| DNA-binding protein [Listeria monocytogenes J0161] gi|254992018|ref|ZP_05274208.1| DNA-binding protein [Listeria monocytogenes FSL J2-064] gi|255022554|ref|ZP_05294540.1| DNA-binding protein [Listeria monocytogenes FSL J1-208] gi|255025516|ref|ZP_05297502.1| DNA-binding protein [Listeria monocytogenes FSL J2-003] gi|255519749|ref|ZP_05386986.1| DNA-binding protein [Listeria monocytogenes FSL J1-175] gi|284802775|ref|YP_003414640.1| hypothetical protein LM5578_2532 [Listeria monocytogenes 08-5578] gi|284995917|ref|YP_003417685.1| hypothetical protein LM5923_2482 [Listeria monocytogenes 08-5923] gi|16411822|emb|CAD00412.1| lmo2334 [Listeria monocytogenes EGD-e] gi|217332838|gb|ACK38632.1| DNA-binding protein [Listeria monocytogenes HCC23] gi|225877341|emb|CAS06055.1| Putative transcriptional regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|284058337|gb|ADB69278.1| hypothetical protein LM5578_2532 [Listeria monocytogenes 08-5578] gi|284061384|gb|ADB72323.1| hypothetical protein LM5923_2482 [Listeria monocytogenes 08-5923] gi|307571856|emb|CAR85035.1| HTH-type transcriptional regulator, putative [Listeria monocytogenes L99] gi|328465370|gb|EGF36617.1| DNA-binding protein [Listeria monocytogenes 1816] Length = 115 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 49/113 (43%), Gaps = 2/113 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R ++Q++L +G T + KYE +R L ++E+L + F Sbjct: 1 MEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDF 60 Query: 73 FFDV-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 D + + + + + L+L + + D++ + ++I + + Sbjct: 61 LLDDVAGLREKNSVNAFPLIGNPELEKWYLELPYTYSE-DELLMLKRIADAIE 112 >gi|307708176|ref|ZP_07644643.1| transcriptional regulator [Streptococcus mitis NCTC 12261] gi|307615622|gb|EFN94828.1| transcriptional regulator [Streptococcus mitis NCTC 12261] Length = 228 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 53/118 (44%), Gaps = 26/118 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + +L+ P +F Sbjct: 5 EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGIKEPSKEKVFQLENILKVPKGYF--- 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 +++ R + + + ++K++ R++ E+ ++ Sbjct: 62 ----------------------TQIEIVRLYHSLSK-QGQEKVVLYARNLSQEEQAHK 96 >gi|300702647|ref|YP_003744247.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299070308|emb|CBJ41600.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 113 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+ +G+RI+ R SQE L + + E+G+ L ++ L Sbjct: 17 PAPILTALGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSIETLANLCYALN 76 Query: 68 SPISFFFDVSP 78 ++ F Sbjct: 77 VTLAELFGPLD 87 >gi|260161768|emb|CAZ39312.1| hypothetical protein [Streptococcus suis] gi|313575350|emb|CBR26879.1| hypothetical protein [Streptococcus phage phi-SsUD.1] Length = 80 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R+R RR +S ++ L I +E G + L ++ +L+ P+++F Sbjct: 4 GLRLRERREKQNLSHVEIANILEINRSSYNSWESGRAKPNQKNLTALAAILDVPVTYF 61 >gi|228994924|ref|ZP_04154702.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] gi|228764826|gb|EEM13602.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] Length = 115 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 30/72 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I+ R G++QE+L + G++ Q++ +E + L+ ++ + I Sbjct: 5 VGQNIKNFRKSFGLTQEQLSDRTGLSRGQIKNWEVDRHEPDLESLKVLASFFNTSIDRLL 64 Query: 75 DVSPTVCSDISS 86 + Sbjct: 65 SFKNEKEDALLE 76 >gi|148807463|gb|ABR13534.1| phage-related DNA-binding protein [Pseudomonas aeruginosa] Length = 400 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R++ R G++QE L E +G + + K+E G + A I E S+ + Sbjct: 11 ERLKQLRSASGLTQEGLAELIGCSAGNISKWETGSSYPTAPSFHKICEFFGVSESWLLE 69 >gi|118580325|ref|YP_901575.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118503035|gb|ABK99517.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM 2379] Length = 107 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 2/97 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R GM+QE+L E LGI + + + E G + RL I+ V+ +P+ F Sbjct: 8 LGLRIRELRKRAGMTQEQLAELLGIDQKHMSRIELGKSYPSLDRLLKIAVVVNAPLPNLF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + + + V++ + L R + ++ Sbjct: 68 EF--GHMNTAADLQQQVVNIVMQLGPKDLKRIYRILE 102 >gi|59712644|ref|YP_205420.1| Cro/Cl family transcriptional regulator [Vibrio fischeri ES114] gi|59480745|gb|AAW86532.1| transcriptional repressor, Cro/CI family [Vibrio fischeri ES114] Length = 215 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 33/85 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R ++Q + + G++ V +E+ N+ L ++ L+ +++ Sbjct: 5 GSRLFHLRKARKLTQSSIAKASGVSRSSVTLWEQDTNKPKGESLMALASFLKCDVNWLLT 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDG 100 + +E V+ P G Sbjct: 65 GQGSPEPAKQEQETTVVSVALKPQG 89 >gi|301310632|ref|ZP_07216571.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 20_3] gi|300832206|gb|EFK62837.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 20_3] Length = 138 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 57/129 (44%), Gaps = 10/129 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R G+ QE L + +G++ + YEK + + L+ I++ L+ P + Sbjct: 20 GANLKRWREWRGIKQEVLADKIGVSQATLSGYEK-KDELEPEVLEKITKALDIPTEAITE 78 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 ++ +I S +T G N+ F I KI+EL ++ +E++ Sbjct: 79 LNEGALINIYSGT---WQDNATAAGSIQNQTFNPI------DKIVELYERLLKAEQEKVA 129 Query: 136 IEEECMVEQ 144 + E + ++ Sbjct: 130 MLHEIIKDK 138 >gi|289450287|ref|YP_003474554.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184834|gb|ADC91259.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 243 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 1/74 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P+ + +G IR R L ++Q LG + V KYE G + L Sbjct: 1 MTNLGANPD-ISPIIGDNIRFFRKRLKLTQSDLGSLINKGKATVAKYESGQIILDVQTLY 59 Query: 61 HISEVLESPISFFF 74 I+ L + Sbjct: 60 EIARALGVNLEQLL 73 >gi|228945433|ref|ZP_04107787.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814236|gb|EEM60503.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 181 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMAYITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|167755494|ref|ZP_02427621.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402] gi|237733722|ref|ZP_04564203.1| predicted protein [Mollicutes bacterium D7] gi|167704433|gb|EDS19012.1| hypothetical protein CLORAM_01008 [Clostridium ramosum DSM 1402] gi|229383320|gb|EEO33411.1| predicted protein [Coprobacillus sp. D7] Length = 287 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 32/79 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I + R+ R +SQE L LGI+ Q V K+E+ L ++++ + Sbjct: 13 MNIEIANRLVRLRKEKNLSQEALANELGISRQAVSKWERAEASPDTDNLILLAKLYGMSL 72 Query: 71 SFFFDVSPTVCSDISSEEN 89 ++++ Sbjct: 73 DDLLKTDQKEFESGNNQQA 91 >gi|157149913|ref|YP_001449951.1| putative transcriptional repressor [Streptococcus gordonii str. Challis substr. CH1] gi|157074707|gb|ABV09390.1| putative transcriptional repressor [Streptococcus gordonii str. Challis substr. CH1] Length = 225 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 49/106 (46%), Gaps = 11/106 (10%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + ++ P ++++ ++ + + +KI L Sbjct: 65 ---------TSALYTYPLLTLPHKKEVDQLASRLLERQ--RKISSL 99 >gi|15922405|ref|NP_378074.1| transcriptional regulator [Sulfolobus tokodaii str. 7] gi|15623194|dbj|BAB67183.1| 515aa long hypothetical transcriptional regulator [Sulfolobus tokodaii str. 7] Length = 515 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 24/63 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R G+S +L + GI+ + + E G S L I+ L Sbjct: 5 IGKRITEIREKKGISVTQLAKMAGISKSTLWEIENGKISPNISTLWSIANALGVTFGELI 64 Query: 75 DVS 77 Sbjct: 65 TYD 67 >gi|296450733|ref|ZP_06892486.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296260577|gb|EFH07419.1| XRE family transcriptional regulator [Clostridium difficile NAP08] Length = 130 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 43/101 (42%), Gaps = 1/101 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+RI++ R G++QE L + ++ V E+G+ I+ LE Sbjct: 30 KAVGQRIKMAREAKGLTQEDLAAMVELSPTHVSVIERGLKAAKLDTFVAIANALEVSADS 89 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 DV + +++E + ++ + + ++ + + + Sbjct: 90 LLIDVVAHSVTGVTNELSEMIGKLPKEEQKKIIKAVRALTE 130 >gi|295108006|emb|CBL21959.1| transcriptional regulator, XRE family [Ruminococcus obeum A2-162] Length = 77 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R ++Q+ +GE L + + YE G + L ++E + + + ++ Sbjct: 3 QRIRDLREDRDLTQKNMGEILNCSQRIYSNYECGDVDIPTHILIKLAEFHNTSVDYLLNL 62 Query: 77 SPTVCS 82 + Sbjct: 63 TDDKRP 68 >gi|207721971|ref|YP_002252409.1| hypothetical protein RSMK02286 [Ralstonia solanacearum MolK2] gi|207744683|ref|YP_002261075.1| hypothetical protein RSIPO_02894 [Ralstonia solanacearum IPO1609] gi|206587144|emb|CAQ17728.1| hypothetical protein RSMK02286 [Ralstonia solanacearum MolK2] gi|206596090|emb|CAQ63017.1| hypothetical protein RSIPO_02894 [Ralstonia solanacearum IPO1609] Length = 113 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+ +G+RI+ R SQE L + + E+G+ L ++ L Sbjct: 17 PAPILTALGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANLCYALN 76 Query: 68 SPISFFFDVSP 78 ++ F Sbjct: 77 VTLAELFGPLD 87 >gi|163856318|ref|YP_001630616.1| transcriptional regulator [Bordetella petrii DSM 12804] gi|163260046|emb|CAP42347.1| predicted transcriptional regulator [Bordetella petrii] Length = 219 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 10/75 (13%), Positives = 32/75 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G+++R R G+S ++ + GI+ + + E+G++ + ++ + Sbjct: 28 IDFWLGQQLRQLRKQHGLSLMQVAKACGISVGLLSQVERGLSSPSVKIVTLLAGQFGVSV 87 Query: 71 SFFFDVSPTVCSDIS 85 + + + Sbjct: 88 DSLLRGTGQGGGEAA 102 >gi|157150934|ref|YP_001450194.1| Cro/CI family transcriptional regulator putative [Streptococcus gordonii str. Challis substr. CH1] gi|262282528|ref|ZP_06060296.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|157075728|gb|ABV10411.1| transcriptional regulator, Cro/CI family, putative [Streptococcus gordonii str. Challis substr. CH1] gi|262261819|gb|EEY80517.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 136 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K I + R +SQEKL E +G++ Q + K+E G + +++ + + Sbjct: 1 MISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADYFDVSLDEL 60 Query: 74 FDVS 77 + Sbjct: 61 VHLE 64 >gi|148284913|ref|YP_001249003.1| putative transcriptional regulator [Orientia tsutsugamushi str. Boryong] gi|189183368|ref|YP_001937153.1| hypothetical protein OTT_0461 [Orientia tsutsugamushi str. Ikeda] gi|146740352|emb|CAM80780.1| putative transcriptional regulator [Orientia tsutsugamushi str. Boryong] gi|189180139|dbj|BAG39919.1| hypothetical protein OTT_0461 [Orientia tsutsugamushi str. Ikeda] Length = 79 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 44/78 (56%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + + +G RI + R+ +S+ L +G+T QQ+ KYEKG+NR+ RL Sbjct: 1 MAKHHEYIDRANRFIGNRIYMVRLEQKLSRNNLAASIGVTHQQLHKYEKGINRISIGRLM 60 Query: 61 HISEVLESPISFFFDVSP 78 I++ L + FF+D + Sbjct: 61 LIAKALNKNVDFFYDGAD 78 >gi|116490218|ref|YP_809762.1| XRE family transcriptional regulator [Oenococcus oeni PSU-1] gi|290889597|ref|ZP_06552687.1| hypothetical protein AWRIB429_0077 [Oenococcus oeni AWRIB429] gi|116090943|gb|ABJ56097.1| Transcriptional regulator, xre family [Oenococcus oeni PSU-1] gi|290480795|gb|EFD89429.1| hypothetical protein AWRIB429_0077 [Oenococcus oeni AWRIB429] Length = 178 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 33/61 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ ++ R +G++Q+++ + + +T Q V ++E+G L+ + ++ + Sbjct: 1 MSLGESLKSARNAVGLTQDQVAKKMYVTRQTVSRWEQGKTLPNIYVLRELKQLYGLSLDN 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|332361883|gb|EGJ39686.1| transcriptional regulator [Streptococcus sanguinis SK355] Length = 136 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K I + R +SQEKL E +G++ Q + K+E G + +++ + + Sbjct: 1 MISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLDEL 60 Query: 74 FDVS 77 + Sbjct: 61 VHLE 64 >gi|322805162|emb|CBZ02726.1| transcriptional regulator [Clostridium botulinum H04402 065] Length = 373 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 13/139 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I +R G++QE+L +G++ V K+E G + L ++ + Sbjct: 6 IGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGSSYPDILFLPELATYFNISVDELL 65 Query: 75 DVSPTVCSD--------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL---V 123 SP + + +S E + +L + + + II+L Sbjct: 66 GYSPQLTKEDIKKIYSKLSHEFAVKPFDEAMEQCNKLIKKYYSCFPFLL--SIIQLLLNY 123 Query: 124 RSIVSSEKKYRTIEEECMV 142 +++ ++ + I ++C++ Sbjct: 124 SNLIKNDAIKKEIFQQCIL 142 >gi|255655594|ref|ZP_05401003.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296878842|ref|ZP_06902842.1| probable transcriptional regulator [Clostridium difficile NAP07] gi|296430114|gb|EFH15961.1| probable transcriptional regulator [Clostridium difficile NAP07] Length = 403 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 57/132 (43%), Gaps = 6/132 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I+ R ++QE+L + +G++ V K+E G + L +++ I Sbjct: 3 IKIGKIIQALRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDK 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS--E 130 + + + ++ ++ I + L+ + + ++ +E V+++ + E Sbjct: 63 LLNYKIDLSEEEVTKIYKELESIFAGIEVDLSTEEPK----EECKRDLEYVKNLSNMYIE 118 Query: 131 KKYRTIEEECMV 142 K ++ + + Sbjct: 119 KYPKSYLLKLKI 130 >gi|163789807|ref|ZP_02184244.1| possible transcriptional regulator [Carnobacterium sp. AT7] gi|159875029|gb|EDP69096.1| possible transcriptional regulator [Carnobacterium sp. AT7] Length = 104 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 34/77 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ RR L M+QE++ E + ++ Q + +E G N + L ISE+ + Sbjct: 6 RLKQRRNTLKMTQEEVAEKIHVSRQTISNWENGRNLPDINSLILISEIYAISLDKLMKGD 65 Query: 78 PTVCSDISSEENNVMDF 94 P + + + F Sbjct: 66 PKMVKKLDEKIKRGKFF 82 >gi|323483984|ref|ZP_08089357.1| hypothetical protein HMPREF9474_01106 [Clostridium symbiosum WAL-14163] gi|323402700|gb|EGA95025.1| hypothetical protein HMPREF9474_01106 [Clostridium symbiosum WAL-14163] Length = 183 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+++ V K IR R +S ++L G++ + + E+G S L IS ++ Sbjct: 2 DPMNLIVAKNIRRLREENKLSMDELSRLSGVSKSMLAQIERGDGNPTISTLWKISNGMKV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 P V P I + + +G R + D + R+ Sbjct: 62 PFDAL-TVRPENLYQIVKTSE--IQPLLEDNGK--VRNYPVFPDDENRR 105 >gi|297623546|ref|YP_003704980.1| XRE family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164726|gb|ADI14437.1| transcriptional regulator, XRE family [Truepera radiovictrix DSM 17093] Length = 187 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 3/103 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G R+R R+ G + +++ E G++ + E G V A RLQ ++ V +S Sbjct: 5 HLGHRLRALRLAHGYTLQQVAERSGLSRSFLSMLENGRTNVSAVRLQKLAGVFGLGLSDL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 P G++ YF D R Sbjct: 65 LPNEGGQSGLRVLRAGEGERLAGFPPGVEATLYFR---DPHRR 104 >gi|289769326|ref|ZP_06528704.1| DNA-binding protein [Streptomyces lividans TK24] gi|289699525|gb|EFD66954.1| DNA-binding protein [Streptomyces lividans TK24] Length = 198 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V VG R+R R G++ L G++ + + E G R L ++ + Sbjct: 12 ATDDVLDAVGPRLRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLELLLPLARIY 71 Query: 67 ESPISFF 73 + P+ Sbjct: 72 DVPLDDL 78 >gi|281492863|ref|YP_003354843.1| phage Cro/CI transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281376515|gb|ADA66001.1| Phage protein, transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 203 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 2/127 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI++ R G+SQ++L + LG+T Q V YEKG L IS++L P + Sbjct: 2 ERIKIARQKKGISQKELADLLGLTQQAVSYYEKGSRIPDEHILSVISDILNVPTEYLTGE 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI--DDVKVRQKIIELVRSIVSSEKKYR 134 + E+ ++ + I DD ++ I + V ++ R Sbjct: 62 TDDPEGWDLWEDATGYTPEQIKKEIKRMKSANHIVGDDKNLQNLIGQAVSNLSGMGNTDR 121 Query: 135 TIEEECM 141 I + Sbjct: 122 GILNSLV 128 >gi|260575082|ref|ZP_05843083.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] gi|259022704|gb|EEW25999.1| transcriptional regulator, XRE family [Rhodobacter sp. SW2] Length = 207 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G + E+ G+ + K E G ++ ++E L + F Sbjct: 27 LGARVRELRKGRGWTLEQAAVKAGLARSTLSKIENGQMSPTYEAVKKLAEGLAITVPQLF 86 Query: 75 D 75 Sbjct: 87 T 87 >gi|228969787|ref|ZP_04130551.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228789939|gb|EEM37757.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] Length = 184 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 5/131 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I+ R G++ ++L E IT + + EKG+ L+ IS L+ PI Sbjct: 3 NINVGQKIKAFRKAAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALKIPIF 62 Query: 72 FFF--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 FF D++ +++ + S +L D + ++ L+ SS Sbjct: 63 NFFLEDINTEELVVRANKRRKITFPESGNVSYELL---SPNLDGSMELALMNLLPQTASS 119 Query: 130 EKKYRTIEEEC 140 I EE Sbjct: 120 IDPVAHIGEEI 130 >gi|224541245|ref|ZP_03681784.1| hypothetical protein CATMIT_00405 [Catenibacterium mitsuokai DSM 15897] gi|224525890|gb|EEF94995.1| hypothetical protein CATMIT_00405 [Catenibacterium mitsuokai DSM 15897] Length = 281 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I+ R +SQ +LG+ +G++ Q V K+E + ++ ++++ I Sbjct: 1 MTLGQTIKYYRTKFNLSQSELGDQIGVSRQAVTKWETDTGMPDINNIKSLAKLFHISIDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 V S S+ +D + D + I+ + + II+L S +K Sbjct: 61 LLSSDHHVQSLHESKIEYDIDMLKDFDINLGTLGEVTIEGYEGEKLIIQLSSSTYQDLQK 120 Query: 133 Y 133 Sbjct: 121 D 121 >gi|167755998|ref|ZP_02428125.1| hypothetical protein CLORAM_01518 [Clostridium ramosum DSM 1402] gi|167703990|gb|EDS18569.1| hypothetical protein CLORAM_01518 [Clostridium ramosum DSM 1402] Length = 291 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 34/86 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +R R G SQE+L E L ++ Q V K+E L +S++ E I Sbjct: 1 MSLSDNLRALRKQKGYSQEQLAERLNVSRQAVSKWESDNGYPEMESLIILSDLFECTIDD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 T + + + + + Sbjct: 61 LLKNDLTQHNPTAKQAYDKHYSLIAK 86 >gi|148642389|ref|YP_001272902.1| xenobiotic response element family DNA binding protein [Methanobrevibacter smithii ATCC 35061] gi|222444408|ref|ZP_03606923.1| hypothetical protein METSMIALI_00019 [Methanobrevibacter smithii DSM 2375] gi|148551406|gb|ABQ86534.1| DNA binding protein (regulator), xenobiotic response element family [Methanobrevibacter smithii ATCC 35061] gi|222433973|gb|EEE41138.1| hypothetical protein METSMIALI_00019 [Methanobrevibacter smithii DSM 2375] Length = 186 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + N+G R++ R + ++ + E L I ++YE G + AS L I+ + Sbjct: 5 NEYNKNIGNRVKELRELSDITIQDFAEELDIDETMYKQYENGEVDIPASFLCEIANKFQV 64 Query: 69 PISFFFDVSPTVCS 82 + T + Sbjct: 65 DLGLLLTGEETRMN 78 >gi|116873702|ref|YP_850483.1| DNA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742580|emb|CAK21704.1| DNA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 115 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 50/123 (40%), Gaps = 9/123 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R ++Q++L E +G T + KYE +R L ++E+L + F Sbjct: 1 MEFGEKLIHLRKKNRLTQKQLAEKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDF 60 Query: 73 FFDV-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 D + + + + + L+L + ++ + +++ I + + Sbjct: 61 LLDDVAGLREKNSVNAFPLIGNPELEKWYLELPYTYS--------EEELLMLKRIADAIE 112 Query: 132 KYR 134 + Sbjct: 113 DKK 115 >gi|21223466|ref|NP_629245.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|256785428|ref|ZP_05523859.1| DNA-binding protein [Streptomyces lividans TK24] gi|5541920|emb|CAB51134.1| hypothetical protein [Streptomyces coelicolor A3(2)] gi|14717102|emb|CAC44208.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 190 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V VG R+R R G++ L G++ + + E G R L ++ + Sbjct: 4 ATDDVLDAVGPRLRTLRRERGITLAHLSAATGVSESTLSRLESGQRRATLELLLPLARIY 63 Query: 67 ESPISFF 73 + P+ Sbjct: 64 DVPLDDL 70 >gi|328957520|ref|YP_004374906.1| putative transcriptional regulator (Xre family); skin element [Carnobacterium sp. 17-4] gi|328673844|gb|AEB29890.1| putative transcriptional regulator (Xre family); skin element [Carnobacterium sp. 17-4] Length = 166 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 30/68 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ +R L ++QE++ + + ++ + V +E G L ++++ + + Sbjct: 7 LKQKRKELKLTQEQVAQKIFVSQKSVSNWETGKTFPDIYSLIRLAQLYDLSLDNLLLEES 66 Query: 79 TVCSDISS 86 + DI Sbjct: 67 DIVEDIDK 74 >gi|306846135|ref|ZP_07478697.1| XRE family transcriptional regulator [Brucella sp. BO1] gi|306273386|gb|EFM55247.1| XRE family transcriptional regulator [Brucella sp. BO1] Length = 182 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G R+R RM +SQ +L + G+T + E + L+ I + + ++ Sbjct: 3 IDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGMAE 62 Query: 73 FFDVSPTVC 81 FF + P Sbjct: 63 FFALEPDAP 71 >gi|261253380|ref|ZP_05945953.1| DNA-binding protein [Vibrio orientalis CIP 102891] gi|260936771|gb|EEX92760.1| DNA-binding protein [Vibrio orientalis CIP 102891] Length = 182 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 10/134 (7%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G R + R G+SQ +L + G+T + + E + L + + + + Sbjct: 1 MDTAIGTRFKALREKAGLSQRELAKRAGVTNGFISQIENNAVSPSVASLSKLLSKIPTSM 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + FF + + + + + +F + I ++R + Sbjct: 61 AEFFAIDDPQPEQFYTRKEEQPEIGQGEISYRQVGHFHG-------DRHIGMLR---ETL 110 Query: 131 KKYRTIEEECMVEQ 144 K EE + + Sbjct: 111 KPDADTGEEMLTHE 124 >gi|239946011|ref|ZP_04697948.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239992479|ref|ZP_04713143.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291449463|ref|ZP_06588853.1| regulatory protein [Streptomyces roseosporus NRRL 15998] gi|291352410|gb|EFE79314.1| regulatory protein [Streptomyces roseosporus NRRL 15998] Length = 199 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G++ L GI+ + + E G R + I+ E P+ Sbjct: 18 VGPRLRRLRKDRGVTLAALSAATGISVSTLSRLESGGRRPSLELMLPIARAHEVPLDDLV 77 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDV 113 +P + ++ P + + + I + Sbjct: 78 GAAPVGDPRVRAKPIVQHGRTMLPLTARPGGLQAYKLIQEP 118 >gi|221200648|ref|ZP_03573689.1| DNA-binding protein [Burkholderia multivorans CGD2M] gi|221208477|ref|ZP_03581479.1| DNA-binding protein [Burkholderia multivorans CGD2] gi|221210397|ref|ZP_03583377.1| DNA-binding protein [Burkholderia multivorans CGD1] gi|221169353|gb|EEE01820.1| DNA-binding protein [Burkholderia multivorans CGD1] gi|221171665|gb|EEE04110.1| DNA-binding protein [Burkholderia multivorans CGD2] gi|221179220|gb|EEE11626.1| DNA-binding protein [Burkholderia multivorans CGD2M] Length = 201 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 51/131 (38%), Gaps = 9/131 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +IR R L + ++ GI+ + + E+G+ + L I++ L + +F Sbjct: 24 ALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTSLAGIAQALGVTVQYF 83 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D S E+ F + F ++ ++ +++ ++ + +K+ Sbjct: 84 VDTPSEERSVCRGEQLRFFGFADS------ANLFARLTNLSEGRQLEAILVRMPPGQKRS 137 Query: 134 R---TIEEECM 141 EE + Sbjct: 138 EVTTHAGEEFL 148 >gi|161519811|ref|YP_001583238.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160343861|gb|ABX16946.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] Length = 193 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 51/131 (38%), Gaps = 9/131 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +IR R L + ++ GI+ + + E+G+ + L I++ L + +F Sbjct: 16 ALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSLTSLAGIAQALGVTVQYF 75 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D S E+ F + F ++ ++ +++ ++ + +K+ Sbjct: 76 VDTPSEERSVCRGEQLRFFGFADS------ANLFARLTNLSEGRQLEAILVRMPPGQKRS 129 Query: 134 R---TIEEECM 141 EE + Sbjct: 130 EVTTHAGEEFL 140 >gi|15081541|ref|NP_150054.1| transcription regulator phage-related [Clostridium perfringens str. 13] gi|15076774|dbj|BAB62499.1| probable transcription regulator phage-related [Clostridium perfringens str. 13] Length = 367 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 5/125 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R ++QE L + +G+ + YE G L +S+++ I + Sbjct: 11 ENLKEYRKKQKLTQEDLAKKIGVARSTLSYYEHGSIEPNIFVLITLSKLMNCSIDSLIGL 70 Query: 77 SPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV-RSIVSSEKKY 133 S I S + NN S + N +I +KI+E RS E Sbjct: 71 SNEKIIPIPSTDIKNNYDTKESEKTNEENNLEIQKIKQES--KKILEKAKRSFSELEMAK 128 Query: 134 RTIEE 138 + ++ Sbjct: 129 KRTDK 133 >gi|163940620|ref|YP_001645504.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862817|gb|ABY43876.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 422 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 3/99 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR RM G++Q +L + + + + E G + +S L+ +S+ L F Sbjct: 1 MEIGERIRQVRMHKGLTQGELVSEI-CSITYLSRIESGKIKPSSSFLKQVSKKLGVDCDF 59 Query: 73 FFDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQ 109 D + E D I T L L +++ Sbjct: 60 LIDGNYEEIKLTILEICNKYKKDKIITEAELSLLELYVR 98 >gi|295108419|emb|CBL22372.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 124 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 42/83 (50%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + ++IR R G+SQE L E GI ++KYE G+ + +L+ I++ LE Sbjct: 26 DMEINEKIRYFRKQRGISQELLAERTGINVNTIRKYEIGIRKPKVEQLKKIADGLEISAI 85 Query: 72 FFFDVSPTVCSDISSEENNVMDF 94 F D+ +D+ + + F Sbjct: 86 EFLDIEIENEADLIAMLKKISPF 108 >gi|295099455|emb|CBK88544.1| Predicted transcriptional regulators [Eubacterium cylindroides T2-87] Length = 124 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 45/124 (36%), Gaps = 16/124 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R G++Q++L + ++ + VQ E+GV L+ +VL + Sbjct: 5 KELGRRIQKARKEKGLTQQELADLSHVSLKHVQGCERGVKNPSFEVLRAFCKVLNLSLDS 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 ++ +++ R R+ ++ R++ K+ Sbjct: 65 LMNLDLPEDEQAAND----------------MRQLYLSCPPAARKVLLNSTRALTDELKE 108 Query: 133 YRTI 136 Sbjct: 109 MVQT 112 >gi|282902623|ref|ZP_06310516.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus C160] gi|282918060|ref|ZP_06325810.1| hypothetical protein SATG_00962 [Staphylococcus aureus subsp. aureus D139] gi|282921282|ref|ZP_06329000.1| hypothetical protein SASG_01463 [Staphylococcus aureus subsp. aureus C427] gi|283767782|ref|ZP_06340697.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|282315697|gb|EFB46081.1| hypothetical protein SASG_01463 [Staphylococcus aureus subsp. aureus C427] gi|282318345|gb|EFB48705.1| hypothetical protein SATG_00962 [Staphylococcus aureus subsp. aureus D139] gi|282597082|gb|EFC02041.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus C160] gi|283461661|gb|EFC08745.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] Length = 189 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 73 FFDVSPTVCSDI 84 + DI Sbjct: 61 LVKGTIPFVPDI 72 >gi|261819794|ref|YP_003257900.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261603807|gb|ACX86293.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 78 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 28/77 (36%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P+ + I+ R G+SQE L + G+ + E+ + + Sbjct: 1 MERKINPSRARVIFSHNIKKLRERQGLSQEALADLAGLHRTYIGSVERCERNISIDNIDR 60 Query: 62 ISEVLESPISFFFDVSP 78 I+ L S+ + Sbjct: 61 IASALCVSPSYLLESDD 77 >gi|255025294|ref|ZP_05297280.1| hypothetical protein LmonocytFSL_01392 [Listeria monocytogenes FSL J2-003] Length = 158 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 2/123 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+ R G SQ KL + LG + QV YE+G L I+E + Sbjct: 4 KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYLLGR 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 +D + + + D ++ Y + +K I + +++ Sbjct: 64 DDNNLADTIAAHIDSN--ATEEDIKEILAYIEEKRKEHANEKEINITEIASKEDEEINKF 121 Query: 137 EEE 139 +E Sbjct: 122 VDE 124 >gi|254173699|ref|ZP_04880371.1| hypothetical protein TAM4_2078 [Thermococcus sp. AM4] gi|214032391|gb|EEB73221.1| hypothetical protein TAM4_2078 [Thermococcus sp. AM4] Length = 65 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G++QE+L + LG+T Q + EKG I+ + I F Sbjct: 3 NRLRELREARGLTQEELAKALGVTRQTIIAIEKGKYDPSLRLAFKIARFFGAKIEDIF 60 >gi|167851686|ref|ZP_02477194.1| possible transcriptional regulator, XRE family protein [Burkholderia pseudomallei B7210] gi|257140690|ref|ZP_05588952.1| XRE family transcriptional regulator [Burkholderia thailandensis E264] Length = 109 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 31/84 (36%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+ I +GKRI+ R SQE L I + E+G+ L +I L Sbjct: 13 PAPISIALGKRIKQCRHEAEKSQETLAFEAHIDRTYISSIERGIANPSVETLANICYSLN 72 Query: 68 SPISFFFDVSPTVCSDISSEENNV 91 ++ F V + E Sbjct: 73 ITLAELFAPLDGVSLKPTGERRAN 96 >gi|54308994|ref|YP_130014.1| putative transcriptional regulator [Photobacterium profundum SS9] gi|46913424|emb|CAG20212.1| putative transcriptional regulator [Photobacterium profundum SS9] Length = 101 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G+SQ++LG LG+ + YEKG + + L+ I++ L P+S+F Sbjct: 10 RLKEARKAAGISQKELGIRLGMDPSSASGRMNHYEKGRHMPDIATLRRIADELGVPLSYF 69 Query: 74 FDVSPTVCS 82 F S Sbjct: 70 FCDSDNSAK 78 >gi|284097787|ref|ZP_06385776.1| prophage repressor [Candidatus Poribacteria sp. WGA-A3] gi|283830687|gb|EFC34808.1| prophage repressor [Candidatus Poribacteria sp. WGA-A3] Length = 130 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 51/124 (41%), Gaps = 1/124 (0%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 +RIR R G+SQ + + L I+ V ++E+G + + ++ +L + Sbjct: 6 ERIRSAREEAGLSQADVAKALRISASAVNQWEQGLTKNMKLNNFFALANLLGQDPRWLAT 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + ++ + + ++++ VK+R+ +++ +R + + T Sbjct: 66 GKMLSRVQEPAVISPKSEYSTLTSEEKALLHYVRRLPVKLRKTLLKFIRGLGDAHISLTT 125 Query: 136 IEEE 139 E Sbjct: 126 PAAE 129 >gi|284038170|ref|YP_003388100.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283817463|gb|ADB39301.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 67 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 7/74 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK VG+RI+ R G++Q + G+ LG++ V YE G + L+ Sbjct: 1 MTELKK-------QVGQRIKEARNQKGITQREFGKMLGVSHTTVNGYETGKQNLTLDTLE 53 Query: 61 HISEVLESPISFFF 74 ++ L F Sbjct: 54 KVAAALGMAPKSFL 67 >gi|167756126|ref|ZP_02428253.1| hypothetical protein CLORAM_01646 [Clostridium ramosum DSM 1402] gi|167704118|gb|EDS18697.1| hypothetical protein CLORAM_01646 [Clostridium ramosum DSM 1402] Length = 156 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 46/104 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +I+ R G++Q++LGE GI ++KYE +L I+ L P++ F++ Sbjct: 4 GDKIKKIRNYRGLTQKQLGELSGIHEVAIRKYELNKVMPKQEQLLKIANALNVPLNTFYE 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 DI + + + +Y ++ DD + + + Sbjct: 64 YHIDEKPDILPLLFAIDEKFPLKIQRKGTKYTLEFDDDDLNRFL 107 >gi|167749383|ref|ZP_02421510.1| hypothetical protein EUBSIR_00335 [Eubacterium siraeum DSM 15702] gi|167657664|gb|EDS01794.1| hypothetical protein EUBSIR_00335 [Eubacterium siraeum DSM 15702] gi|291556256|emb|CBL33373.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 108 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 35/88 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRI RR LG+ Q ++ E + + ++ + E G + + + VL + +F Sbjct: 7 ALGKRIAKRRKELGLKQYEVCELIDVNYKYLSNIETGRSAPSLELIMSLCSVLNTTPDYF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 + + + + + L Sbjct: 67 LLGTASAELYDNDIASKITPMTDEHKRL 94 >gi|126172576|ref|YP_001048725.1| XRE family transcriptional regulator [Shewanella baltica OS155] gi|125995781|gb|ABN59856.1| transcriptional regulator, XRE family [Shewanella baltica OS155] Length = 191 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 5/134 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R G S +K + G++ + + E+G + + L I+ + Sbjct: 4 INSYLATTLKALRNQKGWSLDKAAQETGVSKAMIGQIERGESSPTIATLWKIASGFNFSL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S F + +P + + + + +T L + + R +++ + Sbjct: 64 STFLEPTPQSQGAVFRKPDELRQQPATDGML-----VASLFPFEDRFGFEMFELTLLPNY 118 Query: 131 KKYRTIEEECMVEQ 144 ++ E + E Sbjct: 119 ERLSEPHEAGVTEH 132 >gi|331702621|ref|YP_004399580.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129964|gb|AEB74517.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 201 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G R++ R+ LG++Q+++ + + ++ Q + +E + L +S++ + Sbjct: 1 MRFGARLKTERIELGLTQKQVADTMNVSRQTISSWETENSYPDIDSLIQLSDLFHISLDV 60 Query: 73 FFDVS 77 Sbjct: 61 LLKED 65 >gi|261208879|ref|ZP_05923316.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289566920|ref|ZP_06447326.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|294616443|ref|ZP_06696230.1| transcriptional regulator, xre family [Enterococcus faecium E1636] gi|260077381|gb|EEW65101.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289161287|gb|EFD09181.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|291590694|gb|EFF22416.1| transcriptional regulator, xre family [Enterococcus faecium E1636] Length = 221 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 >gi|182680496|ref|YP_001834642.1| XRE family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182636379|gb|ACB97153.1| transcriptional regulator, XRE family [Beijerinckia indica subsp. indica ATCC 9039] Length = 477 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 47/128 (36%), Gaps = 3/128 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +IR R ++Q E LGI+ + + E + AS L +++ +S F Sbjct: 8 GTQIRRLREAHALTQGAFAERLGISPSYLNQIENNQRPLSASVLLSLAQSFSVDLSEFAQ 67 Query: 76 VSPTVCSDISSEENNVMDFIS-TPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 E F TP G L ++L + + ++ + Sbjct: 68 EDTDRLIGDLKEALADPLFSGLTPSGQDLKMIAGNASWFAH--AFLQLHTAFRRTNERMQ 125 Query: 135 TIEEECMV 142 T+++E ++ Sbjct: 126 TMDDEDIL 133 >gi|266626094|ref|ZP_06119029.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288861999|gb|EFC94297.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 102 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 39/93 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R + G+SQEK+ E +GI+ Q V K+E +R L +S + E P++ Sbjct: 4 LGKRIAYYRKLQGLSQEKVAEHIGISRQAVTKWENDNSRPNTDNLLQLSALFEIPLNELV 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 S + + + F Sbjct: 64 SSYSEDHSPEEKATRIDENGLLRNRMRIIIPIF 96 >gi|308067920|ref|YP_003869525.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305857199|gb|ADM68987.1| Transcriptional regulator [Paenibacillus polymyxa E681] Length = 122 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 6/114 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R G+ QE+L + LGIT + YEK + L ++++ I + Sbjct: 4 GSRIAELREHKGLKQEELAQSLGITRAALSHYEKNRRKPDFEILTKLADIFGVTIDYLVG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFI-----QIDDVKVRQKIIELVR 124 + + + S+ +D + D + R F + + ++ I VR Sbjct: 64 RTSHPAAILDSDVREFVDQLELSDE-DILRRFNLTIDGRTLSEEEAKRFIAFVR 116 >gi|301308447|ref|ZP_07214401.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 20_3] gi|300833917|gb|EFK64533.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 20_3] Length = 145 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 51/142 (35%), Gaps = 2/142 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++ G I + R G+ Q L + LGI+ Q++ + E V L+ Sbjct: 1 MEEISKVTKSRVHHGFNISIARNRKGLKQAALADMLGISQQRLSQLENQRV-VKDEILEK 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 +SE + + S N + D + + Q + KI+E Sbjct: 60 VSEATGVSVEDLKTI-EEPMSVYIENNNTISDSSNIGSVGDSIGEYTQTYNTNPLDKIVE 118 Query: 122 LVRSIVSSEKKYRTIEEECMVE 143 L ++ EK+ E+ + E Sbjct: 119 LYERLLKEEKERVKTLEKRIKE 140 >gi|253578955|ref|ZP_04856226.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849898|gb|EES77857.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 184 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R + Q +LG+ + ++ Q + E+G + + ++ P + Sbjct: 1 MTIGKRIKELRTEADLLQSELGKAVAVSSQVISNIERGYTKPSTELVNRCAKYFGVPADY 60 Query: 73 FFDVSPTVCSDISSEEN 89 + S +E Sbjct: 61 LLGRTTEKYSTTEQKEA 77 >gi|268592412|ref|ZP_06126633.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291312199|gb|EFE52652.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 129 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 7/99 (7%) Query: 2 VGNKKIPNPVDIN-------VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 + + K+ +D +G + R G+S L + L I+ QQ+ +YE+G+ + Sbjct: 1 MKSNKLKTSIDSFQKILTEQIGMELSHLRKEKGLSGSDLAKKLKISQQQISRYERGICSI 60 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 L I LE S FF+ ++ + N+ + Sbjct: 61 NCGMLFSILFYLEISPSAFFESVSLKINEKNPSANSFIH 99 >gi|225016323|ref|ZP_03705515.1| hypothetical protein CLOSTMETH_00226 [Clostridium methylpentosum DSM 5476] gi|224950928|gb|EEG32137.1| hypothetical protein CLOSTMETH_00226 [Clostridium methylpentosum DSM 5476] Length = 119 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 6/106 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R GMSQE+L ++ + + E+ + + HI++ L + F Sbjct: 14 LGSRIRTLRQQKGMSQEELAFKASLSAAHLGQIERALKNPTVDTVSHIADALGITVDQLF 73 Query: 75 DVS------PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 V ++ + M D L+L + F + Sbjct: 74 QFDLPKQERENVTANKILAQLADMTPGQQRDVLKLIKIFKHFREDD 119 >gi|223933764|ref|ZP_03625736.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223897568|gb|EEF63957.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 289 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ RR LG SQ++L E + Q+ + EKG GA L +++ L+ + +FFD Sbjct: 8 RLKNRRKELGWSQKELAEGV-CDQGQISRIEKGTYMPGADLLHALAKKLQVRMDYFFDEE 66 Query: 78 PTVCSDISSE 87 + Sbjct: 67 ESEIVSDLKH 76 >gi|206970891|ref|ZP_03231843.1| DNA-binding protein [Bacillus cereus AH1134] gi|229189930|ref|ZP_04316940.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|206734527|gb|EDZ51697.1| DNA-binding protein [Bacillus cereus AH1134] gi|228593604|gb|EEK51413.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 181 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|159038191|ref|YP_001537444.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157917026|gb|ABV98453.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 219 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 34/106 (32%), Gaps = 6/106 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N V VG R+R R G++ + G++ + + E G R L ++ + Sbjct: 6 NDVLDAVGPRLRALRRHRGLTLADVSTTTGVSESTLSRLEGGQRRATLELLLPLARIYNV 65 Query: 69 PISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 P+ P + +S G + F I Sbjct: 66 PLDDLVGAPRTGDPRIHLTPIRRFGMAFVPLSRRPGG--VQAFKMI 109 >gi|154496299|ref|ZP_02034995.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC 29799] gi|150274382|gb|EDN01459.1| hypothetical protein BACCAP_00587 [Bacteroides capillosus ATCC 29799] Length = 155 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 31/75 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I V +R++ R G++Q+++ + L + + YE G + L ++ + + + Sbjct: 51 IAVSRRLKKAREESGLTQKEVADKLELKKTTLSGYENGKSEPSMETLVQLANLYGVSLDY 110 Query: 73 FFDVSPTVCSDISSE 87 + T E Sbjct: 111 LMCRTDTRIEFNEEE 125 >gi|126698714|ref|YP_001087611.1| putative transcriptional regulator [Clostridium difficile 630] gi|255100133|ref|ZP_05329110.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306023|ref|ZP_05350195.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|115250151|emb|CAJ67972.1| Transcriptional regulator, RmlC-type [Clostridium difficile] Length = 183 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 9/142 (6%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PN VG+ +RL R +G+S +K + G++ + + E+G + S L IS Sbjct: 2 DNKFPN-----VGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKIS 56 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + + + I EE + ++L + + IIEL Sbjct: 57 SGFKINFTTLLNENTNTYEVIKKEEVEP--IVEQKGNMKLYPIYPFSPQRRFELFIIELE 114 Query: 124 RSIVSSEKKYRTIEEE--CMVE 143 + + + EE ++E Sbjct: 115 ENCTHVSSTHSHVLEEYVLVIE 136 >gi|21242245|ref|NP_641827.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21107669|gb|AAM36363.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 109 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 1/102 (0%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G++Q +LG+ + + +E G + L+ +++VL + + Sbjct: 7 ARLREARDRRGLTQAELGKEASLPSTTISHFESGSRKPSFDNLRRLTKVLGVSTDYLMGL 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRY-FIQIDDVKVRQ 117 + ++ +T D +++ + D + R Sbjct: 67 VDSPDDMAAASRIARHLGQATEDDIKMLEAVAKSLADTRKRD 108 >gi|16801490|ref|NP_471758.1| hypothetical protein lin2428 [Listeria innocua Clip11262] gi|289435611|ref|YP_003465483.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|16414950|emb|CAC97655.1| lin2428 [Listeria innocua Clip11262] gi|289171855|emb|CBH28401.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313617561|gb|EFR89887.1| DNA-binding protein [Listeria innocua FSL S4-378] gi|313622678|gb|EFR93041.1| DNA-binding protein [Listeria innocua FSL J1-023] gi|313632189|gb|EFR99260.1| DNA-binding protein [Listeria seeligeri FSL N1-067] gi|313636591|gb|EFS02297.1| DNA-binding protein [Listeria seeligeri FSL S4-171] Length = 115 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 49/123 (39%), Gaps = 9/123 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R ++Q++L +G T + KYE +R L ++E+L + F Sbjct: 1 MEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDF 60 Query: 73 FFDV-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 D + + + + + L+L + ++ + +++ I + + Sbjct: 61 LLDDVAGLREKNSVNAFPLIGNPELEKWYLELPYTYS--------EEELLMLKRIADAIE 112 Query: 132 KYR 134 + Sbjct: 113 NKK 115 >gi|331089018|ref|ZP_08337925.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406470|gb|EGG85983.1| hypothetical protein HMPREF1025_01508 [Lachnospiraceae bacterium 3_1_46FAA] Length = 126 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 6/113 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R G++Q+KLGE GI ++KYE G LQ I++ L+ P++ Sbjct: 6 GDMIRKYRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVNRLLA 65 Query: 76 VSPTVCSDISSEENNV------MDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++ + + D L+ + + + +++ EL Sbjct: 66 GKIISRDELKEKLSEYGLTHLVPDTEEERTVLENCKKLNETGKKEAAKRVEEL 118 >gi|317495181|ref|ZP_07953551.1| hypothetical protein HMPREF0432_00153 [Gemella moribillum M424] gi|316914603|gb|EFV36079.1| hypothetical protein HMPREF0432_00153 [Gemella moribillum M424] Length = 181 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 1/110 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R+ ++QE+LGE ++ + + E+ + +I EVL FF Sbjct: 4 IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILEVLGCAPKDFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 D + + + + T +G L + ++ ++ I+ L + Sbjct: 64 D-KESTSQKVYYSLEDQTSYEETDEGYILTWLVPESNEKEMESLILRLEK 112 >gi|311064246|ref|YP_003970971.1| hypothetical protein BBPR_0856 [Bifidobacterium bifidum PRL2010] gi|310866565|gb|ADP35934.1| Conserved hypothetical protein with helix-turn-helix motif [Bifidobacterium bifidum PRL2010] Length = 405 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+++R R+ G++ +L E G++ Q + KYEK N S L ++ L PIS+F Sbjct: 16 GEKLRKARLYRGLTLTELAEETGVSKQALSKYEKNQNEPTPSNLFALARSLNFPISYF 73 >gi|317048764|ref|YP_004116412.1| XRE family transcriptional regulator [Pantoea sp. At-9b] gi|316950381|gb|ADU69856.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 185 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 10/128 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+R+ R LG+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GRRLSQIRQELGLSQRRVAELSGLTHSAISTIEQDKVSPAVSTLQKLLKVYGLSLSEFFS 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV---SSEK 131 + + N+ ++ S LQL ID+ + + L+ S+ + Sbjct: 69 EPKQDPTPRVIVRPNDRVEIGSLGVSLQL------IDNGASERALAMLLEHYAPGSSTGE 122 Query: 132 KYRTIEEE 139 K R EE Sbjct: 123 KLRHPGEE 130 >gi|227499696|ref|ZP_03929799.1| XRE family transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227218293|gb|EEI83552.1| XRE family transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 233 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 1/98 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R + G +QE + L I YE+G N S+L+ ++ + IS Sbjct: 34 ENLKYYRKLNGYTQETIAPKLNIKTSAYGSYEQGRNEPPYSKLKMLASIYGISISEL-TG 92 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 P I +++ ++ + I D + Sbjct: 93 EPEKKEPIQNKDYITINIYGSIPAGIPIEAIEDISDTE 130 >gi|90419918|ref|ZP_01227827.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90335959|gb|EAS49707.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 472 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/143 (17%), Positives = 50/143 (34%), Gaps = 9/143 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NK I G RIR R LG++Q + E LGI+ + E+ + + Sbjct: 1 MAENK-------IFAGPRIRRIRNGLGLTQTAMAEELGISPSYLNLIERNQRPLTVQLIL 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +S+ + I +++ ++ + P +L + +I Sbjct: 54 KLSQTYDVDIGDLRGEQQGSVAELRGVFSDPLLAGELPGEQELLEIAEAAPNAAA--GVI 111 Query: 121 ELVRSIVSSEKKYRTIEEECMVE 143 +L R+ + + + E Sbjct: 112 KLYRAYREQHGRLSDLSDLLARE 134 >gi|319784783|ref|YP_004144259.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170671|gb|ADV14209.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 202 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Query: 1 MVGNK--KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M+ K + D+ VG+R+R R+ +S L G++ + + E+G++ + Sbjct: 3 MLDETAGKPKDDADVRVGRRVRALRLERNLSLADLAAKAGVSIGALSQIERGMSSLRVKV 62 Query: 59 LQHISEVLESPISFFFDVSPTVCSDI 84 + ++ L+ S +D+ Sbjct: 63 IWPLAAALDIEPSALIADGSDTANDL 88 >gi|300825209|ref|ZP_07105298.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|300522328|gb|EFK43397.1| helix-turn-helix protein [Escherichia coli MS 119-7] gi|323968639|gb|EGB64044.1| helix-turn-helix protein [Escherichia coli M863] Length = 216 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 10/97 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + +G R++ R G++Q +LG+ G+T + +EK +N G+ L Sbjct: 2 MMES----------LGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALS 51 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 +++ L + S+ + + + + Sbjct: 52 KLAQALGTTESYLLYGVSSTEPTLVQNNSGTQIPYLS 88 >gi|300856338|ref|YP_003781322.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436453|gb|ADK16220.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 128 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 27/72 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++ E L + L T + +YE + + +++ + + Sbjct: 6 QRMKELRREKNITLENLAKALNTTKSTLSRYENNLRTPNVDFINQLAKYFNVSVDYLLGN 65 Query: 77 SPTVCSDISSEE 88 S S E+ Sbjct: 66 SDDKTFPDSKED 77 >gi|293380035|ref|ZP_06626134.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus 214-1] gi|312977812|ref|ZP_07789558.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] gi|290923442|gb|EFE00346.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus 214-1] gi|310895119|gb|EFQ44187.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] Length = 115 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 41/116 (35%), Gaps = 6/116 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R G ++ + L + YE G + + IS + + + Sbjct: 5 GNRLKTMRENAGWTKTYVANRLYLPLTTYANYEYGKREPDINTIGAISTLFNTTNDYLMG 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVRSIVSSE 130 + + S+ ++ + + L R + D ++ + ++ + + + Sbjct: 65 KTDDPEPNPSNLSSDDLAEM-----LNNVRSYNGKPFDEHDKELLTTFLKGLYADK 115 >gi|228924686|ref|ZP_04087872.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229180805|ref|ZP_04308142.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] gi|229191815|ref|ZP_04318789.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228591689|gb|EEK49534.1| Transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228602642|gb|EEK60126.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] gi|228834985|gb|EEM80438.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 157 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 57/150 (38%), Gaps = 7/150 (4%) Query: 2 VGNKKIPNPV---DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 + +K+ + + + +G RI+ R ++Q++L E +G++ + + YE Sbjct: 1 MNSKRTISSIREVNDVIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDV 60 Query: 59 LQHISEVLESPISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 L +++ + P E++ LQ + + Sbjct: 61 LTKLADCFSVSADYLLGRSVTGEPNEQVTPKDEKDIAKRMEEIKKDLQGEDGLMFSGEPM 120 Query: 115 VRQKIIELVRSIVSSEKKYRTIEEECMVEQ 144 ++ + L+ ++ K+ + I ++ + ++ Sbjct: 121 SQEAVESLLDAMEYIVKQTKVINKKYVPKK 150 >gi|300778418|ref|ZP_07088276.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300503928|gb|EFK35068.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 139 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 11/141 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQ 60 + NKK I+ G+ I+ R +LG+ QE L E Q+ + V + L Sbjct: 6 MQNKK------IHQGRNIKRFREMLGIKQEALAFELGDDWNQKKISLLEQKETVESDILA 59 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++++L+ P + +I + N D S +N K++ Sbjct: 60 QVAQILKVPAEAIENFDEESAINIIANTFNNHDHSSPQFATIINNS----PSFHPLDKMV 115 Query: 121 ELVRSIVSSEKKYRTIEEECM 141 EL ++ +++ E+ + Sbjct: 116 ELYERMLKQQQEMIDKLEKLI 136 >gi|254477298|ref|ZP_05090684.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214031541|gb|EEB72376.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 437 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 10/126 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR++LG+ Q +L + I+ + E R+G L ++ VL S Sbjct: 4 DTLTGSRIRERRLMLGLRQAELARQVDISASYLNLIEHNRRRIGGKLLVDLARVLAVEPS 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + E + +L+R + + + ++K Sbjct: 64 MLTEGAEVALLSTLREAAA----ALSRPVAELDRV------DEFAGRFPGWAEVLAHAQK 113 Query: 132 KYRTIE 137 + ++E Sbjct: 114 RISSLE 119 >gi|37678457|ref|NP_933066.1| hypothetical protein VV0273 [Vibrio vulnificus YJ016] gi|37197197|dbj|BAC93037.1| hypothetical protein [Vibrio vulnificus YJ016] Length = 350 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R G+S + LGE +GI+ V+KYE + + L ++ L +F Sbjct: 1 MIGERIKRARAAAGLSMQALGEQVGISANMVKKYEHDQSMPSSGVLLKLATALSVRTEYF 60 Query: 74 F 74 F Sbjct: 61 F 61 >gi|313625620|gb|EFR95300.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria innocua FSL J1-023] Length = 111 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 1/107 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G++QE L E L T Q + +YE G + L ++++ + Sbjct: 3 LNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRL 62 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 FF + + + S +D T + ++ +I++ R Sbjct: 63 DDFFPERNLPPVDERSVTIAAHIDDDVTEEEMRDILAYIEMKKKLHR 109 >gi|239760526|gb|ACS15169.1| hypothetical protein [Campylobacter fetus subsp. venerealis NCTC 10354] gi|299469437|emb|CBH51838.1| hypothetical protein [Campylobacter fetus subsp. fetus] Length = 229 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G ++R R G++Q + G+ +GI+ +V YE + + I+E I +F Sbjct: 7 GDKLRKLRNAYGLTQSEFGDKIGISRVRVNSYENNITPLPMQVKYKIAEATGINIEYF 64 >gi|268591879|ref|ZP_06126100.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291312853|gb|EFE53306.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 82 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 38/68 (55%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+++R RR++LG S LG+ G++ QQ+ +YE+G RL + +LE ++ Sbjct: 10 NSFIGQQVRKRRLLLGWSASTLGKKSGLSQQQISRYERGTQNFTIYRLCIFANILECDLN 69 Query: 72 FFFDVSPT 79 +F Sbjct: 70 YFLGHETD 77 >gi|116334693|ref|YP_796220.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116100040|gb|ABJ65189.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 120 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 29/75 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R G+SQE+L + +T Q V K+E+G L ++ VL + Sbjct: 8 QLSQLRRQAGLSQEQLASQVFVTRQSVSKWEQGETTPDLDTLISLATVLGVSLDELVSGR 67 Query: 78 PTVCSDISSEENNVM 92 T +E Sbjct: 68 STATHQTETETTFDQ 82 >gi|194467240|ref|ZP_03073227.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454276|gb|EDX43173.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 212 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 32/93 (34%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R +Q+ + E L I+ + + +E G + L IS++ + Sbjct: 6 KMKLYRRQKEWTQQDVAERLLISRKTISSWENGRSYPDIFMLVQISDLYHVSLDDLLRED 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + + E +T + I Sbjct: 66 HEMIDNYKEEHTMNAKKDNTFTISYVINLLACI 98 >gi|166032371|ref|ZP_02235200.1| hypothetical protein DORFOR_02074 [Dorea formicigenerans ATCC 27755] gi|226324025|ref|ZP_03799543.1| hypothetical protein COPCOM_01803 [Coprococcus comes ATCC 27758] gi|166028094|gb|EDR46851.1| hypothetical protein DORFOR_02074 [Dorea formicigenerans ATCC 27755] gi|225207574|gb|EEG89928.1| hypothetical protein COPCOM_01803 [Coprococcus comes ATCC 27758] Length = 83 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 31/70 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ +RIR R ++Q+ +GE L + + YE G + L ++E + + + Sbjct: 5 KHMYQRIRDLREDRDLTQKNMGEILNCSQRIYSNYECGDVDIPTHILIKLAEFHNTSVDY 64 Query: 73 FFDVSPTVCS 82 +++ Sbjct: 65 LLNLTDDKRP 74 >gi|138896745|ref|YP_001127198.1| prophage LambdaBa04, DNA-binding protein [Geobacillus thermodenitrificans NG80-2] gi|196249440|ref|ZP_03148138.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134268258|gb|ABO68453.1| Prophage LambdaBa04, DNA-binding protein [Geobacillus thermodenitrificans NG80-2] gi|196211197|gb|EDY05958.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 137 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 44/130 (33%), Gaps = 6/130 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+ ++ R +QE+L E L ++ Q+ K+E G L+ + + F Sbjct: 3 KKLGEMLKRLRKQQRWTQEQLAEQLNVSRSQISKWENGSTLPDIQSLEKLCRLFNVSADF 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + L Y + D + E + ++ + +K Sbjct: 63 LIGSEVQRREVLREVKRLYGTTEMNEKTLTAIDYLLHNQD------MSEAMYTLANLPEK 116 Query: 133 YRTIEEECMV 142 R E ++ Sbjct: 117 KRKHVETMLI 126 >gi|83953755|ref|ZP_00962476.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83841700|gb|EAP80869.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] Length = 236 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 2/74 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G + PVD +G R+R R + E+ G+ + K E G L+ Sbjct: 45 SGETETAPPVD--LGARVRELRKARNWTLEQAANQAGLARSTLSKIENGQMSPTYEALKK 102 Query: 62 ISEVLESPISFFFD 75 ++ LE + F Sbjct: 103 LAVGLEISVPQLFT 116 >gi|95930238|ref|ZP_01312976.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] gi|95133701|gb|EAT15362.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] Length = 191 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 38/99 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+++ R+ M+ E L ++ + + E+G+ L ++ IS+F Sbjct: 6 IGKKLKKMRLNNDMTIEGLANKSQVSSNMISRIERGLTTPSVEILMKLAGAFGMSISYFV 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + + + + + + D Q+ + D Sbjct: 66 EEAEKGSTVVHTPNGSGEPIFFFEDKHQIVSLTQGLRDP 104 >gi|325971877|ref|YP_004248068.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324027115|gb|ADY13874.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 197 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G++QE+LGE + ++ + K+E G LQ ++ + + Sbjct: 5 EKLKAYRSSYGLTQEQLGEKVFVSRVTISKWETGRGLPNLGSLQQLASLFGISVDELLGS 64 Query: 77 SP 78 + Sbjct: 65 NE 66 >gi|291537327|emb|CBL10439.1| Helix-turn-helix [Roseburia intestinalis M50/1] Length = 138 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 8/123 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ RR L ++Q ++ E GI+ + E+G A+ L +SE+L+ I + Sbjct: 8 IGKRIKKRRKELHLTQTEIKEKTGISSGNMSDIERGNRLPAATTLAQLSEILDCSIDWIL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 V ++ S + D +L F +I + +++++ + + + +K + Sbjct: 68 TGKSPVSENLISPDIGEKD-------QKLLSLFHEISEED-QEELLMIAQLKYNRTQKSK 119 Query: 135 TIE 137 E Sbjct: 120 EAE 122 >gi|262282768|ref|ZP_06060536.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262262059|gb|EEY80757.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 225 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + Sbjct: 65 TSA 67 >gi|257791668|ref|YP_003182274.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317487866|ref|ZP_07946458.1| hypothetical protein HMPREF1023_00156 [Eggerthella sp. 1_3_56FAA] gi|325830662|ref|ZP_08164083.1| putative restriction-modification system control element Bcll [Eggerthella sp. HGA1] gi|257475565|gb|ACV55885.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316912992|gb|EFV34509.1| hypothetical protein HMPREF1023_00156 [Eggerthella sp. 1_3_56FAA] gi|325487408|gb|EGC89850.1| putative restriction-modification system control element Bcll [Eggerthella sp. HGA1] Length = 78 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 35/78 (44%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N + I VG RI+ R + +SQE+ +G+ + E G V L I+ Sbjct: 1 MRNILQIKVGLRIKDLRAVHDVSQERFANKIGMDRTYLASIEVGQRNVTLQNLAKIANGF 60 Query: 67 ESPISFFFDVSPTVCSDI 84 + +S FF+ P V + Sbjct: 61 DMTLSEFFEGIPRVDPNT 78 >gi|167813656|ref|ZP_02445336.1| putative phage DNA-binding protein [Burkholderia pseudomallei 91] Length = 164 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 15/111 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R+R R +SQ E G+T + YEKG A+ L+ ++ + + Sbjct: 2 VSIGDRLREERKRTSLSQRAFAERGGVTEKTQVLYEKGERVPDAAYLEQVAA-AGIDVLY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + E ++ + D K R ++ L+ Sbjct: 61 VLTGQRNASELSADE--------------EVLLAGYRSLDAKGRAGVLGLI 97 >gi|34762120|ref|ZP_00143128.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237741413|ref|ZP_04571894.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|256846585|ref|ZP_05552042.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2] gi|294784172|ref|ZP_06749473.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27] gi|27888197|gb|EAA25255.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229430945|gb|EEO41157.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|256718354|gb|EEU31910.1| transcriptional regulator [Fusobacterium sp. 3_1_36A2] gi|294488242|gb|EFG35587.1| transcriptional regulator, MerR family [Fusobacterium sp. 3_1_27] Length = 184 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 38/85 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R GMS +L + ++ + + E+G L+ I+ L+ +++ Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + +I + + +I + Sbjct: 61 LIEDEEDDIRNIEHIKKENIRYIES 85 >gi|326800444|ref|YP_004318263.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] gi|326551208|gb|ADZ79593.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] Length = 112 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 49/115 (42%), Gaps = 9/115 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+IRL R G SQE + + L I+ K E G+ + SRLQ I+++ + + Sbjct: 4 LGKKIRLLRHQNGWSQEDVAKRLDISIPAFSKIETGITDINLSRLQQIAKLFDMTVVQLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + + + + ++ ++++K+IEL + Sbjct: 64 NFNDADEQKKYNSDLEAANKKLQERNNEVI---------ELQKKVIELYEELRKL 109 >gi|310658865|ref|YP_003936586.1| transcriptional regulator [Clostridium sticklandii DSM 519] gi|308825643|emb|CBH21681.1| putative transcriptional regulator [Clostridium sticklandii] Length = 126 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 45/125 (36%), Gaps = 10/125 (8%) Query: 16 GKRIRLRRMILGMSQEKLGEC------LGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 GKR + R+ G++Q++L + T + YE L+ +E + Sbjct: 6 GKRFKSLRVEKGITQDELVKQFNEKYFYNFTKSSISMYENDKQVPEVDVLKKWAEFFQVA 65 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + S + E D L + ++ + R+ I L ++++ Sbjct: 66 LDYLLGNSDIKNPYKEAPEKTDEDI---DLWLSKTDGYKELPEED-RELISNLAKNLLEK 121 Query: 130 EKKYR 134 +K + Sbjct: 122 HRKEK 126 >gi|307276551|ref|ZP_07557669.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306506661|gb|EFM75813.1| helix-turn-helix protein [Enterococcus faecalis TX2134] Length = 270 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 11 VDI-NVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D VG RIR R L +S EK G+ + + V +E+G+N L I+EV Sbjct: 3 IDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEVGHV 62 Query: 69 PISFFFDVSPT 79 + Sbjct: 63 TNEYLLYGDQE 73 >gi|303233322|ref|ZP_07319992.1| helix-turn-helix protein [Atopobium vaginae PB189-T1-4] gi|302480567|gb|EFL43657.1| helix-turn-helix protein [Atopobium vaginae PB189-T1-4] Length = 328 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 17/115 (14%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE+L + LG++ Q V K+E + R+ +S + Sbjct: 1 MILADKILELRKQNGWSQEELADKLGVSRQSVSKWEGAQSIPDMERIIALSRLFGVSTDL 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 V + ++ VR ++I+L + Sbjct: 61 LVKDEIDVMEKNVDADEAACQ-----------------EEAGVRMRVIKLEEATA 98 >gi|302562687|ref|ZP_07315029.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302480305|gb|EFL43398.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 199 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 6/91 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++ + GI+ + + E G + + +++ + Sbjct: 14 GPRLRAVRERRGVTLTDVCCATGISPSTLSRIETGRRKPTLEVVLQLAKEYGVGLDELAG 73 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 +P S F L L RY Sbjct: 74 TAPDPRSTAP------YSFGDDKAVLPLTRY 98 >gi|294810942|ref|ZP_06769585.1| Regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|326439425|ref|ZP_08214159.1| DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294323541|gb|EFG05184.1| Regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 446 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 3/119 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ R G++Q +L E T + E G R + L+ ++ L + Sbjct: 5 VEIGRRVQRLRTERGLTQRQLAE-PSYTPAYISTLESGKVRPSETALRFLAGRLGTSYEE 63 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQ-IDDVKVRQKIIELVRSIVSS 129 P + ++T + ++ + + D + + E +++ Sbjct: 64 LTTGRPARLGTELRLGLTDAQRELATGAADEAAVHYRRLLTDAEHLDLVPEQAEALLGL 122 >gi|291526890|emb|CBK92476.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 97 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 36/71 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G RI+ R+ ++QE++ + +G++ Q+ + E G N + L ++E+L+ + Sbjct: 1 MNELLGSRIKALRIAKNLTQEQVADQIGVSRQKYARVESGTNSITLDILSKVAEILDVTV 60 Query: 71 SFFFDVSPTVC 81 V Sbjct: 61 GDITRVLDETP 71 >gi|255019083|ref|ZP_05291209.1| transcription regulator, putative [Listeria monocytogenes FSL F2-515] Length = 81 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 34/80 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 FFD Sbjct: 61 FFDEEEHNQKSNLRRTRAYF 80 >gi|229544959|ref|ZP_04433684.1| transcriptional regulator [Enterococcus faecalis TX1322] gi|307287527|ref|ZP_07567570.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|229309851|gb|EEN75838.1| transcriptional regulator [Enterococcus faecalis TX1322] gi|306501265|gb|EFM70568.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315164925|gb|EFU08942.1| helix-turn-helix protein [Enterococcus faecalis TX1302] Length = 180 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 36/77 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRIQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFSILEVLGVTPEQ 60 Query: 73 FFDVSPTVCSDISSEEN 89 FF P + +EE Sbjct: 61 FFSQQPLEQKIVYNEEE 77 >gi|229059476|ref|ZP_04196859.1| Transcriptional regulator, MerR [Bacillus cereus AH603] gi|228719842|gb|EEL71434.1| Transcriptional regulator, MerR [Bacillus cereus AH603] Length = 181 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + D+ + I +L Sbjct: 63 SFL-LEENNTDDLIVRSHKRKKMIIDNLSYELL 94 >gi|227545304|ref|ZP_03975353.1| XRE family transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|227184700|gb|EEI64771.1| XRE family transcriptional regulator [Lactobacillus reuteri CF48-3A] Length = 201 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 28/73 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++L R G +Q+ + E L I+ + + +E + L IS++ + Sbjct: 1 MKLYRYQKGWTQQDVAERLLISRKTISSWENSRSYPDIFMLVQISDLYHVSLDDLLREDH 60 Query: 79 TVCSDISSEENNV 91 + ++ E Sbjct: 61 EMINNYKEEHTMN 73 >gi|171778435|ref|ZP_02919593.1| hypothetical protein STRINF_00444 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282836|gb|EDT48260.1| hypothetical protein STRINF_00444 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 183 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 25/78 (32%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I R MSQ+ ++ Q V +E G + L IS+ + Sbjct: 5 NISELRKQYQMSQDDFANIFHVSRQTVSNWENGKSYPDVEMLVKISDYFGISVDQLIKKE 64 Query: 78 PTVCSDISSEENNVMDFI 95 +S++ + + Sbjct: 65 TIPSVAKNSDKQKKLWPM 82 >gi|222053937|ref|YP_002536299.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563226|gb|ACM19198.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 187 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 28/69 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D N+G +I+ R+ ++ + + + G + + + E + L I++ + + Sbjct: 3 DYNIGAKIKKLRLAKKLTLQAVAKETGFSPALISQIENNNVSPPIATLSKIAKFFDVKVG 62 Query: 72 FFFDVSPTV 80 FF Sbjct: 63 MFFAEDEEE 71 >gi|332637123|ref|ZP_08415986.1| putative transcriptional regulator [Weissella cibaria KACC 11862] Length = 137 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 3/98 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DI +++ R G+SQ++L + L +T Q V K+E G + +R+Q I+++L+ + Sbjct: 1 MDIVFAQQLTNLRKQKGLSQQQLADKLYMTRQAVSKWETGESSPDLNRMQEIADILDVSV 60 Query: 71 SFFFDV---SPTVCSDISSEENNVMDFISTPDGLQLNR 105 P S + + D Q +R Sbjct: 61 QVLLFGTQVEPGKTSFRDKVSEYMQQDEADKDWHQNHR 98 >gi|319936789|ref|ZP_08011201.1| hypothetical protein HMPREF9488_02035 [Coprobacillus sp. 29_1] gi|319808057|gb|EFW04629.1| hypothetical protein HMPREF9488_02035 [Coprobacillus sp. 29_1] Length = 366 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 9/134 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I R G++Q++L E +G++ V K+E L ++ + + Sbjct: 6 LGKNIVYYRRKNGLTQDQLAEYIGVSKSSVSKWENNFTFPDIILLPQLAALFNISVDELM 65 Query: 75 DVSPTVCSDISSE------ENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 SP + + + D I T QL + + ++ ++ L I Sbjct: 66 GYSPQLSKERIKSLYNELALDMAKDPIKTYQRCQQLIKQYYSCFELLYYMAVLYLNHYI- 124 Query: 128 SSEKKYRTIEEECM 141 K I EEC+ Sbjct: 125 -LFKNKDEIIEECL 137 >gi|319938593|ref|ZP_08012980.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319806229|gb|EFW02921.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 114 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R G+SQE+L + +G++ Q V K+E + ++ +S+ + Sbjct: 6 RIQYLRKSKGISQEELADKVGVSRQAVSKWESEQSTPDLEKIIIMSDFFGVTTDYILKGI 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLN 104 V ++ + + L L Sbjct: 66 EPVADKEQKIKSLRVRYFIYHQQLLLL 92 >gi|313673033|ref|YP_004051144.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939789|gb|ADR18981.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 187 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 8/124 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K + K+IR R G++ E+L + +G T V E S L+ Sbjct: 1 MIEVNKS------YISKKIRNLRKSQGITLEQLAKAIGKTKSYVSMLENEKAIPSLSTLK 54 Query: 61 HISEVLESPISFFFDVSP--TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I I+ FF+ S + + ++ + I + + K++ Sbjct: 55 EIVSFFNMTIADFFEESEQKSDFNKEVFSFSSDAELIYSKKNEFNLYLLHKNKSFKMKTY 114 Query: 119 IIEL 122 I+EL Sbjct: 115 IVEL 118 >gi|306826725|ref|ZP_07460027.1| DNA-binding protein [Streptococcus pyogenes ATCC 10782] gi|304431014|gb|EFM34021.1| DNA-binding protein [Streptococcus pyogenes ATCC 10782] Length = 195 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++ R +SQE+L E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQMIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + T + L Sbjct: 61 LIKGDIEKMKYTITQVDKKNFKRDTKVMVTLM 92 >gi|299132893|ref|ZP_07026088.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298593030|gb|EFI53230.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 118 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 1/95 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+R R + G+SQ L G+ V +E G + L+ +++ L+ + Sbjct: 12 KRLREARDLRGLSQALLAAKAGLPPASVSHFESGPRKPSFDNLKALAKALDVTTDYLLGR 71 Query: 77 SPTVCSDISSEENNVMD-FISTPDGLQLNRYFIQI 110 S T + + D + L+L + F+++ Sbjct: 72 SETPDASAETVGRLHRDLHKLSSQDLELAQDFVEL 106 >gi|170755295|ref|YP_001781771.1| transcriptional regulator [Clostridium botulinum B1 str. Okra] gi|169120507|gb|ACA44343.1| transcriptional regulator [Clostridium botulinum B1 str. Okra] Length = 149 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 30/81 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R ++QE+L + +G++ V YE + L I++ + Sbjct: 4 ERIKKLRKERDITQEELAKNIGVSTSMVGMYETNARKPSYEVLSKIAKYFRVSTDYLLGE 63 Query: 77 SPTVCSDISSEENNVMDFIST 97 + + + D + Sbjct: 64 TNYKTTGEKFDAKLNSDKVDQ 84 >gi|167032884|ref|YP_001668115.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166859372|gb|ABY97779.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 197 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 38/115 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+R R M+ ++L E G+ + K E V +L + L I+ F Sbjct: 13 VGQRLRQVRKARQMTLKQLSEASGVPVSTLSKMELAQVSVSYEKLAAAARALNVDIAQLF 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S TV + + + Y D R+ R I Sbjct: 73 RASGTVSAPVPVTVVVDSLPAAAGYSTGTYDYHPIAGDFPERRMTPAYARIIARE 127 >gi|71907867|ref|YP_285454.1| helix-hairpin-helix DNA-binding motif-containing protein [Dechloromonas aromatica RCB] gi|71847488|gb|AAZ46984.1| Helix-turn-helix motif protein [Dechloromonas aromatica RCB] Length = 119 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 36/97 (37%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK + +G + RR LG +QE + E +G+ + + + E+G + L Sbjct: 1 MAVKKKDSARLAKRLGGNLSERRKQLGWTQEMVAERVGVDAETISRIERGAHLPSLPTLD 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 ++ L + ++ + + T Sbjct: 61 RLAVALRCSAGDLLSNEGPEEASEAATFGAWISELGT 97 >gi|77412917|ref|ZP_00789121.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77161057|gb|EAO72164.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 76 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R G+ Q+++ LGI +E G + + ++++ ++ F V Sbjct: 14 KRLKSLRQESGLKQQEIAPLLGIKQNTYSDWETGKSEPNLENVVKLAKLFKTTTDFLLGV 73 Query: 77 SPT 79 + Sbjct: 74 TDD 76 >gi|320102695|ref|YP_004178286.1| helix-turn-helix domain-containing protein [Isosphaera pallida ATCC 43644] gi|319749977|gb|ADV61737.1| helix-turn-helix domain protein [Isosphaera pallida ATCC 43644] Length = 222 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 12/113 (10%), Positives = 37/113 (32%), Gaps = 6/113 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R S E+ + G++ + + E+G + + I++V + D Sbjct: 46 QRVKTLRTERNWSLEEFSKACGVSRSMLSQIERGEANPTLAVMFRIAQVFGMSLGELIDA 105 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR-SIVS 128 ++ + ++ + +K +E + + Sbjct: 106 PSATSGIEVIRADDQAHTYRSDPDCRI-----RTLSPLHLEKDVEFYELRLAA 153 >gi|325677942|ref|ZP_08157584.1| response regulator receiver domain protein [Ruminococcus albus 8] gi|324110496|gb|EGC04670.1| response regulator receiver domain protein [Ruminococcus albus 8] Length = 196 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +GKRI R GMS++ + +G++ Q V ++E G + I +VL I Sbjct: 134 NSMIGKRIVRLREESGMSRQDFIKAMGVSAQTVYRWENGERIPSMATYMKIMQVLGVDID 193 Query: 72 FFF 74 Sbjct: 194 KML 196 >gi|224538182|ref|ZP_03678721.1| hypothetical protein BACCELL_03073 [Bacteroides cellulosilyticus DSM 14838] gi|224520204|gb|EEF89309.1| hypothetical protein BACCELL_03073 [Bacteroides cellulosilyticus DSM 14838] Length = 70 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 7 IPNPVDI--NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + N D+ N+GK I RR LG++QE L + + E G + S L I+ Sbjct: 1 MVNETDVLNNIGKIIIQRRKELGITQEDLAYSANVDRTYIGYIENGKQNISISILCKIAN 60 Query: 65 VLESPISFFF 74 VL + FF Sbjct: 61 VLNLNMKDFF 70 >gi|327463455|gb|EGF09774.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 167 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 31/81 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + D Sbjct: 61 LLLEESDKPEIKPVLSEDEKD 81 >gi|294678407|ref|YP_003579022.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477227|gb|ADE86615.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 184 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG IR R G++ ++L +G + + + E+G L ++E L +SFF Sbjct: 4 HVGDDIRALRKTRGLTLKRLAADVGRSLGWLSQIERGQTTPSVRDLGLLAERLGVTLSFF 63 Query: 74 FDVSPTVCSD 83 F S + Sbjct: 64 FRSSGRAPQE 73 >gi|149277999|ref|ZP_01884138.1| hypothetical protein PBAL39_24955 [Pedobacter sp. BAL39] gi|149231197|gb|EDM36577.1| hypothetical protein PBAL39_24955 [Pedobacter sp. BAL39] Length = 108 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 9/114 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK IR R G SQ ++ + L I+ K E G+ + SRL+ I+ + + Sbjct: 4 IGKNIRQLRQKNGWSQGEVAKRLNISIPAFSKIETGITDINISRLEQIAHLFQVSTMDII 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 ++ EE N + + ++ K+++K+I+L I Sbjct: 64 SKEGENPQSLNFEEINALKQKLSVREEEII---------KLQKKVIDLYEEIRG 108 >gi|134297168|ref|YP_001120903.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134140325|gb|ABO56068.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia vietnamiensis G4] Length = 183 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 37/96 (38%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + V +R+R R G+SQ +L + G+T + E+G L+ + E + + Sbjct: 1 MSTEVAERLRFVRNKHGLSQRELAKRAGVTNGAISLIEQGRVSPSVGSLKKLLECIPMSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + FF + S + + + + L Sbjct: 61 AEFFTFELVESRSVVSRRDQMPNLGNDALAFHLVGA 96 >gi|110636925|ref|YP_677132.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110279606|gb|ABG57792.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] Length = 75 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I+ R G+SQ L + GI+ Q+ + E G + L ++E L Sbjct: 14 IGKKIKTLREAKGLSQYALSDESGISRSQIVRLENGDLNCTLATLLVLAETLGVEPKDLL 73 Query: 75 D 75 D Sbjct: 74 D 74 >gi|94991134|ref|YP_599234.1| transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|94544642|gb|ABF34690.1| Transcriptional regulator [Streptococcus pyogenes MGAS10270] Length = 195 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++ R +SQE+L E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQMIRYRKQQALSQEELAEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + T + L Sbjct: 61 LIKGDIEKMKYTITQVDKKNFKRDTKVMITLM 92 >gi|89897035|ref|YP_520522.1| hypothetical protein DSY4289 [Desulfitobacterium hafniense Y51] gi|219667095|ref|YP_002457530.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89336483|dbj|BAE86078.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537355|gb|ACL19094.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 181 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 37/92 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG+ IR R ++ +L + L ++ + E+ + + L+ I++ L P+ Sbjct: 2 IEVGEFIRAIRKRRNLTTTQLADQLDLSNGYISLIERNIVSPSLATLKRIAQALSVPLES 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF T +++ + +L Sbjct: 62 FFLDPDTEIIYSYLKKDEQQYIPAEGRNWRLL 93 >gi|126452632|ref|YP_001067412.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|242317409|ref|ZP_04816425.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|126226274|gb|ABN89814.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|242140648|gb|EES27050.1| DNA-binding protein [Burkholderia pseudomallei 1106b] Length = 195 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 4/104 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DINQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVS 61 Query: 70 ISFFFDVS----PTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++ F+ ++E+ D S L+ Sbjct: 62 LASLFEDDRAARAASPLSRATEQPVWKDPASGYVRRNLSPAVAS 105 >gi|254180890|ref|ZP_04887488.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|184211429|gb|EDU08472.1| DNA-binding protein [Burkholderia pseudomallei 1655] Length = 195 Score = 48.7 bits (114), Expect = 2e-04, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 4/91 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DINQRIARRVRTLRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVS 61 Query: 70 ISFFFDVS----PTVCSDISSEENNVMDFIS 96 ++ F+ ++E+ D S Sbjct: 62 LASLFEDDRAARAASPLSRATEQPVWKDPAS 92 >gi|332716375|ref|YP_004443841.1| transcriptional regulator [Agrobacterium sp. H13-3] gi|325063060|gb|ADY66750.1| transcriptional regulator [Agrobacterium sp. H13-3] Length = 472 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 8/129 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R +Q + E LGI+ + + E V AS L + E + ++ Sbjct: 6 LFIGRKVRGLRENARATQAQFAERLGISASYLNQIENNQRPVSASVLVTLVEKFQLDVTE 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 E F++ GLQ + Q +++ + + Sbjct: 66 LATGENDRLVSAVREALKDPLFLNYEPGLQELKLIAQNAP--------GFAHALLRAHQA 117 Query: 133 YRTIEEECM 141 YR E+ + Sbjct: 118 YRQNSEQLV 126 >gi|324990830|gb|EGC22765.1| transcriptional regulator [Streptococcus sanguinis SK353] Length = 136 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 29/64 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K I + R +SQEKL E +G++ Q + K+E G + +++ + + Sbjct: 1 MISKNIAILRKRENISQEKLAEEIGVSRQTIAKWEAGESVPDVIYSSQLADFFDVSLDEL 60 Query: 74 FDVS 77 + Sbjct: 61 VHLE 64 >gi|309704472|emb|CBJ03821.1| putative phage repressor protein [Escherichia coli ETEC H10407] Length = 216 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR RR L ++Q+ L + G+ V +EK + + LQ ++ L+ + Sbjct: 6 RIRQRRKELNLTQQALADLTGVNRVTVTGWEKDDYQPNGANLQALANALKCDPLWLVSGK 65 Query: 78 PTVCSDI 84 + I Sbjct: 66 GSPEPKI 72 >gi|311278399|ref|YP_003940630.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308747594|gb|ADO47346.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 76 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + + G ++ R+ G+SQE + G+ V E+GV + +++ Sbjct: 2 KNSSSIQAQFGAHLKKLRLQSGLSQEAFADKCGLDRTYVSGIERGVRNPTLEVIGVLAKG 61 Query: 66 LESPISFFFDVS 77 L I F Sbjct: 62 LGMDIKELFSFE 73 >gi|239907891|ref|YP_002954632.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] gi|239797757|dbj|BAH76746.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] Length = 107 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 14/116 (12%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GKRI+ R G++Q +L E ++ + + + E+G L ++S L+ + Sbjct: 4 IHEILGKRIQSLRKKAGLTQLELAEKANLSLKHLGEIERGRGNPTLESLHNLSVALDISL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 FD+ +D ++T +L IQ + KI++++ ++ Sbjct: 64 MKLFDLE--------------VDLLTTKVTEELAIDIIQSASPSDKTKILKILTAL 105 >gi|291302743|ref|YP_003514021.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571963|gb|ADD44928.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 194 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R+R R ++ +L E GI+ + + E G R L +++V Sbjct: 8 DEVLTAVGPRLRELRRQRNVTLARLAEATGISESTLSRLESGARRPNLELLLPLAKVYGV 67 Query: 69 PISFF 73 P+ Sbjct: 68 PLDEL 72 >gi|222083000|ref|YP_002542365.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221727679|gb|ACM30768.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 205 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+RL R +LGM+ + L + + K E G L + EVL + I + F Sbjct: 24 LGTRLRLARQMLGMTLKALAVAADCSESLLSKIENGKASPSLPMLHRLVEVLGTNIGWMF 83 Query: 75 DVSPTVCS 82 + + Sbjct: 84 EEADGEEG 91 >gi|91778552|ref|YP_553760.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691212|gb|ABE34410.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 91 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 27/82 (32%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G +R R G SQE+L E G+ V + E+G + ++ + PI Sbjct: 6 REFGATVRRLREARGWSQEQLAEYAGLNRSYVGEVERGSAIASIVTVDKLARAFQVPIEH 65 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 S +D Sbjct: 66 LLTPSSDASGIAVLARAAFVDP 87 >gi|332365448|gb|EGJ43209.1| XRE family transcriptional regulator [Streptococcus sanguinis SK355] Length = 168 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 2/79 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 73 FF--DVSPTVCSDISSEEN 89 D I SE+ Sbjct: 61 LLLEDGDKPEIKSILSEDE 79 >gi|238063042|ref|ZP_04607751.1| transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237884853|gb|EEP73681.1| transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 199 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R++ R G++ L E GI+ + + E G R L I++ + P+ Sbjct: 14 EVGPRLKRLRTQRGVTLTALAEATGISKSTLSRLEGGQRRPSLELLLPIAQAHQVPLDEL 73 >gi|229815067|ref|ZP_04445404.1| hypothetical protein COLINT_02109 [Collinsella intestinalis DSM 13280] gi|229809297|gb|EEP45062.1| hypothetical protein COLINT_02109 [Collinsella intestinalis DSM 13280] Length = 206 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 36/79 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +I+ RR +G+SQE+L E L ++ Q + +E+ L +S + ++ I Sbjct: 1 MDISNQIKTRREAMGLSQEQLAEKLYVSRQTISNWERDKTYPDVQSLLMLSVLFDTSIDT 60 Query: 73 FFDVSPTVCSDISSEENNV 91 TV + + Sbjct: 61 LVKGDVTVMEEAVERDRKY 79 >gi|118590306|ref|ZP_01547709.1| putative transcription regulator protein [Stappia aggregata IAM 12614] gi|118437278|gb|EAV43916.1| putative transcription regulator protein [Stappia aggregata IAM 12614] Length = 147 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 47/124 (37%), Gaps = 14/124 (11%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N D +G+RI R +S +L LGI +Q +E + +++L ++ VL Sbjct: 35 NSSDYTLGERICKARDASSLSTAQLARRLGIKTSTLQSWESDRSEPRSNKLVLLAGVLNV 94 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 ++ T SE N D S L +V+++ L I + Sbjct: 95 SPTWLLVGRGTPP---FSETNTTSDLDSMRVALD-----------RVQRQAQALADEIAA 140 Query: 129 SEKK 132 + + Sbjct: 141 LQDR 144 >gi|114705572|ref|ZP_01438475.1| hypothetical protein FP2506_13939 [Fulvimarina pelagi HTCC2506] gi|114538418|gb|EAU41539.1| hypothetical protein FP2506_13939 [Fulvimarina pelagi HTCC2506] Length = 497 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 53/144 (36%), Gaps = 10/144 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NK I G RIR R L ++Q + E LGI+ + E+ + L Sbjct: 1 MAENK-------IFAGPRIRSIRHGLSLTQTAMAEGLGISPSYLNLIERNQRPLTVQLLL 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +SE + ++ + ++ + ++ + +L + + I+ Sbjct: 54 RLSETYKVDLADLRGSEDKILGELKALFSDPLLSGEIAGDQELAEIAEAAPNAA--KGIL 111 Query: 121 ELVRSIVSSEKKYRTIEEECMVEQ 144 +L R+ ++ T + ++ Sbjct: 112 KLYRAY-REQQNRLTDLSTLLAQE 134 >gi|85375066|ref|YP_459128.1| DNA-binding protein, putative [Erythrobacter litoralis HTCC2594] gi|84788149|gb|ABC64331.1| DNA-binding protein, putative [Erythrobacter litoralis HTCC2594] Length = 220 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 8 PNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P +D +GKR+ R G++ ++ E LG++ V +E ++ ASR+ I+EVL Sbjct: 117 PPGIDRASLGKRLATMRQERGLTLAQVAEELGVSKPTVWAWEHDRSQPVASRISAIAEVL 176 Query: 67 ESPISFFFDVSPTVCSD 83 T ++ Sbjct: 177 GVSEIELATGRDTSQAE 193 >gi|83590551|ref|YP_430560.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83573465|gb|ABC20017.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 152 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 32/78 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R +SQ ++ + L + + YEK R L+ +++ + I + Sbjct: 4 LGERLAFLRKERALSQAEMAKLLNMGQSTIAMYEKNKRRPDPETLERLADFFDVSIDYLL 63 Query: 75 DVSPTVCSDISSEENNVM 92 + + + ++ Sbjct: 64 GRADSRQKETYPLQDETQ 81 >gi|158317409|ref|YP_001509917.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158112814|gb|ABW15011.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 490 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 40/124 (32%), Gaps = 15/124 (12%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVL 66 P P + +G +R R G++Q++L + LG V K E G + S L+HI+ L Sbjct: 13 PTPTSVGIGSLLRAYRQAHGLTQQQLADLLGFDQSYVSKVESGRRAIHDISTLRHIARNL 72 Query: 67 ESPISF-------FFDVSPTVCSDISSEENNVMDFIST-------PDGLQLNRYFIQIDD 112 D + E+ + L R ++ Sbjct: 73 GLSPEDVGLAPGGLADRRREPPRGSAVEKVAGSQRAWRLTRDHLNHHRISLARAAARLYP 132 Query: 113 VKVR 116 R Sbjct: 133 EAYR 136 >gi|327467942|gb|EGF13432.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK330] Length = 167 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDY 60 Query: 73 FFDVSPTVCS 82 Sbjct: 61 LLLEDSDKPE 70 >gi|325123768|gb|ADY83291.1| hypothetical protein BDGL_002705 [Acinetobacter calcoaceticus PHEA-2] Length = 209 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 34/93 (36%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N V +VG IRL R +SQ+ L + G++ + + E G + ++L I+ VL Sbjct: 31 NTVLQHVGTNIRLLRDERDLSQQDLADQAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 90 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 + + + L Sbjct: 91 DFKTIVSAPEHKEHAVVNALAWQGKDEESKATL 123 >gi|317471258|ref|ZP_07930622.1| hypothetical protein HMPREF1011_00970 [Anaerostipes sp. 3_2_56FAA] gi|316901266|gb|EFV23216.1| hypothetical protein HMPREF1011_00970 [Anaerostipes sp. 3_2_56FAA] Length = 155 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G I L R G++Q +LGE +G+T + V ++E G + + + E E I+ Sbjct: 19 KKIGIFIALLRRERGITQAELGEKIGVTNKTVSRWENGNYMPDIATMLSLCEEFEISINE 78 Query: 73 FFDVSPTVCSDISSEENNV 91 + + + Sbjct: 79 LLSGQRLGSDEFRKKADEN 97 >gi|298482236|ref|ZP_07000423.1| DNA-binding protein [Bacteroides sp. D22] gi|298271523|gb|EFI13097.1| DNA-binding protein [Bacteroides sp. D22] Length = 159 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 52/141 (36%), Gaps = 13/141 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G+ IR R+ M+QE L E + ++ V KYEK + + LQ + L P + Sbjct: 11 VHHGRNIRRTRIEKNMNQEGLSELVHLSQPAVSKYEK-MKVIDDEMLQRFARALNVPFDY 69 Query: 73 FFDVSPTVCSDISSEENNVMDFIST---PDGLQLNRYF---------IQIDDVKVRQKII 120 + + + +T + + + ++++ KI Sbjct: 70 LKTLEEDAQTVVFENNTVNDSEQNTGGAKINIGTVKSYTEDTDSSNDNRVNNFNPIDKIT 129 Query: 121 ELVRSIVSSEKKYRTIEEECM 141 EL ++ + + E + Sbjct: 130 ELYERLLKEKDEKYAALERRL 150 >gi|257440174|ref|ZP_05615929.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197526|gb|EEU95810.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 220 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 7/112 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R G++Q +L + L +T + V ++E+GV + L+ +++ L ++ Sbjct: 7 GAFLARMRKSQGLTQAELAQQLHVTDKAVSRWERGVGLPDINTLEPLADALGLTLADLMH 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 +DI+ E F L R ID VR + L ++ Sbjct: 67 CRDPQEADIAPEVPLEDFF-------TLLRRQQSIDWRSVRAVLFWLSAALA 111 >gi|228924819|ref|ZP_04087976.1| transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834828|gb|EEM80310.1| transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 186 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK+I R MSQE+L + ++ Q + +E N L +S + + Sbjct: 1 MNIGKQIHYFRKRDNMSQEELAAKIHVSRQSISNWENERNYPDIHNLLMMSILFNVSLDN 60 Query: 73 FFDVS 77 Sbjct: 61 LVKGD 65 >gi|191638861|ref|YP_001988027.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|190713163|emb|CAQ67169.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|327382909|gb|AEA54385.1| hypothetical protein LC2W_2053 [Lactobacillus casei LC2W] gi|327386093|gb|AEA57567.1| hypothetical protein LCBD_2071 [Lactobacillus casei BD-II] Length = 344 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 46/92 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR RR+ LG++QE+L +G++ V +EKGV+ + L ++ +L + ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELANKIGVSAPAVSIWEKGVSYPDITLLPALARILGTDVNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S T+ + S + + G Q Sbjct: 61 LLTFSVTMDPEESRHLYEKLMTTAKDAGWQAA 92 >gi|320326809|gb|EFW82846.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882609|gb|EGH16758.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 123 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 47/112 (41%), Gaps = 11/112 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I++ R + +SQ +L +G + +YE+G++ +L +S L+ + Sbjct: 18 VGAKIKVLRKMADLSQAELAALIGCDAPIIGRYERGIHMPSIEQLIKLSTALKVSPAELL 77 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + QL+ ++ID + +KII+ +S+ Sbjct: 78 PNQDDEIRQQLISLRS-----------QLSLIGMKIDSPVILEKIIDHAKSL 118 >gi|317501814|ref|ZP_07960000.1| hypothetical protein HMPREF1026_01944 [Lachnospiraceae bacterium 8_1_57FAA] gi|331088665|ref|ZP_08337575.1| hypothetical protein HMPREF1025_01158 [Lachnospiraceae bacterium 3_1_46FAA] gi|316896847|gb|EFV18932.1| hypothetical protein HMPREF1026_01944 [Lachnospiraceae bacterium 8_1_57FAA] gi|330407188|gb|EGG86691.1| hypothetical protein HMPREF1025_01158 [Lachnospiraceae bacterium 3_1_46FAA] Length = 429 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 34/90 (37%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K++ N G+ I +R GM+Q+++ E LG+T + V K+E L + Sbjct: 36 EKRVKNKGGNKTGEFIARKRKERGMTQKEMAELLGVTNKAVSKWETSQGMPDIGILPELG 95 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMD 93 + L + + + D Sbjct: 96 KALGVTVDEILMGEQIEQEKRAETAVSDED 125 >gi|282851951|ref|ZP_06261311.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|282556960|gb|EFB62562.1| DNA-binding protein [Lactobacillus gasseri 224-1] Length = 153 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 31/75 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G+SQ + +GIT Q V YE+G Q ++++ E + + + Sbjct: 2 NRIKQLREEKGVSQSDVANAVGITRQAVSLYEQGKRAPKLEIWQKLADLFEVSVPYLQGL 61 Query: 77 SPTVCSDISSEENNV 91 S + + Sbjct: 62 SEMSEQVYLIQSTDC 76 >gi|210622958|ref|ZP_03293463.1| hypothetical protein CLOHIR_01411 [Clostridium hiranonis DSM 13275] gi|210153924|gb|EEA84930.1| hypothetical protein CLOHIR_01411 [Clostridium hiranonis DSM 13275] Length = 141 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 36/91 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R G++Q+++ + +G T + +YE A L ++++ + I + Sbjct: 2 VTLGSRLKALRQEKGLTQKEVAKLIGTTDVSIGRYEMDARVPKADILNSLAKLYDVEIDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 ++ + ++ Sbjct: 62 LLTGKEETEQPLNDRDKKDIEKDLKKIMDDF 92 >gi|209918882|ref|YP_002292966.1| putative phage repressor [Escherichia coli SE11] gi|209912141|dbj|BAG77215.1| putative phage repressor [Escherichia coli SE11] Length = 215 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 10/83 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + +G R++ R G++Q +LG+ G+T + +EK +N G+ L Sbjct: 1 MMES----------LGIRLKKLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALS 50 Query: 61 HISEVLESPISFFFDVSPTVCSD 83 +++ L + S+ + Sbjct: 51 KLAQALGTTESYLLYGVSSPELS 73 >gi|254420939|ref|ZP_05034663.1| conserved domain protein [Brevundimonas sp. BAL3] gi|196187116|gb|EDX82092.1| conserved domain protein [Brevundimonas sp. BAL3] Length = 476 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 3/107 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R L ++Q + LG++ + E+ V A L ++E + + Sbjct: 9 LFLGARLKRLRRDLALTQTAMAADLGVSPSYLNHIERNQRPVSAQLLLRLAETYDVDLRS 68 Query: 73 FFDV---SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ ++ + + +QL + D +R Sbjct: 69 LNQGGAADEARLGEVLADPLFAGLSLPRHELVQLLEEAPGVADAMLR 115 >gi|146299807|ref|YP_001194398.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154225|gb|ABQ05079.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 136 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 54/138 (39%), Gaps = 17/138 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R + M QE L + LG Q V + + +L +++ L + Sbjct: 9 HIGRKISRIRELRDMKQEALAQALGTNQQAV-SIIENSETIDEEKLVEVAKALGVTVEAI 67 Query: 74 FDVSPTVC-------SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + S +D + + N + + +L F + +L + Sbjct: 68 KNFSDEAAINYFNSFTDTKNSQVNFGNHCTFNPLDKLVEAFEENK---------KLYERL 118 Query: 127 VSSEKKYRTIEEECMVEQ 144 + SEK+ ++ E+ + ++ Sbjct: 119 LESEKEKKSYLEKLLKDK 136 >gi|238786954|ref|ZP_04630754.1| Transcriptional regulator, XRE family [Yersinia frederiksenii ATCC 33641] gi|238724742|gb|EEQ16382.1| Transcriptional regulator, XRE family [Yersinia frederiksenii ATCC 33641] Length = 122 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 2/87 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + NKK + +G R+R R G SQE + G++ + KYE+G A+ L Sbjct: 1 MSNKK--EELLFLIGARLREEREKTGESQEAMATNFGVSTRTWGKYERGETVPDAATLAL 58 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEE 88 ++ + + T IS+EE Sbjct: 59 LNAQYGLDVMYILTGKRTPPDTISTEE 85 >gi|115351079|ref|YP_772918.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115281067|gb|ABI86584.1| transcriptional regulator, XRE family [Burkholderia ambifaria AMMD] Length = 219 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 7/103 (6%) Query: 1 MVGNKKIPNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M + + P ++ + +R+R R + G + + L G++ + E+ A Sbjct: 1 MQESTRPPVDDTGINERIARRVRDLRTLRGYTLDALAARSGVSRSMISLIERASASPTAV 60 Query: 58 RLQHISEVLESPISFFF----DVSPTVCSDISSEENNVMDFIS 96 L ++ L ++ F D +P +++ D S Sbjct: 61 VLDKLAAGLGVSLAGLFGGERDDAPAQPLVRRAQQAEWRDPAS 103 >gi|116493699|ref|YP_805433.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|116103849|gb|ABJ68991.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] Length = 373 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 11/115 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++INVG I R G++Q+ L + +G++ V K+E G + + L ++ + I Sbjct: 1 MEINVGAVISANRKQKGITQQALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + S + + F V + I L+R Sbjct: 61 DKLMAYDAQLSSTEI-----------RRIYTSMKQAFETQPGDAVLKSIRNLIRR 104 >gi|332364291|gb|EGJ42066.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 99 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 2/94 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ ++Q+++ E L ++ Q +E G + G L + I + Sbjct: 4 ERLKSLRLEANLTQKQVAEKLNMSQPAYQSWESGKRKPGEETLNKFANFFSVSIDYLLGK 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + SD + + + L +I Sbjct: 64 TDNRKSDEINLSE--FEILYRKTSKNLTEQQKRI 95 >gi|332157761|ref|YP_004423040.1| Predicted transcription regulator, containing DNA-binding HTH domain protein [Pyrococcus sp. NA2] gi|331033224|gb|AEC51036.1| Predicted transcription regulator, containing DNA-binding HTH domain protein [Pyrococcus sp. NA2] Length = 66 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R + G++QE+L + LG+T Q + EKG I++ I F Sbjct: 3 NRLRELREMYGLTQEELAKKLGVTRQTIIAIEKGKYDPSLRLAFKIAKFFGVKIEDIFIY 62 Query: 77 SPTV 80 Sbjct: 63 DDEE 66 >gi|239636398|ref|ZP_04677400.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri L37603] gi|239597753|gb|EEQ80248.1| transcriptional regulator, Cro/CI family [Staphylococcus warneri L37603] Length = 179 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 35/89 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MEIGYKLKNLRKIKNLTQEELAERTDLSKGYISQIESQNASPSMETFLNILEVLGTSASD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 FF + EE + D L Sbjct: 61 FFKETEQQKVIYKKEEQVIYDEYDRGYIL 89 >gi|187939670|gb|ACD38813.1| predicted transcriptional regulator protein [Pseudomonas aeruginosa] gi|187939749|gb|ACD38890.1| hypothetical protein PACL_0632 [Pseudomonas aeruginosa] Length = 271 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 4/110 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++L R ++Q +L E +G++ + + EKG + + L I+ V + + + Sbjct: 1 MKLARKHADLTQRQLAEAVGVSQPVISQLEKGE-NLQSVHLLKIANVCGVDPEWLAEGTG 59 Query: 79 TVCSDISSEENNVMDFISTPDGL---QLNRYFIQIDDVKVRQKIIELVRS 125 + E + S+ + L Q + R++I+ S Sbjct: 60 RPPGFSAREPSAEYQAASSTADIVRSMLASKAAQKLSAEARERILNAAES 109 >gi|169335374|ref|ZP_02862567.1| hypothetical protein ANASTE_01786 [Anaerofustis stercorihominis DSM 17244] gi|169258112|gb|EDS72078.1| hypothetical protein ANASTE_01786 [Anaerofustis stercorihominis DSM 17244] Length = 225 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 30/61 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R G+SQE +G++ Q + K+E + +L IS++ + + Sbjct: 1 MDLGNKLYTLRKQKGISQETAANEIGVSRQTISKWETNSSYPEFDKLVLISKLYDISLDE 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|108804104|ref|YP_644041.1| XRE family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108765347|gb|ABG04229.1| transcriptional regulator, XRE family with cupin sensor [Rubrobacter xylanophilus DSM 9941] Length = 203 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+R+R+ R G++ E L G++ + K E+G ++E L +S Sbjct: 15 RRVGERVRMLRRERGLTLEGLAGRSGVSRAMISKVERGEKVPTLVVAARLAEGLGVSLSE 74 Query: 73 F 73 Sbjct: 75 L 75 >gi|188587172|ref|YP_001918717.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351859|gb|ACB86129.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 192 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 29/144 (20%), Positives = 55/144 (38%), Gaps = 10/144 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N +G+ I+ R + + + E GI+ + + E+G + L Sbjct: 1 MSKNYSDTEINLSEIGETIKKLRQTKDLKLKDVSEETGISTGLLSQIERGQVQASLGSLW 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 IS+ LE P+ FF+ + +E+ I + + Q+ + +KI Sbjct: 61 KISKALEVPLGSFFEELNREKVSVVRKEDRKQLDIPRSNVI------YQLLSPDMNRKIE 114 Query: 121 ELVRSI----VSSEKKYRTIEEEC 140 L+ ++ V +K EEC Sbjct: 115 MLLVTLKSGEVEEHEKVTHEGEEC 138 >gi|167839985|ref|ZP_02466669.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 95 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 25/71 (35%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R SQE+L E G+ V + E+G + ++ PI+ Sbjct: 9 GAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLLT 68 Query: 76 VSPTVCSDISS 86 S V Sbjct: 69 PSGEVSESAPH 79 >gi|167771688|ref|ZP_02443741.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM 17241] gi|167666328|gb|EDS10458.1| hypothetical protein ANACOL_03060 [Anaerotruncus colihominis DSM 17241] Length = 110 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 33/75 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RIR R G+SQE L E +GI+ + E G ++ L +++ L+ F Sbjct: 5 EIGQRIRKIRKAHGLSQESLAERVGISNTHMSHIETGNTKLSLPVLVALADALDVCTDDF 64 Query: 74 FDVSPTVCSDISSEE 88 T S + Sbjct: 65 LHKRSTFVRSASIDA 79 >gi|89070253|ref|ZP_01157577.1| putative aldehyde dehydrogenase protein [Oceanicola granulosus HTCC2516] gi|89044173|gb|EAR50331.1| putative aldehyde dehydrogenase protein [Oceanicola granulosus HTCC2516] Length = 187 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 10/135 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D V +R+R+ R G+SQ +L G+ + + E + + L+ I + + ++ Sbjct: 7 DQMVAQRLRVVRQSRGLSQRELARRTGVGSGTISQIESMATQPSVAVLKKILDGVPMDLA 66 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF + + +D + +L + + + L Sbjct: 67 TFFSFELALGDAPVFRKEEHVDIGAPGVAYRLVAA------QRPNRALQMLHEFYQPGRD 120 Query: 132 KYRTIE----EECMV 142 R EEC + Sbjct: 121 SGRRPLSHEGEECAI 135 >gi|53720319|ref|YP_109305.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|167817109|ref|ZP_02448789.1| putative DNA-binding protein [Burkholderia pseudomallei 91] gi|237813540|ref|YP_002897991.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|254299001|ref|ZP_04966451.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|52210733|emb|CAH36717.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|157809113|gb|EDO86283.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|237503057|gb|ACQ95375.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] Length = 195 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 4/91 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DINQRIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVS 61 Query: 70 ISFFFDVS----PTVCSDISSEENNVMDFIS 96 ++ F+ ++E+ D S Sbjct: 62 LASLFEDDRAARAASPLSRATEQPVWKDPAS 92 >gi|332798069|ref|YP_004459568.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695804|gb|AEE90261.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 190 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-SFFFD 75 RI+ R M+ ++L E IT + + E+G+ + ++ I+ L+ P+ FF + Sbjct: 13 SRIKKFRKAKKMTIKELAEKANITSSMLSQIERGLANPSINTMKLIANALDVPLFKFFME 72 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL 101 + S + + EN ++ +G+ Sbjct: 73 EEDDIRSQVVTPENRRRVYLPDSNGV 98 >gi|320176833|gb|EFW51862.1| Putrescine utilization regulator [Shigella dysenteriae CDC 74-1112] Length = 185 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 8/105 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P GKR+ R G+SQ + E G+T + E+ S LQ Sbjct: 1 MSDEGLAP-------GKRLSEIRQQQGLSQRRAAELSGLTHSAICTIEQDKVSPAISTLQ 53 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +V +S FF + + ++++++ S ++L Sbjct: 54 KLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLV 98 >gi|313205461|ref|YP_004044118.1| helix-turN-helix domain protein [Paludibacter propionicigenes WB4] gi|312444777|gb|ADQ81133.1| helix-turn-helix domain protein [Paludibacter propionicigenes WB4] Length = 266 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI R G+SQE+L + +G + + + E G +G +Q ++ VL + Sbjct: 8 KQIGQRITELRKTKGLSQEELAKSIGFSRPSLAQVELGNRNIGILEMQKLATVLGFSLDD 67 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + ++ E + Sbjct: 68 IMSENFNSKHELKHETAMPKEI 89 >gi|283833076|ref|ZP_06352817.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] gi|291070694|gb|EFE08803.1| toxin-antitoxin system, antitoxin component, Xre family [Citrobacter youngae ATCC 29220] Length = 191 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 36/94 (38%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ +G RIRL R G S L E G++ + K E+G + A+ L +S Sbjct: 6 DSINQRIGARIRLERESRGWSLTDLAERAGVSRAMIHKIERGESSPTATLLGRLSGAFGI 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 +S + + + + L+ Sbjct: 66 SMSMLIARAEMQEGKLLRFADQPVWHDPQSHYLR 99 >gi|302381785|ref|YP_003817608.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192413|gb|ADK99984.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 67 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 24/65 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R SQ L LG++ Q V E G I+ V E PI F Sbjct: 3 NRLKVLRAERNWSQADLAAALGVSRQTVNALETGRYDPSLPLAFKIARVFEQPIESIFSD 62 Query: 77 SPTVC 81 + Sbjct: 63 AGASA 67 >gi|206974503|ref|ZP_03235419.1| DNA-binding protein [Bacillus cereus H3081.97] gi|206747146|gb|EDZ58537.1| DNA-binding protein [Bacillus cereus H3081.97] Length = 374 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP--------DGLQLNRYFIQIDDVKVRQKIIEL-V 123 P + + + + + + + ++ + + + ++ ++ + Sbjct: 64 LISYKPQMEQEDIKDLYHRLAEAFSEEPFDEVMMECREIIKKYYSCFPLLLQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTKDTDRRIEILEEAM 141 >gi|196033431|ref|ZP_03100843.1| DNA-binding protein [Bacillus cereus W] gi|229196038|ref|ZP_04322790.1| Transcriptional regulator, MerR [Bacillus cereus m1293] gi|195993865|gb|EDX57821.1| DNA-binding protein [Bacillus cereus W] gi|228587420|gb|EEK45486.1| Transcriptional regulator, MerR [Bacillus cereus m1293] Length = 181 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|159044104|ref|YP_001532898.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911864|gb|ABV93297.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 208 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 13/88 (14%) Query: 1 MVGNKKIPNPVDIN-------------VGKRIRLRRMILGMSQEKLGECLGITFQQVQKY 47 M K P+ + ++ +G R+R R + E+ G+ + K Sbjct: 1 MTEPDKEPSLIRLHRESGDTIPVEPLNLGSRVRDLRKARNWTLEQAAGQAGLARSTLSKI 60 Query: 48 EKGVNRVGASRLQHISEVLESPISFFFD 75 E G L+ +++ LE I F Sbjct: 61 ENGQMSPTYEALKKLADGLEITIPQLFT 88 >gi|160881041|ref|YP_001560009.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160429707|gb|ABX43270.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 200 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK I+ R G +Q+++ L I+ + V K+E G S L +S VL + Sbjct: 6 VGKLIKQLRKEHGYTQQQVANALNISNKTVSKWENGFGCPDVSLLGELSIVLGVDLEQML 65 Query: 75 DV 76 Sbjct: 66 KG 67 >gi|295106009|emb|CBL03552.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 153 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 29/68 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ + R ++QE + L +T Q V ++E G G + I+ + P+ Sbjct: 1 MAIGESLARMRRERNLTQEDVARRLYVTRQAVSRWETGETEPGVDMCKLIAATFDMPLME 60 Query: 73 FFDVSPTV 80 ++ Sbjct: 61 LLEMPDKD 68 >gi|259502231|ref|ZP_05745133.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] gi|259169849|gb|EEW54344.1| conserved hypothetical protein [Lactobacillus antri DSM 16041] Length = 126 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 12/107 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--- 73 ++ R G+SQE+L + L ++ Q V K+E G ++ I+++L+ + Sbjct: 6 HQLANLRQAAGLSQEQLADQLHVSRQAVSKWENGSTLPDIDKIVQIADILQVSLDELVLG 65 Query: 74 ---------FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 D S +EN+ L RY+ I Sbjct: 66 KAPTVSQSKLDRLIDAHLQQSQQENHWRYREINNGWEFLARYWWLIP 112 >gi|260854614|ref|YP_003228505.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|257753263|dbj|BAI24765.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] Length = 215 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + +G R++ R G++Q +LG+ G+T + +EK +N G+ L Sbjct: 1 MMES----------LGIRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALS 50 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEEN 89 +++ L + S+ + + Sbjct: 51 KLAQALGTTESYLLYGVSSPELSFVQSTS 79 >gi|227509901|ref|ZP_03939950.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227512835|ref|ZP_03942884.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227083835|gb|EEI19147.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227190621|gb|EEI70688.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 78 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R +SQ L E +G+ Q + E + I++VL + ++ F Sbjct: 13 NRVREYRKKQKLSQFSLAEKVGVARQTINLIENDKYNPSLNLCISIAKVLGTDLNTLFWE 72 Query: 77 SPTVCS 82 S Sbjct: 73 VEDNES 78 >gi|255100973|ref|ZP_05329950.1| putative regulatory protein [Clostridium difficile QCD-63q42] Length = 122 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKRI++ R+ ++QE + + +G+T Q V E G + V + L I+ +L + Sbjct: 6 KAIGKRIKIARIRTNLTQETVADKIGVTPQHVSNIETGNSSVSLTTLVAIANLLNVSVDE 65 Query: 73 FFDV 76 Sbjct: 66 LLCD 69 >gi|197301908|ref|ZP_03166972.1| hypothetical protein RUMLAC_00630 [Ruminococcus lactaris ATCC 29176] gi|197298976|gb|EDY33512.1| hypothetical protein RUMLAC_00630 [Ruminococcus lactaris ATCC 29176] Length = 111 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 32/75 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ RR+ LG +QE E GI++ K E+G +++ + ++ Sbjct: 9 IGRTLKERRLQLGYTQELAAEKSGISYSYYTKIERGEQLPSIEICVQLAQTFHLSLDYWL 68 Query: 75 DVSPTVCSDISSEEN 89 + + S + Sbjct: 69 LGTSSDAEISSELID 83 >gi|146301462|ref|YP_001196053.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155880|gb|ABQ06734.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 138 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 11/146 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + PN ++G++I R + M QE L + LG Q + + + +L Sbjct: 1 MSTVTKPN----HIGRKISRIRELKDMKQEALAQALGTNQQAI-SIMENSETIEEEKLME 55 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 +++ L + + S + + N+ + + G F + K+ + + E Sbjct: 56 VAKALGVSVEAIKNFSEEGVFNYFNTFNDTNNTGAFNFGTNH-CTFHPL--DKLMESVDE 112 Query: 122 ---LVRSIVSSEKKYRTIEEECMVEQ 144 L ++ +EK E+ + + Sbjct: 113 NKKLYERLLQAEKDKIEYLEKLLKAK 138 >gi|328883064|emb|CCA56303.1| hypothetical protein SVEN_3017 [Streptomyces venezuelae ATCC 10712] Length = 126 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 31/58 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G RIR R G+SQ++L + + + + VQ+YE+G + L I++ L ++ Sbjct: 67 GHRIRELRTAAGLSQDQLADRIHMERRSVQRYERGERDPRFTDLVLIADALGVTVAEL 124 >gi|254496193|ref|ZP_05109088.1| phage repressor [Legionella drancourtii LLAP12] gi|254354585|gb|EET13225.1| phage repressor [Legionella drancourtii LLAP12] Length = 220 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 38/107 (35%), Gaps = 1/107 (0%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G RI R LG++ ++L ++ ++ +E+ G + ++E L Sbjct: 2 DIREQIGNRITKARKELGITIKELAARTVTLSPARISNWEQCTRSPGPLEAKLLAEQLGV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 S+ ++ D+ N I + + + + Sbjct: 62 SASYLLCLTDNPQGDLIQNPENKFRHIPILNTKEALHAREILGQQEP 108 >gi|238059861|ref|ZP_04604570.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237881672|gb|EEP70500.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 74 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 9/76 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 MV K+ N IR R G M+Q +L + +G+T Q + E+G Sbjct: 1 MVKPTKVTNS--------IRALRFANGEMTQAELADRVGVTRQTIIAIEQGRYSPSLEVA 52 Query: 60 QHISEVLESPISFFFD 75 I+ V P+ F+ Sbjct: 53 FQIARVFNVPLDDVFE 68 >gi|255279970|ref|ZP_05344525.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255269743|gb|EET62948.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 257 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 45/102 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ + +R ++Q++L + L ++ + V K+E+G + + L ++E L ++ + Sbjct: 10 GRFVAQQRKKKKLTQKELAQKLYVSDKAVSKWERGSSMPDIALLTPLAEALGVTVTELLE 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++ S ++ + + + ++ K ++ Sbjct: 70 GKEMEKTEESRMADDSHLEMLLKKAVTITEDTPEMRRDKKKR 111 >gi|222530497|ref|YP_002574379.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457344|gb|ACM61606.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 145 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 58/145 (40%), Gaps = 9/145 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N + +G +IR R G + +L G+ + + E+G + + L I++ L Sbjct: 3 KKNKIARALGLKIRKLREEKGWTINQLALYAGVNPTSIMRAERGESELSLGNLLRIAKAL 62 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI-------DDVKVRQKI 119 + ++ + S + EE + TPD ++ R + ++ V+Q I Sbjct: 63 KVDLNTLVEESMDQIV-LGDEELVPEEKDKTPDIYEIIRKAENLNFKGIPVNEPDVKQAI 121 Query: 120 IELVRSIVSSEKKYRTIEEECMVEQ 144 +E + + K +E +E+ Sbjct: 122 VEAI-TFAIRLKAKEKRQENNKIEE 145 >gi|187919377|ref|YP_001888408.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717815|gb|ACD19038.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 183 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 37/94 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I V R++ R G+SQ +L + G+T + E+ L+ + E + + Sbjct: 1 MSIEVATRLQYIRKKNGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + FF V + S ++ + + L Sbjct: 61 AEFFTFEVEVERSVVSRRADMPNLGNESIEFYLA 94 >gi|254183963|ref|ZP_04890554.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] gi|184214495|gb|EDU11538.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] Length = 152 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 15/111 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R+R R +SQ E G+T + YEKG A+ L+ ++ + + Sbjct: 2 VSIGDRLREERKRTSLSQRAFAERGGVTEKTQVLYEKGERVPDAAYLEQVAA-AGIDVLY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + E ++ + D K R ++ L+ Sbjct: 61 VLTGQRNASELSADE--------------EVLLAGYRSLDAKGRAGVLGLI 97 >gi|149012706|ref|ZP_01833682.1| phage transcriptional repressor [Streptococcus pneumoniae SP19-BS75] gi|147763306|gb|EDK70244.1| phage transcriptional repressor [Streptococcus pneumoniae SP19-BS75] Length = 263 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 49/138 (35%), Gaps = 9/138 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K++ + + I R G++Q++L + +GIT + Y K + +Q Sbjct: 1 MDEKKRM-----QIIAENITHFRKQRGITQKELAKEVGITASTMTDYMKLRSAPSFGVIQ 55 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +++ S ++ + + + + L +I V + Sbjct: 56 KLADYFGVKKSDIDTTFKEESTNSLPDAPDSLTQQIMDKVVHLTPPNQKI----VLRTSE 111 Query: 121 ELVRSIVSSEKKYRTIEE 138 EL+ S E K + E Sbjct: 112 ELLESQNEEETKINEVSE 129 >gi|153815095|ref|ZP_01967763.1| hypothetical protein RUMTOR_01319 [Ruminococcus torques ATCC 27756] gi|145847663|gb|EDK24581.1| hypothetical protein RUMTOR_01319 [Ruminococcus torques ATCC 27756] Length = 429 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 34/90 (37%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K++ N G+ I +R GM+Q+++ E LG+T + V K+E L + Sbjct: 36 EKRVKNKGGNKTGEFIARKRKERGMTQKEMAELLGVTNKAVSKWETSQGMPDIGILPELG 95 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMD 93 + L + + + D Sbjct: 96 KALGVTVDEILMGEQIEQEKRAETAVSDED 125 >gi|194467035|ref|ZP_03073022.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454071|gb|EDX42968.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 115 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 10/116 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESP 69 ++ +GK I RR L M+QE+L E ++ + K E+G + A L +++ L P Sbjct: 1 MNKTIGKNITTRRHQLKMTQEQLAELSNLSVNYISKIERGTTPNISAKTLYRLAKGLNVP 60 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + T ++I + + F++ + + + ++ + I++L++S Sbjct: 61 MENLLKEETTYTTNIGPYQQQLETFLNQ---------YPREEAEQLSKSILKLLKS 107 >gi|83593946|ref|YP_427698.1| transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576860|gb|ABC23411.1| Transcriptional Regulator, XRE family with Cupin sensor domain [Rhodospirillum rubrum ATCC 11170] Length = 248 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 30/59 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ +R R G+S ++L + G++ + + E G + + L I+ L+ P S F Sbjct: 68 VGENLRRLRTGRGLSLDRLAKLSGVSRAMLGQIELGRSAPTITVLWKIARALDVPFSAF 126 >gi|49484901|ref|YP_042125.1| hypothetical protein SAR2791 [Staphylococcus aureus subsp. aureus MRSA252] gi|221142464|ref|ZP_03566957.1| hypothetical protein SauraJ_12647 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|257424188|ref|ZP_05600617.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257426865|ref|ZP_05603267.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257429501|ref|ZP_05605888.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432148|ref|ZP_05608511.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257435109|ref|ZP_05611160.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|282907039|ref|ZP_06314887.1| hypothetical protein SDAG_00526 [Staphylococcus aureus subsp. aureus Btn1260] gi|282910017|ref|ZP_06317825.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912265|ref|ZP_06320061.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282912905|ref|ZP_06320697.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M899] gi|282922533|ref|ZP_06330223.1| hypothetical protein SARG_00185 [Staphylococcus aureus subsp. aureus C101] gi|283959476|ref|ZP_06376917.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus A017934/97] gi|293497958|ref|ZP_06665812.1| hypothetical protein SCAG_00531 [Staphylococcus aureus subsp. aureus 58-424] gi|293511548|ref|ZP_06670242.1| hypothetical protein SAZG_00185 [Staphylococcus aureus subsp. aureus M809] gi|293550157|ref|ZP_06672829.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M1015] gi|295429288|ref|ZP_06821910.1| hypothetical protein SIAG_01497 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589210|ref|ZP_06947851.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|304379939|ref|ZP_07362668.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|49243030|emb|CAG41764.1| putative membrane protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257273206|gb|EEV05308.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257276496|gb|EEV07947.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279982|gb|EEV10569.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257283027|gb|EEV13159.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257285705|gb|EEV15821.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M876] gi|269942291|emb|CBI50706.1| putative membrane protein [Staphylococcus aureus subsp. aureus TW20] gi|282314754|gb|EFB45140.1| hypothetical protein SARG_00185 [Staphylococcus aureus subsp. aureus C101] gi|282323005|gb|EFB53324.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M899] gi|282323961|gb|EFB54277.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282326083|gb|EFB56388.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329938|gb|EFB59459.1| hypothetical protein SDAG_00526 [Staphylococcus aureus subsp. aureus Btn1260] gi|283789068|gb|EFC27895.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus A017934/97] gi|290919204|gb|EFD96280.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M1015] gi|291096889|gb|EFE27147.1| hypothetical protein SCAG_00531 [Staphylococcus aureus subsp. aureus 58-424] gi|291465506|gb|EFF08038.1| hypothetical protein SAZG_00185 [Staphylococcus aureus subsp. aureus M809] gi|295127047|gb|EFG56691.1| hypothetical protein SIAG_01497 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577721|gb|EFH96434.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|302752583|gb|ADL66760.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341519|gb|EFM07429.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436868|gb|ADQ75939.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315195216|gb|EFU25604.1| hypothetical protein CGSSa00_04112 [Staphylococcus aureus subsp. aureus CGS00] gi|329315426|gb|AEB89839.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus T0131] Length = 189 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + ++ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCDLFNVTLDD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + DI ++ + + Sbjct: 61 LVKGTIPFAPDIKAQRSLNLW 81 >gi|331090843|ref|ZP_08339689.1| hypothetical protein HMPREF9477_00332 [Lachnospiraceae bacterium 2_1_46FAA] gi|330399702|gb|EGG79364.1| hypothetical protein HMPREF9477_00332 [Lachnospiraceae bacterium 2_1_46FAA] Length = 179 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 38/90 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R+ ++QE+L + ++ + + E+ + S L I + L + + Sbjct: 1 MQIGQKLKGLRIAKNLTQEELADRAELSKGFISQLERDLTSPSISTLVDILQCLGTSLKD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 FF +E+ + ++ Sbjct: 61 FFQEESDEQIVFGNEDYFEKVDTELKNTVE 90 >gi|322412543|gb|EFY03451.1| prophage Sa05, DNA-binding protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 109 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 40/107 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +SQ+++ L + + Q++E G +++ + Q +++ E +++ Sbjct: 2 NRLKELRQEKKLSQKEIALELQVPPRTYQRWENGESQIKPDKAQDLADYFEVTVAYLLGY 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 S + + + Y I + V I V Sbjct: 62 SNFKENSNLKDLLFHEIKALKEYKVLRVGYENYISENDVLDVIARYV 108 >gi|296159361|ref|ZP_06842186.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295890345|gb|EFG70138.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 191 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 38/94 (40%), Gaps = 2/94 (2%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K V +++G +IR R L + +++ + GI+ + + E+G + L I+ Sbjct: 6 NNKA--HVAVSIGSKIRALRQRLKRTLDEVAKTAGISKPFLSQVERGHATPSITSLVGIA 63 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 L + +F D S + F + Sbjct: 64 RALGVTVQYFVDTPTEDKSVRRGSDLKYFGFDGS 97 >gi|295094016|emb|CBK83107.1| Predicted transcriptional regulator [Coprococcus sp. ART55/1] Length = 73 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 27/68 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+ ++ R G++Q+KL + L + + YE + L +++ + I + Sbjct: 1 MAFGEVLKSLREERGVTQDKLAQYLHVNRATIAGYEVKGKKPRYETLIKLADYFDVSIDY 60 Query: 73 FFDVSPTV 80 Sbjct: 61 LVTGEENR 68 >gi|224503546|ref|ZP_03671853.1| hypothetical protein LmonFR_13737 [Listeria monocytogenes FSL R2-561] gi|313633537|gb|EFS00345.1| gp33 [Listeria seeligeri FSL N1-067] Length = 161 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 48/125 (38%), Gaps = 5/125 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 K++ R G S+ ++ + LG+ +E G L+ I+++ + + Sbjct: 6 KKLEYLRNSKGWSKVEVAKRLGMKASSTYSNWEYGNREPDIDTLKRIADLYGVSVDYLIG 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-QKIIELVRSIVSSEKKYR 134 +D + +D +T + L+ +I+ + R +K + + +K+ Sbjct: 66 RDKNNLADTIA---AHIDPNATEEELEEILAYIEEKQKEYRNEKEVNITEKAAEKDKEVN 122 Query: 135 TIEEE 139 EE Sbjct: 123 KFVEE 127 >gi|56421430|ref|YP_148748.1| hypothetical protein GK2895 [Geobacillus kaustophilus HTA426] gi|56381272|dbj|BAD77180.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 180 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++IR R ++ ++L E G++ + + E+G + + L+ I++ LE PI+ F Sbjct: 3 EIYRKIRDIRKQRDLTLKELSEKTGLSVSFLSQVERGTTSLAITSLKKIADALEVPITDF 62 Query: 74 FDVSPTVCSDISSEENNVMDFI-STPDGLQLNRYFI 108 F+ + E+ S+ + +L F Sbjct: 63 FENEANQNFVVKVEKRKPFRIEGSSAEYTRLAGNFN 98 >gi|16802162|ref|NP_463647.1| hypothetical protein lmo0114 [Listeria monocytogenes EGD-e] gi|46906354|ref|YP_012743.1| repressor protein [Listeria monocytogenes serotype 4b str. F2365] gi|47092250|ref|ZP_00230042.1| repressor protein, putative [Listeria monocytogenes str. 4b H7858] gi|47095185|ref|ZP_00232797.1| repressor protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|116871527|ref|YP_848308.1| bacteriophage-type repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|217965783|ref|YP_002351461.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23] gi|224498185|ref|ZP_03666534.1| helix-turn-helix domain protein [Listeria monocytogenes Finland 1988] gi|224502962|ref|ZP_03671269.1| helix-turn-helix domain protein [Listeria monocytogenes FSL R2-561] gi|226222753|ref|YP_002756860.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes Clip81459] gi|254827546|ref|ZP_05232233.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254832362|ref|ZP_05237017.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes 10403S] gi|254899558|ref|ZP_05259482.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes J0161] gi|254913239|ref|ZP_05263251.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937620|ref|ZP_05269317.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|254991791|ref|ZP_05273981.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J2-064] gi|255016940|ref|ZP_05289066.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL F2-515] gi|255022366|ref|ZP_05294352.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J1-208] gi|255025309|ref|ZP_05297295.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J2-003] gi|255028080|ref|ZP_05300031.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes LO28] gi|255519835|ref|ZP_05387072.1| repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes FSL J1-175] gi|284803147|ref|YP_003415012.1| hypothetical protein LM5578_2904 [Listeria monocytogenes 08-5578] gi|284996288|ref|YP_003418056.1| hypothetical protein LM5923_2853 [Listeria monocytogenes 08-5923] gi|12054764|emb|CAC20620.1| AX protein [Listeria monocytogenes] gi|16409473|emb|CAC98329.1| lmo0114 [Listeria monocytogenes EGD-e] gi|46879618|gb|AAT02920.1| putative prophage LambdaLm01, repressor protein [Listeria monocytogenes serotype 4b str. F2365] gi|47016530|gb|EAL07451.1| repressor protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|47019452|gb|EAL10193.1| repressor protein, putative [Listeria monocytogenes str. 4b H7858] gi|116740405|emb|CAK19525.1| bacteriophage-type repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|217335053|gb|ACK40847.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23] gi|225875215|emb|CAS03909.1| Putative repressor C1 from lactococcal bacteriophage Tuc2009 [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599922|gb|EEW13247.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258610220|gb|EEW22828.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284058709|gb|ADB69650.1| hypothetical protein LM5578_2904 [Listeria monocytogenes 08-5578] gi|284061755|gb|ADB72694.1| hypothetical protein LM5923_2853 [Listeria monocytogenes 08-5923] gi|293591239|gb|EFF99573.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|307569672|emb|CAR82851.1| repressor protein, putative [Listeria monocytogenes L99] gi|313611579|gb|EFR86184.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria monocytogenes FSL F2-208] gi|328468450|gb|EGF39456.1| hypothetical protein LM1816_04172 [Listeria monocytogenes 1816] gi|328472713|gb|EGF43568.1| hypothetical protein LM220_04442 [Listeria monocytogenes 220] gi|332310528|gb|EGJ23623.1| Bacteriophage-type repressor [Listeria monocytogenes str. Scott A] Length = 111 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 1/107 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G++QE L E L T Q + +YE G + L ++++ + Sbjct: 3 LNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRL 62 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 FF + + + +D T + ++ +I++ R Sbjct: 63 DDFFPERNLPPVDERLVTIAAHIDDDVTEEEMRDILAYIEMKKKLHR 109 >gi|330830558|ref|YP_004393510.1| Cro/CI family transcriptional regulator [Aeromonas veronii B565] gi|328805694|gb|AEB50893.1| Cro/CI family transcriptional regulator [Aeromonas veronii B565] Length = 177 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 6/110 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R LG+SQ + E G+T + E+ + LQ + + P+S FF Sbjct: 2 GERLAAVRHQLGLSQRRAAELSGLTHGAICMIEQDKVSPSVASLQKLLTIYGLPLSRFFA 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + ++ + + +++ S L+L + R+++ ++ + Sbjct: 62 EEESRTPEVVIKADQLIELGSQGVSLKLVH------NGNNRRQLGFMLET 105 >gi|307947017|ref|ZP_07662352.1| transcriptional regulator [Roseibium sp. TrichSKD4] gi|307770681|gb|EFO29907.1| transcriptional regulator [Roseibium sp. TrichSKD4] Length = 207 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 8/92 (8%) Query: 1 MVGNKKIPNPV--------DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 M + P+ V ++ +G+++R R G++ +L + ++ + K E G Sbjct: 1 MTEFFQDPHSVREEREKVLEVAIGRKVRSFRKQRGITVAELSKLTDLSVGMLSKIENGNT 60 Query: 53 RVGASRLQHISEVLESPISFFFDVSPTVCSDI 84 + LQ++S L P++ F I Sbjct: 61 SPSLTTLQNLSRALSVPLTALFKGYEERREAI 92 >gi|256811069|ref|YP_003128438.1| XRE family transcriptional regulator [Methanocaldococcus fervens AG86] gi|256794269|gb|ACV24938.1| transcriptional regulator, XRE family [Methanocaldococcus fervens AG86] Length = 64 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G++QE+L + LG+T Q + EKG I + + F++ Sbjct: 3 NRLRELRKEHGITQEELAKALGVTRQTIIAIEKGKYDPSLKLALKIVKFFGVKVEDVFEL 62 Query: 77 SP 78 Sbjct: 63 EE 64 >gi|228475837|ref|ZP_04060551.1| DNA-binding protein [Staphylococcus hominis SK119] gi|314937266|ref|ZP_07844610.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80] gi|228270113|gb|EEK11573.1| DNA-binding protein [Staphylococcus hominis SK119] gi|313654620|gb|EFS18368.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80] Length = 118 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 36/89 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + I+ R + SQ++L + L ++ Q V K+E G N L +S++ + Sbjct: 1 MELANVIKKYRKLNNWSQDELADILNVSRQSVSKWESGKNYPSLDILVVMSDLFGVTLDQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 + I + + + + P + Sbjct: 61 LVKGDIELKKQILNGDYHDGAYKRRPTTM 89 >gi|284031797|ref|YP_003381728.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811090|gb|ADB32929.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 198 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 3/79 (3%) Query: 7 IPNPVDI---NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + + +D VG R++ R ++ +L + GI+ + + E G+ R +L ++ Sbjct: 1 MDDSLDRTLGAVGARLKHLRQRRTITLVELADQTGISISTLSRLEAGLRRPTLEQLLPLA 60 Query: 64 EVLESPISFFFDVSPTVCS 82 V + D PT Sbjct: 61 RVHGVTLDELVDAPPTGNP 79 >gi|183600898|ref|ZP_02962391.1| hypothetical protein PROSTU_04505 [Providencia stuartii ATCC 25827] gi|188019224|gb|EDU57264.1| hypothetical protein PROSTU_04505 [Providencia stuartii ATCC 25827] Length = 95 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Query: 1 MVGNKKIP-NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 MV +K + ++ +G+ IR+ R+ G++ +LG+ +G++ QQ+ +YE+G + + S Sbjct: 1 MVSQEKEHFDVINSEIGEFIRMIRIKKGLTGAELGKLIGVSQQQISRYERGYHTLSLSDF 60 Query: 60 QHISEVLESPISFF 73 I V+ F Sbjct: 61 TFILSVMNVSFLDF 74 >gi|217961397|ref|YP_002339965.1| prophage LambdaBa02, repressor protein [Bacillus cereus AH187] gi|229140643|ref|ZP_04269194.1| Prophage LambdaBa02, repressor protein [Bacillus cereus BDRD-ST26] gi|217063695|gb|ACJ77945.1| prophage LambdaBa02, repressor protein [Bacillus cereus AH187] gi|228642816|gb|EEK99096.1| Prophage LambdaBa02, repressor protein [Bacillus cereus BDRD-ST26] Length = 122 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 15/126 (11%) Query: 15 VGKRIRLRRMILGMSQ--------EKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +G+RI+L R G++Q EK+ +T + YE G + L IS+VL Sbjct: 4 LGQRIKLSRKKRGLTQDALALKIKEKMDTETKVTKTTISNYETGYSSPSNETLVIISDVL 63 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + + S + +F +L ++ K + +++++++ Sbjct: 64 DVSVDYLLGRSDDPELNAVQFTELRKEF------NELIDMLEKMPKEK-QDMLLDMMKAA 116 Query: 127 VSSEKK 132 V KK Sbjct: 117 VGHNKK 122 >gi|59801396|ref|YP_208108.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|239998753|ref|ZP_04718677.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae 35/02] gi|240014330|ref|ZP_04721243.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae DGI18] gi|240016763|ref|ZP_04723303.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae FA6140] gi|240080961|ref|ZP_04725504.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae FA19] gi|240112680|ref|ZP_04727170.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae MS11] gi|240115427|ref|ZP_04729489.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae PID18] gi|240117722|ref|ZP_04731784.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae PID1] gi|240121893|ref|ZP_04734855.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae PID24-1] gi|240123275|ref|ZP_04736231.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae PID332] gi|240125529|ref|ZP_04738415.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae SK-92-679] gi|254493540|ref|ZP_05106711.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|260440761|ref|ZP_05794577.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae DGI2] gi|268594599|ref|ZP_06128766.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268597075|ref|ZP_06131242.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268598746|ref|ZP_06132913.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268601105|ref|ZP_06135272.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268603423|ref|ZP_06137590.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268681903|ref|ZP_06148765.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268684119|ref|ZP_06150981.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|291044074|ref|ZP_06569790.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|293399253|ref|ZP_06643418.1| phage repressor [Neisseria gonorrhoeae F62] gi|59718291|gb|AAW89696.1| putative phage repressor, putative phage associated protein [Neisseria gonorrhoeae FA 1090] gi|226512580|gb|EEH61925.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|268547988|gb|EEZ43406.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268550863|gb|EEZ45882.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268582877|gb|EEZ47553.1| transcriptional regulator [Neisseria gonorrhoeae MS11] gi|268585236|gb|EEZ49912.1| transcriptional regulator [Neisseria gonorrhoeae PID18] gi|268587554|gb|EEZ52230.1| transcriptional regulator [Neisseria gonorrhoeae PID1] gi|268622187|gb|EEZ54587.1| transcriptional regulator [Neisseria gonorrhoeae PID332] gi|268624403|gb|EEZ56803.1| transcriptional regulator [Neisseria gonorrhoeae SK-92-679] gi|291012537|gb|EFE04526.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|291610667|gb|EFF39777.1| phage repressor [Neisseria gonorrhoeae F62] Length = 126 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 9/122 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR++ R+ LG++Q + E G + + K+E+G NR + +L S+ + I + Sbjct: 8 GKRLKEERIKLGLNQAEAAEKCGFSREMWGKWERGENRPSSEKLFSFSK-IGIDIDYVMH 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + SE + + +L F Q+ R+++ + + EKK +T Sbjct: 67 GRRGETAAMPSES-------LSAEEKELLALFRQLGSGS-RKELADYAAFKLVVEKKAQT 118 Query: 136 IE 137 Sbjct: 119 AL 120 >gi|134298752|ref|YP_001112248.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051452|gb|ABO49423.1| putative transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 218 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RIR+ R G+S +L G+ + E G + ++ I L ++ Sbjct: 1 MDIGARIRILRTQQGLSMNELSRRSGVGQSSLSYIESGQRQPTFDVIERICSGLGLSVAE 60 Query: 73 FFDV 76 FF+ Sbjct: 61 FFNE 64 >gi|219666089|ref|YP_002456524.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219536349|gb|ACL18088.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 68 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++R+ R G++Q++LGE +G++ Q + E G ++++ + I F Sbjct: 3 NKVRILREEWGLTQKELGEKVGVSRQAINAIETGKFNPSLWLAYDLAKLFKVSIEELF 60 >gi|325695326|gb|EGD37226.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] gi|332365308|gb|EGJ43071.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 168 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 31/81 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + D Sbjct: 61 LLLEDSNKPEIKPVLSEDEKD 81 >gi|158320882|ref|YP_001513389.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141081|gb|ABW19393.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 125 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 9/124 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R M+Q++L + LG+ + YE G A L I+ +L + + Sbjct: 9 ERLKELRKENNMTQQELADKLGLVRTAIANYETGRTVPDAETLNLIANILSTTTDYLL-- 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + ST + R ++ +K+IEL + + +K+ I Sbjct: 67 -----GRANYIPKEKNKPSSTDIISEDIRKLSPESQEEL-KKLIELYK-MRDMQKRNDEI 119 Query: 137 EEEC 140 +E Sbjct: 120 SDEL 123 >gi|329729091|gb|EGG65502.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] Length = 175 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 41/113 (36%), Gaps = 5/113 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G I+ R ++Q +L L I+ + E +G ++ I++ L +++ Sbjct: 1 MNIGDNIKKIRKEKKVTQSELASSLKISQSYLSDLENNRKNLGIKTIEKIAKKLNVSVAY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + + E N + + + +++L++ Sbjct: 61 LTSGNKMLSDLTEDEINEQFSELRFKLNKDNTNRELNLKSN-----LLDLIQR 108 >gi|300117591|ref|ZP_07055374.1| DNA-binding protein [Bacillus cereus SJ1] gi|298725026|gb|EFI65685.1| DNA-binding protein [Bacillus cereus SJ1] Length = 181 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKRADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|253730391|ref|ZP_04864556.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733848|ref|ZP_04868013.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|253725871|gb|EES94600.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728151|gb|EES96880.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|329732444|gb|EGG68794.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21193] Length = 189 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + DI ++ + + Sbjct: 61 LVKGTIPFVPDIKAQRSLNLW 81 >gi|256024105|ref|ZP_05437970.1| Repressor protein C2 [Escherichia sp. 4_1_40B] Length = 208 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 34/64 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R + G SQ++LG+ G++ V +EK +N G L +++ + I + Sbjct: 4 VGQRIKALRRVTGTSQKELGKFCGVSDVAVGYWEKDINTPGGEALSKLAKFFNTSIDYIL 63 Query: 75 DVSP 78 + Sbjct: 64 YGAE 67 >gi|183597291|ref|ZP_02958784.1| hypothetical protein PROSTU_00538 [Providencia stuartii ATCC 25827] gi|188023308|gb|EDU61348.1| hypothetical protein PROSTU_00538 [Providencia stuartii ATCC 25827] Length = 185 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + ++I +G+++RL R +S +L GI+ + K E G + L+ I+ L Sbjct: 1 MDKKINIKIGQKVRLLRQARNLSLNELARLSGISKAALSKLESGDSNPRVDTLEAIAIAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDF 94 P+S F + D+ Sbjct: 61 RFPLSDLFTLQHEAYPYFVKSAPQQGDY 88 >gi|169335357|ref|ZP_02862550.1| hypothetical protein ANASTE_01769 [Anaerofustis stercorihominis DSM 17244] gi|169258095|gb|EDS72061.1| hypothetical protein ANASTE_01769 [Anaerofustis stercorihominis DSM 17244] Length = 138 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K ++ R G++QE+L E +G++ Q + K+EKG + + +S V I Sbjct: 1 MIYKNLKDLRKNNGLTQEQLSEKIGVSRQAIGKWEKGESIPDLYSILELSNVYSITIDTL 60 >gi|167912242|ref|ZP_02499333.1| DNA-binding protein [Burkholderia pseudomallei 112] Length = 195 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 4/91 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DINQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVS 61 Query: 70 ISFFFDVS----PTVCSDISSEENNVMDFIS 96 ++ F+ ++E+ D S Sbjct: 62 LASLFEDDRAARAASPLSRATEQPVWKDPAS 92 >gi|154503082|ref|ZP_02040142.1| hypothetical protein RUMGNA_00905 [Ruminococcus gnavus ATCC 29149] gi|153796323|gb|EDN78743.1| hypothetical protein RUMGNA_00905 [Ruminococcus gnavus ATCC 29149] Length = 77 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KRIR R ++Q+ +GE L + + YE G + L ++E + + + D+ Sbjct: 3 KRIRDLREDRDLTQKNMGEILNCSQRIYSNYECGDVDIPTQILIKLAEFHNTSVDYLLDL 62 Query: 77 SPTVCS 82 + Sbjct: 63 TDDKRP 68 >gi|21911121|ref|NP_665389.1| hypothetical protein SpyM3_1585 [Streptococcus pyogenes MGAS315] gi|28895194|ref|NP_801544.1| hypothetical protein SPs0282 [Streptococcus pyogenes SSI-1] gi|21905331|gb|AAM80192.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315] gi|28810439|dbj|BAC63377.1| hypothetical protein [Streptococcus pyogenes SSI-1] Length = 195 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++ R +SQE+L E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQMIRYRKQQALSQEELVEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + T + L Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTKVMVTLM 92 >gi|326388802|ref|ZP_08210386.1| conserved domain protein [Novosphingobium nitrogenifigens DSM 19370] gi|326206712|gb|EGD57545.1| conserved domain protein [Novosphingobium nitrogenifigens DSM 19370] Length = 395 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+ R G+S L + +G++ Q + KYE + +++ L+ P +F Sbjct: 8 FVGARLTEARKARGISATDLADMVGVSVQSISKYENDRQSPKLDVVHNLAATLKFPHDYF 67 Query: 74 FDVSPTVCS 82 +P Sbjct: 68 LRPTPERDE 76 >gi|326204395|ref|ZP_08194253.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325985427|gb|EGD46265.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 134 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 46/117 (39%), Gaps = 5/117 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG ++ R ++Q+++ + L I Q YE+ + + L +++ + Sbjct: 1 MVGDILKTIREEKKITQDQIAQLLNIKRQTYSSYERNKSLPDINILSKLADYFNVSTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFIS--TPDGLQLNRYFIQID---DVKVRQKIIELVRS 125 S + D + I + D QL + ++ ++R +I ++R+ Sbjct: 61 LGRSDIMNYDEYKDLLISTTKIEGLSDDEKQLLNSYRKLSFEFKAEIRGEIKGILRT 117 >gi|161620977|ref|YP_001594863.1| hypothetical protein BCAN_B0944 [Brucella canis ATCC 23365] gi|254703244|ref|ZP_05165072.1| hypothetical protein Bsuib36_04804 [Brucella suis bv. 3 str. 686] gi|260567822|ref|ZP_05838291.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|261753875|ref|ZP_05997584.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|161337788|gb|ABX64092.1| Hypothetical protein BCAN_B0944 [Brucella canis ATCC 23365] gi|260154487|gb|EEW89568.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|261743628|gb|EEY31554.1| transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 182 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+R RM +SQ +L + G+T + E + L+ I + + + Sbjct: 1 MSIDIGGRLRYVRMRQNLSQRELAKRAGVTNSTISLIEANQSNPSVGALKRILDGIPIGM 60 Query: 71 SFFFDVSPTVC 81 FF + P Sbjct: 61 VEFFALEPDAP 71 >gi|148988514|ref|ZP_01819961.1| serine hydroxymethyltransferase [Streptococcus pneumoniae SP6-BS73] gi|147926195|gb|EDK77269.1| serine hydroxymethyltransferase [Streptococcus pneumoniae SP6-BS73] Length = 96 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 1/89 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ RR L MSQ +L E + Q+ + E G GA L +S+ L+ + +FF+ Sbjct: 8 RLKNRRKELKMSQRELTEGI-CKQGQISRLENGEFTPGADFLYALSKKLKVSVDYFFNEQ 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRY 106 D SE + T + +Y Sbjct: 67 IVEEIDELSEFKKLAQTFITNRNYESLKY 95 >gi|299533549|ref|ZP_07046925.1| transcriptional regulator, XRE family protein [Comamonas testosteroni S44] gi|298718455|gb|EFI59436.1| transcriptional regulator, XRE family protein [Comamonas testosteroni S44] Length = 131 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 15/132 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R LGMSQ G T Q + +E G ++ +S + + Sbjct: 1 MTLGERLREERNRLGMSQPAFAALAGTTKQTLFSWESGKTAPDGFQMTALSA-HGVDLLY 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS---- 128 T + + D L+L + + RQ +I + + Sbjct: 60 VLAGHRTPAVHPAEAL--------SDDELRLLHGYRSC-NADGRQHLIRSAELLSAAHAM 110 Query: 129 -SEKKYRTIEEE 139 +E + + +++ Sbjct: 111 SAEDRKQALQDR 122 >gi|325678268|ref|ZP_08157896.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110031|gb|EGC04219.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 199 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R+ G++Q++L + + ++ + V K+E G S L ++E+ ++ I + Sbjct: 7 GALIRKLRVGKGLTQKQLADMINVSDKAVSKWECGGGCPDISLLSALAEIFDTDIQVLLN 66 Query: 76 VSPTVCSDISSE 87 + + Sbjct: 67 GRADKNDKENGD 78 >gi|268686373|ref|ZP_06153235.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] gi|268626657|gb|EEZ59057.1| transcriptional regulator [Neisseria gonorrhoeae SK-93-1035] Length = 138 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 9/122 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR++ R+ LG++Q + E G + + K+E+G NR + +L S+ + I + Sbjct: 20 GKRLKEERIKLGLNQAEAAEKCGFSREMWGKWERGENRPSSEKLFSFSK-IGIDIDYVMH 78 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + SE + + +L F Q+ R+++ + + EKK +T Sbjct: 79 GRRGETAAMPSES-------LSAEEKELLALFRQLGSGS-RKELADYAAFKLVVEKKAQT 130 Query: 136 IE 137 Sbjct: 131 AL 132 >gi|228914405|ref|ZP_04078019.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228845250|gb|EEM90287.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 181 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|210634365|ref|ZP_03298091.1| hypothetical protein COLSTE_02013 [Collinsella stercoris DSM 13279] gi|210158844|gb|EEA89815.1| hypothetical protein COLSTE_02013 [Collinsella stercoris DSM 13279] Length = 169 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 37/103 (35%), Gaps = 8/103 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K + R+ R G SQE+L + LG++ Q + K+E R + Sbjct: 38 MDEATKFAD--------RLLDLRRKAGYSQEQLADLLGVSRQAISKWEGAQGRPEVDNVV 89 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 +S++ F S +V S + +S L Sbjct: 90 KLSQIYRVSTDFILTGSASVPSVCEAPSAPAPRELSREYRFAL 132 >gi|110800489|ref|YP_695467.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110675136|gb|ABG84123.1| DNA-binding protein [Clostridium perfringens ATCC 13124] Length = 180 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R ++Q+ L E GI+ + E ++ ++ L+ + Sbjct: 1 MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALATSLKLDLKS 60 Query: 73 FFDV 76 FFD Sbjct: 61 FFDD 64 >gi|19746767|ref|NP_607903.1| hypothetical protein spyM18_1900 [Streptococcus pyogenes MGAS8232] gi|139473168|ref|YP_001127883.1| DNA-binding membrane protein [Streptococcus pyogenes str. Manfredo] gi|19748999|gb|AAL98402.1| hypothetical protein spyM18_1900 [Streptococcus pyogenes MGAS8232] gi|134271414|emb|CAM29634.1| putative DNA-binding membrane protein [Streptococcus pyogenes str. Manfredo] Length = 195 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++ R +SQE+L E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQMIRYRKQQALSQEELVEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + T + L Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTKVMVTLM 92 >gi|89896705|ref|YP_520192.1| hypothetical protein DSY3959 [Desulfitobacterium hafniense Y51] gi|89336153|dbj|BAE85748.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 106 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 11/114 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + +R R G++Q++L + LG+ + +EKG N + S L +I LE + + + Sbjct: 3 ENLRKYRERKGITQKQLADHLGVRDNTISSWEKGTNSIDISTLLNICNFLEINLDDIYGI 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S S + E+ L L F ++ + K++ +V + + Sbjct: 63 SDKKISPVELTEDE----------LALISNFRKLSHDN-KMKVLGMVELKAAED 105 >gi|315304464|ref|ZP_07874746.1| DNA-binding protein [Listeria ivanovii FSL F6-596] gi|313627167|gb|EFR96018.1| DNA-binding protein [Listeria ivanovii FSL F6-596] Length = 118 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 49/123 (39%), Gaps = 9/123 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R ++Q++L +G T + KYE +R L ++E+L + F Sbjct: 4 LEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDF 63 Query: 73 FFDV-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 D + + + + + L+L + ++ + +++ I + + Sbjct: 64 LLDDVAGLREKNSVNAFPLIGNPELEKWYLELPYTYS--------EEELLMLKRIADAIE 115 Query: 132 KYR 134 + Sbjct: 116 NKK 118 >gi|91778751|ref|YP_553959.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91691411|gb|ABE34609.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 190 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 31/89 (34%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +D + +R+R R S + L G++ + + E AS L + Sbjct: 9 NAIDRRIAQRLRALRAERNWSLDDLARLSGVSRATLSRLENAAVSPTASVLGKLCVAYGL 68 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFIST 97 P+S + + + + ++ Sbjct: 69 PMSRLMHMVEEDFAPLVPRAAQPLWTDAS 97 >gi|21284353|ref|NP_647441.1| hypothetical protein MW2624 [Staphylococcus aureus subsp. aureus MW2] gi|49487483|ref|YP_044704.1| hypothetical protein SAS2588 [Staphylococcus aureus subsp. aureus MSSA476] gi|57651100|ref|YP_187518.1| transcriptional regulator, putative [Staphylococcus aureus subsp. aureus COL] gi|87161562|ref|YP_495274.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196661|ref|YP_501492.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222818|ref|YP_001333640.1| hypothetical protein NWMN_2606 [Staphylococcus aureus subsp. aureus str. Newman] gi|258451376|ref|ZP_05699407.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|262050429|ref|ZP_06023259.1| hypothetical protein SAD30_1606 [Staphylococcus aureus D30] gi|262053275|ref|ZP_06025407.1| hypothetical protein SA930_0618 [Staphylococcus aureus 930918-3] gi|282920710|ref|ZP_06328429.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|284023029|ref|ZP_06377427.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|294849819|ref|ZP_06790559.1| hypothetical protein SKAG_01908 [Staphylococcus aureus A9754] gi|297209460|ref|ZP_06925858.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911484|ref|ZP_07128933.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|21205797|dbj|BAB96489.1| MW2624 [Staphylococcus aureus subsp. aureus MW2] gi|49245926|emb|CAG44407.1| putative membrane protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285286|gb|AAW37380.1| transcriptional regulator, putative [Staphylococcus aureus subsp. aureus COL] gi|87127536|gb|ABD22050.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87204219|gb|ABD32029.1| Helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150375618|dbj|BAF68878.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|257860906|gb|EEV83723.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|259158829|gb|EEW43941.1| hypothetical protein SA930_0618 [Staphylococcus aureus 930918-3] gi|259161476|gb|EEW46088.1| hypothetical protein SAD30_1606 [Staphylococcus aureus D30] gi|282594118|gb|EFB99106.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|294823367|gb|EFG39796.1| hypothetical protein SKAG_01908 [Staphylococcus aureus A9754] gi|296885921|gb|EFH24856.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887663|gb|EFK82859.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|315197909|gb|EFU28242.1| hypothetical protein CGSSa01_15080 [Staphylococcus aureus subsp. aureus CGS01] gi|320141409|gb|EFW33252.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320144391|gb|EFW36156.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329731810|gb|EGG68170.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21189] Length = 189 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + DI ++ + + Sbjct: 61 LVKGTIPFVPDIKAQRSLNLW 81 >gi|148548690|ref|YP_001268792.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512748|gb|ABQ79608.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 104 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 27/72 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R R + G++Q +L E G + + ++E + ++VL F Sbjct: 5 ALGIALRRYRKLAGLTQAQLAERTGFDPKTISRFETNTYTPSIDAIMAFAQVLGVKPKDF 64 Query: 74 FDVSPTVCSDIS 85 F + Sbjct: 65 FAEPDDEEEQRA 76 >gi|75758326|ref|ZP_00738450.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74494188|gb|EAO57280.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 145 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 38/82 (46%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++N+G +++ R SQE + +G+T Q V K+E + L +SE+ E I Sbjct: 3 NMNLGSQLKRFRESKSFSQEDVARKVGVTRQAVYKWESNKSYPDIDNLILLSELYEVTID 62 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 S +++ ++ + + Sbjct: 63 ELIKGSEDAREELNKKDKDECE 84 >gi|325528329|gb|EGD05485.1| putative DNA-binding protein [Burkholderia sp. TJI49] Length = 109 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 5/79 (6%) Query: 1 MVGNKKIPN-----PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG 55 M + IP+ P+ I +GKRI+ R SQE L + + E+G+ Sbjct: 1 MTAKRSIPSATRPAPISIALGKRIKECRHAAEKSQETLAFEALVDRTYISAIERGIANPS 60 Query: 56 ASRLQHISEVLESPISFFF 74 L +I L ++ F Sbjct: 61 IETLANICYSLNVTLAELF 79 >gi|319743893|gb|EFV96285.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 150 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 8/131 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R+ ++Q +L + L T Q + +YEKG + L +S++ E I Sbjct: 3 LNQYVGNKIKQFRLEKKLTQTQLADLLDTTKQTISRYEKGDRKANQDVLFALSDLFEKTI 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII---ELVRSIV 127 FF + +T ++ ++ + + I +L+ Sbjct: 63 DDFF-----PPITKETAVQLQQQSSTTEINNKVALLDKKLKEPRHSDWISYGDKLLEQQN 117 Query: 128 SSEKKYRTIEE 138 + E T+ E Sbjct: 118 TVENSKNTVVE 128 >gi|296156274|ref|ZP_06839113.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295893780|gb|EFG73559.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 91 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 27/82 (32%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G +R R G SQE+L E G+ V + E+G + ++ + PI Sbjct: 6 REFGAAVRRLREARGWSQEQLAEYAGLNRSYVGEVERGSAIASIVTVDKLARAFQVPIEH 65 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 S +D Sbjct: 66 LLTPSSNASGIAVLAHAAFVDP 87 >gi|266625750|ref|ZP_06118685.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288862345|gb|EFC94643.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 68 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 29/67 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G + R G+SQE + E LG++ Q + K+E + + ++ + + Sbjct: 1 MSLGNNLFNARKGKGLSQEVVAEKLGVSRQTISKWETDETLPDIQQSKKLAVLYGLTLDE 60 Query: 73 FFDVSPT 79 + Sbjct: 61 LIEFDVD 67 >gi|253682587|ref|ZP_04863384.1| helix-turn-helix domain protein [Clostridium botulinum D str. 1873] gi|253562299|gb|EES91751.1| helix-turn-helix domain protein [Clostridium botulinum D str. 1873] Length = 184 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 40/101 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R MS + + + G++ + + E+G + S L I+ L+ S F Sbjct: 8 IGINLKTIRTQKNMSLDTVSKLTGVSKAMLGQIERGESNPTVSTLWKIATGLKVSFSSFI 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 D S I ++ + + + L F + +V Sbjct: 68 DDSNENLKIIYQDKIDPIIEDNNRMKLYPIFPFDAKKNFEV 108 >gi|222152359|ref|YP_002561534.1| DNA-binding protein [Streptococcus uberis 0140J] gi|222113170|emb|CAR40616.1| DNA-binding protein [Streptococcus uberis 0140J] Length = 112 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 1/105 (0%) Query: 7 IPNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + N + + KRIRL R+ G++QE+L E + V K E + + L+ + Sbjct: 1 MENKILQEYISKRIRLLRLEKGLTQEQLEEKADLGTNYVYKLENQSTNIKVNTLEKVMTA 60 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 L+ FFD+S + S+ + +S+ ++ + + Sbjct: 61 LDVDFEEFFDISLVEQNSDLSDLMVQIKELSSGQQDRVIKALSTL 105 >gi|153932210|ref|YP_001385236.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152928254|gb|ABS33754.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] Length = 92 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 32/75 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R ++QE+LG+ L ++ Q + YE + L ++ + + + Sbjct: 3 GDRLKELREEKQLTQEELGKFLNVSRQAISSYESEETEPSINNLIKLANIFNISLDYLLG 62 Query: 76 VSPTVCSDISSEENN 90 + + ++ N Sbjct: 63 RTKERYNLNLEDKKN 77 >gi|82752284|ref|YP_418025.1| hypothetical protein SAB2582c [Staphylococcus aureus RF122] gi|82657815|emb|CAI82270.1| probable membrane protein [Staphylococcus aureus RF122] Length = 189 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 73 FFDVSPTVCSDI 84 + DI Sbjct: 61 LVKGTIPFVPDI 72 >gi|302670002|ref|YP_003829962.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302394475|gb|ADL33380.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 174 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R +SQ +L LG T + VQKYE G L I+ L + Sbjct: 7 IGNRIKEARKAQHLSQTELANRLGKTMRTVQKYESGEIEPSIGVLNEIANNLNISPAEL 65 >gi|262066094|ref|ZP_06025706.1| transcriptional regulator, MerR family [Fusobacterium periodonticum ATCC 33693] gi|291380189|gb|EFE87707.1| transcriptional regulator, MerR family [Fusobacterium periodonticum ATCC 33693] Length = 184 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 38/85 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R GMS +L + ++ + + E+G L+ I+ L+ +++ Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + +I + + +I + Sbjct: 61 LIEDEEDDIRNIEHVKAANVRYIES 85 >gi|228994857|ref|ZP_04154652.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] gi|228764882|gb|EEM13641.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] Length = 64 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R+ GM+Q +L + ++ Q + EKG I + L ++ F Sbjct: 4 KVKRIRLEKGMTQGELAKLTNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLFWEE 63 Query: 78 P 78 Sbjct: 64 D 64 >gi|153954538|ref|YP_001395303.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347396|gb|EDK33932.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 89 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++I RMI G +Q + E I + + KYE G+++ L+ I + I +F Sbjct: 30 IAQKIYKLRMIKGYTQREFAEVCSIGYSSLCKYEIGLSKPKHVNLEKICQTFNMSIDYFL 89 >gi|116628413|ref|YP_821032.1| XRE family transcriptional regulator [Streptococcus thermophilus LMD-9] gi|116101690|gb|ABJ66836.1| transcriptional regulator, XRE family [Streptococcus thermophilus LMD-9] Length = 289 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ RR L MSQ++L E + Q+ + E G G+ L +S L + +FF Sbjct: 5 LASRIKNRRKELKMSQKELAEGI-CKQGQISRLENGEYIPGSVLLHELSRKLNVSMDYFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 D + S+ + + T + Y +++ Sbjct: 64 DEQISSGSNKLNNFKKLSKTFITQRDYESLNYIYELEKE 102 >gi|94995013|ref|YP_603111.1| transcriptional regulator [Streptococcus pyogenes MGAS10750] gi|94548521|gb|ABF38567.1| Transcriptional regulator [Streptococcus pyogenes MGAS10750] Length = 195 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++ R +SQE+L E + ++ Q + +E L +S++ + + Sbjct: 1 MEIGQQMIRYRKQQTLSQEELVEKVYVSRQSISNWENDKTYPDIHSLLLLSQIFQVSLDQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + T + L Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTKVMVTLM 92 >gi|296156536|ref|ZP_06839374.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295893135|gb|EFG72915.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 183 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 37/94 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I V R++ R G+SQ +L + G+T + E+ L+ + E + + Sbjct: 1 MSIEVATRLQYIRKKHGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + FF V + S ++ + + L Sbjct: 61 AEFFTFEVEVERSVVSRRADMPNLGNESIEFYLA 94 >gi|16799238|ref|NP_469506.1| hypothetical protein lin0161 [Listeria innocua Clip11262] gi|16412580|emb|CAC95394.1| lin0161 [Listeria innocua Clip11262] Length = 117 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 1/107 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G++QE L E L T Q + +YE G + L ++++ + Sbjct: 9 LNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRL 68 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 FF + + + S +D T + ++ +I++ R Sbjct: 69 DDFFPERNLPPVDERSVTIAAHIDDDVTEEEMRDILAYIEMKKKLHR 115 >gi|150018771|ref|YP_001311025.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905236|gb|ABR36069.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 117 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 49/112 (43%), Gaps = 3/112 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +++L R ++Q+KL E +G++ + E L ++ L + + + Sbjct: 1 MLGDKVKLLRKERKITQQKLAEAIGVSQSTIGMIEGNRQGASNDTLIKLANTLNTTVDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + ++ + + D D ++ + D K ++K+++++RS Sbjct: 61 LSDNIE---ELDFPDKRISDPGFGDDDIRRIERARRKMDPKNKEKMMKILRS 109 >gi|332655055|ref|ZP_08420796.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332515915|gb|EGJ45524.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 101 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKRI+ R G++QE+L E LG+ + + E G + + E+ + + F Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTLDYIFL 98 Query: 76 VSP 78 Sbjct: 99 GRE 101 >gi|326791080|ref|YP_004308901.1| hypothetical protein Clole_1987 [Clostridium lentocellum DSM 5427] gi|326541844|gb|ADZ83703.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 194 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ IR R+ G++Q++L + + I+ + V K+E+G+ S L +S +L+ I Sbjct: 6 VGELIRSLRIECGLTQKQLADAMNISDKTVSKWERGLGCPDISLLPELSILLKVNIEKIL 65 Query: 75 DVS 77 Sbjct: 66 SGD 68 >gi|228940374|ref|ZP_04102945.1| hypothetical protein bthur0008_30230 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973291|ref|ZP_04133880.1| hypothetical protein bthur0003_30510 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979854|ref|ZP_04140175.1| hypothetical protein bthur0002_30270 [Bacillus thuringiensis Bt407] gi|228779869|gb|EEM28115.1| hypothetical protein bthur0002_30270 [Bacillus thuringiensis Bt407] gi|228786487|gb|EEM34477.1| hypothetical protein bthur0003_30510 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819500|gb|EEM65554.1| hypothetical protein bthur0008_30230 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941011|gb|AEA16907.1| transcriptional repressor [Bacillus thuringiensis serovar chinensis CT-43] Length = 374 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIANKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ--------LNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + + + + + ++ I+ + Sbjct: 64 LISYTPQMEQEDIKNLYHRLAEAFSEEPFDEVMMECRGIIKKYYSCFPLLIQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDTDRGIEILEEAM 141 >gi|227533389|ref|ZP_03963438.1| DNA-binding protein; transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188955|gb|EEI69022.1| DNA-binding protein; transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 373 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 42/115 (36%), Gaps = 11/115 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++INVG I R G++Q+ L + +G++ V K+E G + + L ++ + I Sbjct: 1 MEINVGAVISANRKQKGITQQALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + S + + F V + I L+R Sbjct: 61 DKLMAYDAQLSSTEI-----------RRIYTSMKQAFETQPGDAVLKSIRNLIRR 104 >gi|167554296|ref|ZP_02348037.1| HTH-type transcriptional regulator DicA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321471|gb|EDZ09310.1| HTH-type transcriptional regulator DicA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 133 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 8/127 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ RR L +SQ LG+ + + + ++E+ + RL +S+ L+ ++ Sbjct: 7 GARLLARRKKLKLSQAALGKLVKVAHVTISQWERDETQPAGKRLFSLSQALQCSPTWLLF 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 D +L + + + + + + ++ + + + + Sbjct: 67 GDEDKQPAEPIAPP----PDLRDDQKELLKLYEALPESEQKAQL----EGMRARVENFNK 118 Query: 136 IEEECMV 142 + +E + Sbjct: 119 LFDELLK 125 >gi|157737361|ref|YP_001490044.1| hypothetical protein Abu_1115 [Arcobacter butzleri RM4018] gi|157699215|gb|ABV67375.1| hypothetical protein Abu_1115 [Arcobacter butzleri RM4018] Length = 104 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 3/103 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G++ E+L + + I+ + +Q YE N S + I++ + + Sbjct: 5 RLKEAREKAGLTLEELSKRVNISKRTLQNYESNKNEPTVSIVSKIAKYCFVDEIYLLTGN 64 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + E ++ + + I +R KI Sbjct: 65 DDIEINYEKEILK---ILNNATKEEKAYIYYLIKIEHIRNKIF 104 >gi|30261830|ref|NP_844207.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47527071|ref|YP_018420.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184664|ref|YP_027916.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|165869280|ref|ZP_02213939.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167633298|ref|ZP_02391623.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167638844|ref|ZP_02397119.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170686265|ref|ZP_02877487.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707323|ref|ZP_02897778.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650592|ref|ZP_02933559.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190566460|ref|ZP_03019378.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227815396|ref|YP_002815405.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229604640|ref|YP_002866215.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254683329|ref|ZP_05147190.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254723912|ref|ZP_05185698.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254734684|ref|ZP_05192396.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254741092|ref|ZP_05198780.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755336|ref|ZP_05207370.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254759873|ref|ZP_05211897.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30256058|gb|AAP25693.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47502219|gb|AAT30895.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178591|gb|AAT53967.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164714720|gb|EDR20238.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167513308|gb|EDR88679.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167531336|gb|EDR94014.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170127822|gb|EDS96694.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170669962|gb|EDT20703.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172083736|gb|EDT68796.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190562595|gb|EDV16562.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227006572|gb|ACP16315.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229269048|gb|ACQ50685.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 181 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEQQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|81427850|ref|YP_394849.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609491|emb|CAI54537.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 251 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 45/125 (36%), Gaps = 11/125 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R+ +Q L + L ++ V +E G N + IS++ + Sbjct: 1 MNIGHQIKQNRLKREWTQGYLAQLLNVSRSTVSSWEVGRNYPDLETIVAISDLFAISLDK 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + ++S + + + + + I + R + E++ Sbjct: 61 LLREDSVMTKEVSKRMHMNKYYKIVLTMIAVILLGLVISN-----------RRLNQLEQR 109 Query: 133 YRTIE 137 YR Sbjct: 110 YRENL 114 >gi|323525513|ref|YP_004227666.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323382515|gb|ADX54606.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 84 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 25/70 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ +R R G+SQE L + V E G + + I L+ S F Sbjct: 6 AVGEVLRALRRRKGLSQEALAHAAQMERNYVSLIELGRHSPSVRVIWKICAALDVTPSAF 65 Query: 74 FDVSPTVCSD 83 + + Sbjct: 66 LAAAEARLGE 75 >gi|312960117|ref|ZP_07774629.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens WH6] gi|311285611|gb|EFQ64180.1| transcriptional regulator, Cro/CI family [Pseudomonas fluorescens WH6] Length = 130 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 12/114 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R LG+SQ+ GE G+ KYE G A L ++E + + Sbjct: 13 IGSRLRQERERLGLSQKVFGEIGGVEANAQGKYESGGRTPKADYLSRVAEK-GVDVLYVL 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + T + + + ++ + + I L ++ Sbjct: 72 TGTATPIQLETLSQIE-----------EEVLGDYRVMIKEDQDAIRRLASTLAK 114 >gi|291548990|emb|CBL25252.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 112 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V ++G+ ++ R M+QE + E +G++ Q V K+E G + S L ++++ + Sbjct: 45 VRKSLGEALKAHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNLFALAKLYGVSV 104 Query: 71 SFFF 74 Sbjct: 105 EELL 108 >gi|261256870|ref|ZP_05949403.1| putative repressor protein of prophage [Escherichia coli O157:H7 str. FRIK966] Length = 217 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR RR L ++Q+ L + G+ V +EK + + LQ ++ L+ + Sbjct: 7 RIRQRRKELNLTQQALADLTGVNRVTVTGWEKDDYQPNGANLQALANALKCDPLWLVSGK 66 Query: 78 PTVCSDI 84 + I Sbjct: 67 GSPEPKI 73 >gi|320008070|gb|ADW02920.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 241 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 26/79 (32%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ +G R+R R G + + GI + + E G + + ++E Sbjct: 6 PDGTTAAMGPRLRAARERHGSTLAGVSCATGIAPSTLSRIETGRRKPTLEVVLRLAEEYG 65 Query: 68 SPISFFFDVSPTVCSDISS 86 + + P + Sbjct: 66 VSLDYLAGTVPAPERPAPA 84 >gi|256842347|ref|ZP_05547850.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262384742|ref|ZP_06077875.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|301312235|ref|ZP_07218152.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 20_3] gi|256735954|gb|EEU49285.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262293723|gb|EEY81658.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|300829657|gb|EFK60310.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 20_3] Length = 154 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 58/147 (39%), Gaps = 6/147 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +G + ++ G I R + G+ Q+ L + LG++ Q++ + E V LQ Sbjct: 1 MGTENTGTSQRVHHGHNIASARRMKGLVQKTLADLLGMSQQRLSQIESTKI-VSDEILQK 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFIS-----TPDGLQLNRYFIQIDDVKVR 116 ++E+ + + + I + N ++ + + + F V Sbjct: 60 VAEITGVSLEDLKTMEEPMSIYIENNSTNTIEKGANVGSVNSSYDENDNDFETTYHVNPI 119 Query: 117 QKIIELVRSIVSSEKKYRTIEEECMVE 143 KI EL ++ ++++ E+ + E Sbjct: 120 DKITELYERLLKADQEKIKELEQRIAE 146 >gi|251782740|ref|YP_002997043.1| putative transcriptional regulator PlcR [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391370|dbj|BAH81829.1| putative transcriptional regulator PlcR [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 290 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ +L+R LG+SQ+ L + + Q+ K E+G A L +S+ LE + +FF+ Sbjct: 7 EKFKLKRKELGISQQSLADGI-CEQSQISKIERGNFIPSADLLYKLSQRLEVTLDYFFND 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 V S +S+ +N + + + L + Sbjct: 66 EIEVKSSLSNFKNLSIHLLDDRNYDDLEYIYK 97 >gi|225574085|ref|ZP_03782696.1| hypothetical protein RUMHYD_02147 [Blautia hydrogenotrophica DSM 10507] gi|225038685|gb|EEG48931.1| hypothetical protein RUMHYD_02147 [Blautia hydrogenotrophica DSM 10507] Length = 153 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 8/127 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G + R G+SQE + E LG++ Q + K+E + + ++ + + Sbjct: 1 MNLGNSLFHARKKRGLSQEDVAEKLGVSRQTISKWETNETVPDIYQSKRMAMLYNMSLDE 60 Query: 73 FFDVSPT--------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 D ++ +EE L +Y +D KI ++ Sbjct: 61 LIDFDIDIREIQEVIDKTNEKTEEKINWTNAWGKKYPILLKYQADVDVPSYAYKISAMLD 120 Query: 125 SIVSSEK 131 + + Sbjct: 121 ELKLEHQ 127 >gi|254392695|ref|ZP_05007869.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|197706356|gb|EDY52168.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 446 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 44/119 (36%), Gaps = 3/119 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ R G++Q +L E T + E G R + L+ ++ L + Sbjct: 5 VEIGRRVQRLRTERGLTQRQLAE-PSYTPAYISTLESGKVRPSETALRFLAGRLGTSYEE 63 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQ-IDDVKVRQKIIELVRSIVSS 129 P + ++T + ++ + + D + + E +++ Sbjct: 64 LTTGRPARLGTELRLGLTDAQRELATGAADEAAVHYRRLLTDAEHLDLVPEQAEALLGL 122 >gi|163745179|ref|ZP_02152539.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161381997|gb|EDQ06406.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 183 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG ++R R G+SQ +L G+T + EK + L+ + + + ++ Sbjct: 1 MNVGDKLRAIRKKHGLSQRELAAKAGLTNGTISLIEKNRTSPSVASLKSLLDAIPISMAE 60 Query: 73 FFDVSPTVCSD 83 FF + S Sbjct: 61 FFSILEEDDSA 71 >gi|163745989|ref|ZP_02153348.1| helix-turn-helix domain protein, putative [Oceanibulbus indolifex HEL-45] gi|161380734|gb|EDQ05144.1| helix-turn-helix domain protein, putative [Oceanibulbus indolifex HEL-45] Length = 133 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 51/124 (41%), Gaps = 10/124 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R GM+Q L + LG+ ++ +E+ ++ A+RL ++ +L + + + Sbjct: 16 GDRVAAAREQTGMTQAMLAKRLGVRLATLRGWEEDLSEPRANRLSMLAGLLNVSMMWLIN 75 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + E + L+ ++ +R +++ ++ EK+ R Sbjct: 76 GEGEGVDAPDAGET------ARRVDLEEVLADMR----ALRTDLLKKAETVGKLEKRIRR 125 Query: 136 IEEE 139 + E Sbjct: 126 LMTE 129 >gi|39996520|ref|NP_952471.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39983401|gb|AAR34794.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|307634843|gb|ADI84259.2| helix-turn-helix DNA-binding protein, putative [Geobacter sulfurreducens KN400] Length = 142 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 15/133 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLES 68 ++ N+G ++ R G++Q+ L + + + + K E+G L ISE L Sbjct: 1 MNCNIGHALKRLRSERGLTQKDLAALVSGGLDYTYIGKIERGEQLPSLKILIGISEALGV 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI-- 126 P+ FF + + +++ ++E+VR + Sbjct: 61 PVGIFFGGESAAEAARLRVVQAGKAGELEKE--------LRVLHPDDLPLVVEIVRLLNR 112 Query: 127 ---VSSEKKYRTI 136 +K Y+T Sbjct: 113 HRRAERKKAYQTP 125 >gi|21233393|ref|NP_639310.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770358|ref|YP_245120.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|188993556|ref|YP_001905566.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. B100] gi|325920249|ref|ZP_08182199.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325923520|ref|ZP_08185169.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325923552|ref|ZP_08185196.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|21115231|gb|AAM43192.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575690|gb|AAY51100.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|167735316|emb|CAP53530.1| transcriptional regulator [Xanthomonas campestris pv. campestris] gi|325545969|gb|EGD17179.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325545992|gb|EGD17197.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325549272|gb|EGD20176.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 66 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 R+R R G SQ +LGE LG++ Q + E G I+ + I F F Sbjct: 3 SRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVFLF 62 Query: 75 DV 76 + Sbjct: 63 ED 64 >gi|325685380|gb|EGD27486.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 122 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 35/85 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK +R R GMSQ++L LG++ Q + +E G ++ I+ + + Sbjct: 5 MIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVEKIANIFGVSRNSI 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTP 98 P +E+ + ++ Sbjct: 65 LAGLPVEMLVQEGQEDRGVVDLTDR 89 >gi|302334320|gb|ADL24513.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus JKD6159] Length = 189 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + DI ++ + + Sbjct: 61 LVKGTIPFVPDIKAQRSLNLW 81 >gi|293568750|ref|ZP_06680064.1| transcriptional regulator, putative [Enterococcus faecium E1071] gi|291588467|gb|EFF20301.1| transcriptional regulator, putative [Enterococcus faecium E1071] Length = 270 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 11 VDI-NVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D VG RIR R L +S EK G+ + + V +E+G+N L I+EV Sbjct: 3 IDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEVGHV 62 Query: 69 PISFFFDVSPT 79 + Sbjct: 63 TNEYLLYGDQE 73 >gi|229197431|ref|ZP_04324158.1| hypothetical protein bcere0001_29760 [Bacillus cereus m1293] gi|228586055|gb|EEK44146.1| hypothetical protein bcere0001_29760 [Bacillus cereus m1293] Length = 374 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + ++ + + + ++ ++ + Sbjct: 64 LICYTPQMEQEDIKDLYHRLAEAFSEKPFDEVMMECREIIKKYYSCFPLLLQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K I EE M Sbjct: 124 HMLTEDTDKRIEILEEAM 141 >gi|260589352|ref|ZP_05855265.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|260540433|gb|EEX21002.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 203 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 3/98 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ N+K+ N +G RIR R G++Q +L LG + + +QKYE G V + L Sbjct: 1 MMSNEKLHNN---QIGLRIRTARKEKGINQTELANLLGKSLRTIQKYESGEIEVSIAMLN 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 I++VL+ ++ + + F Sbjct: 58 EIAKVLDCESTYLIGYDAERKPLENLSDIMNFLFQLDK 95 >gi|167720910|ref|ZP_02404146.1| DNA-binding protein [Burkholderia pseudomallei DM98] Length = 195 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 4/91 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DINQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVS 61 Query: 70 ISFFFDVS----PTVCSDISSEENNVMDFIS 96 ++ F+ ++E+ D S Sbjct: 62 LASLFEDDRAARAASPLSRATEQPVWKDPAS 92 >gi|67078395|ref|YP_246012.1| transcriptional regulator [Bacillus cereus E33L] gi|66970701|gb|AAY60673.1| conserved hypothetical protein [Bacillus cereus E33L] Length = 186 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R MSQE+L E + ++ Q + +E N L +S + + + Sbjct: 1 MNIGRQIQYFRKRDNMSQEELAEKIHVSRQSISNWENERNYPDIHNLLMMSILFNASLDD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + + + Sbjct: 61 LVKGDVKIMKEELQKSDFFKW 81 >gi|49082322|gb|AAT50561.1| PA4077 [synthetic construct] Length = 69 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 22/67 (32%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G SQ +L L ++ Q V E G ++ V I FD Sbjct: 3 NRVRELRAERGWSQAELAGKLEVSRQTVNAIETGRYDPSLPLAFKLARVFGLAIEAIFDD 62 Query: 77 SPTVCSD 83 Sbjct: 63 REGQLDG 69 >gi|42780924|ref|NP_978171.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206974833|ref|ZP_03235748.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217959313|ref|YP_002337861.1| DNA-binding protein [Bacillus cereus AH187] gi|222095451|ref|YP_002529511.1| DNA-binding protein [Bacillus cereus Q1] gi|229090798|ref|ZP_04222029.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|229138526|ref|ZP_04267113.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|42736845|gb|AAS40779.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|206746852|gb|EDZ58244.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217066610|gb|ACJ80860.1| DNA-binding protein [Bacillus cereus AH187] gi|221239509|gb|ACM12219.1| DNA-binding protein [Bacillus cereus Q1] gi|228644934|gb|EEL01179.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|228692549|gb|EEL46277.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|324325844|gb|ADY21104.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 181 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|15802455|ref|NP_288481.1| putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 EDL933] gi|12516142|gb|AAG57035.1|AE005422_10 putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 str. EDL933] Length = 196 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + +G R++ R G++Q +LG+ G+T + +EK +N G+ L Sbjct: 1 MMES----------LGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALS 50 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEEN 89 +++ L + S+ + + Sbjct: 51 KLAQALGTTESYLLYGVSSPELSFVQSTS 79 >gi|15832020|ref|NP_310793.1| repressor protein [Escherichia coli O157:H7 str. Sakai] gi|254793674|ref|YP_003078511.1| putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 str. TW14359] gi|13362234|dbj|BAB36189.1| putative repressor protein [Escherichia coli O157:H7 str. Sakai] gi|254593074|gb|ACT72435.1| putative repressor protein of prophage CP-933U [Escherichia coli O157:H7 str. TW14359] Length = 215 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + +G R++ R G++Q +LG+ G+T + +EK +N G+ L Sbjct: 1 MMES----------LGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALS 50 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEEN 89 +++ L + S+ + + Sbjct: 51 KLAQALGTTESYLLYGVSSPELSFVQSTS 79 >gi|325696215|gb|EGD38106.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK160] Length = 180 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 56/133 (42%), Gaps = 8/133 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G+SQ+ L + +G++++ +Q +E GVN++ + Q ++ + + Sbjct: 2 NRIKEIRQKEGLSQQALAKKIGVSYRTIQNWENGVNQIKPDKAQQLANFFRVGVGYLLGY 61 Query: 77 SPTVCSDISSEE-----NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI---VS 128 + ++ + D + + I + + ++++ + Sbjct: 62 NDEEKEKQITKAKKAIIKEIQDLSDYAKTNDIAKQIDSIFQNEGLGEFFYNLKNVFFQIE 121 Query: 129 SEKKYRTIEEECM 141 S+K+Y E+E + Sbjct: 122 SKKEYSDAEKEAL 134 >gi|307133110|ref|YP_003885126.1| putative transcriptional regulator [Dickeya dadantii 3937] gi|306530639|gb|ADN00570.1| Putative transcriptional regulator [Dickeya dadantii 3937] Length = 106 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 58/126 (46%), Gaps = 26/126 (20%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECL----GITFQQVQKYEKGVNRVGASRLQ 60 K PN D+ +R++ R+ G+SQ+KLG + ++ +YEKGV+ Q Sbjct: 2 KSRPNYHDVFC-QRLKQARLAKGLSQKKLGIAAGIDEFVASTRINRYEKGVHEASIDTAQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +++ L+ P++FF+ + +L F+++ + R +I+ Sbjct: 61 QLADALDVPLAFFYTADDELA--------------------ELMLAFLRL-SPEKRAEIL 99 Query: 121 ELVRSI 126 LV+++ Sbjct: 100 TLVKTV 105 >gi|260892586|ref|YP_003238683.1| helix-turn-helix domain protein [Ammonifex degensii KC4] gi|260864727|gb|ACX51833.1| helix-turn-helix domain protein [Ammonifex degensii KC4] Length = 349 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI+ R+ G+S L E +G++ Q + KYE+G++ G+ L ++E L + Sbjct: 9 RQIGLRIKEARLSRGLSLRALAEKVGVSAQAISKYERGLDIPGSGVLLRLAEALGVKWEY 68 Query: 73 F 73 F Sbjct: 69 F 69 >gi|260439179|ref|ZP_05792995.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|292808378|gb|EFF67583.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] Length = 140 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFF 74 G+RIR R G++Q +L + +G++ + V+ YE G + ++E + I++ Sbjct: 4 GERIRELRTQKGLTQPQLADSIGVSVRTVKSYELGTSLPKTRETYQKLAEFFDVNINYLL 63 Query: 75 DVSPTVCSDISS 86 D + Sbjct: 64 AKDEQFILDAGA 75 >gi|218134985|ref|ZP_03463789.1| hypothetical protein BACPEC_02890 [Bacteroides pectinophilus ATCC 43243] gi|217990370|gb|EEC56381.1| hypothetical protein BACPEC_02890 [Bacteroides pectinophilus ATCC 43243] Length = 368 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE+L E LG++ Q V KYE + ++ +SE+ + Sbjct: 1 MILADKIINLRKKNGWSQEELAERLGVSRQSVSKYEGAQSVPDLDKILKLSEIFGVTTDY 60 Query: 73 FFDVSPTVCS 82 Sbjct: 61 LIKDDIEEEQ 70 >gi|294783001|ref|ZP_06748325.1| transcriptional regulator, MerR family [Fusobacterium sp. 1_1_41FAA] gi|294479879|gb|EFG27656.1| transcriptional regulator, MerR family [Fusobacterium sp. 1_1_41FAA] Length = 184 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 38/85 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R GMS +L + ++ + + E+G L+ I+ L+ +++ Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVDLSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + +I + + +I + Sbjct: 61 LIEDEEDDIRNIEFVKAANVRYIES 85 >gi|259649410|dbj|BAI41572.1| hypothetical phage protein [Lactobacillus rhamnosus GG] Length = 111 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 40/113 (35%), Gaps = 11/113 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R M+Q +G+ + ++ V YEK ++ ++ F Sbjct: 4 GERLKELRNEKKMTQSDVGKIINVSKASVSLYEKNERTPDQDSIKKLASYFNVSTDFLLG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 V+ + +D + + + I +E+++ ++ Sbjct: 64 VTD------VRSKPEQIDISDSKNDTIMTFEGRPIPPED-----LEIIKRLLR 105 >gi|197105901|ref|YP_002131278.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479321|gb|ACG78849.1| transcriptional regulator, Cro/CI family [Phenylobacterium zucineum HLK1] Length = 206 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 45/97 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+G +R+RR LG++ ++L E G++ + + E+G L IS+ L ++ Sbjct: 22 INIGPAVRVRRKELGLTLKELAERSGLSVAFISQIERGKTAPSIISLLQISDALGVGVNH 81 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 F + + + +D S ++L+ F + Sbjct: 82 FVEATQEEKLIRRGRDPEFIDVDSPTTYIRLSNSFPE 118 >gi|218902948|ref|YP_002450782.1| DNA-binding protein [Bacillus cereus AH820] gi|228926864|ref|ZP_04089931.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121381|ref|ZP_04250611.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|218538383|gb|ACK90781.1| DNA-binding protein [Bacillus cereus AH820] gi|228662070|gb|EEL17680.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|228832805|gb|EEM78375.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 181 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|289165190|ref|YP_003455328.1| phage repressor [Legionella longbeachae NSW150] gi|288858363|emb|CBJ12231.1| phage repressor [Legionella longbeachae NSW150] Length = 223 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R+ G++ + L E Q + +E+G G ++ +++ L+ ++ Sbjct: 7 IGQRIKEERVARGLTLKTLEELTDDLKQTRISNWERGYRTPGPEEIKQLAQALDVSPAYL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 ++ N ++ ++ + + ++ + + Q++ Sbjct: 67 MCLTDEKQPKKKQGLNALIPLLNFQQACEAKLFIQRLKNNQNEQEV 112 >gi|257870000|ref|ZP_05649653.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257804164|gb|EEV32986.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 112 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 12/119 (10%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R+ ++Q+++ + +GIT YE G S LQ ++++ + S Sbjct: 6 IKKLRLEKKLTQQEVADKIGITRPAYTAYESGKREPDFSMLQVLADLFGVSTDYLLGRSD 65 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 E + + I + ++I+ + + E+K R E Sbjct: 66 KRHLYPKVESDLISSHIDESI------------SEEGIKEILTFIDFVKEREQKKRPSE 112 >gi|227534216|ref|ZP_03964265.1| xre family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188150|gb|EEI68217.1| xre family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 344 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 47/92 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR RR+ LG++QE+L + +G++ V K+EK V+ + L ++ +L + ++ Sbjct: 1 MHIDQVIRERRLALGLTQEELADKIGVSAPAVSKWEKRVSYPDITLLPALARILGTDVNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S T+ + S + + G Q Sbjct: 61 LLTFSVTMDPEESRHLYEKLMTTAKDAGWQAA 92 >gi|297204985|ref|ZP_06922381.1| helix-turn-helix domain protein [Lactobacillus jensenii JV-V16] gi|297149563|gb|EFH29860.1| helix-turn-helix domain protein [Lactobacillus jensenii JV-V16] Length = 136 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 33/70 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R +SQE++ L I+ Q + K+E G + +L +S++ + + Sbjct: 6 ERLKNLREANNLSQEEVASRLKISRQSISKWELGDSIPDIEKLTELSKIYGVSLDYLVGN 65 Query: 77 SPTVCSDISS 86 S + I+ Sbjct: 66 SKSESIKINE 75 >gi|268590938|ref|ZP_06125159.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291313738|gb|EFE54191.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 78 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ VG+ IR RR LG+S +L +G++ QQ+ +YE+G + L ++ L++ + Sbjct: 4 VNRIVGREIRKRRKHLGLSGIELANLVGVSQQQISRYERGECNINIENLHTLANALDTEM 63 Query: 71 SFFFDVS 77 FF Sbjct: 64 ICFFIDD 70 >gi|160933365|ref|ZP_02080753.1| hypothetical protein CLOLEP_02210 [Clostridium leptum DSM 753] gi|156867242|gb|EDO60614.1| hypothetical protein CLOLEP_02210 [Clostridium leptum DSM 753] Length = 194 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I+ R ++Q +L E L ++ + + K+E G S L+ ++ L+ I Sbjct: 7 GSTIKSLREKQRLTQSQLAEKLCVSDKTISKWETGRGFPDISLLKPLACALQVSIPELLS 66 Query: 76 VS 77 Sbjct: 67 GE 68 >gi|154503168|ref|ZP_02040228.1| hypothetical protein RUMGNA_00992 [Ruminococcus gnavus ATCC 29149] gi|153796162|gb|EDN78582.1| hypothetical protein RUMGNA_00992 [Ruminococcus gnavus ATCC 29149] Length = 154 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 36/77 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VGK+I+ R L +SQE+L + +T Q + +E G N + L +S++ + + Sbjct: 1 MDVGKQIKKFRQDLKLSQEELASKIFVTRQTISNWENGKNYPDVNSLVMLSQLFNTSLDI 60 Query: 73 FFDVSPTVCSDISSEEN 89 +++ Sbjct: 61 LVKGDVIEMEKQVEQDD 77 >gi|154503587|ref|ZP_02040647.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC 29149] gi|153795687|gb|EDN78107.1| hypothetical protein RUMGNA_01411 [Ruminococcus gnavus ATCC 29149] Length = 120 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R LG++Q +LGE +G++ Q + KYE G + L +S+ PI + Sbjct: 10 NRIAELRKKLGLTQTRLGEEIGVSQQTISKYENGDENIPGDMLLALSKFFRVPIDYILRK 69 Query: 77 SPTVCSDISSEENNVMDFIST 97 ++ +M+ Sbjct: 70 EEEQQQREQNDRKEIMELYRD 90 >gi|139438180|ref|ZP_01771733.1| Hypothetical protein COLAER_00721 [Collinsella aerofaciens ATCC 25986] gi|133776377|gb|EBA40197.1| Hypothetical protein COLAER_00721 [Collinsella aerofaciens ATCC 25986] Length = 137 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 6/132 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+ IR R + GM+Q +L E +G+T V+ YE G+ V L+ I+ L ++ Sbjct: 1 MSVGENIRRYRKLRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESIAAALGVSVNA 60 Query: 73 FFDVSPTVCSDISS-----EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS-I 126 D D+ S E++ + + GL LN + K+ R+ + Sbjct: 61 LKDYGVETAGDLMSLLVRLEDSFGIVPAADGSGLSLNPKAPHAPKAAMAIKLWAEKRAQL 120 Query: 127 VSSEKKYRTIEE 138 + E E+ Sbjct: 121 ENGEIDDSEYED 132 >gi|91790905|ref|YP_551856.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91700785|gb|ABE46958.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 78 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + VG +R R+ GMSQ GE G + + E+G + L+ I+ Sbjct: 1 MKKTLALRVGMTVRKLRVESGMSQVVFGERCGFYQTYLSRLERGQANPTLNALEVIAGAF 60 Query: 67 ESPISFFFD 75 I FF+ Sbjct: 61 NLSIFEFFE 69 >gi|299139477|ref|ZP_07032651.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] gi|298598405|gb|EFI54569.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] Length = 188 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 45/116 (38%), Gaps = 7/116 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V +R R + +SQ +L + + + K E G S L ++ L+ IS Sbjct: 73 LQVASAVRDLRHVRNLSQRQLAARMNVPRTYISKIENGKAMPTLSSLDRLARALQVDISA 132 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 +PT ++ ++ P ++ +Y ++ + + + VR I Sbjct: 133 LLRDAPTR------HQDETAVLMADPFLAEIAKYSAHLNSTQ-KSIFLNHVREIAQ 181 >gi|295102948|emb|CBL00492.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 112 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V ++G+ ++ R M+QE + E +G++ Q V K+E G + S L ++++ + Sbjct: 45 VRKSLGEALKAHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNLFALAKLYGVSV 104 Query: 71 SFFF 74 Sbjct: 105 EELL 108 >gi|257879453|ref|ZP_05659106.1| predicted protein [Enterococcus faecium 1,230,933] gi|257813681|gb|EEV42439.1| predicted protein [Enterococcus faecium 1,230,933] gi|295100939|emb|CBK98484.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 101 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKRI+ R G++QE+L E LG+ + + E G + + E+ + + F Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTLDYIFL 98 Query: 76 VSP 78 Sbjct: 99 GRE 101 >gi|262197484|ref|YP_003268693.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262080831|gb|ACY16800.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 131 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 49/133 (36%), Gaps = 2/133 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G+ +R R G++QE+ E +G++ + + E+G + QHI+ L Sbjct: 1 MNHELAATMGREMRRARTAQGLTQERAAEAIGVSVEFYARVERGKSHPSVETFQHIASTL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 E + P L+ ++ R+ + +++ Sbjct: 61 EVSADVLLGLDGER--GALPAAALWQRGEDDPPHLRRIMARVEALPDSTRRLVEMVLKEC 118 Query: 127 VSSEKKYRTIEEE 139 E++ ++ Sbjct: 119 ERIERQRDAAPDD 131 >gi|256852139|ref|ZP_05557526.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii 27-2-CHN] gi|260661292|ref|ZP_05862205.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|282932144|ref|ZP_06337598.1| transcriptional regulator [Lactobacillus jensenii 208-1] gi|297204982|ref|ZP_06922378.1| XRE family transcriptional regulator [Lactobacillus jensenii JV-V16] gi|256615551|gb|EEU20741.1| helix-turn-helix domain-containing protein [Lactobacillus jensenii 27-2-CHN] gi|260547747|gb|EEX23724.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|281303737|gb|EFA95885.1| transcriptional regulator [Lactobacillus jensenii 208-1] gi|297149560|gb|EFH29857.1| XRE family transcriptional regulator [Lactobacillus jensenii JV-V16] Length = 138 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 38/79 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ GMSQE+L L ++ Q V K+E G + +L+ +S++ + I + Sbjct: 3 QINERLKEMRLNAGMSQEELASKLNVSRQSVSKWETGDSLPDILKLKQLSQLYDVSIDYI 62 Query: 74 FDVSPTVCSDISSEENNVM 92 + + E + Sbjct: 63 VGNKNFDKKEETQETSKQN 81 >gi|225863714|ref|YP_002749092.1| DNA-binding protein [Bacillus cereus 03BB102] gi|225789773|gb|ACO29990.1| DNA-binding protein [Bacillus cereus 03BB102] Length = 77 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 30/57 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +++G++++ R G SQE + + +G+T Q V K+E + L +SE+ Sbjct: 1 MSLGQQLKRLRESKGFSQEDVAKKIGVTRQAVYKWEHDKSCPDIDNLILLSEMYNVT 57 >gi|212710302|ref|ZP_03318430.1| hypothetical protein PROVALCAL_01361 [Providencia alcalifaciens DSM 30120] gi|212687109|gb|EEB46637.1| hypothetical protein PROVALCAL_01361 [Providencia alcalifaciens DSM 30120] Length = 185 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 38/89 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N ++I +G+++RL R +S +L GI+ + K E G + L+ I+ L Sbjct: 1 MENKINIKIGQKVRLLRQARNLSLSELSHLSGISKAALSKLESGDSNPRIDTLESIAAAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFI 95 P+S F + D++ Sbjct: 61 RFPLSDLFTRQNESYPYLVKSTPLEGDYL 89 >gi|170692962|ref|ZP_02884123.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] gi|170141960|gb|EDT10127.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] Length = 190 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 9/132 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG +IR R L + + GI+ + + E+G+ + L I+ L + + Sbjct: 12 LEVGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQY 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSSEK 131 F D S ++ F + F ++ +V +++ LV+ V ++ Sbjct: 72 FVDTPSEERSVSRGDQLKFFGFADS------ANLFARLTNVTGGRQLEAILVKMPVGQKR 125 Query: 132 KYRTIE--EECM 141 T EE M Sbjct: 126 SEVTTHAGEEFM 137 >gi|166030550|ref|ZP_02233379.1| hypothetical protein DORFOR_00211 [Dorea formicigenerans ATCC 27755] gi|166029712|gb|EDR48469.1| hypothetical protein DORFOR_00211 [Dorea formicigenerans ATCC 27755] Length = 114 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 29/61 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG I+++R+ G +QE++ + +G+ +YE +L +++ + + Sbjct: 27 MQVGLNIKIKRIGRGYTQEEIADAIGVARSTYTRYESDKRLPDIYKLCALADYFDVSLDD 86 Query: 73 F 73 Sbjct: 87 L 87 >gi|46019830|emb|CAE52354.1| putative transcriptional regulator [Streptococcus thermophilus] Length = 228 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 54/115 (46%), Gaps = 26/115 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+ + + LGI++Q +E+GV +++ + ++L+ P +F + Sbjct: 5 EKLKARRKELKLTQKNIADQLGISYQAYSAWERGVKEPSKEKVKRLEQILKVPRGYFTE- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 +++ R + + + K + +++E R +V EK Sbjct: 64 ------------------------IEIVRLYNTLSN-KGKNQVVEYARDLVQKEK 93 >gi|18313906|ref|NP_560573.1| helix-turn-helix protein [Pyrobaculum aerophilum str. IM2] gi|18161474|gb|AAL64755.1| helix-turn-helix protein [Pyrobaculum aerophilum str. IM2] Length = 516 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 23/63 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RI R G+S L + G++ + E+G S L +I+ L Sbjct: 5 VGSRIAELREKRGLSLTALAKLSGVSKSTLWGIERGEVVPTVSTLWNIANALGVTFGELI 64 Query: 75 DVS 77 Sbjct: 65 TYD 67 >gi|95931374|ref|ZP_01314085.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] gi|95132559|gb|EAT14247.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] Length = 150 Score = 48.7 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R LGM+Q K E G++ + + +EKG A +L + + I + Sbjct: 16 MIGERLRNERKRLGMTQPKFAEAAGVSKRTLIDWEKGETFPTAMQLSALFN-VGVDIQYV 74 Query: 74 FDVSPTVCSD 83 + Sbjct: 75 VAGLRESQNQ 84 >gi|323352770|ref|ZP_08087740.1| transcriptional repressor [Streptococcus sanguinis VMC66] gi|322121806|gb|EFX93552.1| transcriptional repressor [Streptococcus sanguinis VMC66] Length = 225 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 33/59 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVD 63 >gi|282916348|ref|ZP_06324110.1| DNA-binding protein [Staphylococcus aureus subsp. aureus D139] gi|282319788|gb|EFB50136.1| DNA-binding protein [Staphylococcus aureus subsp. aureus D139] Length = 179 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF S EE + D Sbjct: 61 FFKDSENEKVLYKKEEQVIYD 81 >gi|212640211|ref|YP_002316731.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212561691|gb|ACJ34746.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 121 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 43/112 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR+ R MSQ++L + + +QKYE G + + L+ P S Sbjct: 4 IGENIRMHREQRNMSQQELAMKVRVGVATIQKYESGEQVPDTPTILKLCTALDVPASELL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + S E + +L + + ++++++ + Sbjct: 64 ERADVSNSSSLDPEIEYLIKEIGIKRAKLILRKAKEFSEEDFLRVMQMLYEL 115 >gi|149201921|ref|ZP_01878895.1| possible transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] gi|149144969|gb|EDM32998.1| possible transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] Length = 129 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 3 GNKKIPNP--VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + ++ N D G+R+R R G+ Q++L E G+ + +EKG + L+ Sbjct: 9 DDTEMSNDETTDNLFGRRLRAARTERGLEQQQLAEKAGLPPSSISHFEKGARKPSFDNLR 68 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++++ L+ + T+ S++ + T + FI++ + Sbjct: 69 NLAKSLDVTTDYLLGRVDTMDRVESAQRLHRHLGNLTESEVNTVEGFIKMLKDGKLE 125 >gi|15674195|ref|NP_268370.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|12725279|gb|AAK06311.1|AE006450_4 transcription regulator [Lactococcus lactis subsp. lactis Il1403] Length = 102 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R RM ++Q L LGI V YEK L + + + + Sbjct: 7 GDKLRALRMEKKLTQNDLAARLGIVGASVSSYEKNKQYPSVEVLIQLCQTFDVSADYLLG 66 Query: 76 VSPTVCSDISSEENNVMDFIST 97 +S + S+ + + Sbjct: 67 LSDDKNFNTSTLTEEQLQIVLR 88 >gi|332361797|gb|EGJ39601.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 225 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 15/111 (13%), Positives = 49/111 (44%), Gaps = 9/111 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRVELNLTQSSIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + ++ P ++++ ++ + + + + + + Sbjct: 65 ---------TSTLYTYPLLTAPHKKEVDQLASRLLERQRKVSSLTAYKVLS 106 >gi|319937786|ref|ZP_08012189.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319807221|gb|EFW03835.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 124 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 1/96 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++ R I GMSQE+L + +T Q V K+E + +L +SE+ E + Sbjct: 5 KQLIHLRNIRGMSQEELAALMDVTRQSVSKWETNQTYPDSEKLIRLSEIFEVSTDYLLKG 64 Query: 77 SPTVCSDISSEENNVMDFIST-PDGLQLNRYFIQID 111 + T +D + + D L + +I Sbjct: 65 TETEITDGQYNSQAGVQMSAEVNDILDHVYHMSRIK 100 >gi|302523093|ref|ZP_07275435.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302431988|gb|EFL03804.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 191 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R G++ L G++ V + E+G + L +++ L P+ FF Sbjct: 12 LGRRLSALRARAGLTISALAAAAGVSQGLVSQIERGAGNPSYTTLIKLADALRVPVGAFF 71 Query: 75 DVSPTVCSDIS 85 D S + Sbjct: 72 DGSEDAWEPAA 82 >gi|318057227|ref|ZP_07975950.1| hypothetical protein SSA3_04771 [Streptomyces sp. SA3_actG] gi|318075235|ref|ZP_07982567.1| hypothetical protein SSA3_00560 [Streptomyces sp. SA3_actF] Length = 210 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R G++ L G++ V + E+G + L +++ L P+ FF Sbjct: 31 LGRRLSALRARAGLTISALAAAAGVSQGLVSQIERGAGNPSYTTLIKLADALRVPVGAFF 90 Query: 75 DVSPTVCSDIS 85 D S + Sbjct: 91 DGSEDAWEPAA 101 >gi|293571244|ref|ZP_06682278.1| transcriptional regulator, xre family [Enterococcus faecium E980] gi|291608651|gb|EFF37939.1| transcriptional regulator, xre family [Enterococcus faecium E980] Length = 221 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 >gi|291561272|emb|CBL40071.1| Helix-turn-helix [butyrate-producing bacterium SS3/4] Length = 117 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 29/83 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI + G++ + L GI+ K++KG A + +++ + F + Sbjct: 5 ERILELQKQSGLTVKALEAATGISNGSFSKWKKGTYAPSAEAVLRLAKYFHVSTDYLFCL 64 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 S + + + Sbjct: 65 SDSPYPKVEISLTEKEKILIDAY 87 >gi|283471920|emb|CAQ51131.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ST398] Length = 189 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + DI ++ + + Sbjct: 61 LVKGTIPFVPDIKAQRSLNLW 81 >gi|311743857|ref|ZP_07717663.1| HTH_3 family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311312987|gb|EFQ82898.1| HTH_3 family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 80 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +RI + R G+S+ L + +G+ +Q + E+G I+ E P+ F Sbjct: 8 VHQRIAMLRAERGISRRDLADGVGVHYQTIGYLERGEFSPSLHLALSIAAFFEVPVEVVF 67 Query: 75 DVSP 78 + P Sbjct: 68 SLEP 71 >gi|229589684|ref|YP_002871803.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|229361550|emb|CAY48426.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] Length = 121 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 35/99 (35%), Gaps = 2/99 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R LG+SQ+ GE G+ KYE G A L ++ + + Sbjct: 4 IGSRLRQERERLGLSQKVFGEIGGVEANAQGKYESGGRAPKADYLSRVAAK-GVDVLYVL 62 Query: 75 DVSPTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + T + SE + + ++ Sbjct: 63 TGTATPIQLENLSEIEEKVLGNYRAMFKEDQAAIRRLTS 101 >gi|213968238|ref|ZP_03396382.1| phage repressor [Pseudomonas syringae pv. tomato T1] gi|301381283|ref|ZP_07229701.1| putative phage repressor [Pseudomonas syringae pv. tomato Max13] gi|302062899|ref|ZP_07254440.1| putative phage repressor [Pseudomonas syringae pv. tomato K40] gi|213926876|gb|EEB60427.1| phage repressor [Pseudomonas syringae pv. tomato T1] Length = 228 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ IR R G+SQ+ L G Q + YEKG + ++ IS+ L Sbjct: 4 LGQHIRKLRKEKGLSQQALAHACGWESQSRIGNYEKGTRQPSLQDIRKISDTLGVSFVDL 63 Query: 74 FDVSPTVCSDI 84 + + Sbjct: 64 VAFTDDNAQPL 74 >gi|210621162|ref|ZP_03292504.1| hypothetical protein CLOHIR_00447 [Clostridium hiranonis DSM 13275] gi|210154899|gb|EEA85905.1| hypothetical protein CLOHIR_00447 [Clostridium hiranonis DSM 13275] Length = 199 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 36/78 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R ++QE+L E L ++ + K+E G S L+ ISEV + I Sbjct: 5 EKLQYFRKKSNLTQEELAEKLFVSRTAISKWESGRGMPSISSLKAISEVFDVSIDELLSS 64 Query: 77 SPTVCSDISSEENNVMDF 94 + + ++ N+ F Sbjct: 65 EEIIEAAEKEKKENMKSF 82 >gi|170754766|ref|YP_001780468.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119978|gb|ACA43814.1| HTH domain protein [Clostridium botulinum B1 str. Okra] Length = 381 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 13/139 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I +R G++QE+L +G++ V K+E G++ L ++ + Sbjct: 6 IGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLSYPDILLLPELATYFNISVDELL 65 Query: 75 DVSPTVCSD--------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL---V 123 SP + + +S E +L + + + II+L Sbjct: 66 GYSPQLTKEDIGKIYSKLSHEFAVKPFDEVMEQCNKLIKKYYSCFPFLL--SIIQLLLNY 123 Query: 124 RSIVSSEKKYRTIEEECMV 142 +++ ++ + I ++C++ Sbjct: 124 SNLIKNDAIKKEIFQQCIL 142 >gi|168212390|ref|ZP_02638015.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|170716178|gb|EDT28360.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] Length = 180 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R ++Q+ L E GI+ + E ++ ++ L+ + Sbjct: 1 MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALATSLKLDLKS 60 Query: 73 FFDV 76 FFD Sbjct: 61 FFDD 64 >gi|117617483|ref|YP_854772.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117558890|gb|ABK35838.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 180 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 42/92 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R++ R +SQ +L + G+T + + EK + L+ + E + ++ Sbjct: 1 MDIGHRLKAVRTKAALSQRELAKRSGVTNGFISQIEKNQVSPSVASLRKVLEGIPMSLAT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + S++ ++ D + P +L Sbjct: 61 FFTDETEMDSEVIFRAADMPDLGTHPISYRLV 92 >gi|147668752|ref|YP_001213570.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|147668945|ref|YP_001213763.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432070|ref|YP_003461943.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|146269700|gb|ABQ16692.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|146269893|gb|ABQ16885.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|288945790|gb|ADC73487.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 71 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ G+RIR+ R +SQE+L G+ + E+G ++ I++ LE PI Sbjct: 6 IEQRFGERIRVLRKKAEISQEELAFRAGVHRTYLGGIERGERNPSLKNIEAIAKALEVPI 65 Query: 71 SFFF 74 S F Sbjct: 66 SDLF 69 >gi|330961956|gb|EGH62216.1| DNA-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 180 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 1/96 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DV 76 R+++ R LGM+ E L E GIT + K E+G+N + ++ + F + Sbjct: 4 RLKILRKRLGMTLEVLAEKTGITKSYLSKVERGLNTPSIAAALKLAAAFNVSVEELFTEG 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +P+ S N S + ++ D Sbjct: 64 TPSQASYSLVRSNQRQSLSSDSHKAEYAVLAHRVAD 99 >gi|329735768|gb|EGG72049.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU028] Length = 189 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NV +I+ R G SQE L E + ++ Q + +E + L + ++ + + Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHNLLIMFQLFKVSLDE 60 Query: 73 FFDVS 77 + Sbjct: 61 LVEDD 65 >gi|323439707|gb|EGA97425.1| putative transcriptional regulator [Staphylococcus aureus O11] gi|323443280|gb|EGB00897.1| putative transcriptional regulator [Staphylococcus aureus O46] Length = 189 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + DI ++ + + Sbjct: 61 LVKGTIPFVPDIKAQRSLNLW 81 >gi|313889436|ref|ZP_07823084.1| peptidase S24-like protein [Streptococcus pseudoporcinus SPIN 20026] gi|313122268|gb|EFR45359.1| peptidase S24-like protein [Streptococcus pseudoporcinus SPIN 20026] Length = 230 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 46/115 (40%), Gaps = 3/115 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R MSQE+LG +G+ + +E+G N L + ++ + +F + Sbjct: 4 GEQLKAIRQKEKMSQEELGHQIGVNKMTISNWEQGKNSPNQKHLAKLVDIFQVSEDYF-N 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI--IELVRSIVS 128 + + + + + L + I ++K+ + S+ + Sbjct: 63 LYHAILVPYKQLNTHNQKKVVSFSQKLLAKETKVIAIPTSKKKLYPYRVYESLSA 117 >gi|323528510|ref|YP_004230662.1| Cupin 2 barrel domain-containing protein [Burkholderia sp. CCGE1001] gi|323385512|gb|ADX57602.1| Cupin 2 conserved barrel domain protein [Burkholderia sp. CCGE1001] Length = 190 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 9/132 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG +IR R L + + GI+ + + E+G+ + L I+ L + + Sbjct: 12 LEVGSKIRALRQRLKRTLDDTATAAGISKPFLSQVERGLASPSITSLAGIAHALGVTVQY 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F D S ++ F + F ++ +V +++ ++ + +K+ Sbjct: 72 FVDTPSEERSVSRGDQLKFFGFADS------ANLFARLTNVTGGRQLEAILVKMPPGQKR 125 Query: 133 YR---TIEEECM 141 EE + Sbjct: 126 SEVTTHAGEEFL 137 >gi|240949581|ref|ZP_04753918.1| hypothetical protein AM305_11555 [Actinobacillus minor NM305] gi|240295989|gb|EER46659.1| hypothetical protein AM305_11555 [Actinobacillus minor NM305] Length = 356 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 39/72 (54%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++L R G+S LG +GI+ ++KYE VN +S L +S+VL PI FF Sbjct: 1 MIGNRLKLARNAAGLSMAALGNAVGISANMIKKYEHNVNMPTSSILLKLSQVLHIPIEFF 60 Query: 74 FDVSPTVCSDIS 85 F +P I Sbjct: 61 FRTTPPSLGAIE 72 >gi|254519819|ref|ZP_05131875.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] gi|226913568|gb|EEH98769.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] Length = 179 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 38/90 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R+ ++QE+L ++ + + E + + L I E+L + ++ Sbjct: 1 MEIGEKIRRLRIEKQLTQEELANRCELSKGFISQVENDLTSPSIATLIDILEILGTNLTE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 FF + + E+ + L Sbjct: 61 FFSEASEEKVTYTYEDMFETENEDLKYKLM 90 >gi|71903992|ref|YP_280795.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|94990913|ref|YP_599013.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|71803087|gb|AAX72440.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS6180] gi|94544421|gb|ABF34469.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10270] Length = 128 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 30/73 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G++Q++L + + + Q + +EKG ++ ++ V + Sbjct: 20 EKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKGSRNPKHKSIEKLANVFNVSTDYLLGN 79 Query: 77 SPTVCSDISSEEN 89 + + E Sbjct: 80 TDLKNPNDLDIEK 92 >gi|34497476|ref|NP_901691.1| transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|34103331|gb|AAQ59693.1| probable transcriptional regulator [Chromobacterium violaceum ATCC 12472] Length = 181 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R+R+ R G+SQ +L + G+T + E+ S L+ + E L ++ Sbjct: 1 MDVGARLRMVRTRFGLSQRELAKRAGVTNGTISLIEQNRVSPSVSSLKKVLEGLPITLAE 60 Query: 73 FFDVSPTVCSDISS-EENNVMDFISTPDGLQLNRYFIQIDDVK-VRQKII 120 FF + + + + + L L D+ +R++ + Sbjct: 61 FFTFDAEPAQPRVFYQADELPNLGNEDINLMLVGTAHDKRDIAILRERYL 110 >gi|83746365|ref|ZP_00943417.1| hypothetical protein RRSL_03958 [Ralstonia solanacearum UW551] gi|83726906|gb|EAP74032.1| hypothetical protein RRSL_03958 [Ralstonia solanacearum UW551] Length = 119 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+ +G+RI+ R SQE L + + E+G+ L ++ L Sbjct: 23 PAPILTALGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANLCYALN 82 Query: 68 SPISFFFDVSP 78 ++ F Sbjct: 83 VTLAELFGPLD 93 >gi|332522147|ref|ZP_08398399.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332313411|gb|EGJ26396.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 138 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 38/88 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ SQ+ L + L I+ Q + K+E G + L ++E+ + + Sbjct: 6 EQLKNYRLKKNYSQDALADRLFISRQAISKWENGDSTPDLENLVKLAEIFDVTLDQLVRG 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN 104 S + ++ D ++ +G + Sbjct: 66 KELASSHNNENDSEEDDNLNLLEGREYV 93 >gi|284043287|ref|YP_003393627.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947508|gb|ADB50252.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 88 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%) Query: 7 IPN--PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +P+ P +G+ +R RR LG++QE + G+ +++ + E G+ A L + Sbjct: 1 MPDATPFLRALGRALRERREELGLTQEAVSLRTGVPQRRIWELEAGIGNPTARTLLRLVS 60 Query: 65 VLESPISFFFDVSP 78 L+ P S F + Sbjct: 61 GLDMPCSELFTRAE 74 >gi|260844263|ref|YP_003222041.1| putative transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|257759410|dbj|BAI30907.1| predicted transcriptional regulator [Escherichia coli O103:H2 str. 12009] Length = 230 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 26/68 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R LG+++ L + + +E G V A ++ ++ L + + Sbjct: 163 IGARIKSARKKLGLTEADLARMIHTYSDPINDWECGTCEVPADQIVPLASALNCDLMWLL 222 Query: 75 DVSPTVCS 82 Sbjct: 223 TGKSEAKE 230 Score = 35.6 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R +R G++ +L L + + + ++E G S L ++ VL Sbjct: 86 NLRTQREACGLTTAELARLLDLDEEIIIQWESGEYEPTISMLTPLANVLGCDPLSLLSEK 145 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + + ++ I ++ R + + + + + I Sbjct: 146 NSESVIRVNAPEVHVENIGAR--IKSARKKLGLTEADLARMI 185 >gi|322420390|ref|YP_004199613.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320126777|gb|ADW14337.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 106 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 42/90 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R +SQEKL E +G+ +Q+ + E G + L+ I++ L+ I F Sbjct: 8 LGLRIREVRKARQLSQEKLAEKVGVDPKQISRIEGGKSAPSLDTLEAIAKHLQVEIKDLF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D V D ++ + + + +L Sbjct: 68 DFQHLVPEDKIEDQVLRLLGMMDEERKRLV 97 >gi|241889565|ref|ZP_04776863.1| Cro/CI family transcriptional regulator [Gemella haemolysans ATCC 10379] gi|241863187|gb|EER67571.1| Cro/CI family transcriptional regulator [Gemella haemolysans ATCC 10379] Length = 181 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 50/110 (45%), Gaps = 1/110 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R+ ++QE+LGE ++ + + E+ + +I +VL FF Sbjct: 4 IGERLKRLRIQKNLTQEELGERTDLSKGYISQVERDLASPSMETFFNILQVLGCAPKDFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 D + + + + T +G +L + ++ ++ I++L + Sbjct: 64 D-KESTSQKVYYSLEDQTSYEETDEGYKLTWLVPESNEKEMESLILKLDK 112 >gi|254460982|ref|ZP_05074398.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodobacterales bacterium HTCC2083] gi|206677571|gb|EDZ42058.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodobacteraceae bacterium HTCC2083] Length = 205 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 2/73 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N P+ +G IR R G++ L + L + + + E G R+ + LQ Sbjct: 1 MTKND--PSSTAKRLGAEIREVRKARGLTLNDLSDQLSCSTAYLSRIELGSARISGALLQ 58 Query: 61 HISEVLESPISFF 73 I + L +F Sbjct: 59 EIGKALHVDPEWF 71 >gi|20808446|ref|NP_623617.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi|20517063|gb|AAM25221.1| predicted Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] Length = 127 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 38/79 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V +G+R+ R G ++E+ LGI+ +Q+ +YEKG ++ L+ ++ + Sbjct: 1 MKEEVYREIGRRLWELRRQRGFTREQAARYLGISQKQLARYEKGREKISTDVLERLAGLY 60 Query: 67 ESPISFFFDVSPTVCSDIS 85 + D + + I+ Sbjct: 61 GCDYKYLLDDNESSSEQIA 79 >gi|73663694|ref|YP_302475.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496209|dbj|BAE19530.1| putative truncated transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 187 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 4/100 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + K I+ R+ LGM+QE L E L T + K+E + + L ++++ + Sbjct: 2 IQISKTIKKERLRLGMTQEALSEYLNTTKTTISKWESEILYPDITMLPKLAKLFNISVDD 61 Query: 73 FFDVS----PTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + S IS + +++ S + L R + Sbjct: 62 LLNYSIAMTDEEIKKISISLSKMVNHTSYSEYLFSVRDYY 101 >gi|53715744|ref|YP_101736.1| transcriptional regulator [Bacteroides fragilis YCH46] gi|60683678|ref|YP_213822.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|253566443|ref|ZP_04843896.1| transcriptional regulator [Bacteroides sp. 3_2_5] gi|255011438|ref|ZP_05283564.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12] gi|265767314|ref|ZP_06094980.1| transcriptional regulator [Bacteroides sp. 2_1_16] gi|313149255|ref|ZP_07811448.1| transcriptional regulator [Bacteroides fragilis 3_1_12] gi|52218609|dbj|BAD51202.1| transcriptional regulator [Bacteroides fragilis YCH46] gi|60495112|emb|CAH09931.1| putative transcriptional regulator [Bacteroides fragilis NCTC 9343] gi|251944615|gb|EES85090.1| transcriptional regulator [Bacteroides sp. 3_2_5] gi|263252619|gb|EEZ24131.1| transcriptional regulator [Bacteroides sp. 2_1_16] gi|301165190|emb|CBW24760.1| putative transcriptional regulator [Bacteroides fragilis 638R] gi|313138022|gb|EFR55382.1| transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 191 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 39/89 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R G+S E+L E G+ +Q+++ E ++ + L I+ VL + Sbjct: 5 KIVGEKIKSLRENKGISIEELAERSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRLGT 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 F D +S + + + + Sbjct: 65 FLDDQDETGPVVSRKMEATDTISFSNNAI 93 >gi|47565513|ref|ZP_00236554.1| transcriptional regulator, putative [Bacillus cereus G9241] gi|47557503|gb|EAL15830.1| transcriptional regulator, putative [Bacillus cereus G9241] Length = 181 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + T D+ + I ++ Sbjct: 63 SFL-LEDTNTDDLIVRPHKRKKMIIDNLSYEML 94 >gi|293553401|ref|ZP_06674032.1| transcriptional regulator, xre family [Enterococcus faecium E1039] gi|291602414|gb|EFF32635.1| transcriptional regulator, xre family [Enterococcus faecium E1039] Length = 221 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCNLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 >gi|225567835|ref|ZP_03776860.1| hypothetical protein CLOHYLEM_03908 [Clostridium hylemonae DSM 15053] gi|225163313|gb|EEG75932.1| hypothetical protein CLOHYLEM_03908 [Clostridium hylemonae DSM 15053] Length = 255 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+RIR R M+ E L + + + KYE G + L ++V P+ Sbjct: 29 KQVGERIRFYRKQEKMTLEMLAAKMNKSKATISKYENGTIVMDIGTLYDFADVFRIPVYC 88 Query: 73 FFDV 76 D Sbjct: 89 LIDD 92 >gi|182624896|ref|ZP_02952675.1| SOS-response transcriptional repressor [Clostridium perfringens D str. JGS1721] gi|177909902|gb|EDT72312.1| SOS-response transcriptional repressor [Clostridium perfringens D str. JGS1721] Length = 342 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 3/98 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R ++Q+ L + L ++ + YE G L +++ + I F Sbjct: 8 NNLKNYRKENKLTQDDLAKRLNVSRSAISYYENGTVEPSIYFLINLANEMNCSIDNLFGF 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + V ++ P +L + +IDD K Sbjct: 68 NRDVSIELPKNLTKED---LKPIEKELKKEDFEIDDPK 102 >gi|196044996|ref|ZP_03112229.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225863689|ref|YP_002749067.1| DNA-binding protein [Bacillus cereus 03BB102] gi|229184021|ref|ZP_04311235.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] gi|196023998|gb|EDX62672.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225789365|gb|ACO29582.1| DNA-binding protein [Bacillus cereus 03BB102] gi|228599460|gb|EEK57066.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] Length = 181 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|166032973|ref|ZP_02235802.1| hypothetical protein DORFOR_02694 [Dorea formicigenerans ATCC 27755] gi|166027330|gb|EDR46087.1| hypothetical protein DORFOR_02694 [Dorea formicigenerans ATCC 27755] Length = 190 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 25/66 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + I+ R +Q++L + L ++ Q V ++E G + ++ L + Sbjct: 41 MALNDNIKKIREEKKYTQQQLADKLYVSRQTVCRWENGSRCPDLITAKKLAMELGVTLDE 100 Query: 73 FFDVSP 78 Sbjct: 101 LISDED 106 >gi|160883666|ref|ZP_02064669.1| hypothetical protein BACOVA_01638 [Bacteroides ovatus ATCC 8483] gi|293373412|ref|ZP_06619767.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|299147543|ref|ZP_07040607.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] gi|156111079|gb|EDO12824.1| hypothetical protein BACOVA_01638 [Bacteroides ovatus ATCC 8483] gi|292631550|gb|EFF50173.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|298514330|gb|EFI38215.1| putative DNA-binding protein [Bacteroides sp. 3_1_23] Length = 157 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 50/139 (35%), Gaps = 11/139 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ G+ IR R+ M+QE L E + ++ V KYEK + + LQ + L P + Sbjct: 11 VHHGRNIRRTRIEKDMNQEGLSELVHLSQPAVSKYEK-MKVIDDEMLQRFARALNVPFDY 69 Query: 73 FFDVSPTVC----------SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + S + + + ++++ KI EL Sbjct: 70 LKTLEEDAQTVVFENNTVNNSEQSAGGANISMGIVKSDTEDSINDSRVNNFNPIDKITEL 129 Query: 123 VRSIVSSEKKYRTIEEECM 141 ++ + + E + Sbjct: 130 YERLLKEKDEKYAALERRL 148 >gi|160885068|ref|ZP_02066071.1| hypothetical protein BACOVA_03065 [Bacteroides ovatus ATCC 8483] gi|298483202|ref|ZP_07001382.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. D22] gi|156109418|gb|EDO11163.1| hypothetical protein BACOVA_03065 [Bacteroides ovatus ATCC 8483] gi|295084669|emb|CBK66192.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] gi|298270719|gb|EFI12300.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. D22] Length = 134 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 58/138 (42%), Gaps = 7/138 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K N + ++G++I R + GM+Q +LG+ LGIT Q V K E+ + RL Sbjct: 1 METEKYTNTI--HLGRKIERVRRLRGMTQAELGDLLGITKQAVSKIEQ-TEKFDDERLGE 57 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L + + + ++ S N+ F +++IE Sbjct: 58 IASALGVTVDGLKNFNEETILYNTNNFYENCGVKSAVSNTGNNQTFNSFP----VEQVIE 113 Query: 122 LVRSIVSSEKKYRTIEEE 139 + ++ +K+ ++ Sbjct: 114 IFEKLLDKQKEQFETLKK 131 >gi|222054124|ref|YP_002536486.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563413|gb|ACM19385.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 196 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 30/66 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R + ++L + G++ + + E + L I++ L+ I +FF Sbjct: 13 LGEKIRKLRQEQRHTLQELADVTGLSKPLLSQIENDQVTPPLATLLRIAKGLKVGIHYFF 72 Query: 75 DVSPTV 80 + Sbjct: 73 EEEGDR 78 >gi|73663000|ref|YP_301781.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495515|dbj|BAE18836.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 179 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MEIGKKIKNLRNIKKLTQEELAERTDLSKGYISQIESQYASPSMETFLNILEVLGTSPSD 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|314939175|ref|ZP_07846431.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314941485|ref|ZP_07848373.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314950591|ref|ZP_07853672.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314992445|ref|ZP_07857868.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314996689|ref|ZP_07861713.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313589173|gb|EFR68018.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313593020|gb|EFR71865.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313597216|gb|EFR76061.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313599702|gb|EFR78545.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313641522|gb|EFS06102.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 221 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 >gi|291530055|emb|CBK95640.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Eubacterium siraeum 70/3] Length = 115 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 44/109 (40%), Gaps = 11/109 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R+ G+SQEKL E G + + E+G ++ I+ + ++ F+ Sbjct: 14 GQRVRNYRIDKGLSQEKLAELSGCHPTYIGQVERGEKNATLESIEKIASAMNISLAQLFE 73 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +D + +L + + + + ++E+ + Sbjct: 74 KIGESSTDSYPMK-----------CYELVAAKSKSEQEHLYKMLVEMDK 111 >gi|260597676|ref|YP_003210247.1| DNA-binding transcriptional repressor PuuR [Cronobacter turicensis z3032] gi|260216853|emb|CBA30375.1| HTH-type transcriptional regulator puuR [Cronobacter turicensis z3032] Length = 185 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 1/90 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GKR+ R LG+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLAQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFA 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + ++ +++ S ++L Sbjct: 69 EPEKPDEPQVVINQDELIEIGSQGVSMKLI 98 >gi|255526730|ref|ZP_05393632.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296187021|ref|ZP_06855421.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255509565|gb|EET85903.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296048459|gb|EFG87893.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 235 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 7/123 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I +GKRIR R M+ ++L + + + V KYEKG + L ++++VL + Sbjct: 4 ISIEIGKRIRSFRKAKKMTIQELADQIYKSKATVSKYEKGEIVIDIVTLYNVAKVLRIHV 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 P + S+ + I D + + I ++ + +E Sbjct: 64 DQLLYCEPNGVEIQIEGKKPAFFQGSSQF-------YSYIYDGRANKLIRCVMDVLSKTE 116 Query: 131 KKY 133 + Sbjct: 117 ENR 119 >gi|237744347|ref|ZP_04574828.1| predicted protein [Fusobacterium sp. 7_1] gi|229431576|gb|EEO41788.1| predicted protein [Fusobacterium sp. 7_1] Length = 189 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I+ R ++Q+++ + LG++ +QKYE G ++ I E ++ Sbjct: 1 MKISEKIKELRKNNNLTQKEMAKKLGVSLSSLQKYEYGDFYPSIEVIRKIVEFFNITLND 60 Query: 73 FFDVSPTVCSD 83 F DVS + Sbjct: 61 FLDVSDISNEE 71 >gi|227498411|ref|ZP_03928557.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226903869|gb|EEH89787.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 123 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 34/105 (32%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G RI R GM Q +L + + + + E G ++ ++ + + Sbjct: 1 MNIGDRIAELREQAGMKQYELAQKANMNPAVLNRIETGKRPARDDEIKALAHIFHVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 S + + P+ + + V++ Sbjct: 61 LLGTSDSGYYTDPETARLAQELHDNPEYKAMFDATRGLSPEAVKE 105 >gi|171316971|ref|ZP_02906178.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171097895|gb|EDT42715.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 218 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 6/102 (5%) Query: 1 MVGNKKIPNP--VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M + + + ++ + +R+R R + G + + L G++ + E+ A Sbjct: 1 MQESPRSVDDTGINERIARRVRDLRTLRGYTLDALAARCGVSRSMISLIERASASPTAVV 60 Query: 59 LQHISEVLESPISFFF----DVSPTVCSDISSEENNVMDFIS 96 L ++ L ++ F D +P +++ D S Sbjct: 61 LDKLAAGLGVSLAGLFGGDRDDAPARPLVRRAQQAEWRDPGS 102 >gi|160895055|ref|ZP_02075829.1| hypothetical protein CLOL250_02605 [Clostridium sp. L2-50] gi|156863486|gb|EDO56917.1| hypothetical protein CLOL250_02605 [Clostridium sp. L2-50] Length = 209 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G RI+ RR+ L ++Q + E +G+T + +YE G + +SE L + + Sbjct: 10 IGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ + + QL + +D + ++ +++ Sbjct: 70 KGETDEYETDITDKRELQIRDAMGDILEQLPLALTKEEDAFSKDLLLLMLKQ 121 >gi|152983209|ref|YP_001352574.1| Cro/CI family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151283286|gb|ABR91696.1| transcriptional regulator, Cro/CI family [Janthinobacterium sp. Marseille] Length = 207 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 5/96 (5%) Query: 2 VGNKKI-----PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 + +KK + ++I +G RI R G +Q+KL G T + K E Sbjct: 1 MTSKKADKQDSASSIEIQLGGRISKLRTSRGFTQDKLALETGFTKGYLSKIENSKVIPPI 60 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVM 92 L I++VL++ +S + + Sbjct: 61 GTLVKIAQVLDTDLSALLEPETEEIDSPVCIVRSWQ 96 >gi|145595679|ref|YP_001159976.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145305016|gb|ABP55598.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 83 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V RI + R G+S+ +L + LG+ +Q + E+G R I+ E P+ F Sbjct: 5 VHNRIAVLRAERGISRRQLADALGVHYQTIGYLERGEFRPSLHLALRIAAYFEVPVEVVF 64 Query: 75 DVSP 78 + P Sbjct: 65 SIEP 68 >gi|326445242|ref|ZP_08219976.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 305 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 26/140 (18%), Positives = 58/140 (41%), Gaps = 4/140 (2%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PN +G R+ R G+S E+ GE G++ V +YE+G V +++ + V Sbjct: 16 PNARRRQLGYRLLELRNASGLSAEQAGEAAGVSKATVSRYERGKGNVRWNQVDQLCRVYG 75 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 ++ + ++E + + + L ++ + +R + +V ++ Sbjct: 76 LSDEDRAELVELAKNSKNTEGW-WVPYAGSLTKPMLLLLALENESPAIRHHSVGVVPGLL 134 Query: 128 SS---EKKYRTIEEECMVEQ 144 + + RT +EE E+ Sbjct: 135 QTLDYARAIRTADEEMSAEE 154 >gi|291542133|emb|CBL15243.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 108 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 9/112 (8%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ MSQ +L E L + + KYEKG+ + L++++E+ + + Sbjct: 6 RLKELRVDNDMSQTELAEKLNLKASAISKYEKGITQPSIDTLKNLAEIFSVTVDYLI--- 62 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 +S +N + TP+ L +F Q+ + I E ++++ + Sbjct: 63 -----GMSDIKNPYSNSQITPNEADLIEHFRQLTYENKIR-IDERIKTMADA 108 >gi|283785296|ref|YP_003365161.1| DNA-binding protein [Citrobacter rodentium ICC168] gi|282948750|emb|CBG88345.1| putative DNA-binding protein [Citrobacter rodentium ICC168] Length = 191 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 37/94 (39%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ +G RIR+ R G S +L E G++ + K E+G + A+ L +S Sbjct: 6 DSINQRIGVRIRIERESRGWSLTELAEKAGVSRAMIHKIERGESSPTATLLGRLSGAFGI 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 +S + + + + L+ Sbjct: 66 SMSTLIARAEMPEGKLLRAADQPVWRDPQSHYLR 99 >gi|253576542|ref|ZP_04853871.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844179|gb|EES72198.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 72 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KRIR R+ ++Q++L E L I+ +YE G V +S L ++ I + Sbjct: 3 KRIRDLRVDRDLTQQQLAEHLNISQATYSRYENGNLDVPSSVLIKLANFYNVSIDYILGQ 62 Query: 77 SPTVCSDISS 86 + Sbjct: 63 TNNSKRSNEK 72 >gi|254511223|ref|ZP_05123290.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221534934|gb|EEE37922.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 208 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PVD +G R+R R + E G+ + K E G L+ ++ LE Sbjct: 24 PVD--LGARVRELRKARNWTLEHAASQAGLARSTLSKIENGQMSPTFDALKKLATGLEIS 81 Query: 70 ISFFFD 75 + F Sbjct: 82 VPQLFT 87 >gi|169335178|ref|ZP_02862371.1| hypothetical protein ANASTE_01585 [Anaerofustis stercorihominis DSM 17244] gi|169257916|gb|EDS71882.1| hypothetical protein ANASTE_01585 [Anaerofustis stercorihominis DSM 17244] Length = 172 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 52/107 (48%), Gaps = 6/107 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPI 70 ++ +G RI+ R G+S +LGE +GI+ +Q+YE G +NR+ ++ I+ L Sbjct: 3 NLEIGNRIKQVRQEKGLSLRELGEIIGISGATIQRYENGLINRLKLPVIESIANALGVNP 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 S+ S + +++N + + + L F ++ + ++ Sbjct: 63 SWLIFKSKNKYKTLVNDKNTI-----SSENKDLLNKFNKLSPNRQKR 104 >gi|167461704|ref|ZP_02326793.1| Transcriptional regulator, XRE family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384015|ref|ZP_08057743.1| hypothetical protein PL1_2071 [Paenibacillus larvae subsp. larvae B-3650] gi|321151382|gb|EFX44571.1| hypothetical protein PL1_2071 [Paenibacillus larvae subsp. larvae B-3650] Length = 152 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 42/104 (40%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++GK I+ R +SQE+L + + + + K E+G+ L +++ L + + Sbjct: 8 IHIGKIIKQLRQKYKLSQEELAKGI-CSQAHISKIERGIQFPSGVMLYLLAQKLRISVDY 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 F+ + ++ + + + I D + + Sbjct: 67 LFNPENAAEDKERKQIKEMIRKSIRFNDYE--QALKIIADEQTQ 108 >gi|83951509|ref|ZP_00960241.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83836515|gb|EAP75812.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 143 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 5/101 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R GM+Q +L LG+ + ++K+E ++ A+RL ++ +L I + Sbjct: 31 GDRLAGAREASGMTQTQLARRLGVKEKTIEKWENDLSEPRANRLSMLAGLLNVSILWLIS 90 Query: 76 VS---PTVCSDISSEENNVMDFISTPDGLQ--LNRYFIQID 111 P + ++ E + D + +Q L R +I+ Sbjct: 91 GDGDAPEAPGESAASEATLDDLLRELRQVQAVLTRSAARIE 131 >gi|294629462|ref|ZP_06708022.1| helix-turn-helix domain-containing protein [Streptomyces sp. e14] gi|292832795|gb|EFF91144.1| helix-turn-helix domain-containing protein [Streptomyces sp. e14] Length = 388 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 32/86 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 + +RR +G++QE L E + + V ++E G ++ +L D+ Sbjct: 8 LAVRRRAVGLTQEALAERMQVDRSTVARWESGRTTPQPWMRPRLARLLRVDADGLNDLLT 67 Query: 79 TVCSDISSEENNVMDFISTPDGLQLN 104 + + + P+ + L Sbjct: 68 VRQTGDVDVHGALDHALLHPERIDLV 93 >gi|293397473|ref|ZP_06641725.1| conserved hypothetical protein [Serratia odorifera DSM 4582] gi|291420052|gb|EFE93329.1| conserved hypothetical protein [Serratia odorifera DSM 4582] Length = 138 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 11/119 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLES 68 I + KR++ R+ G +QE+L E +GI ++ YE G S + I+ +L+ Sbjct: 18 IMIPKRLKYARISNGYTQEQLAELVGIQGANSSSRLSSYEVGRTEPPFSLVVKIANLLDY 77 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 P +F+ + + SD+ N + + + + K K ++ + + Sbjct: 78 PEYYFYTIDDDLASDLLEMHRNRTNPTKNKF-------YSSVIEEKKLSKKVDEAKRLA 129 >gi|291443072|ref|ZP_06582462.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|291346019|gb|EFE72923.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 192 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 3/121 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P+P+ + + R+ R G S ++L G++ + + E+ A+ L Sbjct: 1 MGDAIEEPDPMGVRLAVRLADLRTEHGWSLDELARRSGVSRSTLSRLERCEVSPTATLLG 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + V +S + + + R + +R +++ Sbjct: 61 RLCTVYGRTMSRLLMEVEAEPPPLVPAARQT---VWRDEAAGFVRRSVSPPHPGLRAEVV 117 Query: 121 E 121 E Sbjct: 118 E 118 >gi|262282360|ref|ZP_06060128.1| predicted protein [Streptococcus sp. 2_1_36FAA] gi|262261651|gb|EEY80349.1| predicted protein [Streptococcus sp. 2_1_36FAA] Length = 96 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+++L R G SQ ++ E LG T Q + +E + + L +++ + + Sbjct: 3 MLGKQLKLLREQKGYSQNQISEYLGTTRQTISNWENDKTIIDSHSLIRLADFYQISLDEL 62 >gi|49477369|ref|YP_035961.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49328925|gb|AAT59571.1| transcriptional regulator, MerR family [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 181 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|49478178|ref|YP_037436.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329734|gb|AAT60380.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 374 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 P + + + + + + ++ + + + ++ I+ + Sbjct: 64 LISYKPQMEQEDIKDLYHRLAEAFSEKPFDEVMMECREIVKKYYSCFPLLIQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDTDRRIEILEEAM 141 >gi|298206777|ref|YP_003714956.1| transcriptional regulator [Croceibacter atlanticus HTCC2559] gi|83849409|gb|EAP87277.1| transcriptional regulator [Croceibacter atlanticus HTCC2559] Length = 240 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R SQ+ + E L I+ E N V + +S++ + F Sbjct: 4 IGQRIKSLRKEKKYSQQFIAEKLNISQSAYSLIESAHNNVMIGHVLTLSKLYDVSTDFIL 63 Query: 75 DVS 77 Sbjct: 64 KGE 66 >gi|301053367|ref|YP_003791578.1| MerR family transcriptional regulator [Bacillus anthracis CI] gi|300375536|gb|ADK04440.1| transcriptional regulator, MerR family [Bacillus cereus biovar anthracis str. CI] Length = 181 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|257888764|ref|ZP_05668417.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257824818|gb|EEV51750.1| transcriptional regulator [Enterococcus faecium 1,141,733] Length = 72 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 27/59 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +RIR R ++Q+++ + L ++ +YE G + + ++ + + + + Sbjct: 3 QRIRDLREDNDLTQQQIAKLLNVSQSTYSRYENGELDIPMKTVIKLAHYYNTSVDYLVN 61 >gi|91780190|ref|YP_555397.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91692850|gb|ABE36047.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 91 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 31/85 (36%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + N G +R R + G SQE+L E G+ V + E+G + ++ I Sbjct: 4 IVRNFGAAVRRLRELQGWSQEQLAEYAGLNRSYVGEIERGSAIASIVTVDKLARAFGVSI 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFI 95 S I E + ++ Sbjct: 64 ECLLRSSSDQAGVILPEASAPINPA 88 >gi|307323870|ref|ZP_07603079.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306890319|gb|EFN21296.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 201 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 2/108 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V VG R+R R G + +L E GI+ + + E G + L +++ + Sbjct: 12 VLTAVGPRLRALRRTRGTTLAQLSETTGISLSTLSRLESGQRKPTLELLLPLAKAYGVQL 71 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVR 116 T + P L + QI + + Sbjct: 72 DELVGAPATGDPRVHPRPFTRHGQTFVPLTRYLGGLHAYKQIMPPRPQ 119 >gi|306838790|ref|ZP_07471622.1| XRE family transcriptional regulator [Brucella sp. NF 2653] gi|306406126|gb|EFM62373.1| XRE family transcriptional regulator [Brucella sp. NF 2653] Length = 73 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 24/69 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ R G++QE + G + Q + E+G L +++ L F Sbjct: 5 VGRNFARLRREKGLTQEDVEARSGFSQQYLSGLEQGRRNPTVITLYELAQALGVSHVELF 64 Query: 75 DVSPTVCSD 83 S Sbjct: 65 KPDEKSESS 73 >gi|319776198|ref|YP_004138686.1| putative phage repressor [Haemophilus influenzae F3047] gi|301168972|emb|CBW28569.1| unnamed protein product [Haemophilus influenzae 10810] gi|317450789|emb|CBY87011.1| Putative phage repressor [Haemophilus influenzae F3047] Length = 219 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 37/84 (44%), Gaps = 1/84 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRIR RR L ++Q+ + + ++ + ++E + + L +S VLE + + Sbjct: 6 IGKRIRQRRTELKLTQKDVANAIKGVSHVAISQWESDTTKPNSENLVDLSTVLECDLLWL 65 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 + + + + + + Sbjct: 66 LRGEGSSSNVMPASIGTNKVPLIS 89 >gi|297203904|ref|ZP_06921301.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297148527|gb|EDY57126.2| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 234 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R+ G+ L +G++ V + E G ++ S L I+ L + FD Sbjct: 34 GARIRQARLERGLGLRALAREVGVSASLVSQIETGKSQPSVSTLYAITTALGISVEALFD 93 Query: 76 VSPTVCSDISS 86 T + + Sbjct: 94 GRETAVAASEA 104 >gi|264679172|ref|YP_003279079.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262209685|gb|ACY33783.1| transcriptional regulator, XRE family [Comamonas testosteroni CNB-2] Length = 131 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 15/132 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R LGMSQ G T Q + +E G ++ +S + + Sbjct: 1 MTLGERLREERNRLGMSQPAFAALAGTTKQTLFSWESGKTAPDGFQMTALSA-HGVDLLY 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS---- 128 T + + D L+L + + RQ +I + + Sbjct: 60 VLAGHRTPAVHPAEAL--------SDDELRLLHGYRSC-NADGRQHLIRSAELLSAAHAM 110 Query: 129 -SEKKYRTIEEE 139 +E + + +++ Sbjct: 111 SAEDRKQALQDR 122 >gi|259415871|ref|ZP_05739791.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259347310|gb|EEW59087.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 209 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 2/73 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G + P +D +G R+R R + E G+ + K E G L+ + Sbjct: 17 GEQSAPEALD--LGARVRELRKQRDWTLEHAASQAGLARSTLSKIENGQMSPTYEALKKL 74 Query: 63 SEVLESPISFFFD 75 + L+ + F Sbjct: 75 AVGLQISVPQLFT 87 >gi|240103181|ref|YP_002959490.1| HTH-type transcriptional regulator, putative [Thermococcus gammatolerans EJ3] gi|239910735|gb|ACS33626.1| HTH-type transcriptional regulator, putative [Thermococcus gammatolerans EJ3] Length = 65 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G++QE+L + LG+T Q + EKG I+ I F Sbjct: 3 NRLRELREAKGLTQEELAKALGVTRQTIIAIEKGKYDPSLRLAFKIARFFGLKIEDVF 60 >gi|228933114|ref|ZP_04095975.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826555|gb|EEM72328.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 181 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|225571094|ref|ZP_03780111.1| hypothetical protein CLOHYLEM_07194 [Clostridium hylemonae DSM 15053] gi|225160175|gb|EEG72794.1| hypothetical protein CLOHYLEM_07194 [Clostridium hylemonae DSM 15053] Length = 158 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 3/92 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 ++I R ++QE+L E L ++ Q V K+E G ++ +S V + Sbjct: 10 EKILTLRKSNDLTQEELAEKLNVSRQSVSKWESGQAVPELEKIVALSSVFNVTTDYLLKP 69 Query: 75 -DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 ++ E+ + ++ R Sbjct: 70 AEIDELSVKTNILEKQQQQILLREKQRNKIVR 101 >gi|182418649|ref|ZP_02949926.1| DNA-binding protein [Clostridium butyricum 5521] gi|237668530|ref|ZP_04528514.1| DNA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377511|gb|EDT75065.1| DNA-binding protein [Clostridium butyricum 5521] gi|237656878|gb|EEP54434.1| DNA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 179 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 38/90 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR+ RM ++QE+L ++ + + E + + L I E+L + + Sbjct: 1 MQIGEKIRILRMEKQLTQEELANRCELSKGFISQVENDLTSPSIATLIDILEILGTNLPD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 FF + + ++ D L Sbjct: 61 FFSDTKEEKVTYTKDDMFEKDDDDLKYSLM 90 >gi|163815728|ref|ZP_02207100.1| hypothetical protein COPEUT_01909 [Coprococcus eutactus ATCC 27759] gi|158449033|gb|EDP26028.1| hypothetical protein COPEUT_01909 [Coprococcus eutactus ATCC 27759] Length = 298 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 35/76 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I +R ++Q +L + LG + + V K+E+G+ S + ++LE I+ F Sbjct: 6 IGRYIAEKRKRARLTQRQLADKLGKSDKSVSKWERGICLPDVSVYMELCKILEISINEFL 65 Query: 75 DVSPTVCSDISSEENN 90 + + + Sbjct: 66 AGEDISEDSVREKSDE 81 >gi|143833|gb|AAA22893.1| PBSX repressor [Bacillus subtilis] Length = 113 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 12/121 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R +QE++ +G++ + YE G + LQ +++ + + Sbjct: 1 MIGSRLKSLRGKR--TQEEIVSHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYL 58 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D + + LQ+ +Q + +Q+ IE + + EK Sbjct: 59 LTGKDKKSD----------DDMFSDPDLQVAYRDMQDFSPESKQQAIEFINYLKEKEKNR 108 Query: 134 R 134 + Sbjct: 109 K 109 >gi|51596205|ref|YP_070396.1| prophage transcriptional regulator [Yersinia pseudotuberculosis IP 32953] gi|186895226|ref|YP_001872338.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|51589487|emb|CAH21109.1| putative prophage transcriptional regulator [Yersinia pseudotuberculosis IP 32953] gi|186698252|gb|ACC88881.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis PB1/+] Length = 122 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 15/134 (11%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + NKK + +G R+R R G SQE + G++ + KYE+G A+ L Sbjct: 1 MPNKK--EELLFLIGARLREEREKTGESQEAMATNFGVSTRTWGKYERGETVPDAATLAL 58 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ + + T IS+EE L+L + + D R I Sbjct: 59 LNAQYGLDVMYILTGKRTPPDTISTEE------------LKLVENY-RAMDDSARLNIQA 105 Query: 122 LVRSIVSSEKKYRT 135 + + S+ + ++ Sbjct: 106 VGDAFAQSKPQLKS 119 >gi|332363707|gb|EGJ41487.1| XRE family transcriptional regulator [Streptococcus sanguinis SK49] Length = 168 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 31/81 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + D Sbjct: 61 LLLEDSDKAELKPVLSEDEKD 81 >gi|320105393|ref|YP_004180983.1| Cupin 2 barrel domain-containing protein [Terriglobus saanensis SP1PR4] gi|319923914|gb|ADV80989.1| Cupin 2 conserved barrel domain protein [Terriglobus saanensis SP1PR4] Length = 233 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ M +LG G++ + + E G L I+ V +++ Sbjct: 26 KRIGERIKALRLKKSMGLVELGRHTGLSASFLSQLETGRVVPTLRNLARIAMVFSKDLNY 85 Query: 73 FFDVSPTV 80 FF+ P Sbjct: 86 FFEPEPRT 93 >gi|295103878|emb|CBL01422.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii SL3/3] Length = 210 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G+SQ +L LG+T Q V K+E G + S + I+E+L + + + Sbjct: 7 LKQCRKKQGVSQAELASRLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADYLLGLYR 66 Query: 79 TVCSDISSEENNVMDFIST 97 V + + EE + + Sbjct: 67 PVSNVSAPEERFFGSYTES 85 >gi|167588649|ref|ZP_02381037.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ubonensis Bu] Length = 180 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 2/94 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L + G+T + K E+G++ + +S+ L + F Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLFSER 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + S G + F I Sbjct: 64 HNRELITVTRADERAAPGSRSAGH--AQAFESIA 95 >gi|167565153|ref|ZP_02358069.1| aldehyde dehydrogenase-like protein [Burkholderia oklahomensis EO147] Length = 183 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 35/91 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V R+R RM G+SQ +L + G+T + E+ L+ + E + ++ F Sbjct: 4 EVATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQSRVSPSVGSLKKLLECIPMSLAEF 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + S + + + G L Sbjct: 64 FTFEVDEDRSVVSRRGEMPNLGNDAIGFYLA 94 >gi|160942797|ref|ZP_02090038.1| hypothetical protein FAEPRAM212_00274 [Faecalibacterium prausnitzii M21/2] gi|158445962|gb|EDP22965.1| hypothetical protein FAEPRAM212_00274 [Faecalibacterium prausnitzii M21/2] Length = 210 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G+SQ +L LG+T Q V K+E G + S + I+E+L + + + Sbjct: 7 LKQCRKKQGVSQAELASRLGVTQQAVGKWESGKSSPDPSTVARIAELLNTTADYLLGLYR 66 Query: 79 TVCSDISSEENNVMDFIST 97 V + + EE + + Sbjct: 67 PVSNVSAPEERFFGSYTES 85 >gi|148378345|ref|YP_001252886.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|168184831|ref|ZP_02619495.1| DNA-binding protein [Clostridium botulinum Bf] gi|237793662|ref|YP_002861214.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|148287829|emb|CAL81895.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|182672129|gb|EDT84090.1| DNA-binding protein [Clostridium botulinum Bf] gi|229261583|gb|ACQ52616.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 181 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++IR R ++ + L E G++ + + E + + + L+ I++ L PI++F Sbjct: 4 EIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYF 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|152977654|ref|YP_001377171.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026406|gb|ABS24176.1| putative transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 120 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 53/117 (45%), Gaps = 5/117 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR+ R +SQE+L + + + E+G + S L I+ L+ + FF Sbjct: 8 IGLQIRILRKSKNLSQEELAFKANLHPTYIGQVERGEKNLTVSSLNTITTALDITLEEFF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 ++ ++ D + + ++L + +V ++KI E++ ++ +K Sbjct: 68 SF-IEPSNNKNNINFKSNDLLPYQNIIRLLQEI----NVNEQRKIFEIIEKLIEWKK 119 >gi|317122090|ref|YP_004102093.1| XRE family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592070|gb|ADU51366.1| transcriptional regulator, XRE family [Thermaerobacter marianensis DSM 12885] Length = 216 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + VGKRIR R G+S L G++ + + E + + I+ L ++ Sbjct: 1 MEVGKRIRDLRRQRGISLRDLARRSGVSKAYLSQLENDPARKPSVDVILRIATALGVSLT 60 Query: 72 FFFDVSPTVCSDISS 86 P V D + Sbjct: 61 ELLGPLPAVEGDAAR 75 >gi|313906668|ref|ZP_07839986.1| plasmid maintenance system antidote protein, XRE family [Eubacterium cellulosolvens 6] gi|313468490|gb|EFR63874.1| plasmid maintenance system antidote protein, XRE family [Eubacterium cellulosolvens 6] Length = 107 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 15/117 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG RI+ R G +QE+L L + + YE V A L +S + + Sbjct: 4 VGGRIKKLRTDAGYTQEELAIELHLEGKSAISNYENNSRGVSAEMLTQLSRLFHVSADYI 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + D + + K ++ +EL+R I E Sbjct: 64 LNGDSPDNLD--------------HIVNEAIEILNNLKTDKAKKSALELLRQIQILE 106 >gi|308181643|ref|YP_003925771.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047134|gb|ADN99677.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 223 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R M+Q + L ++ Q + +E G + L IS + + Sbjct: 6 NLKIIRQQKKMTQTDIATQLHVSRQTISSWENGRSYPDIGMLVQISMAYDFSVDQLLKGD 65 >gi|302872413|ref|YP_003841049.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302575272|gb|ADL43063.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 285 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 11/124 (8%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +S+ L E LG++ Q + YE G L I++ + + S Sbjct: 7 RLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIADYFNVTVDYLIGRS 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 + + + + ++ ++++++ +KI EK+ T Sbjct: 67 EYRTVEEQISKRSKFERTVGESLKEVIMN-KKLEEIRRDEKI----------EKETGTFI 115 Query: 138 EECM 141 EE + Sbjct: 116 EEIL 119 >gi|291458992|ref|ZP_06598382.1| HTH-type transcriptional regulator PuuR [Oribacterium sp. oral taxon 078 str. F0262] gi|291418246|gb|EFE91965.1| HTH-type transcriptional regulator PuuR [Oribacterium sp. oral taxon 078 str. F0262] Length = 126 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 16/121 (13%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R + G+S KL + GI + + + +++ I V+ +S FF V Sbjct: 14 SRITELRKLRGLSVYKLAKLSGIPQSTIATWYQKNLYPPLDKVERICRVMGISLSDFFRV 73 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 S + + + D + R ++ L+R + E Sbjct: 74 SEEEGKEEEALLLEHWRRL----------------DEEERSALLLLIRHLKGRESARSAA 117 Query: 137 E 137 E Sbjct: 118 E 118 >gi|282882924|ref|ZP_06291529.1| DNA-binding protein [Peptoniphilus lacrimalis 315-B] gi|300814135|ref|ZP_07094418.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281297335|gb|EFA89826.1| DNA-binding protein [Peptoniphilus lacrimalis 315-B] gi|300511792|gb|EFK39009.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 179 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ G++QE+L +T + + E+ + L I E L + S Sbjct: 1 MEIGNKIKELRVASGLTQEELATRSELTKGFISQIERDLTSPSVDSLLDILEALGTSPSE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF S ++ + Sbjct: 61 FFSKDKNERIIFSEDDYFEYE 81 >gi|254497228|ref|ZP_05110037.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254353552|gb|EET12278.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 84 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+ + I +G++IR R G SQE++ + G+ + + E+G + L I+ Sbjct: 2 KVKHQNLIKIGEKIRTLRTSEGYSQEEIADASGMGRTYMGRVERGEQNISIQNLIQIAFA 61 Query: 66 LESPISFF 73 L + Sbjct: 62 LNVEVGVL 69 >gi|227509610|ref|ZP_03939659.1| helix-turn-helix XRE-family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190972|gb|EEI71039.1| helix-turn-helix XRE-family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 125 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 32/72 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R +SQ+ L + L ++ Q + K+E+G + L ++E+ + Sbjct: 8 KQLKKYRAANNLSQDDLAKKLFVSRQAISKWEQGDATPDLNNLVKLAEIFNISLDTLVLG 67 Query: 77 SPTVCSDISSEE 88 + S + + Sbjct: 68 ASETKSTVDQNQ 79 >gi|149173147|ref|ZP_01851778.1| restriction-modification system regulatory protein, putative [Planctomyces maris DSM 8797] gi|148847953|gb|EDL62285.1| restriction-modification system regulatory protein, putative [Planctomyces maris DSM 8797] Length = 73 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 26/67 (38%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + G+R+R R G SQE + + E+G V ++ I++ L Sbjct: 6 DILKRFGERVRELRKKQGYSQENFAYACELDRTYMGGIERGQRNVALRNIERIADTLGIS 65 Query: 70 ISFFFDV 76 ++ D Sbjct: 66 VAELMDG 72 >gi|28379424|ref|NP_786316.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|254557562|ref|YP_003063979.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300768681|ref|ZP_07078578.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28272263|emb|CAD65174.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|254046489|gb|ACT63282.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300493773|gb|EFK28944.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 223 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R M+Q + L ++ Q + +E G + L IS + + Sbjct: 6 NLKIIRQQKKMTQTDIATQLHVSRQTISSWENGRSYPDIGMLVQISMAYDFSVDQLLKGD 65 >gi|89071275|ref|ZP_01158446.1| transcriptional regulator, XRE family protein [Oceanicola granulosus HTCC2516] gi|89043205|gb|EAR49438.1| transcriptional regulator, XRE family protein [Oceanicola granulosus HTCC2516] Length = 134 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 12/121 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G+SQ+ L LG+ Q ++ +E + A++LQ +S +L + + Sbjct: 21 GDRLAAAREAAGLSQKDLARRLGVKHQTLKHWEDDIAEPRANKLQMLSGLLSVSLRWLLT 80 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + E + L R + + + EK+ R Sbjct: 81 GHGEGVEPPGAAEIAPDVSAVLAEMRAL------------RAQADRMAERLGVLEKQLRR 128 Query: 136 I 136 Sbjct: 129 A 129 >gi|298207938|ref|YP_003716117.1| hypothetical protein CA2559_06790 [Croceibacter atlanticus HTCC2559] gi|83850579|gb|EAP88447.1| hypothetical protein CA2559_06790 [Croceibacter atlanticus HTCC2559] Length = 187 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I+ R G+SQE+L + ++ + +Q+ E N L I L+ I Sbjct: 3 HLGQKIKDARKQKGLSQEELADSAKVSLRTIQRIETNKNEPRGKTLHLICTALQLNIEDL 62 >gi|312164184|gb|ADQ38323.1| transcriptional regulator [Azospirillum brasilense] Length = 75 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + VD NVG R++ R +SQ +L + G+T + E+ S L+ + + + Sbjct: 4 DAVDFNVGARLKQVREAHALSQRQLAQRAGVTNGTISLIEQNRCSPSVSSLRKVLQGIPM 63 Query: 69 PISFFFDVSP 78 ++ FF Sbjct: 64 TLAEFFSSDD 73 >gi|304392640|ref|ZP_07374580.1| transcriptional regulator [Ahrensia sp. R2A130] gi|303295270|gb|EFL89630.1| transcriptional regulator [Ahrensia sp. R2A130] Length = 197 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 32/66 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G IR R ++ +L +G + + + E+G++ L+ ++ + PIS+ Sbjct: 17 MALGNEIRQLRKSRSLTLAELALRIGRSVGFISQIERGLSSPSIDDLRALAAAFDVPISW 76 Query: 73 FFDVSP 78 FF P Sbjct: 77 FFATEP 82 >gi|300854388|ref|YP_003779372.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434503|gb|ADK14270.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 181 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 41/94 (43%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G +IR R +S E+L E ++ + + E+ + + L I++ L +++ Sbjct: 1 MKFGFKIRKLRQEKSISIEQLAEMAKLSTGLISQVERNITGPSVTTLWKIAKALNVSMNY 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FFD + + ++ ++ ++ +L Sbjct: 61 FFDEDEYEEKDNVVRKDKRKMIILPNSKITYELL 94 >gi|296533827|ref|ZP_06896363.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC 49957] gi|296265845|gb|EFH11934.1| XRE family transcriptional regulator [Roseomonas cervicalis ATCC 49957] Length = 192 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 32/92 (34%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +G P+P++ + + R G+S E+L GI+ + + E+ A+ L Sbjct: 1 MGESSTPDPLEARLAACLARLRAEQGLSLEELAGRTGISRATLSRLERAEASPTAAMLGR 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 + +S+ + + Sbjct: 61 LCTAYGRTLSWMMGEVEAQAPAVVRDAAQPRW 92 >gi|229155408|ref|ZP_04283518.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] gi|228628123|gb|EEK84840.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] Length = 181 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|190015098|ref|YP_001966668.1| putative transcriptional regulator, helix-turn-helix domain containing protein [Bacillus cereus] gi|190015364|ref|YP_001966993.1| putative transcriptional regulator, helix-turn-helix domain containing protein [Bacillus cereus] gi|218848302|ref|YP_002455035.1| transcriptional regulator [Bacillus cereus AH820] gi|116584774|gb|ABK00889.1| putative transcriptional regulator, helix-turn-helix domain containing protein [Bacillus cereus] gi|116585045|gb|ABK01154.1| putative transcriptional regulator, helix-turn-helix domain containing protein [Bacillus cereus] gi|218540353|gb|ACK92749.1| transcriptional regulator [Bacillus cereus AH820] Length = 64 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R+ GM+Q +L + ++ Q + EKG I + L ++ F Sbjct: 4 KVKRIRLEKGMTQGELAKITNVSRQTIGLIEKGEYNPSLKLCIEICKSLGVTLNDLFWEE 63 Query: 78 P 78 Sbjct: 64 D 64 >gi|108936762|emb|CAK48822.1| Sse9I control protein [Sporosarcina sp.] Length = 92 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ +R R+ G+SQE L E +G+ + E+G ++ ++ L+ Sbjct: 19 GQNLRDLRVARGLSQEALAELIGVHRTYMGGLERGERNPTLKSVERVAAHLDVDPLSLLT 78 Query: 76 VS 77 Sbjct: 79 AE 80 >gi|332360161|gb|EGJ37975.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 169 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 31/81 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 2 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 61 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + D Sbjct: 62 LLLEESDKPEINPVLSEDEKD 82 >gi|319654646|ref|ZP_08008727.1| hypothetical protein HMPREF1013_05349 [Bacillus sp. 2_A_57_CT2] gi|317393712|gb|EFV74469.1| hypothetical protein HMPREF1013_05349 [Bacillus sp. 2_A_57_CT2] Length = 113 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 6/119 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R +QE + L ++ YE + L+ +SE+ + I + Sbjct: 1 MLGDRLKKLRNDHNWTQEDVARKLELSRGTYAHYEINKRQPDYDTLKKLSEIFDVSIDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + SSE+ +F+ + + Q++I+ I +KK Sbjct: 61 ITGNKYS----SSEDEMWKEFLDPKTQVFFKDLLDA--PEEKIQELIKFWEIIRDRDKK 113 >gi|314935353|ref|ZP_07842706.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] gi|313656688|gb|EFS20427.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] Length = 137 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G +I+ R MSQEKL E LG++ + +E+ V+ + I+++ + Sbjct: 1 METKIGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWERQVSNPDLKTILEITKLFNVSL 60 Query: 71 SFFFDVSP 78 + Sbjct: 61 NQLIKGVE 68 >gi|257883805|ref|ZP_05663458.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] gi|257819643|gb|EEV46791.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,501] Length = 221 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 32/60 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + + L PI F Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHQTLGLPIDF 60 >gi|222081494|ref|YP_002540857.1| transcriptional regulator [Agrobacterium radiobacter K84] gi|221726173|gb|ACM29262.1| transcriptional regulator [Agrobacterium radiobacter K84] Length = 394 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 21/131 (16%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+RL R G +Q E +G+ + EKG RV +Q ++ + + + Sbjct: 12 ELGERLRLARESTGKTQADAAEAIGVARTTLVAMEKGQRRVKIGEMQQLARLYGTTANAL 71 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 ++L F ++ + + R + E + + Sbjct: 72 MRKE--------------------SVHIELVPKFRKLAENEERP-VAEAAELMAQLVRAE 110 Query: 134 RTIEEECMVEQ 144 +E +E Sbjct: 111 VELENLLGIEH 121 >gi|222096786|ref|YP_002530843.1| transcriptional regulator [Bacillus cereus Q1] gi|221240844|gb|ACM13554.1| transcriptional regulator [Bacillus cereus Q1] Length = 374 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP--------DGLQLNRYFIQIDDVKVRQKIIEL-V 123 P + + + + + + + ++ + + + ++ ++ + Sbjct: 64 LISYKPQMEQEDIKDLYHRLAEAFSEEPFDEVMMECREIIKKYYSCFPLLLQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDTDRRIEILEEAM 141 >gi|221195133|ref|ZP_03568189.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] gi|221185036|gb|EEE17427.1| helix-turn-helix domain protein [Atopobium rimae ATCC 49626] Length = 244 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R+ +QE+L L ++ Q V K+E +N S L +++ L I Sbjct: 8 LGRRIARLRLAKAATQERLARELSVSPQAVSKWENDINYPDISLLPQLAQFLGVSIDELL 67 Query: 75 DVSPTVCSDISS 86 + T Sbjct: 68 RGASTQERKGLD 79 >gi|75674859|ref|YP_317280.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419729|gb|ABA03928.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 259 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 10/137 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGK +R R+ G+S E+L + G++ + + E G + L I L P + Sbjct: 76 VIVGKNLRRIRLRQGLSLERLAKQSGVSRAMLGQIETGKSTPTIGLLWKICTSLTVPFAS 135 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV----- 127 V I + +S+ G +R D + R + EL + Sbjct: 136 LIAVGD--PEGIIVLRRDGSKLLSSNQGRFTSRALFPFDSER-RTEFYEL--RLAPLYCE 190 Query: 128 SSEKKYRTIEEECMVEQ 144 ++E E +V + Sbjct: 191 NAEAHAAGTRENLVVAK 207 >gi|78049702|ref|YP_365877.1| putative DNA binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325927530|ref|ZP_08188768.1| transcriptional regulator [Xanthomonas perforans 91-118] gi|78038132|emb|CAJ25877.1| putative DNA binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542123|gb|EGD13627.1| transcriptional regulator [Xanthomonas perforans 91-118] Length = 66 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G SQ +LGE LG++ Q + E G I+ + I F Sbjct: 3 SRVRELREANGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 >gi|25010546|ref|NP_734941.1| hypothetical protein gbs0475 [Streptococcus agalactiae NEM316] gi|23094899|emb|CAD46119.1| Unknown [Streptococcus agalactiae NEM316] Length = 112 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 30/73 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G++Q++L + + + Q + +EKG ++ ++ V + Sbjct: 4 EKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKGSRNPKHKSIEKLANVFNVSTDYLLGN 63 Query: 77 SPTVCSDISSEEN 89 + + E Sbjct: 64 TDLKNPNDLDIEK 76 >gi|328944742|gb|EGG38903.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 168 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKVVELSKIFQVTTDY 60 Query: 73 -FFDVSPTVCSDISSEENNVMDF 94 + S E+ + Sbjct: 61 LLLEDSDKPKIKPVLSEDEKNRY 83 >gi|325523992|gb|EGD02186.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 205 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 7/103 (6%) Query: 1 MVGNKKIPNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M + P ++ + +R+R R G + + L G++ + E+ A Sbjct: 1 MQESTSAPTDEAGINARIARRVRDLRTGQGYTLDALAARSGVSRSMISLIERASASPTAV 60 Query: 58 RLQHISEVLESPISFFFDVSPTVCSDIS----SEENNVMDFIS 96 L ++ L ++ F +++ D S Sbjct: 61 VLDKLAAGLGVSLAGLFGGERDDVRAEPLVRRAQQAEWRDPAS 103 >gi|310827041|ref|YP_003959398.1| hypothetical protein ELI_1449 [Eubacterium limosum KIST612] gi|308738775|gb|ADO36435.1| hypothetical protein ELI_1449 [Eubacterium limosum KIST612] Length = 183 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 5/109 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ + K I+ R +S E+L G++ + + E+G S L +S + Sbjct: 2 DTMNQIIAKNIKRLREERKLSMEELARLSGVSKSMLAQIERGEGNPTISTLWKLSNGMGV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 P + + + + + DG + + D + R+ Sbjct: 62 PFDAL---TVRPKNPYEIVKTAELQPLLEDDGR--VKNYALFPDDENRR 105 >gi|294617990|ref|ZP_06697595.1| helix-turn-helix domain protein [Enterococcus faecium E1679] gi|291595799|gb|EFF27087.1| helix-turn-helix domain protein [Enterococcus faecium E1679] Length = 190 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 25/72 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ I++ R M+Q L I+ + E L I+ L+ I Sbjct: 1 MDIGRNIKIARKQKKMTQNDLAIKASISRSYLADVEGNRYNPSIETLDSIARALDVQIGT 60 Query: 73 FFDVSPTVCSDI 84 S I Sbjct: 61 LLSDSSKKNFSI 72 >gi|260161306|emb|CAZ39274.1| hypothetical protein [Streptococcus suis] gi|260161745|emb|CAZ39290.1| hypothetical protein [Streptococcus suis] Length = 136 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 53/124 (42%), Gaps = 3/124 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFFF 74 G++++ R LGMSQ++L +G+T + + YE +R ++E L +++ Sbjct: 4 GEKVKAERTKLGMSQDELAAKIGVTRRIIGSYENDKSRPRGMERYKKLAESLNVNVNYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIELVRSIVSSEKK 132 +D+ + + ++ F ++ D +R+ + + + + ++K Sbjct: 64 SEDDAFIADVEDKYGRRGARQAQELLAEVTGLFAGGEMADEDMREMVDAIQEAYLIAKKN 123 Query: 133 YRTI 136 + Sbjct: 124 NKKY 127 >gi|83310829|ref|YP_421093.1| transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82945670|dbj|BAE50534.1| Predicted transcriptional regulator [Magnetospirillum magneticum AMB-1] Length = 164 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 2/98 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++R R+ ++QE+L E + T + + E+G L I++ L++P++FF Sbjct: 51 QIGLKVRAARLKRSLTQEQLAERVDKTAESISNIERGHVTPPLDTLARIAQELDTPMTFF 110 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 F+ T + + G +L +++ Sbjct: 111 FEDIGTPRAVARNRLELEHRL--RSLGEELTDAELRLS 146 >gi|53725534|ref|YP_103601.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|67643873|ref|ZP_00442616.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|76811218|ref|YP_334564.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|121600358|ref|YP_992235.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126450800|ref|YP_001081418.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134280073|ref|ZP_01766784.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|167000869|ref|ZP_02266674.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167739889|ref|ZP_02412663.1| DNA-binding protein [Burkholderia pseudomallei 14] gi|167847008|ref|ZP_02472516.1| DNA-binding protein [Burkholderia pseudomallei B7210] gi|167895592|ref|ZP_02482994.1| DNA-binding protein [Burkholderia pseudomallei 7894] gi|254175429|ref|ZP_04882089.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254191730|ref|ZP_04898233.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254196114|ref|ZP_04902539.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|254202294|ref|ZP_04908657.1| DNA-binding protein [Burkholderia mallei FMH] gi|254207627|ref|ZP_04913977.1| DNA-binding protein [Burkholderia mallei JHU] gi|254259704|ref|ZP_04950758.1| DNA-binding protein [Burkholderia pseudomallei 1710a] gi|254356472|ref|ZP_04972748.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|52428957|gb|AAU49550.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|76580671|gb|ABA50146.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|121229168|gb|ABM51686.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126243670|gb|ABO06763.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134248080|gb|EBA48163.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|147746541|gb|EDK53618.1| DNA-binding protein [Burkholderia mallei FMH] gi|147751521|gb|EDK58588.1| DNA-binding protein [Burkholderia mallei JHU] gi|148025469|gb|EDK83623.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|157939401|gb|EDO95071.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|160696473|gb|EDP86443.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|169652858|gb|EDS85551.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|238525329|gb|EEP88757.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|243063295|gb|EES45481.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|254218393|gb|EET07777.1| DNA-binding protein [Burkholderia pseudomallei 1710a] Length = 195 Score = 48.3 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 4/91 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DINQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVS 61 Query: 70 ISFFFDVS----PTVCSDISSEENNVMDFIS 96 ++ F+ ++E+ D S Sbjct: 62 LASLFEDDRAARAASPLSRATEQPVWKDPAS 92 >gi|315283384|ref|ZP_07871592.1| DNA-binding protein [Listeria marthii FSL S4-120] gi|313612974|gb|EFR86908.1| DNA-binding protein [Listeria marthii FSL S4-120] Length = 118 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 49/113 (43%), Gaps = 2/113 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R ++Q++L +G T + KYE +R L ++E+L + F Sbjct: 4 LEFGEKLIHLRKKNRLTQKQLAVKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDF 63 Query: 73 FFDV-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 D + + + + + L+L + + D++ + ++I + + Sbjct: 64 LLDDVAGLREKNSVNAFPLIGNPELEKWYLELPYTYSE-DELLMLKRIADAIE 115 >gi|304439390|ref|ZP_07399302.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372172|gb|EFM25766.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 67 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RI+ R MSQE L +G+ + + E G +I++V I Sbjct: 1 MISNRIKEFRARNSMSQEDLANAVGVRRETIGNLENGRYNPSLVLAWNIAKVFGVTIEEI 60 Query: 74 FDVSPTV 80 F + Sbjct: 61 FTIYNDD 67 >gi|297560986|ref|YP_003679960.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845434|gb|ADH67454.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 194 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R+R R G++ L E GI + + E G R G L +++ Sbjct: 6 DAVLSAVGPRLRALRHRHGITLTALSETTGIAVSTLSRLESGQRRPGLELLLPLAKAYNV 65 Query: 69 PISFF 73 P+ Sbjct: 66 PLDEL 70 >gi|227508343|ref|ZP_03938392.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192161|gb|EEI72228.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 209 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +I+ R G++Q L E L I+ + V +E G + S + +S+V + Sbjct: 4 LANKIKQYRTTKGLTQAGLAEKLSISRKTVSSWENGRSFPNFSTIIQLSKVFGIKVDDLL 63 >gi|225387513|ref|ZP_03757277.1| hypothetical protein CLOSTASPAR_01266 [Clostridium asparagiforme DSM 15981] gi|225046443|gb|EEG56689.1| hypothetical protein CLOSTASPAR_01266 [Clostridium asparagiforme DSM 15981] Length = 86 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R GM+QE+LGE +G + Q + E IS V I F Sbjct: 3 NRIKELRERRGMTQEQLGEMVGTSRQAINAIETEKFEPSIWLAYDISRVFGCAIEEVF 60 >gi|192359942|ref|YP_001982170.1| aldehyde dehydrogenase [Cellvibrio japonicus Ueda107] gi|190686107|gb|ACE83785.1| aldehyde dehydrogenase [Cellvibrio japonicus Ueda107] Length = 201 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 4/79 (5%) Query: 1 MVGNKKI--PNPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 M P +D + +G++++ R +SQ +L + GIT + E+G Sbjct: 1 MNEANDTVIPPSLDSHMDLGRKLKAIREAHNLSQRELAKRAGITNSSISMIEQGQVSPSV 60 Query: 57 SRLQHISEVLESPISFFFD 75 L+ I ++ FF Sbjct: 61 QSLERILTAFPLSLAEFFS 79 >gi|168206352|ref|ZP_02632357.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|168210038|ref|ZP_02635663.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|168214461|ref|ZP_02640086.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|168216835|ref|ZP_02642460.1| DNA-binding protein [Clostridium perfringens NCTC 8239] gi|182627149|ref|ZP_02954863.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|170662199|gb|EDT14882.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170711833|gb|EDT24015.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|170714083|gb|EDT26265.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|177907467|gb|EDT70136.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|182381078|gb|EDT78557.1| DNA-binding protein [Clostridium perfringens NCTC 8239] Length = 433 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 3/132 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ ++L IT Q+ E G + L++I+ L + + + Sbjct: 6 LGEKIKRRRKELNMTLKELAGE-RITPGQISLVESGRSNPSMDLLEYIAITLNTSVEYLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF--IQIDDVKVRQKIIELVRSIVSSEKK 132 + T I + + D ++ F I I +++ + Sbjct: 65 ETEKTQAEKICLYYEQIAESAILNDDIKKGEKFIEYAIYYADKYDLIYRKAKNLALKAEM 124 Query: 133 YRTIEEECMVEQ 144 Y EE + +Q Sbjct: 125 YLKSEEYVLAQQ 136 >gi|107022224|ref|YP_620551.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116689169|ref|YP_834792.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105892413|gb|ABF75578.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU 1054] gi|116647258|gb|ABK07899.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 206 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 4/100 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R + G + + L G++ + E+ A L ++ L + Sbjct: 14 INERIARRVRELRTVRGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSL 73 Query: 71 SFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + F D +P +++ D S L+ Sbjct: 74 AGLFGGDRDDAPAQPLARRAQQAEWRDPASGYVRRNLSPA 113 >gi|78222436|ref|YP_384183.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193691|gb|ABB31458.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 173 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 9/128 (7%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ ++G+ ++ R ++Q+ L + + + + K E+G L +S L Sbjct: 30 PLSCDIGRELKRLRKDRELTQKDLAARVDGGLDYTYIGKIERGEQLPSLKMLMGLSAALG 89 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 P+S FF + + S ++L++ Q+ ++++VR + Sbjct: 90 VPVSHFFQEESPATNSPLRMAD------SDVKSMELHKELRQLH-PDDIPLVVDIVRVLN 142 Query: 128 SSEKKYRT 135 K R Sbjct: 143 RHRKAERK 150 >gi|117927278|ref|YP_871829.1| XRE family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117647741|gb|ABK51843.1| transcriptional regulator, XRE family [Acidothermus cellulolyticus 11B] Length = 233 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 40/122 (32%), Gaps = 6/122 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++ P + +G IR +R + MS +L G++ + + E+G+ R A LQ Sbjct: 1 MRKTGRMATPFN--IGDFIREQRRLAQMSLRQLARIAGVSNPYLSQVERGLRRPSAEILQ 58 Query: 61 HISEVLESPISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 I+ L + + + + L + R Sbjct: 59 QIARGLRISAEALYVRAGILDERTADGAVVDAVLADPHLLERQKQTLLEIYDAFRKENSR 118 Query: 117 QK 118 + Sbjct: 119 RA 120 >gi|328463792|gb|EGF35345.1| hypothetical protein AAULH_12086 [Lactobacillus helveticus MTCC 5463] Length = 140 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 21/57 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RI+ R SQ +L + + Q + YE G Q +++ + + Sbjct: 2 NRIKELRQENKFSQIELANKVHASNQAISAYESGTREPKEPMWQALADFFNVSVDYL 58 >gi|291531440|emb|CBK97025.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 108 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 35/88 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRI RR LG+ Q ++ E + + ++ + E G + + + VL + +F Sbjct: 7 ALGKRIAKRRKELGLKQYEVCELIDVNYKYLSNIETGRSAPSLELIMSLCSVLNATPDYF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 + + + + + L Sbjct: 67 LLGTASAELYDNDIASKITPMTDEHKRL 94 >gi|266623508|ref|ZP_06116443.1| putative transcriptional regulatory protein [Clostridium hathewayi DSM 13479] gi|288864705|gb|EFC97003.1| putative transcriptional regulatory protein [Clostridium hathewayi DSM 13479] Length = 345 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR R M+QE++G LG+T V K+E G + + L I+ +L Sbjct: 1 MQLGQVIRKYRKNKNMTQEEMGGRLGVTAPAVNKWENGASMPDITLLAPIARLLGITTDI 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + ++ D + + Sbjct: 61 LLSFREELTAEEIKALVYEADSMLKEKPYE 90 >gi|240139328|ref|YP_002963803.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|240009300|gb|ACS40526.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] Length = 198 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 29/73 (39%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P++ +G +IR+ R +S L GI+ + K E G + + I+ L P Sbjct: 15 PLEKALGYQIRMLRRERDLSVGDLAAAAGISQGMISKIENGTISPSLASINAIASALNVP 74 Query: 70 ISFFFDVSPTVCS 82 I+ F Sbjct: 75 ITGLFTAFEETRD 87 >gi|291287633|ref|YP_003504449.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884793|gb|ADD68493.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 106 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 4/75 (5%) Query: 7 IPNPVDI----NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +P+ ++I +G R++ G SQ + + LGI+ ++ Y G L I Sbjct: 1 MPDEINIGKVSFLGSRLKDEIKRTGQSQLEFAKKLGISPSRLSNYVTGARLPDIFTLNSI 60 Query: 63 SEVLESPISFFFDVS 77 +++L P+ Sbjct: 61 ADLLGIPLDSLLSDD 75 >gi|206976223|ref|ZP_03237132.1| transcriptional regulator, MerR family [Bacillus cereus H3081.97] gi|206745677|gb|EDZ57075.1| transcriptional regulator, MerR family [Bacillus cereus H3081.97] Length = 119 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+ IRL R G++QE+L E + + + E+G + LQ I++ LE Sbjct: 8 VGENIRLLRKKRGLTQEELAERINLQQAYIGGVERGERNISMLTLQKIADGLEVSPD 64 >gi|323142578|ref|ZP_08077394.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413011|gb|EFY03914.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 101 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKRI+ R G++QE+L E LG+ + + E G + + E+ + + F Sbjct: 39 GKRIKALRKEHGLTQEQLAEQLGVAANTIARIETGNRGISIDLAIELVVRFETTLDYIFL 98 Query: 76 VSP 78 Sbjct: 99 GRE 101 >gi|225387540|ref|ZP_03757304.1| hypothetical protein CLOSTASPAR_01293 [Clostridium asparagiforme DSM 15981] gi|225046376|gb|EEG56622.1| hypothetical protein CLOSTASPAR_01293 [Clostridium asparagiforme DSM 15981] Length = 300 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + I+ R GMSQE+L L ++ Q V K+E L+ IS + + + Sbjct: 1 MLSETIKTLRKQAGMSQEQLAGRLNVSRQAVTKWETAAGTPDVENLRAISALFQISLDDL 60 Query: 74 FDVSPTVCSDIS 85 + + + Sbjct: 61 LENRSPIPPEQE 72 >gi|222107083|ref|YP_002547874.1| hypothetical protein Avi_6165 [Agrobacterium vitis S4] gi|221738262|gb|ACM39158.1| hypothetical protein Avi_6165 [Agrobacterium vitis S4] Length = 110 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 37/100 (37%), Gaps = 2/100 (2%) Query: 15 VGKRIRLRRMILGM-SQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+++ R+ G + E+ E +G+ +Q +E G + + + + + + Sbjct: 4 IGERLKMARLAAGFATVEEAAEAMGVNYQTYAGHENGRSGFKSDSVIRYCKKFKISTDWL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + S+ +L+R +I Sbjct: 64 LTGKGKGPRGEHDAAWEIFLIASSLPEEELDRA-KRIMQA 102 >gi|167903989|ref|ZP_02491194.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] Length = 195 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 36/91 (39%), Gaps = 4/91 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DINQLIARRVRTLRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVS 61 Query: 70 ISFFFDVS----PTVCSDISSEENNVMDFIS 96 ++ F+ ++E+ D S Sbjct: 62 LASLFEDDRAARAASPLSRATEQPVWKDPAS 92 >gi|153941053|ref|YP_001389709.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936949|gb|ABS42447.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295317797|gb|ADF98174.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 181 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++IR R ++ + L E G++ + + E + + + L+ I++ L PI++F Sbjct: 4 EIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYF 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|56478434|ref|YP_160023.1| anaerobic benzoate catabolism transcriptional regulator [Aromatoleum aromaticum EbN1] gi|56314477|emb|CAI09122.1| Putaive regulator of anaerobic benzoate metabolic operon consisting of shikimate kinase-like domain and a Helix-turn-helix domain [Aromatoleum aromaticum EbN1] Length = 285 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 35/73 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR R GM+++ L + G++ + + + E G + L+ I+ + P+ Sbjct: 10 LMLGERIRELRARRGMTRKALAQQSGVSERYLAQLETGHGNISIILLRQIALGMGLPLVD 69 Query: 73 FFDVSPTVCSDIS 85 P +++ Sbjct: 70 LVREEPEQPPELT 82 >gi|332980702|ref|YP_004462143.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698380|gb|AEE95321.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 80 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 35/67 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR G++QE+L +G+ + K E G R + + I++ L+ + FF+++ Sbjct: 14 LKERRNAKGLTQEQLAALIGVDRTTITKIENGSARPSVNNAKKIAQALDFDWTIFFNIND 73 Query: 79 TVCSDIS 85 S+ + Sbjct: 74 NQTSETA 80 >gi|323156532|gb|EFZ42685.1| repressor protein C2 [Escherichia coli EPECa14] Length = 211 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +++ L+ + Sbjct: 2 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLLK 61 Query: 76 VSPTVCS 82 ++ + Sbjct: 62 GEDSLSN 68 >gi|257887111|ref|ZP_05666764.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257823165|gb|EEV50097.1| transcriptional regulator [Enterococcus faecium 1,141,733] Length = 124 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R G +Q + + + QK E G + + L I++ F + Sbjct: 5 ERIKQLREERGYTQRDVANAVKLNISVYQKIELGSRPIRENELAVIADFFNVSTDFLLNR 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 + SEE+ + D I + L Sbjct: 65 TSDPTPPKRSEEDQLGDSILSHFRL 89 >gi|225569760|ref|ZP_03778785.1| hypothetical protein CLOHYLEM_05854 [Clostridium hylemonae DSM 15053] gi|225161230|gb|EEG73849.1| hypothetical protein CLOHYLEM_05854 [Clostridium hylemonae DSM 15053] Length = 160 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ R +QE + L I+ Q + K+E G L +S + + + Sbjct: 7 LGENLKSARQKKQFTQEYVSRQLNISRQAISKWETGKGYPDLDNLVLLSNLYDVSLDELM 66 Query: 75 D 75 + Sbjct: 67 N 67 >gi|225019958|ref|ZP_03709150.1| hypothetical protein CLOSTMETH_03917 [Clostridium methylpentosum DSM 5476] gi|224947322|gb|EEG28531.1| hypothetical protein CLOSTMETH_03917 [Clostridium methylpentosum DSM 5476] Length = 126 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 48/124 (38%), Gaps = 3/124 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + K+++ R G+ Q++L + + ++ + YE G + L ++ + + + Sbjct: 1 MELDKKLKDLRTYHGLKQKELAKAINVSSSTISGYENGK-NPDYNTLVKLANYFKVSVDY 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D SP + L+L ++ D ++ II ++ S K Sbjct: 60 LLDNSPVKL-SYDELNSEFQLSKRKYSSLKLIEMIKEL-DTSDQEAIIYILESFSEKIKY 117 Query: 133 YRTI 136 + I Sbjct: 118 QKEI 121 >gi|117621210|ref|YP_858380.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562617|gb|ABK39565.1| DNA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 230 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 52/135 (38%), Gaps = 6/135 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++ +R++ R LG S + G++ + + E+G + + L I+ Sbjct: 45 MNQHLAQRLKGLRSELGWSLDVAARETGVSKAMLGQIERGESSPTVATLWKIATGFRVSF 104 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR-SIVSS 129 S F + +P ++ + + +G+Q+ F + EL +++ Sbjct: 105 SSFIEPTPAEQGEVLYRTADAIRQQPAGEGMQVAPLF-----PYEGRFGFELFELTLLPG 159 Query: 130 EKKYRTIEEECMVEQ 144 ++ E + E Sbjct: 160 YQRESEPHEPGVTEH 174 >gi|134298619|ref|YP_001112115.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051319|gb|ABO49290.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 69 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 29/67 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R L ++QE+L + LG++ Q V E G I+++ I FD Sbjct: 3 NRLRELRNELNITQEQLADKLGVSRQTVISIENGKYNPSLILAYKIAKIFAISIEEAFDF 62 Query: 77 SPTVCSD 83 S + Sbjct: 63 SEVGMDE 69 >gi|257463340|ref|ZP_05627736.1| putative prophage repressor [Fusobacterium sp. D12] gi|317060917|ref|ZP_07925402.1| SOS-response transcriptional repressor [Fusobacterium sp. D12] gi|313686593|gb|EFS23428.1| SOS-response transcriptional repressor [Fusobacterium sp. D12] Length = 198 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++L R G+SQE+L + L +T + YE G + +L I E L S + FF Sbjct: 5 GKKLKLLRESKGLSQEELSDKLSVTKTTIGNYENGRRALTLEKLAEILEALNSSFNEFFS 64 Query: 76 VSPTVCSDI 84 + DI Sbjct: 65 LKELCTEDI 73 >gi|256848878|ref|ZP_05554312.1| predicted protein [Lactobacillus crispatus MV-1A-US] gi|256714417|gb|EEU29404.1| predicted protein [Lactobacillus crispatus MV-1A-US] Length = 68 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R+ GMSQ L + LG T V +E G + +Q I++ F Sbjct: 4 KLKILRVEKGMSQSDLAQALGTTQVTVSAWETGRSTPRPPMMQKIADYFGVSKDDIF 60 >gi|227820908|ref|YP_002824878.1| putative HTH transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] gi|227339907|gb|ACP24125.1| putative HTH transcriptional regulator, XRE family [Sinorhizobium fredii NGR234] Length = 469 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 9/140 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NK I G R+R R L ++Q + E LGI+ + E+ + L Sbjct: 1 MAENK-------IFAGPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLL 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ V + + + +++ + + P +L V ++ Sbjct: 54 KLASVYKVDLEELQGEAGGSLAELREVFADPLLAGELPGDQELIEVTEAA--PNVSGGVV 111 Query: 121 ELVRSIVSSEKKYRTIEEEC 140 +L R+ + + + E Sbjct: 112 KLYRAYREQASRLKDLAELL 131 >gi|154501529|ref|ZP_02039230.1| hypothetical protein BACCAP_04882 [Bacteroides capillosus ATCC 29799] gi|150269783|gb|EDM97327.1| hypothetical protein BACCAP_04882 [Bacteroides capillosus ATCC 29799] Length = 106 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 34/94 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R G++ EKL E I +++ E G + L + F Sbjct: 5 ALGQRLRQARKDKGLTSEKLSELCSINATYLRQIEAGTKVPSLPVFVSLCRELGTHPDFL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 S E + + +TP +++ Sbjct: 65 LMDSLPGIGIEEYSELSSLLQRATPSQMKVITAM 98 >gi|222053821|ref|YP_002536183.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563110|gb|ACM19082.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 106 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 44/90 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R + ++QEKL E +G+ + V E G + L++IS+ L+ I F Sbjct: 8 LGARIKELRKLRKVTQEKLAEKIGVDPKYVSFIEVGRSSPSLEALENISQALDVEIKDLF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + S S ++ + + T D L++ Sbjct: 68 EFSHHEARPASIDQIDSVLETVTDDQLKIL 97 >gi|21228496|ref|NP_634418.1| MerR family transcriptional regulator [Methanosarcina mazei Go1] gi|20906980|gb|AAM32090.1| transcriptional regulator, MerR family [Methanosarcina mazei Go1] Length = 192 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 8/87 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + VG +IR R M+ E+L E + + +Q+ E G + L Sbjct: 1 MSEENR--------VGSKIRQLREARDMTVEELAEASQSSSELIQQLENGALVPSLTPLL 52 Query: 61 HISEVLESPISFFFDVSPTVCSDISSE 87 I+ L + F D P + Sbjct: 53 KIARALGVRLGTFLDDMPQSGPVLVRS 79 >gi|312967403|ref|ZP_07781618.1| helix-turn-helix family protein [Escherichia coli 2362-75] gi|312287600|gb|EFR15505.1| helix-turn-helix family protein [Escherichia coli 2362-75] Length = 255 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 44/110 (40%), Gaps = 3/110 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI G SQ +L LG++ Q VQ + G +RL +SE+ P S+F Sbjct: 35 NRITKLLQEKGWSQAELARKLGVSAQSVQYWTTGKTFPRGNRLAQLSEISGYPQSWFLGE 94 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + D + L+ F D VR I++VRSI Sbjct: 95 ITSRQFSSKEKHQARTDSV---VFNVLDVEFSCGDGTHVRGDFIDVVRSI 141 >gi|296877340|ref|ZP_06901380.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296431860|gb|EFH17667.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 113 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++Q +L + LGI +E+G L ++++L + + Sbjct: 5 ERLKELRKQAHLTQVELAKQLGIGQSSYADWERGKKNPTQENLIRLAQILNVSVDYLVGN 64 Query: 77 SPTVCSDISSEE 88 S ++ + E Sbjct: 65 SEAKSEELDNIE 76 >gi|254418818|ref|ZP_05032542.1| hypothetical protein BBAL3_1128 [Brevundimonas sp. BAL3] gi|196184995|gb|EDX79971.1| hypothetical protein BBAL3_1128 [Brevundimonas sp. BAL3] Length = 69 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G R++ R G +Q+ L + G++ + + E GV ++ L + + Sbjct: 3 DPRLGSRLKELRTAAGFTQQGLADKAGVSRKTINTVENGVFIPSTIVALDLARALNTTVE 62 Query: 72 FFF 74 F Sbjct: 63 AIF 65 >gi|187933000|ref|YP_001885196.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B] gi|187721153|gb|ACD22374.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B] Length = 179 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 40/90 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR+ RM ++QE+L ++ + + E + + L I E+L + ++ Sbjct: 1 MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 FF + S+++ D L Sbjct: 61 FFSETKEEQVIFSNDDMFKTDDEELKYSLM 90 >gi|166032286|ref|ZP_02235115.1| hypothetical protein DORFOR_01989 [Dorea formicigenerans ATCC 27755] gi|166028009|gb|EDR46766.1| hypothetical protein DORFOR_01989 [Dorea formicigenerans ATCC 27755] Length = 214 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I+ R L +SQE+L E + +T Q + +E + L +S + + Sbjct: 20 MELSIQIKKYRTELHLSQEELAEKVYVTRQTISNWENEKSYPDIHSLLLLSSLFNVSLDQ 79 Query: 73 FFDVSPTVCSDISSEEN 89 +I SE+ Sbjct: 80 LIKGDIEKMKEIISEQE 96 >gi|110679954|ref|YP_682961.1| transcriptional regulator [Roseobacter denitrificans OCh 114] gi|109456070|gb|ABG32275.1| transcriptional regulator HTH-3 family, putative [Roseobacter denitrificans OCh 114] Length = 207 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 2/66 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D +G R+R R + E+ G+ + K E G L+ ++ L Sbjct: 24 PLD--LGVRVRELRKARDWTLEQAATKAGLARSTLSKIENGQMSPTYDALKKLATGLNIS 81 Query: 70 ISFFFD 75 I F Sbjct: 82 IPQLFT 87 >gi|49483261|ref|YP_040485.1| DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425150|ref|ZP_05601576.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427813|ref|ZP_05604211.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430448|ref|ZP_05606830.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433150|ref|ZP_05609508.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436049|ref|ZP_05612096.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|282903647|ref|ZP_06311535.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus C160] gi|282905416|ref|ZP_06313271.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282908388|ref|ZP_06316219.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910675|ref|ZP_06318478.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282913873|ref|ZP_06321660.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M899] gi|282918797|ref|ZP_06326532.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282923919|ref|ZP_06331595.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|283770160|ref|ZP_06343052.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|283957842|ref|ZP_06375293.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus A017934/97] gi|293500910|ref|ZP_06666761.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|293509866|ref|ZP_06668575.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|293526452|ref|ZP_06671137.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M1015] gi|295427586|ref|ZP_06820218.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297591460|ref|ZP_06950098.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|49241390|emb|CAG40074.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257272126|gb|EEV04258.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257274654|gb|EEV06141.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257278576|gb|EEV09195.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281243|gb|EEV11380.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257284331|gb|EEV14451.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|282313891|gb|EFB44283.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|282316607|gb|EFB46981.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282321941|gb|EFB52265.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M899] gi|282325280|gb|EFB55589.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282328053|gb|EFB58335.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330708|gb|EFB60222.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282595265|gb|EFC00229.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus C160] gi|283460307|gb|EFC07397.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|283470309|emb|CAQ49520.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ST398] gi|283789991|gb|EFC28808.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920524|gb|EFD97587.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus M1015] gi|291095915|gb|EFE26176.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467316|gb|EFF09833.1| DNA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|295127944|gb|EFG57578.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576346|gb|EFH95062.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|312438525|gb|ADQ77596.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315193766|gb|EFU24161.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus CGS00] Length = 179 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF S EE + D Sbjct: 61 FFKDSENEKVLYKKEEQVIYD 81 >gi|56807705|ref|ZP_00365580.1| COG1396: Predicted transcriptional regulators [Streptococcus pyogenes M49 591] Length = 150 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G++Q+ L E + + ++ +Q++E +++ + Q +++ + +++ Sbjct: 48 NRIKELRKEKGLTQQDLAEEIYVHYRTIQRWE-NEHKIALDQAQLLADHFDVSVAYLLGY 106 Query: 77 SPTVCSD 83 S T + Sbjct: 107 SDTTKDN 113 >gi|323483673|ref|ZP_08089056.1| hypothetical protein HMPREF9474_00805 [Clostridium symbiosum WAL-14163] gi|323692636|ref|ZP_08106868.1| hypothetical protein HMPREF9475_01731 [Clostridium symbiosum WAL-14673] gi|323403009|gb|EGA95324.1| hypothetical protein HMPREF9474_00805 [Clostridium symbiosum WAL-14163] gi|323503333|gb|EGB19163.1| hypothetical protein HMPREF9475_01731 [Clostridium symbiosum WAL-14673] Length = 238 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +R R + G++ ++L + + + + KYE+G + ++ IS VL I Sbjct: 6 MELGSILRKVRKLRGLTIQQLADKIQKSKSTLSKYERGEISIDILTIKEISRVLNISIDE 65 Query: 73 FFDVSPTVCSD 83 + S Sbjct: 66 LLPGTADNSSQ 76 >gi|323492244|ref|ZP_08097402.1| hypothetical protein VIBR0546_03660 [Vibrio brasiliensis LMG 20546] gi|323313557|gb|EGA66663.1| hypothetical protein VIBR0546_03660 [Vibrio brasiliensis LMG 20546] Length = 507 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G L+ I+EV Sbjct: 13 FLGTKIRNLRKRNHLTMEDLSARCIRVNPEYAPSVSYLSMIERGKRVPSIDMLEVIAEVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + ++F D P Sbjct: 73 QKDPAWFLDDEPEQADITPD 92 >gi|319946827|ref|ZP_08021061.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis ATCC 700641] gi|319746875|gb|EFV99134.1| hypothetical protein HMPREF9421_1242 [Streptococcus australis ATCC 700641] Length = 295 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 32/82 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R +GMSQE L E +G++ Q V K+E G + IS + I Sbjct: 5 ENLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENMISISNLFNISIDELICN 64 Query: 77 SPTVCSDISSEENNVMDFISTP 98 T ++ ++ Sbjct: 65 ERTSLKTSEYLFESITEYDIDK 86 >gi|295101168|emb|CBK98713.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Faecalibacterium prausnitzii L2-6] Length = 210 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 38/79 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G+SQ +L LG+T Q V K+E G + + + I+E+L + F + Sbjct: 7 LKQCRKQKGISQAELASKLGVTQQAVGKWESGKSSPDPATVARIAEILSTTADFLLGLYR 66 Query: 79 TVCSDISSEENNVMDFIST 97 V + + EE ++ + Sbjct: 67 PVSNVTTPEERFFGNYAES 85 >gi|269216324|ref|ZP_06160178.1| DNA-binding protein [Slackia exigua ATCC 700122] gi|269130583|gb|EEZ61661.1| DNA-binding protein [Slackia exigua ATCC 700122] Length = 198 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 28/77 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I+ R +SQ+ L + ++ Q + +E L +S + + Sbjct: 1 MELAGQIKRLRSENDLSQDDLASRIYVSRQTISNWENDKTYPDVQSLLLLSATFDVSVDS 60 Query: 73 FFDVSPTVCSDISSEEN 89 T +I ++ Sbjct: 61 LIKGDVTAMEEIIGNKD 77 >gi|209518698|ref|ZP_03267515.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209500897|gb|EEA00936.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 200 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +P++ +G IR R G++ ++ E GI+ + K E G L Sbjct: 1 MQTADDSKSPLERYLGATIRELRQSHGLTIAQVAEQAGISRGMLSKIENAQTSAGLDVLH 60 Query: 61 HISEVLESPISFFF 74 I+ L +S F Sbjct: 61 RIAMALGVSMSALF 74 >gi|169334840|ref|ZP_02862033.1| hypothetical protein ANASTE_01246 [Anaerofustis stercorihominis DSM 17244] gi|169257578|gb|EDS71544.1| hypothetical protein ANASTE_01246 [Anaerofustis stercorihominis DSM 17244] Length = 132 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 38/85 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G+ I R M+Q++L + L IT + V K+E+G++ S + ++++L+ Sbjct: 1 MDNEMGRLISSLRKEKNMTQQELADKLNITDKAVSKWERGLSYPDISLIPKLADILDIDP 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFI 95 + S S + Sbjct: 61 NKLLGSSNNEISKTDKSNIKDTIML 85 >gi|167767712|ref|ZP_02439765.1| hypothetical protein CLOSS21_02247 [Clostridium sp. SS2/1] gi|240145134|ref|ZP_04743735.1| DNA-binding protein [Roseburia intestinalis L1-82] gi|317497495|ref|ZP_07955815.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710451|gb|EDS21030.1| hypothetical protein CLOSS21_02247 [Clostridium sp. SS2/1] gi|257202808|gb|EEV01093.1| DNA-binding protein [Roseburia intestinalis L1-82] gi|291558919|emb|CBL37719.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] gi|316895281|gb|EFV17443.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 252 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 32/73 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R M+Q+ L + L ++ + V K+E+G + + L I++VL ++ Sbjct: 10 GHFLAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADVLGITVTELLQ 69 Query: 76 VSPTVCSDISSEE 88 + + + Sbjct: 70 GEKLKENKTLNSD 82 >gi|22536402|ref|NP_687253.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|22533229|gb|AAM99125.1|AE014201_23 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] Length = 158 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 53/151 (35%), Gaps = 24/151 (15%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q L + + Q KYE G + + +++ I + + Sbjct: 3 NRLKELRKDKGLTQADLAKVINTNQSQYGKYENGKTSLSIENSKILADFFGVSIPYLLGL 62 Query: 77 SPTVCSDISSEENNV-------------MDFISTPDGLQLNRYFIQIDDVKVRQKIIEL- 122 S+ ++ D+ ST + L+ + + +R ++ E+ Sbjct: 63 DNNSKIANSTIKDTNLLSFFEQVKKDMGQDYFSTLETLEKVSK-KTLFNSPIRDRLEEIK 121 Query: 123 ---------VRSIVSSEKKYRTIEEECMVEQ 144 + + + K R ++ + E+ Sbjct: 122 QEKIKLNQKIDELEAEAKNLRKTLDKEVKER 152 >gi|320546716|ref|ZP_08041027.1| transcriptional regulator [Streptococcus equinus ATCC 9812] gi|320448595|gb|EFW89327.1| transcriptional regulator [Streptococcus equinus ATCC 9812] Length = 228 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 51/112 (45%), Gaps = 2/112 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ LG+ Q +L + LGI+ Q +EKG ++ + L + E+L+ P +F ++ Sbjct: 5 EKLKNRRLELGLKQTELAKQLGISKQSYFAWEKGTSQPTKANLLKLEELLQVPHGYFSEL 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 +++N D L+ + I + ++ + + Sbjct: 65 EIATLYKQLTDQNQEHALTYVRDLLEQQAKVVSIVQEP--RFAYKVYERLSA 114 >gi|313672769|ref|YP_004050880.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939525|gb|ADR18717.1| helix-turn-helix domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 200 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 33/66 (50%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +IN+G+RI+ R + ++ + + G + + + E V + L I++VL + Sbjct: 5 NINIGERIKRLRHMRNLTLQDVANFTGFSKALISQIENNVVTPPITTLAKIAKVLNVKMV 64 Query: 72 FFFDVS 77 +FF+ Sbjct: 65 YFFEDD 70 >gi|331674164|ref|ZP_08374924.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli TA280] gi|331068258|gb|EGI39653.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli TA280] Length = 229 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 3/110 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI G SQ +L LG++ Q VQ + G +RL +SE+ P S+F Sbjct: 9 NRITKLLQEKGWSQAELARKLGVSAQSVQYWTTGKTFPRGNRLAQLSEISGYPQSWFL-- 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + S S + + L+ F D VR I++VRSI Sbjct: 67 -GEITSRQFSSKEKHQTRTDSVVFNVLDVEFSCGDGTHVRGDFIDVVRSI 115 >gi|300312341|ref|YP_003776433.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075126|gb|ADJ64525.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 115 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 12/122 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R+ G+SQ +LG+ L + + E G G L + +++ Sbjct: 5 EIGGRIKEVRLANGLSQRELGQRLDTSTGHISWLEAGKAMPGGELLLQLHREFSVDLNWL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + ++E QL ++ ++ D++ R+ + L S V EKK Sbjct: 65 LTGEEGEPGVMETDEE----------VRQLVDHYCRV-DLQGREILRSLA-SYVGREKKP 112 Query: 134 RT 135 T Sbjct: 113 ST 114 >gi|300690029|ref|YP_003751024.1| transcription regulator protein [Ralstonia solanacearum PSI07] gi|299077089|emb|CBJ49709.1| putative transcription regulator protein [Ralstonia solanacearum PSI07] Length = 113 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 27/71 (38%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+ +G+RI+ R SQE L + + E+G+ L +I L Sbjct: 17 PAPILTALGERIKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICYALN 76 Query: 68 SPISFFFDVSP 78 ++ F Sbjct: 77 VTLAELFGPMD 87 >gi|291529806|emb|CBK95391.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 122 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R ++QE++ + LG++ + KYE L +S+ L I Sbjct: 8 GARLKKYRNEKNITQERIAKILGVSNSMISKYENNTASPSLDSLCTLSKELCVSIDELCG 67 Query: 76 VSPTVCSDISSEENNVMD---FISTPDGLQLNRYFIQIDDVKVR 116 + + + + D + N ++ D + R Sbjct: 68 LQQSGTVSLIGLTDGQADCVRLLIDAFHEYNNTVRKRLSDEQYR 111 >gi|256828945|ref|YP_003157673.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] gi|256578121|gb|ACU89257.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM 4028] Length = 1143 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 34/68 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+RL R + M+QE L E +G+T Q + + E+G L + L + ++ FF Sbjct: 6 VGGRLRLYRQLRDMTQESLSEVIGVTKQHLGQIERGQCNPSLDFLSKAAAALNTQVANFF 65 Query: 75 DVSPTVCS 82 + + Sbjct: 66 LGNSHDPT 73 >gi|187777057|ref|ZP_02993530.1| hypothetical protein CLOSPO_00602 [Clostridium sporogenes ATCC 15579] gi|187773985|gb|EDU37787.1| hypothetical protein CLOSPO_00602 [Clostridium sporogenes ATCC 15579] Length = 181 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 33/61 (54%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++IR R ++ + LGE G++ + + E + + + L+ I++ L PI++F Sbjct: 4 EIAEKIRNLRKEKNLTLKDLGEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYF 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|154498443|ref|ZP_02036821.1| hypothetical protein BACCAP_02432 [Bacteroides capillosus ATCC 29799] gi|150272511|gb|EDM99696.1| hypothetical protein BACCAP_02432 [Bacteroides capillosus ATCC 29799] Length = 210 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 4/129 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +RI R GMSQE+LGE LG++ Q V K+E G + + + E+ + Sbjct: 1 MELNERIAAARRAAGMSQEQLGEALGVSRQAVSKWESGQTKPDLEAVGKMCELFHLSADY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI----DDVKVRQKIIELVRSIVS 128 D SS + + + Q + + R+ + L+ S + Sbjct: 61 LLLGKEEKKDDGSSAQAQPQPQAQSQNQTQYTSGGYSLVLVDTNPTPRETLHMLLNSGMP 120 Query: 129 SEKKYRTIE 137 E+ R IE Sbjct: 121 EEEVDRLIE 129 >gi|86138335|ref|ZP_01056909.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85824860|gb|EAQ45061.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 207 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G ++ P+D +G R+R R + E G+ + K E G L+ + Sbjct: 17 GEEREAEPLD--LGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSPTYEALKKL 74 Query: 63 SEVLESPISFFFD 75 + L+ + F Sbjct: 75 AVGLQISVPQLFT 87 >gi|325261431|ref|ZP_08128169.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324032885|gb|EGB94162.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 95 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 30/78 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+I+ R +Q++L G+ + YE G L +S + + Sbjct: 5 GKKIKQLRKEYNFTQKQLASLAGVAVSAISAYEAGNRYPSYDVLISLSRIFHVSTDYLLG 64 Query: 76 VSPTVCSDISSEENNVMD 93 + D+S + + ++ Sbjct: 65 LEKMEVVDVSGLDEHEVE 82 >gi|291536677|emb|CBL09789.1| transcriptional regulator, XRE family [Roseburia intestinalis M50/1] Length = 68 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 25/64 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G RI+ R G+SQEKL + V E G L+ I L+ Sbjct: 2 ITEKIGSRIKELRKEKGISQEKLAFSADLDRTYVAGVESGKRNPSVKSLEKILVALDVSF 61 Query: 71 SFFF 74 FF Sbjct: 62 EEFF 65 >gi|157324992|ref|YP_001468418.1| gp33 [Listeria phage A500] gi|66733000|gb|AAY52819.1| gp33 [Listeria phage A500] Length = 142 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 43/124 (34%), Gaps = 2/124 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R +QE + + LGI+ E G N + ++ + E + Sbjct: 3 GNRLKQLRKNTNKTQEDISKILGISRGAYSHIENGRNEPDMETIVKLANIFEVSTDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S D + ++ S D ++ Y + +K I + + +K Sbjct: 63 KSNNGLVDTIA--AHIDADASEEDIKEILAYIDEKRKEHTHEKDINITETASEKDKDVDN 120 Query: 136 IEEE 139 EE Sbjct: 121 FVEE 124 >gi|300812901|ref|ZP_07093295.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496127|gb|EFK31255.1| helix-turn-helix protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 122 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 36/84 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK +R R GMSQ++L LG++ Q + +E G ++ I+ + + Sbjct: 5 MIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKTVEKIANIFGVSRNSI 64 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 P + +E+ + ++ Sbjct: 65 LAGLPVEMLEQEGQEDRRVVDLTD 88 >gi|293377825|ref|ZP_06624010.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecium PC4.1] gi|292643535|gb|EFF61660.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecium PC4.1] Length = 123 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 35/82 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R+ M+Q+++ + LGIT YE G S LQ ++ + + + Sbjct: 4 EKIKELRLSKKMTQQEVADKLGITRPAYTAYESGKREPDFSILQSLANIFDVTTDYLLGR 63 Query: 77 SPTVCSDISSEENNVMDFISTP 98 + T ++ + + + Sbjct: 64 NKTPKWADENDLIELDKMLDSN 85 >gi|260430250|ref|ZP_05784224.1| DNA-binding protein [Citreicella sp. SE45] gi|260418722|gb|EEX11978.1| DNA-binding protein [Citreicella sp. SE45] Length = 213 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 30/74 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+++R R M+ L G++ + K E GV + + ++ L P+ Sbjct: 25 LEVAIGRQVRELRKRQRMTGGDLAGKTGLSVGMLSKIENGVISPSLNTMSALANALGVPL 84 Query: 71 SFFFDVSPTVCSDI 84 F + Sbjct: 85 VQLFSGFEEPRGAM 98 >gi|320012637|gb|ADW07487.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 206 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + +D V KRIR R+ G S E+L I + + E G R+ +L Sbjct: 1 MSPVTQNDDELDSLVRKRIRALRVAQGWSLEELAGRAHIGQSTLSRIENGRRRLALDQLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNV 91 ++ L++ + + + + + Sbjct: 61 TLARALDTSLDQLVETASDDVVTSPTIDAAH 91 >gi|229096313|ref|ZP_04227286.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] gi|229102426|ref|ZP_04233134.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|229115267|ref|ZP_04244677.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228668407|gb|EEL23839.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228681073|gb|EEL35242.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|228687273|gb|EEL41178.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] Length = 181 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 37/96 (38%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKQLANMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEETNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|229156920|ref|ZP_04285001.1| hypothetical protein bcere0010_31040 [Bacillus cereus ATCC 4342] gi|228626410|gb|EEK83156.1| hypothetical protein bcere0010_31040 [Bacillus cereus ATCC 4342] Length = 374 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELATYIGITKASVSKWETGQSYPDITFLPLLASYFNVSIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ--------LNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + + + + + ++ ++ + Sbjct: 64 LISYTPQMEQEDIKDLYHRLAEDFSEKPFDEVMIECRGIIKKYYSCFPLLLQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K + EE M Sbjct: 124 HMLTEDTDKRIEMLEEAM 141 >gi|226355114|ref|YP_002784854.1| XRE family transcriptional regulator [Deinococcus deserti VCD115] gi|226317104|gb|ACO45100.1| putative Transcriptional regulator, XRE family [Deinococcus deserti VCD115] Length = 80 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 7/77 (9%) Query: 6 KIPNPVD-------INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 + P P D I VG+RIR R+ GM+Q++ GI K E S Sbjct: 4 RKPQPTDPLVQEVRIRVGQRIRELRLAKGMNQDEFAAAAGIHRTHPGKLENAQIDPQLST 63 Query: 59 LQHISEVLESPISFFFD 75 L ++ L + Sbjct: 64 LVKVASALGVRVDELLT 80 >gi|212704889|ref|ZP_03313017.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC 29098] gi|212671660|gb|EEB32143.1| hypothetical protein DESPIG_02956 [Desulfovibrio piger ATCC 29098] Length = 183 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+ I RR +GM+QE+L +G++ Q V K+E G + RL + +VL++ + Sbjct: 10 IRLGQEILRRRKAMGMTQEELASRMGVSRQSVAKWETGQSSPDIDRLSLLRDVLQTSLDE 69 Query: 73 F 73 Sbjct: 70 L 70 >gi|170754718|ref|YP_001779994.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119930|gb|ACA43766.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 181 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++IR R ++ + L E G++ + + E + + + L+ I++ L PI++F Sbjct: 4 EIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYF 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|153931215|ref|YP_001382744.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935772|ref|YP_001386295.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|168177684|ref|ZP_02612348.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|170758347|ref|YP_001785679.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|226947573|ref|YP_002802664.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|152927259|gb|ABS32759.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931686|gb|ABS37185.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|169405336|gb|ACA53747.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|182671289|gb|EDT83263.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226844325|gb|ACO86991.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 181 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 32/61 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++IR R ++ + L E G++ + + E + + + L+ I++ L PI++F Sbjct: 4 EIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIADALNVPITYF 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|70734303|ref|YP_257943.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68348602|gb|AAY96208.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 209 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 8/87 (9%) Query: 1 MVGNKKIP------NP-VDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 M ++ P +P +D VG R+R R ++ ++L E G+ + K E Sbjct: 1 MSSDRAQPASSSHAHPLIDRTQVGARLRTIRKNQKLTLKQLSERSGVALSTLSKMELAQV 60 Query: 53 RVGASRLQHISEVLESPISFFFDVSPT 79 V +L + L I+ F +P Sbjct: 61 SVSYEKLAAAARALGVDIARLFTPAPN 87 >gi|332827339|gb|EGK00099.1| hypothetical protein HMPREF9455_03565 [Dysgonomonas gadei ATCC BAA-286] Length = 131 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 52/129 (40%), Gaps = 11/129 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R ILG+ QE+L E +G++ Q V ++E ++ L I+ L + + Sbjct: 13 GYNAKRLREILGVKQEELAERIGVSQQTVSRFES-TPQLDDETLDKIAAALNISVDAIKN 71 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S + + + +T K+IEL ++ +E++ Sbjct: 72 FSEDAAINFVANTFHDSTVANTYHQC----------SFNPLDKVIELYERMLKTEQEKVQ 121 Query: 136 IEEECMVEQ 144 + +E + ++ Sbjct: 122 LLQEVLKDK 130 >gi|323126871|gb|ADX24168.1| putative transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 227 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 26/127 (20%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++L+R G SQ + E +G++ Q K+EKG+++ L + + + P +F + Sbjct: 5 EKLKLKRTEHGFSQLSIAERIGVSKQAYSKWEKGISQPTNENLIKLENLFKVPAGYFNEE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 ++ + Q++ + I VRS+VSS+ K + Sbjct: 65 -------------------------EILNLYHQLNSPNQSKAIT-YVRSLVSSQNKVSHL 98 Query: 137 EEECMVE 143 +E + E Sbjct: 99 IQETLYE 105 >gi|300694645|ref|YP_003750618.1| transcriptional regulator, xre family [Ralstonia solanacearum PSI07] gi|299076682|emb|CBJ36021.1| putative transcriptional regulator, XRE family [Ralstonia solanacearum PSI07] Length = 216 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 7/134 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG RIR R LG++ L E G+ + K E+G + + ++ L Sbjct: 24 KEVGARIREARKALGLTLSALSERSGVALSTISKAERGDIALTYEKFAGLAHALGLEFEQ 83 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL-----VRSIV 127 S D N + + D ++++ + RS+ Sbjct: 84 LLGRRRDPASGPLRPSFTPSGGQVIYDTP--NYEYGMLADELTGKRMVPMRAHIRARSLA 141 Query: 128 SSEKKYRTIEEECM 141 R EE + Sbjct: 142 DFPDYIRHPGEEFV 155 >gi|326793247|ref|YP_004311068.1| hypothetical protein Clole_4198 [Clostridium lentocellum DSM 5427] gi|326544011|gb|ADZ85870.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 143 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G +QE++ L + Q + K+EKG++ A L I+ + + +S Sbjct: 4 ENLKALRKTKGFTQEEIAIRLNVVRQTISKWEKGLSIPDADILIKIAALFDVSVSELLGS 63 Query: 77 SPTVCSDI 84 DI Sbjct: 64 KLEDEKDI 71 >gi|260887021|ref|ZP_05898284.1| immunity repressor protein [Selenomonas sputigena ATCC 35185] gi|330839199|ref|YP_004413779.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|260863083|gb|EEX77583.1| immunity repressor protein [Selenomonas sputigena ATCC 35185] gi|329746963|gb|AEC00320.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 135 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 2/93 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I+ R G++Q +L + ++ + EK S L+ I++ + +S Sbjct: 1 MSIGEKIKEARKAAGLTQMELAKKTRLSRSYIGDIEKDRYNPSLSTLELIAKATGTSLSA 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 V S + + S D L + Sbjct: 61 L--VRNEEQSTTPPDHYDTTSPHSKRDLNDLAK 91 >gi|257790696|ref|YP_003181302.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257474593|gb|ACV54913.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 141 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 8/131 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R + G++Q +L E +T ++ YE G G +++ I+ L D Sbjct: 4 GELIRKYRKMRGLTQSELAEKCSLTDSAIRNYELGNRTPGEDQVKGIASALHVAPESLSD 63 Query: 76 VSPTVCSDISS---EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS-IVS--S 129 V + + F G +L K K+ + +++ + S Sbjct: 64 VPVATAREALELIFRIDEEFGFKPKEIGGELVLAID--PSSKKAPKLAQALKAWLAQIDS 121 Query: 130 EKKYRTIEEEC 140 EK E+ Sbjct: 122 EKSGEITAEQL 132 >gi|238924521|ref|YP_002938037.1| hypothetical protein EUBREC_2163 [Eubacterium rectale ATCC 33656] gi|238876196|gb|ACR75903.1| Hypothetical protein EUBREC_2163 [Eubacterium rectale ATCC 33656] gi|291525206|emb|CBK90793.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291529334|emb|CBK94920.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 179 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 5/104 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R++ R+ G++Q++L + +T + + E+ N L I + L + Sbjct: 1 MDIGHRMKELRIQYGLTQQELADRAELTKGFISQLERNQNSPSVGTLLDIIQCLGMTPAE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 FF S + + ++ I + + R Sbjct: 61 FFTDSEPEQIVYKANDYFEKIDEEKNSKVE-----WIIPNAQTR 99 >gi|237739911|ref|ZP_04570392.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229423519|gb|EEO38566.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 184 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 38/85 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R GMS +L + ++ + + E+G L+ I+ L+ +++ Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVDLSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + +I + + +I + Sbjct: 61 LIEDEEDDIRNIEYVKAANVRYIES 85 >gi|209559928|ref|YP_002286400.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes NZ131] gi|209541129|gb|ACI61705.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes NZ131] Length = 195 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 36/92 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R +SQE+L E + ++ Q + +E + L +S++ + ++ Sbjct: 1 MEIGQQIIRYRKQQALSQEELAEKVYVSRQSISHWENDKTYPVLASLLLLSQIFQVSLNQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + T + L Sbjct: 61 LIKGDIEKMKYTITQVDKKNFERDTKVMVTLM 92 >gi|254388135|ref|ZP_05003371.1| hypothetical protein SSCG_00698 [Streptomyces clavuligerus ATCC 27064] gi|294817387|ref|ZP_06776029.1| Putative Xre family DNA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197701858|gb|EDY47670.1| hypothetical protein SSCG_00698 [Streptomyces clavuligerus ATCC 27064] gi|294322202|gb|EFG04337.1| Putative Xre family DNA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 349 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 48/126 (38%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 ++ P P I G ++R R+I MSQ L L I V ++E G+ RL I+ Sbjct: 14 SRSNPMPDRIFDGNKLRDYRVIRRMSQSDLAAALDIRTNAVYRWENGLATPPQERLPGIA 73 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +L + + F + + +T ++ I+ + R E V Sbjct: 74 AMLGADLDELFPRPAPPNLADLRCDAGMRQSDTTRYTNSMSPMPIRAAEQGRRALSDEAV 133 Query: 124 RSIVSS 129 ++ + Sbjct: 134 TALARA 139 >gi|193214005|ref|YP_001995204.1| XRE family transcriptional regulator [Chloroherpeton thalassium ATCC 35110] gi|193087482|gb|ACF12757.1| transcriptional regulator, XRE family [Chloroherpeton thalassium ATCC 35110] Length = 270 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 43/124 (34%), Gaps = 1/124 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R + R L ++Q+ + +GI+ + + E G G+ + + ++ Sbjct: 4 MIGDRFKAVRKALMLNQDAFSKDIGISQSSLSEIENGKFSPGSDIILSLCRYFNIDSNWL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQ-LNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + E N+ + P + R + L + + +K+ Sbjct: 64 LTGTGKMFLEKKPESENISEAGDEPSAADWQLQAEQAAKTAASRSESEALAGDVAALKKQ 123 Query: 133 YRTI 136 + Sbjct: 124 VNEL 127 >gi|195939798|ref|ZP_03085180.1| putative repressor protein [Escherichia coli O157:H7 str. EC4024] gi|261226405|ref|ZP_05940686.1| putative repressor protein [Escherichia coli O157:H7 str. FRIK2000] gi|261257983|ref|ZP_05950516.1| putative repressor protein [Escherichia coli O157:H7 str. FRIK966] Length = 214 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 35/75 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R G++Q +LG+ G+T + +EK +N G+ L +++ L + S+ Sbjct: 4 LGFRLKRLRKDKGLTQVELGKLSGVTGVTIGYWEKDLNEPGSKALSKLAQALGTTESYLL 63 Query: 75 DVSPTVCSDISSEEN 89 + + Sbjct: 64 YGVSSPELSFVQSTS 78 >gi|168204997|ref|ZP_02631002.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170663385|gb|EDT16068.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] Length = 180 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R ++Q+ L E GI+ + E ++ ++ L+ + Sbjct: 1 MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALATALKLDLKS 60 Query: 73 FFDV 76 FFD Sbjct: 61 FFDD 64 >gi|99081186|ref|YP_613340.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99037466|gb|ABF64078.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 209 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G++ P +D +G R+R R + E G+ + K E G L+ + Sbjct: 17 GDQSAPEALD--LGARVRELRKQRDWTLEHAASQAGLARSTLSKIENGQMSPTYDALKKL 74 Query: 63 SEVLESPISFFFD 75 + L+ + F Sbjct: 75 AVGLQISVPQLFT 87 >gi|323126423|gb|ADX23720.1| DNA-binding protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 110 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 41/105 (39%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + + KRIR R+ GM+QE+L E + K E + + L+ + L+ Sbjct: 4 NNLQSFIAKRIRKIRLQRGMTQEQLEEKADLGVNYAYKLENLATNIKINTLEKVLNALDI 63 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 I+ FFD S + ++ ++ + I D Sbjct: 64 TITDFFDTPNFSSSSEIDNLIEQLKLLTPSKRNKVLKIINVIIDE 108 >gi|320322230|gb|EFW78326.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331879|gb|EFW87817.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 199 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 16 IALDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSM 75 Query: 71 SFFFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FF P + + + + ++D ++L Sbjct: 76 VEFFSEETVPENAAQVVYKASELIDISDGAVTMKLV 111 >gi|309701005|emb|CBJ00303.1| putative prophage repressor [Escherichia coli ETEC H10407] Length = 211 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +++ L+ + Sbjct: 2 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLLK 61 Query: 76 VSPTVCS 82 ++ + Sbjct: 62 GEDSLSN 68 >gi|289664753|ref|ZP_06486334.1| putative DNA binding protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289669222|ref|ZP_06490297.1| putative DNA binding protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 66 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G SQ +LGE LG++ Q + E G I+ + I F Sbjct: 3 SRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 >gi|257876195|ref|ZP_05655848.1| predicted protein [Enterococcus casseliflavus EC20] gi|257810361|gb|EEV39181.1| predicted protein [Enterococcus casseliflavus EC20] Length = 284 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 42/110 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++I +R ++Q L + L +++Q V +E+G + +L ++ +L+ I Sbjct: 7 RKIGQQIAAKRKEKNLTQSNLADQLLVSYQAVSNWERGNSLPDIEKLPQLAAILDLSIDE 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + ++ I + ++ ++L Sbjct: 67 LLGKPAAAVQHYQAGTAQPEEIAELAPLIKPQELSALIQEEPFQETSLDL 116 >gi|238063802|ref|ZP_04608511.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237885613|gb|EEP74441.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 214 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 3/81 (3%) Query: 5 KKIPNPVDIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +++ + +D VG R+R R + +L GI+ + + E G R +L Sbjct: 20 RRMTDDLDRALADVGPRLRALRRQRETTLAELSAATGISVSTLSRLESGTRRPTLEQLLP 79 Query: 62 ISEVLESPISFFFDVSPTVCS 82 ++ + PT Sbjct: 80 LARAHGVTLDDLVGAPPTGDP 100 >gi|183598410|ref|ZP_02959903.1| hypothetical protein PROSTU_01806 [Providencia stuartii ATCC 25827] gi|188020589|gb|EDU58629.1| hypothetical protein PROSTU_01806 [Providencia stuartii ATCC 25827] Length = 104 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 3/98 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + P + VG I R G+S +L + L + Q V + E+GV R+ +++ Sbjct: 1 MQSNLSPKEI---VGSNIHKARRAKGLSGSELADLLLCSQQHVSRIERGVIRLHLEQIKQ 57 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 I+ L+ I+ D + I+ N F + Sbjct: 58 IANSLDIDINCLLDGVGFQNNSINYIHNMECYFKAEGW 95 >gi|158424413|ref|YP_001525705.1| XRE family-like protein [Azorhizobium caulinodans ORS 571] gi|158331302|dbj|BAF88787.1| helix-turn-helix XRE-family like protein [Azorhizobium caulinodans ORS 571] Length = 216 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R GM+ ++L +T + E+G+ + L ++ L I+ F Sbjct: 28 LGPNLRQLRQERGMTLDRLAAESALTRGYLSLVERGLKTPSITALLRVATALGVNIAQLF 87 Query: 75 DVSPTVCS 82 D++ + Sbjct: 88 DLNAAPTA 95 >gi|330831530|ref|YP_004394482.1| putative transcriptional regulator [Aeromonas veronii B565] gi|328806666|gb|AEB51865.1| Putative transcriptional regulator [Aeromonas veronii B565] Length = 180 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 42/92 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R++ R +SQ +L + G+T + + EK + L+ + E + ++ Sbjct: 1 MDIGHRLKAVRTKAALSQRELAKRSGVTNGFISQIEKNQVSPSVASLRKVLEGIPMSLAS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + +++ ++ D + P +L Sbjct: 61 FFTEETEMGTEVIFRAADMPDLGTHPISYRLV 92 >gi|325686748|gb|EGD28774.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 168 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLNDKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 73 FFDVSPTVCS 82 Sbjct: 61 LLLEDSDKPE 70 >gi|323693921|ref|ZP_08108108.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323502018|gb|EGB17893.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 192 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 8/83 (9%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N K G I R G +Q +L E L ++ + V K+E G+ S L Sbjct: 1 MDNDKS--------GALISSLRKEKGYTQRQLAEALHVSDKAVSKWECGLGCPDVSLLGA 52 Query: 62 ISEVLESPISFFFDVSPTVCSDI 84 +S VL I + S+ Sbjct: 53 LSSVLGVNIEKILEGELEPNSED 75 >gi|323486288|ref|ZP_08091614.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323400398|gb|EGA92770.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14163] Length = 192 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 8/83 (9%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N K G I R G +Q +L E L ++ + V K+E G+ S L Sbjct: 1 MDNDKS--------GALISSLRKEKGYTQRQLAEALHVSDKAVSKWECGLGCPDVSLLGA 52 Query: 62 ISEVLESPISFFFDVSPTVCSDI 84 +S VL I + S+ Sbjct: 53 LSSVLGVNIEKILEGELEPNSED 75 >gi|323350704|ref|ZP_08086365.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322123124|gb|EFX94815.1| XRE family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 169 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 31/81 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 2 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 61 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + D Sbjct: 62 LLLEDSNKPEIKPVLSEDEKD 82 >gi|315651060|ref|ZP_07904094.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315486650|gb|EFU76998.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 166 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 2/105 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I+ R G++Q+++ + LGI+ Q +YE+ LQ+I++ L+ + Sbjct: 6 GENIKRIRKSKGLTQKEVAKKLGISQQSFAQYERIDAIPKFKTLQNIADALDVSVGDIIY 65 Query: 76 VSPTVCSDISSEENN--VMDFISTPDGLQLNRYFIQIDDVKVRQK 118 P S E G + F+ I D + K Sbjct: 66 DGPKDKSRYLIEFTKYLYDHGFKYEYGDESLAAFMGIGDYAEKNK 110 >gi|312134484|ref|YP_004001822.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774535|gb|ADQ04022.1| helix-turn-helix domain protein [Caldicellulosiruptor owensensis OL] Length = 143 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 16/129 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G +IR+ R +SQ++L + L I+ Q + YEKG G + L +SE L+ I F Sbjct: 16 EFGLKIRILREEKRISQKELAKRLEISPQALANYEKGKRMPGINILVRLSEELDVSIDFL 75 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 ++ I P + + +++++ +++I+ L+ + + E + Sbjct: 76 LGLTD----------------IRKPKSRMVKEHLEMLENIQEKEEILSLIEELSNWEPEA 119 Query: 134 RTIEEECMV 142 I E + Sbjct: 120 VKIIERFLK 128 >gi|284989132|ref|YP_003407686.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062377|gb|ADB73315.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 90 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V RI L R G+++ +L + LG+ +Q V E+G I+E P+ Sbjct: 9 AVYNRIALLRAEQGVTRRELADALGVHYQTVGYLERGEYNPSLHLALRIAEFFGLPVEVV 68 Query: 74 FDVSP 78 F P Sbjct: 69 FSTRP 73 >gi|269216039|ref|ZP_06159893.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] gi|269130298|gb|EEZ61376.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] Length = 139 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 4/115 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I + R GMSQE+L E LG++ Q V K+E + + ++++ + Sbjct: 1 MILADKIIMLRKKAGMSQEQLAERLGVSRQSVSKWEGSQSMPDMDKAVKLADLFGLSLDS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 V + + + S D ++ F + + R+ LVR + Sbjct: 61 LIRDDLDVEDGVEAPSVSTDAATSDADDAPISVSFDEAMHLSTRR----LVRRLA 111 >gi|254831247|ref|ZP_05235902.1| hypothetical protein Lmon1_07812 [Listeria monocytogenes 10403S] Length = 158 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 42/123 (34%), Gaps = 2/123 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+ R G SQ KL + LG + QV YE+G L I+E + Sbjct: 4 KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYLLGR 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 +D + + + D ++ Y + ++ I + ++ Sbjct: 64 DDNNLADTIAAHIDSN--ATEEDIKEILAYIEEKRKEHANEREINITEIASKEDEAVDKF 121 Query: 137 EEE 139 EE Sbjct: 122 VEE 124 >gi|39995190|ref|NP_951141.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39981952|gb|AAR33414.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|298504194|gb|ADI82917.1| helix-turn-helix transcriptional regulator with cupin domain [Geobacter sulfurreducens KN400] Length = 196 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 33/80 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R ++ ++L E G++ + + E + L IS+ L+ I + Sbjct: 11 LRLGAKIRKLRQDRRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKISKGLKVGIHY 70 Query: 73 FFDVSPTVCSDISSEENNVM 92 FF+ + + Sbjct: 71 FFEEEEDQQKVVLTRAAQQQ 90 >gi|331701810|ref|YP_004398769.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129153|gb|AEB73706.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 125 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 26/90 (28%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I R G+SQ +L + L I + +E + L ++ + + Sbjct: 1 MTLGQTISSLRERRGLSQVQLAKKLNIGTSTLGMWETDKRKPNPDALVSLANYFDVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + + Sbjct: 61 LLGNTASEKGSAPEWATEQDRKDLRKFLED 90 >gi|325697266|gb|EGD39152.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK160] Length = 167 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQEKL E + ++ Q + K+E G ++ +S++ + + Sbjct: 1 MKLADKLFELRKEKGWSQEKLAEQINVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 60 Query: 73 -FFDVSPTVCSDISSEENNVMDF 94 + S + E+ + Sbjct: 61 LLLEESDKPEINPVLSEDEKNRY 83 >gi|258611915|ref|ZP_05243102.2| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|290892307|ref|ZP_06555302.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|293596363|ref|ZP_05230968.2| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|293597004|ref|ZP_05266446.2| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|300764870|ref|ZP_07074859.1| prophage repressor protein [Listeria monocytogenes FSL N1-017] gi|258607134|gb|EEW19742.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|290558133|gb|EFD91652.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|293584645|gb|EFF96677.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293595206|gb|EFG02967.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300514357|gb|EFK41415.1| prophage repressor protein [Listeria monocytogenes FSL N1-017] Length = 117 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 1/107 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG +I+ R G++QE L E L T Q + +YE G + L ++++ + Sbjct: 9 LNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDRKANQDVLFELAKIFNKRL 68 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 FF + + + +D T + ++ +I++ R Sbjct: 69 DDFFPERNLPPVDERLVTIAAHIDDDVTEEEMRDILAYIEMKKKLHR 115 >gi|228911365|ref|ZP_04075168.1| Prophage repressor [Bacillus thuringiensis IBL 200] gi|228848302|gb|EEM93153.1| Prophage repressor [Bacillus thuringiensis IBL 200] Length = 138 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 22/59 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+R+ R G++Q + L + +E S L ISE L + Sbjct: 34 VGERLIHFRKKRGLTQYDIAGYLNVARPTYTNWEANRAEPDLSTLIKISEYLGISLDTL 92 >gi|283796605|ref|ZP_06345758.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1] gi|291076025|gb|EFE13389.1| transcriptional regulator, Cro/CI family [Clostridium sp. M62/1] Length = 177 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 35/68 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R++ G++QE+L + ++ + + E+ + + L I + L + I Sbjct: 1 MSIGAKLKELRVLKGLTQEELADRAELSKGFISQVERDLTSPSIATLMDILQCLGTTIGE 60 Query: 73 FFDVSPTV 80 FF + Sbjct: 61 FFAETADE 68 >gi|188587862|ref|YP_001920327.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] gi|188498143|gb|ACD51279.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] Length = 179 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 40/90 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR+ RM ++QE+L ++ + + E + + L I E+L + ++ Sbjct: 1 MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 FF + S+++ D L Sbjct: 61 FFSETKEEQVIFSNDDMFKTDDEELKYSLM 90 >gi|162148230|ref|YP_001602691.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161786807|emb|CAP56390.1| putative transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] Length = 475 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 2/116 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R +SQ+ L LGI+ + E V AS L ++ L+ I Sbjct: 6 IGYIIRRLRSERSLSQQGLATRLGISPSYLNLIEHDQRSVTASLLIKLTRALDVSIEALS 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 V + E + D + + + + + ++ L ++ ++ Sbjct: 66 GVDEQRLRGLLHEALS--DPLLGAHAVPAQEIAVLAAQPEAARAVLTLHQAFRAAH 119 >gi|157159743|ref|YP_001457061.1| P22 repressor protein c2 [Escherichia coli HS] gi|253774261|ref|YP_003037092.1| XRE family transcriptional regulator [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260856262|ref|YP_003230153.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|291283947|ref|YP_003500765.1| P22 repressor protein c2 [Escherichia coli O55:H7 str. CB9615] gi|157065423|gb|ABV04678.1| P22 repressor protein c2 [Escherichia coli HS] gi|194021560|gb|ACF32369.1| repressor protein C2 [Enterobacteria phage DE3] gi|253325305|gb|ACT29907.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253976933|gb|ACT42603.1| Repressor protein C2 [Escherichia coli BL21(DE3)] gi|257754911|dbj|BAI26413.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|290763820|gb|ADD57781.1| P22 repressor protein c2 [Escherichia coli O55:H7 str. CB9615] gi|313848585|emb|CBY77813.1| P22 repressor protein c2 [Escherichia coli BL21(DE3)] gi|324114861|gb|EGC08828.1| peptidase S24 [Escherichia fergusonii B253] Length = 216 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +++ L+ + Sbjct: 7 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLLK 66 Query: 76 VSPTVCS 82 ++ + Sbjct: 67 GEDSLSN 73 >gi|139437169|ref|ZP_01771329.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC 25986] gi|133776816|gb|EBA40636.1| Hypothetical protein COLAER_00308 [Collinsella aerofaciens ATCC 25986] Length = 208 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 43/106 (40%), Gaps = 7/106 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ G++Q +L + LGIT + V +E G ++ +++ ++ + ++ ++ Sbjct: 8 RLKRIRLDSGLTQAELADKLGITNRAVGAWESGRSKPRLDKMKELAVLFDTTVADLMGED 67 Query: 78 PTVCSDISSEE-------NNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + + ++ DF + I D R Sbjct: 68 AAEAAISGTSRMVPLLGFAHMGDFEDEGNLADEVEVPASIADAHPR 113 >gi|89097987|ref|ZP_01170873.1| hypothetical protein B14911_20703 [Bacillus sp. NRRL B-14911] gi|89087150|gb|EAR66265.1| hypothetical protein B14911_20703 [Bacillus sp. NRRL B-14911] Length = 187 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K+ N + N+G+ +R R G+S + E G++ + + E+G + + L I+ Sbjct: 2 EEKMEN-IHKNIGENLRNIRRSRGLSLDMAAEATGVSKAMLGQIERGESNPTVTTLWKIA 60 Query: 64 EVLESPISFFFDVSPTVCS 82 L+ S + S Sbjct: 61 SGLQISFSSLMAEKSSEVS 79 >gi|126438464|ref|YP_001060149.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126217957|gb|ABN81463.1| DNA-binding protein [Burkholderia pseudomallei 668] Length = 195 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 4/90 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L + Sbjct: 3 INQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSL 62 Query: 71 SFFFDVS----PTVCSDISSEENNVMDFIS 96 + F+ ++E+ D S Sbjct: 63 ASLFEDDRAARAASPLSRATEQPVWKDPAS 92 >gi|330683978|gb|EGG95740.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU121] Length = 179 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 35/89 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MEIGYKLKNLRKIKNLTQEELAERTDLSKGYISQIESQNASPSMETFLNILEVLGTSASD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 FF + EE + D L Sbjct: 61 FFKETEQQKVIYKKEEQIIYDEYDRGYIL 89 >gi|320108135|ref|YP_004183725.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319926656|gb|ADV83731.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 178 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 46/122 (37%), Gaps = 7/122 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V +R R++ +SQ +L +G+ + K E G L+ ++ L+ IS Sbjct: 64 LQVASAVRDLRLVRNLSQRQLAGRMGVPRTYISKIENGKAMPTIGSLERLARALQVDISD 123 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + P ++ ++ Q+ D R + VR + + ++ Sbjct: 124 LLRDAKSRHQG------ETAVLTADPFLAEIAQFVGQL-DPVQRSIFLNQVRELAAGRRR 176 Query: 133 YR 134 Sbjct: 177 MA 178 >gi|313898840|ref|ZP_07832374.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956422|gb|EFR38056.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 150 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G + R G+SQE++ E +G++ Q + K+E + + ++++ + Sbjct: 1 MNLGNSLFHARKKSGLSQEEVAEKIGVSRQTISKWETNETVPDIYQSKKMAKLYRISLDE 60 Query: 73 FFDVSPTVCS 82 + + Sbjct: 61 LIEFDIDLQE 70 >gi|310825707|ref|YP_003958064.1| transcriptional repressor [Eubacterium limosum KIST612] gi|308737441|gb|ADO35101.1| transcriptional repressor [Eubacterium limosum KIST612] Length = 116 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 48/113 (42%), Gaps = 9/113 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIRL I M Q L + GI+ + +Y G + + +++ L ++ Sbjct: 5 IGQRIRLALEINHMRQSDLSKKTGISPSAINQYISGNFEPKQNNIYLLAKALNVNEAWLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVR 124 D+S E ++ + T + L + F ++ + + +++ EL Sbjct: 65 ------GYDVSIERSDNSAPLITEQEVALLKLFRKLSETGQDEALKRVEELSE 111 >gi|296330703|ref|ZP_06873180.1| Phage PBSX transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673960|ref|YP_003865632.1| Phage PBSZ transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152167|gb|EFG93039.1| Phage PBSX transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412204|gb|ADM37323.1| Phage PBSZ transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 113 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 12/121 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R +QE++ +G++ + YE G + LQ +++ + + Sbjct: 1 MIGSRLKSLRGKR--TQEEIASHIGVSRARYSHYENGRSEPDYDTLQKLADYFQVTTDYL 58 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D + + LQ+ +Q + +Q+ IE + + EK Sbjct: 59 LTGKDKKSD----------DDMFSDPDLQVAYRDMQDFSPESKQQAIEFINYLKEKEKNR 108 Query: 134 R 134 + Sbjct: 109 K 109 >gi|261866843|ref|YP_003254765.1| XRE family transcriptional regulator [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412175|gb|ACX81546.1| transcriptional regulator, XRE family [Aggregatibacter actinomycetemcomitans D11S-1] Length = 70 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GK+++ R G+SQE L + + E+G + + I+ L I FF Sbjct: 11 GKKVKELRKQKGLSQEALALLCDLDRSYIGGVERGERNISLINIYKITLALNIDIKDFF 69 >gi|253578635|ref|ZP_04855906.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849578|gb|EES77537.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 220 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G RI+ RR+ L ++Q + E +G+T + +YE G + +SE L + + Sbjct: 39 IGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 98 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ + + QL + +D + ++ +++ Sbjct: 99 KGETDEYETDITDKRELQIRDAMGDILEQLPLALTKEEDAFSKDLLLLMLKQ 150 >gi|237718064|ref|ZP_04548545.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|293370031|ref|ZP_06616598.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|299147755|ref|ZP_07040818.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] gi|229452705|gb|EEO58496.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|292634949|gb|EFF53471.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|298513938|gb|EFI37824.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 3_1_23] Length = 134 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 7/138 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K N + ++G++I R + GM+Q +LG+ LGIT Q V K E+ + RL Sbjct: 1 METEKYTNTI--HLGRKIERVRRLRGMTQAELGDLLGITKQAVSKIEQ-TEKFDDERLGE 57 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L + + ++ S N+ F +++IE Sbjct: 58 IASALGVTVDGLKSFNEETILYNTNNFYENCGVKSAVSNTGNNQTFNSFP----VEQVIE 113 Query: 122 LVRSIVSSEKKYRTIEEE 139 + ++ +K+ ++ Sbjct: 114 IFEKLLDKQKEQFETLKK 131 >gi|209808836|ref|YP_002274407.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257883427|ref|ZP_05663080.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257892129|ref|ZP_05671782.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257895015|ref|ZP_05674668.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|209528673|dbj|BAG74974.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257819085|gb|EEV46413.1| transcriptional regulator [Enterococcus faecium 1,231,502] gi|257828489|gb|EEV55115.1| transcriptional regulator [Enterococcus faecium 1,231,410] gi|257831394|gb|EEV58001.1| transcriptional regulator [Enterococcus faecium 1,231,408] Length = 298 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 52/132 (39%), Gaps = 13/132 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECL--GITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+RIR R ++ E+ G+ + +E G N + R++ I+E+ Sbjct: 165 KMIGQRIRKIRKKENITLEEFGKLFSPTADKAVISNWENGKNLPNSERIKKIAEIGGVSE 224 Query: 71 SFFFDVSPTVCSD----ISSEENNVMDFISTPDGLQLNRYF-------IQIDDVKVRQKI 119 + + ++ +S + ++ +S + ++ F +IDD R+ Sbjct: 225 LYLMTGVDSSVAESMYFLSEVALDALERLSIEEVNRIIESFAGYLNVISKIDDPDKREIS 284 Query: 120 IELVRSIVSSEK 131 + + + +K Sbjct: 285 LNAICQLSLLDK 296 Score = 40.2 bits (92), Expect = 0.092, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 48/129 (37%), Gaps = 14/129 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G RI+ R G + LG+ + + +EKG N RL+ I+ + + + + Sbjct: 9 GNRIKQIREKHGYTMADLGKLVDANSPSTINNWEKGNNLPNRKRLEKIALLGGTSVEWI- 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE---LVRSIVSSEK 131 + ++ + ++ ++ + + + R+ +++ + + + Sbjct: 68 ---------KYGDFSDYVYRLTQNIEEKILKEYGETTLNNYREALLDELTIEKITYEEDT 118 Query: 132 KYRTIEEEC 140 K E+ Sbjct: 119 KILAAAEKI 127 >gi|195978222|ref|YP_002123466.1| hypothetical protein Sez_1101 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974927|gb|ACG62453.1| hypothetical protein Sez_1101 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 69 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 23/66 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G++QE+L L ++ Q + E G + I+ + I F Sbjct: 3 NRLEEIRKQKGITQEELANALEVSRQTIGSLENGRYNPSITLAFKIARFFDLTIEQIFSD 62 Query: 77 SPTVCS 82 Sbjct: 63 EEDQNE 68 >gi|170016442|ref|YP_001727361.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803299|gb|ACA81917.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 122 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 47/116 (40%), Gaps = 1/116 (0%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R ++Q+ L + + + + KYE G + + I++VL++ + + + Sbjct: 7 RIKELRKQKQLTQQGLADKIEASRDTITKYENGRRIPKLAMISLIADVLDTTVDYLQGKT 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + NN + T Q+ + + ++I +LV I K+ Sbjct: 67 DNALKTSHNGSNNGDEQPLTDAQKQVAYFIDPSATQEDIEQIKKLVE-IAKLSKRR 121 >gi|312136006|ref|YP_004003344.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311776057|gb|ADQ05544.1| helix-turn-helix domain protein [Caldicellulosiruptor owensensis OL] Length = 177 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 38/82 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R+ R G + +++ E LGIT KYE+ +L I+++ + F Sbjct: 3 GERLRMLRNEKGFTMQQMAEMLGITIGSWAKYERNEAEPSFDKLVKIADIFNVSVDFLLG 62 Query: 76 VSPTVCSDISSEENNVMDFIST 97 + + + E N+ ++I Sbjct: 63 RTNVRNDKLGNNETNIKNYIVD 84 >gi|331657741|ref|ZP_08358703.1| repressor protein C2 [Escherichia coli TA206] gi|315299798|gb|EFU59038.1| peptidase S24-like domain protein [Escherichia coli MS 16-3] gi|331055989|gb|EGI27998.1| repressor protein C2 [Escherichia coli TA206] Length = 216 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +++ L+ + Sbjct: 7 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALAKALQCSPDYLLK 66 Query: 76 VSPTVCS 82 ++ + Sbjct: 67 GEDSLSN 73 >gi|306833460|ref|ZP_07466587.1| transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424230|gb|EFM27369.1| transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 226 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 2/95 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R G SQ ++ + L I+ +E G + L +S +L ++F Sbjct: 4 GEKLKNIREEKGYSQAEVAKLLNISRVSYFNWENGKTKPNQKNLNLLSRLLGVEETYF-- 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 VS D + N L + +I Sbjct: 62 VSEYHIVDTYFKLNQDNRHKLENYADDLLKEQEKI 96 >gi|296876651|ref|ZP_06900699.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC 15912] gi|296432153|gb|EFH17952.1| conserved hypothetical protein [Streptococcus parasanguinis ATCC 15912] Length = 295 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 33/82 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R +GMSQE L E +G++ Q V K+E G + IS + I Sbjct: 5 EKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENMISISNLFNISIDELICN 64 Query: 77 SPTVCSDISSEENNVMDFISTP 98 T ++ ++ Sbjct: 65 ERTSLKTSEYLFESITEYDIDK 86 >gi|295093563|emb|CBK82654.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 298 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 35/76 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I +R ++Q +L + LG + + V K+E+G+ S + E+LE ++ F Sbjct: 6 IGRYIAEKRKRARLTQRQLADKLGKSDKSVSKWERGICLPDVSVYMELCEILEISVNEFL 65 Query: 75 DVSPTVCSDISSEENN 90 + + + Sbjct: 66 AGEDISEDSVREKSDE 81 >gi|291558119|emb|CBL35236.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium siraeum V10Sc8a] Length = 373 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 34/82 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R ++Q +L E +G +FQ + K+E G+ + L ++ E I + Sbjct: 9 RLSDLRKAKHITQGELAEFVGTSFQTISKWENGITMPDITVLPVLAAFFEVSIDELLGIK 68 Query: 78 PTVCSDISSEENNVMDFISTPD 99 P SSEE + F Sbjct: 69 PLKGDVYSSEETDSEKFWDNHF 90 >gi|291548676|emb|CBL24938.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 129 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 2/120 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+RI+ RR LGMSQE+L +G + + K E G+ + S+++ I++ L++ + Sbjct: 1 MTIGERIKARRDELGMSQEELAHKIGYKSKTSINKIELGIQELRQSKIKQIADALQTTPA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + T + + D + ++ + D + + ++ S++S+EK Sbjct: 61 YIMGWKETEEDQQLKKCRELFKKCHGSDAYDVVSLYLTL-DESDKNVVKTMIESLLSAEK 119 >gi|227484864|ref|ZP_03915180.1| helix-turn-helix domain protein [Anaerococcus lactolyticus ATCC 51172] gi|227237224|gb|EEI87239.1| helix-turn-helix domain protein [Anaerococcus lactolyticus ATCC 51172] Length = 115 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 46/111 (41%), Gaps = 3/111 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R LG+S EK GE +G+ + + E G N ++ I ++ + Sbjct: 4 RIKKIRKTLGLSGEKFGENIGLKRSSISQLETGTNNPTDQVIKSICLAYNVNENWLRTGN 63 Query: 78 PTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + ++ F +++ +I + + RQ I + ++S+ Sbjct: 64 GEMFIETKDSFLDSISKQFNLEELDVKILESYIDLP-PEKRQVIKDYLKSL 113 >gi|160894096|ref|ZP_02074874.1| hypothetical protein CLOL250_01650 [Clostridium sp. L2-50] gi|156864129|gb|EDO57560.1| hypothetical protein CLOL250_01650 [Clostridium sp. L2-50] Length = 222 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 30/77 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++I+ R L M+Q+ +GI + YE GV L I++ + + F Sbjct: 24 ISEKIKELRTDLKMNQKNFSAAIGIRQSTLSSYENGVVTPSNDVLLTIAQKFHVSLDWLF 83 Query: 75 DVSPTVCSDISSEENNV 91 +S + + Sbjct: 84 GLSENKVQISTLSDILW 100 >gi|53714971|ref|YP_100963.1| putative transcriptional regulator [Bacteroides fragilis YCH46] gi|265766818|ref|ZP_06094647.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52217836|dbj|BAD50429.1| putative transcriptional regulator [Bacteroides fragilis YCH46] gi|263253195|gb|EEZ24671.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 117 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 8/122 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ +G+ ++ R + G +QE++ + + I YE G + + L+ IS + Sbjct: 4 VNQIIGENLKKIRELSGFTQEQVAQSIKIERSTYSNYEGGTREIPYTILEDISNLFGCEP 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F+ + ++I + + + L+ F I ++ + I +E Sbjct: 64 FILFEDNVQTNNEIMATAFRISNLGEND--LKEIAAFKDIVKSYLK------MERIAQNE 115 Query: 131 KK 132 + Sbjct: 116 AE 117 >gi|86140912|ref|ZP_01059471.1| hypothetical protein MED217_17210 [Leeuwenhoekiella blandensis MED217] gi|85832854|gb|EAQ51303.1| hypothetical protein MED217_17210 [Leeuwenhoekiella blandensis MED217] Length = 135 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 17/147 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K PN ++G++I R + GM QE L LGI+ Q V E+ + S+L+ Sbjct: 1 MTTTK--PN----HIGRKIARIRELRGMKQEALAHELGISQQSVSHMEQSE-SLEDSKLE 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMD----FISTPDGLQLNRYFIQIDDVKVR 116 +++VL + S +I D F P L++ ++ K Sbjct: 54 EVAKVLGVTKEGIENFSEEAVFNIIGNTVTNHDNSSLFAYQPTFNPLDKLIEAYEENK-- 111 Query: 117 QKIIELVRSIVSSEKKYRTIEEECMVE 143 +L +V +EK + EE + + Sbjct: 112 ----KLYERLVQAEKDKVSYLEELLTK 134 >gi|312901966|ref|ZP_07761228.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|311290902|gb|EFQ69458.1| helix-turn-helix protein [Enterococcus faecalis TX0470] Length = 69 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 K IR R ++Q+++ E L ++ +YE G AS L +++ + + + D Sbjct: 4 KNIRSIREDNDVTQQQMAELLNVSQNTYSQYETGKIEWTASTLIKVADYFDVSVDYLLD 62 >gi|300855029|ref|YP_003780013.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300435144|gb|ADK14911.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 71 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 23/64 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +IR R ++QE+L + +T Q + E G I+++ I F Sbjct: 8 NKIRELRKERKITQEELADFCNVTRQTIISLENGKYNPSIFLAYKIAKIFNMTIEQVFIF 67 Query: 77 SPTV 80 Sbjct: 68 EEEE 71 >gi|257870115|ref|ZP_05649768.1| cupin/helix-turn-helix domain-containing protein [Enterococcus gallinarum EG2] gi|257804279|gb|EEV33101.1| cupin/helix-turn-helix domain-containing protein [Enterococcus gallinarum EG2] Length = 180 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 35/77 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R+ ++QE+LGE ++ + + E+ ++ I EVL Sbjct: 1 MEIGEKLRNLRVQKNLTQEELGERTDLSKGYISQLERDLSSPSMETFFTILEVLGVTPEE 60 Query: 73 FFDVSPTVCSDISSEEN 89 FF + EE+ Sbjct: 61 FFRQENADHQVVYREED 77 >gi|255655114|ref|ZP_05400523.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451102|ref|ZP_06892844.1| DNA-binding protein [Clostridium difficile NAP08] gi|296880545|ref|ZP_06904507.1| DNA-binding protein [Clostridium difficile NAP07] gi|296260109|gb|EFH06962.1| DNA-binding protein [Clostridium difficile NAP08] gi|296428499|gb|EFH14384.1| DNA-binding protein [Clostridium difficile NAP07] Length = 183 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 29/142 (20%), Positives = 56/142 (39%), Gaps = 9/142 (6%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PN VG+ +RL R +G+S +K + G++ + + E+G + S L IS Sbjct: 2 DNKFPN-----VGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKIS 56 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + + + I EE + ++L + + IIEL Sbjct: 57 SGFKINFTTLLNENTNTYEVIKKEEVEP--IVEQQGNMKLYPIYPFSPQRRFELFIIELE 114 Query: 124 RSIVSSEKKYRTIEEE--CMVE 143 + + + EE ++E Sbjct: 115 ENCTHVSSTHSHVLEEYVLVIE 136 >gi|126734314|ref|ZP_01750061.1| hypothetical protein RCCS2_09144 [Roseobacter sp. CCS2] gi|126717180|gb|EBA14044.1| hypothetical protein RCCS2_09144 [Roseobacter sp. CCS2] Length = 151 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 49/112 (43%), Gaps = 1/112 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ +RI+ R+ G++ + LG++ QV + E + A RL +++V + Sbjct: 3 HLYERIKDARIRAGLTVNEAASRLGVSRVQVWRMENKAETISAERLFVLADVYGIDPAVL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 F S+ N + + + T ++ R + V + ++E++R Sbjct: 63 FKGINATSQSTSALYNMIGEIV-TLVEAEVQRLDAKPPPRVVGEAVVEILRQ 113 >gi|190015751|ref|YP_001967756.1| probable transcriptional regulator [Clostridium perfringens] gi|86450173|gb|ABC96282.1| probable transcriptional regulator [Clostridium perfringens] Length = 344 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 4/125 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R +SQ +L E LG+ + YE+ L +S+++ I ++ Sbjct: 12 NIKEFRKKNKLSQAELAEKLGVARTTIGYYERAEVEPNIYTLVQLSKLMNRSIDSLLGLN 71 Query: 78 --PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 +D+++ + + FI + + F ++ K+R + + + S+K+ Sbjct: 72 HPNETTNDLNNSDLSKKIFILNKLIEKNTQSFNDLETSKLRTE--RMFNELQMSKKRTER 129 Query: 136 IEEEC 140 + E Sbjct: 130 MFNEL 134 >gi|15671987|ref|NP_266161.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|281490504|ref|YP_003352484.1| transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|12722841|gb|AAK04103.1|AE006240_1 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|281374322|gb|ADA63855.1| Transcriptional regulator [Lactococcus lactis subsp. lactis KF147] Length = 185 Score = 48.3 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 31/68 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ ++ R+ ++QE++ + L + Q + ++E L ++E+ ES +S F Sbjct: 1 MLGENLQKARLAQKLTQEEVAKELYFSRQAISRWESNKTEPNFETLIALAELYESDLSAF 60 Query: 74 FDVSPTVC 81 Sbjct: 61 AQGIEPQK 68 >gi|319945875|ref|ZP_08020125.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747940|gb|EFW00184.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] Length = 116 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 49/122 (40%), Gaps = 10/122 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++Q + E LGI+ +E+G + L I++VL I + D Sbjct: 5 ERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKKPTQDNLVKIAQVLNVSIDYLVDN 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 S + + ++ +++ + + + EL+ + +K ++ I Sbjct: 65 SDEHLKEDELDNVELLFRMNSNGLTEEEKAIFKK----------ELIEFMEKRKKAFKKI 114 Query: 137 EE 138 + Sbjct: 115 SK 116 >gi|257887020|ref|ZP_05666673.1| prophage Lp1 protein 8 [Enterococcus faecium 1,141,733] gi|257898175|ref|ZP_05677828.1| prophage Lp1 protein 8 [Enterococcus faecium Com15] gi|257823074|gb|EEV50006.1| prophage Lp1 protein 8 [Enterococcus faecium 1,141,733] gi|257836087|gb|EEV61161.1| prophage Lp1 protein 8 [Enterococcus faecium Com15] Length = 127 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 35/82 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R+ M+Q+++ + LGIT YE G S LQ ++ + + + Sbjct: 8 EKIKELRLSKKMTQQEVADKLGITRPAYTAYESGKREPDFSILQSLANIFDVTTDYLLGR 67 Query: 77 SPTVCSDISSEENNVMDFISTP 98 + T ++ + + + Sbjct: 68 NKTPKWADENDLIELDKMLDSN 89 >gi|253577419|ref|ZP_04854735.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843219|gb|EES71251.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 76 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 33/73 (45%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +G K + + + + +I+ R LG++Q +L G+T Q + E Sbjct: 1 MGESKTFDILVVPMNNKIKQFRKRLGLTQNELAAECGVTRQTINCVENNRYDPTLELAFK 60 Query: 62 ISEVLESPISFFF 74 ++++L++ + F Sbjct: 61 LAKILQTKVDELF 73 >gi|226325617|ref|ZP_03801135.1| hypothetical protein COPCOM_03430 [Coprococcus comes ATCC 27758] gi|225205741|gb|EEG88095.1| hypothetical protein COPCOM_03430 [Coprococcus comes ATCC 27758] Length = 154 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I+ R L +SQE+L E + +T Q + +E + L +S + + Sbjct: 20 MELSIQIKKYRTELHLSQEELAEKVYVTRQTISNWENEKSYPDIHSLLLLSSLFNVSLDQ 79 Query: 73 FFDVSPTVCSDISSEEN 89 +I SE+ Sbjct: 80 LIKGDIEKMKEIISEQE 96 >gi|225573061|ref|ZP_03781816.1| hypothetical protein RUMHYD_01252 [Blautia hydrogenotrophica DSM 10507] gi|225039587|gb|EEG49833.1| hypothetical protein RUMHYD_01252 [Blautia hydrogenotrophica DSM 10507] Length = 110 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 29/83 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R G +Q +G L I Q YE G I+E+L ++ Sbjct: 8 NNLRVLRTARGYTQAYMGHKLHIQRQSYCNYENGQRSPSLEITSSIAEILGVDLNTLITA 67 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 + + D++S P Sbjct: 68 KLPADVLTKEDLAVLEDYLSLPP 90 >gi|167465026|ref|ZP_02330115.1| Transcriptional regulator, MerR family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 181 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK++ R G+S +L + IT + + E+G+ L+ +++ L+ P Sbjct: 3 NIDIGKKVEKYRKAKGLSSRELAKLAEITPSMLSQIERGLANPSIQTLKVLAKTLDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + T D+ + I +L Sbjct: 63 SFL-LEETNTDDLIVRSSKRKKMIIDNLSYELL 94 >gi|19705233|ref|NP_602728.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296329087|ref|ZP_06871592.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19713186|gb|AAL94027.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153806|gb|EFG94619.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 184 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 38/85 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R GMS +L + ++ + + E+G L+ I+ L+ +++ Sbjct: 1 MTIGEKLKKSRNDKGMSLRELATKVELSASFLSQIEQGKASPSIENLKKIAHTLDVRVAY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + +I + + +I + Sbjct: 61 LIEDEEDDIRNIEYIKKENIRYIES 85 >gi|89896477|ref|YP_519964.1| hypothetical protein DSY3731 [Desulfitobacterium hafniense Y51] gi|89335925|dbj|BAE85520.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 373 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 19/134 (14%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R G++Q++L +G++ V K+E G + + L ++ I SP + Sbjct: 19 RREKGITQDELAAYIGVSKASVSKWETGQSYPDITFLPLLAAYFNISIDELMSYSPQMER 78 Query: 83 DISSE--ENNVMDFISTPD------GLQLNRYFIQIDDVKVRQKIIELVR------SIVS 128 ++ DF S P L + + +++LV+ + Sbjct: 79 SDIAKLYTRLAADFASRPFEDVIAECAALIKKYYSCFP-----LLVQLVKLYTNHFMLAG 133 Query: 129 SEKKYRTIEEECMV 142 ++++ + E + Sbjct: 134 TQERQEVLLNETVT 147 >gi|152968233|ref|YP_001364017.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151362750|gb|ABS05753.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 70 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 25/67 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R G +Q L + L ++ Q V E G ++ +LE PI F Sbjct: 3 NRIRALRTERGWTQAALADLLDVSRQTVNALETGRYDPSLPLAFRLARLLERPIEEIFVY 62 Query: 77 SPTVCSD 83 T Sbjct: 63 DETSAPA 69 >gi|332523855|ref|ZP_08400107.1| putative HTH-type transcriptional regulator PrtR [Streptococcus porcinus str. Jelinkova 176] gi|332315119|gb|EGJ28104.1| putative HTH-type transcriptional regulator PrtR [Streptococcus porcinus str. Jelinkova 176] Length = 230 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 3/115 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R MSQE L + +G++ + +E+G N L + + +F Sbjct: 4 GKQLKAIRQKEKMSQENLSDQIGVSKMTISNWEQGKNNPNQKHLAQLVAIFRVSEDYFNS 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI--IELVRSIVS 128 S + +N ++ L L + I ++K+ + S+ + Sbjct: 64 YSTILIPYKQLNSDNQKKVVTFSQTL-LAKQSKVIAISTPKKKLYRYRVYESLSA 117 >gi|291547752|emb|CBL20860.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 160 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I++ R +SQE+L + ++ Q + +E + + L +SE+ + + Sbjct: 1 MELGKQIKMHRQEAHLSQEELANRVYVSRQTISNWENDKSYPDVNSLVLLSEIFQISLDN 60 Query: 73 FFDVSPTVCSDIS-SEENNVMDFISTPDGLQLN 104 V D+ EE M+ + L Sbjct: 61 LIKGDIEVMKDVIQKEEIEKMNRYGKSYTIMLI 93 >gi|291449844|ref|ZP_06589234.1| regulatory protein [Streptomyces albus J1074] gi|291352793|gb|EFE79695.1| regulatory protein [Streptomyces albus J1074] Length = 202 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 27/79 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G + L GI+ + + E G R L I+ + P+ Sbjct: 18 VGPRLRALRKERGATLAGLSAATGISVSTLSRLESGNRRPSLELLLPIAAAHDVPLDRLV 77 Query: 75 DVSPTVCSDISSEENNVMD 93 P + E + Sbjct: 78 GAPPAGDPRVRLEPIEQGN 96 >gi|229169105|ref|ZP_04296820.1| Transcriptional regulator, MerR [Bacillus cereus AH621] gi|228614333|gb|EEK71443.1| Transcriptional regulator, MerR [Bacillus cereus AH621] Length = 181 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ I+ L P+ + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + EE + ++ Sbjct: 61 LLLEQKDRLKIVKKEERKYSVYGKDEQRIEHV 92 >gi|126731243|ref|ZP_01747050.1| DNA-binding protein, putative [Sagittula stellata E-37] gi|126708154|gb|EBA07213.1| DNA-binding protein, putative [Sagittula stellata E-37] Length = 206 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D +G R+R R + E+ + G+ + K E G L+ ++ LE Sbjct: 23 PLD--LGLRVRELRKEKDWTLEQAAKKAGLARSTLSKIENGQMSPTYDALKKLATGLEIS 80 Query: 70 ISFFFD 75 + F Sbjct: 81 VPQLFT 86 >gi|27366450|ref|NP_761978.1| putative transcriptional regulator [Vibrio vulnificus CMCP6] gi|27362651|gb|AAO11505.1| Putative transcriptional regulator [Vibrio vulnificus CMCP6] Length = 105 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 25/124 (20%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLE 67 D + R++ R ++Q+ LG +G+ + YEKG + S L+ +++ L Sbjct: 3 DNPIPMRLKKARKHAKITQKNLGIMIGMDESSASGRMNHYEKGRHTPDISTLRKMADALG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 P+++FF +L ++ + K R ++++ V+S+ Sbjct: 63 VPLNYFFCEDEASA--------------------ELATAISRLSEAK-RNQVLKFVKSLE 101 Query: 128 SSEK 131 S++ Sbjct: 102 ESDE 105 >gi|15895738|ref|NP_349087.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15025492|gb|AAK80427.1|AE007746_14 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325509888|gb|ADZ21524.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 78 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++QE+LG +G++ Q + E IS+V I + F Sbjct: 3 NRLKELREAFGLTQEQLGNLIGVSRQAINSIETEKCEPSIWLAYDISKVFHKSIEYIFLF 62 Query: 77 SPTVCSDISSEEN 89 + + + Sbjct: 63 EESEKKSRAKQIR 75 >gi|15614006|ref|NP_242309.1| transcriptional regulator [Bacillus halodurans C-125] gi|10174060|dbj|BAB05162.1| transcriptional regulator [Bacillus halodurans C-125] Length = 107 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 2/92 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 +R+R R G++ ++LG+ + + + YE G + L ++E S + Sbjct: 4 ERLRYLRKKHGLTMKELGKKINVAESTISGYENGNRKPDMDTLVKMAEYFNSSTDYLLGR 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 P E+ + T + ++ R Sbjct: 64 TEEPAPYQKQPPEKQFLYSETVTDEEVEFLRE 95 >gi|332880985|ref|ZP_08448655.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681159|gb|EGJ54086.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 117 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 37/87 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ ++ R + G +QE++ + +GI YE G V L+ +S + Sbjct: 4 INQIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYEGGTREVPYDILEKLSNLFGCEP 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST 97 F+ + ++I + + D Sbjct: 64 FILFEDNVQADNEILATAFRISDLEDD 90 >gi|326201176|ref|ZP_08191048.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325988744|gb|EGD49568.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 183 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 32/82 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+ + R ++ +G+ +G++ KYEK + L +E+ + + Sbjct: 1 MIGERLAMLRNEKKLTMRAIGKLVGVSDAAWVKYEKNRAEPSIATLCKAAELFNVSLDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 + + N F+ Sbjct: 61 MGRTNIRDPKLVDTANIQNVFL 82 >gi|239977932|ref|ZP_04700456.1| putative transcriptional regulator [Streptomyces albus J1074] Length = 211 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 27/79 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G + L GI+ + + E G R L I+ + P+ Sbjct: 27 VGPRLRALRKERGATLAGLSAATGISVSTLSRLESGNRRPSLELLLPIAAAHDVPLDRLV 86 Query: 75 DVSPTVCSDISSEENNVMD 93 P + E + Sbjct: 87 GAPPAGDPRVRLEPIEQGN 105 >gi|269838117|ref|YP_003320345.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787380|gb|ACZ39523.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 68 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G +Q+ LG +G++ Q + E G ++ V E+ I F Sbjct: 3 NRVREARQKQGWTQDDLGRRVGVSRQTINAIENGRYDPSLPLAFKLARVFETTIEDLFFP 62 Query: 77 SPTVCS 82 T + Sbjct: 63 EETPVT 68 >gi|229155430|ref|ZP_04283539.1| hypothetical protein bcere0010_16230 [Bacillus cereus ATCC 4342] gi|228627991|gb|EEK84709.1| hypothetical protein bcere0010_16230 [Bacillus cereus ATCC 4342] Length = 157 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++++ R SQE + + +G+T Q V K+E + L +SE+ + Sbjct: 1 MSLGEQLKKLRESKEFSQEDVAKKIGVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDK 60 Query: 73 FFDVSPTVCSDI 84 + I Sbjct: 61 LIKGNQNTKEKI 72 >gi|153816336|ref|ZP_01969004.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC 27756] gi|145846297|gb|EDK23215.1| hypothetical protein RUMTOR_02588 [Ruminococcus torques ATCC 27756] Length = 126 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 6/113 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R G++Q+KLGE GI ++KYE G LQ I++ L+ P++ Sbjct: 6 GDMIRKCRTEKGLTQKKLGELCGIADSNIRKYESGNQNPKIETLQKIADALDIPVNRLLA 65 Query: 76 VSPTVCSDISSEENNV------MDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++ + + D L+ + + + +++ EL Sbjct: 66 GKIISRDELKEKLSEYGLTHLVPDTEEERTVLENCKKLNETGKKEAAKRVEEL 118 >gi|167036306|ref|YP_001671537.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166862794|gb|ABZ01202.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 182 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVE 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF ++ P + I + + ++D ++L Sbjct: 61 FFSVELEPESPTQIVYKAHELIDISDGAVTMKLV 94 >gi|90419571|ref|ZP_01227481.1| putative transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90336508|gb|EAS50249.1| putative transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 167 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 51/115 (44%), Gaps = 17/115 (14%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R LG++ +L LG+ + ++ +E+ + A+RL +S +L ++ Sbjct: 62 GGRIQRGRESLGITTAELAARLGVKPETMRGWERDRSEPRANRLITLSGILGVSPAWLLG 121 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 V + +EN + ++D+++ R+ +++ R I E Sbjct: 122 GYGEVPDTVDLDENGMA---------------ARLDNLRARRDVLD--REIARLE 159 >gi|78187740|ref|YP_375783.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78167642|gb|ABB24740.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 390 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G R+R RM LG SQEKL EC G+ + E+G + + + I+ L Sbjct: 7 DSITRLLGLRVRRWRMALGYSQEKLAECAGLHRTYIGTVERGEQNITVANAEKIANALHV 66 Query: 69 PISFFF 74 +S Sbjct: 67 TLSDIL 72 >gi|319936820|ref|ZP_08011232.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319808088|gb|EFW04660.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 220 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 R ++QE+L E L ++ Q + K+E GV L +S + I F Sbjct: 9 YRKKNMLTQEELAEKLCVSRQTITKWENGVITPSLEYLIDLSHIFGITIDHFIKDDD 65 >gi|291549688|emb|CBL25950.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 253 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R ++Q+ L E L ++ + V K+E+G++ L I+++L+ ++ Sbjct: 10 GLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELLR 69 Query: 76 VSPTVCSDISS 86 Sbjct: 70 GEKIDTQKNID 80 >gi|228924835|ref|ZP_04087992.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834844|gb|EEM80326.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 131 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ +R R + G+S KLG LG+T + +E G ++ I+ + F+ Sbjct: 7 GQNLRNLRTLKGISLHKLGIELGVTGSAISSWELGNKEPNFDMVKKIAIYFLVSTDYLFN 66 >gi|226324082|ref|ZP_03799600.1| hypothetical protein COPCOM_01860 [Coprococcus comes ATCC 27758] gi|225207631|gb|EEG89985.1| hypothetical protein COPCOM_01860 [Coprococcus comes ATCC 27758] Length = 209 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G RI+ RR+ L ++Q + E +G+T + +YE G + +SE L + + Sbjct: 10 IGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ + + QL + +D + ++ +++ Sbjct: 70 KGETDEYETDITDKRELQIRDAMGDILEQLPLALTKEEDAFSKDLLLLMLKQ 121 >gi|224541161|ref|ZP_03681700.1| hypothetical protein CATMIT_00314 [Catenibacterium mitsuokai DSM 15897] gi|224525912|gb|EEF95017.1| hypothetical protein CATMIT_00314 [Catenibacterium mitsuokai DSM 15897] Length = 319 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 2/100 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R G SQE+L LG++ Q V K+E + R+ +SE+ + Sbjct: 1 MILADKIIEERKKNGWSQEELASKLGVSRQAVSKWESSGSIPDLQRILQMSELFGVTTDY 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 ++ ++ + + L + +I Sbjct: 61 LLKDEIEEERQNEYVETKTIKVSMEEANRYLDMKSRGSRI 100 >gi|167766444|ref|ZP_02438497.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1] gi|167711853|gb|EDS22432.1| hypothetical protein CLOSS21_00950 [Clostridium sp. SS2/1] Length = 260 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R ++Q+ L E L ++ + V K+E+G++ L I+++L+ ++ Sbjct: 17 GLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELLR 76 Query: 76 VSPTVCSDISS 86 Sbjct: 77 GEKIDTQKNID 87 >gi|146298916|ref|YP_001193507.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146153334|gb|ABQ04188.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 129 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 50/139 (35%), Gaps = 14/139 (10%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + PN ++G++I R + M QE L LG QQ + V +L+ Sbjct: 1 MSTLTKPN----HIGRKISRIRELRDMKQEALAYALG-MSQQSISIIENSETVDEEKLKA 55 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+EVL + S +I + + ++ + K++E Sbjct: 56 IAEVLGVSAEGIKNFSEEAVLNIIGNTYHDSNVVNGNAYS---------CNFNPLDKMVE 106 Query: 122 LVRSIVSSEKKYRTIEEEC 140 L +V +EK E+ Sbjct: 107 LFERLVQAEKDKVEYLEKL 125 >gi|86131733|ref|ZP_01050330.1| HTH-type transcriptional regulator [Dokdonia donghaensis MED134] gi|85817555|gb|EAQ38729.1| HTH-type transcriptional regulator [Dokdonia donghaensis MED134] Length = 251 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IR R + +SQ+ E + + YE+G + + I+ PI Sbjct: 5 GKNIRKIRTVKTLSQQSFAELFDLKRGTLGAYEEGRSEPKIDTVIKIANYFSIPIDDLLT 64 Query: 76 VS 77 Sbjct: 65 KE 66 >gi|313898624|ref|ZP_07832159.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956508|gb|EFR38141.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 112 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 16/120 (13%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +D ++G I+ ++ M+Q++L + L I+ Q + Y L IS++L Sbjct: 4 NQIDTDLGAAIKEGIILNNMTQKQLAKALHISQQTLSCYIHNQRTPNIHDLVAISQILNL 63 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 I + + + +D I + ++L D K ++ + + V ++ Sbjct: 64 DIYVLL--------GLKKDIPDHLDHIIYKNIMKL--------DHKGKKMVYDYVERLLK 107 >gi|212638621|ref|YP_002315141.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212560101|gb|ACJ33156.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 115 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 25/68 (36%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R + + QE + + +G+ YE+G L I+ + + Sbjct: 12 GDRLQELRNKMKLRQEDVAKKIGVGRTTYAMYEQGKREPDYETLLKIANFFGVSVDYLLT 71 Query: 76 VSPTVCSD 83 ++ Sbjct: 72 GQDKTDNE 79 >gi|114765327|ref|ZP_01444444.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114542307|gb|EAU45336.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 206 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 2/74 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G + P+D +G R+R R + E+ G+ + K E G L+ Sbjct: 15 TGEEASAEPLD--LGARVRELRKARDWTLEQAAREAGLARSTLSKIENGQMSPTYDALKK 72 Query: 62 ISEVLESPISFFFD 75 ++ L + F Sbjct: 73 LAVGLGIGVPQLFT 86 >gi|322389322|ref|ZP_08062881.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis ATCC 903] gi|321143986|gb|EFX39405.1| hypothetical protein HMPREF8577_0351 [Streptococcus parasanguinis ATCC 903] Length = 291 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 33/82 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R +GMSQE L E +G++ Q V K+E G + IS + I Sbjct: 5 EKLKSIRKQVGMSQELLAEKIGVSRQAVTKWETGAGIPDIENIISISNLFNISIDELICN 64 Query: 77 SPTVCSDISSEENNVMDFISTP 98 T ++ ++ Sbjct: 65 ERTTLKTSEYLFESITEYDIDK 86 >gi|253578754|ref|ZP_04856025.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849697|gb|EES77656.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 206 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 35/71 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I+ R+ M+QE+L + I+F ++KYE +L I++ L ++ F D Sbjct: 4 GEIIKYFRLARNMTQEQLAQDAEISFSTLRKYEANERNPKYEQLSKIADALGISVNLFMD 63 Query: 76 VSPTVCSDISS 86 SD+ S Sbjct: 64 FEIQSVSDLFS 74 >gi|255531529|ref|YP_003091901.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344513|gb|ACU03839.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 121 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 26/74 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R +SQ + L ++ + E G + L I+ + Sbjct: 8 KEIGERIKDLRTQHNLSQAFIANILNLSRSNYSQIELGNQYPSFNTLHEIARYYSKTYDW 67 Query: 73 FFDVSPTVCSDISS 86 + T + + Sbjct: 68 LLHGTDTKAATENP 81 >gi|83719403|ref|YP_440667.1| XRE family transcriptional regulator [Burkholderia thailandensis E264] gi|83653228|gb|ABC37291.1| possible transcriptional regulator, XRE family [Burkholderia thailandensis E264] Length = 128 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 31/84 (36%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+ I +GKRI+ R SQE L I + E+G+ L +I L Sbjct: 32 PAPISIALGKRIKQCRHEAEKSQETLAFEAHIDRTYISSIERGIANPSVETLANICYSLN 91 Query: 68 SPISFFFDVSPTVCSDISSEENNV 91 ++ F V + E Sbjct: 92 ITLAELFAPLDGVSLKPTGERRAN 115 >gi|83952018|ref|ZP_00960750.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83837024|gb|EAP76321.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 207 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R + E+ + G+ + K E G L+ ++ LE + F Sbjct: 27 LGQRVRELRKARDWTLEQAAKQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISVPQLF 86 Query: 75 D 75 Sbjct: 87 T 87 >gi|295106954|emb|CBL04497.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 73 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 24/64 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI+ R G+SQ LG++ + E G V + L I+ L + Sbjct: 9 RRLGLRIKDLREERGLSQYACAPLLGVSRTYLADVECGRRNVSLATLDSIARGLGISLEE 68 Query: 73 FFDV 76 Sbjct: 69 LLKG 72 >gi|288905287|ref|YP_003430509.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|306831364|ref|ZP_07464524.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978272|ref|YP_004287988.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732013|emb|CBI13578.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] gi|304426600|gb|EFM29712.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178200|emb|CBZ48244.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 226 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 2/95 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R G SQ ++ + L I+ +E G + L +S++L ++F Sbjct: 4 GEKLKNIREEKGYSQAEVAKLLNISRVSYFNWENGKTKPNQKNLNLLSQLLGVEETYF-- 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 VS D + N L + +I Sbjct: 62 VSEYDIVDTYFKLNKDNRHKLENYADDLLKEQEKI 96 >gi|284008783|emb|CBA75519.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 369 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 9/116 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R++ R+ LG+SQE E G+ YEK A L ++ L +++ Sbjct: 257 VGDRLKSERLRLGLSQEIFAERCGVKKLTQYNYEKSERHPDAGYLIA-AKALGVDLNYVM 315 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 +E + +D + + ++ F I + R+ + ++ + Sbjct: 316 TGE-------RHDEASALDVVRDEEEAEVLTAFRHIP-GETREVAKRTLTAMAEKK 363 >gi|300768444|ref|ZP_07078344.1| HicB family toxin-antitoxin system [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493962|gb|EFK29130.1| HicB family toxin-antitoxin system [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 68 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R LG +Q KL + G++ V E A L +++ + + Sbjct: 1 MIGSEIKKIRSKLGWTQAKLADAAGVSQSTVNTLENRTKHPDAVTLNLLAKAMGVTVDDL 60 Query: 74 FDVSP 78 + Sbjct: 61 LEPKE 65 >gi|226526965|ref|YP_002790984.1| transcriptional regulator [Lactobacillus brevis] gi|226442557|dbj|BAH56427.1| transcriptional regulator [Lactobacillus brevis] Length = 210 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ ++++ R ++Q ++ E L ++ + + +E + + L +S++ PI Sbjct: 1 MNISQKLKQCRSAKNLTQAEVAEQLHVSRKTISGWENERSYPDPTSLIKLSDLYHVPIDD 60 Query: 73 FFDVS 77 Sbjct: 61 LLRDE 65 >gi|91790971|ref|YP_551922.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91700851|gb|ABE47024.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 107 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++IR R G++ E L G++ + + R A +LQ I++VL +SFF Sbjct: 5 LGEKIRSYRTKKGLTLEALAHQAGLSKSYLWELENRESQRPSAEKLQGIADVLGVDVSFF 64 Query: 74 FDVSPTVCSDISSEENNVMDF 94 D S + ++ +F Sbjct: 65 VDDSVDNPQEAHRDKQFFRNF 85 >gi|147668729|ref|YP_001213547.1| phage repressor like transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269677|gb|ABQ16669.1| phage repressor like transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] Length = 207 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 1/87 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESP 69 +DI +G +++ R+ GM+Q KL + G+T + E L I+ L Sbjct: 1 MDIQIGLKVKQLRIARGMTQAKLADASGLTRGYISMLELRKSTMPSYEALSKIARALGVD 60 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFIS 96 I F V + E ++ Sbjct: 61 IKEFKTDPEIVRLESPEEVLRKYQLMA 87 >gi|15924088|ref|NP_371622.1| Cro/CI family transcriptional regulator protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926683|ref|NP_374216.1| hypothetical protein SA0949 [Staphylococcus aureus subsp. aureus N315] gi|21282710|ref|NP_645798.1| hypothetical protein MW0981 [Staphylococcus aureus subsp. aureus MW2] gi|49485936|ref|YP_043157.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651707|ref|YP_185971.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus COL] gi|87161040|ref|YP_493696.1| hypothetical protein SAUSA300_0998 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194797|ref|YP_499594.1| hypothetical protein SAOUHSC_01045 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267591|ref|YP_001246534.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150393646|ref|YP_001316321.1| hypothetical protein SaurJH1_1180 [Staphylococcus aureus subsp. aureus JH1] gi|151221176|ref|YP_001331998.1| hypothetical protein NWMN_0964 [Staphylococcus aureus subsp. aureus str. Newman] gi|156979421|ref|YP_001441680.1| hypothetical protein SAHV_1090 [Staphylococcus aureus subsp. aureus Mu3] gi|161509281|ref|YP_001574940.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140502|ref|ZP_03564995.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253316351|ref|ZP_04839564.1| hypothetical protein SauraC_09456 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731709|ref|ZP_04865874.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733667|ref|ZP_04867832.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255005885|ref|ZP_05144486.2| hypothetical protein SauraM_05430 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795171|ref|ZP_05644150.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258407120|ref|ZP_05680269.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258421788|ref|ZP_05684709.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A9719] gi|258423598|ref|ZP_05686488.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|258436152|ref|ZP_05689135.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258443359|ref|ZP_05691702.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258444969|ref|ZP_05693286.1| transcriptional regulator [Staphylococcus aureus A6300] gi|258449856|ref|ZP_05697954.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258451955|ref|ZP_05699971.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258454955|ref|ZP_05702918.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A5937] gi|262048684|ref|ZP_06021566.1| hypothetical protein SAD30_1514 [Staphylococcus aureus D30] gi|262052206|ref|ZP_06024412.1| hypothetical protein SA930_0897 [Staphylococcus aureus 930918-3] gi|269202709|ref|YP_003281978.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282894125|ref|ZP_06302356.1| DNA-binding protein [Staphylococcus aureus A8117] gi|282925282|ref|ZP_06332939.1| DNA-binding protein [Staphylococcus aureus A9765] gi|282928620|ref|ZP_06336217.1| DNA-binding protein [Staphylococcus aureus A10102] gi|284024023|ref|ZP_06378421.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|294848087|ref|ZP_06788834.1| DNA-binding protein [Staphylococcus aureus A9754] gi|295405902|ref|ZP_06815711.1| DNA-binding protein [Staphylococcus aureus A8819] gi|296276499|ref|ZP_06859006.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus MR1] gi|297208264|ref|ZP_06924694.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246372|ref|ZP_06930216.1| DNA-binding protein [Staphylococcus aureus A8796] gi|300912341|ref|ZP_07129784.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304381344|ref|ZP_07363997.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13700899|dbj|BAB42195.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] gi|14246868|dbj|BAB57260.1| similar to transcriptional regulator Cro/CI family [Staphylococcus aureus subsp. aureus Mu50] gi|21204148|dbj|BAB94846.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49244379|emb|CAG42807.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285893|gb|AAW37987.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus COL] gi|87127014|gb|ABD21528.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202355|gb|ABD30165.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740660|gb|ABQ48958.1| transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus JH9] gi|149946098|gb|ABR52034.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|150373976|dbj|BAF67236.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721556|dbj|BAF77973.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160368090|gb|ABX29061.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724523|gb|EES93252.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728367|gb|EES97096.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257789143|gb|EEV27483.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257841275|gb|EEV65720.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257842121|gb|EEV66549.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A9719] gi|257846299|gb|EEV70323.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|257848841|gb|EEV72826.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257851449|gb|EEV75388.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257856091|gb|EEV79009.1| transcriptional regulator [Staphylococcus aureus A6300] gi|257856776|gb|EEV79679.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257860170|gb|EEV83002.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257862835|gb|EEV85600.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A5937] gi|259159877|gb|EEW44915.1| hypothetical protein SA930_0897 [Staphylococcus aureus 930918-3] gi|259163140|gb|EEW47700.1| hypothetical protein SAD30_1514 [Staphylococcus aureus D30] gi|262074999|gb|ACY10972.1| Cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|269940593|emb|CBI48972.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus TW20] gi|282589659|gb|EFB94745.1| DNA-binding protein [Staphylococcus aureus A10102] gi|282592558|gb|EFB97568.1| DNA-binding protein [Staphylococcus aureus A9765] gi|282763611|gb|EFC03740.1| DNA-binding protein [Staphylococcus aureus A8117] gi|285816779|gb|ADC37266.1| putative DNA-binding protein [Staphylococcus aureus 04-02981] gi|294824887|gb|EFG41309.1| DNA-binding protein [Staphylococcus aureus A9754] gi|294969337|gb|EFG45357.1| DNA-binding protein [Staphylococcus aureus A8819] gi|296887003|gb|EFH25906.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176738|gb|EFH35998.1| DNA-binding protein [Staphylococcus aureus A8796] gi|300886587|gb|EFK81789.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302332708|gb|ADL22901.1| transcriptional regulator Cro/CI family [Staphylococcus aureus subsp. aureus JKD6159] gi|302750922|gb|ADL65099.1| transcriptional regulator Cro/CI family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340327|gb|EFM06268.1| cro/CI family transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829492|emb|CBX34334.1| helix-turn-helix family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130316|gb|EFT86303.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315196128|gb|EFU26485.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320141086|gb|EFW32933.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143143|gb|EFW34933.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323440647|gb|EGA98357.1| transcriptional regulator [Staphylococcus aureus O11] gi|323441674|gb|EGA99320.1| transcriptional regulator [Staphylococcus aureus O46] gi|329313766|gb|AEB88179.1| Transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus T0131] gi|329730799|gb|EGG67178.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21189] Length = 179 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF S EE + D Sbjct: 61 FFKDSENEKVLYKKEEQVIYD 81 >gi|261339303|ref|ZP_05967161.1| hypothetical protein ENTCAN_05544 [Enterobacter cancerogenus ATCC 35316] gi|288319163|gb|EFC58101.1| transcriptional regulator, Cro/CI family [Enterobacter cancerogenus ATCC 35316] Length = 185 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 8/105 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P GKR+ R LG+SQ + E G+T + E+ S LQ Sbjct: 1 MSDDGLAP-------GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQ 53 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +V +S FF + + ++++++ S ++L Sbjct: 54 KLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLV 98 >gi|152969575|ref|YP_001334684.1| DNA-binding transcriptional repressor PuuR [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580692|ref|YP_002239362.1| transcriptional regulator PuuR [Klebsiella pneumoniae 342] gi|238894056|ref|YP_002918790.1| DNA-binding transcriptional repressor PuuR [Klebsiella pneumoniae NTUH-K2044] gi|262043620|ref|ZP_06016729.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288936213|ref|YP_003440272.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|290510732|ref|ZP_06550102.1| DNA-binding transcriptional repressor PuuR [Klebsiella sp. 1_1_55] gi|330010156|ref|ZP_08306698.1| HTH-type transcriptional regulator PuuR [Klebsiella sp. MS 92-3] gi|150954424|gb|ABR76454.1| putative oxidoreductase/putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569750|gb|ACI11526.1| transcriptional regulator PuuR [Klebsiella pneumoniae 342] gi|238546372|dbj|BAH62723.1| putative oxidoreductase/putative regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259038958|gb|EEW40120.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288890922|gb|ADC59240.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] gi|289777448|gb|EFD85446.1| DNA-binding transcriptional repressor PuuR [Klebsiella sp. 1_1_55] gi|328534622|gb|EGF61198.1| HTH-type transcriptional regulator PuuR [Klebsiella sp. MS 92-3] Length = 185 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 8/105 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P GKR+ R LG+SQ + E G+T + E+ S LQ Sbjct: 1 MSDDGLAP-------GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQ 53 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +V +S FF + + ++++++ S ++L Sbjct: 54 KLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLV 98 >gi|87199050|ref|YP_496307.1| XRE family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134731|gb|ABD25473.1| transcriptional regulator, XRE family [Novosphingobium aromaticivorans DSM 12444] Length = 464 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 50/128 (39%), Gaps = 6/128 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R LG++Q+ + E LGI+ + E+ + A L ++ + ++ Sbjct: 6 LYLGPRLKRIRRELGLTQQAMAEELGISPSYIALIERNQRPLTADLLLRLARAYKLDMAD 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKIIELVRSIVSSEK 131 + + + D I + L V + ++ L + ++ Sbjct: 66 L--AADERDDYARRLSDALRDPIFSDIDLPALEVADVAASFPGVTEAMLRLY---GAWQR 120 Query: 132 KYRTIEEE 139 + + + E+ Sbjct: 121 EQQALAEQ 128 >gi|57234914|ref|YP_181083.1| DNA-binding protein, putative [Dehalococcoides ethenogenes 195] gi|57225362|gb|AAW40419.1| DNA-binding protein, putative [Dehalococcoides ethenogenes 195] Length = 133 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 4/119 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR +R+ + ++ ++L ++ + + E+G A L+ I+ L F Sbjct: 13 LGEIIRQQRVKIPLTLQELASKTSVSPSHLGRIERGERFPSARILKRIARPLGFEEDELF 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK----IIELVRSIVSS 129 ++ + S ++ISTP L + + Q+ I+ +++SI S Sbjct: 73 TLAGYLTPQKDSISEMEAEYISTPRQLDPYVAKVLAQEPIELQRAVIAILAMLKSISKS 131 >gi|95931307|ref|ZP_01314023.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] gi|95132638|gb|EAT14321.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] Length = 219 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 28/66 (42%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ N+G +I+ R ++ + + G + + + E + L ++ + Sbjct: 32 NVLEYNIGAKIKELRKARKLTLQAVATETGFSPALISQIENNNVSPPIATLSKLARFFDV 91 Query: 69 PISFFF 74 IS FF Sbjct: 92 KISHFF 97 >gi|327191632|gb|EGE58643.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 225 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 32 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 91 Query: 69 PISFFFDVSPTVCSDI 84 P++ FF + + Sbjct: 92 PLTAFFRRYEEPRNAV 107 >gi|332655107|ref|ZP_08420848.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332515967|gb|EGJ45576.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 316 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 34/69 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R G++Q++L + L ++ Q V K+E+G+N + L+ +S+ L +S Sbjct: 15 GALIGQARREKGLTQKELAQALHVSPQAVSKWERGLNFPDLALLEALSDQLGLTVSELLS 74 Query: 76 VSPTVCSDI 84 +P Sbjct: 75 GTPGEPPQE 83 >gi|332654987|ref|ZP_08420729.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332516330|gb|EGJ45938.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 118 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 41/98 (41%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 1 MPIDDLTALGQKMREARKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + + + +++ + + L Sbjct: 61 PISLDTLINPDVSPEDEGATQMKMLYCSCPSGMRETLL 98 >gi|291551015|emb|CBL27277.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 209 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G RI+ RR+ L ++Q + E +G+T + +YE G + +SE L + + Sbjct: 10 IGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ + + QL + +D + ++ +++ Sbjct: 70 KGETDEYETDITDKRELQIRDAMGDILEQLPLALTKEEDAFSKDLLLLMLKQ 121 >gi|288959791|ref|YP_003450131.1| transcriptional regulator [Azospirillum sp. B510] gi|288912099|dbj|BAI73587.1| transcriptional regulator [Azospirillum sp. B510] Length = 118 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 36/84 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GKR+R R +SQE + + + + V E+G L +S L Sbjct: 1 MSDDLKRRIGKRLRALRESRALSQEDVAAAIDRSVETVSNIERGRVLAALETLDRLSRRL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENN 90 + P+ FFD V S + + Sbjct: 61 DVPLVDFFDDGEAVVSPARAATDM 84 >gi|241763075|ref|ZP_04761136.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] gi|241367858|gb|EER62090.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] Length = 121 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 50/120 (41%), Gaps = 10/120 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI +R G++Q +L E LG++ Q VQ YE G R+ + L ++ L + Sbjct: 12 VTLGERIAAQRQACGITQVQLAEVLGVSQQTVQAYEVGRRRIQVAALPTVARTLSLSLEE 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F + + + + + + R +I+++ ++++ Sbjct: 72 LFGEDTQARRSKRGPASKLENQLER---------ISTLPKPRQR-MVIDVIEAMLAQHSS 121 >gi|227873617|ref|ZP_03991855.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840535|gb|EEJ50927.1| transcriptional regulator [Oribacterium sinus F0268] Length = 158 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 36/95 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ IR R G++Q + E +G++ + +YE G + + + I + + Sbjct: 1 MIGENIRKLRHTQGLTQPEFAERIGVSRNSLSRYENGSSPISTDIIDRICQAFQVSYREI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + ++ +D L R + Sbjct: 61 VGEEKMINPLEEYQLSSKIDLFKERAASILARLYH 95 >gi|225575392|ref|ZP_03784002.1| hypothetical protein RUMHYD_03482 [Blautia hydrogenotrophica DSM 10507] gi|225037337|gb|EEG47583.1| hypothetical protein RUMHYD_03482 [Blautia hydrogenotrophica DSM 10507] Length = 167 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 32/78 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+++ R G SQ++L + L ++ Q + +E + + ++++ + + Sbjct: 8 MLGEKLMTLRKKSGYSQQELADRLKVSRQTISNWELNQGAPSIGKAKELADIYKISLDDL 67 Query: 74 FDVSPTVCSDISSEENNV 91 V + E + Sbjct: 68 VGDEVEVVARKKREPDLH 85 >gi|218515232|ref|ZP_03512072.1| putative transcriptional regulator protein [Rhizobium etli 8C-3] Length = 238 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 45 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 104 Query: 69 PISFFFDVSPTVCSDI 84 P++ FF + + Sbjct: 105 PLTAFFRRYEEPRNAV 120 >gi|218508625|ref|ZP_03506503.1| putative transcriptional regulator protein [Rhizobium etli Brasil 5] Length = 225 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 32 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 91 Query: 69 PISFFFDVSPTVCSDI 84 P++ FF + + Sbjct: 92 PLTAFFRRYEEPRNAV 107 >gi|190895653|ref|YP_001985945.1| transcriptional regulator [Rhizobium etli CIAT 652] gi|190699598|gb|ACE93682.1| putative transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 231 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 34 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 93 Query: 69 PISFFFDVSPTVCSDI 84 P++ FF + + Sbjct: 94 PLTAFFRRYEEPRNAV 109 >gi|145301000|ref|YP_001143841.1| transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853772|gb|ABO92093.1| putative transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 180 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 43/92 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R++ R +SQ +L + G+T + + EK S L+ + E + ++ Sbjct: 1 MDIGHRLKAVRTKAALSQRELAKRSGVTNGFISQIEKNQVSPSVSSLRKVLEGIPMSLAS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + +++ +++ D + P +L Sbjct: 61 FFTEETEMGTEVIFRASDMPDLGTHPISYRLV 92 >gi|126726004|ref|ZP_01741846.1| hypothetical protein RB2150_07348 [Rhodobacterales bacterium HTCC2150] gi|126705208|gb|EBA04299.1| hypothetical protein RB2150_07348 [Rhodobacterales bacterium HTCC2150] Length = 148 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 46/130 (35%), Gaps = 11/130 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV +KK + + ++ R G+S +G+T + E G +V A+RL Sbjct: 1 MVDDKK-----NTAINTTLKKARERAGISMADAATHVGVTTASFSRMETGEAQVTANRLV 55 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ ++ D + + D ++L R +KI Sbjct: 56 TLATYYGLSVAGLLDGEFAKEPSSMDMKRVHAIILFVHDAIRLLRIKPSP------EKIA 109 Query: 121 ELVRSIVSSE 130 +LV I E Sbjct: 110 DLVTEIYQRE 119 >gi|94988428|ref|YP_596529.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] gi|94541936|gb|ABF31985.1| phage transcriptional repressor [Streptococcus pyogenes MGAS9429] Length = 251 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 21/131 (16%), Positives = 50/131 (38%), Gaps = 13/131 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R M+Q++L + G + +E G ++ ++ ++ L+ F Sbjct: 4 LGNSIKEIRKSKKMTQKELAKLTGFKQNTISNHENGNRQLDEVDIRKYAKALKIEPQQLF 63 Query: 75 DVSPTVCSDISSEENNVMDFI-STPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D S + + + + I ST L+ R +++ + E++ Sbjct: 64 DYSSSPTNPQVELIPSTLQKITSTSSQLEHKRQLN----------VLDYAET--QLEQQN 111 Query: 134 RTIEEECMVEQ 144 + +VE+ Sbjct: 112 TVESNKDIVEE 122 >gi|313889792|ref|ZP_07823434.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121837|gb|EFR44934.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 182 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++Q++L + +G+ ++ +Q +E G + + Q +++ + + Sbjct: 2 NRLKKLREESSLTQQELAKKIGVHYRTIQNWENGTQ-IKPEKAQMLADYFSVSVGYLLGY 60 Query: 77 SPTVCSDISSEENN 90 + +D EEN Sbjct: 61 TDYKNTDEYFEENE 74 >gi|257481782|ref|ZP_05635823.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 199 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 16 IALDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSM 75 Query: 71 SFFFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FF P + + + + ++D ++L Sbjct: 76 VEFFSEETVPENAAQVVYKASELIDISDGAVTMKLV 111 >gi|256848879|ref|ZP_05554313.1| predicted protein [Lactobacillus crispatus MV-1A-US] gi|256714418|gb|EEU29405.1| predicted protein [Lactobacillus crispatus MV-1A-US] Length = 115 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 7/115 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + I+ R ++Q +LGE L ++ Q + +E G G+ L+ +++ Sbjct: 1 MKDYDRKKLANNIKTLRKQKNLNQAELGEILHVSQQTIGSWETGRAIPGSDTLKILADYF 60 Query: 67 ESPISFFF------DVSPTVCSDISSEENNVMDFISTPDGLQLNR-YFIQIDDVK 114 + + T S++ + +L R +I + K Sbjct: 61 QVSTDELLGRKTSGSANDTDLSEMINNARFFDGKPMDDHDKELVRDILKRIYNEK 115 >gi|227522690|ref|ZP_03952739.1| hypothetical protein HMPREF0519_0399 [Lactobacillus hilgardii ATCC 8290] gi|227090138|gb|EEI25450.1| hypothetical protein HMPREF0519_0399 [Lactobacillus hilgardii ATCC 8290] Length = 103 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 32/94 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++R R G++ +L +G + + +E + L I + L + I FF Sbjct: 7 GEKLRKLRKSRGITAAELSAKMGFSQSYINHFETDRAVPNVNALGEILKYLGTDIPSFFG 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + +L + F Sbjct: 67 DELDSNKRTLLNTISQLSEEQIVLLTELLQSFSS 100 >gi|149183828|ref|ZP_01862225.1| DNA-binding protein [Bacillus sp. SG-1] gi|148848458|gb|EDL62711.1| DNA-binding protein [Bacillus sp. SG-1] Length = 123 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 2/113 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + G+ ++L R +SQE+L + ++KYE G + +S VL+ P S Sbjct: 3 HFGQNLKLLREERNISQEELAMRARLGRTTIEKYESGSQIPDTPTILKLSTVLDVPASEM 62 Query: 74 FDVS--PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + + E ++ + T + R + + + + L Sbjct: 63 LERESLESHQQGVDQEIQQLISEMGTKKAKLILRKAKEFSEEDFLRVMQMLYE 115 >gi|66043508|ref|YP_233349.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63254215|gb|AAY35311.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a] Length = 199 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 16 IALDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSM 75 Query: 71 SFFFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FF P + + + + ++D ++L Sbjct: 76 VEFFSEESVPENAAQVVYKASELIDISDGAVTMKLV 111 >gi|84516199|ref|ZP_01003559.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] gi|84509895|gb|EAQ06352.1| DNA-binding protein, putative [Loktanella vestfoldensis SKA53] Length = 207 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D +G R+R R + E+ G+ + K E G L+ ++ L+ Sbjct: 24 PLD--LGARVRELRKARDWTLEQAARQAGLARSTLSKIENGQMSPTYDALKKLAVGLDIS 81 Query: 70 ISFFFD 75 + F Sbjct: 82 VPQLFT 87 >gi|317492341|ref|ZP_07950770.1| hypothetical protein HMPREF0864_01534 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919680|gb|EFV41010.1| hypothetical protein HMPREF0864_01534 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 186 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 3/92 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +++G+ +R R G S +K + G++ + + E+G + L IS L++ Sbjct: 3 DLSLHIGQTLRDLRQQRGWSLDKTAQATGVSKAMLGQIERGESSPTVVTLWRISSGLQAS 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 S F P +D + D T L Sbjct: 63 FSEFL---PKQLTDAEPASLHHEDEAITAQTL 91 >gi|310828218|ref|YP_003960575.1| hypothetical protein ELI_2631 [Eubacterium limosum KIST612] gi|308739952|gb|ADO37612.1| hypothetical protein ELI_2631 [Eubacterium limosum KIST612] Length = 197 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 29/90 (32%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 R R +SQ L E LG++ V ++E N + ++ ++++ + V + Sbjct: 5 RQLRKERNLSQANLAERLGVSQTAVSQWETDKNYPDINTIKQLADIYSVTTDYLLGVDSS 64 Query: 80 VCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + R + Sbjct: 65 RLKKDNEIVVYTRVPAGVEWANIEERAGYE 94 >gi|238754555|ref|ZP_04615909.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473] gi|238707186|gb|EEP99549.1| Helix-turn-helix domain protein [Yersinia ruckeri ATCC 29473] Length = 166 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 32/87 (36%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 13 MKKSLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANAL 72 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMD 93 + SD D Sbjct: 73 SVEPWQLLASDSSEDSDPELLVPYAAD 99 >gi|238024352|ref|YP_002908584.1| XRE family transcriptional regulator [Burkholderia glumae BGR1] gi|237879017|gb|ACR31349.1| Transcriptional regulator, XRE family with Cupin sensor domain [Burkholderia glumae BGR1] Length = 204 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 47/127 (37%), Gaps = 2/127 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R+ G+S +L G++ V + E+ L+ + + L P+S Sbjct: 19 VGGRLRALRVEQGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALSVPLSALL 78 Query: 75 DVSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + D + + + + + +I L+ + S++ Sbjct: 79 EDEGAASDPVVGDFVRKADERPLFDVGKQGMQKELLSPPGDHDLKMMIILLPAGAGSDEV 138 Query: 133 YRTIEEE 139 + E+ Sbjct: 139 LVGVGEK 145 >gi|229062058|ref|ZP_04199383.1| Transcriptional regulator, MerR [Bacillus cereus AH603] gi|228717210|gb|EEL68885.1| Transcriptional regulator, MerR [Bacillus cereus AH603] Length = 181 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ I+ L P+ + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 I EE + ++ Sbjct: 61 LLLEQKDRLKIIKKEERKYSVYGKDEQRIEHV 92 >gi|153815957|ref|ZP_01968625.1| hypothetical protein RUMTOR_02202 [Ruminococcus torques ATCC 27756] gi|317500717|ref|ZP_07958935.1| hypothetical protein HMPREF1026_00878 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089807|ref|ZP_08338700.1| hypothetical protein HMPREF1025_02283 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846776|gb|EDK23694.1| hypothetical protein RUMTOR_02202 [Ruminococcus torques ATCC 27756] gi|316897911|gb|EFV19964.1| hypothetical protein HMPREF1026_00878 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403504|gb|EGG83062.1| hypothetical protein HMPREF1025_02283 [Lachnospiraceae bacterium 3_1_46FAA] Length = 106 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 14/113 (12%), Positives = 42/113 (37%), Gaps = 15/113 (13%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++++ R+ ++QE + + + E +V S L I L++ + + Sbjct: 8 QIGEKLKKIRLSKNLTQEYIANAADVNTSHISNIENNRVKVSLSVLVQICNALDTTVDYI 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 S +E + + +++I+++V+++ Sbjct: 68 LSDEYNDSSSAIEQEILHELHS---------------CNNETKEQILKIVKAL 105 >gi|126459405|ref|YP_001055683.1| XRE family transcriptional regulator [Pyrobaculum calidifontis JCM 11548] gi|126249126|gb|ABO08217.1| transcriptional regulator, XRE family [Pyrobaculum calidifontis JCM 11548] Length = 528 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +VG+RI R G+S +L E G++ + + E G + L I+ L Sbjct: 1 MEEYLKRSVGERIAALRRERGLSLSELAERAGVSKSTLYEIEMGRVAPSVTTLWKIANAL 60 Query: 67 ES 68 E Sbjct: 61 EV 62 >gi|159038929|ref|YP_001538182.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157917764|gb|ABV99191.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 83 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V RI + R G+S+ L LG+ +Q + E+G R I+ E P+ F Sbjct: 5 VHNRIAVLRAERGISRRDLAGALGVHYQTIGYLERGEFRPSLHLALRIAAYFEVPVEVVF 64 Query: 75 DVSPTVCSDISSEENNV 91 + P ++ Sbjct: 65 SIEPFPRIGDATAAARH 81 >gi|312868248|ref|ZP_07728448.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311095993|gb|EFQ54237.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 115 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 38/82 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G++Q + E LGI+ +E+G+ + L +S++L + + Sbjct: 5 ERLKNLRKEAGLTQVDVAEKLGISQPAYASWERGIKKPTQDNLVKLSKILYVSVDYLLGN 64 Query: 77 SPTVCSDISSEENNVMDFISTP 98 + + E+ ++ +++ Sbjct: 65 TENRQTSDVLEDIELLFRMNSK 86 >gi|307244113|ref|ZP_07526231.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492484|gb|EFM64519.1| cupin domain protein [Peptostreptococcus stomatis DSM 17678] Length = 179 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 33/76 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R ++QE+L ++ + + E + + L I E+L + + Sbjct: 1 MEIGEKLRRLRTEKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILEILGTNLRD 60 Query: 73 FFDVSPTVCSDISSEE 88 FF + ++ Sbjct: 61 FFADEVNEKVTFAEDD 76 >gi|303241397|ref|ZP_07327900.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302591006|gb|EFL60751.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 128 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 45/113 (39%), Gaps = 9/113 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N G ++++ R+ ++Q L + L ++ V +YE G + L IS I + Sbjct: 2 VNFGDKLKMLRLEKNLTQNGLAKHLNVSKANVSRYELGTRQPNFDTLISISAFFNVSIDW 61 Query: 73 F--------FDVSPTVCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVR 116 F + + +++F+ T ++ + +++V+ Sbjct: 62 LLGRSTIRNFSSVNDKPRNFEESDLEILEFLHTNSHVHEMLESMPKSKEIRVK 114 >gi|298694333|gb|ADI97555.1| probable transcriptional regulator [Staphylococcus aureus subsp. aureus ED133] Length = 179 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF S EE + D Sbjct: 61 FFKDSENEKVLYKKEEQVIYD 81 >gi|289661679|ref|ZP_06483260.1| hypothetical protein XcampvN_00915 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 116 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISFF 73 + RIR R+ +GMSQ +L + L + V +E+ L +S VL ++ Sbjct: 8 LAARIRAARIGVGMSQTELAQKLDVNRATVGHWERKNRFAPSIDHLYAMSSVLRVSPNWL 67 Query: 74 FDVSPTVC 81 F Sbjct: 68 FHGEDRPK 75 >gi|315499434|ref|YP_004088237.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB 48] gi|315417446|gb|ADU14086.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB 48] Length = 276 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Query: 2 VGNKKIP-NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + ++ +P N VD +VG R+R+RR ++ MS++ L LGIT Q++K E+G R+G L Sbjct: 1 MEDEVVPLNEVDTHVGLRLRVRRELVQMSEDWLAGHLGITSAQLRKIEEGRARIGNRELL 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFIS 96 +E L+ P +F+ + + S Sbjct: 61 LCAEALDVPERYFYMGFGQGGNAPDPTRAPRREMDS 96 >gi|225387793|ref|ZP_03757557.1| hypothetical protein CLOSTASPAR_01563 [Clostridium asparagiforme DSM 15981] gi|225046079|gb|EEG56325.1| hypothetical protein CLOSTASPAR_01563 [Clostridium asparagiforme DSM 15981] Length = 176 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 47/104 (45%), Gaps = 2/104 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK+I++ R +SQE+LG + T + +YEKG+ + A + + + + Sbjct: 2 IELGKKIKMVREYNDLSQEELGAVVQKTKSTIGRYEKGLMEIPAKVIIDLCNYYQLSLDA 61 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 F + + + ++ + ++ D QL YF + D Sbjct: 62 FVESAYYASHQQNLEKNVSLRKGMLAALDPQQLVNYFNLLPDSA 105 >gi|225388243|ref|ZP_03757967.1| hypothetical protein CLOSTASPAR_01978 [Clostridium asparagiforme DSM 15981] gi|225045711|gb|EEG55957.1| hypothetical protein CLOSTASPAR_01978 [Clostridium asparagiforme DSM 15981] Length = 116 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 45/105 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKRI++ R+ ++QE L E ++ + E G +++ + ++ L + Sbjct: 6 RAIGKRIKIARIKADLTQEALAEKASLSTTHMSNIETGNSKLSLPTIVSLANALSVSVDE 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 F S DI S+E + +++ F++ +R+ Sbjct: 66 FLCDSVIHSKDIFSQEIQDLVSDCDEYEIRMIADFVRAAKETIRK 110 >gi|551457|gb|AAB46931.1| orf1 [Methylobacterium extorquens AM1] Length = 139 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 29/73 (39%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P++ +G +IR+ R +S L GI+ + K E G + + I+ L P Sbjct: 15 PLEKALGYQIRMLRRERDLSVGDLAAAAGISQGMISKIENGTISPSLASINAIASALNVP 74 Query: 70 ISFFFDVSPTVCS 82 I+ F Sbjct: 75 ITGLFTAFEETRD 87 >gi|294617175|ref|ZP_06696830.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1679] gi|291596575|gb|EFF27813.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1679] Length = 221 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + L PI F Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPIDF 60 >gi|291556294|emb|CBL33411.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 380 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 39/97 (40%), Gaps = 1/97 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N + + +G+ ++ R+ ++QE+L + L ++ Q V ++E G + L Sbjct: 4 TEENTMLN-LGLKLGENLKKFRLQRELTQEQLADVLSVSAQAVSRWENGTTYPDITLLPT 62 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 I+ E + + + E ++ + Sbjct: 63 IASYFEITLDELMGMESWRSEEQLKELLGQLEENGSK 99 >gi|282849276|ref|ZP_06258661.1| DNA-binding protein [Veillonella parvula ATCC 17745] gi|282580980|gb|EFB86378.1| DNA-binding protein [Veillonella parvula ATCC 17745] Length = 290 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 31/87 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++R R G+SQ KL E L ++ Q + K+E G S L+ +S V + Sbjct: 5 EKLREYRTQSGLSQGKLAETLNVSRQAITKWESGNGMPDISNLKALSGVFNVSVDELLSE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQL 103 ++L Sbjct: 65 EAVKPRYPYESIVEYDIDEIKHFDIKL 91 >gi|222086392|ref|YP_002544926.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221723840|gb|ACM26996.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 200 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + VD +G RIR+ R G S +L E ++ + K E+G + A+ L +S Sbjct: 17 DSVDKRIGTRIRIERESRGWSLTELAERSAVSRAMIHKIERGDSSPTATLLGKLSGAFGL 76 Query: 69 PISFFFDVSP 78 +S + Sbjct: 77 SMSTLMARAE 86 >gi|242278893|ref|YP_002991022.1| XRE family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242121787|gb|ACS79483.1| transcriptional regulator, XRE family [Desulfovibrio salexigens DSM 2638] Length = 107 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 2/102 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + VG +IR R G++Q +LG + + + + E+G +++ L I+ L+ P+ Sbjct: 4 ISKLVGNKIRSIRKKRGLTQAQLGNESDLNDKYISEIERGSSKLTVDALNKIANGLKVPV 63 Query: 71 SFF--FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 FD + ++ + ++ S + L++ +I Sbjct: 64 KDILDFDTAQPTREELEKDLLWMIQKTSDEQIVFLHKLVSEI 105 >gi|332976057|gb|EGK12927.1| DNA-binding protein [Desmospora sp. 8437] Length = 184 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 55/128 (42%), Gaps = 8/128 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + I+ R+ G + + L E G++ + + E+G + + + L+ I++ L PI+ F Sbjct: 8 EIYQEIKRLRLEQGYTLKVLSERTGLSVSFLSQVERGSSSLAITSLKKIADALGVPITRF 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 F+ + +EE + + +++ + + L+ ++ EK+ Sbjct: 68 FEAEFNHNYLLKAEEQKPFRLEGSSAV------YTRLNGEFGGRSLEPLLVTLAPKEKQA 121 Query: 134 R--TIEEE 139 R EE Sbjct: 122 RDSHPGEE 129 >gi|325690230|gb|EGD32234.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] Length = 225 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 34/63 (53%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLTQASIYQELGISRKAYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + Sbjct: 65 TSA 67 >gi|325289460|ref|YP_004265641.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964861|gb|ADY55640.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 343 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG IR R ++QE++ + LG+T V K+E G + S L I+ +L I Sbjct: 1 MRVGNVIRKYRKDKNLTQEEMAKRLGVTAPAVNKWENGYSLPDISLLSPIARLLNISIDT 60 Query: 73 FFDVSPTVCSDISS 86 + ++ Sbjct: 61 LLSHEKELSDAEAN 74 >gi|311030669|ref|ZP_07708759.1| YazB [Bacillus sp. m3-13] Length = 71 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G SQ LG +G+T Q + EKG + +++ L+ + F + Sbjct: 4 NRVKELRARHGFSQSDLGSLVGVTRQTIGFIEKGEFSPSIALSLRLAKHLKVKVDELFWL 63 Query: 77 SPTVCSDI 84 + Sbjct: 64 EGEDEENE 71 >gi|271966668|ref|YP_003340864.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509843|gb|ACZ88121.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 201 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 5/117 (4%) Query: 7 IPNPVDINVGK---RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + N +D +G R+R R + L GI+ + + E G R L ++ Sbjct: 1 MDNDLDQALGAVGPRLRTLRRQRDTTLADLSATTGISVSTLSRLESGARRPTLELLLPLA 60 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVRQK 118 + D PT I I P + + + + R++ Sbjct: 61 RAHGVTLDELVDAPPTGDPRIHLRPVTRHGMIMLPLTRRTGGIQAYKLVIPAGSRRR 117 >gi|260437610|ref|ZP_05791426.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|292809963|gb|EFF69168.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] Length = 108 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 46/112 (41%), Gaps = 17/112 (15%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R GMSQE+L E L + YE + +S + I++ L S+ + Sbjct: 11 GTRIREMRKAAGMSQEQLAEILCTKKATISAYENDHIDIKSSIVLEIAKALNCSGSYLLE 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 D +++ +++ + ++R+ ++ ++++ Sbjct: 71 GKKAEALD-----------------VRIMDALLELKNDQMREVALKQIQALA 105 >gi|259418447|ref|ZP_05742365.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259345842|gb|EEW57686.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 133 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 52/119 (43%), Gaps = 2/119 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R GM+Q +L +G+ + +E+ ++ A++L +S +L +S+ Sbjct: 17 GDRVAAARESAGMTQGQLARRMGVKKTTLIGWEQDLSEPRANKLSMLSGLLNVSMSWLLT 76 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 SE+ D + L+ R ++ + ++ + +R +V++++ Sbjct: 77 GEGDDL-SAPSEDTLGEDMAAIARELRSLREDLR-QQAERAGRLEKTLRRLVATQESAE 133 >gi|258508090|ref|YP_003170841.1| phage-related transcriptional regulator Cro/CI family [Lactobacillus rhamnosus GG] gi|257148017|emb|CAR86990.1| Phage-related transcriptional regulator, Cro/CI family [Lactobacillus rhamnosus GG] Length = 112 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 40/113 (35%), Gaps = 11/113 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R M+Q +G+ + ++ V YEK ++ ++ F Sbjct: 5 GERLKELRNEKKMTQSDVGKIINVSKASVSLYEKNERTPDQDSIKKLASYFNVSTDFLLG 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 V+ + +D + + + I +E+++ ++ Sbjct: 65 VTD------VRSKPEQIDISDSKNDTIMTFEGRPIPPED-----LEIIKRLLR 106 >gi|241762941|ref|ZP_04761003.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] gi|241367893|gb|EER62112.1| transcriptional regulator, XRE family [Acidovorax delafieldii 2AN] Length = 81 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PV I +G IR R+ G+SQE+L I + E+G G + I+ +E Sbjct: 11 DPVLIALGAAIRRSRLARGISQEELAHRSAIDRSYMSSIERGGQNPGIVSVTRIARAMEM 70 Query: 69 PISFFFDVSP 78 ++ + Sbjct: 71 TVTELMAEAE 80 >gi|240147526|ref|ZP_04746127.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257200275|gb|EEU98559.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 238 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G RI+ RR+ L ++Q + E +G+T + +YE G + +SE L + + Sbjct: 39 IGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 98 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ + + QL + +D + ++ +++ Sbjct: 99 KGETDEYETDITDKRELQIRDAMGDILEQLPLALTKEEDAFSKDLLLLMLKQ 150 >gi|118588465|ref|ZP_01545874.1| hypothetical protein SIAM614_24327 [Stappia aggregata IAM 12614] gi|118439171|gb|EAV45803.1| hypothetical protein SIAM614_24327 [Stappia aggregata IAM 12614] Length = 479 Score = 47.9 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 3/128 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R G+SQ + + +G++ V + E V AS L I+ + +S F Sbjct: 8 GHTLRQIRSDFGLSQVEFAKKIGLSTAYVNQIENNNRPVTASVLLTINRIFGVDLSAFEQ 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F++ G Q + V + I++L ++ + R Sbjct: 68 NDLDRVVQDLQEIFADTQFLTASVGRQEVHELVS-RAPGVTKAIMDLYGALRTYHD--RE 124 Query: 136 IEEECMVE 143 E+ +V+ Sbjct: 125 ANEDDLVQ 132 >gi|325110412|ref|YP_004271480.1| cupin [Planctomyces brasiliensis DSM 5305] gi|324970680|gb|ADY61458.1| Cupin 2 conserved barrel domain protein [Planctomyces brasiliensis DSM 5305] Length = 189 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 27/69 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +RIR R G++ E++ G+T + K E L I++VL P++ Sbjct: 5 ELAQRIRAIRRERGLTLEEVASKSGLTRSWLSKVENFRVTPSLPALSQIAQVLGIPVAEL 64 Query: 74 FDVSPTVCS 82 Sbjct: 65 VRGLDETPP 73 >gi|296159506|ref|ZP_06842330.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295890214|gb|EFG70008.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 102 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 25/116 (21%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+R R+ G+SQE+LG GI + +YE+G + L I+ VL P+S+F Sbjct: 7 RLREARIRSGLSQERLGIEAGIDEMSASARMNQYERGKHVPDLGTLSRIAAVLNLPVSYF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + V +L + + ++ K ++K++EL + + Sbjct: 67 YSVEDNEA--------------------ELVQRYHRLP-EKAKKKVLELAGELAGA 101 >gi|255655753|ref|ZP_05401162.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451015|ref|ZP_06892760.1| DNA-binding protein [Clostridium difficile NAP08] gi|296879020|ref|ZP_06903017.1| DNA-binding protein [Clostridium difficile NAP07] gi|296260146|gb|EFH06996.1| DNA-binding protein [Clostridium difficile NAP08] gi|296429973|gb|EFH15823.1| DNA-binding protein [Clostridium difficile NAP07] Length = 181 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+N+G++I R +S L + +T + + E+G+ + L+ I+ L P+ Sbjct: 3 DLNLGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVPLF 62 Query: 72 FFF 74 FF Sbjct: 63 TFF 65 >gi|210618124|ref|ZP_03291909.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787] gi|210148986|gb|EEA79995.1| hypothetical protein CLONEX_04142 [Clostridium nexile DSM 1787] Length = 122 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKRI++ R+ ++QE + + +GIT Q V E G V + L I+ L ++ Sbjct: 6 KAIGKRIKIARIKKNLTQEAIADKIGITPQHVSNIETGNASVSLTTLVAIANTLTVSVND 65 Query: 73 FFDV 76 Sbjct: 66 LLCD 69 >gi|99081574|ref|YP_613728.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99037854|gb|ABF64466.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 133 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 48/116 (41%), Gaps = 2/116 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R GM+Q +L +G+ + +E+ ++ A++L +S +L +S+ Sbjct: 17 GDRVAAARESAGMTQGQLARRMGVKKSTLIGWEQDLSEPRANKLSTLSGILNVSMSWLLT 76 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 S + + + L Q + R + + +R +V++++ Sbjct: 77 GEGDELSAPNEDTLGEDMAAIARELRSLREELRQQAERAGR--LEKSLRRLVATQE 130 >gi|69245018|ref|ZP_00603176.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257879285|ref|ZP_05658938.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257881898|ref|ZP_05661551.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257890113|ref|ZP_05669766.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|258615689|ref|ZP_05713459.1| hypothetical protein EfaeD_08257 [Enterococcus faecium DO] gi|260558729|ref|ZP_05830918.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|293563230|ref|ZP_06677683.1| transcriptional regulator, putative [Enterococcus faecium E1162] gi|294622366|ref|ZP_06701395.1| transcriptional regulator, putative [Enterococcus faecium U0317] gi|314937319|ref|ZP_07844659.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314943378|ref|ZP_07850149.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314949074|ref|ZP_07852436.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|314953479|ref|ZP_07856395.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314994167|ref|ZP_07859474.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314995977|ref|ZP_07861057.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|68196019|gb|EAN10451.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257813513|gb|EEV42271.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817556|gb|EEV44884.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257826473|gb|EEV53099.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260075188|gb|EEW63501.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|291598126|gb|EFF29229.1| transcriptional regulator, putative [Enterococcus faecium U0317] gi|291604825|gb|EFF34306.1| transcriptional regulator, putative [Enterococcus faecium E1162] gi|313589853|gb|EFR68698.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313591434|gb|EFR70279.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313594512|gb|EFR73357.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313597922|gb|EFR76767.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313643270|gb|EFS07850.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|313644551|gb|EFS09131.1| helix-turn-helix protein [Enterococcus faecium TX0082] Length = 270 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 11 VDI-NVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D VG RIR R L +S EK G+ + + V +E+G+N L I+E+ Sbjct: 3 IDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEIGHV 62 Query: 69 PISFFFDVSPT 79 + Sbjct: 63 TNEYLLYGDQE 73 >gi|326943618|gb|AEA19511.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar chinensis CT-43] Length = 131 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ +R R + G+S KLG LG+T + +E G ++ I+ + F+ Sbjct: 7 GQNLRNLRTLKGISLHKLGIELGVTGSAISSWELGNKEPNFDMVKKIAIYFLVSTDYLFN 66 >gi|317130604|ref|YP_004096886.1| XRE family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475552|gb|ADU32155.1| transcriptional regulator, XRE family [Bacillus cellulosilyticus DSM 2522] Length = 70 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G SQ +L + +G+T Q + EKG + +++ L+ + F + Sbjct: 4 NRVKELRARHGFSQTELAQRVGVTRQTIGFIEKGDFSPSIALSLRLAKHLDVRVDELFWL 63 Query: 77 SPTVCSD 83 + Sbjct: 64 DEEDIDE 70 >gi|262283491|ref|ZP_06061257.1| transcriptional regulator, PlcR [Streptococcus sp. 2_1_36FAA] gi|262260982|gb|EEY79682.1| transcriptional regulator, PlcR [Streptococcus sp. 2_1_36FAA] Length = 288 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 46/101 (45%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R++ RR L +SQ++L + + Q+ + E G G+ L +++ L+ + +FF Sbjct: 5 LASRLKQRRKELKLSQKELADGI-CKQGQISRLENGEYTPGSDLLHELAKRLKVSMDYFF 63 Query: 75 DVS-PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 D + + + N+ + RY ++++ K Sbjct: 64 DEENNSSRNSELLDFKNLSKKFIHYRNYESLRYIYELENAK 104 >gi|253566069|ref|ZP_04843523.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251945173|gb|EES85611.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 117 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 8/122 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ +G+ ++ R + G +QE++ + + I YE G + + L+ IS + Sbjct: 4 VNQIIGENLKKIRELSGFTQEQVAQSIKIERSTYSNYEGGTREIPYTILEDISNLFGCEP 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F+ + ++I + + + L+ F I ++ + I +E Sbjct: 64 FILFEDNIQTNNEIMATAFRISNLGEND--LKEIAAFKDIVKSYLK------MERIAQNE 115 Query: 131 KK 132 + Sbjct: 116 AE 117 >gi|239631283|ref|ZP_04674314.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525748|gb|EEQ64749.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 112 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 40/113 (35%), Gaps = 11/113 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R M+Q +G+ + ++ V YEK ++ ++ F Sbjct: 5 GERLKELRNEKKMTQSDVGKIINVSKASVSLYEKNERTPDQDSIKKLARYFNVSTDFLLG 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 V+ + +D + + + I +E+++ ++ Sbjct: 65 VTD------IRSKPEQIDISDSKNDTIMTFEGRPIPPED-----LEIIKRLLR 106 >gi|225378570|ref|ZP_03755791.1| hypothetical protein ROSEINA2194_04238 [Roseburia inulinivorans DSM 16841] gi|225209584|gb|EEG91938.1| hypothetical protein ROSEINA2194_04238 [Roseburia inulinivorans DSM 16841] Length = 150 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 33/77 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R ++QE+L E L ++ Q + K+E G ++ +S+V + + + Sbjct: 5 EKLITLRKSRELTQEQLAEQLNVSRQSISKWESGQVIPEVEKIVELSKVFDVTVDYLLKP 64 Query: 77 SPTVCSDISSEENNVMD 93 S + +E Sbjct: 65 SEIDELSVKTEILEQQQ 81 >gi|167834922|ref|ZP_02461805.1| hypothetical protein Bpse38_00430 [Burkholderia thailandensis MSMB43] Length = 131 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 15/109 (13%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ + R G++Q++L + + QV +YE G +R ++ ++ L Sbjct: 6 RLAMLRKQRGLTQQQLADRAKVHLVQVNRYEAGASRPAVDVVKRLAVALSVSADALLFDE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 D L+L ++I + + + ++ ++ Sbjct: 66 DEYGPDED---------------LRLLFDGLRILTDQEKNVVKSVLEAM 99 >gi|158336889|ref|YP_001518064.1| hypothetical protein AM1_3757 [Acaryochloris marina MBIC11017] gi|158307130|gb|ABW28747.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 116 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 2/98 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R LG+SQ ++ + L I+ +Q E G + L ++ + I + Sbjct: 21 IGRRMKQLRAHLGLSQVQIAKNLSISVRQWSGCECGDYLLNIDFLILLNTYYQVSIDWLL 80 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + D +SE S +L +++D Sbjct: 81 TGKGNMFMDDTSETEQK--ITSQELAEELKVLITRLED 116 >gi|16798819|ref|NP_463497.1| putative repressor protein [Listeria phage A118] gi|254825098|ref|ZP_05230099.1| phage protein [Listeria monocytogenes FSL J1-194] gi|254901046|ref|ZP_05260970.1| hypothetical protein LmonJ_14568 [Listeria monocytogenes J0161] gi|254914004|ref|ZP_05264016.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254933700|ref|ZP_05267059.1| phage protein [Listeria monocytogenes HPB2262] gi|5823634|emb|CAB53822.1| putative repressor protein [Listeria phage A118] gi|293585264|gb|EFF97296.1| phage protein [Listeria monocytogenes HPB2262] gi|293592021|gb|EFG00356.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|293594341|gb|EFG02102.1| phage protein [Listeria monocytogenes FSL J1-194] gi|332310432|gb|EGJ23527.1| Cro/CI family transcriptional regulator [Listeria monocytogenes str. Scott A] Length = 101 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 36/97 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I R G+SQ +L + L ++ + +E + + +++ + Sbjct: 1 MTIGKKISELRNKRGISQIQLAKDLNVSTSTIGMWETDKRAIKDELIVQLADYFNVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 SD+ + + ++ FI+ Sbjct: 61 LLGREKFDNSDLLAAHIDNDLTEEERIEIEKYLKFIR 97 >gi|325846936|ref|ZP_08169793.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481178|gb|EGC84222.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 241 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 42/98 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ + +R M+Q+ + E L ++ Q V K+E+G + S L ++++L+ + + Sbjct: 10 GEFVCKKRKEKNMTQKDIAEKLYVSVQAVSKWERGKSLPDISLLMPLAKILDVKLVNLLE 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 D EN + + ++ + +I Sbjct: 70 SKEEKAEDSQKIENLLEKIVEINKEDEIYKRKEKIKRA 107 >gi|295093301|emb|CBK82392.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 255 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 10/133 (7%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R G+SQ+ L E + +T Q V ++E G L+ +S+ L+ I+ Sbjct: 7 ILELRTKRGLSQDDLAEKVMVTRQAVSRWENGETVPNTDTLKLLSKELDVSINTLLGTPR 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK------VRQKIIEL-VRSIVSS-- 129 + + + LN + + +I++ V+++V Sbjct: 67 KLICQCCGMPIEDDNIMGRDSDGSLNEDYCKWCYADGTYTYSNMDDLIDVCVKNMVGENF 126 Query: 130 -EKKYRTIEEECM 141 E++ R +E + Sbjct: 127 SEEQAREYLKEML 139 >gi|270261649|ref|ZP_06189922.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13] gi|270045133|gb|EFA18224.1| XRE family transcriptional regulator [Serratia odorifera 4Rx13] Length = 187 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 35/95 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ + ++ R G S + E G++ + + E+G + + L I+ S F Sbjct: 7 HLAQTLKSLRAQRGWSLAQAAENTGVSKAMLGQIERGESSPTVATLWKIATGFNVAFSAF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 ++SP + F +++ F Sbjct: 67 LEISPLQEQATLHRYGDAPVFNQYNADMRVVPLFP 101 >gi|227511236|ref|ZP_03941285.1| possible DNA-binding protein [Lactobacillus buchneri ATCC 11577] gi|227085531|gb|EEI20843.1| possible DNA-binding protein [Lactobacillus buchneri ATCC 11577] Length = 171 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R+ G SQ+K+ + L +T Q + +E G +R L +S+V + P+ F + Sbjct: 7 QLKKARIKKGYSQQKVADELQVTRQSISSWENGHSRPDLYNLTLLSKVYDEPLDNFVKDN 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQL 103 + I S+ + F + +L Sbjct: 67 HSFDLQIESDREEFLRFFNLLQQKEL 92 >gi|213970668|ref|ZP_03398793.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|213924502|gb|EEB58072.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] Length = 198 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 15 IALDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSM 74 Query: 71 SFFFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FF P + + + + ++D ++L Sbjct: 75 VEFFSEETVPENSAQVVYKASELIDISDGAVTMKLV 110 >gi|167578709|ref|ZP_02371583.1| transcriptional regulator, Cro/CI family, putative [Burkholderia thailandensis TXDOH] gi|167616842|ref|ZP_02385473.1| transcriptional regulator, Cro/CI family, putative [Burkholderia thailandensis Bt4] gi|257140768|ref|ZP_05589030.1| Cro/CI family transcriptional regulator putative [Burkholderia thailandensis E264] Length = 183 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V R+R RM G+SQ +L + G+T + E+ L+ + E + ++ F Sbjct: 4 EVATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQSRVSPSVGSLKKLLECIPMSLAEF 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + S + + + + G L Sbjct: 64 FTFEVDENRSVVSRRDEMPNLGNETIGFYLA 94 >gi|104783607|ref|YP_610105.1| hypothetical protein PSEEN4650 [Pseudomonas entomophila L48] gi|95112594|emb|CAK17322.1| conserved hypothetical protein; putative DNA-binding [Pseudomonas entomophila L48] Length = 360 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 32/61 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ R G+S + LG+ +G++ ++KYE + + L + + L +F Sbjct: 1 MIGERLKRARAAAGLSMQALGDQVGVSANMIKKYEHDQSMPSSGVLVRLCKALSVRAEYF 60 Query: 74 F 74 F Sbjct: 61 F 61 >gi|51894099|ref|YP_076790.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863] gi|51857788|dbj|BAD41946.1| transcriptional regulator [Symbiobacterium thermophilum IAM 14863] Length = 196 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 4/128 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RIR R G++ ++L E G++ + + E L +S L P++ Sbjct: 8 MSLGHRIRQTRTQKGITLQELAERSGLSKGFLCQLENDKASPSLQALDRLSAGLGVPVAL 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + +QL ++ ++EL + Sbjct: 68 LLISQEERAHVVRANARQGYSMNGEGLSVQLLSA----PGRSLKMMLLELAPGAATGGDN 123 Query: 133 YRTIEEEC 140 + EEC Sbjct: 124 HVHEGEEC 131 >gi|16519699|ref|NP_443819.1| uncharacterized transcription regulator, XRE family [Sinorhizobium fredii NGR234] gi|2495432|sp|P55409|Y4DJ_RHISN RecName: Full=Uncharacterized HTH-type transcriptional regulator y4dJ gi|7465604|pir||T02773 y4dJ protein - Rhizobium sp. plasmid pNGR234a gi|2182353|gb|AAB91639.1| uncharacterized transcription regulator, XRE family [Sinorhizobium fredii NGR234] Length = 77 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 23/70 (32%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R G++QE++ G + Q + E+G L +++ L Sbjct: 7 VGSNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALGVSHVELV 66 Query: 75 DVSPTVCSDI 84 + Sbjct: 67 TPTDETPFGT 76 >gi|121634808|ref|YP_975053.1| putative phage repressor [Neisseria meningitidis FAM18] gi|218768099|ref|YP_002342611.1| putative phage repressor [Neisseria meningitidis Z2491] gi|120866514|emb|CAM10264.1| putative phage repressor [Neisseria meningitidis FAM18] gi|121052107|emb|CAM08421.1| putative phage repressor [Neisseria meningitidis Z2491] gi|254672493|emb|CBA05983.1| transcriptional regulator, Cro/CI family [Neisseria meningitidis alpha275] gi|261392641|emb|CAX50205.1| putative DNA-binding phage protein [Neisseria meningitidis 8013] gi|308389194|gb|ADO31514.1| putative phage repressor [Neisseria meningitidis alpha710] gi|319410341|emb|CBY90689.1| putative DNA-binding phage protein [Neisseria meningitidis WUE 2594] gi|325132108|gb|EGC54804.1| phage repressor [Neisseria meningitidis M6190] gi|325136414|gb|EGC59022.1| phage repressor [Neisseria meningitidis M0579] gi|325138041|gb|EGC60614.1| hypothetical protein NMBES14902_1229 [Neisseria meningitidis ES14902] gi|325142304|gb|EGC64718.1| hypothetical protein NMB9615945_1127 [Neisseria meningitidis 961-5945] gi|325198242|gb|ADY93698.1| hypothetical protein NMBG2136_0985 [Neisseria meningitidis G2136] gi|325204082|gb|ADY99535.1| hypothetical protein NMBM01240355_1010 [Neisseria meningitidis M01-240355] Length = 125 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 13/120 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ +R LG++Q + E GI + KYE+GV L + +S F Sbjct: 8 GNRLKEKRKFLGLTQAQAAEKAGIERETWGKYERGVFMPSGDVLLSFLN-MGIDVSSLFA 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + +SE + + +L Y+ Q D + I+ + + +EKK Sbjct: 67 AEQGIRPSENSEI--------SKEESELLGYYRQASD-NGKFVILSVAK---GAEKKAAE 114 >gi|15925695|ref|NP_373229.1| hypothetical protein SAV2705 [Staphylococcus aureus subsp. aureus Mu50] gi|15928290|ref|NP_375823.1| hypothetical protein SA2495 [Staphylococcus aureus subsp. aureus N315] gi|148269137|ref|YP_001248080.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150395219|ref|YP_001317894.1| hypothetical protein SaurJH1_2785 [Staphylococcus aureus subsp. aureus JH1] gi|156981020|ref|YP_001443279.1| hypothetical protein SAHV_2689 [Staphylococcus aureus subsp. aureus Mu3] gi|253316707|ref|ZP_04839920.1| hypothetical protein SauraC_11280 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255007477|ref|ZP_05146078.2| hypothetical protein SauraM_13430 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793530|ref|ZP_05642509.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258411164|ref|ZP_05681443.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258420931|ref|ZP_05683865.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A9719] gi|258438571|ref|ZP_05689794.1| transcriptional regulator [Staphylococcus aureus A9299] gi|258443973|ref|ZP_05692311.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258446210|ref|ZP_05694370.1| transcriptional regulator [Staphylococcus aureus A6300] gi|258449131|ref|ZP_05697237.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258454391|ref|ZP_05702359.1| transcriptional regulator [Staphylococcus aureus A5937] gi|269204343|ref|YP_003283612.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ED98] gi|282894270|ref|ZP_06302500.1| hypothetical protein SGAG_01620 [Staphylococcus aureus A8117] gi|282927741|ref|ZP_06335355.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|295406854|ref|ZP_06816658.1| hypothetical protein SMAG_02027 [Staphylococcus aureus A8819] gi|297245889|ref|ZP_06929751.1| hypothetical protein SLAG_01983 [Staphylococcus aureus A8796] gi|13702662|dbj|BAB43802.1| SA2495 [Staphylococcus aureus subsp. aureus N315] gi|14248480|dbj|BAB58867.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|147742206|gb|ABQ50504.1| transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus JH9] gi|149947671|gb|ABR53607.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|156723155|dbj|BAF79572.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257787502|gb|EEV25842.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257840049|gb|EEV64514.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257843121|gb|EEV67536.1| helix-turn-helix domain-containing protein [Staphylococcus aureus A9719] gi|257848130|gb|EEV72122.1| transcriptional regulator [Staphylococcus aureus A9299] gi|257850857|gb|EEV74801.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257855036|gb|EEV77979.1| transcriptional regulator [Staphylococcus aureus A6300] gi|257857564|gb|EEV80459.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257863485|gb|EEV86245.1| transcriptional regulator [Staphylococcus aureus A5937] gi|262076633|gb|ACY12606.1| transcriptional regulator, Cro/CI family [Staphylococcus aureus subsp. aureus ED98] gi|282590501|gb|EFB95579.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282763315|gb|EFC03445.1| hypothetical protein SGAG_01620 [Staphylococcus aureus A8117] gi|285818368|gb|ADC38855.1| Transcriptional regulator [Staphylococcus aureus 04-02981] gi|294968319|gb|EFG44344.1| hypothetical protein SMAG_02027 [Staphylococcus aureus A8819] gi|297177254|gb|EFH36507.1| hypothetical protein SLAG_01983 [Staphylococcus aureus A8796] gi|312831044|emb|CBX35886.1| helix-turn-helix family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129534|gb|EFT85526.1| hypothetical protein CGSSa03_11146 [Staphylococcus aureus subsp. aureus CGS03] gi|329725645|gb|EGG62124.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21172] Length = 189 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E L ++ Q + +E + L + E+ + Sbjct: 1 MNLSKQIKKYRERDGYSQEYLAEKLYVSRQSISNWENDKSLPDIHNLLMMCELFNVTLDD 60 Query: 73 FFDVSPTVCSDI 84 + DI Sbjct: 61 LVKGTIPFVPDI 72 >gi|325917919|ref|ZP_08180091.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325535865|gb|EGD07689.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 66 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G SQ +L E LG++ Q + E G I+ + PI F Sbjct: 3 SRVRELRESNGWSQGELAEQLGVSRQTINALETGKYDPSLPLAFRIARLFGEPIEQVF 60 >gi|319440538|ref|ZP_07989694.1| putative DNA-binding protein [Corynebacterium variabile DSM 44702] Length = 221 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 2/108 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +++ +G R+R R GMS L E G++ + K E + + H++ L+ Sbjct: 22 HSIEVGLGHRVRALRTSRGMSVAALSERAGLSKAMLSKIENAQTSCSLTSVAHLAAALDV 81 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 P++ F S + + G + N + + + R Sbjct: 82 PVATLFQDS--SVERPVAYTPAGKGTLIDGRGTRHNHIYELLGSFRGR 127 >gi|312864376|ref|ZP_07724609.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311100097|gb|EFQ58308.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 135 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 33/70 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++++ R++ ++QE++ + LG++ Q V +E+G L +S + + Sbjct: 2 MAVGQQLQSARLLSDLTQEEVADSLGVSRQTVSNWERGKTYPDIVSLIALSNLYHLSLDQ 61 Query: 73 FFDVSPTVCS 82 + Sbjct: 62 LVKGDEAMVK 71 >gi|303238807|ref|ZP_07325339.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302593686|gb|EFL63402.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 194 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R GM+Q++L + + I+ + + K+E+G+ S L +S +L I Sbjct: 7 GNLICSLRKEKGMTQKQLADTMNISDKTISKWERGLGCPDVSLLPELSALLGVNIEKILS 66 Query: 76 VS 77 Sbjct: 67 GD 68 >gi|302561948|ref|ZP_07314290.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus Tu4000] gi|302479566|gb|EFL42659.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus Tu4000] Length = 191 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V VG R+R R ++ L E GI+ + + E G+ + L I++ Sbjct: 2 TTDDVLAEVGPRLRRIRKEREVTLAALSEATGISVSTLSRLESGLRKPSLELLLPIAQAH 61 Query: 67 ESPISFFFDVSPTVCSDISSEEN 89 + P+ P I + E Sbjct: 62 QVPLDELVGAPPVGDPRIRASEP 84 >gi|317050695|ref|YP_004111811.1| helix-turn-helix domain-containing protein [Desulfurispirillum indicum S5] gi|316945779|gb|ADU65255.1| helix-turn-helix domain protein [Desulfurispirillum indicum S5] Length = 224 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R +LG++Q + +G + V + E+G G L+ I E L + I++ Sbjct: 4 QRLRELRKMLGLTQGEFAFHVGTSPGYVSEAEQGKKVPGGEILRRICEKLNANINWLLTG 63 Query: 77 SPTV 80 S + Sbjct: 64 SGDM 67 >gi|270262620|ref|ZP_06190891.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043304|gb|EFA16397.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 462 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 1/90 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K+ N ++ +G RIR+ R S L E G++ V K E+G + A L +S Sbjct: 275 NNKLDN-INQRIGARIRIEREARHWSLSDLAERAGVSRAMVHKIERGDSSPTAMLLARLS 333 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMD 93 +S + T + E+ + Sbjct: 334 GAFGLSMSKLIARAETQEGRLLRREDQPVW 363 >gi|268610105|ref|ZP_06143832.1| putative regulatory protein [Ruminococcus flavefaciens FD-1] gi|325679993|ref|ZP_08159562.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108431|gb|EGC02678.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 126 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 15/124 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ R M Q L E I+ + E G + I+ L++ + Sbjct: 8 IGKRIKEVRTARKMPQMLLAEKCDISDSYLSYIECGRKTPSLEVIIRIARELDTTVDSLL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + +E + M +P ++ + E++ S+ + ++ R Sbjct: 68 EGNQNTDTGTYEKEISEMMNDCSPY---------------EKRVLYEMLHSMKVTIRQNR 112 Query: 135 TIEE 138 T+ E Sbjct: 113 TLIE 116 >gi|261208781|ref|ZP_05923218.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289565534|ref|ZP_06445981.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|294614441|ref|ZP_06694357.1| helix-turn-helix domain protein [Enterococcus faecium E1636] gi|294617957|ref|ZP_06697562.1| helix-turn-helix domain protein [Enterococcus faecium E1679] gi|260077283|gb|EEW65003.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289162616|gb|EFD10469.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|291592749|gb|EFF24342.1| helix-turn-helix domain protein [Enterococcus faecium E1636] gi|291595766|gb|EFF27054.1| helix-turn-helix domain protein [Enterococcus faecium E1679] Length = 270 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 11 VDI-NVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D VG RIR R L +S EK G+ + + V +E+G+N L I+E+ Sbjct: 3 IDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEIGHV 62 Query: 69 PISFFFDVSPT 79 + Sbjct: 63 TNEYLLYGDQE 73 >gi|229162203|ref|ZP_04290172.1| hypothetical protein bcere0009_29800 [Bacillus cereus R309803] gi|228621253|gb|EEK78110.1| hypothetical protein bcere0009_29800 [Bacillus cereus R309803] Length = 374 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + K I +R G++QE+LG +GIT V K+E G + + L ++ I Sbjct: 4 IQIHKIIADKRKEKGITQEELGAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP--------DGLQLNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + ++ + + + ++ ++ + Sbjct: 64 LISYTPQMEQEDIKNLYHRLAEAFSEEPFDKVMIECREMIKKYYSCFPLLLQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K I EE M Sbjct: 124 HMLTEDTDKRIEILEEAM 141 >gi|218185799|gb|EEC68226.1| hypothetical protein OsI_36225 [Oryza sativa Indica Group] Length = 200 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 30/81 (37%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M V + V RIR R +S ++L ++ + + EKG + L Sbjct: 8 MTEQGADVAQVSLAVANRIRSWRKDKKLSLDELSRRASVSKGMLVEIEKGAANPSIAILC 67 Query: 61 HISEVLESPISFFFDVSPTVC 81 ++ L ++ +VS Sbjct: 68 KLAAALGVSVADIVNVSSEPV 88 >gi|197287327|ref|YP_002153199.1| transcriptional regulator [Proteus mirabilis HI4320] gi|227356988|ref|ZP_03841360.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|194684814|emb|CAR46896.1| putative transcriptional regulator [Proteus mirabilis HI4320] gi|227162866|gb|EEI47825.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 192 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 36/94 (38%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N + P + +G +++ R +S +L GI+ + K E G + L+ I+ Sbjct: 2 NPQSPKKTNEYLGNKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSNPRIDTLEAIA 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 L P+ F + + + V D+ Sbjct: 62 IALGFPLGDLFSFTREEYPRLERHKPIVGDYAQE 95 >gi|254381609|ref|ZP_04996973.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194340518|gb|EDX21484.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 231 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 9/82 (10%) Query: 1 MVGNKKIP--NPVDI-------NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 M K P NP D+ ++G+RI RR LG+S+E+LG G + E+ Sbjct: 1 MSAMKSTPSTNPQDVSETAGRTDLGRRIAARRTALGLSREELGRKCGADGNYIAYLEEHA 60 Query: 52 NRVGASRLQHISEVLESPISFF 73 L +++ L + Sbjct: 61 ASPAIGTLVRMADALGVTVDDL 82 >gi|48697282|ref|YP_025049.1| putative repressor protein [Lactobacillus phage phiAT3] gi|47607173|gb|AAT36509.1| putative repressor protein [Lactobacillus phage phiAT3] Length = 257 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 3/114 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +NVG+R++ R G+S + L +G++ V +YEKG V + ++ L Sbjct: 1 MNVGERMKTIRKQKGISADSLAAKIGVSRSTVFRYEKGDIEKVPIEVVAKVANALNIKPE 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + D + + Q+++ + R ++ L + Sbjct: 61 VLMGLKADTVVDKIHDTVVQLHPERQQKVYTYAE--KQLNEQQNRDNVVSLDEA 112 >gi|21244773|ref|NP_644355.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21110470|gb|AAM38891.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 66 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G SQ +LGE LG++ Q + E G I+ + I F Sbjct: 3 SRVRELREANGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 >gi|85711642|ref|ZP_01042699.1| DNA-binding protein [Idiomarina baltica OS145] gi|85694502|gb|EAQ32443.1| DNA-binding protein [Idiomarina baltica OS145] Length = 63 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R +Q L + L ++ Q + E G I++V + I F Sbjct: 3 NRLKVLRAERNWTQNDLAQALSVSRQTINAIETGKFDPSLPLAFKIAKVFQCTIEDVFSD 62 Query: 77 S 77 Sbjct: 63 D 63 >gi|326405603|gb|ADZ62674.1| transcriptional regulator [Lactococcus lactis subsp. lactis CV56] Length = 185 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 31/68 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ ++ R+ ++QE++ + L + Q + ++E L ++E+ ES +S F Sbjct: 1 MLGENLQKARLAQKLTQEEVAKELYFSRQAISRWESNKAEPNFETLIALAELYESDLSAF 60 Query: 74 FDVSPTVC 81 Sbjct: 61 AQGIEPQK 68 >gi|307308409|ref|ZP_07588113.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|306901012|gb|EFN31620.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 470 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 9/136 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NK I G R+R R L ++Q + E LGI+ + E+ + L Sbjct: 1 MAENK-------IFAGPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLL 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ V + + + + + + + + P +L V I+ Sbjct: 54 KLASVYKVDLEELQGEAGSGLAQLREVFADPLLAGELPGDQELVEVAEAA--PNVSGGIV 111 Query: 121 ELVRSIVSSEKKYRTI 136 +L R+ + R + Sbjct: 112 KLYRAYREQASRLRDL 127 >gi|293567401|ref|ZP_06678750.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1071] gi|291589918|gb|EFF21717.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1071] Length = 221 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++IR R ++Q++LGE +G++ + + +E L + L PI F Sbjct: 1 MNIGEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPIDF 60 >gi|269120018|ref|YP_003308195.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268613896|gb|ACZ08264.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 108 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 40/84 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R ++Q++L + +G V KYE G V + L ISE+L++P+S FF Sbjct: 5 IGSNIKNYRKTNKLTQQELADKIGKHKITVAKYESGKISVPMAVLHEISEILDTPMSDFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 +P + +E I Sbjct: 65 KENPISIDNFEPKEKYREFHIIER 88 >gi|271969128|ref|YP_003343324.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270512303|gb|ACZ90581.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 199 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + VG R++ R G+S L E GI+ + + E G R L Sbjct: 1 MDEQSPIAATLAQVGSRLKRIRTQRGISLSALAEATGISKSTLSRLETGQRRPSLELLLP 60 Query: 62 ISEVLESPISFF 73 I++ + P+ Sbjct: 61 IAQAHQVPLDEL 72 >gi|227886016|ref|ZP_04003821.1| XRE family transcriptional regulator [Escherichia coli 83972] gi|227836945|gb|EEJ47411.1| XRE family transcriptional regulator [Escherichia coli 83972] Length = 138 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R L ++Q+ L + +G+ + +EK A +L +SE + I + Sbjct: 27 MIGLRIKEERERLSLTQQGLADAIGVAKRTFIDWEKDRTSPTAVQLSALSE-IGVDILYV 85 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + + +L F ++ + R+ I+E+ + + + Sbjct: 86 VTGVRSQPVVA---------PYVSQEKKELMDAFDEM-SPEQRRAILEVGKVFIQPKPSK 135 Query: 134 RT 135 Sbjct: 136 LA 137 >gi|52079830|ref|YP_078621.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52785200|ref|YP_091029.1| YqaE [Bacillus licheniformis ATCC 14580] gi|52003041|gb|AAU22983.1| probable transcriptional regulator (phage-related) [Bacillus licheniformis ATCC 14580] gi|52347702|gb|AAU40336.1| YqaE [Bacillus licheniformis ATCC 14580] Length = 122 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Query: 13 INVGKRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + G R+R R + +SQ+KLGE LG+ + YE+ L I++ + I Sbjct: 1 MKFGDRLRELRKMRPNLSQKKLGEHLGLAESTISMYEQNRREPEYEILIKIADYFDVSID 60 Query: 72 FFFDVSPTVCSDISSEENN 90 + + D E+ Sbjct: 61 YLLRGTDPKVQDKIFEDEA 79 >gi|82750708|ref|YP_416449.1| transcriptional regulator [Staphylococcus aureus RF122] gi|82656239|emb|CAI80652.1| probable transcriptional regulator [Staphylococcus aureus RF122] Length = 179 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 35/81 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R I ++QE+L + ++ + + E +I EVL + S Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAKRTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF S EE + D Sbjct: 61 FFKDSENENVLYKKEEQVIYD 81 >gi|332291093|ref|YP_004429702.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169179|gb|AEE18434.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 251 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 5/96 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IR R + +SQ+ E + + YE+G + + I+ PI Sbjct: 5 GKNIRKIRTVKTLSQQSFAELFDLKRGTLGAYEEGRSEPKIDTIIKIANYFSIPIDDLL- 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + ++T + + F I Sbjct: 64 ----TKELTVNSLLKFKANLTTDHDIITKQAFASIP 95 >gi|295402356|ref|ZP_06812311.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294975629|gb|EFG51252.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 206 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +GK I R + G+S E+LG +G+T + +++YE G R+ R+ I++ L+ Sbjct: 2 NDFYKIIGKNIEKYRKLKGISAEELGNRVGLTKKTIRRYETGEIRIINDRVLAIADALDI 61 Query: 69 PISFFFDVSP 78 + ++ + Sbjct: 62 DPADLYEGTD 71 >gi|253699444|ref|YP_003020633.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251774294|gb|ACT16875.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 106 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 42/87 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R +SQE+L E +GI + + + E G + RL+ I+ L + FF Sbjct: 8 LGARIKELRKGRKLSQEELAELIGIEPRHMSRIEVGKSYPSLDRLERIAMALNVDLRDFF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 D + ++ ++ N + T + L Sbjct: 68 DFAHLEARPVNVDQINDILKEMTDEDL 94 >gi|160933444|ref|ZP_02080832.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753] gi|156867321|gb|EDO60693.1| hypothetical protein CLOLEP_02290 [Clostridium leptum DSM 753] Length = 169 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQ++L L + Q + K+E+G++ + L ISEVLE+P+S Sbjct: 4 ENIKAIRKSKGLSQQELAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETPVSTLLGE 63 Query: 77 S 77 + Sbjct: 64 A 64 >gi|149201279|ref|ZP_01878254.1| transcriptional regulator, XRE family with cupin sensor domain [Roseovarius sp. TM1035] gi|149145612|gb|EDM33638.1| transcriptional regulator, XRE family with cupin sensor domain [Roseovarius sp. TM1035] Length = 209 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 34/94 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR RR ++ M+ + L G++ + + E+ L I+ L+ I Sbjct: 12 LALGRRIRKRRQLMSMTLQDLSNGCGVSVSYLSQIERDNAVPTLGTLAEIAAALDVSIDH 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 F S +E T + Sbjct: 72 FIATPRQADSVTRAETRPQFSISGTSIIYEQIGA 105 >gi|146342719|ref|YP_001207767.1| transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146195525|emb|CAL79550.1| putative transcriptional regulator with a putative HTH DNA-binding domain [Bradyrhizobium sp. ORS278] Length = 225 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 1/82 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P ++ +G +R R L ++ +LG GI+ + K E G + L Sbjct: 29 MAPKEATPT-LETEIGAEVRRLRKDLDLTVAELGAAAGISAGMMSKIENGSISPSLATLS 87 Query: 61 HISEVLESPISFFFDVSPTVCS 82 +++ L PI+ F + Sbjct: 88 ALAKALNVPIARLFRENGEERD 109 >gi|14141827|ref|NP_115293.1| hypothetical protein SAVP004 [Staphylococcus aureus subsp. aureus Mu50] gi|228475859|ref|ZP_04060571.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] gi|14020888|dbj|BAB47512.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|228270091|gb|EEK11556.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] Length = 137 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G +I+ R MSQEKL E LG++ + +E+ V+ + I+++ + Sbjct: 1 METKIGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSNPDLKTILEITKLFNVSL 60 Query: 71 SFFFDVSP 78 + Sbjct: 61 NQLIKGVE 68 >gi|15964466|ref|NP_384819.1| hypothetical protein SMc00769 [Sinorhizobium meliloti 1021] gi|15073643|emb|CAC45285.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] Length = 470 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 9/136 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NK I G R+R R L ++Q + E LGI+ + E+ + L Sbjct: 1 MAENK-------IFAGPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLL 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ V + + + + + + + + P +L V I+ Sbjct: 54 KLASVYKVDLEELQGEAGSGLAQLREVFADPLLAGELPGDQELVEVAEAA--PNVSGGIV 111 Query: 121 ELVRSIVSSEKKYRTI 136 +L R+ + R + Sbjct: 112 KLYRAYREQASRLRDL 127 >gi|134298751|ref|YP_001112247.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051451|gb|ABO49422.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 218 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI+ R G+S +L G+ + E G + ++ I L ++ Sbjct: 1 MDIGSRIKKLRTYQGLSMNELSRRSGVAQSHLSYVESGQRQPTFDVIERICSGLGLSVAE 60 Query: 73 FFDV 76 FF+ Sbjct: 61 FFNE 64 >gi|333004623|gb|EGK24147.1| helix-turn-helix family protein [Shigella flexneri VA-6] Length = 185 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 18/146 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P GKR+ R G+SQ + E G+T + E+ S LQ Sbjct: 1 MSDEGLAP-------GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQ 53 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + +V +S FF + + ++++++ S ++L ++ + I Sbjct: 54 KLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLV---HNVNPNRTLAMI 110 Query: 120 IELV-------RSIVSSEKKYRTIEE 138 E I ++ T+ E Sbjct: 111 FETYQPGTTTGERIKHQGEEIGTVLE 136 >gi|325103942|ref|YP_004273596.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] gi|324972790|gb|ADY51774.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] Length = 257 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R G++Q++ + + I V YE+ L+ I+E E I F Sbjct: 4 ISDNLKYLRKKKGLTQQQFADVMEIKRSLVGAYEEDRAEPKYDLLKKIAEYFEISIDDFI 63 Query: 75 DV 76 + Sbjct: 64 NE 65 >gi|256852137|ref|ZP_05557524.1| predicted protein [Lactobacillus jensenii 27-2-CHN] gi|260661294|ref|ZP_05862207.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|282931547|ref|ZP_06337045.1| DNA-binding protein [Lactobacillus jensenii 208-1] gi|256615549|gb|EEU20739.1| predicted protein [Lactobacillus jensenii 27-2-CHN] gi|260547749|gb|EEX23726.1| predicted protein [Lactobacillus jensenii 115-3-CHN] gi|281304321|gb|EFA96425.1| DNA-binding protein [Lactobacillus jensenii 208-1] Length = 136 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 33/70 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R +SQE++ L I+ Q + K+E G + +L +S++ + + Sbjct: 6 ERLKNLREANNLSQEEVASRLKISRQSISKWELGDSIPDIEKLTELSKIYGVSLDYLVGN 65 Query: 77 SPTVCSDISS 86 S + I+ Sbjct: 66 SKSESIKINE 75 >gi|253580755|ref|ZP_04858019.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848126|gb|EES76092.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 220 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G RI+ RR+ L ++Q + E +G+T + +YE G + +SE L + + Sbjct: 39 IGSRIKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 98 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ + + QL + +D + ++ +++ Sbjct: 99 KGETDEYETDITDKRELQIRDAMGDILEQLPLALTKEEDAFSKDLLLLMLKQ 150 >gi|182626312|ref|ZP_02954068.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177908410|gb|EDT70952.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] Length = 180 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R ++Q+ L E GI+ + E ++ ++ L+ + Sbjct: 1 MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALANSLKLDLKS 60 Query: 73 FFDV 76 FFD Sbjct: 61 FFDD 64 >gi|167825520|ref|ZP_02456991.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|217421247|ref|ZP_03452752.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|226193747|ref|ZP_03789349.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|217396659|gb|EEC36676.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|225934052|gb|EEH30037.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] Length = 195 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 4/90 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R + G S + L E ++ + E+ + A L+ ++ L + Sbjct: 3 INQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSNPTAVVLERLANALGVSL 62 Query: 71 SFFFDVS----PTVCSDISSEENNVMDFIS 96 + F+ ++E+ D S Sbjct: 63 ASLFEDDRAARAASPLSRATEQPVWKDPAS 92 >gi|167461736|ref|ZP_02326825.1| putative prophage LambdaCh01, repressor protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 120 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 4/105 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+ R M+Q KL + + V +E G + + +S + + P + Sbjct: 6 FLGSRMAELRKKRNMTQAKLASIVKKSTSAVAMWETGKRDPDSQMIIELSSIFDVPTDYL 65 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 D + +E ++ + + ++I + Sbjct: 66 LGRTNDPDDRLKYSARNENYLKIERFARKVSNEDLEKAVKILEAA 110 >gi|154506669|ref|ZP_02043126.1| hypothetical protein RUMGNA_03936 [Ruminococcus gnavus ATCC 29149] gi|153793318|gb|EDN75741.1| hypothetical protein RUMGNA_03936 [Ruminococcus gnavus ATCC 29149] Length = 68 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 23/62 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R ++Q+ + L I +YE G + S L + + + Sbjct: 5 ERIKALREDRDLTQKNICAYLNIAQNTYSQYENGKREIPISILIKLCLYFGVSSDYILGL 64 Query: 77 SP 78 S Sbjct: 65 SD 66 >gi|153955922|ref|YP_001396687.1| hypothetical protein CKL_3313 [Clostridium kluyveri DSM 555] gi|219856264|ref|YP_002473386.1| hypothetical protein CKR_2921 [Clostridium kluyveri NBRC 12016] gi|146348780|gb|EDK35316.1| Hypothetical protein CKL_3313 [Clostridium kluyveri DSM 555] gi|219569988|dbj|BAH07972.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 80 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 31/74 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +IR R LGM+ L E +G+ + K E L I+E L + S Sbjct: 1 MLGTKIREYRKSLGMTATSLAEKVGVELATISKIENNKANPSMPTLYKIAEALNTTPSEL 60 Query: 74 FDVSPTVCSDISSE 87 + +I+SE Sbjct: 61 IKDTEIKSFNINSE 74 >gi|116255759|ref|YP_771592.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115260407|emb|CAK03511.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 243 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 50 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 109 Query: 69 PISFFFDVSPTVCSDI 84 P++ FF + + Sbjct: 110 PLTAFFRRFEEPRNAV 125 >gi|91787363|ref|YP_548315.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91696588|gb|ABE43417.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 201 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 42/125 (33%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P + +G R+R R ++ + L G+ + K E G V +L ++ L Sbjct: 11 APEADRVQLGLRLREHRKARRLTLKDLSGRSGVALSTLSKMELGQMSVSYEKLAAVARAL 70 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + D + + + P N + + +++ L I Sbjct: 71 SLDVGQLLDARAAAPAGAVTPVVVWSEADGAPAYSSGNYDYRMLATGFPGKRMTPLHGRI 130 Query: 127 VSSEK 131 ++ E+ Sbjct: 131 LARER 135 >gi|302388982|ref|YP_003824803.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] gi|302199610|gb|ADL07180.1| helix-turn-helix domain protein [Thermosediminibacter oceani DSM 16646] Length = 135 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 47/112 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R G+S+E+L L +++ + KYE V + L+ I++ + + + Sbjct: 4 GERLQELRKEKGISREELARALQVSYSAIAKYETNVRKPDQETLKKIADYFDVTVDYLLG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 S E + T ++ + ++ ++ + ++ ++ Sbjct: 64 RSNHRQLTRRDERDIEKIIEETRHRIENTEGLLLDGEILSQEDVDAIINAMR 115 >gi|302555572|ref|ZP_07307914.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302473190|gb|EFL36283.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 212 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + V VG RIR R+ G S L +G++ V + E G ++ S L I+ L Sbjct: 1 MSSAVVPPVGARIRQARLERGTSLRALAREVGVSASLVSQIETGKSQPSVSTLYAITTAL 60 Query: 67 ESPISFFFD 75 + FD Sbjct: 61 GISVESLFD 69 >gi|258516796|ref|YP_003193018.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780501|gb|ACV64395.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 133 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +N+G RIR +R++ +Q++L E + ++ Q + +E+G + + +++ L + Sbjct: 1 MNIGNRIRTQRILKDFTQKQLAELVNVSPQVISNWERGYTPVIPHDDVVRLADALGISPA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + + + E+ + D L ++ ++ Q + + V+ + Sbjct: 61 YLLCETDISETPEQQIESAIND------DADLLEFWHELKKRDDLQLLFKQVKPLS 110 >gi|172034932|ref|YP_001801433.1| hypothetical protein cce_0015 [Cyanothece sp. ATCC 51142] gi|171696386|gb|ACB49367.1| unknown [Cyanothece sp. ATCC 51142] Length = 361 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 46/111 (41%), Gaps = 6/111 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + G++++ R+I +SQE+L E + + + E+G ++ Sbjct: 1 MPSKLSMKDEILRQFGQKLQKWRLIQNLSQEQLAEIINVDRTYISLLERGKRNPSLICIK 60 Query: 61 HISEVLESPISFFF------DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 ++E L ++ + C + + N+ D ++ P + + R Sbjct: 61 SLAEALNINLNELILIPEWQENLQNFCHKYNIDMENLADVLNDPKVIPMIR 111 >gi|166030732|ref|ZP_02233561.1| hypothetical protein DORFOR_00406 [Dorea formicigenerans ATCC 27755] gi|166029524|gb|EDR48281.1| hypothetical protein DORFOR_00406 [Dorea formicigenerans ATCC 27755] Length = 222 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R G++Q+ LGE L +T + V K+E G + + L+ + + L +S Sbjct: 8 GTFIAECRKEKGLTQKALGEKLNVTDRAVSKWETGRSFPDVAILEDLCQELGISVSELLA 67 Query: 76 VSPTVCSDISSEEN 89 E Sbjct: 68 GKKIEAEHYQEETE 81 >gi|153853834|ref|ZP_01995190.1| hypothetical protein DORLON_01181 [Dorea longicatena DSM 13814] gi|149753584|gb|EDM63515.1| hypothetical protein DORLON_01181 [Dorea longicatena DSM 13814] Length = 377 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R M+QE+L E +G++ Q V K+E +L+ ++E+ E I+ Sbjct: 1 MTLGEKIYKLRTKRSMTQEQLAEKIGVSRQSVSKWETDSAIPDIEKLKLLAEIFEVSITE 60 Query: 73 F--FDVSPTVCSDISSEENNVMDFISTPD 99 + E Sbjct: 61 LLGMECEEDTKRKDEKERIEHCQKEIKRW 89 >gi|66391801|ref|YP_238525.1| DNA binding protein [Streptococcus phage 2972] gi|168229317|ref|YP_001686838.1| orf44 [Streptococcus phage 858] gi|56718458|gb|AAW27964.1| DNA binding protein [Streptococcus phage 2972] gi|155241712|gb|ABT18032.1| orf44 [Streptococcus phage 858] Length = 170 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/107 (13%), Positives = 38/107 (35%), Gaps = 2/107 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++ +L E +G+T + +E G + S + ++E I + Sbjct: 2 NRLKELRKQKKLTIVELAEKIGVTKLTILNWEHGTREIKGSNAKKLAEYFNVSIPYLLGY 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV--KVRQKIIE 121 + N +++I + ++R +++ Sbjct: 62 DTDNTFSDLITKINHWADERNLKQADPKIQWMRITEEVGEIRDVLLK 108 >gi|159185809|ref|NP_357025.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159140943|gb|AAK89810.2| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 472 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 15/141 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K + +G+++R R +Q + E LGI+ + + E V AS L Sbjct: 1 MATEK-------LFIGRKVRGLRENARATQAQFAERLGISASYLNQIENNQRPVSASVLV 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + E + ++ E F++ GLQ + Q Sbjct: 54 TLVEKFQLDMAELATGENDRLVSAVREALKDPLFMNYEPGLQELKLIAQNAP-------- 105 Query: 121 ELVRSIVSSEKKYRTIEEECM 141 +++ + + YR E+ + Sbjct: 106 GFAHALLRAHQAYRQNSEQLV 126 >gi|150016139|ref|YP_001308393.1| helix-turn-helix domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149902604|gb|ABR33437.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB 8052] Length = 184 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G +++ R +S ++ + G++ + + E+G + S L IS L+ Sbjct: 4 LNSIIGSKLKEIRNKRELSLDEAAKLTGVSKAMLGQIERGQSNPTVSTLWKISTGLKVSF 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 SFF D + ++NN+ I ++L F Sbjct: 64 SFFIDEEQDELEIV--DQNNIDPIIEDDARMKLYPIFP 99 >gi|313113184|ref|ZP_07798810.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624523|gb|EFQ07852.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 270 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 7/118 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G + R GM+Q++L CL ++ + V K+E+G++ S L ++E L ++ Sbjct: 25 GSFLAQLRREKGMTQKELAACLYVSDKAVSKWERGLSVPDISLLVPLAEQLNVTVAELLH 84 Query: 75 -----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + + + F + P + R + V ++ LV + Sbjct: 85 GCRVEEEQRFTREETEELIRKALTFSAEPPERRQARTQKFLPLYGV-SVVLGLVETAA 141 >gi|257438852|ref|ZP_05614607.1| acetyltransferase, GNAT family [Faecalibacterium prausnitzii A2-165] gi|257198667|gb|EEU96951.1| acetyltransferase, GNAT family [Faecalibacterium prausnitzii A2-165] Length = 381 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R G++Q +L L ++ + + K+E S L+ ++ L + Sbjct: 7 GSTIRQLREAKGLTQAELAGTLSVSAKTISKWETAKGLPDISLLEPLAAALGVSVLELMQ 66 Query: 76 VSP 78 P Sbjct: 67 GEP 69 >gi|170758715|ref|YP_001786212.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169405704|gb|ACA54115.1| HTH domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 381 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I +R G++QE+L +G++ V K+E G++ L ++ + Sbjct: 6 IGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLSYPDILFLPELATYFNISVDELL 65 Query: 75 DVSPTVCSDISS 86 SP + + Sbjct: 66 GYSPQLTKEDIK 77 >gi|56424516|gb|AAV91189.1| repressor [Vibrio cholerae] gi|56424526|gb|AAV91194.1| repressor [Vibrio cholerae] Length = 85 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 35/82 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +IR R+ ++QE++ +G+ YEKG ++ +++ PI+ Sbjct: 4 SKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAELVSD 63 Query: 77 SPTVCSDISSEENNVMDFISTP 98 S T + + +++ + P Sbjct: 64 SETNIDEKLKSKIRMIESLDEP 85 >gi|15801869|ref|NP_287889.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 EDL933] gi|15831130|ref|NP_309903.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. Sakai] gi|168749060|ref|ZP_02774082.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4113] gi|168755982|ref|ZP_02780989.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4401] gi|168762686|ref|ZP_02787693.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4501] gi|168769383|ref|ZP_02794390.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4486] gi|168775126|ref|ZP_02800133.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4196] gi|168782830|ref|ZP_02807837.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4076] gi|168788374|ref|ZP_02813381.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC869] gi|168799611|ref|ZP_02824618.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC508] gi|208811113|ref|ZP_03252946.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4206] gi|208815007|ref|ZP_03256186.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4045] gi|208820275|ref|ZP_03260595.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4042] gi|209400310|ref|YP_002270360.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4115] gi|217329459|ref|ZP_03445539.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. TW14588] gi|254792894|ref|YP_003077731.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. TW14359] gi|261224290|ref|ZP_05938571.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str. FRIK2000] gi|261257454|ref|ZP_05949987.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str. FRIK966] gi|291282394|ref|YP_003499212.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|12515475|gb|AAG56505.1|AE005376_10 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13361341|dbj|BAB35299.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187769283|gb|EDU33127.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4196] gi|188016620|gb|EDU54742.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4113] gi|188999714|gb|EDU68700.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4076] gi|189356802|gb|EDU75221.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4401] gi|189361581|gb|EDU80000.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4486] gi|189367033|gb|EDU85449.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4501] gi|189371817|gb|EDU90233.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC869] gi|189377991|gb|EDU96407.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC508] gi|208724619|gb|EDZ74327.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4206] gi|208731655|gb|EDZ80343.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4045] gi|208740398|gb|EDZ88080.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4042] gi|209161710|gb|ACI39143.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. EC4115] gi|209771738|gb|ACI84181.1| hypothetical protein ECs1876 [Escherichia coli] gi|209771740|gb|ACI84182.1| hypothetical protein ECs1876 [Escherichia coli] gi|209771742|gb|ACI84183.1| hypothetical protein ECs1876 [Escherichia coli] gi|209771744|gb|ACI84184.1| hypothetical protein ECs1876 [Escherichia coli] gi|209771746|gb|ACI84185.1| hypothetical protein ECs1876 [Escherichia coli] gi|217317898|gb|EEC26326.1| transcriptional regulator PuuR [Escherichia coli O157:H7 str. TW14588] gi|254592294|gb|ACT71655.1| DNA-binding transcriptional repressor [Escherichia coli O157:H7 str. TW14359] gi|290762267|gb|ADD56228.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7 str. CB9615] gi|320189942|gb|EFW64594.1| Putrescine utilization regulator [Escherichia coli O157:H7 str. EC1212] gi|320637202|gb|EFX07028.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. G5101] gi|320642569|gb|EFX11817.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H- str. 493-89] gi|320647922|gb|EFX16630.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H- str. H 2687] gi|320653523|gb|EFX21628.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659223|gb|EFX26812.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O55:H7 str. USDA 5905] gi|320664016|gb|EFX31203.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O157:H7 str. LSU-61] gi|326341032|gb|EGD64825.1| Putrescine utilization regulator [Escherichia coli O157:H7 str. 1125] gi|326343272|gb|EGD67039.1| Putrescine utilization regulator [Escherichia coli O157:H7 str. 1044] Length = 185 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 8/105 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P GKR+ R G+SQ + E G+T + E+ S LQ Sbjct: 1 MSDEGLAP-------GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQ 53 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +V +S FF + + ++++++ S ++L Sbjct: 54 KLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLV 98 >gi|194433805|ref|ZP_03066079.1| transcriptional regulator PuuR [Shigella dysenteriae 1012] gi|194417908|gb|EDX34003.1| transcriptional regulator PuuR [Shigella dysenteriae 1012] gi|332098182|gb|EGJ03155.1| helix-turn-helix family protein [Shigella dysenteriae 155-74] Length = 185 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 8/105 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P GKR+ R G+SQ + E G+T + E+ S LQ Sbjct: 1 MSDEGLAP-------GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQ 53 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +V +S FF + + ++++++ S ++L Sbjct: 54 KLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLV 98 >gi|193067087|ref|ZP_03048056.1| transcriptional regulator PuuR [Escherichia coli E110019] gi|192959677|gb|EDV90111.1| transcriptional regulator PuuR [Escherichia coli E110019] Length = 185 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 8/105 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P GKR+ R G+SQ + E G+T + E+ S LQ Sbjct: 1 MSDEGLAP-------GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQ 53 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +V +S FF + + ++++++ S ++L Sbjct: 54 KLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLV 98 >gi|219667028|ref|YP_002457463.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537288|gb|ACL19027.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 277 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 9/114 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K I R G +QE+L LG+TFQ V K+E + L +S++L+ I Sbjct: 4 ELAKNICRYRKEKGFTQEELARKLGVTFQAVSKWETSQTLPDITLLPGLSQLLDISIDKL 63 Query: 74 F-----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 D T+ + + + + L++ R K++++ Sbjct: 64 LGFVSYDKQITIYEEEYKTQEYYWGIVPSKMCLRVLELIP----PTTRLKLLDI 113 >gi|16129260|ref|NP_415815.1| DNA-binding transcriptional repressor for the puu divergon [Escherichia coli str. K-12 substr. MG1655] gi|24112698|ref|NP_707208.1| DNA-binding transcriptional repressor PuuR [Shigella flexneri 2a str. 301] gi|30062819|ref|NP_836990.1| DNA-binding transcriptional repressor PuuR [Shigella flexneri 2a str. 2457T] gi|74312331|ref|YP_310750.1| DNA-binding transcriptional repressor PuuR [Shigella sonnei Ss046] gi|82544245|ref|YP_408192.1| DNA-binding transcriptional repressor PuuR [Shigella boydii Sb227] gi|82777190|ref|YP_403539.1| DNA-binding transcriptional repressor PuuR [Shigella dysenteriae Sd197] gi|89108145|ref|AP_001925.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. W3110] gi|157158238|ref|YP_001462606.1| DNA-binding transcriptional repressor PuuR [Escherichia coli E24377A] gi|157160810|ref|YP_001458128.1| DNA-binding transcriptional repressor PuuR [Escherichia coli HS] gi|170020334|ref|YP_001725288.1| DNA-binding transcriptional repressor PuuR [Escherichia coli ATCC 8739] gi|170080978|ref|YP_001730298.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. DH10B] gi|170680966|ref|YP_001743877.1| DNA-binding transcriptional repressor PuuR [Escherichia coli SMS-3-5] gi|170768785|ref|ZP_02903238.1| transcriptional regulator PuuR [Escherichia albertii TW07627] gi|187731345|ref|YP_001880138.1| DNA-binding transcriptional repressor PuuR [Shigella boydii CDC 3083-94] gi|188493518|ref|ZP_03000788.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli 53638] gi|191165095|ref|ZP_03026939.1| transcriptional regulator PuuR [Escherichia coli B7A] gi|193062757|ref|ZP_03043851.1| transcriptional regulator PuuR [Escherichia coli E22] gi|194425904|ref|ZP_03058460.1| transcriptional regulator PuuR [Escherichia coli B171] gi|194437065|ref|ZP_03069164.1| transcriptional regulator PuuR [Escherichia coli 101-1] gi|209918542|ref|YP_002292626.1| DNA-binding transcriptional repressor PuuR [Escherichia coli SE11] gi|218553857|ref|YP_002386770.1| DNA-binding transcriptional repressor PuuR [Escherichia coli IAI1] gi|218694875|ref|YP_002402542.1| DNA-binding transcriptional repressor PuuR [Escherichia coli 55989] gi|218700021|ref|YP_002407650.1| DNA-binding transcriptional repressor PuuR [Escherichia coli IAI39] gi|218704829|ref|YP_002412348.1| DNA-binding transcriptional repressor PuuR [Escherichia coli UMN026] gi|238900535|ref|YP_002926331.1| DNA-binding transcriptional repressor [Escherichia coli BW2952] gi|253773699|ref|YP_003036530.1| DNA-binding transcriptional repressor PuuR [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161379|ref|YP_003044487.1| DNA-binding transcriptional repressor PuuR [Escherichia coli B str. REL606] gi|256018450|ref|ZP_05432315.1| DNA-binding transcriptional repressor PuuR [Shigella sp. D9] gi|256022988|ref|ZP_05436853.1| DNA-binding transcriptional repressor PuuR [Escherichia sp. 4_1_40B] gi|260843648|ref|YP_003221426.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O103:H2 str. 12009] gi|260854998|ref|YP_003228889.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O26:H11 str. 11368] gi|260867748|ref|YP_003234150.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O111:H- str. 11128] gi|293404842|ref|ZP_06648834.1| transcriptional regulator [Escherichia coli FVEC1412] gi|293409702|ref|ZP_06653278.1| HTH-type transcriptional regulator puuR [Escherichia coli B354] gi|293414636|ref|ZP_06657285.1| putrescine utilization regulator [Escherichia coli B185] gi|293433661|ref|ZP_06662089.1| HTH-type transcriptional regulator puuR [Escherichia coli B088] gi|297516524|ref|ZP_06934910.1| DNA-binding transcriptional repressor PuuR [Escherichia coli OP50] gi|298380485|ref|ZP_06990084.1| DNA-binding transcriptional repressor PuuR [Escherichia coli FVEC1302] gi|300818983|ref|ZP_07099187.1| cupin domain protein [Escherichia coli MS 107-1] gi|300822532|ref|ZP_07102671.1| cupin domain protein [Escherichia coli MS 119-7] gi|300897366|ref|ZP_07115793.1| cupin domain protein [Escherichia coli MS 198-1] gi|300904951|ref|ZP_07122769.1| cupin domain protein [Escherichia coli MS 84-1] gi|300919489|ref|ZP_07135988.1| cupin domain protein [Escherichia coli MS 115-1] gi|300926689|ref|ZP_07142464.1| cupin domain protein [Escherichia coli MS 182-1] gi|300927813|ref|ZP_07143375.1| cupin domain protein [Escherichia coli MS 187-1] gi|300935406|ref|ZP_07150404.1| cupin domain protein [Escherichia coli MS 21-1] gi|300948384|ref|ZP_07162487.1| cupin domain protein [Escherichia coli MS 116-1] gi|300954551|ref|ZP_07166997.1| cupin domain protein [Escherichia coli MS 175-1] gi|301017611|ref|ZP_07182285.1| cupin domain protein [Escherichia coli MS 69-1] gi|301022735|ref|ZP_07186583.1| cupin domain protein [Escherichia coli MS 196-1] gi|301304353|ref|ZP_07210466.1| cupin domain protein [Escherichia coli MS 124-1] gi|301326966|ref|ZP_07220258.1| cupin domain protein [Escherichia coli MS 78-1] gi|301647199|ref|ZP_07247020.1| cupin domain protein [Escherichia coli MS 146-1] gi|307137942|ref|ZP_07497298.1| DNA-binding transcriptional repressor PuuR [Escherichia coli H736] gi|307309944|ref|ZP_07589594.1| transcriptional regulator, XRE family [Escherichia coli W] gi|309788300|ref|ZP_07682904.1| helix-turn-helix family protein [Shigella dysenteriae 1617] gi|309796914|ref|ZP_07691315.1| cupin domain protein [Escherichia coli MS 145-7] gi|312971493|ref|ZP_07785668.1| helix-turn-helix family protein [Escherichia coli 1827-70] gi|331641864|ref|ZP_08342999.1| HTH-type transcriptional regulator PuuR [Escherichia coli H736] gi|331652348|ref|ZP_08353367.1| HTH-type transcriptional regulator PuuR [Escherichia coli M718] gi|331662718|ref|ZP_08363641.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA143] gi|331667689|ref|ZP_08368553.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA271] gi|331672830|ref|ZP_08373616.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA280] gi|331682793|ref|ZP_08383412.1| HTH-type transcriptional regulator PuuR [Escherichia coli H299] gi|332279502|ref|ZP_08391915.1| transcriptional regulator PuuR [Shigella sp. D9] gi|71164830|sp|P0A9U6|PUUR_ECOLI RecName: Full=HTH-type transcriptional regulator puuR gi|71164831|sp|P0A9U7|PUUR_SHIFL RecName: Full=HTH-type transcriptional regulator puuR gi|1742129|dbj|BAA14868.1| DNA-binding transcriptional repressor [Escherichia coli str. K12 substr. W3110] gi|1787557|gb|AAC74381.1| DNA-binding transcriptional repressor for the puu divergon [Escherichia coli str. K-12 substr. MG1655] gi|24051617|gb|AAN42915.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30041067|gb|AAP16797.1| hypothetical protein S1386 [Shigella flexneri 2a str. 2457T] gi|58197515|dbj|BAD88707.1| transcriptional repressor [Escherichia coli K-12] gi|73855808|gb|AAZ88515.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|81241338|gb|ABB62048.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|81245656|gb|ABB66364.1| conserved hypothetical protein [Shigella boydii Sb227] gi|157066490|gb|ABV05745.1| transcriptional regulator PuuR [Escherichia coli HS] gi|157080268|gb|ABV19976.1| transcriptional regulator PuuR [Escherichia coli E24377A] gi|169755262|gb|ACA77961.1| transcriptional regulator, XRE family [Escherichia coli ATCC 8739] gi|169888813|gb|ACB02520.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12 substr. DH10B] gi|170122333|gb|EDS91264.1| transcriptional regulator PuuR [Escherichia albertii TW07627] gi|170518684|gb|ACB16862.1| transcriptional regulator PuuR [Escherichia coli SMS-3-5] gi|187428337|gb|ACD07611.1| transcriptional regulator PuuR [Shigella boydii CDC 3083-94] gi|188488717|gb|EDU63820.1| helix-turn-helix DNA-binding/cupin domain protein [Escherichia coli 53638] gi|190904867|gb|EDV64572.1| transcriptional regulator PuuR [Escherichia coli B7A] gi|192931879|gb|EDV84479.1| transcriptional regulator PuuR [Escherichia coli E22] gi|194415959|gb|EDX32225.1| transcriptional regulator PuuR [Escherichia coli B171] gi|194424048|gb|EDX40036.1| transcriptional regulator PuuR [Escherichia coli 101-1] gi|209911801|dbj|BAG76875.1| conserved hypothetical protein [Escherichia coli SE11] gi|218351607|emb|CAU97319.1| DNA-binding transcriptional repressor [Escherichia coli 55989] gi|218360625|emb|CAQ98183.1| DNA-binding transcriptional repressor [Escherichia coli IAI1] gi|218370007|emb|CAR17781.1| DNA-binding transcriptional repressor [Escherichia coli IAI39] gi|218431926|emb|CAR12811.1| DNA-binding transcriptional repressor [Escherichia coli UMN026] gi|238860975|gb|ACR62973.1| DNA-binding transcriptional repressor [Escherichia coli BW2952] gi|242377078|emb|CAQ31804.1| DNA-binding transcriptional repressor [Escherichia coli BL21(DE3)] gi|253324743|gb|ACT29345.1| transcriptional regulator, XRE family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973280|gb|ACT38951.1| DNA-binding transcriptional repressor [Escherichia coli B str. REL606] gi|253977494|gb|ACT43164.1| DNA-binding transcriptional repressor [Escherichia coli BL21(DE3)] gi|257753647|dbj|BAI25149.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O26:H11 str. 11368] gi|257758795|dbj|BAI30292.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O103:H2 str. 12009] gi|257764104|dbj|BAI35599.1| DNA-binding transcriptional repressor PuuR [Escherichia coli O111:H- str. 11128] gi|260449568|gb|ACX39990.1| transcriptional regulator, XRE family [Escherichia coli DH1] gi|281600723|gb|ADA73707.1| HTH-type transcriptional regulator puuR [Shigella flexneri 2002017] gi|284921184|emb|CBG34250.1| transcriptional regulator of the polyamine metabolism genes [Escherichia coli 042] gi|291324480|gb|EFE63902.1| HTH-type transcriptional regulator puuR [Escherichia coli B088] gi|291427050|gb|EFF00077.1| transcriptional regulator [Escherichia coli FVEC1412] gi|291434694|gb|EFF07667.1| putrescine utilization regulator [Escherichia coli B185] gi|291470170|gb|EFF12654.1| HTH-type transcriptional regulator puuR [Escherichia coli B354] gi|298277927|gb|EFI19441.1| DNA-binding transcriptional repressor PuuR [Escherichia coli FVEC1302] gi|299881132|gb|EFI89343.1| cupin domain protein [Escherichia coli MS 196-1] gi|300318461|gb|EFJ68245.1| cupin domain protein [Escherichia coli MS 175-1] gi|300358850|gb|EFJ74720.1| cupin domain protein [Escherichia coli MS 198-1] gi|300400105|gb|EFJ83643.1| cupin domain protein [Escherichia coli MS 69-1] gi|300403100|gb|EFJ86638.1| cupin domain protein [Escherichia coli MS 84-1] gi|300413443|gb|EFJ96753.1| cupin domain protein [Escherichia coli MS 115-1] gi|300417265|gb|EFK00576.1| cupin domain protein [Escherichia coli MS 182-1] gi|300452059|gb|EFK15679.1| cupin domain protein [Escherichia coli MS 116-1] gi|300459384|gb|EFK22877.1| cupin domain protein [Escherichia coli MS 21-1] gi|300464098|gb|EFK27591.1| cupin domain protein [Escherichia coli MS 187-1] gi|300524948|gb|EFK46017.1| cupin domain protein [Escherichia coli MS 119-7] gi|300528444|gb|EFK49506.1| cupin domain protein [Escherichia coli MS 107-1] gi|300840340|gb|EFK68100.1| cupin domain protein [Escherichia coli MS 124-1] gi|300846437|gb|EFK74197.1| cupin domain protein [Escherichia coli MS 78-1] gi|301074685|gb|EFK89491.1| cupin domain protein [Escherichia coli MS 146-1] gi|306909662|gb|EFN40156.1| transcriptional regulator, XRE family [Escherichia coli W] gi|308119442|gb|EFO56704.1| cupin domain protein [Escherichia coli MS 145-7] gi|308923682|gb|EFP69185.1| helix-turn-helix family protein [Shigella dysenteriae 1617] gi|309701599|emb|CBJ00906.1| transcriptional regulator of the polyamine metabolism genes [Escherichia coli ETEC H10407] gi|310336090|gb|EFQ01290.1| helix-turn-helix family protein [Escherichia coli 1827-70] gi|313649492|gb|EFS13923.1| helix-turn-helix family protein [Shigella flexneri 2a str. 2457T] gi|315060554|gb|ADT74881.1| DNA-binding transcriptional repressor [Escherichia coli W] gi|315135938|dbj|BAJ43097.1| transcriptional regulator [Escherichia coli DH1] gi|315254342|gb|EFU34310.1| cupin domain protein [Escherichia coli MS 85-1] gi|315619382|gb|EFU99926.1| helix-turn-helix family protein [Escherichia coli 3431] gi|320180265|gb|EFW55200.1| Putrescine utilization regulator [Shigella boydii ATCC 9905] gi|320187693|gb|EFW62369.1| Putrescine utilization regulator [Shigella flexneri CDC 796-83] gi|320199337|gb|EFW73928.1| Putrescine utilization regulator [Escherichia coli EC4100B] gi|323153351|gb|EFZ39608.1| helix-turn-helix family protein [Escherichia coli EPECa14] gi|323162336|gb|EFZ48191.1| helix-turn-helix family protein [Escherichia coli E128010] gi|323168281|gb|EFZ53966.1| helix-turn-helix family protein [Shigella sonnei 53G] gi|323172339|gb|EFZ57976.1| helix-turn-helix family protein [Escherichia coli LT-68] gi|323179742|gb|EFZ65303.1| helix-turn-helix family protein [Escherichia coli 1180] gi|323185537|gb|EFZ70898.1| helix-turn-helix family protein [Escherichia coli 1357] gi|323378885|gb|ADX51153.1| Cupin 2 conserved barrel domain protein [Escherichia coli KO11] gi|323937624|gb|EGB33892.1| cupin domain-containing protein [Escherichia coli E1520] gi|323942417|gb|EGB38587.1| cupin domain-containing protein [Escherichia coli E482] gi|323947750|gb|EGB43753.1| cupin domain-containing protein [Escherichia coli H120] gi|323962457|gb|EGB58039.1| cupin domain-containing protein [Escherichia coli H489] gi|323964563|gb|EGB60037.1| cupin domain-containing protein [Escherichia coli M863] gi|323973458|gb|EGB68644.1| cupin domain-containing protein [Escherichia coli TA007] gi|323977066|gb|EGB72153.1| cupin domain-containing protein [Escherichia coli TW10509] gi|324117506|gb|EGC11412.1| cupin domain-containing protein [Escherichia coli E1167] gi|327253996|gb|EGE65625.1| helix-turn-helix family protein [Escherichia coli STEC_7v] gi|331038662|gb|EGI10882.1| HTH-type transcriptional regulator PuuR [Escherichia coli H736] gi|331050626|gb|EGI22684.1| HTH-type transcriptional regulator PuuR [Escherichia coli M718] gi|331061140|gb|EGI33104.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA143] gi|331065274|gb|EGI37169.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA271] gi|331070051|gb|EGI41420.1| HTH-type transcriptional regulator PuuR [Escherichia coli TA280] gi|331080424|gb|EGI51603.1| HTH-type transcriptional regulator PuuR [Escherichia coli H299] gi|332091697|gb|EGI96777.1| helix-turn-helix family protein [Shigella boydii 5216-82] gi|332094835|gb|EGI99879.1| helix-turn-helix family protein [Shigella boydii 3594-74] gi|332101854|gb|EGJ05200.1| transcriptional regulator PuuR [Shigella sp. D9] gi|332342898|gb|AEE56232.1| DNA-binding transcriptional repressor PuuR [Escherichia coli UMNK88] gi|332757959|gb|EGJ88286.1| helix-turn-helix family protein [Shigella flexneri 4343-70] gi|332759548|gb|EGJ89856.1| helix-turn-helix family protein [Shigella flexneri 2747-71] gi|332760399|gb|EGJ90689.1| helix-turn-helix family protein [Shigella flexneri K-671] gi|332767540|gb|EGJ97734.1| DNA-binding transcriptional repressor [Shigella flexneri 2930-71] gi|333005778|gb|EGK25296.1| helix-turn-helix family protein [Shigella flexneri K-218] gi|333007643|gb|EGK27121.1| helix-turn-helix family protein [Shigella flexneri K-272] gi|333019110|gb|EGK38400.1| helix-turn-helix family protein [Shigella flexneri K-304] gi|333019578|gb|EGK38858.1| helix-turn-helix family protein [Shigella flexneri K-227] Length = 185 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 8/105 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P GKR+ R G+SQ + E G+T + E+ S LQ Sbjct: 1 MSDEGLAP-------GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQ 53 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +V +S FF + + ++++++ S ++L Sbjct: 54 KLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLV 98 >gi|307324371|ref|ZP_07603579.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306890102|gb|EFN21080.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 203 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 3/90 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + +D V KRIR R LG S + L ++ + + E G R+ +L Sbjct: 1 MTQED---SALDGLVRKRIRGLRSALGWSLDDLAARCYLSPSTLSRIETGHRRISLDQLS 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN 90 I+ L + + + I + + Sbjct: 58 AIARALGTTLDQLVESDADDDVIIRPQHDM 87 >gi|299768500|ref|YP_003730526.1| hypothetical protein AOLE_01250 [Acinetobacter sp. DR1] gi|298698588|gb|ADI89153.1| hypothetical protein AOLE_01250 [Acinetobacter sp. DR1] Length = 183 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 32/88 (36%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +VG IR R +SQ+ L + G++ + + E G + ++L I+ VL Sbjct: 7 VLQHVGTNIRSLRDERDLSQQDLADQAGVSRRTIAALETGQVNISLAKLDAIAAVLGVDF 66 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTP 98 + + + + Sbjct: 67 RTIVSAPEHKEQALVNALAWQGEKEESR 94 >gi|295090228|emb|CBK76335.1| Helix-turn-helix. [Clostridium cf. saccharolyticum K10] Length = 136 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 55/124 (44%), Gaps = 3/124 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFFF 74 G++++ R LG++Q++L E +G+T + + YE +R + ++E L +++ Sbjct: 4 GEKVKAERTKLGLNQDELAEKIGVTRRVICSYENDKSRPRGTERYKKLAEALNVNVNYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIELVRSIVSSEKK 132 +D+ + + ++ F ++ D +R+ + + + + ++K Sbjct: 64 SEDDAFIADVEDKYGRRGARQAQELLAEVTGLFAGGEMADEDMREMVDAIQEAYLIAKKN 123 Query: 133 YRTI 136 + Sbjct: 124 NKKY 127 >gi|295132275|ref|YP_003582951.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294980290|gb|ADF50755.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 140 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 59/133 (44%), Gaps = 9/133 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R + GM QE L LGI+ Q V E+ + + +L+ +++VL Sbjct: 15 HIGRKISRIRELRGMKQEALAAELGISRQSVSSLEQSEH-IEDEKLEKVAKVLGVSKEAI 73 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQ--LNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + S + + + + + L++ +++ K +L ++ +EK Sbjct: 74 ENFSEELAINFFNSFQDSSNGTFNNHCTFNPLDKLMESVEENK------KLYERLLQAEK 127 Query: 132 KYRTIEEECMVEQ 144 + T E+ + ++ Sbjct: 128 EKVTYLEKLLDKK 140 >gi|282864596|ref|ZP_06273651.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282560535|gb|EFB66082.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 203 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 2/91 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G + + G+ + + E G R L +++ + + Sbjct: 14 GPRLRAARERHGATLAGVSCATGVPPSTLSRIETGRRRPTLEVLTRLAKEYGASLDELAG 73 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 +P ++ + F L L RY Sbjct: 74 TAPAPVAEPRTSAP--HSFGDDKAVLPLTRY 102 >gi|227519556|ref|ZP_03949605.1| phage-like protein [Enterococcus faecalis TX0104] gi|257090840|ref|ZP_05585201.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|312902475|ref|ZP_07761681.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|227073005|gb|EEI10968.1| phage-like protein [Enterococcus faecalis TX0104] gi|256999652|gb|EEU86172.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|310634145|gb|EFQ17428.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315579716|gb|EFU91907.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 184 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 38/106 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R++ +R+ M+Q + GI+ + E G N +L I++ L + + Sbjct: 9 VGTRMKQKRLEKKMTQVDVATKSGISSKYYGSIENGKNSPSIEKLSAIAKALGCSLHYLL 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + + E + I + R +++ Sbjct: 69 NDRMEDTENRVAVETKRLQEIFNKIPRDKLSLVEGLIIQAARLRVL 114 >gi|134102747|ref|YP_001108408.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915370|emb|CAM05483.1| transcriptional regulator, XRE family with cupin sensor [Saccharopolyspora erythraea NRRL 2338] Length = 187 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 7/110 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G + L + GI + + E G R L I++ + P+ Sbjct: 4 AVGPRLRQIRRQRGCTLAALSKTTGIAVSTLSRLESGQRRPSLELLLPIAQAHQVPLDEL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQI-----DDVKVR 116 P + + D P Q + F I + R Sbjct: 64 VGAPPVGDPRVRLKPIRRGDMTVVPLTQQPGGLQAFKMIMGAGRSEPDPR 113 >gi|311747423|ref|ZP_07721208.1| putative toxin-antitoxin system, antitoxin component, Xre family [Algoriphagus sp. PR1] gi|126574781|gb|EAZ79152.1| putative toxin-antitoxin system, antitoxin component, Xre family [Algoriphagus sp. PR1] Length = 194 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 33/103 (32%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P + I +G +I+ R G + + G++ + K E G L I L Sbjct: 4 PEHLTIQIGNKIKGIRKEKGWKLGEFADKSGMSIAMLSKIENGRVIPTIPSLMQIINTLN 63 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 ++ FF D++S Y Q+ Sbjct: 64 LNLADFFSDLKVDGDFNGFIFRKKEDYVSLSKEEDSVGYHYQM 106 >gi|325453355|gb|ADZ13636.1| putative transcriptional regulator [Cronobacter phage ENT47670] Length = 229 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 49/115 (42%), Gaps = 1/115 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R M+ +L + + + E+G+ + +Q I+E L P++ Sbjct: 1 MKIGEKIRQIRKANQMTLSELALRVESDVGNLSRLERGMQGYSDTLIQKIAEALGVPVAE 60 Query: 73 FFDVSPTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 F + + D S + + + + + D + ++E++RSI Sbjct: 61 LFSSNEASDTVDTYSVGSIIKKGRNDVYRIDVLDVSASAGDGAASKDVVEVIRSI 115 >gi|311071151|ref|YP_003976074.1| phage element (ICEBs1)transcriptional regulator (Xre family) protein [Bacillus atrophaeus 1942] gi|310871668|gb|ADP35143.1| phage element (ICEBs1)transcriptional regulator (Xre family) protein [Bacillus atrophaeus 1942] Length = 127 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 34/82 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +++ R G++Q++L E L ++ + ++EK + L I+ + I F D Sbjct: 4 GHKLKTLRKQRGLTQKELAEKLFLSQSSITRFEKDEILPTSETLSKIANYFDVSIDFLLD 63 Query: 76 VSPTVCSDISSEENNVMDFIST 97 S+ E + I Sbjct: 64 RPQPPQKKNSNLEKAFNEAIEE 85 >gi|332652748|ref|ZP_08418493.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332517894|gb|EGJ47497.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 413 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G RI R G+SQE LGE +G++ Q V K+E + +S ++ Sbjct: 1 MTLGTRIAALRRERGLSQEALGELVGVSRQAVSKWESDSALPDVNNCVALSRAFGITLA 59 >gi|304387680|ref|ZP_07369865.1| phage repressor [Neisseria meningitidis ATCC 13091] gi|304338290|gb|EFM04415.1| phage repressor [Neisseria meningitidis ATCC 13091] Length = 125 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 13/120 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ +R LG++Q + E GI + KYE+GV L + +S F Sbjct: 8 GNRLKEKRKFLGLTQAQAAEKAGIERETWGKYERGVFMPSGDVLLSFLN-MGIDVSSLFA 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + +SE + + +L Y+ Q D + I+ + + +EKK Sbjct: 67 AEQGIRPSENSEI--------SKEESELLGYYRQASD-NGKFVILSVAK---GAEKKAAE 114 >gi|271961986|ref|YP_003336182.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505161|gb|ACZ83439.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 189 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 1/92 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR R G+S +L G+ + E G L ++ L P++ Sbjct: 25 VGQRIRRLREERGISLSELARRAGVGKATLSGLENGTRNPTLETLWAVTAQLGVPLA-LA 83 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + V + E + F +L R Sbjct: 84 VGTGPVIRGTAVEGVLLQVFEDEAVTYELYRL 115 >gi|291288151|ref|YP_003504967.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290885311|gb|ADD69011.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 273 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 28/74 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +IR G+ Q + +G++ ++ Y G L I+ LE + +F Sbjct: 1 MLGNKIRKLIKRKGIKQVDVCRAVGLSPSRLSNYLSGSREPDLETLSRIARFLEVKLDYF 60 Query: 74 FDVSPTVCSDISSE 87 + + E Sbjct: 61 AYGDNIKNTKETGE 74 Score = 36.7 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 28/74 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I+ R G ++ L + Q + + E G +++++ L ++ Sbjct: 73 GENIKKMREKRGFTKNDLAAVAKMDVQALTRIELGYGEFERDLIENLASCLTCSVADLIG 132 Query: 76 VSPTVCSDISSEEN 89 + ++++ Sbjct: 133 AEEGYSFEQGAQQS 146 >gi|146301419|ref|YP_001196010.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155837|gb|ABQ06691.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 138 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 59/144 (40%), Gaps = 7/144 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + PN ++G++I R + M QE L + +G Q V + + +L+ Sbjct: 1 MSTLTKPN----HMGRKISRIRELKDMKQEALAQAMGTNQQTV-SILENSEEIDDEKLKE 55 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKII 120 +++ L + + S + + ++ P G Q +F +D V+V ++ Sbjct: 56 VAKALGVSVEAIKNFSDEGVINYFNTFSDNS-INQGPIGNQNICHFNPLDKLVEVYEENK 114 Query: 121 ELVRSIVSSEKKYRTIEEECMVEQ 144 +L ++ SE+ E+ + + Sbjct: 115 KLYERLLKSEQDKIEYLEKLLKAK 138 >gi|38232718|ref|NP_938485.1| putative regulatory protein [Corynebacterium diphtheriae NCTC 13129] gi|38198976|emb|CAE48592.1| Putative regulatory protein [Corynebacterium diphtheriae] Length = 99 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 4/86 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK ++ + RIR+ R MS+ +L E + + Q + E+G + Sbjct: 13 MSPKKK----LERTIYNRIRVLRTERDMSRAQLAELVDVNPQTIGALERGDHSPSLDLAL 68 Query: 61 HISEVLESPISFFFDVSPTVCSDISS 86 I +V PI F P +S Sbjct: 69 RICDVFNLPIEAIFSRIPFTPLTAAS 94 >gi|148262951|ref|YP_001229657.1| cupin 2 domain-containing protein [Geobacter uraniireducens Rf4] gi|146396451|gb|ABQ25084.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 196 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P ++ +G++ R R ++ ++L E G++ + + E + L Sbjct: 1 MKEIK-PEIRELKLGEKARKLRQERRLTLQELAELTGLSKPLLSQIENDQVTPPIATLLK 59 Query: 62 ISEVLESPISFFFDVSPTV 80 I++ L+ I +FF+ Sbjct: 60 IAKGLKVGIHYFFEEEGDR 78 >gi|325279220|ref|YP_004251762.1| helix-turn-helix domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324311029|gb|ADY31582.1| helix-turn-helix domain protein [Odoribacter splanchnicus DSM 20712] Length = 129 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 26/70 (37%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + +G+R++ R S L I ++ KYE G L +S+ Sbjct: 4 NELLYRLGQRLKELRKAKKWSLRDLEALTDIDNSELSKYEFGFISPQLLSLYKLSQAFGI 63 Query: 69 PISFFFDVSP 78 +S D+ Sbjct: 64 TLSKLLDIEK 73 >gi|313634226|gb|EFS00863.1| DNA-binding protein [Listeria seeligeri FSL N1-067] Length = 104 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD I E + Sbjct: 61 FFDEEEHNQKVIYGELEH 78 >gi|300174134|ref|YP_003773300.1| hypothetical membrane protein [Leuconostoc gasicomitatum LMG 18811] gi|299888513|emb|CBL92481.1| hypothetical membrane protein [Leuconostoc gasicomitatum LMG 18811] Length = 156 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ RM + ++Q+K+ + IT Q V +E G + L +S+ I Sbjct: 4 GQKLQTARMNMNLTQQKIADDFFITRQTVSSWENGNSYPDIMTLLKLSDYFGFSIDEILR 63 Query: 76 VSP 78 Sbjct: 64 EDK 66 >gi|297198022|ref|ZP_06915419.1| regulatory protein [Streptomyces sviceus ATCC 29083] gi|297146969|gb|EFH28433.1| regulatory protein [Streptomyces sviceus ATCC 29083] Length = 190 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 11/117 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R+R R ++ L E GI+ + + E G+ + L I++ + Sbjct: 4 DDVLAEVGPRLRRLRKDREVTLAALSETTGISVSTLSRLESGLRKPSLELLLPIAQAHQV 63 Query: 69 PISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI-----DDVKVR 116 P+ P V S ++ G + F + ++ ++R Sbjct: 64 PLDELVGAPPVGDPRVRSAPLERHGRTFWPLTRQPGG--LQAFKVLVPRREEEPELR 118 >gi|295133194|ref|YP_003583870.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] gi|294981209|gb|ADF51674.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] Length = 152 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 3/133 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R + GM QE L LGI+ Q V E+ + + +L+ +++VL Sbjct: 21 HIGRKISRIRELRGMKQEALAAELGISQQSVSSLEQSEH-IEDEKLERVAKVLGVSKEAI 79 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDD-VKVRQKIIELVRSIVSSEK 131 + S + ++ + LN F +D V+ ++ +L ++ +EK Sbjct: 80 ENFSEENLIYNIQNNYEGSNKGASSVSVSNLNCTFNPLDRLVQAYEEKEKLYERLLKAEK 139 Query: 132 KYRTIEEECMVEQ 144 + E+ + ++ Sbjct: 140 EKVAYLEKLLDKK 152 >gi|260892046|ref|YP_003238143.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260864187|gb|ACX51293.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 81 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 29/75 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R+ G++Q ++ +G+T E+G I++VL + F P Sbjct: 5 LRKARLRAGLTQSEVARLVGLTRASYTNIERGHKNPSVVTALRIAQVLNRSVEELFSDEP 64 Query: 79 TVCSDISSEENNVMD 93 E N MD Sbjct: 65 PAGQAAKREANTTMD 79 >gi|163746698|ref|ZP_02154055.1| transcriptional regulator, putative [Oceanibulbus indolifex HEL-45] gi|161379812|gb|EDQ04224.1| transcriptional regulator, putative [Oceanibulbus indolifex HEL-45] Length = 430 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 47/136 (34%), Gaps = 10/136 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR RR++ G+ Q +L + GI+ + E R+G L +I++ L + Sbjct: 7 GSRIRERRVMAGLKQAELAQQSGISASYLNLIEHNRRRIGGKLLLNIAQALGVEPQALTE 66 Query: 76 VSPTVCSDISSEENNVMDFI--STPDGLQLNRYFIQIDD--VKVRQKIIEL---VRSIVS 128 + E + + F +++I L V ++ Sbjct: 67 GAEAALIAALREAAEDAGLAGPESDRADEFAGRFPGWAKVLATSQRRIDALEQTVEALSD 126 Query: 129 S---EKKYRTIEEECM 141 + + T E + Sbjct: 127 RLAHDPQLATSMHELL 142 >gi|300765733|ref|ZP_07075710.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] gi|300513606|gb|EFK40676.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] Length = 158 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 2/123 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+ R G SQ KL + LG + QV YE+G L I+E + Sbjct: 4 KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYLLGR 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 ++ + + S D ++ Y + V ++ I + + Sbjct: 64 DDNNLAETIAAHIDSN--ASEEDIKEILAYIEEKRKEHVNEEEINITEIASKEDDAVDKF 121 Query: 137 EEE 139 EE Sbjct: 122 VEE 124 >gi|160933196|ref|ZP_02080585.1| hypothetical protein CLOLEP_02041 [Clostridium leptum DSM 753] gi|156868270|gb|EDO61642.1| hypothetical protein CLOLEP_02041 [Clostridium leptum DSM 753] Length = 153 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 40/108 (37%), Gaps = 4/108 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK+++ R ++Q+++ E LGI YE G ++ + + + Sbjct: 15 IRMGKKLKRLRENFNLTQQQVAEALGIDRSTYAYYELGRTTPDLDKIDKLQRLYQVQYQD 74 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY----FIQIDDVKVR 116 + + + + L+ N F Q+++ + R Sbjct: 75 LIEYDEEENRMQLRDSGSDSSPLKKNLYLKTNPKNSDFFYQLNNDEQR 122 >gi|126727400|ref|ZP_01743235.1| hypothetical protein RB2150_09379 [Rhodobacterales bacterium HTCC2150] gi|126703395|gb|EBA02493.1| hypothetical protein RB2150_09379 [Rhodobacterales bacterium HTCC2150] Length = 195 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 30/80 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R + +LG ++ + K E+G L I+ V + FF Sbjct: 15 IGQKIRALRTEKALGLTQLGNHTDLSAGMLSKIERGQVIPTLPTLLRIAMVFGVGLEHFF 74 Query: 75 DVSPTVCSDISSEENNVMDF 94 + +I + + Sbjct: 75 EEGDAPTLEIVRSKERLKMP 94 >gi|170722541|ref|YP_001750229.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169760544|gb|ACA73860.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 129 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 12/112 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R LGM+Q G+ G+ KYE G L ++ + Sbjct: 4 LGPRLREERERLGMTQRVFGDIGGVEPNAQGKYESGERTPRVDYLAALAA-RGVDALYVL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 T S + L F ++ + L+ + Sbjct: 63 SGVRTPAPLESLTADETG----------LVAAFRRLA-ADDKAAFAHLLERL 103 >gi|330447342|ref|ZP_08310991.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491533|dbj|GAA05488.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 213 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 9/127 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ + G+SQ++LGE L + + + G + L+ I+E L + I + Sbjct: 5 ERIKRLAKVQGISQKQLGEALDLQQGTMSRKLSGKYGIEVRELEKIAETLNTSIGYILTG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN--RYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + ++ + +D +T + + + F D + I + R+I ++ Sbjct: 65 QVDTGTQATTTISTELDNAATCTYIPVIHRKDFSAYTDGSSVEVISK--RAIPQHLER-- 120 Query: 135 TIEEECM 141 EEC+ Sbjct: 121 ---EECL 124 >gi|313898421|ref|ZP_07831958.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956803|gb|EFR38434.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 220 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 R M+QE+L + LG++ Q + K+EKG L +S + I Sbjct: 8 EYRKKNMMTQEELADRLGVSRQTITKWEKGTILPSLEYLIDLSRLFGVTIDHLVKDDD 65 >gi|289624831|ref|ZP_06457785.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647732|ref|ZP_06479075.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 2250] Length = 199 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 16 IALDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSM 75 Query: 71 SFFFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FF P + + + + ++D ++L Sbjct: 76 VEFFSEESVPENAAQVVYKASELIDISDGAVTMKLV 111 >gi|238059739|ref|ZP_04604448.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237881550|gb|EEP70378.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 206 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 29/80 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R++ R ++ L + GI+ + + E G+ R +L ++ + Sbjct: 19 AVGPRLKQLRQRREITLADLADETGISTSTLSRLEAGLRRPTLEQLLPLARAYGVSLDEL 78 Query: 74 FDVSPTVCSDISSEENNVMD 93 D T I+ D Sbjct: 79 VDAPATGNPRINLRPIACGD 98 >gi|228975724|ref|ZP_04136261.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228784000|gb|EEM32042.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 142 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 50/135 (37%), Gaps = 4/135 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++Q++L E +G++ + + YE L +++ + Sbjct: 1 MIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 60 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 P E++ LQ + + ++ + L+ ++ Sbjct: 61 LGRSVTDEPNEQVTPKDEKDIAKRMEEIKKDLQGEDGLMFSGEPMSQEAVDSLLDAMEYI 120 Query: 130 EKKYRTIEEECMVEQ 144 K+ + I ++ + ++ Sbjct: 121 VKQTKVINKKYVPKK 135 >gi|224372182|ref|YP_002606554.1| helix-turn-helix protein [Nautilia profundicola AmH] gi|223588476|gb|ACM92212.1| helix-turn-helix protein [Nautilia profundicola AmH] Length = 272 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 31/85 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G++ +L G+ + K E+ + + I+EVL P Sbjct: 1 MTLGEKIKFFRENKGLNLSELASRAGVAKSTLFKIEENKTNPTINTIWAIAEVLGVPFGE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 +S D + Sbjct: 61 LVGEGEIKGEGVSVVLIEKTDEFES 85 >gi|325833014|ref|ZP_08165641.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485731|gb|EGC88196.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 153 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 33/92 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R R G++QE+LG +G ++ E+G + + LE+ Sbjct: 53 LGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSVPDMIKLCRALEADPVELV 112 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 D + SD + + P Sbjct: 113 DTAAFKLSDFPERQQGHARLYAPPPRPAEATA 144 >gi|257792151|ref|YP_003182757.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476048|gb|ACV56368.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 141 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 33/92 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R R G++QE+LG +G ++ E+G + + LE+ Sbjct: 41 LGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSVPDMIKLCRALEADPVELV 100 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 D + SD + + P Sbjct: 101 DTAAFKLSDFPERQQGHARLYAPPPRPAEATA 132 >gi|258508248|ref|YP_003170999.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|257148175|emb|CAR87148.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus GG] gi|259649565|dbj|BAI41727.1| putative transcriptional regulator [Lactobacillus rhamnosus GG] Length = 176 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R G+SQ +L E +GI+ Q + KYE + ++Q + +L + Sbjct: 3 GERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAEPDLQKIQQFTMILGVSYADLLG 62 Query: 76 VSPTVCSDISSEEN 89 P ++ + Sbjct: 63 NEPPEPKPAANRPS 76 >gi|228984922|ref|ZP_04145092.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774872|gb|EEM23268.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 181 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 38/96 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK++ +R G++ ++L + IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKLEKQRKEKGLTSKELAKMADITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEDTNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|194289442|ref|YP_002005349.1| anaerobic benzoate catabolism transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223277|emb|CAQ69282.1| putative transcriptional regulator, ATP-binding kinase, Helix-turn-helix motif, Shikimate kinase motif [Cupriavidus taiwanensis LMG 19424] Length = 315 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 42/97 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P +G+RIR R GMS++ L ++ + + E G L+ ++ L+ Sbjct: 29 DPYLTQLGERIRSLRASRGMSRKDLARGAAVSERYLANLETGTGNASVLLLRQVARALDV 88 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P+ T+ +SE ++ +++ +L R Sbjct: 89 PLPVVLAEVDTLNGQQASEFAQMVQWLAQLPAGELAR 125 >gi|126736476|ref|ZP_01752217.1| DNA-binding protein, putative [Roseobacter sp. CCS2] gi|126714014|gb|EBA10884.1| DNA-binding protein, putative [Roseobacter sp. CCS2] Length = 214 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D +G R+R R + E+ + G+ + K E G L+ ++ LE Sbjct: 31 PLD--LGARVRELRKASNWTLEQAAQQAGLARSTLSKIENGQMSPTYDALKKLAIGLEIS 88 Query: 70 ISFFFD 75 + F Sbjct: 89 VPQLFT 94 >gi|53721509|ref|YP_110494.1| MerR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|126443308|ref|YP_001061732.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 668] gi|126457392|ref|YP_001074677.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1106a] gi|134282910|ref|ZP_01769612.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 305] gi|167921777|ref|ZP_02508868.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei BCC215] gi|226196538|ref|ZP_03792119.1| transcriptional regulator PuuR [Burkholderia pseudomallei Pakistan 9] gi|237509401|ref|ZP_04522116.1| transcriptional regulator PuuR [Burkholderia pseudomallei MSHR346] gi|242312333|ref|ZP_04811350.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106b] gi|254198938|ref|ZP_04905356.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei S13] gi|254265312|ref|ZP_04956177.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1710a] gi|254296722|ref|ZP_04964176.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 406e] gi|52211923|emb|CAH37928.1| putative MerR-family transcriptional regulator [Burkholderia pseudomallei K96243] gi|126222799|gb|ABN86304.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 668] gi|126231160|gb|ABN94573.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106a] gi|134245558|gb|EBA45650.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 305] gi|157806591|gb|EDO83761.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 406e] gi|169657110|gb|EDS88504.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei S13] gi|225931414|gb|EEH27420.1| transcriptional regulator PuuR [Burkholderia pseudomallei Pakistan 9] gi|235001606|gb|EEP51030.1| transcriptional regulator PuuR [Burkholderia pseudomallei MSHR346] gi|242135572|gb|EES21975.1| transcriptional regulator PuuR [Burkholderia pseudomallei 1106b] gi|254216314|gb|EET05699.1| aldehyde dehydrogenase-like protein [Burkholderia pseudomallei 1710a] Length = 183 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 35/91 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V R+R RM G+SQ +L + G+T + E+ L+ + E + ++ F Sbjct: 4 EVATRLRHVRMKYGLSQRELAKRAGVTNGTISLIEQNRVSPSVGSLKKLLECIPMSLAEF 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + S + + + G L Sbjct: 64 FTFEIDENRSVVSRRGEMPNLGNETIGFYLA 94 >gi|258615577|ref|ZP_05713347.1| hypothetical protein EfaeD_07687 [Enterococcus faecium DO] gi|293560245|ref|ZP_06676744.1| transcription regulator [Enterococcus faecium E1162] gi|294620833|ref|ZP_06700037.1| transcription regulator [Enterococcus faecium U0317] gi|314947723|ref|ZP_07851130.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|291599618|gb|EFF30631.1| transcription regulator [Enterococcus faecium U0317] gi|291605789|gb|EFF35224.1| transcription regulator [Enterococcus faecium E1162] gi|295113443|emb|CBL32080.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] gi|313645703|gb|EFS10283.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|315030236|gb|EFT42168.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315144773|gb|EFT88789.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315158696|gb|EFU02713.1| helix-turn-helix protein [Enterococcus faecalis TX0312] Length = 71 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R G+SQ +L + + +T Q V ++ G +++ +SE+L PI+ F Sbjct: 5 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELFSD 64 >gi|229084370|ref|ZP_04216650.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-44] gi|228698910|gb|EEL51615.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-44] Length = 107 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL++P+ Sbjct: 1 MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQTPVDT 60 Query: 73 FFDVSPTVCSDISSE 87 P S + SE Sbjct: 61 LLHDEPAAESQLDSE 75 >gi|111017888|ref|YP_700860.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110817418|gb|ABG92702.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 211 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 32/80 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D + +RIR R+ G S + L ++ + + E G R+ +L I+ L + + Sbjct: 25 LDSVIRQRIRGLRLARGWSLDVLAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTTL 84 Query: 71 SFFFDVSPTVCSDISSEENN 90 + I + + Sbjct: 85 DQLVESVEDEDVVIRPQPEH 104 >gi|315611793|ref|ZP_07886715.1| hypothetical transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|315316208|gb|EFU64238.1| hypothetical transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 228 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 53/126 (42%), Gaps = 28/126 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + +L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSKEKVAQLENILKVARGYF--- 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE--KKYR 134 +++ R + + + + K++ R++ E +K Sbjct: 62 ----------------------TQIEIVRLYNSLSK-QGKDKVVLYARNLAQEEQTQKVA 98 Query: 135 TIEEEC 140 T+ E Sbjct: 99 TMPERL 104 >gi|266621706|ref|ZP_06114641.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288866607|gb|EFC98905.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 291 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R M+QE+L E L ++ Q V K+E G + +L I ++ + Sbjct: 6 NLQVLRKRNNMTQEQLAEQLEVSRQAVSKWESGQSYPEMEKLLIICDMFHCDMDSLVKGD 65 Query: 78 PTVCSDISS 86 T+ + Sbjct: 66 LTLEDQADA 74 >gi|261822660|ref|YP_003260766.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261606673|gb|ACX89159.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 154 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 33/87 (37%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 1 MKKSLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMD 93 + +D+ D Sbjct: 61 SVEPWQLLAPDSSDDTDLELLVPYAAD 87 >gi|251777900|ref|ZP_04820820.1| transcriptional regulator, XRE family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082215|gb|EES48105.1| transcriptional regulator, XRE family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 92 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ R + QE + L I YE G + L+ I+ I F Sbjct: 1 MLGERLKELRDERELKQEDVAAKLNIGRSTYANYETERAEPGIAVLKDIASFYNVSIDFL 60 >gi|238923198|ref|YP_002936713.1| hypothetical protein EUBREC_0793 [Eubacterium rectale ATCC 33656] gi|238925050|ref|YP_002938566.1| hypothetical protein EUBREC_2702 [Eubacterium rectale ATCC 33656] gi|238874872|gb|ACR74579.1| Hypothetical protein EUBREC_0793 [Eubacterium rectale ATCC 33656] gi|238876725|gb|ACR76432.1| Hypothetical protein EUBREC_2702 [Eubacterium rectale ATCC 33656] gi|291530658|emb|CBK96243.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 123 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V ++G+ +++ R M+QE + E +G++ Q V K+E G + S L ++++ + Sbjct: 56 VRKSLGEALKVHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNLFALAKLYGISV 115 Query: 71 SFFF 74 Sbjct: 116 EELL 119 >gi|188584668|ref|YP_001916213.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349355|gb|ACB83625.1| transcriptional regulator, XRE family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 435 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 48/107 (44%), Gaps = 6/107 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R M+QE+L + + EKG+ + L I++ L P+S+F+ Sbjct: 8 IGQKIKRARYEKDMTQEELAGK-DFNRSFLSQIEKGLVKPSDRVLSIIADRLNLPLSYFY 66 Query: 75 -----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 D + ++ N++ + L+L +++ D+ + Sbjct: 67 EPEDPDKDDEQAINALNKARNLIQSNKMDEALELITKSLKLQDISPK 113 >gi|163869336|ref|YP_001610592.1| hypothetical protein Btr_2646 [Bartonella tribocorum CIP 105476] gi|161019039|emb|CAK02597.1| hypothetical protein BT_2646 [Bartonella tribocorum CIP 105476] Length = 176 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 7/143 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQ-EKLGECLGITFQQVQKYEKGVNRVGASRL 59 M ++K P + KR+ R+ LG +Q ++ + L + + YE G+ +S L Sbjct: 1 MARSEKEPK---TELAKRLCEVRLALGFTQRKQFADHLVVPESTMYNYETGLREPPSSML 57 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + +++ + SD++ + + PDG L + +I + R Sbjct: 58 IIYKNICGIDVNWLLTGEGEMFSDMAKAKAVGFKMPTIPDG--LMKKLGRIAYITYRDAK 115 Query: 120 IEL-VRSIVSSEKKYRTIEEECM 141 I+L I + +E + Sbjct: 116 IKLPPEDIAELAAELYKKLQELV 138 >gi|160942838|ref|ZP_02090078.1| hypothetical protein FAEPRAM212_00315 [Faecalibacterium prausnitzii M21/2] gi|158445890|gb|EDP22893.1| hypothetical protein FAEPRAM212_00315 [Faecalibacterium prausnitzii M21/2] Length = 110 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 34/78 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+RIR +R G + E+ E + ++ V E+GV I EVL+ Sbjct: 1 MNTLLGQRIREQRKEKGWTIEQFAERVDLSANYVGDLERGVKIPKLETFIRIVEVLDVSA 60 Query: 71 SFFFDVSPTVCSDISSEE 88 S S ++ +E Sbjct: 61 DVLIRDSVPSASHVADDE 78 >gi|27377331|ref|NP_768860.1| aldehyde dehydrogenase-like protein [Bradyrhizobium japonicum USDA 110] gi|27350474|dbj|BAC47485.1| aldehyde dehydrogenase-like protein [Bradyrhizobium japonicum USDA 110] Length = 182 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++G R+R R +SQ +L + G+T + E L+ I + + + Sbjct: 1 MSVDIGGRLRFIRARQKLSQRELAKRAGVTNSTISLIESNQMNPSVGALKRILDGIPMGL 60 Query: 71 SFFFDVSPTVCSDI 84 + FF + P I Sbjct: 61 AEFFALEPESRRKI 74 >gi|319654086|ref|ZP_08008178.1| hypothetical protein HMPREF1013_04798 [Bacillus sp. 2_A_57_CT2] gi|317394279|gb|EFV75025.1| hypothetical protein HMPREF1013_04798 [Bacillus sp. 2_A_57_CT2] Length = 312 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 14/107 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I+ R + GM Q +L E + + Q+ K EKG +S L I+ L+ +S+FF Sbjct: 7 LGKKIKEIRKVRGMKQYELAEGI-CSQAQISKIEKGQVEPLSSTLYLIANKLDVDVSYFF 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + + L+ + D ++ ++I+E Sbjct: 66 SNIKVKRNGQA-------------HMLEKLKDARSNSDYQLIKQIVE 99 >gi|291521015|emb|CBK79308.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 253 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R ++Q+ L E L ++ + V K+E+G++ L I+++L+ ++ Sbjct: 10 GLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVSVTELLR 69 Query: 76 VSPTVCSDISS 86 Sbjct: 70 GEKIDRQKNID 80 >gi|282866034|ref|ZP_06275082.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559073|gb|EFB64627.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 191 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V KRIR R G S + L ++ + + E G R+ +L I+ L + Sbjct: 7 DLDSLVRKRIRALRAAHGWSLDDLAARCHLSPSTLSRIETGHRRIALDQLTVIARALSTS 66 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFIST 97 + + +P S ++ + + Sbjct: 67 LDQLVEAAPDDVVSHPSYDHARGLTLWS 94 >gi|228943045|ref|ZP_04105546.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955927|ref|ZP_04117864.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228968662|ref|ZP_04129641.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228976622|ref|ZP_04137065.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783091|gb|EEM31227.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791025|gb|EEM38647.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228803754|gb|EEM50436.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816630|gb|EEM62754.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 133 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 13/134 (9%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G+ +R R + G+S LG+ LG+T + +E G L+ +S + Sbjct: 6 DNIFGRNLRNLRNLQGLSLNALGKELGVTGSAISSWELGNKEPNFDMLKKVSGFFQVSTD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVRSI-- 126 + + E + + ++ + I D V+Q++I+ V + Sbjct: 66 YMLNYQVFDDEAQRKE-------VVSQLANEIYERYKNIPDSKKPMVKQELIKYVNYLNF 118 Query: 127 -VSSEKKYRTIEEE 139 ++ + + E Sbjct: 119 TAQADVEELKPDNE 132 >gi|241666493|ref|YP_002984577.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861950|gb|ACS59615.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 227 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 34 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 93 Query: 69 PISFFFDVSPTVCSDI 84 P++ FF + + Sbjct: 94 PLTAFFRRFEEPRNAV 109 >gi|148977326|ref|ZP_01813940.1| transcriptional regulator, XRE family protein [Vibrionales bacterium SWAT-3] gi|145963439|gb|EDK28703.1| transcriptional regulator, XRE family protein [Vibrionales bacterium SWAT-3] Length = 186 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG ++ R G S +K + G++ + + E G + ++L I+ E S Sbjct: 5 IKVGTNLKRLRQEKGWSLDKAAKATGVSKAMLGQIELGESSPTVAKLWQIASGFEVSFSS 64 Query: 73 FFDVSPTVC 81 F S Sbjct: 65 FITESSNNE 73 >gi|89893443|ref|YP_516930.1| hypothetical protein DSY0697 [Desulfitobacterium hafniense Y51] gi|219666722|ref|YP_002457157.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332891|dbj|BAE82486.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536982|gb|ACL18721.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 71 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 30/67 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R ++Q+ L + L ++ +YE G + ++ L ++ ++ + + + Sbjct: 4 QRLRDLREDRDLTQQDLADLLKVSQATYSRYESGALDIPSTSLIKLARFYKTSVDYLLGL 63 Query: 77 SPTVCSD 83 + Sbjct: 64 TNDRKPS 70 >gi|326331111|ref|ZP_08197409.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] gi|325951152|gb|EGD43194.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] Length = 181 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 32/80 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R GM+ +L E ++ + + E+G+ R S L I++ L + Sbjct: 4 LGSRVRELRKAQGMTLVQLAEATDLSHPFLSQIERGMARPSMSSLFRIAQTLGTTQQGLL 63 Query: 75 DVSPTVCSDISSEENNVMDF 94 S S + D Sbjct: 64 ADSVESPSAGPAAVVRRSDP 83 >gi|319652442|ref|ZP_08006558.1| hypothetical protein HMPREF1013_03171 [Bacillus sp. 2_A_57_CT2] gi|317395904|gb|EFV76626.1| hypothetical protein HMPREF1013_03171 [Bacillus sp. 2_A_57_CT2] Length = 181 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K+I+ R+ G + ++L E ++ + + E+G + + L+ I++ L IS F Sbjct: 3 EIYKKIKDLRLQKGYTLKELSERTELSISFLSQVERGATSLAITSLKKIADALNVKISEF 62 Query: 74 FDVS 77 F+ Sbjct: 63 FEDE 66 >gi|254510463|ref|ZP_05122530.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221534174|gb|EEE37162.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 431 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 44/129 (34%), Gaps = 3/129 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR I G+ Q +L +GI+ + E R+G L I+ L S Sbjct: 3 DTLTGSRIRERRQIAGLRQAELARRVGISASYLNLIEHNRRRIGGKVLVDIAAALSVEPS 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 E D + + F + ++ R +VS E+ Sbjct: 63 LLTQGVEETLISALREAAA--DAVGQQAEVDGLEEFAGRF-PGWSGVLAQMHRRVVSLER 119 Query: 132 KYRTIEEEC 140 T+ + Sbjct: 120 TVETLSDRL 128 >gi|212711620|ref|ZP_03319748.1| hypothetical protein PROVALCAL_02695 [Providencia alcalifaciens DSM 30120] gi|212685722|gb|EEB45250.1| hypothetical protein PROVALCAL_02695 [Providencia alcalifaciens DSM 30120] Length = 107 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 5/95 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ KK + + VG RIR R MS ++L + LGI+ Q ++E G R+ L Sbjct: 1 MM--KKNTSKI---VGARIRTLRKDRNMSIQQLSKLLGISQQHQSRHELGEMRIHVDTLY 55 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFI 95 ISE+LE I S + + D + Sbjct: 56 SISEILELDIQELMSDFIDSYSCTCTSDKKEKDNL 90 >gi|199597505|ref|ZP_03210934.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|199591528|gb|EDY99605.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] Length = 176 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R G+SQ +L E +GI+ Q + KYE + ++Q + +L + Sbjct: 3 GERLMQLRKRSGLSQNELAEAMGISRQAISKYENNLAEPDLQKIQQFTMILGVSYADLLG 62 Query: 76 VSPTVCSDISSEEN 89 P ++ + Sbjct: 63 NEPPEPKPAANRPS 76 >gi|169832055|ref|YP_001718037.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] gi|169638899|gb|ACA60405.1| putative prophage repressor [Candidatus Desulforudis audaxviator MP104C] Length = 196 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 26/72 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ IR R G+SQ L G++ Q + E G L+ ++ L+ Sbjct: 4 VGETIRRLREESGLSQRALARKAGLSSQYLSDIEVGRTSPSLKSLEKLAGALQVAPGQLL 63 Query: 75 DVSPTVCSDISS 86 S + Sbjct: 64 QGQDRFSSQVVE 75 >gi|160942173|ref|ZP_02089488.1| hypothetical protein CLOBOL_07061 [Clostridium bolteae ATCC BAA-613] gi|158435064|gb|EDP12831.1| hypothetical protein CLOBOL_07061 [Clostridium bolteae ATCC BAA-613] Length = 204 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 30/74 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ ++Q++L E L ++ + K+E G L+ IS I Sbjct: 5 EKLQQLRIGKNLTQQQLAEQLYVSRTAISKWESGKGYPNIESLKCISRFFSITIDELLSS 64 Query: 77 SPTVCSDISSEENN 90 + + +N Sbjct: 65 EELITLAEAENHSN 78 >gi|121607724|ref|YP_995531.1| anaerobic benzoate catabolism transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121552364|gb|ABM56513.1| transcriptional regulator, XRE family with shikimate kinase activity [Verminephrobacter eiseniae EF01-2] Length = 315 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 3/119 (2%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + NP+ + +G+R+R R G++++ + GI+ + + E G LQ ++ Sbjct: 23 TDEAKNPLLVALGERVRKLRAQRGLTRKAVALAAGISERHLANLEYGTGNASILVLQQVA 82 Query: 64 EVLESPISFF---FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 L ++ F I + + L L+ DD +I Sbjct: 83 GALHCSLAELQGDFTTRSPEWLLIRELLEHRSEPQLRRARLALHALLNGADDPARHSRI 141 >gi|73670284|ref|YP_306299.1| MerR family transcriptional regulator [Methanosarcina barkeri str. Fusaro] gi|72397446|gb|AAZ71719.1| transcriptional regulator, MerR family [Methanosarcina barkeri str. Fusaro] Length = 192 Score = 47.9 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 8/82 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + VG +IR R M+ E+L E + + +Q+ E G + L Sbjct: 1 MSEENR--------VGSKIRQLREAREMTIEELAEASQSSEELIQQLENGALVPSLTPLL 52 Query: 61 HISEVLESPISFFFDVSPTVCS 82 I+ L + F D P Sbjct: 53 KIARALGVRLGTFLDDMPQSGP 74 >gi|307318972|ref|ZP_07598403.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306895386|gb|EFN26141.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] Length = 470 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 9/136 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NK I G R+R R L ++Q + E LGI+ + E+ + L Sbjct: 1 MAENK-------IFAGPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLL 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ V + + + + + + + + P +L V I+ Sbjct: 54 KLASVYKVDLEELQGEAGSGLAQLREVFADPLLAGELPGDQELVEVAEAA--PNVSGGIV 111 Query: 121 ELVRSIVSSEKKYRTI 136 +L R+ + R + Sbjct: 112 KLYRAYREQASRLRDL 127 >gi|291545678|emb|CBL18786.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 166 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 53/133 (39%), Gaps = 10/133 (7%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R GMSQ++L + + +T Q V ++E G L+ +S+ + I+ Sbjct: 7 ILKLRTERGMSQDELADKIMVTRQAVSRWENGDTVPNTDTLKLLSKEFDVSINTLLGEPR 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV------KVRQKIIEL-VRSIVSS-- 129 + + + LN + + ++I++ V+++V+ Sbjct: 67 KLICQCCGMPIDDDSILGRDKDGTLNEEYCKWCYADGTYTYNDMDELIDVCVKNMVNESF 126 Query: 130 -EKKYRTIEEECM 141 E++ RT +E + Sbjct: 127 TEEQARTYLKEML 139 >gi|167768818|ref|ZP_02440871.1| hypothetical protein ANACOL_00135 [Anaerotruncus colihominis DSM 17241] gi|167668990|gb|EDS13120.1| hypothetical protein ANACOL_00135 [Anaerotruncus colihominis DSM 17241] Length = 138 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 12/121 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+R R G +QE+LG+ +G+T + YEK + + + + L +F F Sbjct: 12 KRLREAREKAGFTQEELGKMIGVTGSAITNYEKETSHPKEPIMYALIDALNVEPNFLFQD 71 Query: 77 ----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ--------KIIELVR 124 S ++E D IS + L R I + + II L+ Sbjct: 72 CVHLPQKAKSPGTTEVVPGEDNISLEESNYLLRALGLIQEGQQLSDDDLAFLAHIIGLLE 131 Query: 125 S 125 + Sbjct: 132 A 132 >gi|126348447|emb|CAJ90170.1| putative regulatory protein [Streptomyces ambofaciens ATCC 23877] Length = 191 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 41/116 (35%), Gaps = 9/116 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V VG R+R R ++ L E GI+ + + E G+ R L I++ Sbjct: 3 TADDVLAGVGPRLRQVRKEREVTLAALSETTGISVSTLSRLESGLRRPSLELLLPIAQAH 62 Query: 67 ESPISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + P+ P V + ++ G + F + + R+K Sbjct: 63 QVPLDELVGAPPVGDPRVRAKPIERHGRTHWPLTRQPGG--LQAFKVL---EPRRK 113 >gi|167032895|ref|YP_001668126.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166859383|gb|ABY97790.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 104 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 27/72 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R R + G++Q +L E G + + ++E L ++VL F Sbjct: 5 ALGFALRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDALMEFAQVLGVKPKDF 64 Query: 74 FDVSPTVCSDIS 85 F + Sbjct: 65 FAEPDDEEEQRA 76 >gi|119962680|ref|YP_946768.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119949539|gb|ABM08450.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 213 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 33/89 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R ++ + E GI+ + + E G + L I+ + + P+ Sbjct: 31 AVGPRLRAMRTQRNVTLAEASEATGISVSTLSRLESGQRKPTLELLLPIARLHQVPLEEL 90 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQ 102 D T I + + + P + Sbjct: 91 IDAPETGDPRIHLKPHIHEWGTAVPLTRR 119 >gi|83644480|ref|YP_432915.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83632523|gb|ABC28490.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 192 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 30/80 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ R ++ E+L + ++ + + E+G + L +++ + S Sbjct: 10 LGKRIQQLRKSEKLTLEQLAQQSNVSRSMLSQIERGQANPTFATLWNLTRAMGIEWSELV 69 Query: 75 DVSPTVCSDISSEENNVMDF 94 D S V Sbjct: 70 DESEGVSHSPIEHIIAAQTP 89 >gi|56963615|ref|YP_175346.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56909858|dbj|BAD64385.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 106 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++QE+LGE + +T + YE G L+ +++V + Sbjct: 6 ERLKTLRKERQLTQEQLGELINVTKVSISGYENGNRTPDTDTLRRLADVFGVSTDYLLGR 65 Query: 77 SPTVCSD 83 S Sbjct: 66 SKEKNGS 72 >gi|330718468|ref|ZP_08313068.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 260 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R+ G++Q++L E + ++ Q V +E G N L+ +S + Sbjct: 7 IKRMRLEKGLTQQELAESIHVSRQTVSTWETGKNYPSLEVLRSLSLLFNVSFEQIIFGEK 66 Query: 79 TVCSDISS 86 +D Sbjct: 67 PTMADNKE 74 >gi|326326060|ref|YP_004250869.1| putative Lambda repressor-like, DNA-binding fused with Peptidase S24, S26A, S26B and S26C [Vibrio nigripulchritudo] gi|323669111|emb|CBJ93158.1| putative Lambda repressor-like, DNA-binding fused with Peptidase S24, S26A, S26B and S26C [Vibrio nigripulchritudo] Length = 200 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 39/101 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKR+ R+ G++QE++G G+T V K+E+G +L+ ++ + Sbjct: 6 ELGKRLENLRLGQGLTQEQMGRIAGVTGVTVGKWERGDAVPRDEKLKAVAAHFRVSFEYL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 ++++ V+ L + + Sbjct: 66 RVGFDQTALLSATQQEVVVIPSYRSGEDTLIYDARLLPQQR 106 >gi|261209042|ref|ZP_05923446.1| predicted protein [Enterococcus faecium TC 6] gi|289566563|ref|ZP_06446985.1| predicted protein [Enterococcus faecium D344SRF] gi|294615927|ref|ZP_06695763.1| repressor [Enterococcus faecium E1636] gi|260076954|gb|EEW64677.1| predicted protein [Enterococcus faecium TC 6] gi|289161662|gb|EFD09540.1| predicted protein [Enterococcus faecium D344SRF] gi|291591214|gb|EFF22887.1| repressor [Enterococcus faecium E1636] Length = 250 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G++ E+L + +G T + +YE G + ++ + +S+ Sbjct: 8 QRLKELRAEKGITLEELAKKIGTTKTTLSRYENGERSPKLQLVGLLANYFQVEMSWL--- 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE--LVRSIVSSEKKYR 134 S S + +S+P ++ + + + R +I+ +++ EK+ Sbjct: 65 SGQSDQRNSLNILPIYTQLSSPRQQKVYNFAKNELEEQNRSNVIQGNFGKAVDEDEKQEV 124 Query: 135 TI 136 + Sbjct: 125 SY 126 >gi|229544367|ref|ZP_04433426.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229325506|gb|EEN91182.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 326 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 10/120 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G R++ R G+S + L E I + ++ E+G + +E + Sbjct: 28 ELGNRLKEARKEKGISLDDLQEMTKIQKRYLKNIEEGNYDSMPGKFYVRAFIKQYAEAVG 87 Query: 68 SPISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F+ P + E+ + + S + + + V II ++ Sbjct: 88 LDPETLFEEYQSDIPRTEQEEFPEQLSRVQTSSKRAAPDTVKMMNVLPRILVVAAIIAIL 147 >gi|254486796|ref|ZP_05100001.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] gi|214043665|gb|EEB84303.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] Length = 132 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 11/137 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N+ P G R+ R M+Q L + LG+ ++ +E ++ A+RL Sbjct: 1 MAENEDWYGPDVATFGDRVAAAREHAQMTQAALAKRLGVKQATLRAWEDDLSEPRANRLS 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ +L + + + +++ + L+ R ++ Sbjct: 61 MLAGILGVSMMWLINGEGEGLDAPDDGQSSSETAMDVLTELRDLRAD-----------ML 109 Query: 121 ELVRSIVSSEKKYRTIE 137 + + EK+ R+ Sbjct: 110 KRAEQLGRLEKRLRSAL 126 >gi|197303199|ref|ZP_03168241.1| hypothetical protein RUMLAC_01922 [Ruminococcus lactaris ATCC 29176] gi|197297739|gb|EDY32297.1| hypothetical protein RUMLAC_01922 [Ruminococcus lactaris ATCC 29176] Length = 108 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 46/95 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ +R+ G++QEK E + ++ + + E+G+++V RL ISE I FF Sbjct: 8 LGDRIKTKRISQGITQEKFAEHMDVSVGYISQLERGISKVSLERLVSISEYFNCNIDFFI 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 D + +++ + + + + +Q Sbjct: 68 DGINSNTEHYLAQDFEELYAQLSSHEKNILKILLQ 102 >gi|156934250|ref|YP_001438166.1| DNA-binding transcriptional repressor PuuR [Cronobacter sakazakii ATCC BAA-894] gi|156532504|gb|ABU77330.1| hypothetical protein ESA_02080 [Cronobacter sakazakii ATCC BAA-894] Length = 185 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R LG+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLAQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFA 68 Query: 76 VSPTVCSD 83 Sbjct: 69 EPEKPDEP 76 >gi|81429329|ref|YP_396330.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78610972|emb|CAI56024.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 106 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 38/82 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R ++Q +L + LG++ V YE+G++ L I +L++ + + Sbjct: 7 GERLKAVRKAKRLTQLELSQRLGVSKGTVSAYEQGLSYPSLETLVSICSILDTSADYLLN 66 Query: 76 VSPTVCSDISSEENNVMDFIST 97 +S + + + + I Sbjct: 67 ISDDLPFKMGGLTDEQTESILR 88 >gi|253995592|ref|YP_003047656.1| XRE family transcriptional regulator [Methylotenera mobilis JLW8] gi|253982271|gb|ACT47129.1| transcriptional regulator, XRE family [Methylotenera mobilis JLW8] Length = 114 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 3/110 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +KK + +G+ I RR+ G++Q+++ E LGI ++ V + E+GV RL Sbjct: 2 MTKSKKY---LAEQIGQSIAKRRLAAGLTQDQVSEKLGIGYEAVSRMERGVTIPTVIRLA 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 ++E+ I S D + + +++ +++ D + ++ Sbjct: 59 ELAEIFGCGIQELLIESSDRPDDQAEQIKSMLAKLNSEDRNMILETIQKL 108 >gi|253699290|ref|YP_003020479.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251774140|gb|ACT16721.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 209 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R+ LG++Q++ LGI + E G R + L +S + D Sbjct: 11 GVRIKKARLALGLTQKEFAASLGIVQGFLSGIETGRKRPSDTLLIALSHTFGINAQWLHD 70 Query: 76 VSPTVCSDISSEE 88 S + + + Sbjct: 71 GSGESFKNELAAD 83 >gi|238801890|ref|YP_002925093.1| DNA binding protein [Streptococcus phage 5093] gi|238558576|gb|ACR45906.1| DNA binding protein [Streptococcus phage 5093] Length = 170 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 45/105 (42%), Gaps = 1/105 (0%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD- 75 R++ R + M++ +L E +G+T + +E G + + S + +++ I + Sbjct: 2 NRLKELRELRKMTRVELAEKIGVTKLTILNWEHGTHEIKGSNAKKLADHFGVSIPYLLGY 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + SD+ ++ N D + ++ ++V + I+ Sbjct: 62 DTDNTFSDLVAKINEWADERNLKQADPKIQWMRITEEVGEIRDIL 106 >gi|167904497|ref|ZP_02491702.1| helix-turn-helix domain protein [Burkholderia pseudomallei NCTC 13177] Length = 111 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 51/105 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ I +R+ ++QE + E LGI + V + E+GV RL ++++ E + Sbjct: 1 MVGRAIAKQRIACDLTQEAVAERLGIGLEAVSRMERGVVIPTVVRLFELADIFECDAADL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + + SD +S N ++ +ST D L F ++ R++ Sbjct: 61 LTEASSRSSDQASHLNRLLSRLSTADRTLLLEVFERLSTRLSRRQ 105 >gi|149203629|ref|ZP_01880598.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] gi|149142746|gb|EDM30788.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] Length = 436 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 48/134 (35%), Gaps = 5/134 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+ + +G RIR RR++ GM Q L + GI+ + E R+G L ++E L Sbjct: 1 MPDRL--MIGTRIRERRVLNGMRQSDLAQRAGISPSYLNLIEHNHRRIGGKTLLKLAEAL 58 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + S + E + L F + +L R Sbjct: 59 KVEPSQLTQGAEATLISGLREAA--GKPRNDGPELDRTEEFAG-RYPGWASLLSDLHRRT 115 Query: 127 VSSEKKYRTIEEEC 140 + E+ T+ + Sbjct: 116 QTLERTIETLTDRL 129 >gi|118617359|ref|YP_905691.1| transcriptional regulator [Mycobacterium ulcerans Agy99] gi|118569469|gb|ABL04220.1| transcriptional regulator [Mycobacterium ulcerans Agy99] Length = 180 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 33/83 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E+L + G+T + K E+G + + ++ L+ + F Sbjct: 5 LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFSDES 64 Query: 79 TVCSDISSEENNVMDFISTPDGL 101 + + ++ + S + Sbjct: 65 AHETITADRAHDRLGPQSGRYHV 87 >gi|15485441|emb|CAC67535.1| hypothetical transcriptional regulator [Streptococcus thermophilus] Length = 232 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 57/126 (45%), Gaps = 28/126 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+ + + LGI++Q +E+G+ ++ + ++L+ +F + Sbjct: 5 EKLKARRKELKLTQKDIADQLGISYQAYSAWERGIKEPSKEKVNRLEQLLKVSKGYFTE- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK--KYR 134 +++ R + + + K + +++E R +V EK + Sbjct: 64 ------------------------IEIVRLYNTLSN-KGKNQVVEYARDLVQKEKTRQVM 98 Query: 135 TIEEEC 140 ++ E+ Sbjct: 99 SVSEKL 104 >gi|163942112|ref|YP_001646996.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229013578|ref|ZP_04170711.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] gi|163864309|gb|ABY45368.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228747738|gb|EEL97608.1| Transcriptional regulator, MerR [Bacillus mycoides DSM 2048] Length = 194 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ I+ L P+ + Sbjct: 14 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLEMIANFLNVPLPY 73 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + EE + ++ Sbjct: 74 LLLEQKDRLKIVKKEERKYSVYGKDEQRIEHV 105 >gi|148259560|ref|YP_001233687.1| XRE family transcriptional regulator [Acidiphilium cryptum JF-5] gi|326402766|ref|YP_004282847.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|146401241|gb|ABQ29768.1| putative transcriptional regulator, XRE family [Acidiphilium cryptum JF-5] gi|325049627|dbj|BAJ79965.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 203 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 35/73 (47%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D VG R+R R I G++Q +L G+T + E+G S L+ I + + ++ Sbjct: 22 DAGVGARLRRMRQIFGLTQRELARRAGVTNGAISLIEQGRVSPSISSLKKILDGIPMSLA 81 Query: 72 FFFDVSPTVCSDI 84 FF + T D+ Sbjct: 82 EFFTLDLTAPEDV 94 >gi|311067740|ref|YP_003972663.1| Phage PBSX transcriptional regulator [Bacillus atrophaeus 1942] gi|310868257|gb|ADP31732.1| Phage PBSX transcriptional regulator [Bacillus atrophaeus 1942] Length = 113 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 12/121 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R +QE++ +G++ + YE G + LQ +++ + + Sbjct: 1 MIGGRLKSLRGKK--TQEEIANHIGVSRARYSHYENGRSEPDYETLQKLADYFQVTTDYL 58 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D I + LQ+ ++ + +Q+ IE + + EK Sbjct: 59 LTGKEKKSD----------DDIFSDPDLQIAYRDMRDFSPESKQQAIEFINYLKEKEKNR 108 Query: 134 R 134 + Sbjct: 109 K 109 >gi|311279020|ref|YP_003941251.1| Cupin 2 conserved barrel domain-containing protein [Enterobacter cloacae SCF1] gi|308748215|gb|ADO47967.1| Cupin 2 conserved barrel domain protein [Enterobacter cloacae SCF1] Length = 185 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P GKR+ R LG+SQ + E G+T + E+ S LQ Sbjct: 1 MSDDGLAP-------GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQ 53 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +V +S FF + + ++ +++ S ++L Sbjct: 54 KLLKVYGLSLSEFFAEPEKPDEPQVVINQDELIEIGSQGVSMKLI 98 >gi|210632695|ref|ZP_03297520.1| hypothetical protein COLSTE_01423 [Collinsella stercoris DSM 13279] gi|210159405|gb|EEA90376.1| hypothetical protein COLSTE_01423 [Collinsella stercoris DSM 13279] Length = 320 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 4/102 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ ++ ++ + R M+QE+L LG+T Q V K+E G + RL Sbjct: 1 MMDKERDT----MSFRDNLLYLRDARNMTQEQLAMLLGVTRQAVSKWESGASTPDMDRLV 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + E+ E + T + ++ G Sbjct: 57 RLCEIFEVDLDDLIRGDVTARPVDQALAIPPDTPVTDVTGYD 98 >gi|167646960|ref|YP_001684623.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167349390|gb|ABZ72125.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 474 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 1/132 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R R+ G + + LG++ + + E V A L + V E + Sbjct: 5 LFIGPKLRTLRLAKGWTLDVCAGRLGLSASYLSQIEVNQRPVTARVLIDVMRVFEVDAAS 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 V E GLQ + + + + + + L + +++ Sbjct: 65 LDAVDDHRLIADLREAAADGIQGGVAPGLQELKSAVA-NTPNLARSYLALHHAYRRLDER 123 Query: 133 YRTIEEECMVEQ 144 + EE +++ Sbjct: 124 LKITEEAVSLDE 135 >gi|261207839|ref|ZP_05922524.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289566390|ref|ZP_06446818.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|83940994|gb|ABC48899.1| hypothetical protein [Enterococcus faecium] gi|260078222|gb|EEW65928.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289161828|gb|EFD09700.1| conserved hypothetical protein [Enterococcus faecium D344SRF] Length = 122 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 41/104 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKRI++ R+ +QE + + +G++ Q V E G + V L I+ +L + Sbjct: 6 KAIGKRIKIARIKKNFTQEAVADRIGVSPQHVSNIETGNSSVSLPTLVAIANMLSVSVDE 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + I E + +++ ++ +R Sbjct: 66 LLCDTVLTSKPIFEREAKDIFEDCNEYEVRVLVDVLKATKNSMR 109 >gi|15599272|ref|NP_252766.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107103591|ref|ZP_01367509.1| hypothetical protein PaerPA_01004661 [Pseudomonas aeruginosa PACS2] gi|116052113|ref|YP_789043.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218889643|ref|YP_002438507.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254236965|ref|ZP_04930288.1| hypothetical protein PACG_02989 [Pseudomonas aeruginosa C3719] gi|254242758|ref|ZP_04936080.1| hypothetical protein PA2G_03524 [Pseudomonas aeruginosa 2192] gi|296387366|ref|ZP_06876865.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313109519|ref|ZP_07795473.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9950275|gb|AAG07464.1|AE004823_10 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115587334|gb|ABJ13349.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126168896|gb|EAZ54407.1| hypothetical protein PACG_02989 [Pseudomonas aeruginosa C3719] gi|126196136|gb|EAZ60199.1| hypothetical protein PA2G_03524 [Pseudomonas aeruginosa 2192] gi|218769866|emb|CAW25626.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310881975|gb|EFQ40569.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 68 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 22/66 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G SQ +L L ++ Q V E G ++ V I FD Sbjct: 3 NRVRELRAERGWSQAELAGKLEVSRQTVNAIETGRYDPSLPLAFKLARVFGLAIEAIFDD 62 Query: 77 SPTVCS 82 Sbjct: 63 REGQLD 68 >gi|328886799|emb|CCA60038.1| Transcriptional regulator, MerR family [Streptomyces venezuelae ATCC 10712] Length = 189 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P I VG+ IR R G+S L G++ + + E+G+ S + I+E L+ Sbjct: 6 PTPEAIEVGRVIRSCRKQRGVSMAVLAARSGLSQPFLSQLERGLATPSLSSIYRIAEALD 65 Query: 68 SPISFFF 74 F Sbjct: 66 VTPGTFL 72 >gi|291517925|emb|CBK73146.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 97 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 38/79 (48%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +GK I+ R+ G +Q+++ LG+T + V K+E G + + ++ IS L ++ Sbjct: 3 NEKIGKLIKNARLSKGYTQKEIANKLGVTDKAVSKWECGKSFPDITMIESISRELGISVN 62 Query: 72 FFFDVSPTVCSDISSEENN 90 V+ + E N Sbjct: 63 QLVGVADNSKEEAVMLEKN 81 >gi|258513952|ref|YP_003190174.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257777657|gb|ACV61551.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 71 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R M+Q+ L + +G+ Q + EKG + I ++L + F Sbjct: 6 RIKAARAAKDMTQKDLADAVGVARQTMNAIEKGDYNPSINLCISICKILGKTLDQLFWED 65 Query: 78 PTVCS 82 + Sbjct: 66 DEYEN 70 >gi|119509672|ref|ZP_01628818.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Nodularia spumigena CCY9414] gi|119465691|gb|EAW46582.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [Nodularia spumigena CCY9414] Length = 379 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 40/110 (36%), Gaps = 8/110 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R+ LGMSQ+ L +T Q + E G + +++ L + F + Sbjct: 9 NKLKQTRIRLGMSQQDLANLANVTRQTISGVESGQYAPSTTIALRLAKALGCQVEDLFWL 68 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNR------YFIQIDDVKVRQKII 120 + ++ NV + L L + I R ++I Sbjct: 69 EQDLPEIAATPAYNV--PLGQRLRLILAQVGNQWIAHPLIGQNAFRTEMI 116 >gi|9630190|ref|NP_046617.1| putative SPbeta phage repressor [Bacillus phage SPBc2] gi|16079161|ref|NP_389985.1| Xre family transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221310009|ref|ZP_03591856.1| hypothetical protein Bsubs1_11581 [Bacillus subtilis subsp. subtilis str. 168] gi|221314331|ref|ZP_03596136.1| hypothetical protein BsubsN3_11502 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319253|ref|ZP_03600547.1| hypothetical protein BsubsJ_11428 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323529|ref|ZP_03604823.1| hypothetical protein BsubsS_11557 [Bacillus subtilis subsp. subtilis str. SMY] gi|81342058|sp|O31943|YONR_BACSU RecName: Full=SPBc2 prophage-derived uncharacterized HTH-type transcriptional regulator yonR gi|2634522|emb|CAB14020.1| putative transcriptional regulator (Xre family); phage SPbeta [Bacillus subtilis subsp. subtilis str. 168] gi|3025543|gb|AAC13038.1| putative SPbeta phage repressor [Bacillus phage SPbeta] Length = 108 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 9/109 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R G SQ+++ + LGIT Q KYE G L +S +L F Sbjct: 3 GERLKKCRTSKGYSQQRMADFLGITRQGYGKYEIGKAEPDLKTLTKLSNILGVSTDFLLK 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + ++ + ++ P+ L + Y I + + ++ + L++ Sbjct: 63 G--------THAQFDLDEILNDPETL-IAGYNGMISEEQAKELLYYLLK 102 >gi|332982996|ref|YP_004464437.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332700674|gb|AEE97615.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 222 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 12/128 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R ++ L + GI+ + E G + RL ++EVL + +S+ Sbjct: 1 MSVGERLKQLRQQRKLTLRDLSQKAGISISFLSDIENGRSNPSLKRLSELAEVLGTTVSY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFI------------STPDGLQLNRYFIQIDDVKVRQKII 120 ++ + + + T + L L+ + + RQ I Sbjct: 61 LLGEDEPNIVSDNNTAMEIANRLKELRKQRKWSVAETAEKLGLSEQYYHDLEEGNRQPDI 120 Query: 121 ELVRSIVS 128 +L + + Sbjct: 121 KLTKKLAD 128 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 28/79 (35%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + + R++ R S + E LG++ Q E+G + + ++++ Sbjct: 73 NNTAMEIANRLKELRKQRKWSVAETAEKLGLSEQYYHDLEEGNRQPDIKLTKKLADIFNV 132 Query: 69 PISFFFDVSPTVCSDISSE 87 + S I E Sbjct: 133 SADYLIGRINVPNSYIPEE 151 >gi|312868622|ref|ZP_07728816.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311095831|gb|EFQ54081.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 68 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R GMSQ +LG +G++ Q + YE + + ++ L ++ Sbjct: 3 NRIRECRKAAGMSQAELGNIVGLSRQAISLYEINLRMPTFEMWECLASALHVSPAYLVGW 62 Query: 77 SPTVCS 82 S Sbjct: 63 SDEKGQ 68 >gi|284098554|ref|ZP_06385940.1| molybdenum-binding protein [Candidatus Poribacteria sp. WGA-A3] gi|283830492|gb|EFC34683.1| molybdenum-binding protein [Candidatus Poribacteria sp. WGA-A3] Length = 399 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R+ G+SQ ++ E GIT Q + EK G H+++ L + + F + Sbjct: 12 NRLREMRIAAGLSQGEVAESAGITRQALYAMEKDQYLPGTEVALHLADALGTSVEDLFSL 71 Query: 77 SPTVCSDISSEENNVMDFIST 97 + + +++ Sbjct: 72 NEGRDVLEAELPAGHPGVLNS 92 >gi|254719904|ref|ZP_05181715.1| hypothetical protein Bru83_10224 [Brucella sp. 83/13] gi|265984912|ref|ZP_06097647.1| transcriptional regulatory protein [Brucella sp. 83/13] gi|264663504|gb|EEZ33765.1| transcriptional regulatory protein [Brucella sp. 83/13] Length = 75 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 24/69 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ R G++QE + G + Q + E+G L +++ L F Sbjct: 7 VGRNFARLRREKGLTQEDVEARSGFSQQYLSGLEQGRRNPTVITLYELAQALGVSHVELF 66 Query: 75 DVSPTVCSD 83 S Sbjct: 67 KPDEKSESS 75 >gi|251811353|ref|ZP_04825826.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|251805102|gb|EES57759.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] Length = 189 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NV +I+ R G SQE L E + ++ Q + +E + +L + ++ + + Sbjct: 1 MNVSNQIKKFRERDGYSQEFLAEKMFVSRQTISNWENDKSYPDIHKLLIMCQLFKIYLDE 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGL 101 + I E + + P L Sbjct: 61 LVEDDLKNGQIKSIKKELDFWTCMMIIPIVL 91 >gi|209886139|ref|YP_002289996.1| DNA-binding protein [Oligotropha carboxidovorans OM5] gi|209874335|gb|ACI94131.1| DNA-binding protein [Oligotropha carboxidovorans OM5] Length = 485 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 2/120 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R L +SQ ++ E LG++ + E+ V A L ++E + + Sbjct: 11 LFVGPRFRRLRKQLNLSQTQIAEGLGLSPSYINLIERNQRPVTAQMLLRLAETYDLDLRD 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSE 130 +E + F Q R ++ Q++ E Sbjct: 71 LATSDEDRFFAELNEIFSDPLFRQIDLPKQELRDLAELCPGVTHALQRVYAAYTEARRGE 130 >gi|160887304|ref|ZP_02068307.1| hypothetical protein BACOVA_05322 [Bacteroides ovatus ATCC 8483] gi|255690853|ref|ZP_05414528.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] gi|156107715|gb|EDO09460.1| hypothetical protein BACOVA_05322 [Bacteroides ovatus ATCC 8483] gi|260623485|gb|EEX46356.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] gi|295087085|emb|CBK68608.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 135 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +VG+ ++ R+ LGM QE L LG+ QQV + + L+ I+EVL Sbjct: 12 RHVGRNLQRIRVYLGMKQEALAADLGVN-QQVISKIEKQEEIEEGFLKRIAEVLGISEEV 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D + N IS + + + + +KI+EL ++ SE+ Sbjct: 71 IKDFDVEKTIFNINHHNYKDANIS-----EGATTYAIVQQINPLEKIVELYERLLKSEQD 125 Query: 133 YRTIEEECMV 142 I ++ M Sbjct: 126 KIEILKKYMK 135 >gi|126442387|ref|YP_001062902.1| XRE family transcriptional regulator [Burkholderia pseudomallei 668] gi|126221878|gb|ABN85383.1| transcriptional regulator, XRE family [Burkholderia pseudomallei 668] Length = 94 Score = 47.5 bits (111), Expect = 5e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 24/69 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R SQE+L E G+ V + E+G + ++ PI+ Sbjct: 9 GAAIRQLREARAWSQEQLAEHPGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLLS 68 Query: 76 VSPTVCSDI 84 + Sbjct: 69 PAGDAGPPP 77 >gi|325262373|ref|ZP_08129110.1| transcriptional regulator [Clostridium sp. D5] gi|324032205|gb|EGB93483.1| transcriptional regulator [Clostridium sp. D5] Length = 140 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 12/122 (9%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N+K +G +R RM + E+L + +G++ Q V K+E + + Sbjct: 1 MKNRKGT------IGNTLRCLRMKHKYTMEELAKVIGVSRQSVAKWENNESLPDLLKCSD 54 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ + + + S S+ S ++ + I + QI K + + + Sbjct: 55 LANLYGITVDAIINGSFADNSEESEDDGKYIFGIVS------VGERGQISLPKKSRIVFD 108 Query: 122 LV 123 + Sbjct: 109 IH 110 >gi|291544357|emb|CBL17466.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 112 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 37/99 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R + M+QE+L E ++ + E+G L I+++L + Sbjct: 9 AIGDRIRRYRELSRMTQEQLSELCSLSTGYIGHLERGTRSPSLETLAKIAQLLRVSLDDL 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + +++ +D + + + D Sbjct: 69 VFGEAEIHNNMIKILALTLDDKNPEKVKVFLKTVCALAD 107 >gi|238922230|ref|YP_002935744.1| hypothetical protein EUBELI_20465 [Eubacterium eligens ATCC 27750] gi|238873902|gb|ACR73610.1| Hypothetical protein EUBELI_20465 [Eubacterium eligens ATCC 27750] Length = 110 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 41/118 (34%), Gaps = 16/118 (13%) Query: 10 PVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D +GK+++ R+ G+ Q+ + + + E +V L +I L Sbjct: 7 DIDFESIGKKLKEIRLSKGLPQDAVASVAEVNTSHISNIENNRVKVSLPTLIYICNALGV 66 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + ++ + D + +++++ +VR++ Sbjct: 67 TVDYVLSGEYASDDSAID--------------REIMKELQSFSDDE-KERVLRVVRAL 109 >gi|254512810|ref|ZP_05124876.1| regulator of the anaerobic catobolism of benzoate BzdR [Rhodobacteraceae bacterium KLH11] gi|221532809|gb|EEE35804.1| regulator of the anaerobic catobolism of benzoate BzdR [Rhodobacteraceae bacterium KLH11] Length = 306 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/141 (16%), Positives = 54/141 (38%), Gaps = 20/141 (14%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 ++ + + I VG R+R R G+S+ L E G++ + + + E G + L+ Sbjct: 18 SEMERAISALMIQVGTRVRNARERKGISRRILSESSGVSQRYLAQLEAGTGNISIGLLKR 77 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ L+ I +F L++ F + D + R+ +++ Sbjct: 78 VAHSLDHKIEWFVGEEDP----------------WNSTSLRVAELF-SMADSETREVVLQ 120 Query: 122 LVRSIVSSEKKYRTIEEECMV 142 ++ + E C++ Sbjct: 121 ---ALAKGGTQSGHAERICLI 138 >gi|153003797|ref|YP_001378122.1| XRE family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027370|gb|ABS25138.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. Fw109-5] Length = 224 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 3/108 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R G+S E+L G++ + + E G + + L IS L P S Sbjct: 44 VGANLRRLRNQRGLSLERLSHLSGVSRAMLGQIELGQSAPTINVLWKISSALGVPFSALI 103 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + + + DG +R D+ + R + EL Sbjct: 104 TARGSPGPHVLR--AEQAKLLRSNDGSFSSRALFPFDEPR-RVEFYEL 148 >gi|89892828|ref|YP_516315.1| hypothetical protein DSY0082 [Desulfitobacterium hafniense Y51] gi|89332276|dbj|BAE81871.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 68 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++R+ R G++Q++LGE +G++ Q + E G ++++ + I F Sbjct: 3 NKVRILREEWGLTQKELGEKVGVSRQAINAIETGKFDPSLWLAYDLAKLFKVSIEELF 60 >gi|25027261|ref|NP_737315.1| hypothetical protein CE0705 [Corynebacterium efficiens YS-314] gi|23492542|dbj|BAC17515.1| hypothetical protein [Corynebacterium efficiens YS-314] Length = 169 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 6/110 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVLES 68 +G R+R R I G SQE+L E + ++ + E+ N S + +S L+ Sbjct: 54 LGARVREIRKIRGYSQEELAEIVNMSRNAISNLERNENNNGKPGDPRLSTVYKLSWALDV 113 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 P + I +E+ +D ++ R+ Sbjct: 114 PPAALLPAVGEKPQGICVDESLPVDVRWPAPRDEVLFDVPLTPPEHPRRA 163 >gi|325971904|ref|YP_004248095.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324027142|gb|ADY13901.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 190 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 2/75 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + NP +GK I+ R ++ L E G++ + + E + + I+ L Sbjct: 1 MENP--PMIGKNIQRIRNSRKLTLNVLSERSGVSKAMLSQIESDKVNPTVATVWKIARGL 58 Query: 67 ESPISFFFDVSPTVC 81 ++ D Sbjct: 59 NVELNDLLDTDDQPK 73 >gi|311279146|ref|YP_003941377.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308748341|gb|ADO48093.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 129 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 13/122 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ R +SQ +L + T +V YE GV +G ++ +L++ SF Sbjct: 8 IGERLKALRESKNLSQAQLSKLCGWATASRVGNYELGVRNIGVDDAVVLARILDTSPSFL 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + E+ ++ + F Q+ + + + ++I+L + +Y Sbjct: 68 LFGDEVSQGNELPEKQ-----------RRMLKLFTQLPESE-QDRMIDLFEVRLKEIDEY 115 Query: 134 RT 135 Sbjct: 116 VE 117 >gi|302875482|ref|YP_003844115.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307689097|ref|ZP_07631543.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578339|gb|ADL52351.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 132 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 8/128 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I+ R + G+S L I+ + E G + I+E L ++ Sbjct: 1 MNIGEKIKQYRNLAGLSIRVLAAKADISKSTLGDIENGKTNTSVKTITSIAEALNVDVNI 60 Query: 73 FF-----DVSPTVCSDISSEENNVMDFISTPDGL---QLNRYFIQIDDVKVRQKIIELVR 124 D + T I + + ++ P + ++ +I Q ++ Sbjct: 61 LMNAEATDDNETPLPKILDVKTAMDLILAQPGLMLNGEMLSNDSKIALANALQLGLQYAE 120 Query: 125 SIVSSEKK 132 + EK+ Sbjct: 121 QMQKKEKE 128 >gi|241895618|ref|ZP_04782914.1| conserved hypothetical protein [Weissella paramesenteroides ATCC 33313] gi|241871196|gb|EER74947.1| conserved hypothetical protein [Weissella paramesenteroides ATCC 33313] Length = 68 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R GM Q++ + L I YE+G L +++ + + + Sbjct: 2 RLKELRKGKGMQQQEAAKELNIPGSTYAGYERGEREPRIDMLIKLADYFDVSVDYLIGHE 61 Query: 78 PTV 80 T Sbjct: 62 KTP 64 >gi|268591417|ref|ZP_06125638.1| putative transcriptional regulatory protein [Providencia rettgeri DSM 1131] gi|291313069|gb|EFE53522.1| putative transcriptional regulatory protein [Providencia rettgeri DSM 1131] Length = 185 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + ++I +G++IRL R +S +L GI+ + K E G + L+ I+ L Sbjct: 1 MDKKINIKIGQKIRLLRQARDLSLNELSRISGISKAALSKLESGDSNPRIDTLESIAIAL 60 Query: 67 ESPISFFFD 75 P+S F Sbjct: 61 RFPLSDLFT 69 >gi|255280904|ref|ZP_05345459.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255268352|gb|EET61557.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 169 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + I+ R G+SQ++L L + Q V K+E+G++ + L +SEVLE+P+S Sbjct: 1 MLSENIKAIRKSKGLSQQELAVRLNVVRQTVSKWEQGLSVPDSDVLISLSEVLETPVSTL 60 Query: 74 FDV 76 Sbjct: 61 LGE 63 >gi|253702047|ref|YP_003023236.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251776897|gb|ACT19478.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 199 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 2/122 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K ++ +G+++R R ++ + L + G++ + + E + L Sbjct: 1 MQEKIKQEIREMKLGEKVRGLRQEQRLTLQALADMTGLSKPLLSQIENDQVTPPIATLLK 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR--YFIQIDDVKVRQKI 119 I++ L+ I +FF+ + + + G + + Y + +RQK Sbjct: 61 IAKGLKVGIHYFFEEAGDRKKFMLTRGEQSPLGSQRRPGKENIQHGYMYKPLAPGMRQKK 120 Query: 120 IE 121 +E Sbjct: 121 VE 122 >gi|86157299|ref|YP_464084.1| transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773810|gb|ABC80647.1| transcriptional regulator, XRE family with cupin sensor domain protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 192 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K PV VG +R R +S EKL + G++ + + E G + + L Sbjct: 1 MAPAGKDLTPV---VGTNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLW 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 IS L P S + +S+ DG +R D+ + R + Sbjct: 58 KISSALGVPFSALIT--ARSSGGLHVLRAEHAKVLSSHDGSYSSRALFPFDEPR-RVEFY 114 Query: 121 EL 122 EL Sbjct: 115 EL 116 >gi|23098799|ref|NP_692265.1| hypothetical protein OB1344 [Oceanobacillus iheyensis HTE831] gi|22777026|dbj|BAC13300.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 189 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 10 PVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 P+D+ +G +I+ R+ +Q+++ + GI+ + K E G + L IS+ L+ Sbjct: 3 PIDLQSIGDKIKQVRLRNKKTQQQIADECGISKSLLSKIENGQTASAIATLSKISDALKV 62 Query: 69 PISFFFDVSPTVC 81 P+++ D Sbjct: 63 PLAWLLDDKEEQD 75 >gi|116618839|ref|YP_819210.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097686|gb|ABJ62837.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 129 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 3/122 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFFF 74 G++I+ R + + + + + E G L I++ L Sbjct: 8 GQKIKHIREKKHYTVRQAALQGNFSSAYLSQIENGNKNIPKVETLYRIAKGLRISKDEIL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVRSIVSSEKKY 133 ++ S + N +D L F + R+ I+ ++R++ ++K Sbjct: 68 HIAGITSH-TSPKHPNSVDLGKQFADDDLLLSFEGKPLSPEYREAILSILRTLPDVDEKT 126 Query: 134 RT 135 + Sbjct: 127 KE 128 >gi|323483371|ref|ZP_08088759.1| hypothetical protein HMPREF9474_00508 [Clostridium symbiosum WAL-14163] gi|323403225|gb|EGA95535.1| hypothetical protein HMPREF9474_00508 [Clostridium symbiosum WAL-14163] Length = 130 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+RL R G +QE + + +G T Q +YE + L ++S + Sbjct: 4 LGERLRLLREKNGKTQEDISKVIGTTQQIYSRYETNKTELPVRHLLNLSSYYNVSTDYLL 63 >gi|322516069|ref|ZP_08069006.1| XRE family transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322125484|gb|EFX96830.1| XRE family transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 233 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 9/86 (10%), Positives = 33/86 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R M+Q +L + + ++ + + ++EK + A++ + ++++ + + Sbjct: 28 SKLRKLRKAKNMTQSELAKKIKVSEKTISRWEKDKTLMKANKAKELADLFGVSVGYLLGY 87 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 + L+ Sbjct: 88 IDDSEIYDDEVVIEPEKGMILAYSLE 113 >gi|317499839|ref|ZP_07958077.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|316898741|gb|EFV20774.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] Length = 102 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 4/93 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R+ G+SQ+++ E +G+ YE G + ++ I++VL + Sbjct: 7 ENLKEARIKSGLSQKEVSENIGVAKSTYSLYESGNREPNVNTIKKIADVLNVSADTLLGI 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + T D L R F + Sbjct: 67 DEEPT----TMAAHFDGDEYTEDELDEIRQFAE 95 >gi|291560882|emb|CBL39682.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 253 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R ++Q+ L E L ++ + V K+E+G++ L I+++L+ ++ Sbjct: 10 GLFVTELRKEKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELLR 69 Query: 76 VSPTVCSDISS 86 Sbjct: 70 GEKIDTQKNID 80 >gi|268611917|ref|ZP_06145644.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 102 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 14/111 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G S KL + G++ + EK +N+ LQ + + ++ FF+ Sbjct: 4 GTRLREIRKAKGFSMYKLHKESGLSQGHISDLEKCINQPTIETLQKLLTPMGVTLAEFFN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 V I T +L F + + K +++++++ Sbjct: 64 EDGEVS-------------ILTDTEKELVAGFRTLPEDKA-DLALQMIKAL 100 >gi|256377491|ref|YP_003101151.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921794|gb|ACU37305.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 192 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 27/72 (37%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V VG+R+R R G + L E GI+ + + E G R L I+ Sbjct: 1 MDEDVLGQVGERLRALRASRGATLADLAEVTGISKSTLSRLESGQRRPSLELLLPIARAH 60 Query: 67 ESPISFFFDVSP 78 P+ P Sbjct: 61 RVPLDELVGAPP 72 >gi|251810407|ref|ZP_04824880.1| phage repressor protein [Staphylococcus epidermidis BCM-HMP0060] gi|251806011|gb|EES58668.1| phage repressor protein [Staphylococcus epidermidis BCM-HMP0060] Length = 240 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 11/75 (14%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQK-----------YEKGVNRVGASRLQHISE 64 G RIR R G++ ++L + L F K +E + A + ++ Sbjct: 20 GDRIRKLRKQKGLTLQQLSDELHEQFPAKDKKNSFTKGKLSNWENDKSEPIAKTVSQLAT 79 Query: 65 VLESPISFFFDVSPT 79 + + + Sbjct: 80 YFGVSMDYLIGLEDD 94 >gi|133919924|emb|CAM12484.1| hypothetical protein [uncultured bacterium] Length = 136 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 54/124 (43%), Gaps = 3/124 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFFF 74 G++++ R LG++Q++L E +G+T + + YE +R + ++ L +++ Sbjct: 4 GEKVKAERTKLGLNQDELAEKIGVTRRVICSYENDKSRPRGTERYKKLAGALNVNVNYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIELVRSIVSSEKK 132 +D+ + + ++ F ++ D +R+ + + + + ++K Sbjct: 64 SEDDAFIADVEDKYGRRGARQAQELLAEVTGLFAGGEMADEDMREMVDAIQEAYLIAKKN 123 Query: 133 YRTI 136 + Sbjct: 124 NKKY 127 >gi|83719318|ref|YP_441974.1| DNA-binding protein [Burkholderia thailandensis E264] gi|257138149|ref|ZP_05586411.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83653143|gb|ABC37206.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 192 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 1/101 (0%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DVNQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLASALGVS 61 Query: 70 ISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 I+ F+ ++E+ D S L+ Sbjct: 62 IASLFERDRAASPLSRAAEQPVWKDPASGYVRRSLSPAAPS 102 >gi|75676148|ref|YP_318569.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74421018|gb|ABA05217.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 410 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 13/116 (11%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D +G R+R R G+SQ+ + E LG+ V E G V L ++++ Sbjct: 2 IDAAQLGDRLRAARERRGLSQQAVAEALGLPRTAVTNMESGTRSVSTLELTRLADLYGQQ 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 +FF + + + +P D +VR+ I++L + Sbjct: 62 ATFFLSMHEEAEDLSIVLHRALPEMAGSPH-----------LDGEVRR-ILDLYQE 105 >gi|83954282|ref|ZP_00963002.1| transcriptional regulator, putative [Sulfitobacter sp. NAS-14.1] gi|83841319|gb|EAP80489.1| transcriptional regulator, putative [Sulfitobacter sp. NAS-14.1] Length = 431 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 4/128 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR++ G Q L + +GI+ + E R+G L +I+ L + Sbjct: 4 DALTGSRIRERRVMAGQKQADLAKRIGISASYLNLIEHNRRRIGGKLLLNIAAALGVEPT 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGL--QLNRYFIQIDD--VKVRQKIIELVRSIV 127 + + E + + F D +++I L R++ Sbjct: 64 ALTEGAEAALIATLREAADDARLSGPEATRADEFAGRFPGWADVLANAQRRIATLERTVE 123 Query: 128 SSEKKYRT 135 + + Sbjct: 124 TLTDRLAH 131 >gi|237713190|ref|ZP_04543671.1| transcriptional regulator [Bacteroides sp. D1] gi|262409417|ref|ZP_06085959.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647376|ref|ZP_06724969.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294809002|ref|ZP_06767724.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] gi|229446848|gb|EEO52639.1| transcriptional regulator [Bacteroides sp. D1] gi|262352629|gb|EEZ01727.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292637335|gb|EFF55760.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294443727|gb|EFG12472.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] Length = 135 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 6/130 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +VG+ ++ R+ LGM QE L LG+ QQV + + L+ I+EVL Sbjct: 12 RHVGRNLQRIRVYLGMKQEALAADLGVN-QQVISKIEKQEEIEEGFLKRIAEVLGISEEV 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D + N IS + + + + +KI+EL ++ SE+ Sbjct: 71 IKDFDVEKTIFNINHHNYKDANIS-----EGATTYAIVQQINPLEKIVELYERLLKSEQD 125 Query: 133 YRTIEEECMV 142 I ++ M Sbjct: 126 KIEILKKHMK 135 >gi|328954674|ref|YP_004372007.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328454998|gb|AEB06192.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 204 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 29/77 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG IR R L +SQ+ L + ++ Q + +E L +S V ++ + Sbjct: 1 MQVGAHIREHRARLALSQDDLAARIYVSRQTISNWENDKTYPDVQSLLLLSAVFDATVDE 60 Query: 73 FFDVSPTVCSDISSEEN 89 +E+ Sbjct: 61 LIKGDVDAMDKTVNEDA 77 >gi|327461171|gb|EGF07504.1| hypothetical protein HMPREF9394_1037 [Streptococcus sanguinis SK1057] Length = 523 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 30/60 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++ +R+ +G++Q+ + + L I+ Q + +E G + L +++LE Sbjct: 1 MIGNFLKQKRLAMGLTQDFVAKQLNISRQAISNWENGSRDINIRDLIAYAKILEISFEDL 60 >gi|300174082|ref|YP_003773248.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888461|emb|CBL92429.1| Transcription regulator [Leuconostoc gasicomitatum LMG 18811] Length = 204 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 25/62 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R+ ++Q+++ + +T Q + +E + L ++S+ + Sbjct: 4 GNHLKNVRLQKNLTQDQVAKDFFVTRQTISSWENEKTYPDITNLINLSDYYHISLDTLLK 63 Query: 76 VS 77 Sbjct: 64 ED 65 >gi|295108150|emb|CBL22103.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 110 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/102 (11%), Positives = 36/102 (35%), Gaps = 1/102 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G R+R R G+SQ+++ + ++ + +YE L + + + + Sbjct: 1 MEFGNRLRKLRNQNGLSQKEVAIAISVSVNAISQYETNKRFPEPDVLVRLCKYYKISADY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + + +S + L+ ++ + Sbjct: 61 LL-GLTEQQRSPQTTGEVLENTLSREQHVILDELIKMLNKEE 101 >gi|294499973|ref|YP_003563673.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|295705350|ref|YP_003598425.1| DNA-binding protein [Bacillus megaterium DSM 319] gi|294349910|gb|ADE70239.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|294803009|gb|ADF40075.1| DNA-binding protein [Bacillus megaterium DSM 319] Length = 183 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 51/136 (37%), Gaps = 3/136 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + + K + R ++ +++ E G++ + + EKG + + L I+ L+ Sbjct: 2 DAIQDIIAKNLVKLRKNRNLTLDQVSELTGVSKAMLAQIEKGKSSPTVTTLWKIANGLQV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 S F D+ +D I+ G L F K + I ++ Sbjct: 62 SFSVFM---KEDTPDVQKVSIKQLDPITDNKGDYLVYSFFPYHPEKKFEIYIVTLKPGCV 118 Query: 129 SEKKYRTIEEECMVEQ 144 E K +E ++++ Sbjct: 119 HEAKTHLGDEYLLIKE 134 >gi|294624392|ref|ZP_06703085.1| XRE family transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601307|gb|EFF45351.1| XRE family transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 105 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 34/85 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG+ IRL R G+SQ + + + E S + I+E L P+ Sbjct: 1 MNVGQAIRLCRTQRGVSQSAIASRANCSVSYLSMLENNKRDPTLSTVTQIAEALRVPVGL 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 F ++ + +EN + + Sbjct: 61 LFVLAADQNELGAIDENVADQLMQS 85 >gi|288962615|ref|YP_003452909.1| transcriptional regulator [Azospirillum sp. B510] gi|288914881|dbj|BAI76365.1| transcriptional regulator [Azospirillum sp. B510] Length = 118 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 36/84 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GKR+R R +SQE + + + + V E+G L +S L Sbjct: 1 MSDDLKRRIGKRLRALRESRALSQEDVAAAIDRSVETVSNIERGRVLAALETLDRLSRRL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENN 90 + P+ FFD V S + + Sbjct: 61 DVPLVDFFDDGEAVVSPARAATDM 84 >gi|169346977|ref|ZP_02865925.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169297036|gb|EDS79160.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] Length = 180 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R ++Q+ L E GI+ + E ++ ++ L+ + Sbjct: 1 MFIGYRLQKLRKKRKLTQKALAEMTGISRSYLSDIEHNRYNPSFDTIEALATALKLDLKS 60 Query: 73 FFDV 76 FFD Sbjct: 61 FFDD 64 >gi|241207203|ref|YP_002978299.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861093|gb|ACS58760.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 188 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 1/91 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + ++ +G RIR R ++ + L G++ + + E+ AS L I L Sbjct: 1 MEPELEQAIGIRIRTLRQEKALTLDDLAAASGVSRAMISRIERAEASPTASLLARICAAL 60 Query: 67 ESPISFFF-DVSPTVCSDISSEENNVMDFIS 96 +S FF + E+ D + Sbjct: 61 GLSLSAFFAEDGQASPLARRQEQQVWRDPET 91 >gi|116695934|ref|YP_841510.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113530433|emb|CAJ96780.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 199 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 50/131 (38%), Gaps = 6/131 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R+ R + G++ E+L + +T + K E+G++ + ++E L+ + Sbjct: 16 IAERLAALRKLNGLTLEELAQRASLTKSYLSKLERGLSSPTIGTVLKLAEALDVTVDQLI 75 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR----SIVSSE 130 + + + + F +P + + I +V + + V ++ + Sbjct: 76 AKPQRGNEILLVKAADRVPF--SPSAERQGYTYEAIATERVDKAMQPFVMVPPFTLAQDQ 133 Query: 131 KKYRTIEEECM 141 EE + Sbjct: 134 PMASHAGEELI 144 >gi|329769474|ref|ZP_08260885.1| hypothetical protein HMPREF0433_00649 [Gemella sanguinis M325] gi|328838805|gb|EGF88401.1| hypothetical protein HMPREF0433_00649 [Gemella sanguinis M325] Length = 130 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + NK + G I R GM+Q+ L + L IT + V K+E+ + + L Sbjct: 1 MTNKSM--------GDIISTLRKEKGMTQKDLADMLNITDKAVSKWERNIAFPDTATLPK 52 Query: 62 ISEVLESPISFFFD 75 I+E+ + + Sbjct: 53 IAEIFGVSVEELMN 66 >gi|320178347|gb|EFW53318.1| helix-turn-helix domain protein [Shigella boydii ATCC 9905] Length = 149 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 32/82 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + R+R +R G++ +L L + + + ++E G S L ++ +L Sbjct: 65 NSAINNRLRTQREACGLTTAELARLLDLDEEIIIQWESGEYEPTISMLIPLANILGCDPM 124 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 + T SEE D Sbjct: 125 WLLTGEVTPPEQPKSEEQQHHD 146 >gi|300854557|ref|YP_003779541.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300434672|gb|ADK14439.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 365 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 37/90 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I R G++Q++LG +G++ V K+E G + + L ++ I Sbjct: 4 LQIGEIIFKLRKEKGITQDQLGGFIGVSTAAVSKWESGNSYPDITLLPVLASYFNVSIDK 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + + E + + + D + Sbjct: 64 LLNYKIELSEKEVMEIFKKCEVLFSSDKVD 93 >gi|256617991|ref|ZP_05474837.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|257091482|ref|ZP_05585843.1| predicted protein [Enterococcus faecalis CH188] gi|312905563|ref|ZP_07764677.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|256597518|gb|EEU16694.1| conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|257000294|gb|EEU86814.1| predicted protein [Enterococcus faecalis CH188] gi|310631292|gb|EFQ14575.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315576531|gb|EFU88722.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 257 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR+ +QE++ + L +T Q V K+E G + L +S++ I SP Sbjct: 7 LKTRRINNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 >gi|254488256|ref|ZP_05101461.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] gi|214045125|gb|EEB85763.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] Length = 431 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 4/124 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR RR++ G Q L + +GI+ + E R+G L +I+ L + + Sbjct: 8 GSRIRERRVMAGQKQADLAKEIGISASYLNLIEHNRRRIGGKLLLNIANALGVEPTALTE 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL--QLNRYFIQIDD--VKVRQKIIELVRSIVSSEK 131 + E + G + F D +++I L R++ + Sbjct: 68 GAEAALIASLREAADDAGLSGPEAGRADEFAGRFPGWADVLASAQRRIATLERTVETLTD 127 Query: 132 KYRT 135 + Sbjct: 128 RLAH 131 >gi|193066155|ref|ZP_03047209.1| transcriptional regulator, XRE family [Escherichia coli E22] gi|192926167|gb|EDV80807.1| transcriptional regulator, XRE family [Escherichia coli E22] Length = 112 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R L ++Q+ L + +G+ + +EK A +L +SE + I + Sbjct: 1 MIGLRIKEERERLSLTQQGLADAIGVAKRTFIDWEKDRTSPTAVQLSALSE-IGVDILYV 59 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + + +L F ++ + R+ I+E+ + + + Sbjct: 60 VTGVRSQPVVA---------PYVSQEKKELMDAFDEM-SPEQRRAILEVGKVFIQPKPSK 109 Query: 134 RT 135 Sbjct: 110 LA 111 >gi|160932614|ref|ZP_02080004.1| hypothetical protein CLOLEP_01456 [Clostridium leptum DSM 753] gi|156868573|gb|EDO61945.1| hypothetical protein CLOLEP_01456 [Clostridium leptum DSM 753] Length = 86 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R +SQ L + L ++ +YE G + ++ L ++ + + + + Sbjct: 25 QRIRDLREDRDLSQAALAKLLNVSQSTYSRYESGYLDIPSNILIALARFYQVSVDYILGL 84 Query: 77 SP 78 + Sbjct: 85 TD 86 >gi|154496456|ref|ZP_02035152.1| hypothetical protein BACCAP_00748 [Bacteroides capillosus ATCC 29799] gi|150274539|gb|EDN01616.1| hypothetical protein BACCAP_00748 [Bacteroides capillosus ATCC 29799] Length = 71 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 30/67 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q++LG +G + Q + E+G + I++V + + F + Sbjct: 5 NRLKELRAAKGLNQQELGALVGASRQTISLIERGDYNPSITLALRIAKVFGTTVEQVFYL 64 Query: 77 SPTVCSD 83 + Sbjct: 65 TEEDGEA 71 >gi|153954446|ref|YP_001395211.1| transcription regulator [Clostridium kluyveri DSM 555] gi|153954541|ref|YP_001395306.1| transcription regulator [Clostridium kluyveri DSM 555] gi|146347327|gb|EDK33863.1| Predicted transcriptional regulator with an addtional conserved domain [Clostridium kluyveri DSM 555] gi|146347399|gb|EDK33935.1| Predicted transcriptional regulator with an addtional conserved domain [Clostridium kluyveri DSM 555] Length = 381 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N DI V RI+ R G+S +L E + +T Q + +YEKG+ L+ +S L Sbjct: 4 NNFDI-VPARIKEARESRGLSMSELSELIEVTSQAISQYEKGIMNPSVFVLKKMSNALNF 62 Query: 69 PISFFFDVSPTVCSDISS 86 PI FF+ + S+ Sbjct: 63 PIQFFYKSENERTCENSA 80 >gi|118586301|ref|ZP_01543755.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] gi|118433264|gb|EAV39976.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] Length = 122 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 30/66 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R +SQ+ L L I+ Q + K+E G + L +SE+L+ + Sbjct: 6 EQLKKYRNKKNLSQKDLAGKLFISRQAISKWESGETTPDLNNLIKLSELLDVSLDTLVLG 65 Query: 77 SPTVCS 82 S S Sbjct: 66 SEEQNS 71 >gi|28867345|ref|NP_789964.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|302133575|ref|ZP_07259565.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850579|gb|AAO53659.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|331018535|gb|EGH98591.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 199 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 2/96 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 16 IALDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSM 75 Query: 71 SFFFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FF P + + + + ++D ++L Sbjct: 76 VEFFSEETVPENSAQVVYKASELIDISDGAVTMKLV 111 >gi|307292240|ref|ZP_07572104.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306496746|gb|EFM66299.1| helix-turn-helix protein [Enterococcus faecalis TX0411] Length = 270 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 11 VDI-NVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D VG RIR R L +S EK G+ + + V +E+G+N L I+E+ Sbjct: 3 IDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEIGHV 62 Query: 69 PISFFFDVSPT 79 + + Sbjct: 63 TNEYLLYGTQE 73 >gi|271966422|ref|YP_003340618.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509597|gb|ACZ87875.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 192 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 5/115 (4%) Query: 7 IPNPV-DIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + NPV D+ VG R+R R + L G+T + + E G +L ++ Sbjct: 1 MENPVGDVLAGVGPRLRALRQARSATLAALANETGLTASTLSRLENGKLLPTLEQLLPLA 60 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVR 116 P+ PT I + P + + + I R Sbjct: 61 RAHGVPLDDLVAAPPTGDPRIHLRPVRRSGLVMVPLTRRAGGIQAYKMIYPPAGR 115 >gi|268591080|ref|ZP_06125301.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291313887|gb|EFE54340.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 104 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 3/98 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + P + VG I R G+S +L + L + Q V + E+GV R+ +++ Sbjct: 1 MQSNLSPKEI---VGGNIYKARRAKGLSGSELADLLLCSQQHVSRIERGVIRLHLEQIKQ 57 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 I+ L+ I+ D + ++ N F + Sbjct: 58 IANSLDIDINCLLDGVGFQNNSVNYIHNMECYFKAEGW 95 >gi|167567607|ref|ZP_02360523.1| DNA-binding protein [Burkholderia oklahomensis EO147] Length = 188 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 2/106 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F S Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGISVPSIAVALKLSKALQVDVERLFSDS 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + R + I +K++ V Sbjct: 64 HDRELITVTRASERTSMGGGASAR--ARTYESIASGVAPKKLLPFV 107 >gi|270307708|ref|YP_003329766.1| DNA-binding protein [Dehalococcoides sp. VS] gi|270153600|gb|ACZ61438.1| DNA-binding protein [Dehalococcoides sp. VS] Length = 133 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 4/119 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR +R+ + ++ ++L ++ + + E+G A L+ I+ L F Sbjct: 13 LGEIIRQQRVKIPLTLQELAAKTNVSPSHLGRIERGERFPSARILKRIAHPLGFEEDELF 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK----IIELVRSIVSS 129 ++ + S ++ STP L + + Q+ I+ +++SI S Sbjct: 73 TLAGYLTPQKDSISEIEAEYTSTPRQLDPYVAKVLAQEPIELQRAVIAILAMLKSISKS 131 >gi|154490356|ref|ZP_02030617.1| hypothetical protein PARMER_00589 [Parabacteroides merdae ATCC 43184] gi|154088967|gb|EDN88011.1| hypothetical protein PARMER_00589 [Parabacteroides merdae ATCC 43184] Length = 196 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 57/134 (42%), Gaps = 11/134 (8%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +GN KI +G +I+ R +S +++ E G++ +Q+++ E ++ + L Sbjct: 3 MGNNKI-------IGAKIKSIRESKQLSTQEVSERSGLSIEQIERIEGNIDFPSLAPLIK 55 Query: 62 ISEVLESPISFFFDVSPTVCSDI----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 I+ VL + F D + I S + N + F + + + + + K + Sbjct: 56 IARVLGVRLGTFLDDQSELGPVICRKKDSNDTNSIGFSNNDSKARKHMEYHSLSQDKSGR 115 Query: 118 KIIELVRSIVSSEK 131 + + + SE+ Sbjct: 116 HMEPFLIDVAPSEE 129 >gi|197117030|ref|YP_002137457.1| LexA-like helix-turn-helix transcriptional regulator [Geobacter bemidjiensis Bem] gi|197086390|gb|ACH37661.1| helix-turn-helix transcriptional regulator, LexA-related protein [Geobacter bemidjiensis Bem] Length = 209 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R+ LG++Q++ LGI + E G R + L +S + D Sbjct: 11 GVRIKKARLALGLTQKEFAASLGIVQGFLSGIETGRKRPSDTLLIALSHTFGINAQWLSD 70 Query: 76 VSPTVCSDISSEE 88 S + E Sbjct: 71 GSGESFKNQPGAE 83 >gi|197119757|ref|YP_002140184.1| helix-turn-helix transcriptional regulator [Geobacter bemidjiensis Bem] gi|197089117|gb|ACH40388.1| helix-turn-helix transcriptional regulator with cupin domain [Geobacter bemidjiensis Bem] Length = 199 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 2/122 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K ++ +G+++R R ++ + L + G++ + + E + L Sbjct: 1 MQEKIKQEIREMKLGEKVRGLRQEQRLTLQALADMTGLSKPLLSQIENDQVTPPIATLLK 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR--YFIQIDDVKVRQKI 119 I++ L+ I +FF+ + + + G + + Y + +RQK Sbjct: 61 IAKGLKVGIHYFFEEAGDRQKFMLTRGEQSPLGSQRRPGKENIQHGYMYKPLAPGMRQKK 120 Query: 120 IE 121 +E Sbjct: 121 VE 122 >gi|78224628|ref|YP_386375.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78195883|gb|ABB33650.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 198 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R ++ ++L E G++ + + E + L IS+ L+ I + Sbjct: 13 LRLGEKVRKLRQEQRLTLQELSELSGLSKPLLSQIENDQVTPPIATLLKISKGLKVGIHY 72 Query: 73 FFDVSPTV 80 FF+ Sbjct: 73 FFEEEEDQ 80 >gi|315147042|gb|EFT91058.1| helix-turn-helix protein [Enterococcus faecalis TX4244] Length = 257 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR+ +QE++ + L +T Q + K+E G + L +S++ I SP Sbjct: 7 LKTRRINNHYTQEQIAQKLHVTTQAISKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 >gi|314937221|ref|ZP_07844566.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] gi|313654654|gb|EFS18401.1| putative helix-turn-helix containing protein [Staphylococcus hominis subsp. hominis C80] Length = 137 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 32/68 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G +I+ R MSQEKL E LG++ + +E+ V+ + I+++ + Sbjct: 1 METKIGHQIQKLRKSKNMSQEKLAEKLGVSRHSISNWEREVSNPDLKTILEITKLFNVSL 60 Query: 71 SFFFDVSP 78 + Sbjct: 61 NQLIKGVE 68 >gi|269123675|ref|YP_003306252.1| transcriptional regulator, XRE family [Streptobacillus moniliformis DSM 12112] gi|268315001|gb|ACZ01375.1| transcriptional regulator, XRE family [Streptobacillus moniliformis DSM 12112] Length = 115 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 40/113 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R L +S +K G LG+ + E + ++ I + Sbjct: 3 NRVKELRKKLKLSGDKFGSKLGVKRSTISNLENQTRNLTEQMIKSICREFNVNEEWLRYG 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + + + + + TP L + + + +D ++ I + + S Sbjct: 63 NGPMFNSLKEISLDELALDLTPLELNIIKAYFSLDKEIRQKAIAHFLDCLNKS 115 >gi|237730277|ref|ZP_04560758.1| DNA-binding transcriptional repressor PuuR [Citrobacter sp. 30_2] gi|226905816|gb|EEH91734.1| DNA-binding transcriptional repressor PuuR [Citrobacter sp. 30_2] Length = 185 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 8/105 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P GKR+ R LG+SQ + E G+T + E+ S LQ Sbjct: 1 MSDDGLAP-------GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQ 53 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +V +S FF + + ++++++ S ++L Sbjct: 54 KLLKVYGLSLSEFFAEPEKPDEPQVVINQDDLIEIGSQGVSMKLV 98 >gi|254387045|ref|ZP_05002322.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194345867|gb|EDX26833.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 223 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 2/106 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V VG R+R R G + +LGE GI+ + + E G R L +++ Sbjct: 12 DVLTAVGPRLRALRQQRGTTLAQLGEITGISLSTLSRLESGQRRPTLELLLPLAKAHRVA 71 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDV 113 + T I P F I Sbjct: 72 LDELVGAPETGDPRIRPRPFVRHGSTYVPLTRHFGGVHAFKTIMPP 117 >gi|116510849|ref|YP_808065.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116106503|gb|ABJ71643.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 185 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 30/68 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ ++ R+ ++QE++ + L + Q + ++E L ++E+ +S + F Sbjct: 1 MLGENLQKARLSKNLTQEEVAKELYFSRQAISRWESNKTEPNLETLIALAELYDSDLLAF 60 Query: 74 FDVSPTVC 81 Sbjct: 61 AKGIEPQK 68 >gi|126698607|ref|YP_001087504.1| putative transcriptional regulator [Clostridium difficile 630] gi|254974574|ref|ZP_05271046.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255091964|ref|ZP_05321442.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100060|ref|ZP_05329037.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255305949|ref|ZP_05350121.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255313699|ref|ZP_05355282.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516381|ref|ZP_05384057.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649481|ref|ZP_05396383.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|255655000|ref|ZP_05400409.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|260682647|ref|YP_003213932.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686247|ref|YP_003217380.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296449749|ref|ZP_06891519.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296877934|ref|ZP_06901953.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|115250044|emb|CAJ67864.1| putative transcriptional regulator, HTH [Clostridium difficile] gi|260208810|emb|CBA61711.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212263|emb|CBE02999.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296261473|gb|EFH08298.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296431002|gb|EFH16830.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] Length = 179 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 37/89 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I+ R ++QE+L ++ + + E + + L I E+L + + Sbjct: 1 MDIGEKIKRLRTEKQLTQEELANRCELSKGFISQLENNLTSPSIATLIDILEILGTNLRE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 FF+ + E+ + L Sbjct: 61 FFNEIDDERISFTKEDMFETEDEDLKYKL 89 >gi|108801860|ref|YP_642057.1| XRE family transcriptional regulator [Mycobacterium sp. MCS] gi|119871013|ref|YP_940965.1| XRE family transcriptional regulator [Mycobacterium sp. KMS] gi|126437828|ref|YP_001073519.1| XRE family transcriptional regulator [Mycobacterium sp. JLS] gi|108772279|gb|ABG11001.1| transcriptional regulator, XRE family [Mycobacterium sp. MCS] gi|119697102|gb|ABL94175.1| transcriptional regulator, XRE family [Mycobacterium sp. KMS] gi|126237628|gb|ABO01029.1| transcriptional regulator, XRE family [Mycobacterium sp. JLS] Length = 219 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 33/80 (41%), Gaps = 5/80 (6%) Query: 10 PVD-----INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 PVD +G+ +R R G++ ++ E +GI+ + K E S L +++ Sbjct: 26 PVDDTEFEAAIGRNVRQLRQQHGLTVAEMAERVGISKAMMSKIENAQTSCSLSTLALLAK 85 Query: 65 VLESPISFFFDVSPTVCSDI 84 + P++ F + Sbjct: 86 GFDVPVTTLFRGADVERPAA 105 >gi|150390375|ref|YP_001320424.1| helix-turn-helix domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149950237|gb|ABR48765.1| helix-turn-helix domain protein [Alkaliphilus metalliredigens QYMF] Length = 120 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 49/127 (38%), Gaps = 15/127 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R LGM+QE+LG + T V KYE G L +S++ + I + S Sbjct: 2 RIRELRQELGMTQEELGRKINQTKSNVSKYETGTLEPNIQTLNLLSDIFDVSIDYLVGKS 61 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ-----KIIELVRSIVSSEKK 132 D +L + + ++ +++ + + S+++ Sbjct: 62 NIKKQDACIGAEMH----------ELMNNLGNLSEESKKELEKYVQLLNMKDQLDKSKEE 111 Query: 133 YRTIEEE 139 ++ E+ Sbjct: 112 QSSVLEK 118 >gi|323495755|ref|ZP_08100825.1| hypothetical protein VISI1226_05144 [Vibrio sinaloensis DSM 21326] gi|323319222|gb|EGA72163.1| hypothetical protein VISI1226_05144 [Vibrio sinaloensis DSM 21326] Length = 506 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 8/93 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNR 53 M+ +K + +G +IR R ++ E L + E+G Sbjct: 1 MMLSKSLIRQ-SHFLGTKIRNLRKRNHLTMEDLSARCIRVNPEYAPSVSYLSMIERGKRV 59 Query: 54 VGASRLQHISEVLESPISFFFDVSPTVCSDISS 86 L+ I+EV + ++F D P Sbjct: 60 PSIDMLEVIAEVFQKDPAWFLDDEPEQTDITPD 92 >gi|311071093|ref|YP_003976016.1| hypothetical protein BATR1942_20850 [Bacillus atrophaeus 1942] gi|310871610|gb|ADP35085.1| hypothetical protein BATR1942_20850 [Bacillus atrophaeus 1942] Length = 67 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R+ G +Q + + +T Q + EKG I++ L + F Sbjct: 3 NRVKMARIEKGWTQSQHAAHVSVTRQTIGLIEKGKYNPTLQLCIAIAKALNQTLDQLF 60 >gi|300782967|ref|YP_003763258.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299792481|gb|ADJ42856.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 421 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 2/103 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+R R G++Q +L + V E G L+ + L Sbjct: 5 VGERLRELRTERGLTQREL-AGPQYSAAYVSSVETGARTPSGDALRFFARQLGIDPDELL 63 Query: 75 DV-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 SP ++ E D D + +I R Sbjct: 64 GGRSPRELIELDLELIETADRFLAGDARRATPRMQRIRRRAER 106 >gi|291560817|emb|CBL39617.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 110 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 36/95 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKR++ R G +QE++ + L +T + E ++ L + +++L I + Sbjct: 9 VGKRMKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNLRVLSYYAKLLNVSIDYLL 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + N + + F++ Sbjct: 69 RPESDENGEKDDVLNKEILRLLEKFSTDDKEKFVK 103 >gi|257083082|ref|ZP_05577443.1| conserved hypothetical protein [Enterococcus faecalis Fly1] gi|256991112|gb|EEU78414.1| conserved hypothetical protein [Enterococcus faecalis Fly1] Length = 257 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR+ +QE++ + L +T Q V K+E G + L +S++ I SP Sbjct: 7 LKTRRITNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 >gi|170695594|ref|ZP_02886738.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia graminis C4D1M] gi|170139581|gb|EDT07765.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia graminis C4D1M] Length = 311 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 4/114 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV + +G+R+RL R GM++ L ++ + + E G L +++ L Sbjct: 17 PVLVALGERVRLLRARRGMTRRDLAHQSNVSERHLANLEMGSGNASLLVLAQLAQTLGCS 76 Query: 70 ISFFFDV--SPTVCSDISSEENNVMDFISTPDGLQLNR--YFIQIDDVKVRQKI 119 ++ S + + E + L+ R + D ++I Sbjct: 77 VAALVGDPLSCSAEGEQILELLRDQPPAALQHSLETLRQSLAARSADPGRYRRI 130 >gi|126652117|ref|ZP_01724299.1| DNA-binding protein [Bacillus sp. B14905] gi|126591025|gb|EAZ85136.1| DNA-binding protein [Bacillus sp. B14905] Length = 181 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 1/93 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK++ R + ++ +L GIT + + E+G+ L+ +++ L+ P Sbjct: 3 NIDIGKKVEKYRKMKDLTNRELAALAGITPSMLSQIERGLANPSIQTLKVLAKTLDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF T + N I +L Sbjct: 63 TFFM-EETNTEALIVRSNKRKKMIVDNLSYELL 94 >gi|92112522|ref|YP_572450.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91795612|gb|ABE57751.1| transcriptional regulator, XRE family [Chromohalobacter salexigens DSM 3043] Length = 178 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 1/68 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+P + V +R R G S L E I+ + + E G L ++ L Sbjct: 1 MPSPTPVIV-ANLRRLREARGYSLSALAERAAISKSTLSQLEAGHGNPTIETLWTLANTL 59 Query: 67 ESPISFFF 74 S Sbjct: 60 GVTFSELL 67 >gi|86137308|ref|ZP_01055885.1| transcriptional regulator, putative [Roseobacter sp. MED193] gi|85825643|gb|EAQ45841.1| transcriptional regulator, putative [Roseobacter sp. MED193] Length = 432 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 48/126 (38%), Gaps = 10/126 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR+ILG+ Q +L GI+ + E R+G L +++VL S Sbjct: 4 DTLTGSRIRERRLILGIRQAELARKAGISASYLNLIEHNRRRIGGKLLVALAQVLGVEPS 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + E + P +L+R + + + S+ + Sbjct: 64 MLTEGAEAALIASLREAAAD----AGPQVAELDRT------DEFAGRFPGWAEVLASNHQ 113 Query: 132 KYRTIE 137 + +E Sbjct: 114 RISRLE 119 >gi|312905524|ref|ZP_07764638.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|310631253|gb|EFQ14536.1| helix-turn-helix protein [Enterococcus faecalis TX0635] Length = 270 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 11 VDI-NVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D VG RIR R L +S EK G+ + + V +E+G+N L I+E+ Sbjct: 3 IDKQAVGNRIRQIRQELKLSMEKFGKLIGDLPRSTVNNWERGINLPKTETLHQIAEIGHV 62 Query: 69 PISFFFDVSPT 79 + + Sbjct: 63 TNEYLLYGTQE 73 >gi|283784131|ref|YP_003363996.1| transcriptional regulator of the polyamine metabolism genes [Citrobacter rodentium ICC168] gi|282947585|emb|CBG87140.1| transcriptional regulator of the polyamine metabolism genes [Citrobacter rodentium ICC168] Length = 185 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P GKR+ R G+SQ + E G+T + E+ S LQ Sbjct: 1 MSDDGLAP-------GKRLSEIRQKQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQ 53 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +V +S FF + + ++++++ S ++L Sbjct: 54 KLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEIGSQGVSMKLV 98 >gi|237745760|ref|ZP_04576240.1| helix-turn-helix domain-containing protein [Oxalobacter formigenes HOxBLS] gi|229377111|gb|EEO27202.1| helix-turn-helix domain-containing protein [Oxalobacter formigenes HOxBLS] Length = 166 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 15/117 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R LG+SQE G + + +E+G L ++ + + Sbjct: 38 IGVRLREERERLGLSQEDFAAIGGASRRSQIDWEQGKFVPNVEFLVAVAGE-GVDVLYVL 96 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 T + E+ L + F + D+ + +I L++ +V + K Sbjct: 97 TGQRTYKTLTDEEK-------------DLIKGFNAL-DLVGKAGVISLIKGMVQASK 139 >gi|228962054|ref|ZP_04123549.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797628|gb|EEM44746.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 125 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 29/75 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R +S +LGE LG+ V +E L I++ + + Sbjct: 9 GQRLKELRKNKKLSMRQLGEVLGVKQTNVSNWENVGTEPDYKTLIRIAQFFDVSTDYLIG 68 Query: 76 VSPTVCSDISSEENN 90 S + S E+ Sbjct: 69 NSVEFNDNESKEKRE 83 >gi|227329661|ref|ZP_03833685.1| putative DNA-binding protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 188 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 5/138 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G ++ R G S + E G++ + + E+G + + L I+ + Sbjct: 1 MSDELTRRIGNTLKTLRQEKGWSLTRAAEETGVSKAMLGQIERGESSPTVATLWKIATGM 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 S F + + D++ F G+ + F D K+R LV + Sbjct: 61 NVAFSSFIEPTLAD-EDVTYRSGTGSSFRENEAGMHVAPLFP--FDEKLR--FDMLVIEL 115 Query: 127 VSSEKKYRTIEEECMVEQ 144 + + E ++E Sbjct: 116 AAGASSTSSAHESGVIEH 133 >gi|222152419|ref|YP_002561594.1| DNA-binding phage protein [Streptococcus uberis 0140J] gi|222113230|emb|CAR40725.1| putative DNA-binding phage protein [Streptococcus uberis 0140J] Length = 204 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 40/105 (38%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G RI+ R+ GM+ E+ G+ + V +EKG N RL+ I+++ + + Sbjct: 7 NKLIGSRIKNIRLEKGMTLEEFGKLFNASKSSVYGWEKGRNLPNKERLKQIAKIGDMKLG 66 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 I + NV + I+ +R Sbjct: 67 VLLKGDKVYSPFIFPDFRNVKSEEDIKNYALECVDIIRFSTPDMR 111 >gi|218529602|ref|YP_002420418.1| phage repressor [Methylobacterium chloromethanicum CM4] gi|218521905|gb|ACK82490.1| putative phage repressor [Methylobacterium chloromethanicum CM4] Length = 244 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 4/94 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + NP +G IR R G++Q + L I+ V ++E G RL ++ +L Sbjct: 1 MANP----LGPVIREARKARGLTQGDIASALKISRPAVGQWESGDTGPDRDRLPALARLL 56 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 + + + ++E + + + P Sbjct: 57 RVDLGALTNGELVLLDQEAAEGVSDSEALPAPTA 90 >gi|209515409|ref|ZP_03264275.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209504129|gb|EEA04119.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 204 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 38/85 (44%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K+ +P +VG R+R R+ G+S +L G++ V + E+ L+ + Sbjct: 7 SKKRAADPGHGDVGTRLRALRIAHGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERL 66 Query: 63 SEVLESPISFFFDVSPTVCSDISSE 87 + LE P++ + V ++ + Sbjct: 67 RQALEVPLTALLEEDDAVSDPVTGD 91 >gi|166033316|ref|ZP_02236145.1| hypothetical protein DORFOR_03042 [Dorea formicigenerans ATCC 27755] gi|166027673|gb|EDR46430.1| hypothetical protein DORFOR_03042 [Dorea formicigenerans ATCC 27755] Length = 260 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R ++Q+ L E L ++ + V K+E+G++ L I+++L+ ++ Sbjct: 17 GLFVTELRKKKNLTQKDLAEKLYVSDKTVSKWERGLSMPNVVLLIPIADILDVTVTELLR 76 Query: 76 VSPTVCSDISS 86 Sbjct: 77 GEKIDTQKNID 87 >gi|323691130|ref|ZP_08105410.1| hypothetical protein HMPREF9475_00271 [Clostridium symbiosum WAL-14673] gi|323504827|gb|EGB20609.1| hypothetical protein HMPREF9475_00271 [Clostridium symbiosum WAL-14673] Length = 130 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+RL R G +QE + + +G T Q +YE + L ++S + Sbjct: 4 LGERLRLLREKNGKTQEDISKVIGTTQQIYSRYETNKTELPVRHLLNLSSYYNVSTDYLL 63 >gi|320526956|ref|ZP_08028145.1| cupin domain protein [Solobacterium moorei F0204] gi|320132541|gb|EFW25082.1| cupin domain protein [Solobacterium moorei F0204] Length = 180 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G RI+ R+ ++ E+L +T + + E+ + L I+E L +S Sbjct: 2 IDIGHRIKQLRIKNDLTLEELASRTELTKGFLSQLERNLTSPSIQTLADIAEALGVDMSR 61 Query: 73 FFDVSPTVCSDISSEE 88 FF + E+ Sbjct: 62 FFAEEHEEKIVFTPED 77 >gi|298492312|ref|YP_003722489.1| XRE family molybdate metabolism transcriptional regulator ['Nostoc azollae' 0708] gi|298234230|gb|ADI65366.1| transcriptional regulator of molybdate metabolism, XRE family ['Nostoc azollae' 0708] Length = 377 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 29/69 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ ++ R LGMSQ++L +T Q + E G+ + +++ L + Sbjct: 6 HLRNNLKSIRTRLGMSQQELANLAAVTRQTISGVESGLYAPSVAISLRLAKALGCQVEEL 65 Query: 74 FDVSPTVCS 82 F + + Sbjct: 66 FWLEHDLPQ 74 >gi|261206964|ref|ZP_05921653.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289565399|ref|ZP_06445849.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|260078592|gb|EEW66294.1| conserved hypothetical protein [Enterococcus faecium TC 6] gi|289162889|gb|EFD10739.1| conserved hypothetical protein [Enterococcus faecium D344SRF] gi|302179986|gb|ADK98554.1| hypothetical protein [Enterococcus faecium] Length = 117 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 1/106 (0%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D VG I+ RM G+++E++G + I + + E L + Sbjct: 2 RKKEDKYDFRAVGLAIKEARMKRGLTREQVGALIEIDPRYLTNIENKGQHPSIQVLYDLV 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +L+ + FF + + + T L L Sbjct: 62 SLLDVSVDEFFLPHNDLTKSTRRLQVEKLLDNFTDKELSLIEALAS 107 >gi|257880759|ref|ZP_05660412.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|260562583|ref|ZP_05833091.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] gi|257814987|gb|EEV43745.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|260073093|gb|EEW61440.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] Length = 306 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 52/132 (39%), Gaps = 13/132 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECL--GITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+RIR R ++ E+ G+ + +E G N + R++ I+E+ Sbjct: 173 KMIGQRIRKIRKKENITLEEFGKLFSPTADKAVISNWENGKNLPNSERIKKIAEIGGVSE 232 Query: 71 SFFFDVSPTVCSD----ISSEENNVMDFISTPDGLQLNRYF-------IQIDDVKVRQKI 119 + + ++ +S + ++ +S + ++ F +IDD R+ Sbjct: 233 LYLMTGVDSSVAESMYFLSEVALDALERLSIEEVNRIIESFAGYLNVISKIDDPDKREIS 292 Query: 120 IELVRSIVSSEK 131 + + + +K Sbjct: 293 LNAICQLSLLDK 304 Score = 39.8 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 48/129 (37%), Gaps = 14/129 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G RI+ R G + LG+ + + +EKG N RL+ I+ + + + + Sbjct: 17 GNRIKQIREKHGYTMADLGKLVDANSPSTINNWEKGNNLPNRKRLEKIALLGGTSVEWI- 75 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE---LVRSIVSSEK 131 + ++ + ++ ++ + + + R+ +++ + + + Sbjct: 76 ---------KYGDFSDYVYRLTQNIEEKILKEYGETTLNNYREALLDELTIEKITYEEDT 126 Query: 132 KYRTIEEEC 140 K E+ Sbjct: 127 KILAAAEKI 135 >gi|261366571|ref|ZP_05979454.1| LexA repressor [Subdoligranulum variabile DSM 15176] gi|282571390|gb|EFB76925.1| LexA repressor [Subdoligranulum variabile DSM 15176] Length = 209 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R SQ ++ LG+T Q V K+E G + + ++E+L++ + Sbjct: 5 RLKEARKAKKYSQAEISRMLGVTQQAVGKWETGRSTPDPQTVARLAEILDTTADVLLGLQ 64 Query: 78 PTVCSDIS 85 + + Sbjct: 65 KSPSEAPA 72 >gi|210610467|ref|ZP_03288424.1| hypothetical protein CLONEX_00614 [Clostridium nexile DSM 1787] gi|210152460|gb|EEA83466.1| hypothetical protein CLONEX_00614 [Clostridium nexile DSM 1787] Length = 110 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G RI+ +R+ G++ L L IT QV + E+G + +L I ++L Sbjct: 14 DDIRKQIGWRIQEKRIEKGITAVDLSTYLNITANQVSRIERGCAGIDIYKLIVICKILGV 73 Query: 69 PISF-FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + F IS E+ ++ + + G + Sbjct: 74 SADYILFGEMKEENITISKEQFEAINGLISMFGKE 108 >gi|104784313|ref|YP_610811.1| transcriptional regulator [Pseudomonas entomophila L48] gi|95113300|emb|CAK18028.1| putative transcriptional regulator [Pseudomonas entomophila L48] Length = 182 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVE 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF +++P + I + + ++D ++L Sbjct: 61 FFSVELAPESPTQIVYKAHELIDISDGAVTMKLV 94 >gi|91211688|ref|YP_541674.1| repressor protein [Escherichia coli UTI89] gi|117624572|ref|YP_853485.1| putative phage repressor protein [Escherichia coli APEC O1] gi|218559304|ref|YP_002392217.1| Repressor protein CII [Escherichia coli S88] gi|218695990|ref|YP_002403657.1| Repressor protein CII [Escherichia coli 55989] gi|91073262|gb|ABE08143.1| repressor protein [Escherichia coli UTI89] gi|115513696|gb|ABJ01771.1| putative phage repressor protein [Escherichia coli APEC O1] gi|148566149|gb|ABQ88424.1| prophage repressor [Enterobacteria phage CUS-3] gi|218352722|emb|CAU98505.1| Repressor protein CII [Escherichia coli 55989] gi|218366073|emb|CAR03818.1| Repressor protein CII [Escherichia coli S88] gi|294490247|gb|ADE89003.1| repressor protein C2 [Escherichia coli IHE3034] gi|307626074|gb|ADN70378.1| Repressor protein CII [Escherichia coli UM146] gi|312945519|gb|ADR26346.1| Repressor protein CII [Escherichia coli O83:H1 str. NRG 857C] gi|323948802|gb|EGB44701.1| peptidase S24 [Escherichia coli H252] gi|324117735|gb|EGC11634.1| peptidase S24 [Escherichia coli E1167] Length = 216 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L ++ L+ + Sbjct: 7 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALANALKCSPDYLMK 66 Query: 76 VSPTVCS 82 ++ + Sbjct: 67 GEESLSN 73 >gi|83943125|ref|ZP_00955585.1| transcriptional regulator, putative [Sulfitobacter sp. EE-36] gi|83846133|gb|EAP84010.1| transcriptional regulator, putative [Sulfitobacter sp. EE-36] Length = 431 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 4/128 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR++ G Q L + +GI+ + E R+G L +I+ L + Sbjct: 4 DALTGSRIRERRVMAGQKQADLAKRIGISASYLNLIEHNRRRIGGKLLLNIAAALGVEPT 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGL--QLNRYFIQIDD--VKVRQKIIELVRSIV 127 + + E + + F D +++I L R++ Sbjct: 64 ALTEGAEAALIATLREAADDARLSGPEATRADEFAGRFPGWADVLANAQRRIATLERTVE 123 Query: 128 SSEKKYRT 135 + + Sbjct: 124 TLTDRLAH 131 >gi|330877739|gb|EGH11888.1| DNA-binding protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965172|gb|EGH65432.1| DNA-binding protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 182 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 1/101 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++L R +SQ +L G+T + E+ S L+ + E + ++ FF Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 D +G++L + ++R Sbjct: 64 FDQPPGQDQYV-FRAGDQPDLGRNGVRLLLVGATLPSRQMR 103 >gi|331085520|ref|ZP_08334605.1| hypothetical protein HMPREF0987_00908 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407758|gb|EGG87256.1| hypothetical protein HMPREF0987_00908 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 134 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 34/73 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R GM+Q +L E +G+T + V K+E+ ++ S + ++E+L + Sbjct: 6 LGVMIASIRKERGMTQLELAEKMGVTDKAVSKWERDLSCPDVSSIPQLAEILGVSVDELM 65 Query: 75 DVSPTVCSDISSE 87 V S + Sbjct: 66 QVKDITKETSSQD 78 >gi|296269329|ref|YP_003651961.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092116|gb|ADG88068.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 165 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 13/148 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISE 64 +P+ ++G R+R R G+S + E ++ V YE+G V +L ++E Sbjct: 1 MPSDYAKSLGARLRAIRTQQGLSLHGVEEKSRGRWKAVVVGSYERGDRAVTVQKLAELAE 60 Query: 65 VLESPISFFFDVSPTVCSDISSEE----NNVMDFISTPDGLQLNRYFIQIDDVK--VRQK 118 P++ + + + + + L RY I + K Sbjct: 61 FYGVPVAELLPGGNSPAPVAPTPKLVINLERLAQLPKEKVGPLARYVATIQSQRGDYNGK 120 Query: 119 IIEL----VRSIV-SSEKKYRTIEEECM 141 ++ + +RS+ +K + EE + Sbjct: 121 VLSIRQEDLRSLAVIYDKSPAELTEEFI 148 >gi|296102579|ref|YP_003612725.1| DNA-binding transcriptional repressor PuuR [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057038|gb|ADF61776.1| DNA-binding transcriptional repressor PuuR [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 185 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 7/83 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P GKR+ R LG+SQ + E G+T + E+ S LQ Sbjct: 1 MSDDGLAP-------GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQ 53 Query: 61 HISEVLESPISFFFDVSPTVCSD 83 + +V +S FF Sbjct: 54 KLLKVYGLSLSEFFSEPEKPDEP 76 >gi|257484178|ref|ZP_05638219.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|298486948|ref|ZP_07005001.1| Transcriptional regulator, MerR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298158510|gb|EFH99577.1| Transcriptional regulator, MerR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320324095|gb|EFW80177.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. B076] gi|320327822|gb|EFW83829.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|320328658|gb|EFW84658.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330885478|gb|EGH19627.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330891025|gb|EGH23686.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] gi|330985445|gb|EGH83548.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331008257|gb|EGH88314.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 182 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 1/101 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++L R +SQ +L G+T + E+ S L+ + E + ++ FF Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 D +G++L + ++R Sbjct: 64 FDQPPGQDQYV-FRAGDQPDLGRNGVRLLLVGATLPSRQMR 103 >gi|251778801|ref|ZP_04821721.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083116|gb|EES49006.1| DNA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 179 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 39/90 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR+ RM ++QE+L ++ + + E + + L I E+L + ++ Sbjct: 1 MQIGEKIRVLRMEKQLTQEELANRCELSKGFISQLENDLTSPSIATLMDILEILGTNLNE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 FF + S+ + D L Sbjct: 61 FFSETKEEQVIFSNNDMFKTDDEELKYSLM 90 >gi|237797306|ref|ZP_04585767.1| DNA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020156|gb|EGI00213.1| DNA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 182 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 1/101 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++L R +SQ +L G+T + E+ S L+ + E + ++ FF Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 D +G++L + ++R Sbjct: 64 FDQPPGQDQYV-FRAGDQPDLGRNGVRLLLVGATLPSRQMR 103 >gi|269838045|ref|YP_003320273.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787308|gb|ACZ39451.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 131 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 4/128 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + V +G IR R G+S L E GI+ + + EKG + + L Sbjct: 6 SERRPTSSEVRQRIGPAIRRLRQQQGLSLSDLAERTGISVSYLSRLEKGRSVPSFTLLSR 65 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + L I FF + + E + D ++ R+ +++ Sbjct: 66 LGNELGVDIGFFVETEREAQDVDRALEEELSKTSIPEDVWPEIFSL----SIEARKALLD 121 Query: 122 LVRSIVSS 129 + + Sbjct: 122 YFEAHARA 129 >gi|218281920|ref|ZP_03488252.1| hypothetical protein EUBIFOR_00820 [Eubacterium biforme DSM 3989] gi|218217063|gb|EEC90601.1| hypothetical protein EUBIFOR_00820 [Eubacterium biforme DSM 3989] Length = 237 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 25/73 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V + I+ R M+Q + G G++ Q V +E G + L I + Sbjct: 1 MTVAEMIKKTRTEANMTQGEYGAKFGVSRQTVSSWENGRSLPDLQMLIDICNTYHVSLDK 60 Query: 73 FFDVSPTVCSDIS 85 + I Sbjct: 61 LLNEDKEFVEKID 73 >gi|167913747|ref|ZP_02500838.1| putative transcriptional regulator, XRE family protein [Burkholderia pseudomallei 112] Length = 86 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 25/70 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ +R R G+SQE L + V E G + + I LE S F Sbjct: 8 AVGEVLRSLRRRKGLSQEALAHAADMERNYVSLIELGRHSPSVRVIWKICAALEVTPSAF 67 Query: 74 FDVSPTVCSD 83 + + Sbjct: 68 LAAAEARLGE 77 >gi|217960732|ref|YP_002339296.1| DNA-binding protein [Bacillus cereus AH187] gi|229139935|ref|ZP_04268500.1| hypothetical protein bcere0013_30420 [Bacillus cereus BDRD-ST26] gi|217067257|gb|ACJ81507.1| DNA-binding protein [Bacillus cereus AH187] gi|228643600|gb|EEK99866.1| hypothetical protein bcere0013_30420 [Bacillus cereus BDRD-ST26] Length = 374 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + ++ + + + ++ I+ + Sbjct: 64 LISYTPQMEQEDIKDLYHRLAEAFSEKPFDEVMIECRKIIKKYYSCFPLLIQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDTDRRIEILEEAM 141 >gi|28870080|ref|NP_792699.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213966893|ref|ZP_03395043.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|301381575|ref|ZP_07229993.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302061669|ref|ZP_07253210.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40] gi|302134354|ref|ZP_07260344.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853326|gb|AAO56394.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213928215|gb|EEB61760.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|331015365|gb|EGH95421.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 182 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 1/101 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++L R +SQ +L G+T + E+ S L+ + E + ++ FF Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 D +G++L + ++R Sbjct: 64 FDQPPGQDQYV-FRAGDQPDLGRNGVRLLLVGATLPSRQMR 103 >gi|71736787|ref|YP_274675.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557340|gb|AAZ36551.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 203 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 1/101 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++L R +SQ +L G+T + E+ S L+ + E + ++ FF Sbjct: 25 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 84 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 D +G++L + ++R Sbjct: 85 FDQPPGQDQYV-FRAGDQPDLGRNGVRLLLVGATLPSRQMR 124 >gi|16077549|ref|NP_388363.1| phage element (ICEBs1)transcriptional regulator (Xre family) [Bacillus subtilis subsp. subtilis str. 168] gi|221308307|ref|ZP_03590154.1| hypothetical protein Bsubs1_02728 [Bacillus subtilis subsp. subtilis str. 168] gi|221312629|ref|ZP_03594434.1| hypothetical protein BsubsN3_02704 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317552|ref|ZP_03598846.1| hypothetical protein BsubsJ_02663 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321828|ref|ZP_03603122.1| hypothetical protein BsubsS_02734 [Bacillus subtilis subsp. subtilis str. SMY] gi|38503281|sp|P96631|IMMR_BACSU RecName: Full=HTH-type transcriptional regulator immR gi|1881293|dbj|BAA19320.1| ydcN [Bacillus subtilis] gi|2632782|emb|CAB12289.1| phage element (ICEBs1)transcriptional regulator (Xre family) [Bacillus subtilis subsp. subtilis str. 168] gi|291482893|dbj|BAI83968.1| hypothetical protein BSNT_00832 [Bacillus subtilis subsp. natto BEST195] Length = 127 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 5/132 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKR++ R G +Q++ E L I + YE+ L +S + + Sbjct: 1 MSLGKRLKEARQKAGYTQKEAAEKLNIGNNNLSNYERDYRDPDTDTLLKLSNLYNVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + N ++ + F+ + E R + + K Sbjct: 61 LLGKDEVSKKNETDLLNKTINEAIQELKDEDTLLFMNDGEFDE-----ETARLVKKALKN 115 Query: 133 YRTIEEECMVEQ 144 +E ++ Sbjct: 116 GIKFIDELKKKE 127 >gi|331089117|ref|ZP_08338021.1| hypothetical protein HMPREF1025_01604 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406017|gb|EGG85541.1| hypothetical protein HMPREF1025_01604 [Lachnospiraceae bacterium 3_1_46FAA] Length = 135 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ RR L +SQ + E IT + K E G +S+VLE +++ Sbjct: 8 IGERIKTRRKELKLSQTDIYERCDITSGALSKIENGKTTPSVIAFYKLSQVLECDMNWLA 67 Query: 75 DV 76 Sbjct: 68 TG 69 >gi|314939500|ref|ZP_07846732.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314944174|ref|ZP_07850819.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314951901|ref|ZP_07854933.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314994467|ref|ZP_07859746.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314997871|ref|ZP_07862772.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313588096|gb|EFR66941.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313591122|gb|EFR69967.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313595935|gb|EFR74780.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313597236|gb|EFR76081.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313641201|gb|EFS05781.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 254 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGEC--LGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG RIRL R LG+S ++ G+ V ++E+G++ RL I+++ I++ Sbjct: 8 VGNRIRLVRKELGLSMKEFGKKITPTAADSIVSRWERGISLPNNDRLTQIAKIAHKDINW 67 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 + ++ +F++ Sbjct: 68 LLWGTFKEFISSLLDKEGYTNFLND 92 >gi|313677003|ref|YP_004054999.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312943701|gb|ADR22891.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 283 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 6/92 (6%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K P +G +I+ R G++QE+L E + + +Q+ E G + ++ I Sbjct: 8 NMKQP-----ELGHKIQNWRKAQGLTQEELVEKCNLNVRTLQRIEAGEVLPRSYTVKSIL 62 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFI 95 EVL+ S ++ + +S + F+ Sbjct: 63 EVLKVDFSEL-NLKEEQKNQLSVLLESKRSFL 93 >gi|313672662|ref|YP_004050773.1| cupin 2 conserved barrel domain protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939418|gb|ADR18610.1| Cupin 2 conserved barrel domain protein [Calditerrivibrio nitroreducens DSM 19672] Length = 181 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 1/110 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I RM ++ +L + G + + + E+ + S L+ I++ LE + + Sbjct: 1 MSIGKKIVELRMKKNLTLRQLSKISGCSLGFLSQVERDLVSPTVSSLKKIADALEVNMMY 60 Query: 73 FFDV-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 FFD + T + E N M + +L R D++ I+E Sbjct: 61 FFDSPTKTQRIVVRKGERNRMTNPKSKVVYELLRPQFSDSDLQALYMILE 110 >gi|255024118|ref|ZP_05296104.1| transcription regulator, putative [Listeria monocytogenes FSL J1-208] Length = 110 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R+ ++QE+LGE +T + + E+ ++ L I EVL S Sbjct: 1 MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD 60 Query: 73 FFDVSPTVCSDISSEENN 90 FFD I E + Sbjct: 61 FFDEEEHNQKVIYGELEH 78 >gi|229170494|ref|ZP_04298145.1| hypothetical protein bcere0007_54110 [Bacillus cereus AH621] gi|228612964|gb|EEK70138.1| hypothetical protein bcere0007_54110 [Bacillus cereus AH621] Length = 163 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 6/109 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKRI+ R I +Q++L + + +T Q V +E+ L +S++ + + Sbjct: 9 GKRIKELRNIKNWTQKELAKNIDVTSQVVSNWEREYTSPNHEDLLKMSKLFQVTTDYILL 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 ++ + N DF S + F ++ + K++E + Sbjct: 69 G-----NNNIKKINLNYDFESLNETFGNTLAFKN-KEINLINKLLEYIE 111 >gi|209808838|ref|YP_002274409.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257880761|ref|ZP_05660414.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257892131|ref|ZP_05671784.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257895013|ref|ZP_05674666.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260562585|ref|ZP_05833093.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] gi|209528675|dbj|BAG74976.1| Cro/CI family transcriptional regulator [Enterococcus faecium] gi|257814989|gb|EEV43747.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257828491|gb|EEV55117.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|257831392|gb|EEV57999.1| transcriptional regulator [Enterococcus faecium 1,231,408] gi|260073095|gb|EEW61442.1| CRO/CI family transcriptional regulator [Enterococcus faecium C68] Length = 260 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 P+P VG++IR R LG++ ++ E V +E G N ++L+ I+++ Sbjct: 145 KPDP--KKVGRKIRSIRKKLGLTMQEFGYEVSNSPRSTVSTWEHGGNLPNKAKLKKIADI 202 Query: 66 LESPISFFFDVSP 78 + Sbjct: 203 ANCSVEDLLFDEG 215 Score = 39.8 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEV 65 PNP GKRI+ R+ G + E+LG + + +E+G N +L+ +S + Sbjct: 2 KPNP--SEAGKRIKQLRLSCGFTMEELGRKIDNSPRATISNWERGTNLPNPQKLKLLSTI 59 Query: 66 LESPISFF 73 S I + Sbjct: 60 TNSTIDWI 67 >gi|291549648|emb|CBL25910.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 118 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/98 (15%), Positives = 41/98 (41%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 1 MPIDDLTALGQKMRESRKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + + D +++ + + L Sbjct: 61 PISLDTLINPDVSPEDDGANQMKMLYCSCPSEMRETLL 98 >gi|256394949|ref|YP_003116513.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361175|gb|ACU74672.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 193 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 4/88 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + D V +RIR R+ G + + L ++ + + E G R+ +L Sbjct: 1 MTQEPDM----DALVRRRIRTLRLARGWTLDSLASRCDLSPSNLSRIETGQRRIALDQLV 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEE 88 I+ L + + + I E Sbjct: 57 PIARALGTTLDQLVEPGDDTGVVIRPEP 84 >gi|168186759|ref|ZP_02621394.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum C str. Eklund] gi|169295309|gb|EDS77442.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum C str. Eklund] Length = 432 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR LGM+ + L IT Q+ E G + L++++E L I + Sbjct: 6 LGEKIKRRRKELGMTLKDL-AGDRITPGQISLVESGKSNPSMDLLEYLAESLNISIEYLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + T I + N+ + + L L + Sbjct: 65 ESEETQAEKICAYYENICESHILNNQLSLAEQY 97 >gi|325527286|gb|EGD04653.1| helix-turn-helix domain-containing protein [Burkholderia sp. TJI49] Length = 84 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 3/84 (3%) Query: 1 MVGNK--KIPNPVDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M K + P+P + RIR+ R G+SQE E GI V E+G V S Sbjct: 1 MGKTKSLRKPSPPLKAILATRIRVYRQEHGLSQEDFAELCGIHRTYVGSVERGERNVTLS 60 Query: 58 RLQHISEVLESPISFFFDVSPTVC 81 L+ + V+ P+ Sbjct: 61 TLEVFASVMGIPVPELLTEREPEA 84 >gi|319650130|ref|ZP_08004279.1| hypothetical protein HMPREF1013_00884 [Bacillus sp. 2_A_57_CT2] gi|317398311|gb|EFV79000.1| hypothetical protein HMPREF1013_00884 [Bacillus sp. 2_A_57_CT2] Length = 183 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++G+ +R R G S + E G++ + + E+G + + L I+ L+ Sbjct: 4 IQKSIGENLRNIRKTRGYSLDAAAEITGVSKAMLGQIERGESNPTVTTLWKIASGLQVSF 63 Query: 71 SFFFDVSPTVCS 82 S P+ Sbjct: 64 SSLIHEEPSDVQ 75 >gi|256854918|ref|ZP_05560282.1| predicted protein [Enterococcus faecalis T8] gi|307290768|ref|ZP_07570666.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|256710478|gb|EEU25522.1| predicted protein [Enterococcus faecalis T8] gi|306498188|gb|EFM67707.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|315028649|gb|EFT40581.1| helix-turn-helix protein [Enterococcus faecalis TX4000] Length = 257 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR+ +QE++ + L +T Q V K+E G + L +S++ I SP Sbjct: 7 LKTRRINNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 >gi|167745764|ref|ZP_02417891.1| hypothetical protein ANACAC_00458 [Anaerostipes caccae DSM 14662] gi|167654795|gb|EDR98924.1| hypothetical protein ANACAC_00458 [Anaerostipes caccae DSM 14662] Length = 149 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 4/125 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G + R G+SQE + LG++ Q + K+E G + ++++ + + Sbjct: 1 MNLGNSLFNARKKSGLSQEDVAGKLGVSRQTISKWETGETLPDIRQSKNLAVLYHVSLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDF----ISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + + + EN + T + + +K ++ ++ Sbjct: 61 LIEFDIELKEIEQAIENTNEEIQQKVDWTKVWAKKYPILTSYQEEVEVEKYAGEMKRMLE 120 Query: 129 SEKKY 133 S K+ Sbjct: 121 SLKRD 125 >gi|163731757|ref|ZP_02139204.1| transcriptional regulator HTH-3 family, putative [Roseobacter litoralis Och 149] gi|161395211|gb|EDQ19533.1| transcriptional regulator HTH-3 family, putative [Roseobacter litoralis Och 149] Length = 207 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 2/66 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D +G R+R R + E+ G+ + K E G L+ ++ L Sbjct: 24 PLD--LGVRVRELRKARAWTLEQAATKAGLARSTLSKIENGQMSPTYDALKKLATGLNIS 81 Query: 70 ISFFFD 75 I F Sbjct: 82 IPQLFT 87 >gi|222053908|ref|YP_002536270.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563197|gb|ACM19169.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 150 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 4/119 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R+++ RM ++Q++L + + + + K E+G L IS+ L P++ Sbjct: 5 IGSRLKMLRMERSLTQKELAVMVSGGLDYTYIGKIERGEQLPSLKILLKISDALSVPVAS 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF + + + + IS G QL + ++ D + +IE+++ + K Sbjct: 65 FFQDELFAAASDIAS-SELRYLISEETGRQLVKAL-KLVDKEDFPLLIEIIKVLGRHRK 121 >gi|90414870|ref|ZP_01222836.1| putative transcriptional regulator [Photobacterium profundum 3TCK] gi|90324048|gb|EAS40639.1| putative transcriptional regulator [Photobacterium profundum 3TCK] Length = 208 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR++ RM G++ E+ + G+ + K E +Q ++ L I F Sbjct: 29 LGKRLKEIRMAHGLTLEEASKRTGLARSTLSKIENEQISPTFQAMQKLANGLSVDIPQLF 88 >gi|148550378|ref|YP_001270480.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148514436|gb|ABQ81296.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 199 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R++ R + G+SQ +L + G+T + EK S L+ + + + FF Sbjct: 20 VGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEFF 79 Query: 75 --DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ P + I + + ++D ++L Sbjct: 80 SVELEPQSPTQIVYKAHELIDISDGAVTMKLV 111 >gi|15600494|ref|NP_253988.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116053448|ref|YP_793775.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218894404|ref|YP_002443274.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254238004|ref|ZP_04931327.1| hypothetical protein PACG_04117 [Pseudomonas aeruginosa C3719] gi|254243812|ref|ZP_04937134.1| hypothetical protein PA2G_04640 [Pseudomonas aeruginosa 2192] gi|296392160|ref|ZP_06881635.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313106725|ref|ZP_07792942.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9951617|gb|AAG08686.1|AE004943_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115588669|gb|ABJ14684.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126169935|gb|EAZ55446.1| hypothetical protein PACG_04117 [Pseudomonas aeruginosa C3719] gi|126197190|gb|EAZ61253.1| hypothetical protein PA2G_04640 [Pseudomonas aeruginosa 2192] gi|218774633|emb|CAW30450.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310879444|gb|EFQ38038.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 182 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLVE 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF D+ + + + + ++D S ++L Sbjct: 61 FFSLDLEQDSHTQVVYKADELIDISSGAVSMRLV 94 >gi|302335133|ref|YP_003800340.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301318973|gb|ADK67460.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 335 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R GM+QE+L +G++ Q V K+E +L I +V + I Sbjct: 6 NLQHLRATRGMTQEQLAMMVGVSRQSVTKWESERAYPEMDKLLKICQVFDCTIDDLVQGD 65 Query: 78 PTVCSDISS 86 T + Sbjct: 66 LTTRAGEPK 74 >gi|255092294|ref|ZP_05321772.1| putative phage repressor [Clostridium difficile CIP 107932] gi|255100378|ref|ZP_05329355.1| putative phage repressor [Clostridium difficile QCD-63q42] gi|255306320|ref|ZP_05350491.1| putative phage repressor [Clostridium difficile ATCC 43255] gi|255649811|ref|ZP_05396713.1| putative phage repressor [Clostridium difficile QCD-37x79] Length = 118 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 44/107 (41%), Gaps = 2/107 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 KR+R R G++Q +LGE +G++ + + YE L +++V + + Sbjct: 4 KRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFNVSVDYLLGR 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + +++ N + + QLN Y + + + K + Sbjct: 64 TLVKENIDTVAAHRKNPHEELPEEAQEQLNDYIEFLLNKYKKNKPYD 110 >gi|222098627|ref|YP_002532685.1| DNA-binding protein [Bacillus cereus Q1] gi|221242686|gb|ACM15396.1| dna-binding protein [Bacillus cereus Q1] Length = 98 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 38 NKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 97 Query: 77 S 77 Sbjct: 98 E 98 >gi|167566021|ref|ZP_02358937.1| transcriptional regulator, XRE family protein [Burkholderia oklahomensis EO147] gi|167573100|ref|ZP_02365974.1| transcriptional regulator, XRE family protein [Burkholderia oklahomensis C6786] Length = 95 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 24/71 (33%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R SQE+L E G+ V + E+G + ++ PI+ Sbjct: 9 GAAIRELREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLLP 68 Query: 76 VSPTVCSDISS 86 + Sbjct: 69 PASDPSEPPPP 79 >gi|91209339|ref|YP_539325.1| putative transcription regulator [Escherichia coli UTI89] gi|91070913|gb|ABE05794.1| putative transcription regulator [Escherichia coli UTI89] Length = 154 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 1/121 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 1 MKKSLRIQFGERVKELRVATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLASAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI-QIDDVKVRQKIIELVRS 125 + +D D L +R + D +++ + + Sbjct: 61 SVEPWQLLVFDSSEENDPELLVPYAADGTCFNPELASSRDGSFAVGDKAAQKRFGSFIEA 120 Query: 126 I 126 + Sbjct: 121 L 121 >gi|146301390|ref|YP_001195981.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146155808|gb|ABQ06662.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 138 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 58/144 (40%), Gaps = 7/144 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + PN ++G++I R + M QE L + +G Q V + + +L Sbjct: 1 MSTLTKPN----HMGRKISRIRELKDMKQEALAQAMGTNQQTV-SILENSEEIDDEKLAE 55 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKII 120 +++ L + + S + + ++ P G Q +F +D V+V ++ Sbjct: 56 VAKALGVSVEAIKNFSDEGVINYFNTFSDNS-INQGPIGNQNICHFNPLDKLVEVYEENK 114 Query: 121 ELVRSIVSSEKKYRTIEEECMVEQ 144 +L ++ SE+ E+ + + Sbjct: 115 KLYERLLKSEQDKIEYLEKLLKAK 138 >gi|75762482|ref|ZP_00742345.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228901189|ref|ZP_04065390.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] gi|74490035|gb|EAO53388.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228858439|gb|EEN02898.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] Length = 122 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 31/63 (49%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ IRL R G++QE+L E + + + E+G + LQ I+ LE Sbjct: 11 VGENIRLLRKKRGLTQEELAERINLQQAYIGGVERGERNISMLTLQKIAVGLEVSPEKVL 70 Query: 75 DVS 77 ++S Sbjct: 71 NLS 73 >gi|116670514|ref|YP_831447.1| XRE family transcriptional regulator [Arthrobacter sp. FB24] gi|116610623|gb|ABK03347.1| transcriptional regulator, XRE family with cupin sensor [Arthrobacter sp. FB24] Length = 194 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 2/110 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R+R R ++ + G++ + + E G R L ++ + Sbjct: 6 DDVLGAVGPRLRALRTERNLTLGDVSSASGVSVSTLSRLESGQRRPNLELLLPLARMYGV 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVR 116 P+ PT I + + P + + F + R Sbjct: 66 PLDDLVGAPPTGDPRIHLQPITHGGMTAVPLTRRPGGLQAFKMVLTGDAR 115 >gi|330825357|ref|YP_004388660.1| helix-turn-helix domain-containing protein [Alicycliphilus denitrificans K601] gi|329310729|gb|AEB85144.1| helix-turn-helix domain protein [Alicycliphilus denitrificans K601] Length = 81 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PV +G IR R G+SQE L + + E+GV G + I+ ++ Sbjct: 11 DPVLTALGDAIRRSRRARGISQEDLAHVSAVDRSYMSSIERGVQNPGLVSIVRIARAMDM 70 Query: 69 PISFFFDVSP 78 ++ + Sbjct: 71 TVTELMAEAE 80 >gi|227507976|ref|ZP_03938025.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192550|gb|EEI72617.1| XRE family transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 196 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 32/86 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R ++Q +L L ++ + +E G L I+ + P+ Sbjct: 7 ENLKFFRKQNHLNQNQLAIKLNVSRPTISSWETGRTTPDIDTLVRIASFYQVPVDQLLFT 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 +I+ + +++ + ++ Sbjct: 67 RSHSKGNINKSQKHILGILLMILIIE 92 >gi|160935724|ref|ZP_02083099.1| hypothetical protein CLOBOL_00614 [Clostridium bolteae ATCC BAA-613] gi|158441468|gb|EDP19178.1| hypothetical protein CLOBOL_00614 [Clostridium bolteae ATCC BAA-613] Length = 194 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I R GM+Q+ L + I+ + + K+E+G S L+ +S++L I Sbjct: 6 VGNLIYTLRTEKGMTQKALANAMNISDRTISKWERGAGCPDVSLLRELSDILGVNIEKIL 65 Query: 75 DVSPTV 80 Sbjct: 66 LGDLEP 71 >gi|2444013|gb|AAB71491.1| ORF6 [Bacillus pumilus] Length = 211 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G I +R L +SQE + E LG++ Q + K+E + L ++E+ +S I Sbjct: 2 MSLGSNISNKRKSLKLSQEYVAEQLGVSRQAISKWETNQSEPSMDNLIRLAELFDSDIKE 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 VSP S+ + ++ +Q++ F +I Sbjct: 62 L--VSPEQYSEEQKDLETRIEHGQKDIKMQMSAVFGRI 97 >gi|60682937|ref|YP_213081.1| putative DNA-binding protein [Bacteroides fragilis NCTC 9343] gi|60494371|emb|CAH09167.1| putative DNa-binding protein [Bacteroides fragilis NCTC 9343] Length = 140 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 8/122 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ +G+ ++ R + G +QE++ + + I YE G + + L+ IS + Sbjct: 27 VNQIIGENLKKIRELSGFTQEQVAQSIKIERSTYSNYEGGTREIPYTILEDISNLFGCEP 86 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F+ + ++I + + + L+ F I ++ + I +E Sbjct: 87 FILFEDNIQTNNEIMATAFRISNLGEND--LKEIAAFKDIVKSYLK------MERIAQNE 138 Query: 131 KK 132 + Sbjct: 139 AE 140 >gi|114567063|ref|YP_754217.1| XRE family transcriptional regulator [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337998|gb|ABI68846.1| putative transcriptional regulator, XRE family [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 359 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 28/76 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +RI R MSQ L E G+ + +YE G L +S L P + Sbjct: 1 MTISERINKLRKERNMSQALLAERAGLKAPAISQYESGARSPSFESLIKLSSALGVPSDY 60 Query: 73 FFDVSPTVCSDISSEE 88 + SS+ Sbjct: 61 LLLGEEAAPYEESSDS 76 >gi|326405605|gb|ADZ62676.1| transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis CV56] Length = 107 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ R + +SQE+L + + I+ Q + K+E G + ++ +SE+ + + Sbjct: 1 MEISQIIKENRKMKNLSQEELAKKMHISRQSISKWETGKSLPTTGQIILLSEIFDCSLDT 60 Query: 73 FFDVSPTVCSDISSEENN 90 + E ++ Sbjct: 61 LLKGDKKMEEKAKHEIDD 78 >gi|294679158|ref|YP_003579768.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477974|gb|ADE87361.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 133 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 1/117 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+ R G+S + CLGI+ + +E+ AS I+ + +++ Sbjct: 17 LGDRLTAARENAGLSCAEAASCLGISVETYTSWEQDSAFPRASLCHMIAGLFGVSLAWLL 76 Query: 75 DVSPTVCSDISSEENNVMDFI-STPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 ++ + ST L+ R + ++V+Q L R ++ E Sbjct: 77 TGESLGVEPPQNDLPAQGPCLPSTDADLRCMREDMAETRLRVQQIDERLQRILLHLE 133 >gi|256960587|ref|ZP_05564758.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|293384412|ref|ZP_06630293.1| putative helix-turn-helix protein [Enterococcus faecalis R712] gi|293389773|ref|ZP_06634215.1| putative helix-turn-helix protein [Enterococcus faecalis S613] gi|312906563|ref|ZP_07765564.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312910745|ref|ZP_07769584.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|256951083|gb|EEU67715.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|291078260|gb|EFE15624.1| putative helix-turn-helix protein [Enterococcus faecalis R712] gi|291080931|gb|EFE17894.1| putative helix-turn-helix protein [Enterococcus faecalis S613] gi|310627432|gb|EFQ10715.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|311289008|gb|EFQ67564.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] Length = 257 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 29/60 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR+ +QE++ + L +T Q V K+E G + L +S++ I SP Sbjct: 7 LKTRRITNHYTQEQIAQKLHVTTQAVSKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 >gi|300861593|ref|ZP_07107677.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|295114549|emb|CBL33186.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] gi|300849054|gb|EFK76807.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|315144082|gb|EFT88098.1| helix-turn-helix protein [Enterococcus faecalis TX2141] Length = 257 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR+ +QE++ + L +T Q + K+E G + L +S++ I SP Sbjct: 7 LKTRRINNHYTQEQIAQKLHVTTQAISKWETGQSIPSIDNLLMLSDLYNVSIDELIQGSP 66 >gi|160893069|ref|ZP_02073857.1| hypothetical protein CLOL250_00614 [Clostridium sp. L2-50] gi|156865152|gb|EDO58583.1| hypothetical protein CLOL250_00614 [Clostridium sp. L2-50] Length = 222 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 38/88 (43%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +K + I++G+ I R G +Q++L E L I+ + V K+E G S L + + Sbjct: 9 RKEADMDQISIGRFIAAERKRKGCTQKQLAEKLNISDKTVSKWECGKGFPEVSLLLPLCK 68 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVM 92 L+ ++ + + + M Sbjct: 69 ELDITVNELLSGARVSEEEYQKKAEENM 96 >gi|149020301|ref|ZP_01835193.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP23-BS72] gi|147930603|gb|EDK81585.1| prophage Sa05, DNA-binding protein [Streptococcus pneumoniae SP23-BS72] Length = 198 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/147 (12%), Positives = 52/147 (35%), Gaps = 23/147 (15%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +SQ+++ E LG + + Q+ E G +++ + Q +++ ++ Sbjct: 2 NRLKELRQEKKLSQKEIAETLGFSLRSFQRMENGESQIKPEKAQLLADYFGVSVANLLGY 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL-------------- 122 + + S + R + ++ R+ ++ L Sbjct: 62 ENNFIESVKNLSQKDG---SDEVFFKAFRAYYELKTADGRENLLTLKDEDFLNKYREEIL 118 Query: 123 ------VRSIVSSEKKYRTIEEECMVE 143 ++ + E + +E+ + E Sbjct: 119 KNLIPNIKELSKQEIEKYLSDEKLLNE 145 >gi|120435259|ref|YP_860945.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] gi|117577409|emb|CAL65878.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] Length = 95 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 34/72 (47%), Gaps = 2/72 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R GM+Q++L + I+ + + E + + I + LE P+S+ Sbjct: 1 MEIGSAVKILRKSRGMTQKELADLCDISVNALSQIEINSSFPQKQTIHKICKALEYPVSY 60 Query: 73 --FFDVSPTVCS 82 FF +S Sbjct: 61 LLFFSISEEDIP 72 >gi|121593920|ref|YP_985816.1| helix-turn-helix domain-containing protein [Acidovorax sp. JS42] gi|120606000|gb|ABM41740.1| helix-turn-helix domain protein [Acidovorax sp. JS42] Length = 90 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PV I +G IR R G+SQE+L I + E+G G + I++ +E Sbjct: 20 DPVLIALGGAIRRSRRARGISQEELAHRSAIDRSYMSSIERGGQNPGIVSIARIAKAMEM 79 Query: 69 PISFFFDVSP 78 ++ + Sbjct: 80 SMTELMAEAE 89 >gi|90577969|ref|ZP_01233780.1| putative transcriptional regulator, HTH_3family protein [Vibrio angustum S14] gi|90441055|gb|EAS66235.1| putative transcriptional regulator, HTH_3family protein [Vibrio angustum S14] Length = 208 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R+ LG++ E+ + G+ + K E +Q ++ L I F Sbjct: 29 LGERLKEIRVSLGLTLEEASKRTGLARSTLSKIENEQISPTFQAMQKLATGLAIDIPQLF 88 Query: 75 DVSPTVCSDISSEENNVMD 93 + T+ + + + Sbjct: 89 EPPKTITASGRRDITRYGE 107 >gi|23016781|ref|ZP_00056533.1| COG0703: Shikimate kinase [Magnetospirillum magnetotacticum MS-1] Length = 290 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 47/114 (41%), Gaps = 4/114 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R++ R GMS++ L GI+ + + + E G V + L +++ +++ I+ Sbjct: 12 RRLGDRVKAFRARRGMSRKDLSSHAGISERYLAQLEGGQANVSVNILWLLAQAMDTAITD 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ----LNRYFIQIDDVKVRQKIIEL 122 + +D ++ + L + F + +K R +I L Sbjct: 72 LIEAESETGHPDLPLAKKFLDQLNPDQQSEAYVLLRQNFKRGLKLKRRVALIGL 125 >gi|330996840|ref|ZP_08320709.1| DNA-binding helix-turn-helix protein [Paraprevotella xylaniphila YIT 11841] gi|329572283|gb|EGG53942.1| DNA-binding helix-turn-helix protein [Paraprevotella xylaniphila YIT 11841] Length = 117 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 8/122 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ ++ R + G +QE++ + +GI YE G V L+ IS + Sbjct: 4 INQIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYEGGTREVPYDILERISNMFGCEP 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F+ + ++I + + D +I + K K + I +E Sbjct: 64 FILFEDNIQADNEIMATAFRISDLEDND--------LKEIANFKDIVKSYLKMERIAQNE 115 Query: 131 KK 132 + Sbjct: 116 AE 117 >gi|323142495|ref|ZP_08077315.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413072|gb|EFY03971.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 97 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIRL R ++Q L + +GI+ + E G V L + +LE +S FF Sbjct: 8 IGRRIRLLRTAKNLTQTGLAKEMGISQTHLCNIECGRVPVTLPNLLKLHSLLECNMSSFF 67 Query: 75 DVSPTVCSDISSEEN 89 + + Sbjct: 68 VDLDEQADAKDKDIS 82 >gi|268611271|ref|ZP_06144998.1| AMP-dependent synthetase and ligase [Ruminococcus flavefaciens FD-1] Length = 783 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 2/117 (1%) Query: 1 MVGNKKIPNPVD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M N N + V +RI L R LG+S E++ + + +K E G + Sbjct: 1 MSENLNYQNAENRIKEVAQRIALLREDLGISVEEMAAVTDYSVDEYKKLESGEQDFSFTF 60 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + + I+ + S S + I G NR + + V Sbjct: 61 IYKCANRFNVEITELMEGSSPELSGYTVTRKGEGVPIVRRKGFTYNRLAARFKNKSV 117 >gi|167841812|ref|ZP_02468496.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia thailandensis MSMB43] Length = 191 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 45/109 (41%), Gaps = 6/109 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +++G +IR L ++ ++ GI+ + + E+G R + L I++ L + Sbjct: 11 VAVSLGNKIRALWQRLKLTLDETATTAGISKPFLSQVERGRARPSITSLVRIAKALGVTM 70 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +F D S + F ++ F ++ ++ +K+ Sbjct: 71 QYFIDTPTEAGSVCRGDALQYFQFANS------ASSFARLTNLVDGRKL 113 >gi|28211763|ref|NP_782707.1| transcriptional regulator [Clostridium tetani E88] gi|28204205|gb|AAO36644.1| transcriptional regulator [Clostridium tetani E88] Length = 136 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 29/64 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I+ R ++QE+L +G++ V YE + L I++ + + + Sbjct: 5 LGKKIKSLRKDNKITQEELAIKIGVSTSMVGMYETDARKPSYEVLIKIADYFKVSLDYLL 64 Query: 75 DVSP 78 + Sbjct: 65 RETE 68 >gi|330943932|gb|EGH46140.1| RtrR protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 133 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G+RIR +R +SQ+ L I + + E+G + +L I+ VL Sbjct: 59 DKLAKALGRRIRTQRKACQISQDALALACNIDRSYMGRIERGEVNITVEKLYRIAGVLAC 118 Query: 69 PISFFF 74 S Sbjct: 119 DPSGLL 124 >gi|322418240|ref|YP_004197463.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18] gi|320124627|gb|ADW12187.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18] Length = 206 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 44/111 (39%), Gaps = 2/111 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+++R R ++ + L + G++ + + E + L I++ L+ I + Sbjct: 19 MKLGEKVRGLRQEQRLTLQALADMTGLSKPLLSQIENDQVTPPIATLLKIAKGLKVGIHY 78 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR--YFIQIDDVKVRQKIIE 121 FF+ + + + G + Y + +RQK +E Sbjct: 79 FFEEAGDRQKFVLTRGEQPPLGSQRRPGKDSVQQGYMYKPLAPGMRQKKVE 129 >gi|238909167|ref|YP_002939634.1| hypothetical protein EUBELI_10063 [Eubacterium eligens ATCC 27750] gi|238873404|gb|ACR73113.1| Hypothetical protein EUBELI_10063 [Eubacterium eligens ATCC 27750] Length = 69 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 28/64 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R R G + + + + G T + ++E G A+ L ++++ + Sbjct: 4 IEETLAHNLREVREKKGYTLKDVVKGTGYTEVSISRWETGTRIPKATVLYNLAKFYGVSV 63 Query: 71 SFFF 74 FF Sbjct: 64 DRFF 67 >gi|229160788|ref|ZP_04288779.1| Transcriptional regulator, MerR [Bacillus cereus R309803] gi|228622636|gb|EEK79471.1| Transcriptional regulator, MerR [Bacillus cereus R309803] Length = 181 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 37/96 (38%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK+I +R G++ ++L IT + + E+G L+ +++ L+ P Sbjct: 3 NIDIGKKIEKQRKEKGLTSKELARMAEITPSMLSQIERGSANPSIQTLKVLAKALDVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F I I L+ F Sbjct: 63 SFLLEETNTDDLIVRSHKRKKMIIDNLSYEMLSPDF 98 >gi|225570864|ref|ZP_03779887.1| hypothetical protein CLOHYLEM_06968 [Clostridium hylemonae DSM 15053] gi|225160326|gb|EEG72945.1| hypothetical protein CLOHYLEM_06968 [Clostridium hylemonae DSM 15053] Length = 183 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 5/109 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+++ V K IR R +S E+L + ++ + + E+G S L IS ++ Sbjct: 2 DPMNMIVAKNIRRLREENKLSMEELSKLSSVSKSMLAQIERGEANPTISTLWKISNGMKV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 P + + + + + G + + D + R+ Sbjct: 62 PFDHL---TVRPKTSYEIVNTSEIQPLLEDGGR--VKNYPVFPDDENRR 105 >gi|224542166|ref|ZP_03682705.1| hypothetical protein CATMIT_01341 [Catenibacterium mitsuokai DSM 15897] gi|224524934|gb|EEF94039.1| hypothetical protein CATMIT_01341 [Catenibacterium mitsuokai DSM 15897] Length = 121 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 12/105 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K +++ R G++QE + E L + Q + K+EKG++ A L ++E+L+ +S Sbjct: 1 MLSKNLKIFRKRKGLTQENVAEALNVVRQTISKWEKGISVPDADMLIKLAEILDVSVSKL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + ++L R Q+ R K Sbjct: 61 IGSDVADEKNE------------DMIAVELARVVEQLASRNRRSK 93 >gi|223985950|ref|ZP_03635985.1| hypothetical protein HOLDEFILI_03291 [Holdemania filiformis DSM 12042] gi|223962074|gb|EEF66551.1| hypothetical protein HOLDEFILI_03291 [Holdemania filiformis DSM 12042] Length = 94 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R M+Q++L + +G++ Q + + E+ + +I++V I FD Sbjct: 32 SKIHVYRATKRMTQQELADLVGVSRQTIMQLERNRYNPSMLLVYNIAKVFGVTIEDLFDF 91 Query: 77 SP 78 Sbjct: 92 EE 93 >gi|167749537|ref|ZP_02421664.1| hypothetical protein EUBSIR_00495 [Eubacterium siraeum DSM 15702] gi|167657461|gb|EDS01591.1| hypothetical protein EUBSIR_00495 [Eubacterium siraeum DSM 15702] Length = 380 Score = 47.5 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 40/97 (41%), Gaps = 1/97 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N + + +G+ ++ R+ ++QE+L + LG++ Q V ++E G + L Sbjct: 4 TEENTMLN-LGLKLGENLKKFRLQRELTQEQLADVLGVSAQAVSRWENGSTYPDITLLPT 62 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 I+ E + + + E ++ + Sbjct: 63 IASYFEITLDELMGMENWRSEEQLKELLGQLEENGSK 99 >gi|322375904|ref|ZP_08050415.1| putative repressor protein [Streptococcus sp. C300] gi|321279172|gb|EFX56214.1| putative repressor protein [Streptococcus sp. C300] Length = 228 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 53/126 (42%), Gaps = 28/126 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + +L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEQLGISFQAYSAWERGIKEPSKEKVAQLENILKVAKGYF--- 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE--KKYR 134 +++ R + + + + K++ R++ E +K Sbjct: 62 ----------------------TQIEIVRLYNSLSK-QGKDKVVLYARNLAQEEQTQKVA 98 Query: 135 TIEEEC 140 T+ E Sbjct: 99 TMPERL 104 >gi|312870378|ref|ZP_07730503.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] gi|311094079|gb|EFQ52398.1| DNA-binding helix-turn-helix protein [Lactobacillus oris PB013-T2-3] Length = 126 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 12/107 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--- 73 +++ R G+SQE+L + L ++ Q + K+E G ++ I+ +L + Sbjct: 6 QQLTKLRQAAGLSQEQLADQLHVSRQAISKWENGSALPDIEKIIQIASILHVSLDELVLA 65 Query: 74 ---------FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 D + +EN+ L RY+ I Sbjct: 66 KEPAVSQSKLDRLIDAHIQQNQQENHWRYQEINNGWEFLARYWWIIP 112 >gi|262280383|ref|ZP_06058167.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] gi|262258161|gb|EEY76895.1| conserved hypothetical protein [Acinetobacter calcoaceticus RUH2202] Length = 209 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 35/93 (37%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V +VG IR R G+SQ+ L + G++ + + E G + ++L I+ VL Sbjct: 31 STVLQHVGTNIRSLRDERGLSQQDLADQAGVSRRTIAALETGQVNISLAKLDAIAAVLSV 90 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 + + + + L Sbjct: 91 DFRTIVSAPELKEQTLVNVLAWQGNKEESKATL 123 >gi|256379464|ref|YP_003103124.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255923767|gb|ACU39278.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 79 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 9/87 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 MV ++ N IR R GM+Q +L E +G+T Q V E+G Sbjct: 1 MVKPTRVTNS--------IRSLRFARDGMTQAELAERVGVTRQTVIAIEQGRYSPSLEMA 52 Query: 60 QHISEVLESPISFFFDVSPTVCSDISS 86 I+ V + P+ F + + Sbjct: 53 FRIARVFKVPLDDVFHYPEGDVGEGET 79 >gi|240142150|ref|YP_002966660.1| putative transcriptional regulator [Methylobacterium extorquens AM1] gi|240012094|gb|ACS43319.1| Putative transcriptional regulator [Methylobacterium extorquens AM1] Length = 106 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 16/112 (14%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G RI+ R M+ ++L G + + K R A +L I+ L + + Sbjct: 4 GPRIKELRTAKRMTLDQLAAATGSSKSYVWELENKNPPRPSAEKLSAIAAALGVTVDYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 D + R + + ++++ E+ +++ Sbjct: 64 GSDSQSLGDAQDQAFF--------------REYSGLH-PDTKRQLREIAKTL 100 >gi|212640061|ref|YP_002316581.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212561541|gb|ACJ34596.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 81 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 31/81 (38%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N + V +G IR R L +SQE+L G+ + E+G + L Sbjct: 1 MRNINDRDKVLKIIGNNIRSIRTSLNLSQEELAFESGLHRTYIGAVERGEKNITILNLIK 60 Query: 62 ISEVLESPISFFFDVSPTVCS 82 I+ LE + D+ Sbjct: 61 IANALEVRVQDLLDLDKEEDK 81 >gi|218896313|ref|YP_002444724.1| transcriptional regulator SinR [Bacillus cereus G9842] gi|218541453|gb|ACK93847.1| transcriptional regulator SinR [Bacillus cereus G9842] Length = 107 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPFIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T +++ SE V D +++ + R F Sbjct: 61 LLHDETTKATNLDSEWTQLVKDAMNSGVSKEQFREF 96 >gi|9858108|gb|AAG00996.1|AF287346_1 regulator SinR [Bacillus thuringiensis] Length = 107 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T +++ SE V D +++ + R F Sbjct: 61 LLHDDTTKETNLDSEWTQLVKDAMNSGVSKEQFREF 96 >gi|322386543|ref|ZP_08060170.1| XRE family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269462|gb|EFX52395.1| XRE family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 169 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 31/81 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G SQE+L E + ++ Q + K+E G ++ +S++ + + Sbjct: 2 MKLADKLFELRKEKGWSQERLAEQISVSRQSISKWESGQALPELEKIVELSKIFQVTTDY 61 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + D Sbjct: 62 LLLEDSDKPEIKPILSEDEKD 82 >gi|317488752|ref|ZP_07947286.1| hypothetical protein HMPREF1023_00984 [Eggerthella sp. 1_3_56FAA] gi|316912122|gb|EFV33697.1| hypothetical protein HMPREF1023_00984 [Eggerthella sp. 1_3_56FAA] Length = 112 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 44/106 (41%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K + +++ + +R+ R G SQE+L E LG++ Q V K+E+ + L Sbjct: 1 MSPTSKKGSFMNVEIAQRLAAMRREQGYSQEELAERLGLSRQAVSKWERAESSPDTGNLI 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 ++++ + + V D++ EE + R Sbjct: 61 ALAKLYGVSLDDLLRIDDDVVDDVAFEEKDKDATAEAQAQEAAVRA 106 >gi|306823918|ref|ZP_07457292.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|309802457|ref|ZP_07696564.1| DNA-binding helix-turn-helix protein [Bifidobacterium dentium JCVIHMP022] gi|304552916|gb|EFM40829.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|308221057|gb|EFO77362.1| DNA-binding helix-turn-helix protein [Bifidobacterium dentium JCVIHMP022] Length = 408 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 30/85 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R M+QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ENLQYLRGTRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGVTLDDLVMG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 + E S G+ Sbjct: 65 DVRRPNSGIRESTADTSTNSGSVGV 89 >gi|291536229|emb|CBL09341.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 98 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 31/73 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +I+ R ++Q +L + L IT V +E G++ + L ++ + F Sbjct: 1 MIADKIKRLREASHLTQTELAKKLNITRSSVNAWEMGISVPSTTYLIELALLFHVSTDFL 60 Query: 74 FDVSPTVCSDISS 86 + DIS+ Sbjct: 61 LGLEQNNTIDIST 73 >gi|258646905|ref|ZP_05734374.1| toxin-antitoxin system, antitoxin component, Xre family [Dialister invisus DSM 15470] gi|260404347|gb|EEW97894.1| toxin-antitoxin system, antitoxin component, Xre family [Dialister invisus DSM 15470] Length = 262 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 5/74 (6%) Query: 1 MVGNKKIPNPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+ NK ++ ++G +I++ R LG+S E+ G+ T V +E G RL Sbjct: 1 MIKNK----FINKEHLGLKIKILRYKLGLSMEEFGKIFNATKGSVSGWESGKVIPNIERL 56 Query: 60 QHISEVLESPISFF 73 ++E+ PI+ Sbjct: 57 HQMAEMENIPITEL 70 >gi|257463085|ref|ZP_05627486.1| MerR family transcriptional regulator [Fusobacterium sp. D12] gi|317060684|ref|ZP_07925169.1| transcriptional regulator [Fusobacterium sp. D12] gi|313686360|gb|EFS23195.1| transcriptional regulator [Fusobacterium sp. D12] Length = 182 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 39/92 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I+ R +S +L + ++ + + E+G L+ I+ L+ +S+ Sbjct: 1 MSIGEKIKKSRNEKSLSLRELAVKVDLSASFLSQIEQGKASPSIENLKKIATALDVRVSY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + ++ N+ S ++ Sbjct: 61 LIEDDEVQKNVDFVKKENIKYIESRDSNTKMA 92 >gi|229176551|ref|ZP_04303977.1| Transcriptional regulator [Bacillus cereus MM3] gi|228606907|gb|EEK64303.1| Transcriptional regulator [Bacillus cereus MM3] Length = 115 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 29/71 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I+ R ++QE+L + G++ Q++ +E + L+ ++ + Sbjct: 5 VGQNIKRLRKSFDLTQEQLSDRTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTDALL 64 Query: 75 DVSPTVCSDIS 85 + + Sbjct: 65 NFEDRKEDALL 75 >gi|171741654|ref|ZP_02917461.1| hypothetical protein BIFDEN_00740 [Bifidobacterium dentium ATCC 27678] gi|283455032|ref|YP_003359596.1| Xre-type transcriptional regulator [Bifidobacterium dentium Bd1] gi|171277268|gb|EDT44929.1| hypothetical protein BIFDEN_00740 [Bifidobacterium dentium ATCC 27678] gi|283101666|gb|ADB08772.1| Xre-type transcriptional regulator [Bifidobacterium dentium Bd1] Length = 408 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 30/85 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R M+QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ENLQYLRGTRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGVTLDDLVMG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 + E S G+ Sbjct: 65 DVRRPNSGIRESTADTSTNSGSVGV 89 >gi|168184062|ref|ZP_02618726.1| phosphoserine phosphatase [Clostridium botulinum Bf] gi|237794132|ref|YP_002861684.1| HTH domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182672824|gb|EDT84785.1| phosphoserine phosphatase [Clostridium botulinum Bf] gi|229261321|gb|ACQ52354.1| HTH domain protein [Clostridium botulinum Ba4 str. 657] Length = 381 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 13/139 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I +R G++QE+L +G++ V K+E G++ L ++ + Sbjct: 6 IGKCIIHKRKEKGITQEQLANYIGVSKASVSKWESGLSYPDILFLPELATYFNISMDELL 65 Query: 75 DVSPTVCSD--------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL---V 123 SP + + +S E +L + + + II+L Sbjct: 66 GYSPQLTKEDIKKIYSKLSHEFAVKPFDEVMEQCNKLIKKYYSCFPFLL--SIIQLLLNY 123 Query: 124 RSIVSSEKKYRTIEEECMV 142 +++ ++ + I ++C++ Sbjct: 124 SNLIKNDAIKKEIFQQCIL 142 >gi|15671989|ref|NP_266163.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|281490506|ref|YP_003352486.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|12722843|gb|AAK04105.1|AE006240_3 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|281374324|gb|ADA63857.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] Length = 107 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ R + +SQE+L + + I+ Q + K+E G + ++ +SE+ + + Sbjct: 1 MEISQIIKENRKMKNLSQEELAKKMHISRQSISKWETGKSLPTTDQIILLSEIFDCSLDT 60 Query: 73 FFDVSPTVCSDISSEENN 90 + E ++ Sbjct: 61 LLKGDKKMEEKAKHEIDD 78 >gi|329667149|gb|AEB93097.1| transcriptional regulator, XRE family [Lactobacillus johnsonii DPC 6026] Length = 114 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 32/98 (32%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R G+SQ +L + LGI + YE L I++ + + Sbjct: 4 LGENISNLRKSRGLSQAQLADRLGIATSTLGMYETNKREPSNQTLLLIADFFDKTVDELL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + + ++ LN F + Sbjct: 64 GRQTSTHTSTELNYEDLGLPYKGVISEDLNDTFRLLAQ 101 >gi|317488770|ref|ZP_07947304.1| hypothetical protein HMPREF1023_01002 [Eggerthella sp. 1_3_56FAA] gi|316912140|gb|EFV33715.1| hypothetical protein HMPREF1023_01002 [Eggerthella sp. 1_3_56FAA] Length = 124 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 33/92 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R R G++QE+LG +G ++ E+G + + LE+ Sbjct: 24 LGENLRQLRKAQGLTQERLGLMIGTGHSRISNIERGRVVPSVPDMIKLCRALEADPVELV 83 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 D + SD + + P Sbjct: 84 DTAAFKLSDFPERQQGHARLYAPPPRPAEATA 115 >gi|239627346|ref|ZP_04670377.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517492|gb|EEQ57358.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 183 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 5/109 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +++ V K IR R +S ++L + G++ + + E+G S L +S ++ Sbjct: 2 DSMNLIVAKNIRRLREENKLSMDELSKLSGVSKSMLAQIERGEGNPTISTLWKLSNGMKV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 P + S + + + G + + D + R+ Sbjct: 62 PFDAL---TVRPKSPYEIVDTAELQPLLEDGGK--VKNYSIFPDDENRR 105 >gi|218752098|ref|ZP_03530894.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] Length = 93 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 31/80 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G SQ L + L I+ + + E V + + L I+EV +FF Sbjct: 5 YVGSRVRQLRNERGFSQAALAQMLEISPSYLNQIEHDVRPLTVAVLLRITEVFGVDATFF 64 Query: 74 FDVSPTVCSDISSEENNVMD 93 T E D Sbjct: 65 ASQDDTRLVAELREVTLDRD 84 >gi|212709228|ref|ZP_03317356.1| hypothetical protein PROVALCAL_00263 [Providencia alcalifaciens DSM 30120] gi|212688140|gb|EEB47668.1| hypothetical protein PROVALCAL_00263 [Providencia alcalifaciens DSM 30120] Length = 83 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 40/64 (62%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + ++G ++R RR++LG S LG+ G++ QQ+ +YE+G SRL + VL+ ++ Sbjct: 10 NTDIGAKVRKRRLLLGWSASILGKKTGLSQQQISRYERGTQNFTISRLCIFANVLQCDLN 69 Query: 72 FFFD 75 +F + Sbjct: 70 YFLE 73 >gi|254447927|ref|ZP_05061391.1| helix-turn-helix domain protein [gamma proteobacterium HTCC5015] gi|198262353|gb|EDY86634.1| helix-turn-helix domain protein [gamma proteobacterium HTCC5015] Length = 363 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 1/94 (1%) Query: 14 NVGKRIRLRRMILGMS-QEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +RIR R + GM+ QE + GI+ Q + KYEKG + ++RL +++VL + Sbjct: 1 MLHERIRRARALKGMTLQEVADQIGGISKQAISKYEKGKDAPNSTRLIQLADVLGVKPEY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 FF ++ +++ + R Sbjct: 61 FFRADSVELGEVDFRKHSAFGKRQQEVVKERVRE 94 >gi|253700937|ref|YP_003022126.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251775787|gb|ACT18368.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 188 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/124 (11%), Positives = 49/124 (39%), Gaps = 2/124 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R+ ++ + + G + + + E + L I++ + ++ FF Sbjct: 7 IGPRIKKLRLARKLTLQAVANETGFSPALISQIENDNVSPPIATLSKIAKFFDVKLAQFF 66 Query: 75 DVSPTVC--SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + +++ ++ + + +G + ++ + K +K+ + ++ + Sbjct: 67 SEDEDNRKFEVVRADQRTIVPRVISKEGTRQGYFYESLSFYKQNKKMDAFMVTLTEKAPE 126 Query: 133 YRTI 136 T Sbjct: 127 ANTY 130 >gi|90581518|ref|ZP_01237311.1| hypothetical transcriptional regulator [Vibrio angustum S14] gi|90437280|gb|EAS62478.1| hypothetical transcriptional regulator [Vibrio angustum S14] Length = 213 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 55/127 (43%), Gaps = 9/127 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ + G+SQ++LGE L + + + G + L+ I++ L + I + Sbjct: 5 ERIKRLAKVQGISQKQLGEALDLQQGTMSRKLSGKYGIEVRELEKIADTLNTSIGYILTG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN--RYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + ++ + +D +T + + + F +D + I + R+I ++ Sbjct: 65 QVDTGTQATTTISTELDSAATCTYIPVIHRKDFSAYNDGSSVEVISK--RAIPQHLER-- 120 Query: 135 TIEEECM 141 EEC+ Sbjct: 121 ---EECL 124 >gi|42525598|ref|NP_970696.1| DNA-binding protein [Treponema denticola ATCC 35405] gi|41815609|gb|AAS10577.1| DNA-binding protein [Treponema denticola ATCC 35405] Length = 191 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 34/69 (49%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +DI++G +IR R + +S +++ + LG+++ + E V + LQ I+ + + Sbjct: 1 MDISIGSKIRALRKVRSISLQQMAKDLGMSYSYLSGLENDKYSVSITNLQKIASYFKVNL 60 Query: 71 SFFFDVSPT 79 F + Sbjct: 61 VSFLTPNGP 69 >gi|75758833|ref|ZP_00738946.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493674|gb|EAO56777.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 130 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 6/119 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + G+ +R+ R + G++ ++LG+ LG+ + +E LQ IS Sbjct: 2 IQNYFGENVRILRTLKGLNMKELGDVLGVASSTISNWENNRKEPSFETLQKISIYFNVST 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVRSI 126 + +++E+ I L + + D + ++IE + + Sbjct: 62 DRLLNHKIGDSEALTTEDRK---IIVERLAQDLYESYKNVPDKDKPLLENELIEYAKYL 117 >gi|320120590|gb|EFE29126.2| GTP pyrophosphokinase [Filifactor alocis ATCC 35896] Length = 271 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 35/70 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G +QEKL E L ++FQ V +E+ + L ++E+L+ +S Sbjct: 1 MNIGMNIRRLREERGFTQEKLAEKLNVSFQAVSAWEREEYKPDLDNLIKLTEILDVSLSA 60 Query: 73 FFDVSPTVCS 82 + T Sbjct: 61 IVEQQETRFQ 70 >gi|148359928|ref|YP_001251135.1| phage repressor [Legionella pneumophila str. Corby] gi|148281701|gb|ABQ55789.1| phage repressor [Legionella pneumophila str. Corby] Length = 220 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G RI R LG++ ++L ++ ++ +E+G G + +++ L Sbjct: 2 DIREQIGNRITKARKELGITIKELAARTAELSPARISNWEQGTRSPGPLEAKLLADQLNV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFI 95 ++ ++ D+ N I Sbjct: 62 SAAYLLCLTDNPQGDLIQNPENRFRHI 88 >gi|17545816|ref|NP_519218.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428110|emb|CAD14799.1| probable transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 113 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I +GKR++ R SQE L + + E+G+ L +I L + Sbjct: 20 ISIALGKRVKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICHCLGVTL 79 Query: 71 SFFF 74 S F Sbjct: 80 SELF 83 >gi|310640682|ref|YP_003945440.1| transcriptional regulator, xre family [Paenibacillus polymyxa SC2] gi|309245632|gb|ADO55199.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2] Length = 122 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 4/113 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R G+ QE+L + LGIT + YEK + L ++++ E I + Sbjct: 4 GTRIAELREHKGLKQEELAQSLGITRAALSHYEKNRRKPDFETLTKLADIFEVTIDYLVG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR----YFIQIDDVKVRQKIIELVR 124 + + + S+ +D + D L R + + ++ I VR Sbjct: 64 RTSHPTAILDSDVREFVDQLELSDENILQRFNLTIDGRTLSEEEAKRFIAFVR 116 >gi|307628247|gb|ADN72551.1| transcriptional regulator, XRE family protein [Escherichia coli UM146] Length = 154 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 43/121 (35%), Gaps = 1/121 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 1 MKKSLRIQFGERVKELRVATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLASAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI-QIDDVKVRQKIIELVRS 125 + +D D L +R + D +++ + + Sbjct: 61 SVEPWQLLVFDSSEENDPELLVPYAADGTCFNPELASSRDGSFAVGDKAAQKRFGSFIEA 120 Query: 126 I 126 + Sbjct: 121 L 121 >gi|288961553|ref|YP_003451863.1| transcriptional regulator [Azospirillum sp. B510] gi|288913833|dbj|BAI75319.1| transcriptional regulator [Azospirillum sp. B510] Length = 188 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 2/124 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R++ R G+SQ L + G+T + E+ + S L+ + + + ++ FF Sbjct: 5 VGARLKQIREQHGLSQRALAQRAGVTNGTISLIEQNRSSPSVSSLRKVLQGIPMSLAEFF 64 Query: 75 DVSP-TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 I + + +++ G F Q+ D++ R I L Sbjct: 65 SSDDLPPPEQIFFKGDELIELAGELKGTVGQVSFRQVGDLRSRNLQI-LHERYAPGADTG 123 Query: 134 RTIE 137 RT+ Sbjct: 124 RTML 127 >gi|271967432|ref|YP_003341628.1| hypothetical protein Sros_6155 [Streptosporangium roseum DSM 43021] gi|270510607|gb|ACZ88885.1| hypothetical protein Sros_6155 [Streptosporangium roseum DSM 43021] Length = 225 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 5/105 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P +G+RI RR LGMS+E+L E I + E+ G S + Sbjct: 1 MTEHISAPGD----LGRRIAHRRKSLGMSREQLAERARIDPGYLGYLEENAASPGTSTVN 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSE-ENNVMDFISTPDGLQLN 104 ++ L + S + ++ + + ++L Sbjct: 57 QLAAALGTSSDELLGGSVDLPPGRGPAGARPHLEKLDPDECMRLI 101 >gi|163758095|ref|ZP_02165183.1| hypothetical protein HPDFL43_00680 [Hoeflea phototrophica DFL-43] gi|162284384|gb|EDQ34667.1| hypothetical protein HPDFL43_00680 [Hoeflea phototrophica DFL-43] Length = 478 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 42/117 (35%), Gaps = 2/117 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R G++Q + E LGI+ + E+ + + +S V + + Sbjct: 9 GPRIRRIRNAKGLTQTAMAEALGISPSYLNLIERNQRPLTVQLILKLSSVYKVDVEELQG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + + + P ++ + II+L R+ ++ Sbjct: 69 EAGGALASLKEVFADPLLAGELPGDQEVVEIAEAAPNAGA--AIIKLHRAYREQAER 123 >gi|92116675|ref|YP_576404.1| XRE family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799569|gb|ABE61944.1| transcriptional regulator, XRE family [Nitrobacter hamburgensis X14] Length = 483 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 2/120 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R LG+SQ ++ E LGI+ V E+ V A L ++E + + Sbjct: 9 LFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDLRD 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV--KVRQKIIELVRSIVSSE 130 +E + F Q R ++ Q++ E Sbjct: 69 LATADEDRFFAELNEVFSDPLFRQIDVPKQELRDLAELCPAVTHALQRLYAAYTEARRGE 128 >gi|323466838|gb|ADX70525.1| Putative uncharacterized protein [Lactobacillus helveticus H10] Length = 251 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 1/121 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + +G R+ R + G++QE++ + I+ Q + EK N + AS L I + + Sbjct: 7 ITMKIGDRLHQVRNLHGLTQEQMAAGI-ISKSQYWRIEKESNAIRASSLIKILNQNKISV 65 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FF + + + + + D +L Q + ++++ + L+ + Sbjct: 66 LTFFKDADDSGINRRELQYQITNAFFARDYKKLEEIKKQSTNSQMKRLLNWLLAELRGES 125 Query: 131 K 131 + Sbjct: 126 Q 126 >gi|301164403|emb|CBW23961.1| putative DNa-binding protein [Bacteroides fragilis 638R] Length = 140 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 8/122 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ +G+ ++ R + G +QE++ + + I YE G + + L+ IS + Sbjct: 27 VNQIIGENLKKIRELSGFTQEQVAQSIKIERSTYSNYEGGTREIPYTILEDISNLFGCEP 86 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F+ + ++I + + + L+ F I ++ + I +E Sbjct: 87 FILFEDNIQTNNEIMATAFRISNLGEND--LKEIAAFKDIVKSYLK------MERIAQNE 138 Query: 131 KK 132 + Sbjct: 139 AE 140 >gi|260427234|ref|ZP_05781213.1| DNA-binding protein [Citreicella sp. SE45] gi|260421726|gb|EEX14977.1| DNA-binding protein [Citreicella sp. SE45] Length = 212 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+++R R M+ +L + G++ + K E GV + LQ ++ L P+ Sbjct: 24 LEVAIGRQVRELRKRQRMTGSELAQQTGLSVGMLSKIENGVISPSLNTLQALANALRVPL 83 Query: 71 SFFFDVSPTVCSDI 84 F + Sbjct: 84 VQLFSGFEEPRGAM 97 >gi|228959512|ref|ZP_04121199.1| hypothetical protein bthur0005_29960 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800192|gb|EEM47122.1| hypothetical protein bthur0005_29960 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 373 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKTIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP--------DGLQLNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + ++ + + + ++ ++ + Sbjct: 64 LICYTPQMGQEDIKNLYHRLAEAFSEEPFDEVMMECREIIKKYYSCFPLLLQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K I EE M Sbjct: 124 HMLTGDTDKRIEILEEAM 141 >gi|257784356|ref|YP_003179573.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257472863|gb|ACV50982.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 210 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 35/70 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R + ++Q +L E +G T Q VQ+YE + ++ +SE+L +++ +S Sbjct: 4 QIAEARKLRNITQAELAEKMGTTQQTVQRYETNQVNIRMDKMIEMSEILNVSLAYLLGMS 63 Query: 78 PTVCSDISSE 87 + S+ Sbjct: 64 SSPEISEVSD 73 >gi|168184227|ref|ZP_02618891.1| transcriptional regulator [Clostridium botulinum Bf] gi|182672749|gb|EDT84710.1| transcriptional regulator [Clostridium botulinum Bf] Length = 136 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 2/93 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I+ R ++QE+LG+ +G+T V YE + L I+E F Sbjct: 1 MLGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIAEFFSVSTDFL 60 Query: 74 FDVSP--TVCSDISSEENNVMDFISTPDGLQLN 104 + + D + +N++ + G++ Sbjct: 61 LNTEEKLDMTLDSVKKIHNMVKEATEKYGIEEV 93 >gi|167751085|ref|ZP_02423212.1| hypothetical protein EUBSIR_02070 [Eubacterium siraeum DSM 15702] gi|167656003|gb|EDS00133.1| hypothetical protein EUBSIR_02070 [Eubacterium siraeum DSM 15702] Length = 384 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 GKR++ R + GMS +L E L + Q V YE G ++Q +S++L PI FF Sbjct: 9 GKRLKTARTLKGMSISELAEALDLQRQTVSMYESGKISNPDFPKVQRMSQLLNFPIDFFL 68 Query: 75 DVSPTVCSDISS 86 + S Sbjct: 69 GSDTELVKAAPS 80 >gi|197118272|ref|YP_002138699.1| transcriptional regulator with cupin-like beta-barrel domain [Geobacter bemidjiensis Bem] gi|197087632|gb|ACH38903.1| transcriptional regulator with cupin-like beta-barrel domain, putative [Geobacter bemidjiensis Bem] Length = 188 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/124 (11%), Positives = 49/124 (39%), Gaps = 2/124 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R+ ++ + + G + + + E + L I++ + ++ FF Sbjct: 7 IGPRIKKLRLARKLTLQAVANETGFSPALISQIENDNVSPPIATLSKIAKFFDVKLAQFF 66 Query: 75 DVSPT--VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + +++ ++ + + +G + ++ + K +K+ + ++ + Sbjct: 67 SEDEDNRRFEVVRADQRTIVPRVISKEGTRQGYFYESLSFYKQNKKMDAFMVTLTEKAPE 126 Query: 133 YRTI 136 T Sbjct: 127 ANTY 130 >gi|157370471|ref|YP_001478460.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157322235|gb|ABV41332.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 187 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 35/95 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ + +R R G S + E G++ + + E+G + + L I+ S F Sbjct: 7 HLAQTLRSLRSQRGWSLAQAAENTGVSKAMLGQIERGESSPTVATLWKIATGFNVAFSAF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 ++SP + F +++ F Sbjct: 67 LEISPLQQQATLHRYGDAPVFNQGNADMRVVPLFP 101 >gi|126699343|ref|YP_001088240.1| putative transcriptional regulator [Clostridium difficile 630] gi|255100870|ref|ZP_05329847.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306758|ref|ZP_05350929.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|115250780|emb|CAJ68604.1| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 181 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+N+G++I R +S L + +T + + E+G+ + L+ I+ L P+ Sbjct: 3 DLNLGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVPLF 62 Query: 72 FFF 74 FF Sbjct: 63 TFF 65 >gi|78043854|ref|YP_360727.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995969|gb|ABB14868.1| DNA-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 107 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R MS+++L + L I++ + KYE + L+ I++ I + + Sbjct: 5 NKIKKLREERKMSRKELADKLQISYWALSKYENNERTPDITLLRKIAQEFGVSIEYLAGL 64 Query: 77 SPTVCSDISS 86 S +S Sbjct: 65 SDENLLPSTS 74 >gi|148544031|ref|YP_001271401.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|148531065|gb|ABQ83064.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] Length = 111 Score = 47.5 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 8/119 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI R MSQ +L + LGI + YE + L I++ + + Sbjct: 1 MSIGNRIADLRTNNHMSQFQLAKVLGIGTSTLGMYETNKRKPSPKVLNKIADYFDVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 ++ + + I + +G + ++ + +L+ S + +++ Sbjct: 61 LLGRKSKADQVHNATVDEALGTIMSFEGQPVT--------EHDKKVMKDLLESYLRNKE 111 >gi|329964525|ref|ZP_08301579.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] gi|328524925|gb|EGF51977.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] Length = 127 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 9/125 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VG+R++L RM ++QE++GE L ++ K E G + +RL I+ +L Sbjct: 1 METDLKKIVGQRLQLLRMEKNLTQEQMGEQLNLSTSAYCKIEYGETDLTLTRLNKIANIL 60 Query: 67 ESPISFFFDVSP-------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + F + ++ ++ + D +L + ++ +++ +K Sbjct: 61 NMSAAELFSKIDGNIYFTNSGSINVGISQDYSNIHTDSSDLRELIKANSKL--IEMLEKR 118 Query: 120 IELVR 124 IE++ Sbjct: 119 IEMLE 123 >gi|322391296|ref|ZP_08064766.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321145722|gb|EFX41113.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 150 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 10/95 (10%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ ++ R ++Q +L LGI+ + +E + ++ + + +F Sbjct: 3 FLGENLKKIRQEHKLTQVELANMLGISQKSYSHWETQKTEPTLENVVKLANIFNTTTDYF 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + +++ ++ + F Sbjct: 63 LGQTIYSKANLVRFLDDYDVSNIKNWTKEERDSFK 97 >gi|314933295|ref|ZP_07840660.1| transcriptional regulator, Cro/CI family [Staphylococcus caprae C87] gi|313653445|gb|EFS17202.1| transcriptional regulator, Cro/CI family [Staphylococcus caprae C87] Length = 179 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G ++R R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MNIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESQHASPSMETFLNILEVLGTSASD 60 Query: 73 FFDVSPTVC 81 FF SP+ Sbjct: 61 FFQESPSKK 69 >gi|296110828|ref|YP_003621209.1| hypothetical protein LKI_03490 [Leuconostoc kimchii IMSNU 11154] gi|295832359|gb|ADG40240.1| hypothetical protein LKI_03490 [Leuconostoc kimchii IMSNU 11154] Length = 162 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 27/74 (36%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ +R M+Q E L ++ + + +E G + I++ L + Sbjct: 7 IKSQRKERKMTQVDFSELLMVSSKTISNWESGRTLPDIDNVILIAKKLNISLDQLLLEDK 66 Query: 79 TVCSDISSEENNVM 92 + ++I + Sbjct: 67 KMINNIKDKAKKQN 80 >gi|295107703|emb|CBL05246.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 143 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 46/130 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R G + E+ E LGI+ ++KYE G + I+ L S Sbjct: 1 MKIGEKIHRIRKERGYTAEQFAEMLGISTVSLRKYEYGERTPKEPMITEIARRLGVNPSS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 +D + + + + + + + L R++ + Sbjct: 61 LKSDWGNDANDAIHMLFELEEAFCLEPIKVGDTVVLTLPEDLGSEDQEALARALRQWYRN 120 Query: 133 YRTIEEECMV 142 R +++ + Sbjct: 121 NRDLKDNELT 130 >gi|262282955|ref|ZP_06060722.1| phage transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262261207|gb|EEY79906.1| phage transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 121 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 5/116 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +NVG+RI+ RR L MS + L E +G++ + +YEKG VG L+ I++ L + Sbjct: 1 MNVGERIKQRRKELKMSADALSERVGVSRSTIFRYEKGDIEKVGPEVLKKIADTLNISPA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID----DVKVRQKIIELV 123 + N + + + F D++ QKIIE+ Sbjct: 61 QLMGWEEQNADRKGAIATNNYNETDLRKMAENAKTFDGKPLNEEDIQAIQKIIEIY 116 >gi|227892270|ref|ZP_04010075.1| XRE family transcriptional regulator [Lactobacillus salivarius ATCC 11741] gi|227865911|gb|EEJ73332.1| XRE family transcriptional regulator [Lactobacillus salivarius ATCC 11741] Length = 220 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I R +Q L E LGIT Q V K+E G + AS + + ++L+ ++ Sbjct: 23 IGKFIAKCRKEQNFTQANLAEKLGITNQAVSKWENGKSMPDASLMLELCQLLKISVNELL 82 Query: 75 DVSP 78 + Sbjct: 83 NGEK 86 >gi|183982165|ref|YP_001850456.1| transcriptional regulator [Mycobacterium marinum M] gi|183175491|gb|ACC40601.1| transcriptional regulator [Mycobacterium marinum M] Length = 180 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 32/83 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E+L + G+T + K E+G + + ++ L+ + F Sbjct: 5 LRAVRRQRGLTLEQLAQRAGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFSDES 64 Query: 79 TVCSDISSEENNVMDFISTPDGL 101 + ++ + S + Sbjct: 65 AHETITVDRAHDRLGPQSGRYHV 87 >gi|160940628|ref|ZP_02087971.1| hypothetical protein CLOBOL_05522 [Clostridium bolteae ATCC BAA-613] gi|158436363|gb|EDP14130.1| hypothetical protein CLOBOL_05522 [Clostridium bolteae ATCC BAA-613] Length = 102 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 3/94 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +RI RM S+ +L E GI + + + + L+ I +S FF Sbjct: 4 INERIIELRMERHWSEYQLAEKSGIGQSTISSWTRTKSMPTVPNLEKICNAFGITLSQFF 63 Query: 75 DVSPTVCSDISSEENNV---MDFISTPDGLQLNR 105 +S + + D ++ L R Sbjct: 64 ADKEERTVSLSPVQQEMLHNFDRLTPEQQENLIR 97 >gi|170732473|ref|YP_001764420.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|254245889|ref|ZP_04939210.1| hypothetical protein BCPG_00612 [Burkholderia cenocepacia PC184] gi|124870665|gb|EAY62381.1| hypothetical protein BCPG_00612 [Burkholderia cenocepacia PC184] gi|169815715|gb|ACA90298.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 221 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 4/100 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R + G + + L G++ + E+ A L ++ L + Sbjct: 29 INERIARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASASPTAIVLDKLAAGLGVSL 88 Query: 71 SFFFDVS----PTVCSDISSEENNVMDFISTPDGLQLNRY 106 + F P +++ D S L+ Sbjct: 89 AALFGGDRGDAPAQPLARRAQQAEWRDPASGYVRRNLSPA 128 >gi|78186413|ref|YP_374456.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166315|gb|ABB23413.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 205 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 31/79 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R G+SQE+L + + V K E G V L +E L + Sbjct: 6 IGQRIKELRGQKGLSQEELARRIAMPRTAVTKIESGSQEVRFRELAKFAEALGISLGTLL 65 Query: 75 DVSPTVCSDISSEENNVMD 93 + V + V D Sbjct: 66 EERRPVRESVEDAFLRVSD 84 >gi|58580009|ref|YP_199025.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|84622006|ref|YP_449378.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166713709|ref|ZP_02244916.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola BLS256] gi|58424603|gb|AAW73640.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365946|dbj|BAE67104.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 66 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G SQ +LGE LG++ Q + E G I+ + I F Sbjct: 3 SRVRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 60 >gi|47564457|ref|ZP_00235502.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] gi|47558609|gb|EAL16932.1| transcriptional regulator, Cro/CI family, putative [Bacillus cereus G9241] Length = 374 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN--------RYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + + + + ++ ++ + Sbjct: 64 LICYTPQMEPEDIKDLYHRLAEAFSERPFDEVMIECRGTIKKYYSCFPLLLQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K + EE M Sbjct: 124 HMLTEDTDKRIEMLEEAM 141 >gi|219855036|ref|YP_002472158.1| hypothetical protein CKR_1693 [Clostridium kluyveri NBRC 12016] gi|219568760|dbj|BAH06744.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 384 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 34/70 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G+S +L E + +T Q + +YEKG+ L+ +S L PI FF+ Sbjct: 14 ARIKEARESRGLSMSELSELIEVTSQAISQYEKGIMNPSVFVLKKMSNALNFPIQFFYKS 73 Query: 77 SPTVCSDISS 86 + S+ Sbjct: 74 ENERTCENSA 83 >gi|254462059|ref|ZP_05075475.1| transcriptional regulator, XRE family [Rhodobacterales bacterium HTCC2083] gi|206678648|gb|EDZ43135.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium HTCC2083] Length = 145 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 10/124 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R MSQ + LGI ++ +E+ ++ A+ L ++ VL + + + Sbjct: 31 GDRLAAAREYAQMSQALMARRLGIRASTLRSWEQDLSEPRANHLSIMAGVLNVSMVWLMN 90 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 +++ ++T + R +R I + + EK+ R Sbjct: 91 GEGEGLDAPNADAAETDADVAT-----ILRDMR-----DLRVTISQSSEKLGRLEKRLRA 140 Query: 136 IEEE 139 ++ Sbjct: 141 ALKD 144 >gi|83593377|ref|YP_427129.1| transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576291|gb|ABC22842.1| Transcriptional Regulator, XRE family with Cupin sensor domain [Rhodospirillum rubrum ATCC 11170] Length = 188 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 2/128 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +VG R+R R +SQ +L G+T + E+ + + L+ + + + + Sbjct: 1 MDFDVGARLRAIREAKALSQRELARRAGVTNGTISLIEQNQSSPSVASLRKVLQGIPMTL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + FF I + + + + + F Q+ D R + L + Sbjct: 61 AEFFSQETPPPDQIVFRPDELAELTNEIQRRNEGAISFRQVGDTS-RHGLQILHETYAPG 119 Query: 130 EKKYRTIE 137 RT+ Sbjct: 120 ADTGRTML 127 >gi|323356598|ref|YP_004222994.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323272969|dbj|BAJ73114.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 197 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R LG+S + L E G++F V + E+G+ LQ ++ L P++ Sbjct: 16 LGAAVRDARKRLGLSVQALSEKAGVSFGLVSQLERGLGNPSLQSLQRLAGALGIPVAQLL 75 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 D + ++ + ++M Q R ++ + + +++L+RS Sbjct: 76 DEPAVPLAVVTRAKRHIMPVAVDAPASQ--RAVRELLTPRG-ESMLQLIRS 123 >gi|313889505|ref|ZP_07823151.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313122117|gb|EFR45210.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 135 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R+ SQ+ L + L I+ Q + K+E G + L ++E+ + + Sbjct: 6 KQLKKYRLEKNYSQDTLADQLFISRQAISKWENGDSTPDLENLVKLAEIFDVTLDQLVRG 65 Query: 77 SPTVCSDISSEENNVMD 93 + S + + Sbjct: 66 KESTSSLDNENSLENDN 82 >gi|300697135|ref|YP_003747796.1| transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299073859|emb|CBJ53386.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 126 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ I VG RI+ R SQE+L + + E+G+ L +I L Sbjct: 36 PILIAVGARIKQCRHAAEKSQERLAFEASVDRTYISSIERGIANPSVETLANICYALNVT 95 Query: 70 ISFFF 74 ++ F Sbjct: 96 LAELF 100 >gi|299134624|ref|ZP_07027816.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298590434|gb|EFI50637.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 485 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 36/100 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R L +SQ ++ E LG++ + E+ V A L ++E + + Sbjct: 11 LFVGPRFRRLRKQLNLSQTQIAEGLGLSPSYINLIERNQRPVTAQMLLRLAETYDLDLRD 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +E + F Q R ++ Sbjct: 71 LATSDEDRFFAELNEIFSDPLFRQIDLPKQELRDLAELCP 110 >gi|260431708|ref|ZP_05785679.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter lacuscaerulensis ITI-1157] gi|260415536|gb|EEX08795.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter lacuscaerulensis ITI-1157] Length = 188 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 3/82 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N + + + R++ R G+S E + G++ V + E+G + S L Sbjct: 1 MTENS---DDILTRLPARLKEARRAKGLSLEAVANLSGVSRSMVSQIERGESSPTISTLW 57 Query: 61 HISEVLESPISFFFDVSPTVCS 82 +++ L+ + + S T Sbjct: 58 NLTRALQVDFAGLLEESETTDQ 79 >gi|256849134|ref|ZP_05554567.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|312977969|ref|ZP_07789715.1| probable transcriptional regulator [Lactobacillus crispatus CTV-05] gi|256713910|gb|EEU28898.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|310895276|gb|EFQ44344.1| probable transcriptional regulator [Lactobacillus crispatus CTV-05] Length = 95 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I+ R ++Q +L E +G+T + + EKG + + + E+ I Sbjct: 1 MIINNKIKEYRKKHQLTQRELAEKVGVTERTIISLEKGRYKPSIVLAYKLVQFFETDIET 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 F ++ V ++ + N F + L Sbjct: 61 LFCLNEYVKNEQAKGRNAYNSFCDSISHTAL 91 >gi|218133061|ref|ZP_03461865.1| hypothetical protein BACPEC_00923 [Bacteroides pectinophilus ATCC 43243] gi|217991934|gb|EEC57938.1| hypothetical protein BACPEC_00923 [Bacteroides pectinophilus ATCC 43243] Length = 225 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 36/82 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R GM+Q++L +GI+ + + K+E G + + L+ + + L ++ Sbjct: 6 IGRFIAETRNQAGMTQKELAGKIGISDKTISKWECGKSMPDITYLETLCDSLAISMNELI 65 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 + S + + + Sbjct: 66 SGERLSDTAYSPKAEENIMSLM 87 >gi|154500312|ref|ZP_02038350.1| hypothetical protein BACCAP_03979 [Bacteroides capillosus ATCC 29799] gi|150271044|gb|EDM98318.1| hypothetical protein BACCAP_03979 [Bacteroides capillosus ATCC 29799] Length = 111 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 2/105 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G+R+R RR LG+++EK+ E I + E G +++ L +S + P+ + Sbjct: 7 IDIGQRLRQRRQDLGLTREKMAELADIGTGYYGQLEVGTSQMSIDTLIKLSHSMHLPMEY 66 Query: 73 --FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 F D + + + + F+ V Sbjct: 67 ILFGDGYIPGDPSAVIDLLHRCTPRELKLAEDVLKLFLMKSSDDV 111 >gi|70727393|ref|YP_254309.1| hypothetical protein SH2394 [Staphylococcus haemolyticus JCSC1435] gi|68448119|dbj|BAE05703.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 224 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 11/75 (14%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQK-----------YEKGVNRVGASRLQHISE 64 G RI+ R GM+ ++L + L F K +E + A + ++ Sbjct: 4 GSRIKKLRKQKGMTLQQLSDDLHEQFPAKDKRNSFTKGKLSNWENDKSEPIAKTVSQLAT 63 Query: 65 VLESPISFFFDVSPT 79 + + + Sbjct: 64 YFGVSMDYLIGLEDD 78 >gi|27733909|ref|NP_775700.1| putative regulatory protein [Leuconostoc citreum] gi|27552373|emb|CAD38159.1| putative regulatory protein [Leuconostoc citreum] Length = 68 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 24/66 (36%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + RIR R +SQEK +G+ E G + LQ I L + Sbjct: 2 ILNFIAHRIRQLRQQQNVSQEKFAYNIGMDRSYFASVESGKRNISIINLQKIVTGLGVTL 61 Query: 71 SFFFDV 76 FF Sbjct: 62 EEFFKG 67 >gi|89076037|ref|ZP_01162400.1| putative transcriptional regulator, [Photobacterium sp. SKA34] gi|89048272|gb|EAR53853.1| putative transcriptional regulator, [Photobacterium sp. SKA34] Length = 208 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 33/79 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R+ LG++ E+ + G+ + K E +Q ++ L I F Sbjct: 29 LGERLKEIRVSLGLTLEEASKRTGLARSTLSKIENEQISPTYQAMQKLATGLAIDIPQLF 88 Query: 75 DVSPTVCSDISSEENNVMD 93 + ++ + + + Sbjct: 89 EPPKSITASGRRDITRYGE 107 >gi|145218938|ref|YP_001129647.1| XRE family transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145205102|gb|ABP36145.1| transcriptional regulator, XRE family [Chlorobium phaeovibrioides DSM 265] Length = 210 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 57/134 (42%), Gaps = 7/134 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G RI+ R G+SQE+L + + V K E G + L+ +E L +PIS Sbjct: 3 NEQIGLRIKELRSQNGLSQEELARRVELPRTAVTKIESGSQELRFRELEKFAEALGTPIS 62 Query: 72 FFFDVSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + + + MD F+ T + + + + ++R ++ +++ + Sbjct: 63 ALVEKPHESPASVMCMSSTFMDNSFMMTSESSEEYKA----SNTRLRTMLLFILQRTAGN 118 Query: 130 -EKKYRTIEEECMV 142 E R I + + Sbjct: 119 PEMDDRRIADTILT 132 >gi|310830110|ref|YP_003962467.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308741844|gb|ADO39504.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 110 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 32/67 (47%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+ IR R+ ++Q +L E + IT + E+G + L ISE LE P+S Sbjct: 3 NKVIGRHIREARLDKKLTQYQLAERVHITPNYLSMLERGTHLPKLETLITISEALEVPVS 62 Query: 72 FFFDVSP 78 P Sbjct: 63 ALLTDFP 69 >gi|239815433|ref|YP_002944343.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239802010|gb|ACS19077.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 139 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 47/123 (38%), Gaps = 18/123 (14%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R GM+Q+++ E G+ V +E G A RL+ ++++ + Sbjct: 2 RLASARDGKGMTQDQVAERFGVNKATVSAWETGRGVPDALRLRALAKLYDVSADSLL--- 58 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 + +PD ++ F + + + ++++ + + + +E Sbjct: 59 --------------WEDSLSPDAMKFAAAFDGL-NEQQKRQLFAMWEAYIREGASDAEVE 103 Query: 138 EEC 140 ++ Sbjct: 104 KKM 106 >gi|229085629|ref|ZP_04217861.1| transcriptional regulator/TPR domain protein [Bacillus cereus Rock3-44] gi|228697709|gb|EEL50462.1| transcriptional regulator/TPR domain protein [Bacillus cereus Rock3-44] Length = 422 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 1/73 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR R+ GM+Q +L + + + + E G + +S L+ +S+ L F Sbjct: 1 MQIGERIRQIRIHKGMTQGELVSGI-CSVAYLSRIENGQIKPSSSFLKKVSQKLNVDWDF 59 Query: 73 FFDVSPTVCSDIS 85 D Sbjct: 60 LIDGKNEGIESNI 72 >gi|225855406|ref|YP_002736918.1| cI repressor [Streptococcus pneumoniae JJA] gi|225724232|gb|ACO20085.1| cI repressor [Streptococcus pneumoniae JJA] Length = 250 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 6/128 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R ++Q+KL E G + +E G ++ ++ ++ LE + F Sbjct: 4 LGSSIKEVRKSKKLTQKKLAELTGFKQNTISNHENGNRQLDEKDIRIYAQALEVSPQYLF 63 Query: 75 DVSPTVCSDISSEENN----VMDFISTPDGLQLNRYFIQIDDVKVRQ--KIIELVRSIVS 128 D++ +I + + G LN Q+ + + + KI E+ +I+ Sbjct: 64 DLAKPSSIEIIPTTSPIQTIYDELEPPRQGKVLNYAKRQLKEQRNEEETKINEVSENIIR 123 Query: 129 SEKKYRTI 136 + +T Sbjct: 124 LDDYRQTT 131 >gi|261366533|ref|ZP_05979416.1| transcriptional regulator, Cro/CI family [Subdoligranulum variabile DSM 15176] gi|282571346|gb|EFB76881.1| transcriptional regulator, Cro/CI family [Subdoligranulum variabile DSM 15176] Length = 124 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 16/126 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R + ++Q++L + ++ + VQ E+G L+ +VL + Sbjct: 5 KELGRRIQKARKVKKLTQQELADLSHVSLKHVQSCERGEKNPSFEVLRAFGKVLNLSLDS 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 ++ +++ R R+ ++ R++ K+ Sbjct: 65 LMNLDLPEDEQSAND----------------MRQLYLSCPPAARKALLNSARALADELKE 108 Query: 133 YRTIEE 138 +E Sbjct: 109 MTQADE 114 >gi|146339002|ref|YP_001204050.1| XRE family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146191808|emb|CAL75813.1| putative transcriptional regulator, XRE family [Bradyrhizobium sp. ORS278] Length = 481 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 1/117 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R LG+SQ +L E LGI+ V E+ V A L ++EV + + Sbjct: 9 LFVGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVSAQILLRLAEVYDLDLRD 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 +E + F Q R ++ V + L + + Sbjct: 69 LATADEDRFFAELNEIFSDPLFRQIELPKQELRDLAELC-PGVTHALQRLYAAYAEA 124 >gi|254932545|ref|ZP_05265904.1| LcmR protein [Listeria monocytogenes HPB2262] gi|12275199|emb|CAC22274.1| LcmR protein [Listeria monocytogenes] gi|293584102|gb|EFF96134.1| LcmR protein [Listeria monocytogenes HPB2262] gi|332310736|gb|EGJ23831.1| Transcriptional repressor [Listeria monocytogenes str. Scott A] Length = 68 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 + IR R ++Q+++ + L ++ +YE G A+ L I++ + + + D Sbjct: 4 RNIRSIREDNDITQQQMAKLLNVSQNTYSQYETGKIEWTATTLIKIADYFDVSVDYLLD 62 >gi|329116441|ref|ZP_08245158.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906846|gb|EGE53760.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 176 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 5/105 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++QE L +G T + +E + + + + + +++ + + Sbjct: 2 NRLKELRKEKGLTQESLAHGIGTTKLTISNWENEKHVIKSDKAKQLADYFNVSVPYLLGF 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 S D E+ + ++ T DG ++ + + + R KIIE Sbjct: 62 S-----DFKDEQKSALEVYKTKDGFEVVKSRVAELIGEKRLKIIE 101 >gi|323490759|ref|ZP_08095961.1| DNA-binding protein [Planococcus donghaensis MPA1U2] gi|323395641|gb|EGA88485.1| DNA-binding protein [Planococcus donghaensis MPA1U2] Length = 172 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 3/90 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN +G ++ R ++ ++L E ++ + + E+G + V L+ I++ L Sbjct: 1 MPNGT---IGVTLKSLRKERKLTLKELAEQTNVSISFLSQVERGKSSVTLESLRKIADAL 57 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFIS 96 S FF S E +S Sbjct: 58 NVDPSLFFANETEKTDWESRLEKFHYKDLS 87 >gi|310657705|ref|YP_003935426.1| DNA-binding protein [Clostridium sticklandii DSM 519] gi|308824483|emb|CBH20521.1| DNA-binding protein [Clostridium sticklandii] Length = 183 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 51/132 (38%), Gaps = 9/132 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + +I+ R G + + L + ++ + + E G + + + L+ + + P+ Sbjct: 3 ILSEIADKIKELRKEKGYTLKDLADKTELSVSFLSQVENGSSSLAITSLKKLVDAFSVPM 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 ++FF T + +E P F+++ + + ++ +I + Sbjct: 63 TYFFYSMETHNYHVKIDEQKSFKMEGLPS------EFVRLSGDFSGRSLESMIVTIPGGQ 116 Query: 131 K---KYRTIEEE 139 K KY EE Sbjct: 117 KHGHKYNHPGEE 128 >gi|282856547|ref|ZP_06265821.1| transcriptional regulator, XRE family [Pyramidobacter piscolens W5455] gi|282585613|gb|EFB90907.1| transcriptional regulator, XRE family [Pyramidobacter piscolens W5455] Length = 127 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 29/82 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RIR R L M+Q++L + ++ +Q E L +++ L S Sbjct: 1 MTLGLRIRTLRKALKMTQQQLADATEVSRIYIQALESNRRSPSMKLLHRLADKLGVETSD 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + P E Sbjct: 61 LLEEFPRDNGGRLQLEELFAGP 82 >gi|160915490|ref|ZP_02077701.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991] gi|158432610|gb|EDP10899.1| hypothetical protein EUBDOL_01498 [Eubacterium dolichum DSM 3991] Length = 110 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G+SQ LG+ LG+ Q + +E G + + + E L+ P+ +F + Sbjct: 15 EKLKAVRKQKGLSQAALGKLLGVQTQTISNWENGKSEPNLKTINKLCEALDVPLRYFINE 74 Query: 77 SPTVCSDISSEE 88 E Sbjct: 75 ERVDYQLTLEEA 86 >gi|108756842|ref|YP_628510.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108460722|gb|ABF85907.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 122 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 2/109 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+ R L ++Q + E + + + + E+G L + L Sbjct: 9 IGAAARVARTRLELTQADVAERIDVATEVYGRLERGGMLPSVHTLLKLCHELHVSADELL 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +S + + P+ +L R ++ KV K++ LV Sbjct: 69 GLSANAVNGGARPGEPPTSPQERPEVRRLLRTVRPLEPAKV--KLLGLV 115 >gi|92113491|ref|YP_573419.1| putative phage repressor [Chromohalobacter salexigens DSM 3043] gi|91796581|gb|ABE58720.1| putative phage repressor [Chromohalobacter salexigens DSM 3043] Length = 227 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 1/71 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R LG+SQ G+ YEKG L + + + + Sbjct: 12 VGERIKGERKRLGLSQTAFANLAGVGKTTQINYEKGTRNPDTEYLAAL-DSAGVDVYYVL 70 Query: 75 DVSPTVCSDIS 85 + Sbjct: 71 TGRKSSGGSSD 81 >gi|321157314|emb|CBW39296.1| Helix-turn-helix DNA binding protein [Streptococcus pneumoniae] Length = 228 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 41/72 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L M+Q+ + + LGIT+Q +E+G+ + +++ + ++L P +F +V Sbjct: 5 EKLKARRKELKMTQKDIADQLGITYQAYSTWERGIKQPSREKIKLLEQILNVPKGYFTEV 64 Query: 77 SPTVCSDISSEE 88 + S+E Sbjct: 65 EIVRLYNTLSDE 76 >gi|325110272|ref|YP_004271340.1| hypothetical protein Plabr_3728 [Planctomyces brasiliensis DSM 5305] gi|325110633|ref|YP_004271701.1| hypothetical protein Plabr_4102 [Planctomyces brasiliensis DSM 5305] gi|324970540|gb|ADY61318.1| helix-turn-helix domain protein [Planctomyces brasiliensis DSM 5305] gi|324970901|gb|ADY61679.1| helix-turn-helix domain protein [Planctomyces brasiliensis DSM 5305] Length = 73 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + G+R+R R G SQE + + E+G V ++ I+ L Sbjct: 6 DILVRFGQRVRALRREQGYSQESFAYACELDRTYMGGIERGERNVALRNIERIASTLGIS 65 Query: 70 ISFFFDV 76 +S D Sbjct: 66 LSELMDG 72 >gi|284036657|ref|YP_003386587.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283815950|gb|ADB37788.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 402 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V IR R + G++QE+ + I + YE+G +Q I++ + + Sbjct: 4 VSDNIRYLRKLNGLTQEQFSRKINIKRSLLGAYEEGRANPNGQNIQAIAKAFNTTVELL 62 >gi|227507935|ref|ZP_03937984.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192599|gb|EEI72666.1| transcription regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 212 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 29/60 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +++ ++I+ R ++Q+ L + L ++ + + +E G + +S++ + Sbjct: 4 VPMSISEKIKQCRKQKNLTQKDLADELHLSRKTISGWENGRGYPDIKSITQLSDIFGISV 63 >gi|239630941|ref|ZP_04673972.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065263|ref|YP_003787286.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|239527224|gb|EEQ66225.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437670|gb|ADK17436.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 373 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 48/116 (41%), Gaps = 15/116 (12%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++INVG I R G++Q+ L + +G++ V K+E G + + L ++ + I Sbjct: 1 MEINVGAVISANRKQKGITQQALADFVGVSKASVSKWETGQSYPDITLLPILAAYFDVSI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +S+ + ++ Q + + + +++ +R++ Sbjct: 61 DKLM---------------AYDAQLSSTEIRRIYTSMKQAFETQTGKAVLKSIRNL 101 >gi|161510949|ref|YP_001569072.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142637|ref|ZP_03567130.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|294850703|ref|ZP_06791424.1| transcriptional regulator [Staphylococcus aureus A9754] gi|302344736|ref|YP_003813121.1| hypothetical protein pSK1_p26 [Staphylococcus aureus] gi|160369758|gb|ABX30728.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|270299795|gb|ACZ68601.1| hypothetical protein SAP064A_010 [Staphylococcus aureus] gi|270300347|gb|ACZ69153.1| hypothetical protein SAP066A_022 [Staphylococcus aureus] gi|270300431|gb|ACZ69237.1| hypothetical protein SAP070B_021 [Staphylococcus aureus] gi|270300546|gb|ACZ69352.1| hypothetical protein SAP062B_011 [Staphylococcus aureus] gi|281334293|gb|ADA61377.1| hypothetical protein SAP015A_013 [Staphylococcus aureus] gi|281334660|gb|ADA61744.1| hypothetical protein SAP045A_012 [Staphylococcus epidermidis] gi|281334719|gb|ADA61803.1| hypothetical protein SAP046A_025 [Staphylococcus aureus] gi|281334822|gb|ADA61906.1| hypothetical protein SAP049A_017 [Staphylococcus aureus] gi|281334879|gb|ADA61963.1| hypothetical protein SAP050A_035 [Staphylococcus aureus] gi|281334891|gb|ADA61975.1| hypothetical protein SAP051A_010 [Staphylococcus aureus] gi|281334948|gb|ADA62032.1| hypothetical protein SAP052A_032 [Staphylococcus aureus] gi|282166272|gb|ADA80289.1| hypothetical protein SAP107B_015 [Staphylococcus epidermidis] gi|282166632|gb|ADA80648.1| hypothetical protein SAP094B_021 [Staphylococcus aureus] gi|282166656|gb|ADA80672.1| hypothetical protein SAP098A_003 [Staphylococcus aureus] gi|282166710|gb|ADA80726.1| hypothetical protein SAP101A_022 [Staphylococcus aureus] gi|282166826|gb|ADA80842.1| hypothetical protein SAP104C_023 [Staphylococcus aureus SK6575] gi|282166894|gb|ADA80910.1| hypothetical protein SAP100B_006 [Staphylococcus aureus] gi|294822453|gb|EFG38901.1| transcriptional regulator [Staphylococcus aureus A9754] gi|300492210|gb|ADK23691.1| hypothetical protein [Staphylococcus aureus] gi|302751843|gb|ADL66020.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304380376|gb|ADM28820.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304381944|gb|ADM28861.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304381983|gb|ADM28899.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304382081|gb|ADM28943.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304384184|gb|ADM28984.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304384532|gb|ADM29026.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304386475|gb|ADM29070.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|304389248|gb|ADM29232.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] gi|315195841|gb|EFU26210.1| possible transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] Length = 61 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RIR R G+SQE L + L ++ Q + E + ++ + ++ + F Sbjct: 3 NRIREYRKQKGISQETLSKELKVSRQTINAIENNKYDPTLTLAFKLARLFDTTVDELFS 61 >gi|110680047|ref|YP_683054.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] gi|109456163|gb|ABG32368.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] Length = 429 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 46/136 (33%), Gaps = 10/136 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR RR + G+ Q L LGI+ + E R+G L I+ VL S + Sbjct: 8 GSRIRERRSVAGLKQADLARALGISPSYLNLIEHNRRRIGGKLLLDIARVLGVEPSMLTE 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL--QLNRYFIQIDD--VKVRQKIIEL---VRSIVS 128 + E + + +L F + ++I L V ++ Sbjct: 68 GAEAALIATLREAAKAANLTAAEVARADELTGRFPGWAEILASGHRRITTLERTVEALSD 127 Query: 129 S---EKKYRTIEEECM 141 + K E + Sbjct: 128 RLTHDPKLAASVHELL 143 >gi|54298268|ref|YP_124637.1| hypothetical protein lpp2326 [Legionella pneumophila str. Paris] gi|53752053|emb|CAH13479.1| hypothetical protein lpp2326 [Legionella pneumophila str. Paris] Length = 87 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK+IR R G SQE + + E+G + L I + L+ + Sbjct: 8 IVLGKQIRKIRKEKGFSQEGFANFIEMNRGYYGTVERGEANITILNLLKILKGLDVTPNE 67 Query: 73 FF 74 F Sbjct: 68 LF 69 >gi|325849104|ref|ZP_08170596.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480349|gb|EGC83412.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 202 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R++ R G +Q L + L +T + YE+ L+ +++ + + + Sbjct: 1 MSVGVRLKQLRKSSGKTQRDLAKLLYVTASSIGMYERDERTPSPDVLKKYADIFDVSLDY 60 Query: 73 FF 74 Sbjct: 61 IL 62 >gi|322388685|ref|ZP_08062284.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140474|gb|EFX35980.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 113 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 33/72 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++Q +L + LGI +E+G + L I+++L+ I + Sbjct: 5 ERLKELRKQAHLTQVELAKRLGIGQSSYADWERGKKKPTQENLVKIAQILDVSIDYLVGN 64 Query: 77 SPTVCSDISSEE 88 S ++ + E Sbjct: 65 SEEKSDELDNIE 76 >gi|319764265|ref|YP_004128202.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] gi|317118826|gb|ADV01315.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] Length = 118 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 41/98 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G I+ +R G SQ+ + E LGIT + +YE+G + +L I+E + + Sbjct: 9 KMIGASIKRKREESGYSQKLVAEHLGITEKTCSEYERGKTQPPLLKLIAIAEFFQCGLDE 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 D + +++ + D + + +I Sbjct: 69 LLVGISPAPDDQAKHIASLLHGLKRADRHHIVKIVEKI 106 >gi|310830237|ref|YP_003965337.1| XRE family transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308753143|gb|ADO44286.1| XRE family transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 210 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 19/142 (13%), Positives = 44/142 (30%), Gaps = 12/142 (8%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +K + + R+R R G++ L G+ + K E + ++E Sbjct: 18 RKAAHSIA----ARLRALRKEAGLTLSDLAMRSGLAASTLSKIENEQMSPTYDTILSLAE 73 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL-- 122 L I+ + + + I + + + ++ + L Sbjct: 74 GLGVDITHLVTGTQGKSVNGRKAVTRKGEGIVHRTQQY---DYEMLCNDIANRQFVPLLA 130 Query: 123 ---VRSIVSSEKKYRTIEEECM 141 RS+ + + R EE + Sbjct: 131 EVKARSLHTFDGLLRHPGEEFI 152 >gi|302672043|ref|YP_003832003.1| AbrB family transcriptional regulator [Butyrivibrio proteoclasticus B316] gi|302396516|gb|ADL35421.1| transcriptional regulator AbrB family [Butyrivibrio proteoclasticus B316] Length = 139 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + R +L M+QE + E LG+T Q V K+E G + + + ++++ + + Sbjct: 5 NLVQMRKVLRMTQEDVAEKLGVTRQSVAKWESGESIPDLDKCKQLADIFGVSLDDLANYE 64 Query: 78 PTV 80 P Sbjct: 65 PEE 67 >gi|295101241|emb|CBK98786.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 74 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R ++Q ++ + + YEKG R+ L +++ + +++ V Sbjct: 5 ERIKALRSDHDLNQTQVARAIHVAQTTYSDYEKGKVRIPVECLIQLAKFYDVDMNYITGV 64 Query: 77 SPT 79 S T Sbjct: 65 SDT 67 >gi|255029672|ref|ZP_05301623.1| DNA-binding protein [Listeria monocytogenes LO28] Length = 68 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R ++Q++L +G T + KYE +R L ++E+L + F Sbjct: 4 LEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDF 63 Query: 73 FFDV 76 D Sbjct: 64 LLDD 67 >gi|302878682|ref|YP_003847246.1| helix-turn-helix domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581471|gb|ADL55482.1| helix-turn-helix domain protein [Gallionella capsiferriformans ES-2] Length = 124 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 1/111 (0%) Query: 1 MVGNKKIP-NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K + + + +G I RR L +Q +L E +G+ + V ++E+G N RL Sbjct: 1 MTSEIKTLGSSLGLILGANIAERRKKLNWTQAELAERIGVDTETVSRFERGSNLPSLHRL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + ++E L+ P+ S D S M ++ D Q+ Sbjct: 61 EKLAEALKIPLYKLVAASSPRHDDQSFILEEWMSELTPKDREFAMNTLKQL 111 >gi|227555817|ref|ZP_03985864.1| transcriptional regulator [Enterococcus faecalis HH22] gi|227174984|gb|EEI55956.1| transcriptional regulator [Enterococcus faecalis HH22] gi|315573616|gb|EFU85807.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315582036|gb|EFU94227.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] Length = 75 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + RIR R +SQEKL L I +YE G + S L ++E + + + Sbjct: 2 IFIYYRIRNLREDADLSQEKLARLLHINQATYSRYETGDLEIPVSSLIKLAEFYSTSVDY 61 Query: 73 FFDVSPTVCS 82 +++ ++ Sbjct: 62 LVNLTDSMEP 71 >gi|254488763|ref|ZP_05101968.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] gi|214045632|gb|EEB86270.1| transcriptional regulator, XRE family [Roseobacter sp. GAI101] Length = 207 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PVD +G R+R R + E+ G+ + K E G L+ ++ LE Sbjct: 24 PVD--LGARVRELRKARSWTLEQAANQAGLARSTLSKIENGQMSPTYDALKKLAVGLEIS 81 Query: 70 ISFFFD 75 + F Sbjct: 82 VPQLFT 87 >gi|158422455|ref|YP_001523747.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158329344|dbj|BAF86829.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 301 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R LGM+Q + LG++ V K+E + + L I+E+ P F Sbjct: 64 RRIREIRKNLGMNQAEFAAALGVSQGSVSKWEAAKEQPRTTALLKIAELAGLPSFSLFSG 123 Query: 77 SP 78 + Sbjct: 124 TD 125 >gi|86739602|ref|YP_480002.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566464|gb|ABD10273.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 81 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 34/68 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R +R LG+SQE+L + G+ + V + E+G + + +++ L+ + Sbjct: 14 GERVRAQRHELGLSQEQLADECGLHWTFVGQVERGRRNISLHNILKLADALKIDPAELVR 73 Query: 76 VSPTVCSD 83 ++ Sbjct: 74 GLQAPSNE 81 >gi|16799151|ref|NP_469419.1| hypothetical protein lin0073 [Listeria innocua Clip11262] gi|16412493|emb|CAC95306.1| lin0073 [Listeria innocua Clip11262] Length = 158 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 2/123 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+ R G SQ KL + LG + QV YE+G L I+E + Sbjct: 4 KRLSELRKKKGFSQYKLADELGFSRGQVANYEQGTREPDYQTLLKIAEFFNVSTDYLLGR 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 +D + + S D ++ Y + ++ I++ + Sbjct: 64 DDNNLADTIAAHIDSN--ASEEDMKEILAYIEEKRKEHANEEEIDITDIAAKKDADVAKF 121 Query: 137 EEE 139 EE Sbjct: 122 VEE 124 >gi|295692649|ref|YP_003601259.1| transcriptional regulator [Lactobacillus crispatus ST1] gi|295030755|emb|CBL50234.1| Transcriptional regulator [Lactobacillus crispatus ST1] Length = 269 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 55/138 (39%), Gaps = 7/138 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R++LG+SQ + + +T K E+ + + +L I ++ Sbjct: 1 MTIGQQLKKFRLLLGLSQADMAAGI-VTASFYSKVERDQSEIIIDKLVEILNAHNISLNE 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV------KVRQKIIELVRSI 126 FF+ + E V + D +L ++ D K++ I +L + Sbjct: 60 FFEAFDKENLPNLNLEKKVYSYFDNRDLGKLIALKKEVKDRDALIYLKLKLIIADLEGRV 119 Query: 127 VSSEKKYRTIEEECMVEQ 144 + + + +E+ Sbjct: 120 HEMPQNSQEELRKICLEE 137 >gi|260583479|ref|ZP_05851227.1| repressor protein [Granulicatella elegans ATCC 700633] gi|260158105|gb|EEW93173.1| repressor protein [Granulicatella elegans ATCC 700633] Length = 227 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 23/57 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G SQ + + L I+ +E G L ++++ S+F Sbjct: 5 NRLKEIRTQQGYSQSFIAKQLEISRVAYHHWENGKTIPNQKNLIALADIFNVEASYF 61 >gi|228472110|ref|ZP_04056876.1| helix-turn-helix domain protein [Capnocytophaga gingivalis ATCC 33624] gi|228276313|gb|EEK15037.1| helix-turn-helix domain protein [Capnocytophaga gingivalis ATCC 33624] Length = 125 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 47/124 (37%), Gaps = 1/124 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG++I+ R +SQE++ E + ++ + E G + A + + ++ Sbjct: 1 MNEIVGEKIKNLRKSKNLSQEEVAEYIHLSQSTYARMESGASNSWAGYILPLCDLFGIQP 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 V ++ ++ ++ +L + + K I L + I + Sbjct: 61 EELLKADHIVINNNNTSCQYSGGYVINQLSDKLIEQYEKRLLEKD-NLIAYLQKEIQQLK 119 Query: 131 KKYR 134 + R Sbjct: 120 TENR 123 >gi|225568403|ref|ZP_03777428.1| hypothetical protein CLOHYLEM_04480 [Clostridium hylemonae DSM 15053] gi|225162631|gb|EEG75250.1| hypothetical protein CLOHYLEM_04480 [Clostridium hylemonae DSM 15053] Length = 117 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 37/103 (35%), Gaps = 3/103 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R+ M+Q+ + L + + YE + +L ++ + + + + Sbjct: 5 KRLKALRLKNEMTQDYVARRLNVARSTIAGYETKNRQPSHEKLTALASLFHVSVDYLLEG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 T+ S ++ + L+ R V + I Sbjct: 65 EETISITPSQSVPE---PVTERNFLEKYRGLSAESKRDVLKYI 104 >gi|167820072|ref|ZP_02451752.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 91] Length = 113 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 24/69 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R SQE+L E G+ V + E+G + ++ PI+ Sbjct: 28 GAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLLS 87 Query: 76 VSPTVCSDI 84 + Sbjct: 88 PAGDAGPPP 96 >gi|167622932|ref|YP_001673226.1| XRE family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352954|gb|ABZ75567.1| transcriptional regulator, XRE family [Shewanella halifaxensis HAW-EB4] Length = 182 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ ++ R G+SQ +L + G+T + EK S L+ + L + Sbjct: 1 MDIGENLKKVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVE 60 Query: 73 FFDVSPTVCSD 83 FF + T ++ Sbjct: 61 FFSIEDTQETE 71 >gi|254933343|ref|ZP_05266702.1| transcriptional regulator [Listeria monocytogenes HPB2262] gi|293584903|gb|EFF96935.1| transcriptional regulator [Listeria monocytogenes HPB2262] Length = 158 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 45/125 (36%), Gaps = 4/125 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R ++Q + + LG+ YE+ A I++ + + + Sbjct: 3 GDILMKLRKSKNLTQSDIAKILGVARTTYSSYEQNRRMPDAEIQIKIADYFDVSLDYL-- 60 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVRSIVSSEKKYR 134 ++I+ +D ++ + ++ +I+ V + I + + +++ Sbjct: 61 -HGRGKNNIADTIAAHIDSNASEEDIKEILAYIEEKRKEHVNEGEINITEAASKGDEEVN 119 Query: 135 TIEEE 139 +E Sbjct: 120 KFVDE 124 >gi|152985210|ref|YP_001351391.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960368|gb|ABR82393.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 182 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGARLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLVE 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF D+ + + + + ++D S ++L Sbjct: 61 FFSLDLEQDSHTQVVYKADELIDISSGAVSMRLV 94 >gi|71737818|ref|YP_272531.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558371|gb|AAZ37582.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|330873076|gb|EGH07225.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330986843|gb|EGH84946.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009416|gb|EGH89472.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 182 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVE 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FF P + + + + ++D ++L Sbjct: 61 FFSEETVPENAAQVVYKASELIDISDGAVTMKLV 94 >gi|254301853|ref|ZP_04969296.1| DNA-binding protein [Burkholderia pseudomallei 406e] gi|157811641|gb|EDO88811.1| DNA-binding protein [Burkholderia pseudomallei 406e] Length = 88 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 24/69 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R SQE+L E G+ V + E+G + ++ PI+ Sbjct: 9 GAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLLS 68 Query: 76 VSPTVCSDI 84 + Sbjct: 69 PAGDAGPPP 77 >gi|53716572|ref|YP_105616.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|53722368|ref|YP_111353.1| DNA-binding protein [Burkholderia pseudomallei K96243] gi|67642241|ref|ZP_00441000.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|76818883|ref|YP_335523.1| transcriptional regulator [Burkholderia pseudomallei 1710b] gi|121597603|ref|YP_990060.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124381912|ref|YP_001024022.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126445750|ref|YP_001078595.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|126456449|ref|YP_001075854.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|166999565|ref|ZP_02265402.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167742899|ref|ZP_02415673.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 14] gi|167828452|ref|ZP_02459923.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 9] gi|167849906|ref|ZP_02475414.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei B7210] gi|167898508|ref|ZP_02485909.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 7894] gi|167906857|ref|ZP_02494062.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei NCTC 13177] gi|167915218|ref|ZP_02502309.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei 112] gi|167923046|ref|ZP_02510137.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei BCC215] gi|217418478|ref|ZP_03449985.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|226198499|ref|ZP_03794066.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|242312902|ref|ZP_04811919.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|254173994|ref|ZP_04880657.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254183723|ref|ZP_04890315.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254191201|ref|ZP_04897706.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254193556|ref|ZP_04899990.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|254200408|ref|ZP_04906773.1| DNA-binding protein [Burkholderia mallei FMH] gi|254204434|ref|ZP_04910787.1| DNA-binding protein [Burkholderia mallei JHU] gi|254265606|ref|ZP_04956471.1| DNA-binding protein [Burkholderia pseudomallei 1710a] gi|254356660|ref|ZP_04972935.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|52212782|emb|CAH38814.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|52422542|gb|AAU46112.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|76583356|gb|ABA52830.1| possible transcriptional regulator, XRE family, CUPIN domain [Burkholderia pseudomallei 1710b] gi|121225401|gb|ABM48932.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124289932|gb|ABM99201.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126230217|gb|ABN93630.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|126238604|gb|ABO01716.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|147748020|gb|EDK55095.1| DNA-binding protein [Burkholderia mallei FMH] gi|147754020|gb|EDK61084.1| DNA-binding protein [Burkholderia mallei JHU] gi|148025687|gb|EDK83810.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|157938874|gb|EDO94544.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|160695041|gb|EDP85011.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|169650309|gb|EDS83002.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|184214256|gb|EDU11299.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|217397782|gb|EEC37797.1| DNA-binding protein [Burkholderia pseudomallei 576] gi|225929422|gb|EEH25442.1| DNA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|238523345|gb|EEP86784.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|242136141|gb|EES22544.1| DNA-binding protein [Burkholderia pseudomallei 1106b] gi|243064397|gb|EES46583.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|254216608|gb|EET05993.1| DNA-binding protein [Burkholderia pseudomallei 1710a] Length = 94 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 24/69 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R SQE+L E G+ V + E+G + ++ PI+ Sbjct: 9 GAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLLS 68 Query: 76 VSPTVCSDI 84 + Sbjct: 69 PAGDAGPPP 77 >gi|332292122|ref|YP_004430731.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] gi|332170208|gb|AEE19463.1| helix-turn-helix domain protein [Krokinobacter diaphorus 4H-3-7-5] Length = 115 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 32/84 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R +SQE+L + ++ V E G ++ + I+ VLE I+ Sbjct: 10 YLGGNIKNLRKSRKLSQEELASFISLSRSSVANIESGYHQPSIHVIYQIAVVLECKITEL 69 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 + + + + + Sbjct: 70 LPSIDSYKKSKVEIDEKFSEILDS 93 >gi|325663237|ref|ZP_08151687.1| hypothetical protein HMPREF0490_02428 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470691|gb|EGC73921.1| hypothetical protein HMPREF0490_02428 [Lachnospiraceae bacterium 4_1_37FAA] Length = 120 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 41/105 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI++ R+ G++QE + + + IT + E G +V L I+ L + Sbjct: 6 KAIGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALSVSVDT 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + +E + ++ ++ + R+ Sbjct: 66 LLCDNVIASKIVFEKEAKDIFSDCDEFEVRFLVDLMKSAKIAFRK 110 >gi|294794988|ref|ZP_06760123.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] gi|294454350|gb|EFG22724.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] Length = 142 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + RIR RR+ LG+SQE L + + + K E G + ++++ +EVL + Sbjct: 19 MNKTIYDRIRERRIQLGLSQEDLAIKMGYKSRSTINKIESGAVDIARNKIEKFAEVLNTT 78 Query: 70 ISFFFDVSPTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 ++ D + T I E + + L++ + ++ ++ + Sbjct: 79 PAYLMDWNDTPKEYYIDPEVSKYAQAVKDNPNLRILFDASKDMSKDDIDFVVNMIEGLKK 138 Query: 129 SE 130 E Sbjct: 139 RE 140 >gi|257868168|ref|ZP_05647821.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257874559|ref|ZP_05654212.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257802282|gb|EEV31154.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257808723|gb|EEV37545.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 72 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 29/61 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R ++QE+L + L I+ +YE G + L +++ + + + +++ Sbjct: 4 RIRDLREDKDLNQEQLSKLLNISQTTYSRYESGKIDIPTQSLIKLADFYSTSVDYLLNLT 63 Query: 78 P 78 Sbjct: 64 D 64 >gi|226329569|ref|ZP_03805087.1| hypothetical protein PROPEN_03478 [Proteus penneri ATCC 35198] gi|225202755|gb|EEG85109.1| hypothetical protein PROPEN_03478 [Proteus penneri ATCC 35198] Length = 161 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 36/94 (38%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N + P + +G +++ R +S +L GI+ + K E G + L+ I+ Sbjct: 2 NSQPPKKTNEYLGNKVKQLRQSRNLSLNELSRKSGISKAALSKLESGDSNPRIDTLEAIA 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 L P+ F + + + V D+ Sbjct: 62 IALGFPLGDLFSFTREEYPRLERHKPIVGDYAQE 95 >gi|160940816|ref|ZP_02088158.1| hypothetical protein CLOBOL_05710 [Clostridium bolteae ATCC BAA-613] gi|158436336|gb|EDP14103.1| hypothetical protein CLOBOL_05710 [Clostridium bolteae ATCC BAA-613] Length = 131 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 8/113 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R G+SQE+ G+ LG+T V K E G ++ + L+ I + Sbjct: 6 ERLRELRKKCGLSQEEFGKKLGVTKTAVSKMELGTYQITDTMLKLICSEFNVNEKWLRSG 65 Query: 77 SPTVCSDISSEENNVMDFIS-------TPDGLQLNRYFIQIDDVKVRQKIIEL 122 + N + + P + ++ R+ ++E Sbjct: 66 EGGEGDMFIKPQKNDLIARAAQLLGEKDPVFEAFVATYSKL-SPSNRKVLLEF 117 >gi|157960771|ref|YP_001500805.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845771|gb|ABV86270.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] Length = 182 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 32/71 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ ++ R G+SQ +L + G+T + EK S L+ + L + Sbjct: 1 MDIGENLKRVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVD 60 Query: 73 FFDVSPTVCSD 83 FF + + + Sbjct: 61 FFSIEDSTLVE 71 >gi|125622888|ref|YP_001031371.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|2909717|gb|AAC12967.1| unknown [Lactococcus lactis subsp. cremoris MG1363] gi|124491696|emb|CAL96615.1| Putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|300069626|gb|ADJ59026.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 185 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 30/68 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ ++ R+ ++QE++ + L + Q + ++E L ++++ +S + F Sbjct: 1 MLGENLQKARLSKNLTQEEVAKELYFSRQAISRWESNKTEPNFETLIALADLYDSDLLAF 60 Query: 74 FDVSPTVC 81 Sbjct: 61 SQGIEPQK 68 >gi|54302999|ref|YP_132992.1| HTH_3family transcriptional regulator [Photobacterium profundum SS9] gi|46916427|emb|CAG23192.1| putative transcriptional regulator, HTH_3family [Photobacterium profundum SS9] Length = 208 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR++ RM G++ E+ + G+ + K E +Q ++ L I F Sbjct: 29 LGKRLKEIRMAHGLTLEEASKRTGLARSTLSKIENEQISPTFQAMQKLANGLSVDIPQLF 88 >gi|39935673|ref|NP_947949.1| transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39649526|emb|CAE28048.1| possible transcriptional regulator, XRE family, CUPIN domain [Rhodopseudomonas palustris CGA009] Length = 207 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 12/136 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R+ G S E+L + G++ + + E G + L ++ L P + Sbjct: 26 VGHNLRRLRVRQGYSLERLAKQSGVSRAMLGQIETGKSVPTIGTLWKVATALGVPFARLI 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR-SIVSSEKKY 133 + + +++ G +R ++ +E + ++ Sbjct: 86 ATESPHHPQVLRRTDAK--LLTSNQGQFTSRALF----PFDGERQVEFYELRLAPLHRED 139 Query: 134 RTIE-----EECMVEQ 144 E +V + Sbjct: 140 ADPHAAGTRENLVVAK 155 >gi|325689902|gb|EGD31906.1| XRE family transcriptional regulator [Streptococcus sanguinis SK115] gi|325696861|gb|EGD38749.1| XRE family transcriptional regulator [Streptococcus sanguinis SK160] gi|327459814|gb|EGF06154.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1057] Length = 94 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 28/60 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+++ R G SQ ++ E LG T Q + +E + + L +++ + + Sbjct: 1 MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSVSLIRLADFYQISLDEL 60 >gi|319939025|ref|ZP_08013389.1| DNA-binding protein [Streptococcus anginosus 1_2_62CV] gi|319812075|gb|EFW08341.1| DNA-binding protein [Streptococcus anginosus 1_2_62CV] Length = 115 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRIRL R+ GM+QE+L E + V K E V + L+ + + LE I F Sbjct: 15 YIGKRIRLLRLERGMTQEQLEERADLGTNYVYKLEHLAPNVKINTLERVMQALEVDIETF 74 Query: 74 FDVSPTVCSDIS 85 FD+ P + Sbjct: 75 FDMVPDKEKEDD 86 >gi|315640497|ref|ZP_07895605.1| DNA-binding protein [Enterococcus italicus DSM 15952] gi|315483701|gb|EFU74189.1| DNA-binding protein [Enterococcus italicus DSM 15952] Length = 194 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R + G SQE L E + +T Q + K+E L +S + + + Sbjct: 5 KQLKKYRELNGYSQEILAEKIYVTRQTISKWENDKTYPDIHNLIALSVLFDITLDELVKG 64 Query: 77 SPTVCSDISSEENNVMD 93 + + E+ + Sbjct: 65 DVATMKKMVNSEHMDKN 81 >gi|229060141|ref|ZP_04197511.1| Transcriptional regulator, XRE [Bacillus cereus AH603] gi|228719181|gb|EEL70791.1| Transcriptional regulator, XRE [Bacillus cereus AH603] Length = 107 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 4/98 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R + QE + + LGI YE+G + L ++ E I + Sbjct: 3 GTRLHTLRKERKLRQEDMAKQLGIARTTYAMYEQGNREPDYNTLIKLATFFEVSIDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDF----ISTPDGLQLNRYFIQ 109 + + F +TP + + F + Sbjct: 63 TTKIRQVTDIQDPALYQWFKDISNATPQKREELKKFWE 100 >gi|220914053|ref|YP_002489362.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219860931|gb|ACL41273.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 201 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 36/87 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG ++R R GM+ +L E G++ V + E+G+ + L ++ L+ P+ FF Sbjct: 20 VGNKVRSMRKDRGMTLARLSEITGLSQAIVSQIERGMANPSFTTLAQLAHGLDIPVGRFF 79 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 S + T + + Sbjct: 80 IGQDQSRSPVVRRSARRNLQNVTRESV 106 >gi|148265511|ref|YP_001232217.1| XRE family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146399011|gb|ABQ27644.1| transcriptional regulator, XRE family [Geobacter uraniireducens Rf4] Length = 187 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D N+G +I+ R + ++ + + G + + + E + L I+ I Sbjct: 3 DYNIGAKIKELRRAIKLTLQDVANETGFSTALLSQIENNNISPPIATLDKIAHFFGVRIG 62 Query: 72 FFFDVSPTVCS 82 FF S C Sbjct: 63 HFFIESEEECP 73 >gi|329915926|ref|ZP_08276315.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480] gi|327544831|gb|EGF30214.1| Transcriptional regulator [Oxalobacteraceae bacterium IMCC9480] Length = 355 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+ R G+S ++G +G+T V+KYE ++ L ++ L +F Sbjct: 1 MIGRRLSRARKAAGLSLREVGAQIGLTHASVKKYEDEQATPTSATLIKLARALNVRTEYF 60 Query: 74 F 74 F Sbjct: 61 F 61 >gi|291545509|emb|CBL18617.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 110 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 3/99 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G RI+ R +QE++ + +G++ Q+ + E GVN V L ++EVL + Sbjct: 1 MNEMLGSRIKALRSAKNFTQEQVADQIGVSRQKYARIESGVNSVTLDILSKVAEVLGVTV 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 V E + S+ + F Sbjct: 61 GDITRVLDESP---VVEYRAGEEGASSKKIFDMLDLFYA 96 >gi|283768986|ref|ZP_06341892.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104343|gb|EFC05720.1| DNA-binding protein [Bulleidia extructa W1219] Length = 180 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 36/101 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+G RI+ R+ ++ E+L +T + + E+ L ++E L +S Sbjct: 2 INIGARIKQLRLKNDLTLEELASRTELTKGFLSQLERNRTSPSIQSLADVAEALGVNLSG 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 FF E+ V + + + + Sbjct: 62 FFQEDVEEQIVFQEEDAFVDEQEGMKIFWIVPNAQKNVMEP 102 >gi|251780947|ref|ZP_04823867.1| hypothetical protein CLO_1099 [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243085262|gb|EES51152.1| hypothetical protein CLO_1099 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 140 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 7/59 (11%), Positives = 24/59 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++IR R + + + + + + + +E + ++ I + + +F Sbjct: 18 IGEKIRKVRKMNDLECSEFCKIIKCMKKTLWLWEFDRILPHPNSIKKICDNFNVELEYF 76 >gi|222081886|ref|YP_002541251.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726565|gb|ACM29654.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 227 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 34/76 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 34 NNLEMAIGHEVRAYRKKLGITVTDLAASTGISLGMLSKIENGNISPSLTTLQSLSRALGV 93 Query: 69 PISFFFDVSPTVCSDI 84 P++ FF + + Sbjct: 94 PLTAFFRRYEEPRNAV 109 >gi|218259484|ref|ZP_03475207.1| hypothetical protein PRABACTJOHN_00865 [Parabacteroides johnsonii DSM 18315] gi|218225077|gb|EEC97727.1| hypothetical protein PRABACTJOHN_00865 [Parabacteroides johnsonii DSM 18315] Length = 196 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 11/134 (8%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +GN KI +G +I+ R +S +++ E G++ +Q+++ E ++ + L Sbjct: 3 MGNNKI-------IGAKIKSIRESKQLSTQEVSERSGLSIEQIERIEGNIDFPSLAPLIK 55 Query: 62 ISEVLESPISFFFDVSPTVCSDI----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 I+ VL + F D + I S + N + F + + + + + K + Sbjct: 56 IARVLGVRLGTFLDDQSELGPVICRKKDSNDTNSIGFSNNDSKARKHMEYHSLSQDKSGR 115 Query: 118 KIIELVRSIVSSEK 131 + + + SE Sbjct: 116 HMEPFLIDVAPSED 129 >gi|210634331|ref|ZP_03298067.1| hypothetical protein COLSTE_01989 [Collinsella stercoris DSM 13279] gi|210158858|gb|EEA89829.1| hypothetical protein COLSTE_01989 [Collinsella stercoris DSM 13279] Length = 206 Score = 47.1 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 37/80 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +I+ RR +G+SQE+L E L ++ Q + +E+ L +S + ++ I Sbjct: 1 MDISNQIKTRREAMGISQEQLAEKLYVSRQTISNWERNKTYPDVQSLLMLSILFDTSIDT 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 T+ + + M Sbjct: 61 LVKGDVTIMEEAVERDRKRM 80 >gi|331091796|ref|ZP_08340628.1| hypothetical protein HMPREF9477_01271 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402695|gb|EGG82262.1| hypothetical protein HMPREF9477_01271 [Lachnospiraceae bacterium 2_1_46FAA] Length = 77 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R ++QE + + L + ++YE G+ + L I++ + + ++ Sbjct: 4 KRLKDLRTDHDLTQENMADILKCHREVYRRYESGIRTIPIDYLVTIAKYYNTSTDYLLEL 63 Query: 77 SP 78 + Sbjct: 64 TD 65 >gi|301300079|ref|ZP_07206297.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852311|gb|EFK79977.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 242 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 1/105 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G RI+ RR L +S + + E LG++ V +YEKG V + L+ ++EVL++ ++ Sbjct: 4 IGYRIKQRRKELKLSADVVAEKLGVSRSTVFRYEKGDIEKVPTTILEKLAEVLKTTPAYL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 S + + D +++ ++ + + R+K Sbjct: 64 IGWESENNSAYTKMLHESFDSLNSYRKRKVIDFSKLQLSEQNREK 108 >gi|300310215|ref|YP_003774307.1| DNA-binding repressor transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300073000|gb|ADJ62399.1| DNA-binding repressor transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 145 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 15/121 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R+ LG SQE G+ Q YE+G + +S+ + +S+ Sbjct: 7 GERLKSERLRLGFSQEAFAAVGGVRKQAQISYEQGKTLPDIGFMAAVSK-IGVDVSYVIF 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 PT + S E+ Q+ + F ++ D+ + +++ ++ +E + Sbjct: 66 GIPTADALTSDEQ-------------QVLQGFRRL-DIIGKARVLGVIEGAAPAEAGRKN 111 Query: 136 I 136 Sbjct: 112 A 112 >gi|299067065|emb|CBJ38261.1| putative transcription regulator protein [Ralstonia solanacearum CMR15] Length = 113 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I +GKR++ R SQE L + + E+G+ L +I L + Sbjct: 20 ISIALGKRVKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICHCLGVTL 79 Query: 71 SFFF 74 S F Sbjct: 80 SELF 83 >gi|223986671|ref|ZP_03636661.1| hypothetical protein HOLDEFILI_03983 [Holdemania filiformis DSM 12042] gi|223961357|gb|EEF65879.1| hypothetical protein HOLDEFILI_03983 [Holdemania filiformis DSM 12042] Length = 124 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 3/118 (2%) Query: 1 MVGNKKIPNPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M KK + VD +G+R+R RM L ++QE L E +G++ + E G N+V Sbjct: 1 MSKEKK--DHVDYCLLGQRVRRARMKLNLTQEVLAEKVGVSIPTISHIETGTNKVSLELF 58 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 I+ L S + ++ +P ++ + +R+ Sbjct: 59 VSIANALNVTPDELIMDSVPKLTAFYMKDIREELKDCSPAEYKILTEMLASMKAALRR 116 >gi|9633025|ref|NP_050133.1| hypothetical protein phiadhp25 [Lactobacillus phage phiadh] gi|5730282|emb|CAB52503.1| hypothetical protein [Lactobacillus phage phiadh] Length = 112 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 5/93 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF---- 72 RI+ R+ +SQ +LG + + Q + YE G Q +++ + + Sbjct: 2 NRIKNLRIANNISQAELGNKVNASNQAISAYESGFRNPKPETWQALADFFNVSVPYLQGK 61 Query: 73 -FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + D+ + +++ I ++ Sbjct: 62 IFKEDLSPELQDMFDDIQDLVTLIVPDYAVERV 94 >gi|127511903|ref|YP_001093100.1| XRE family transcriptional regulator [Shewanella loihica PV-4] gi|126637198|gb|ABO22841.1| transcriptional regulator, XRE family with cupin sensor [Shewanella loihica PV-4] Length = 182 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 34/71 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R + G+SQ +L + G+T + EK S L+ + L + Sbjct: 1 MDIGANLKAVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVD 60 Query: 73 FFDVSPTVCSD 83 FF + ++ ++ Sbjct: 61 FFSIEESMPTE 71 >gi|320093956|ref|ZP_08025785.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319979114|gb|EFW10628.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 80 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G+SQ L E +G+T Q + E G + I L + F Sbjct: 22 RMKAARAGRGLSQASLAEQVGVTRQTISAVESGDYNPTIALCVRICRALGVTLDDLF 78 >gi|304398841|ref|ZP_07380711.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304353545|gb|EFM17922.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 210 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 36/71 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIRLRR L ++Q++L + + ++ + ++EK L ++E L +F Sbjct: 6 LGDRIRLRRKSLQLTQKQLAQQVKVSHVAISQWEKEETLPRGENLLRLAEALGCAPAFLI 65 Query: 75 DVSPTVCSDIS 85 D V S+ + Sbjct: 66 DGDGPVFSESA 76 >gi|160897719|ref|YP_001563301.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160363303|gb|ABX34916.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 214 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 5/112 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R LG+SQE G++ YE G N L I + Sbjct: 27 QRLREERKRLGLSQEAFASLGGVSKNTQSNYETGANLPDVGYLNTI-RGFGVDSGYVLTG 85 Query: 77 ----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P+ + L+L + R +++ Sbjct: 86 IRTFDPSAIEHAQPAATLAARLVQERKRLELTVGQLAAKSGVDRLALLKFEE 137 >gi|71904455|ref|YP_281258.1| phage transcriptional repressor [Streptococcus pyogenes phage 6180.3] gi|94991387|ref|YP_599487.1| phage transcriptional repressor [Streptococcus phage 10270.4] gi|71803550|gb|AAX72903.1| phage transcriptional repressor [Streptococcus pyogenes phage 6180.3] gi|94544895|gb|ABF34943.1| phage transcriptional repressor [Streptococcus phage 10270.4] Length = 66 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 34/66 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG +I+ R+ LG + E+ G+ G + V +EKG N + L I+++ +S Sbjct: 1 MTVGDKIKTIRLNLGETMEEFGKRFGTSKGTVNNWEKGRNLPNRNSLLRIAQLANQTVSD 60 Query: 73 FFDVSP 78 F ++ Sbjct: 61 FLAITD 66 >gi|163846261|ref|YP_001634305.1| helix-turn-helix domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222524016|ref|YP_002568486.1| helix-turn-helix domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163667550|gb|ABY33916.1| helix-turn-helix domain protein [Chloroflexus aurantiacus J-10-fl] gi|222447895|gb|ACM52161.1| helix-turn-helix domain protein [Chloroflexus sp. Y-400-fl] Length = 422 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 10/114 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +R+R R+ GM+ L + +T Q + KYE G + + LQ +++ L + Sbjct: 1 MISQRLRQLRLARGMTLSDLAQATNHIVTRQAISKYEHGHAQPSPTVLQRLAQALGVRPT 60 Query: 72 FFFDVSP--------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 D + + + ++ + ++ + R I D +V Sbjct: 61 DLLDGANIRVDVVAYRKRASLGKRQSEHLAALAEEALRERVRLQRLIGDTRVLD 114 >gi|330957317|gb|EGH57577.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 182 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVE 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FF P + + + + ++D ++L Sbjct: 61 FFSEETVPENSAQVVYKASELIDISDGAVTMKLV 94 >gi|310829543|ref|YP_003961900.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium limosum KIST612] gi|308741277|gb|ADO38937.1| Methylase involved in ubiquinone/menaquinone biosynthesis [Eubacterium limosum KIST612] Length = 380 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 1/109 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + RI R G+SQ+ L +G+T Q V K+E G L ++ E + Sbjct: 2 KAIQLRIGTLRKQKGISQKMLAGAIGVTPQSVSKWETGAALPDIGLLPALATFFEVSVDE 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ D + + L R ++ + Q +IE Sbjct: 62 LL-GLKSLPDDAYEPSGTGLSGYWSERMEYLKRTRSRLWNKDYFQFLIE 109 >gi|289671657|ref|ZP_06492547.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae FF5] gi|302187361|ref|ZP_07264034.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae 642] gi|330941463|gb|EGH44274.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330954133|gb|EGH54393.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae Cit 7] gi|330970149|gb|EGH70215.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 182 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 1/101 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++L R +SQ +L G+T + E+ S L+ + E + ++ FF Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 D +G +L + ++R Sbjct: 64 FDQPPGQDQYV-FRAGDQPDLGRNGARLLLVGATLPSRQMR 103 >gi|166032705|ref|ZP_02235534.1| hypothetical protein DORFOR_02420 [Dorea formicigenerans ATCC 27755] gi|166027062|gb|EDR45819.1| hypothetical protein DORFOR_02420 [Dorea formicigenerans ATCC 27755] Length = 257 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 54/139 (38%), Gaps = 10/139 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + I R GMSQ++L + + +T Q V ++E G L+ +S+ + I+ Sbjct: 3 MEIKNIILKLRTERGMSQDELADKIMVTRQAVSRWENGATVPNTDTLKLLSKEFDVSINT 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV------KVRQKIIEL-VRS 125 + + + LN + + ++I++ V++ Sbjct: 63 LLGEPRKLICQCCGMPIDDDSILGRDKDGTLNEEYCKWCYADGTYTYNDMDELIDVCVKN 122 Query: 126 IVSS---EKKYRTIEEECM 141 +V+ E++ R +E + Sbjct: 123 MVNENFTEEQARFYLKEML 141 >gi|157363615|ref|YP_001470382.1| cupin 2 domain-containing protein [Thermotoga lettingae TMO] gi|157314219|gb|ABV33318.1| Cupin 2 conserved barrel domain protein [Thermotoga lettingae TMO] Length = 177 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R+ G++QE+L ++ + + E + L+ I L + + Sbjct: 1 MNIGGKIKRLRLSRGLTQEELAMRTDLSRSFISQLESNKTSLAVDTLEKILRALGTDLKA 60 Query: 73 FFDVSPTVCSDISSEEN 89 FF E+ Sbjct: 61 FFSEEEEAKIVFKKEDR 77 >gi|66045941|ref|YP_235782.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63256648|gb|AAY37744.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a] Length = 203 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 1/101 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++L R +SQ +L G+T + E+ S L+ + E + ++ FF Sbjct: 25 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 84 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 D +G +L + ++R Sbjct: 85 FDQPPGQDQYV-FRAGDQPDLGRNGARLLLVGATLPSRQMR 124 >gi|6458757|gb|AAF10602.1|AE001954_6 epoxidase, putative [Deinococcus radiodurans R1] Length = 161 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 28/74 (37%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++G R+R R ++ E++ + G+ + + E+ + + L Sbjct: 4 AETRAAAPDRSAHIGARLRAIRQQKRLTLEQVVQGSGLDKSYLSRLERDLTTPSVATLVK 63 Query: 62 ISEVLESPISFFFD 75 + + L FD Sbjct: 64 VCDALGIRPGELFD 77 >gi|15807634|ref|NP_294753.1| transcription regulator [Deinococcus radiodurans R1] Length = 190 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 28/74 (37%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++G R+R R ++ E++ + G+ + + E+ + + L Sbjct: 4 AETRAAAPDRSAHIGARLRAIRQQKRLTLEQVVQGSGLDKSYLSRLERDLTTPSVATLVK 63 Query: 62 ISEVLESPISFFFD 75 + + L FD Sbjct: 64 VCDALGIRPGELFD 77 >gi|119773818|ref|YP_926558.1| XRE family transcriptional regulator [Shewanella amazonensis SB2B] gi|119766318|gb|ABL98888.1| transcriptional regulator, XRE family [Shewanella amazonensis SB2B] Length = 504 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRV 54 + ++K +G +IR R ++ E L + E+G Sbjct: 1 MTSEKSLMRQSHFLGTKIRNLRKRNHLTMEDLSSRCVRVDPGSAPSVSYLSMIERGKRVP 60 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSDISS 86 A+ L+ I++V E +F D +P + Sbjct: 61 SAAMLEVIAKVFEKSPDWFLDDAPEEDAITPD 92 >gi|317472207|ref|ZP_07931536.1| hypothetical protein HMPREF1011_01886 [Anaerostipes sp. 3_2_56FAA] gi|331088310|ref|ZP_08337229.1| hypothetical protein HMPREF1025_00812 [Lachnospiraceae bacterium 3_1_46FAA] gi|316900296|gb|EFV22281.1| hypothetical protein HMPREF1011_01886 [Anaerostipes sp. 3_2_56FAA] gi|330408554|gb|EGG88020.1| hypothetical protein HMPREF1025_00812 [Lachnospiraceae bacterium 3_1_46FAA] Length = 120 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 41/105 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI++ R+ G++QE + + + IT + E G +V L I+ L + Sbjct: 6 KAIGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALSVSVDT 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + +E + ++ ++ + R+ Sbjct: 66 LLCDNVIASKIVFEKEAKDIFSDCDEYEVRFLVDLMKSAKIAFRK 110 >gi|253577026|ref|ZP_04854349.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843636|gb|EES71661.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 143 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 25/68 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +QE+LG L +T + YE G L IS V I + S Sbjct: 6 RLKQLRKEHKWTQEELGAKLNLTKVSISGYENGNRTPDMDTLIKISNVFNVSIDYLVGKS 65 Query: 78 PTVCSDIS 85 D Sbjct: 66 DVRSVDSP 73 >gi|315499237|ref|YP_004088041.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB 48] gi|315417249|gb|ADU13890.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB 48] Length = 267 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 7/112 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IRL R ++ + +GIT ++++ E G + AS L +S +LE P+S FF Sbjct: 16 IGRNIRLFREQKRVTLSDMALGIGITSDRLKRIESGKLKPSASELLRVSRILERPVSDFF 75 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV--KVRQKIIELVR 124 + + +D + L R + I K R+ +LV+ Sbjct: 76 GGEGHLPPGVRP-----IDLWFSQSILPHARAYFGIAYSLTKHREAANDLVQ 122 >gi|228962124|ref|ZP_04123604.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797560|gb|EEM44693.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pakistani str. T13001] Length = 108 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 45/108 (41%), Gaps = 7/108 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R ++Q+ + + LGI + ++E G + + + ++ + + + Sbjct: 5 GQRLKDLRREKKLTQQDIADVLGIEKSNISRFESGKQSLSSENIIKTAKYFDVSVDYILG 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +S + EE D ++L + + + RQ I L+ Sbjct: 65 ISDYKTINKKKEEQIPKD------VVKLIKKINTL-SPEKRQLIESLI 105 >gi|134287382|ref|YP_001110765.1| putative repressor [Clostridium phage phiC2] gi|93117220|gb|ABE99510.1| putative repressor [Clostridium phage phiC2] Length = 131 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 44/130 (33%), Gaps = 12/130 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G+S +KL E L I + + E G+ S ++ + + + Sbjct: 2 NRIKELREEKGISLDKLSEDLHINKSTLSRIENGLREPKKSTIEEYANYFDVSTDYLLGR 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD------------VKVRQKIIELVR 124 + S ++ D + +L +D R+K +++ Sbjct: 62 TDVRNSLFINKNEKDYDAENFKTEKELIENMYLDEDMKEVFNIFSELSPDAREKALKVAE 121 Query: 125 SIVSSEKKYR 134 + EK + Sbjct: 122 LFLLDEKNKK 131 >gi|254975373|ref|ZP_05271845.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092763|ref|ZP_05322241.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255314502|ref|ZP_05356085.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517179|ref|ZP_05384855.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650283|ref|ZP_05397185.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683399|ref|YP_003214684.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686995|ref|YP_003218128.1| putative transcriptional regulator [Clostridium difficile R20291] gi|306520257|ref|ZP_07406604.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|260209562|emb|CBA63177.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260213011|emb|CBE04338.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 181 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+N+G++I R +S L + +T + + E+G+ + L+ I+ L P+ Sbjct: 3 DLNLGEKIAEVRKKQNLSIRDLAKLADVTPSLLSQIERGLANPSVNSLKSIASSLNVPLF 62 Query: 72 FFF 74 FF Sbjct: 63 TFF 65 >gi|83589108|ref|YP_429117.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572022|gb|ABC18574.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 115 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R G+ QE + +G+ V +E+G + G L +S + + Sbjct: 5 GESLKELRQRKGLRQEDVARMVGVERPTVANWERGTKQPGLETLVRLSRLFGVSLDELVG 64 Query: 76 VSPTVCS 82 V Sbjct: 65 VERAATP 71 >gi|75908414|ref|YP_322710.1| XRE family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702139|gb|ABA21815.1| transcriptional regulator, XRE family [Anabaena variabilis ATCC 29413] Length = 83 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 30/75 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ GK IR RR L SQE+L E G+ + E G ++ +++ L I Sbjct: 8 IEYRFGKAIRRRRRELDYSQEELAEKAGLHRNYISSIETGTRNPSLKNIEKLAKALNISI 67 Query: 71 SFFFDVSPTVCSDIS 85 S F D Sbjct: 68 SDLFTNYGIEAEDTE 82 >gi|295704048|ref|YP_003597123.1| transcriptional regulator [Bacillus megaterium DSM 319] gi|294801707|gb|ADF38773.1| transcriptional regulator [Bacillus megaterium DSM 319] Length = 291 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 1/90 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R + G++Q++L + T Q+ K E G + L IS+ L +++FF Sbjct: 6 IGSVMRDLRKMAGLTQQELSRDI-CTQAQISKIENGEEYPSSITLYKISKRLGVDVNYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D + D +++ Sbjct: 65 DSVESPRLDYVDAVQSLIRQYIRQRDYDAI 94 >gi|283834367|ref|ZP_06354108.1| transcriptional regulator, Cro/CI family [Citrobacter youngae ATCC 29220] gi|291069908|gb|EFE08017.1| transcriptional regulator, Cro/CI family [Citrobacter youngae ATCC 29220] Length = 185 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P GKR+ R LG+SQ + E G+T + E+ S LQ Sbjct: 1 MSDDGLAP-------GKRLSEIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQ 53 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +V +S FF + + + ++++ S ++L Sbjct: 54 KLLKVYGLSLSEFFAEPEKPDEPQVVINQEDLIEIGSQGVSMKLV 98 >gi|291287342|ref|YP_003504158.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884502|gb|ADD68202.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 178 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L M+ E + + G T + + E G N + L+ I L + IS F+ Sbjct: 4 GIKLREIRKKLSMTLEDISQKTGFTKSFISQIENGKNSPSIASLKKICYALGTTISELFE 63 Query: 76 VS 77 Sbjct: 64 DE 65 >gi|209546022|ref|YP_002277912.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538879|gb|ACI58812.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 227 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 34/78 (43%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 32 KENNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRAL 91 Query: 67 ESPISFFFDVSPTVCSDI 84 P++ FF + + Sbjct: 92 GVPMTAFFRRFEEPRNAV 109 >gi|218960438|ref|YP_001740213.1| hypothetical protein CLOAM0093 [Candidatus Cloacamonas acidaminovorans] gi|167729095|emb|CAO80006.1| hypothetical protein CLOAM0093 [Candidatus Cloacamonas acidaminovorans] Length = 356 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 37/66 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG++I+ R L +S ++L + LG+T + YE+G +V L ISE+++ P+ + Sbjct: 1 MNVGEKIKKYRKRLNISGKELAQKLGVTPALISYYEQGKRQVPLKTLMQISEIIKVPLEY 60 Query: 73 FFDVSP 78 Sbjct: 61 LVTDKE 66 >gi|146298449|ref|YP_001193040.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146152867|gb|ABQ03721.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 137 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 7/135 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+ I R + M QE L +G QQ +G V +L+ I+E L Sbjct: 7 KHIGRNISRIRELRDMKQEALAIAIGTN-QQSISIIEGSESVDEEKLKKIAEALGVSAET 65 Query: 73 FFDVSPTVCSDISSEENNVMDFIST---PDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + S +I + + + G N I+ ++ +K L ++ Sbjct: 66 IKNFSEDAVFNIIGNTIEIENNTGSSVISYGCTFNPLDKLIESIEKNEK---LYERLIQI 122 Query: 130 EKKYRTIEEECMVEQ 144 E++ E+ + ++ Sbjct: 123 EREKAAYLEKLLDKK 137 >gi|126699831|ref|YP_001088728.1| putative regulatory protein [Clostridium difficile 630] gi|254975814|ref|ZP_05272286.1| putative regulatory protein [Clostridium difficile QCD-66c26] gi|255093200|ref|ZP_05322678.1| putative regulatory protein [Clostridium difficile CIP 107932] gi|255101354|ref|ZP_05330331.1| putative regulatory protein [Clostridium difficile QCD-63q42] gi|255307230|ref|ZP_05351401.1| putative regulatory protein [Clostridium difficile ATCC 43255] gi|255314943|ref|ZP_05356526.1| putative regulatory protein [Clostridium difficile QCD-76w55] gi|255517617|ref|ZP_05385293.1| putative regulatory protein [Clostridium difficile QCD-97b34] gi|255650728|ref|ZP_05397630.1| putative regulatory protein [Clostridium difficile QCD-37x79] gi|255656203|ref|ZP_05401612.1| putative regulatory protein [Clostridium difficile QCD-23m63] gi|260683814|ref|YP_003215099.1| putative regulatory protein [Clostridium difficile CD196] gi|260687474|ref|YP_003218608.1| putative regulatory protein [Clostridium difficile R20291] gi|296450363|ref|ZP_06892120.1| probable regulatory protein [Clostridium difficile NAP08] gi|296878775|ref|ZP_06902776.1| probable regulatory protein [Clostridium difficile NAP07] gi|306520643|ref|ZP_07406990.1| putative regulatory protein [Clostridium difficile QCD-32g58] gi|115251268|emb|CAJ69099.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260209977|emb|CBA63985.1| putative regulatory protein [Clostridium difficile CD196] gi|260213491|emb|CBE05194.1| putative regulatory protein [Clostridium difficile R20291] gi|296260773|gb|EFH07611.1| probable regulatory protein [Clostridium difficile NAP08] gi|296430203|gb|EFH16049.1| probable regulatory protein [Clostridium difficile NAP07] Length = 112 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 3/103 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G RI++ R LG SQE L E G+ + + E+ + + I+ L+ P+ Sbjct: 4 IGKIIGDRIKVYRTKLGYSQEFLAEKAGLHPTYIGQIERAETNTSINIIMKIATALDIPL 63 Query: 71 SFFFD---VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 F + V + + E +++ ++ + + + I Sbjct: 64 ELLFANIITTEGVDNSVPLECYEMINKLTEKEQIAMLELIKCI 106 >gi|39998387|ref|NP_954338.1| Cro/CI family transcriptional regulator [Geobacter sulfurreducens PCA] gi|39985333|gb|AAR36688.1| transcriptional regulator, Cro/CI family [Geobacter sulfurreducens PCA] gi|298507328|gb|ADI86051.1| transcriptional regulator with cupin-like beta-barrel domain, putative [Geobacter sulfurreducens KN400] Length = 187 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++ + + G + + + E + L I++ + IS FF Sbjct: 6 IGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVKISLFF 65 Query: 75 DVSPTV 80 Sbjct: 66 SEDEEE 71 >gi|325130150|gb|EGC52929.1| DNA-binding protein [Neisseria meningitidis OX99.30304] gi|325202207|gb|ADY97661.1| DNA-binding protein [Neisseria meningitidis M01-240149] gi|325208038|gb|ADZ03490.1| DNA-binding protein [Neisseria meningitidis NZ-05/33] Length = 123 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 12/122 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R L M+Q ++ E G++ + YE+G+++ A E + + + Sbjct: 8 GNRLKEERKKLKMTQAEIAEKCGVSGRMWGDYERGISQPKAELFFQF-EKVGIDVQYVMH 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + SE N + +L F + R+ I+ + R +EKK +T Sbjct: 67 GRRGETAVMPSETLNAEE-------QELLALFREAA-AADREMILMVARR---AEKKAQT 115 Query: 136 IE 137 Sbjct: 116 AL 117 >gi|302344468|ref|YP_003808997.1| XRE family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301641081|gb|ADK86403.1| transcriptional regulator, XRE family [Desulfarculus baarsii DSM 2075] Length = 189 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI R G+S E++ + G+ Q + E L I+ L + Sbjct: 4 KKLGERIADYRQKQGLSLEQMAQRTGLDQQFLSAVEAHDLYPSLGPLIKIARTLGVRLGT 63 Query: 73 FFDV 76 F D Sbjct: 64 FLDD 67 >gi|291550119|emb|CBL26381.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 128 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 8/124 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R +L ++Q++ E + + V YE G + S + I + + Sbjct: 3 ERIKKLRKVLKLTQQEFAESIKVKRNTVATYEMGRSIPSDSAIALICKTFNVNEEWLRSG 62 Query: 77 SPTVCSDISSEENN--VMDFISTPDGLQLNRYFIQID------DVKVRQKIIELVRSIVS 128 + + ++ E+ + + L + +I K ++ I + + Sbjct: 63 AGDMFLELPEEDEEAAYVSELLEDSDNDLYKLIKEIMHTYHELSPKSKEVICDFSAKLRE 122 Query: 129 SEKK 132 + KK Sbjct: 123 NIKK 126 >gi|228915212|ref|ZP_04078807.1| transcriptional regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844443|gb|EEM89499.1| transcriptional regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 117 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ G++Q++L + +G++ V Y +G G LQ I+ L+ + Sbjct: 5 ERLKSLIEKKGITQQQLADVIGVSHVSVYNYVEGKKAPGTRTLQKIANYLKVTTDY---- 60 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + S + D T + ++ + + + + R+K +E + V+ EK Sbjct: 61 --LLLLSDSPDLTAGQDLQLTKEAHEILQIINDLPEEQ-RKKALEQLEMFVNYEKSK 114 >gi|225377777|ref|ZP_03754998.1| hypothetical protein ROSEINA2194_03428 [Roseburia inulinivorans DSM 16841] gi|225210361|gb|EEG92715.1| hypothetical protein ROSEINA2194_03428 [Roseburia inulinivorans DSM 16841] Length = 120 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 50/128 (39%), Gaps = 8/128 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +RI M+Q + + +GI + +++K A ++ I VL+ Sbjct: 1 MTISERILKVLKDRNMTQAEFAKQVGIATSTISEWKKRKTNPTADKIMDICNVLQITPEQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + F TP +QL + + + + + +++++ + ++ K Sbjct: 61 LLTGKGIEDEENINVTSRESCF--TPYDIQLVQDYHGLKEEQ-QKRLMAYMEAL-----K 112 Query: 133 YRTIEEEC 140 EE Sbjct: 113 KIQSLEEI 120 >gi|210623634|ref|ZP_03293960.1| hypothetical protein CLOHIR_01910 [Clostridium hiranonis DSM 13275] gi|210153504|gb|EEA84510.1| hypothetical protein CLOHIR_01910 [Clostridium hiranonis DSM 13275] Length = 181 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 36/76 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R+ ++QE+L ++ + + E + + L I E+L + + Sbjct: 3 MEIGKKIKRLRIEKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILEILGTNLKE 62 Query: 73 FFDVSPTVCSDISSEE 88 FF+ + + ++ Sbjct: 63 FFNDTESEKIVFVKDD 78 >gi|254252819|ref|ZP_04946137.1| hypothetical protein BDAG_02063 [Burkholderia dolosa AUO158] gi|124895428|gb|EAY69308.1| hypothetical protein BDAG_02063 [Burkholderia dolosa AUO158] Length = 232 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 7/103 (6%) Query: 1 MVGNKKIP---NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M P ++ + +R+R R G + + L G++ + E+ A Sbjct: 26 MQEETTPPGGDASINERIARRVRDLRATRGYTLDALAARSGVSRSMISLVERASASPTAV 85 Query: 58 RLQHISEVLESPISFFFDVS----PTVCSDISSEENNVMDFIS 96 L ++ L ++ F PT+ +E+ D S Sbjct: 86 VLDKLAAGLGVSLAALFSGDRNDTPTLPLVRRAEQAEWRDPAS 128 >gi|110804036|ref|YP_699966.1| Helix-turn-helix domain protein [Clostridium phage phiSM101] gi|110684537|gb|ABG87904.1| Helix-turn-helix domain protein [Clostridium phage phiSM101] Length = 120 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 39/118 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R LG++Q + + + ++ E G + + I + ++ Sbjct: 3 NRVKELRKSLGLTQNEFADKINMSRSNFGSIETGRVNLTDRVINDICKAFSVNKTWLTSG 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + I S+E + ++ ++ E V ++ + + + Sbjct: 63 EGEMYDIIDSDEQFHRILGEWLVNCDQVTKDTVLSLNQLTREEFEFVSRMLKNLSQNK 120 >gi|29376650|ref|NP_815804.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29344114|gb|AAO81874.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 70 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ +R LG +QE + +GI YE+G + ++++L+ P + FFD Sbjct: 5 LKKKRESLGYTQESFAKEIGIAKTTYSSYEQGYRNPTVQTAKKMAKILQVPWTIFFDEE 63 >gi|116688944|ref|YP_834567.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116647033|gb|ABK07674.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 132 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 1/104 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I +R G++Q KL E + + + V ++E+G RLQ +S+ L + Sbjct: 21 VGTAIAEQRRARGLTQAKLAEMIDLEQEAVSRWERGTRVPTLHRLQQLSDALNCSVDQLL 80 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 D + + +D + + + +L F+Q +R K Sbjct: 81 QRGSKRPDDQLAMIADALDGLDSDE-RELVVNFVQQFADMLRAK 123 >gi|326564808|gb|EGE15019.1| putative phage represso [Moraxella catarrhalis 103P14B1] Length = 109 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 10/92 (10%), Positives = 29/92 (31%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R++ R G++Q+++ E + Q + +R ++ + + + Sbjct: 1 MELKNRLKHARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSKSTTRAVELAHLFGVDVHW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + STP Sbjct: 61 LISGEGEMTKNNDKLTPITEWDDSTPLDDDEV 92 >gi|292557970|gb|ADE30971.1| DNA-binding protein [Streptococcus suis GZ1] Length = 179 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 40/111 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G + R ++Q +LGE LG+T + V ++E G+ L+ +S + I+ Sbjct: 4 VKMGSFLAELRKEQKLTQAELGEKLGVTNKTVSRWETGIYMPPVEILEELSRLYGLTINE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + + +L R+ I ++ Sbjct: 64 ILSGRKLTTEEYKEMAESNIRETLKASTFELKEKQEFFKKKWRREHISTII 114 >gi|229168069|ref|ZP_04295797.1| hypothetical protein bcere0007_30280 [Bacillus cereus AH621] gi|228615313|gb|EEK72410.1| hypothetical protein bcere0007_30280 [Bacillus cereus AH621] Length = 242 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELVAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP--------DGLQLNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + ++ + + + ++ ++ + Sbjct: 64 LICYTPQMKQEDIKNLYHRLAEAFSEEPFDEVMMECREVTKKYYSCFPLLIQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDMDRRIEILEEAM 141 >gi|291287416|ref|YP_003504232.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290884576|gb|ADD68276.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 182 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + GK ++ R+ M+ L + G + + + E+ + + L+ I++ L I+ Sbjct: 1 MEFGKTVKELRLKHNMTLRDLAKTSGCSISFLSQLERDLISPTVASLRKIADALGVTITS 60 Query: 73 FFDVSPTVCSDI 84 FF + I Sbjct: 61 FFSGDDSETDSI 72 >gi|219667624|ref|YP_002458059.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537884|gb|ACL19623.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 63 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR R +SQE L + ++ Q + E S ++EVL+ + F Sbjct: 3 NNIRQYRKEKNISQEDLAKRCNVSRQTINAIENNKYDPTLSLAFKLAEVLQVTVDELF 60 >gi|160893603|ref|ZP_02074387.1| hypothetical protein CLOL250_01157 [Clostridium sp. L2-50] gi|156864588|gb|EDO58019.1| hypothetical protein CLOL250_01157 [Clostridium sp. L2-50] Length = 145 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 40/98 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +++ +R LG+SQ++L E G+ + + YE G + ++L +++ LE + + Sbjct: 5 GAKVKEQRGNLGLSQKQLAEKAGMGIRTITSYELGERKPYQAQLYKLAKALEVSTEYLQN 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + S V D + + + Sbjct: 65 DNIEDPSYGLDRMEYVEDMRKNSGTREALDLQKMLAEN 102 >gi|134282471|ref|ZP_01769175.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|167723927|ref|ZP_02407163.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|237508582|ref|ZP_04521297.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|134246028|gb|EBA46118.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|235000787|gb|EEP50211.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] Length = 94 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 24/67 (35%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R SQE+L E G+ V + E+G + ++ PI+ Sbjct: 9 GAAIRQLREARAWSQEQLAEHAGLNRSYVGEIERGTAIASIVTVDKLARAFGVPIARLLS 68 Query: 76 VSPTVCS 82 + Sbjct: 69 PAGDAEP 75 >gi|113867425|ref|YP_725914.1| anaerobic benzoate catabolism transcriptional regulator [Ralstonia eutropha H16] gi|113526201|emb|CAJ92546.1| shikimate kinase containing a XRE-type HTH DNA-binding domain [Ralstonia eutropha H16] Length = 313 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 48/122 (39%), Gaps = 7/122 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P +G+RIR R GMS++ L G++ + + E G L+ ++ L+ Sbjct: 32 DPYLTLLGERIRSLRASRGMSRKDLARGAGVSERYLANLETGTGNASVLLLRQVARALDV 91 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR-------YFIQIDDVKVRQKIIE 121 P+ + + ++E ++ +++ L R + R + I Sbjct: 92 PLPVVLAEVDGLNGEQATEFAQMVQWLAQLPAGDLARVREACRHALAPAESGDARHRRIA 151 Query: 122 LV 123 L+ Sbjct: 152 LI 153 >gi|13095660|ref|NP_076781.1| repressor [Lactococcus phage bIL311] gi|15673929|ref|NP_268104.1| prophage ps3 protein 15 [Lactococcus lactis subsp. lactis Il1403] gi|12724988|gb|AAK06045.1|AE006425_2 prophage ps3 protein 15 [Lactococcus lactis subsp. lactis Il1403] gi|12831082|gb|AAK08434.1|AF323672_2 repressor [Lactococcus phage bIL311] Length = 235 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 42/91 (46%), Gaps = 6/91 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N K +++G+RI+ R GM+ E+ G V ++E+G++ R++ Sbjct: 1 MNNNK------VDIGQRIKSIRTKKGMTLEEFGALFSAGKGLVSRWERGISTPNPERIKA 54 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVM 92 IS+V ++ + + + + ++ + Sbjct: 55 ISKVGDTSVEYILHGTMNEYIESLIDKLQMD 85 >gi|56963509|ref|YP_175240.1| transcriptional repressor of PBSX genes [Bacillus clausii KSM-K16] gi|56909752|dbj|BAD64279.1| transcriptional repressor of PBSX genes [Bacillus clausii KSM-K16] Length = 101 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R+ ++ ++LG+ L + + YE G + L +++ + Sbjct: 4 SRLKECRIKKQLTMKELGQALNMAQSTISGYENGTRKPDLDNLARLADYFNVSTDYLVGR 63 Query: 77 SPTVCSDISSEENNVMD-FISTPDGLQLNR 105 + S I + D + D LQL R Sbjct: 64 LDSNDSFILHSDQLTSDEKLFLADCLQLYR 93 >gi|116618965|ref|YP_819336.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097812|gb|ABJ62963.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 203 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R+ L +Q+++ L +T Q V +E L +S+ L + Sbjct: 1 MELGQKLKECRLALNKTQQQMATELHVTRQTVSHWENNDTYPSLDMLVTLSDYLGFSLDT 60 Query: 73 FFDVSPTVCSDISSEE 88 T D ++E Sbjct: 61 TLKEEGTDMIDSINKE 76 >gi|332559101|ref|ZP_08413423.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|332276813|gb|EGJ22128.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 211 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R L +S L E G++ + + E+G+ R ++ IS+ L P + Sbjct: 7 IGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFWLL 66 Query: 75 DVSPTVCSD 83 ++ + Sbjct: 67 EMPDQHNPE 75 >gi|325695606|gb|EGD37506.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] Length = 113 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+R+++ R + ++Q ++ E L I+ Q +E+GV + L I+++L + + Sbjct: 1 MKFGERLKILRKQVKLTQSQIAEKLDISQQAYASWERGVKKPTQENLIKIAQILNVTVDY 60 Query: 73 FFDVSPTVCSD 83 S + Sbjct: 61 LVGNSEEQSDE 71 >gi|319784815|ref|YP_004144291.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170703|gb|ADV14241.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 238 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 8/97 (8%) Query: 5 KKIPNPV--------DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 + P+ + ++ +G+ +R R LG++ L I+ + K E G+ Sbjct: 35 TQNPHAIRDTREKVLEVAIGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSL 94 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 + LQ +S L P++ FF S + + +D Sbjct: 95 TTLQALSRALGVPVTAFFRRFEEERSAVFVKAGQGLD 131 >gi|303241951|ref|ZP_07328444.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590506|gb|EFL60261.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 103 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 2/94 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +D +GKRI+ R G+S KL GI+ + + E + A L I + L Sbjct: 2 NNID--LGKRIKELRKQSGLSTTKLSNLTGISSGYISELENNLKSPSAEILLKIIDALNI 59 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ FF P+ +E + + L+ Sbjct: 60 TVASFFYEFPSEPLSSDLKELVTAAKDLSSENLE 93 >gi|260460417|ref|ZP_05808669.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259034062|gb|EEW35321.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 238 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 8/97 (8%) Query: 5 KKIPNPV--------DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 + P+ + ++ +G+ +R R LG++ L I+ + K E G+ Sbjct: 35 TQNPHAIRDTREKVLEVAIGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSL 94 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 + LQ +S L P++ FF S + + +D Sbjct: 95 TTLQALSRALGVPVTAFFRRFEEERSAVFVKAGQGLD 131 >gi|296130064|ref|YP_003637314.1| helix-turn-helix domain protein [Cellulomonas flavigena DSM 20109] gi|296021879|gb|ADG75115.1| helix-turn-helix domain protein [Cellulomonas flavigena DSM 20109] Length = 403 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 13/139 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R+ G+SQ L + + E G + L ++E L + + F Sbjct: 4 IGDRVREARLAAGLSQTALAGNAF-SPSYISLIEAGHREPTDAALGVLAERLGTTLEFLK 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-------DVKVR-QKIIELVRS- 125 + E + +I +R + + L R+ Sbjct: 63 HGEDGPNEARTRLELDYARLDLASG--DAAGAAHRITALDLSVVTPVLRVEALTTLARAH 120 Query: 126 -IVSSEKKYRTIEEECMVE 143 ++ + T+ E + E Sbjct: 121 ELLGELETAITLLEPLLTE 139 >gi|225390253|ref|ZP_03759977.1| hypothetical protein CLOSTASPAR_04004 [Clostridium asparagiforme DSM 15981] gi|225043678|gb|EEG53924.1| hypothetical protein CLOSTASPAR_04004 [Clostridium asparagiforme DSM 15981] Length = 195 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 43/116 (37%), Gaps = 5/116 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + ++ V K I+ R +S ++L + G++ + + E+G S L Sbjct: 7 MERSAFLDQMNQIVAKNIKRLREERKLSMDELSKLSGVSKSMLAQIERGGGNPTISTLWK 66 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 IS ++ P + S + + + + G + + D + R+ Sbjct: 67 ISNGMKVPFDAL---TVRPKSPYELVKTSDLQPLLEDGGK--VKNYSIFPDDENRR 117 >gi|237809770|ref|YP_002894210.1| helix-turn-helix domain-containing protein [Tolumonas auensis DSM 9187] gi|237502031|gb|ACQ94624.1| helix-turn-helix domain protein [Tolumonas auensis DSM 9187] Length = 355 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 33/61 (54%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+ R G+S + LG+ +G++ ++KYE N + + +++VL +F Sbjct: 1 MIGERLLRARAAAGLSMKALGDLVGVSANMIKKYEHNQNMPSSGVMIKLAKVLSVRSEYF 60 Query: 74 F 74 F Sbjct: 61 F 61 >gi|221640096|ref|YP_002526358.1| XRE family transcriptional regulator [Rhodobacter sphaeroides KD131] gi|221160877|gb|ACM01857.1| Transcriptional regulator, XRE family [Rhodobacter sphaeroides KD131] Length = 211 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R L +S L E G++ + + E+G+ R ++ IS+ L P + Sbjct: 7 IGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFWLL 66 Query: 75 DVSPTVCSD 83 ++ + Sbjct: 67 EMPDQHNPE 75 >gi|183599870|ref|ZP_02961363.1| hypothetical protein PROSTU_03389 [Providencia stuartii ATCC 25827] gi|188022143|gb|EDU60183.1| hypothetical protein PROSTU_03389 [Providencia stuartii ATCC 25827] Length = 113 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 41/94 (43%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N N +G+ I+ R S K+ LGI+ QQ +YE+GVN + L + Sbjct: 1 MNNVIPKNFFTKVIGEEIKRLRKASSFSGTKMASELGISQQQYSRYERGVNTISVDALLN 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFI 95 I +L+ +S FF + E + + + Sbjct: 61 ILCILDCDVSSFFSYLRQQIEKDNHELYDTLKPL 94 >gi|186470871|ref|YP_001862189.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184197180|gb|ACC75143.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 234 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 10/136 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R RM+ ++ + L E G + + K E G + L I+ L++ I+ Sbjct: 45 LGTRLRHARMVQQLTLKALAEQAGCSESLLSKVEGGHATPSLATLHRIALALDTNIAALV 104 Query: 75 DVSPTVCSDI--SSEENNVMDFISTPDGLQLNRYFIQI--------DDVKVRQKIIELVR 124 + I +SE +V + + R I ++ Q I ++ Sbjct: 105 SGPVATVTPIQRASERPSVRFPGAQQTAGRHARARSSIMLERLVVAGPGQLLQGDIHVLE 164 Query: 125 SIVSSEKKYRTIEEEC 140 + S+++ EE Sbjct: 165 PLARSDEQISHAGEEL 180 >gi|22124180|ref|NP_667603.1| transcriptional repressor [Yersinia pestis KIM 10] gi|45443665|ref|NP_995204.1| putative transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|21956939|gb|AAM83854.1|AE013626_1 transcriptional repressor [Yersinia pestis KIM 10] gi|45438535|gb|AAS64081.1| putative transcriptional regulatory protein [Yersinia pestis biovar Microtus str. 91001] Length = 162 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 16/113 (14%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R +Q+++ +G+ Q KYE G++ A +L ++E+L + I + Sbjct: 46 GLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSIDYLLL 105 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVRSI 126 S S I + +L F + + ++ +I+L+ ++ Sbjct: 106 GSSNETSSIRN--------------TRLLERFKALSQCQPEEQETVIKLIDAV 144 >gi|119383229|ref|YP_914285.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119372996|gb|ABL68589.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 204 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 30/99 (30%), Gaps = 4/99 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R G S + E +G+ + + E L I + + F Sbjct: 16 ERLRALRERKGWSLNRAAEEVGVPPSTLSRIENRKMSPTLDLLLKIVRTFDMHPNDVFSG 75 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 P + S P ++L F + + Sbjct: 76 RPDQQEKQEISVSR----ASDPALIELPNLFYKHLHPDM 110 >gi|77464212|ref|YP_353716.1| XRE family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126463054|ref|YP_001044168.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|77388630|gb|ABA79815.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides 2.4.1] gi|126104718|gb|ABN77396.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17029] Length = 211 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R L +S L E G++ + + E+G+ R ++ IS+ L P + Sbjct: 7 IGQRLRQIRKNLALSLSGLSERSGVSVGTLSQLERGLGRPSLRTIERISQALGVPPFWLL 66 Query: 75 DVSPTVCSD 83 ++ + Sbjct: 67 EMPDQHNPE 75 >gi|332798978|ref|YP_004460477.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332696713|gb|AEE91170.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 85 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 31/80 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ + R G++Q L LG++ + YE G G + I++ I + F Sbjct: 6 NRLAMLRNSKGLTQRDLANELGVSPSTIAMYEIGERTPGLKMAKIIADFFGVGIEYIFFT 65 Query: 77 SPTVCSDISSEENNVMDFIS 96 + + ++ I+ Sbjct: 66 AGAYEKEAKIRDSQHDANIA 85 >gi|321157319|emb|CBW39301.1| Helix-turn-helix DNA binding protein [Streptococcus pneumoniae] Length = 116 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 10/122 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++Q + E LGI+ +E+G + L I++VL I + Sbjct: 5 ERLKNLRKQAHLTQVDVAEKLGISQPAYASWERGAKKPTQDNLVKIAQVLNVSIDYLVGN 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 S + + ++ +++ + + + EL+ + +K ++ I Sbjct: 65 SDEHLKEDELDNVELLFRMNSNGLTEEEKAIFKK----------ELIEFMEKRKKAFKKI 114 Query: 137 EE 138 + Sbjct: 115 SK 116 >gi|302184902|ref|ZP_07261575.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae 642] Length = 182 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVE 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FF P + + + + ++D ++L Sbjct: 61 FFSEETVPENAAQVVYKASELIDISDGAVTMKLV 94 >gi|294850418|ref|ZP_06791150.1| transcriptional regulator [Staphylococcus aureus A9754] gi|294822761|gb|EFG39198.1| transcriptional regulator [Staphylococcus aureus A9754] Length = 117 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 1/106 (0%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D VG I+ RM G+++E++G + I + + E L + Sbjct: 2 RKKEDKYDFRAVGLAIKEARMKRGLTREQVGTMIEIDPRYLTNIENNGQHPSTQVLYDLV 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +L I FF + + T L L + Sbjct: 62 SLLHVSIDEFFLPTDNSIKSTRRLQVEKYMDSFTDKELSLMEALAK 107 >gi|228899959|ref|ZP_04064198.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 4222] gi|228964335|ref|ZP_04125453.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar sotto str. T04001] gi|228795344|gb|EEM42833.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar sotto str. T04001] gi|228859670|gb|EEN04091.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 4222] Length = 107 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T +++ SE V D +++ + R F Sbjct: 61 LLHDETTKATNLDSEWTQLVKDAMNSGVSKEQFREF 96 >gi|162448594|ref|YP_001610961.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] gi|161159176|emb|CAN90481.1| transcriptional regulator [Sorangium cellulosum 'So ce 56'] Length = 230 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 2/100 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V ++ R G+S E+L + G++ + + E G + + L I+ L P S Sbjct: 51 VASNLKRFRAERGLSLERLAKASGVSRAMLGQIELGQSTPTINVLWKIARALGVPFSALM 110 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 S + + + + + +G +R +D + Sbjct: 111 --SQATSPVTTVMQASHARILRSRNGDFSSRALFPMDRPR 148 >gi|15674958|ref|NP_269132.1| putative repressor protein [Streptococcus pyogenes M1 GAS] gi|13622103|gb|AAK33853.1| putative repressor protein - phage associated [Streptococcus pyogenes M1 GAS] Length = 248 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 2/100 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-PISFFFDVS 77 ++ R+ ++ E+L E +G T + K+EKG ++ I++ P F + Sbjct: 11 VKELRLSKNLTMEQLAEEVGKTKSTISKWEKGTRSPKIYEIEEIAKFFGVEPKKMMFGDN 70 Query: 78 PTVCSDISSEENNVMDFI-STPDGLQLNRYFIQIDDVKVR 116 PT + + + I ST L+ R +D + + Sbjct: 71 PTPTAPQVELIPSTLQKINSTSSQLEHKRQLNVLDYAETQ 110 >gi|77408024|ref|ZP_00784773.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77413847|ref|ZP_00790025.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77160087|gb|EAO71220.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77173386|gb|EAO76506.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 112 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 27/73 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++Q+ + G + Q++E G + A L+ + + Sbjct: 4 ERLKSLRKEAKLTQKDIASQFGFSQPAYQQWESGKKKPSAETLEKFASFFNVSTDYLLGN 63 Query: 77 SPTVCSDISSEEN 89 + ++ E Sbjct: 64 TNKKNANDLDIEK 76 >gi|330828143|ref|YP_004391095.1| DNA-binding protein [Aeromonas veronii B565] gi|328803279|gb|AEB48478.1| DNA-binding protein [Aeromonas veronii B565] Length = 189 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 49/135 (36%), Gaps = 6/135 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++ R++ R G S + ++ + + E+G + + L I+ Sbjct: 4 MSQHLAARLKGLRSERGWSLDATARETSVSKAMLGQIERGESSPTVATLWKIATGFRVSF 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR-SIVSS 129 S F + P +++ + + +G+Q+ F + EL+ +++ Sbjct: 64 SSFIEPIPAAQAEVLYRTADAIRQQPAGEGMQVAPLF-----PYENRFGFELLELTLLPG 118 Query: 130 EKKYRTIEEECMVEQ 144 ++ E + E Sbjct: 119 YQRESEPHEPGVTEH 133 >gi|331650592|ref|ZP_08351661.1| putative transcriptional regulator [Escherichia coli M605] gi|323948704|gb|EGB44608.1| helix-turn-helix protein [Escherichia coli H252] gi|331040563|gb|EGI12724.1| putative transcriptional regulator [Escherichia coli M605] Length = 121 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 5/113 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGI-----TFQQVQKYEKGVNRVGASRLQHISEVLES 68 V KR++ RM G+SQEKL + LG+ T + YE G ++ I+E+L+ Sbjct: 1 MVPKRLKEARMEAGLSQEKLSQLLGVAEGINTRSRFSSYEVGRTEPPFKLVKKIAELLDY 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 P ++F+ + P+ + +KI+ Sbjct: 61 PENYFYTEDDDFAKAVLDFHRKRTSPELNPNYDSEVEARRMASKLDNVKKIVA 113 >gi|291540748|emb|CBL13859.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 121 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 31/68 (45%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P I +GKRIR R ++Q++L + G+ + +Q EKG L + + L Sbjct: 1 MPEDKFIFLGKRIRSARKECQLTQQELADQSGLAVKTIQDIEKGRKNPTYETLCLLVDRL 60 Query: 67 ESPISFFF 74 + F Sbjct: 61 GISGNTIF 68 >gi|237794603|ref|YP_002862155.1| transcriptional regulator [Clostridium botulinum Ba4 str. 657] gi|229262963|gb|ACQ53996.1| transcriptional regulator [Clostridium botulinum Ba4 str. 657] Length = 136 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I+ R ++QE+LG+ +G+T V YE + L I+E F Sbjct: 1 MLGDKIKKLRKSKNITQEELGKNIGVTTSMVGMYETNARKPSYEVLIKIAEFFSVSTDFL 60 Query: 74 FDVSP 78 + Sbjct: 61 LNTEE 65 >gi|254518274|ref|ZP_05130330.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] gi|226912023|gb|EEH97224.1| transcriptional regulator [Clostridium sp. 7_2_43FAA] Length = 110 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 2/90 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G+SQE L E +G++ Q V K+E + +L +S V I Sbjct: 8 EKLQGLRKEKGLSQEGLAELVGVSRQSVAKWESKKSYPEVDKLVQLSNVFGVSIDKLLKN 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRY 106 C + E ++ I L R Sbjct: 68 IEEECCN--KEIKKSINGIDEKIIDFLCRA 95 >gi|255655369|ref|ZP_05400778.1| putative phage repressor [Clostridium difficile QCD-23m63] Length = 118 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 45/107 (42%), Gaps = 2/107 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 KR+R R G++Q +LGE +G++ + + YE L +++V + + + Sbjct: 4 KRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFDVSVDYLLGR 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + +++ N + + QLN Y + + + K + Sbjct: 64 TLVKENIDTVAAHRKNPHEELPEEAQEQLNDYIEFLLNKYKKNKPYD 110 >gi|207722896|ref|YP_002253330.1| hypothetical protein RSMK05553 [Ralstonia solanacearum MolK2] gi|206588080|emb|CAQ18660.1| hypothetical protein RSMK05553 [Ralstonia solanacearum MolK2] Length = 182 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G + E L E G+T + K E+G++ + ++ L P F Sbjct: 4 RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF-GE 62 Query: 78 PTVCSDIS 85 P S I+ Sbjct: 63 PAAASAIT 70 >gi|169344650|ref|ZP_02865615.1| LexA repressor [Clostridium perfringens C str. JGS1495] gi|169297260|gb|EDS79372.1| LexA repressor [Clostridium perfringens C str. JGS1495] Length = 365 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 2/128 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R +SQE + L I + YE+ + L +SEV+ I + Sbjct: 14 LKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSEPPIYTLVKMSEVMNCSIDELLGTTK 73 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV--RQKIIELVRSIVSSEKKYRTI 136 + S + + +L I+ + + +++ ++ + S+K+ + Sbjct: 74 EITSSTKEKFSYSELTEKIYYLNELIDKNIKTYEDLIMSKKRTERMLDELSMSKKRTERM 133 Query: 137 EEECMVEQ 144 +E ++ + Sbjct: 134 FDELLMSK 141 >gi|160933712|ref|ZP_02081100.1| hypothetical protein CLOLEP_02573 [Clostridium leptum DSM 753] gi|156867589|gb|EDO60961.1| hypothetical protein CLOLEP_02573 [Clostridium leptum DSM 753] Length = 81 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 24/66 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G+SQ ++ L I YE G + A +L ++ F +S Sbjct: 11 RLKALRKRRGLSQSQVAAALRIDRSTYAYYELGRTPLPAEKLVFLALYYRVSSDFLLGLS 70 Query: 78 PTVCSD 83 Sbjct: 71 ERESGS 76 >gi|149003996|ref|ZP_01828803.1| phage transcriptional repressor [Streptococcus pneumoniae SP14-BS69] gi|147757978|gb|EDK64985.1| phage transcriptional repressor [Streptococcus pneumoniae SP14-BS69] Length = 252 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 51/121 (42%), Gaps = 11/121 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + I+ R + G++Q++L + L + + +E G N+ + ++ +S + S Sbjct: 4 LAQNIKYYRKLSGLTQKELAKKLSVAPTAISAWEVGRNQPLMNNIEQMSAIFGIKKSLLL 63 Query: 75 -DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK----------VRQKIIELV 123 + + +S + D + P ++ Y + D + V +K+++L Sbjct: 64 GEDFSSHVDKATSPIQTIYDELKPPRQAKVLNYAKRQLDEQKNEEETKINEVSEKVLDLY 123 Query: 124 R 124 + Sbjct: 124 Q 124 >gi|90416630|ref|ZP_01224561.1| putative DNA-binding protein [marine gamma proteobacterium HTCC2207] gi|90331829|gb|EAS47057.1| putative DNA-binding protein [marine gamma proteobacterium HTCC2207] Length = 192 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 41/120 (34%), Gaps = 10/120 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++ +P + R+ R ++ ++L G++ + + E+G + Sbjct: 1 MSNSQSDNDPASQALSSRVTALRKKNKLTLDQLAGASGVSRSMLSQIERGQANPTLTVTF 60 Query: 61 HISEVLESPISFFFD----------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 I++ I D V S++ + +P ++ + F ++ Sbjct: 61 RIAQAFGMSIGELVDQAWQSSTIEVVHGEDKSNLFRNDKECQIRTLSPLHMEKSIEFYEL 120 >gi|15676896|ref|NP_274042.1| transcriptional regulator [Neisseria meningitidis MC58] gi|7226247|gb|AAF41408.1| transcriptional regulator [Neisseria meningitidis MC58] gi|316985888|gb|EFV64829.1| helix-turn-helix family protein [Neisseria meningitidis H44/76] gi|325134226|gb|EGC56875.1| DNA-binding protein [Neisseria meningitidis M13399] gi|325140273|gb|EGC62798.1| DNA-binding protein [Neisseria meningitidis CU385] gi|325200308|gb|ADY95763.1| DNA-binding protein [Neisseria meningitidis H44/76] gi|325206164|gb|ADZ01617.1| DNA-binding protein [Neisseria meningitidis M04-240196] Length = 123 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 12/122 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R L M+Q ++ E G++ + YE+G+++ A E + + + Sbjct: 8 GNRLKEERKKLKMTQAEIAEKCGVSGRMWGDYERGISQPKAELFFQF-EKVGIDVQYVMH 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + SE N + +L F + R+ I+ + R +EKK +T Sbjct: 67 GRRGETAVMPSETLNAEE-------QELLVLFREAA-AADREMILMVARR---AEKKAQT 115 Query: 136 IE 137 Sbjct: 116 AL 117 >gi|83309267|ref|YP_419531.1| anaerobic benzoate catabolism transcriptional regulator [Magnetospirillum magneticum AMB-1] gi|82944108|dbj|BAE48972.1| Shikimate kinase [Magnetospirillum magneticum AMB-1] Length = 290 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 4/114 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R++ R GMS++ L GI+ + + + E G V + L +++ +++PI+ Sbjct: 12 RRLGDRVKGFRARRGMSRKDLSSHAGISERYLAQLEGGQANVSVNILWLLAQAMDTPITE 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ----LNRYFIQIDDVKVRQKIIEL 122 + +D ++ + L + F + +K R +I L Sbjct: 72 LIEAEAEASHPDLPLAKKFLDQLTPDQQSEAYVLLRQNFKRGLKLKRRVALIGL 125 >gi|61680543|pdb|1Y7Y|A Chain A, High-Resolution Crystal Structure Of The Restriction- Modification Controller Protein C.Ahdi From Aeromonas Hydrophila gi|61680544|pdb|1Y7Y|B Chain B, High-Resolution Crystal Structure Of The Restriction- Modification Controller Protein C.Ahdi From Aeromonas Hydrophila gi|32263455|gb|AAP78483.1| C.AhdI [Aeromonas hydrophila] Length = 74 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+R+R R G+SQE L G+ V E+G V + ++ L+ Sbjct: 12 VKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRE 71 Query: 73 FF 74 F Sbjct: 72 LF 73 >gi|134298768|ref|YP_001112264.1| helix-turn-helix domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051468|gb|ABO49439.1| helix-turn-helix domain protein [Desulfotomaculum reducens MI-1] Length = 255 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 1/116 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R G++Q +L G+T + + E+G + L+ +SEV+ +F Sbjct: 139 LGYKLKHLREEYGLTQAQLANLAGVTAGLIGQIEQGKVQPSLKTLEKLSEVMGVSPCYFI 198 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 V +S + + + P+ + + + K Q I+ ++ SE Sbjct: 199 MEPGAVDQMVSLMNPELRELLIHPNVQAVLGLVCNL-NEKELQFILNFIQLFKKSE 253 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 36/77 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR+ R G+S ++L + +GI+ + + E+G + L+ ++E L P + Sbjct: 74 LGEKIRIIRNETGLSLQELADKIGISLSYLSEIERGTVYPALNTLKRVAEGLGVPATALM 133 Query: 75 DVSPTVCSDISSEENNV 91 ++ + Sbjct: 134 GHEGSLGYKLKHLREEY 150 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +IR R G + + L ++ + + E+G R + ++ L + + Sbjct: 5 GDQIRALREERGYTLQDLARRAKLSLSYLSEIERGSKRPSLKTIDKLAAALNVSKTQLVE 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 T E+ + I GL L +I Sbjct: 65 GEITDSGLGLGEK---IRIIRNETGLSLQELADKI 96 >gi|330964277|gb|EGH64537.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 182 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVE 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FF P + + + + ++D ++L Sbjct: 61 FFSEETVPENSAQVVYKASELIDISDGAMTMKLV 94 >gi|328957769|ref|YP_004375155.1| transcriptional regulator, XRE family [Carnobacterium sp. 17-4] gi|328674093|gb|AEB30139.1| transcriptional regulator, XRE family [Carnobacterium sp. 17-4] Length = 307 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 51/129 (39%), Gaps = 1/129 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I +G ++ R G +Q+++ + + K+E S+ I + ++ Sbjct: 4 INIPIGSTLKKIRENKGYTQKEISD-HTMARSTYTKFENDDITPTLSKYLAILDHMDMSH 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F + + + L+L I+ + V+++ +L+ I+++ Sbjct: 63 EEFIYLLNDFELGQKETILYLFKQLDKNPTLELVYEIIEKGETLVQERYDQLILDILNAC 122 Query: 131 KKYRTIEEE 139 + Y + EE Sbjct: 123 RGYAVLFEE 131 >gi|328949375|ref|YP_004366712.1| hypothetical protein Tresu_2553 [Treponema succinifaciens DSM 2489] gi|328449699|gb|AEB15415.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 93 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 29/70 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++IR R I G+SQ +L LG+T Q V +E L I+ E + + Sbjct: 4 EQIRELRNIRGISQIQLANKLGVTKQSVSNWENDNILPSIEMLVKIANFFEVSTDYLLGL 63 Query: 77 SPTVCSDISS 86 D+ + Sbjct: 64 DKKRTLDVEN 73 >gi|322436743|ref|YP_004218955.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321164470|gb|ADW70175.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 73 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 28/63 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IR R G SQE+L E G+ V E+G VG + +++ L F+ Sbjct: 11 GKSIRTLREERGYSQEELAERAGLHRNYVGGIERGERNVGLENIVKLAKALSVKSRDLFE 70 Query: 76 VSP 78 P Sbjct: 71 SLP 73 >gi|291541151|emb|CBL14262.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 179 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R +SQ+ G +GI+ + YE G + I+E I + Sbjct: 18 NLKELRQEHSLSQKDFGASIGISAMAISSYESGTKSPSIDTVCRIAETYHVSIDWL 73 >gi|291441034|ref|ZP_06580424.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291343929|gb|EFE70885.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 190 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 9/109 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R ++ L E GI+ + + E G+ R L I++ + P+ Sbjct: 10 VGPRLRRIRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIAQAHQVPLDELV 69 Query: 75 D----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 P V S ++ G + + + + R+K+ Sbjct: 70 GAPPVGDPRVRSKPIERYGRTHWPLTRQPGG--LQAYKVL---EPRRKL 113 >gi|229148196|ref|ZP_04276499.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|228635208|gb|EEK91735.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] Length = 115 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I+ R ++QE+L E G++ Q++ +E + L+ ++ + Sbjct: 5 VGQNIKQLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTDALL 64 Query: 75 DVSPTVCSDIS 85 + + Sbjct: 65 NFENRKEDALL 75 >gi|225027560|ref|ZP_03716752.1| hypothetical protein EUBHAL_01817 [Eubacterium hallii DSM 3353] gi|224955076|gb|EEG36285.1| hypothetical protein EUBHAL_01817 [Eubacterium hallii DSM 3353] Length = 180 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + + P+ VG+ I R L ++Q++L E LG+T + V K+E G + ++ + Sbjct: 10 ERENMVEPI--KVGRFIAQNRKDLNLTQKELAEKLGVTDRAVSKWENGRSIPDVGIIESL 67 Query: 63 SEVLESPISFFFDVSP 78 + L I FF Sbjct: 68 CKELNISIGEFFAGEK 83 >gi|126732539|ref|ZP_01748337.1| transcriptional regulator, putative [Sagittula stellata E-37] gi|126706985|gb|EBA06053.1| transcriptional regulator, putative [Sagittula stellata E-37] Length = 433 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 46/127 (36%), Gaps = 4/127 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P D G RIR +R+ GM Q +L + GI+ + E R+G L I++ L Sbjct: 2 PRDTLTGSRIREKRIAQGMRQSELAKIAGISASYLNLIEHNRRRIGGKLLLEIADALSVE 61 Query: 70 ISFFFDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRS 125 + + + E + + F D V R ++ +L RS Sbjct: 62 PTHLTEGAGAALIAGLREAASDLPDAGAELDRTDEFAGRFPGWADLLVATRARVQQLERS 121 Query: 126 IVSSEKK 132 + + Sbjct: 122 VEVLNDR 128 >gi|28557093|dbj|BAC57552.1| immunity repressor protein [Clostridium sordellii] Length = 133 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G + +++ + L T + +YE G + L +S+ I + F + Sbjct: 7 RLKELRKEKGYTLDQMAQDLNTTKVTLSRYENGTREPKSETLNQLSDYFNVSIDYLFGKT 66 Query: 78 PTVCSDISSE 87 E Sbjct: 67 DERNPKTKDE 76 >gi|330985511|gb|EGH83614.1| AraC family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 225 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 35/93 (37%), Gaps = 4/93 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R G++Q +LG G+ + + KYE G + L +++ L Sbjct: 7 ERLAHLRAEKGLTQRELGAAAGVAWSMISKYESGKSAPRLKVLMKLADALGVSADEL--- 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 S +++ F S + N F + Sbjct: 64 -KGALSKQTNKLKIYDGFSSRLIAARANAAFSR 95 >gi|330866552|gb|EGH01261.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330895723|gb|EGH28013.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330943309|gb|EGH45692.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. pisi str. 1704B] gi|330952098|gb|EGH52358.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae Cit 7] gi|330972181|gb|EGH72247.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 182 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVE 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FF P + + + + ++D ++L Sbjct: 61 FFSEESVPENAAQVVYKASELIDISDGAVTMKLV 94 >gi|322375869|ref|ZP_08050380.1| putative toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] gi|321279137|gb|EFX56179.1| putative toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. C300] Length = 111 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 12/113 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRIRL R+ ++Q++L E + + K E + LQ I + L++ I F Sbjct: 9 YLGKRIRLLRLQKNLTQQQLEELADLPLKYTYKLENLEPNIKIKTLQKIMDALDTDIETF 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 FD+S T + + ++ + I +V + +I+L+ I Sbjct: 69 FDISVTESNPLINQLIYK------------IKELTPIKQERVLKLMIQLIDEI 109 >gi|319409214|emb|CBI82858.1| transcriptional regulator (fragment) [Bartonella schoenbuchensis R1] Length = 95 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 39/96 (40%), Positives = 62/96 (64%), Gaps = 5/96 (5%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 MSQ+ L LGI+FQQ+QKYEKG+NRVGA RL+ I+++ + PISFF+ + T + Sbjct: 1 MSQKTLAHHLGISFQQIQKYEKGLNRVGAGRLKDIADIFDVPISFFYPDTTTKEGGV--- 57 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 ++ + IS+ + L + F + VK ++ I+EL+ Sbjct: 58 -HHHDEIISSKEEYLLLKSFRVLTSVK-QKAILELI 91 >gi|237748255|ref|ZP_04578735.1| predicted protein [Oxalobacter formigenes OXCC13] gi|229379617|gb|EEO29708.1| predicted protein [Oxalobacter formigenes OXCC13] Length = 138 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 7/130 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R LG+SQ +L E GIT + + YE G L + + + + + Sbjct: 4 IGERLKEERKRLGLSQMELCELTGITRKTLFSYETGERSPNVLFLSALFD-HDFDVDYIL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + +N I + + Q + L + ++E Sbjct: 63 KGELDR---LRPSLLKKIQDAAESAFQMVNSTDIAVTPAQFAQMLTSL---LATAETDKN 116 Query: 135 TIEEECMVEQ 144 E + Sbjct: 117 EQENAVQTDH 126 >gi|220911413|ref|YP_002486722.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858291|gb|ACL38633.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 198 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R++ R+ ++ L GI+ + + E G R L +++ + Sbjct: 6 DDVLAAVGPRLKALRLRRDVTLTALAAATGISVSTLSRLESGQRRPNLELLLPLAQAHQV 65 Query: 69 PISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 P+ P V + + ++ G + + I Sbjct: 66 PLDELVGAPATGDPRVHLRPMTAHGMTIIPLTRKPGG--VQAYKHI 109 >gi|153955543|ref|YP_001396308.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855938|ref|YP_002473060.1| hypothetical protein CKR_2595 [Clostridium kluyveri NBRC 12016] gi|146348401|gb|EDK34937.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569662|dbj|BAH07646.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 109 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 39/76 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GKRIR R+ L ++QEKL E + ++ V + E+G V L I++ L + + Sbjct: 4 IALGKRIREERLKLRLTQEKLAEDVDVSSSYVGQIERGEKSVTLDTLIRITKRLGVTVDY 63 Query: 73 FFDVSPTVCSDISSEE 88 S + +D ++ Sbjct: 64 LLKDSVNMENDNFIDQ 79 >gi|323357690|ref|YP_004224086.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323274061|dbj|BAJ74206.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 209 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 35/78 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G R+R R G++ +L E ++ + + E+G+ R + L+ ++ L + Sbjct: 17 DERLGARVRGLRKARGLTLTQLAEAAALSHPFLSQLERGLARPSMASLERLARALGTSRV 76 Query: 72 FFFDVSPTVCSDISSEEN 89 S +D +E + Sbjct: 77 ELIAASEPRRADADAEPS 94 >gi|310642245|ref|YP_003947003.1| merr family transcriptional regulator [Paenibacillus polymyxa SC2] gi|309247195|gb|ADO56762.1| MerR family transcriptional regulator [Paenibacillus polymyxa SC2] Length = 179 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 31/90 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R +S +++ E G++ + + E + L I+ L P++F Sbjct: 3 IGCNIRAARKRKNLSIQQICERTGLSQGFMSQVENNKTSPSIATLDSIANALNVPLAFLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 I +E + + Sbjct: 63 LKEEERMQVIRKDERRKTLYGKNKLQVDHL 92 >gi|229829704|ref|ZP_04455773.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles DSM 14600] gi|229791693|gb|EEP27807.1| hypothetical protein GCWU000342_01801 [Shuttleworthia satelles DSM 14600] Length = 141 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + R +SQE+L E +G++ Q + KYE G + + + +++ I Sbjct: 6 NLIELRKYHDLSQEELAEKIGVSRQTLSKYETGESLPDIEKGKLLADAFGVSIDDLISYD 65 Query: 78 PTVCSDI 84 ++ Sbjct: 66 KNKEDNL 72 >gi|226526961|ref|YP_002790980.1| transcriptional regulator [Lactobacillus brevis] gi|226442553|dbj|BAH56423.1| transcriptional regulator [Lactobacillus brevis] Length = 65 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +IR R +SQ +L E +G+ Q V E +I+ VL++ + F+ Sbjct: 3 NKIREYRKKKNLSQAELAEKVGLARQTVSLLENKSYNPSLKVCLNIANVLDTTLDSLFN 61 >gi|207743919|ref|YP_002260311.1| helix-turn-helix domain transcription regulator protein [Ralstonia solanacearum IPO1609] gi|206595321|emb|CAQ62248.1| probable helix-turn-helix domain transcription regulator protein [Ralstonia solanacearum IPO1609] Length = 118 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 16/133 (12%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + ++G+ + RR G++Q+++ E L I + V + E+G+ RL Sbjct: 1 MPPENNQHGELFKSIGRTLAQRREAKGLTQDQVAEALHIGTEAVSRMERGITMPTVQRLA 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++EV E I S T D + +L + R I+ Sbjct: 61 ELAEVYECGIDELLIASSTRTGDQA----------------ELISQILHTLPEADRAMIV 104 Query: 121 ELVRSIVSSEKKY 133 E+V+ I + K Sbjct: 105 EVVQRIAARLKDR 117 >gi|160894257|ref|ZP_02075034.1| hypothetical protein CLOL250_01810 [Clostridium sp. L2-50] gi|156863958|gb|EDO57389.1| hypothetical protein CLOL250_01810 [Clostridium sp. L2-50] gi|295099077|emb|CBK88166.1| Helix-turn-helix. [Eubacterium cylindroides T2-87] Length = 209 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R++ RR+ L ++Q + E +G+T + +YE G + +SE L + + Sbjct: 10 IGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ + + QL + +D + ++ +++ Sbjct: 70 KGETDEYETDITDKRELQIRDAMGDILEQLPLALTKEEDAFSKDLLLLMLKQ 121 >gi|56696936|ref|YP_167298.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56678673|gb|AAV95339.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 207 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D +G R+R R + E+ G+ + K E G L+ ++ L+ Sbjct: 24 PLD--LGARVRELRKARDWTLEQAASQAGLARSTLSKIENGQMSPTYDALKKLAVGLQIS 81 Query: 70 ISFFFD 75 + F Sbjct: 82 VPQLFT 87 >gi|13476100|ref|NP_107670.1| hypothetical protein mll7326 [Mesorhizobium loti MAFF303099] gi|14026860|dbj|BAB53456.1| mll7326 [Mesorhizobium loti MAFF303099] Length = 192 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 37/83 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R LG++ L I+ + K E G+ + LQ +S L P+ Sbjct: 2 LEVAIGREVRAFRKKLGITVADLAVATDISLGMLSKIENGITSPSLTTLQALSRALGVPV 61 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + FF S + + +D Sbjct: 62 TAFFRRFEEERSAVFVKAGEGLD 84 >gi|329119145|ref|ZP_08247836.1| helix-turn-helix domain protein [Neisseria bacilliformis ATCC BAA-1200] gi|327464776|gb|EGF11070.1| helix-turn-helix domain protein [Neisseria bacilliformis ATCC BAA-1200] Length = 119 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 1/99 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ +GK I R G++QE++ E L I + V + E+G+ RL ++E+ + Sbjct: 6 SEINKRIGKAIAKYRQERGLTQEQVAEILQIGNEAVSRMERGLIMPNVVRLVELAEIFQC 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + S D + + + ++ ++ QL +F Sbjct: 66 TAADLLAESSPRLFDKTHKIHLLISDLA-KTDRQLMLHF 103 >gi|317491327|ref|ZP_07949763.1| cupin domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920874|gb|EFV42197.1| cupin domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 185 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 5/117 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V + GKR+ R LG+SQ + E G+T + E+ S LQ + +V Sbjct: 2 SDVSLAPGKRLSHIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGL 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 +S FF + I + I + + + ++ + Sbjct: 62 SLSEFFAEQEKPDEPQVVINAEDLIEIGSQGV-----SMKLIHNGNPNRTLAMMIET 113 >gi|313124538|ref|YP_004034797.1| transcriptional regulator (xre family) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281101|gb|ADQ61820.1| Putative transcriptional regulator (Xre family) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 122 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 35/85 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK +R R GMSQ++L LG++ Q + +E G ++ I+ + + Sbjct: 5 MIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVEKIANIFGVSRNSV 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTP 98 P +E+ + ++ Sbjct: 65 LAGLPVEMLVQEGQEDRRVVDLTDH 89 >gi|295101684|emb|CBK99229.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 255 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 30/61 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R GM+Q++L L ++ + V K+E+G++ S L ++E L ++ Sbjct: 10 GHFLAQLRREKGMTQKELAATLYVSDKAVSKWERGLSVPDISLLVPLAEQLNVTVAELLQ 69 Query: 76 V 76 Sbjct: 70 G 70 >gi|284007367|emb|CBA72754.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 134 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 37/96 (38%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++++ +R+ R G++Q+ L + I QQ+++YE G + A L+ ++ VL Sbjct: 9 INMSFSQRVVTLRKQRGLTQQGLSDATCIHVQQIKRYESGSSLPTADALKKLAVVLHVTS 68 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 F + + + + Sbjct: 69 DFLLFEPEECEPKDDMKLRFEALAAMSATDQAVVKA 104 >gi|302382023|ref|YP_003817846.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192651|gb|ADL00223.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 65 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R R G +QE+LG+ LG++ Q V E + I+ V P+ FD Sbjct: 5 LRDLRTSRGWTQEQLGQALGVSRQAVNALETEKHDPSLDLAYRIAAVFGQPVEAIFD 61 >gi|182624148|ref|ZP_02951935.1| transcriptional regulator [Clostridium perfringens D str. JGS1721] gi|177910764|gb|EDT73124.1| transcriptional regulator [Clostridium perfringens D str. JGS1721] Length = 141 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ R +SQE+L + L I+ Q + K+E G L + ++ + Sbjct: 5 NKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIDNLILLRKIFGVSLDEL 61 >gi|33326774|gb|AAQ08805.1| BzdR [Azoarcus sp. CIB] Length = 298 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 48/117 (41%), Gaps = 2/117 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + +G RIR R GM+++ L + G++ + + + E G + L+ I++ L Sbjct: 20 NNYLLMLGDRIRDLRAQRGMTRKMLAQQSGVSERYLAQLETGHGNISIILLRQIAQGLGF 79 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFI--STPDGLQLNRYFIQIDDVKVRQKIIELV 123 PI +++ + F + +L + ++ R++ I + Sbjct: 80 PIVDLVREEAEQSPELTLLIQYLSRFPPKTHEWARRLLQNELESSGRSARRQRIAFI 136 >gi|25012010|ref|NP_736405.1| hypothetical protein gbs1972 [Streptococcus agalactiae NEM316] gi|76787285|ref|YP_330541.1| transcriptional regulator [Streptococcus agalactiae A909] gi|24413553|emb|CAD47631.1| Unknown [Streptococcus agalactiae NEM316] gi|76562342|gb|ABA44926.1| transcriptional regulator, putative [Streptococcus agalactiae A909] Length = 164 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 28/70 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+R R + ++Q ++ LG+ YE+ + S L+ I+ + I + D Sbjct: 5 KRLRELRQLNNITQIEMANKLGLNRVTYTNYEREKSEPSISTLKEIATIFNVSIDYLIDF 64 Query: 77 SPTVCSDISS 86 + Sbjct: 65 EDDTKGKNNR 74 >gi|163939188|ref|YP_001644072.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229010668|ref|ZP_04167868.1| HTH-type transcriptional regulator sinR [Bacillus mycoides DSM 2048] gi|229132174|ref|ZP_04261032.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST196] gi|163861385|gb|ABY42444.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228651321|gb|EEL07298.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST196] gi|228750633|gb|EEM00459.1| HTH-type transcriptional regulator sinR [Bacillus mycoides DSM 2048] Length = 107 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T + SE V D +S+ + R F Sbjct: 61 LLHDETTTEGHLDSEWTQLVKDAMSSGVSKEQFREF 96 >gi|326402562|ref|YP_004282643.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325049423|dbj|BAJ79761.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 94 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + G +R R+ G+SQE + E +G+ V E+G V L H+++ L+ Sbjct: 2 DIRRIFGANLRHYRLAAGLSQEAVAERMGVDRAHVSSMERGSQNVTLITLWHLADALKIQ 61 Query: 70 ISFFFDVSPTVCSDISSEEN 89 + D +P + S Sbjct: 62 PADLLDTTPKPPVETSRPAR 81 >gi|325298681|ref|YP_004258598.1| helix-turn-helix domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324318234|gb|ADY36125.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM 18170] Length = 191 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 37/91 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R +S ++L E G+T Q+++ E ++ + L I+ L + F Sbjct: 7 IGEKIKDLRTAKEISIDELAERTGLTAGQIERIENNIDIPSLAPLLKIARALGVRLGTFL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 D + D IS + R Sbjct: 67 DDQSEEDGPVVCRRGEADDTISFSNNAVDAR 97 >gi|298290466|ref|YP_003692405.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296926977|gb|ADH87786.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 480 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 1/126 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R LG++Q L ++ + + E V A+ L IS + I+ F Sbjct: 11 GHAVRNVRERLGLTQIDFARRLSLSPSYINQIESNQRPVTAAVLLAISRTFDLDITRFGA 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F LQ + + L ++ +++ Sbjct: 71 DDLDRIVADLREALADPVFRGLEPSLQDLKNATTHA-PAFAHAFLRLHGALRRLDERRAA 129 Query: 136 IEEECM 141 +++ + Sbjct: 130 LDDAVV 135 >gi|255316610|ref|ZP_05358193.1| putative regulatory protein [Clostridium difficile QCD-76w55] Length = 116 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 3/103 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GKRIR R G SQE L + G+ + + E+G ++ + I+ LE P+ Sbjct: 6 IYAIIGKRIRNYRKRAGYSQEALAKKAGLFHAYLGQIERGESKASLRSIFKIANALEMPL 65 Query: 71 SFFFDV---SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 F+ + +SSE ++D +++ + + + +I Sbjct: 66 EILFENIIQNEKDPETLSSEAYELIDSLTSKEQKAIIKLLKEI 108 >gi|14520844|ref|NP_126319.1| repressor protein, putative [Pyrococcus abyssi GE5] gi|5458060|emb|CAB49550.1| Helix-turn-helix repressor protein family [Pyrococcus abyssi GE5] Length = 73 Score = 47.1 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 24/63 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G++QE+L LG+T Q + EKG I+ I F Sbjct: 3 NRLREFREKYGLTQEELARILGVTRQTIIAIEKGKYDPSLRLAFKIARFFGVRIEDIFIY 62 Query: 77 SPT 79 Sbjct: 63 EEE 65 >gi|332830202|gb|EGK02830.1| hypothetical protein HMPREF9455_01080 [Dysgonomonas gadei ATCC BAA-286] Length = 80 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 PNP+ + ++ R++ G++QE+L E + + + + + E G IS VL+ Sbjct: 12 PNPMPEFI-SHLKEYRILAGLTQEELAEKVNVRRETIIRLEAGKYNPSLKLGIDISRVLK 70 Query: 68 SPISFFFD 75 +PI F+ Sbjct: 71 APIEDIFE 78 >gi|325687904|gb|EGD29924.1| XRE family transcriptional regulator [Streptococcus sanguinis SK72] Length = 94 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+++ R G SQ ++ E LG T Q + +E + ++ L +++ + + Sbjct: 1 MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENNKTILDSASLIRLADFYQISLDEL 60 >gi|315925644|ref|ZP_07921854.1| XRE family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315621185|gb|EFV01156.1| XRE family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 235 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 34/80 (42%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + + +G IR+ R G++ + L + + + + KYE G + L ++E L Sbjct: 2 SEITVGIGHNIRIYRKKNGLTLDALSDLVFKSKSALSKYENGDISIDIETLYELAEALHI 61 Query: 69 PISFFFDVSPTVCSDISSEE 88 + V + +S+ Sbjct: 62 HVEQLLYVRKSNTKITTSDA 81 >gi|307244718|ref|ZP_07526820.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] gi|306491895|gb|EFM63946.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] Length = 71 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 31/67 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R G++Q++LG+ + ++ Q + E+G + ++++ + + F Sbjct: 5 NKLKEYRAQKGINQQELGKLVDVSRQTISLIERGDYNPSITLCLKLAKLFDVNVEDIFIY 64 Query: 77 SPTVCSD 83 +D Sbjct: 65 EEDEEND 71 >gi|295113444|emb|CBL32081.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Enterococcus sp. 7L76] Length = 115 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 19/122 (15%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 10 IREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLDNVD 69 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIEE 138 + + + + + I + ++ + E + + + Sbjct: 70 IDYEE------------------EFLALYRSLSTEDAIRTI-DYMKLLKRQENERNQLLK 110 Query: 139 EC 140 E Sbjct: 111 EL 112 >gi|295102882|emb|CBL00427.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 233 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+L R G++Q++ E LG++ + YEKG+ G + +++ + S Sbjct: 7 IKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLLGRSA 66 Query: 79 TVCSDISSEEN 89 + S E+ Sbjct: 67 ERNGMMLSAED 77 >gi|255531474|ref|YP_003091846.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344458|gb|ACU03784.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 109 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 9/114 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK IR R G SQ ++ + L I+ K E G+ + SRL I+ + E Sbjct: 4 IGKNIRQLRQKNGWSQGEVAKRLNISIPAFSKIETGITDINISRLAQIANLFEVSTMDII 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 ++ EE N + ++ K+++K+I+L I Sbjct: 64 SKEGENPQSLNFEEINGLKEKLAQREEEII---------KLQKKVIDLYEEIRE 108 >gi|225378702|ref|ZP_03755923.1| hypothetical protein ROSEINA2194_04372 [Roseburia inulinivorans DSM 16841] gi|225209539|gb|EEG91893.1| hypothetical protein ROSEINA2194_04372 [Roseburia inulinivorans DSM 16841] Length = 69 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 24/67 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R +SQ +L + +G T Q + E G I+ I FD Sbjct: 3 NRIKELRKANKLSQGELADIVGTTRQTITSIEVGKYTASLGLAYKIAHYFNLTIEEVFDF 62 Query: 77 SPTVCSD 83 S + Sbjct: 63 SDLESEE 69 >gi|172060084|ref|YP_001807736.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171992601|gb|ACB63520.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 219 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 4/90 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R + G + + L G++ + E+ A L ++ L + Sbjct: 14 INERIARRVRDLRTLRGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSL 73 Query: 71 SFFFDVSPTVCSDIS----SEENNVMDFIS 96 + F +++ D S Sbjct: 74 AGLFGGDRDDAPAQPLVRRAQQAEWRDPAS 103 >gi|115379785|ref|ZP_01466856.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|310820720|ref|YP_003953078.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115363203|gb|EAU62367.1| DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|309393792|gb|ADO71251.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length = 116 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 13/116 (11%) Query: 13 INVGKRIRLRRMIL--GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+RIR R +QE+L E I+ + E+G L ++ L + Sbjct: 6 KRIGQRIRELRTQRPERWTQEELAERAQISVSFLSMIERGERVAHVETLAALAGALGVSL 65 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 F + + + DF + + ++++ + R++ Sbjct: 66 GELFAGTEQSLAQTEDLLRPLSDF-----------ARARGLTARDVERLLGVARAM 110 >gi|110637230|ref|YP_677437.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110279911|gb|ABG58097.1| transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] Length = 79 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +G R+ R G SQ L Q ++K E G L I+ L + Sbjct: 14 VQKRIGLRVIELREHKGWSQSDLARACNKDRQAIEKIESGKVNPTIFSLYEIAIALGVSL 73 Query: 71 S 71 S Sbjct: 74 S 74 >gi|13476145|ref|NP_107715.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14026905|dbj|BAB53501.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 227 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 1 MVGN--KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M+ +K + D+ VG+R+R R+ +S +L G++ + + E+G++ + Sbjct: 28 MLDEAAEKPKDDADVRVGRRVRALRLERRLSLAELAAKAGVSIGALSQIERGMSSLRVKV 87 Query: 59 LQHISEVLESPISFFFDVSPTVCSDI 84 + ++ L+ S +D+ Sbjct: 88 IWPLAAALDIEPSALIADGNDAVNDL 113 >gi|323487530|ref|ZP_08092823.1| hypothetical protein HMPREF9474_04574 [Clostridium symbiosum WAL-14163] gi|323399131|gb|EGA91536.1| hypothetical protein HMPREF9474_04574 [Clostridium symbiosum WAL-14163] Length = 375 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 52/135 (38%), Gaps = 8/135 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++I +R G++Q L +G++ V K+E G + + L ++ I Sbjct: 6 IARQIIRKRRERGITQAALAAHMGVSKASVSKWETGQSYPDITLLPGLASYFNMSIDELM 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRY--------FIQIDDVKVRQKIIELVRSI 126 S + + E + + + + +L + V +R + L S Sbjct: 66 GCSMQMTEEEIQELFSRLAREFSQENAELLLEECRDVLYRYSSCFPVLLRMVLFYLNHSG 125 Query: 127 VSSEKKYRTIEEECM 141 + E++ + + EE + Sbjct: 126 MLPEERAKELLEEAL 140 >gi|319646362|ref|ZP_08000592.1| XRE family Transcriptional regulator [Bacillus sp. BT1B_CT2] gi|317392112|gb|EFV72909.1| XRE family Transcriptional regulator [Bacillus sp. BT1B_CT2] Length = 82 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 13 INVGKRIRLRRMILG--MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G+R+++ R +SQE L E LGI +YE G N G L I++ + + Sbjct: 1 MTLGERLKMLRNKQKPKLSQETLSEELGINRSTYARYETGDNDPGYKTLIKIADFYKVSL 60 Query: 71 SFFFDV 76 + Sbjct: 61 DYLIQG 66 >gi|289549623|ref|YP_003470527.1| Transcriptional regulator, PBSX family [Staphylococcus lugdunensis HKU09-01] gi|315659741|ref|ZP_07912600.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] gi|289179155|gb|ADC86400.1| Transcriptional regulator, PBSX family [Staphylococcus lugdunensis HKU09-01] gi|315495029|gb|EFU83365.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 63 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +I+ R +GMSQE L + + ++ Q + E +++ ++ + F Sbjct: 3 NKIKAYRKKIGMSQETLSKNVNVSRQTINAIENNKYDPTLMLAFKLAKQFDTTVDDLFS 61 >gi|302538385|ref|ZP_07290727.1| regulatory protein [Streptomyces sp. C] gi|302447280|gb|EFL19096.1| regulatory protein [Streptomyces sp. C] Length = 452 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 5/117 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ R G++Q +L E T V E G R + L+ ++ L + Sbjct: 6 EIGRRVQRLRAERGLTQRQLAE-PAYTPAYVSTLESGKVRPSETALRFLAGRLGTSYEEL 64 Query: 74 FDVSPTV-CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 P +++ + ++T + F ++ R ++L + Sbjct: 65 ATGRPAHLATELRLALTDAQRTLATGPAREAAAQFRRLLAEAER---LDLADERAEA 118 >gi|302530702|ref|ZP_07283044.1| transcriptional regulator [Streptomyces sp. AA4] gi|302439597|gb|EFL11413.1| transcriptional regulator [Streptomyces sp. AA4] Length = 187 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R+R R G++ L GI+ + + E G R L +S + Sbjct: 5 DEVLDAVGPRLRALRTRRGITLADLSAETGISESTLSRLENGQRRANLELLLPLSRAYDV 64 Query: 69 PISFF 73 PI Sbjct: 65 PIDDL 69 >gi|254489092|ref|ZP_05102296.1| transcriptional regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] gi|214042100|gb|EEB82739.1| transcriptional regulator, XRE family with Cupin sensor domain [Roseobacter sp. GAI101] Length = 204 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 3/105 (2%) Query: 2 VGNKKIPNPVDI--NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 + + P P D +G+ R R G+S +L E G++ + + E+ + L Sbjct: 1 MSDPDKPTPEDTPGAIGETFRQMRQNQGISLRELSEKSGVSVGTISQIERDLANPSMRVL 60 Query: 60 QHISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQL 103 I L P+ F D S T + + + + + L Sbjct: 61 TAIRRALNVPMQVMFGDDSGTTADSDADGDPPFLRRAAKRPRIDL 105 >gi|149919009|ref|ZP_01907494.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149820162|gb|EDM79581.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 125 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 8/121 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K+ +P G+ IR R G++QE L E G++ V+ E G L+ Sbjct: 1 MSHKQRSDPEARRFGRHIRALRSERGLTQELLAERSGLSADSVRSLENGKFSPSRGTLRK 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + L+ +S FF + T E +D + T +L R I VR+ I + Sbjct: 61 LCTGLDLQMSTFFLLYETGGRRGEHEL---LDLLRTRSPAEL-RALTAI----VRELIAQ 112 Query: 122 L 122 L Sbjct: 113 L 113 >gi|146297633|ref|YP_001181404.1| XRE family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411209|gb|ABP68213.1| transcriptional regulator, XRE family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 122 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 51/123 (41%), Gaps = 9/123 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++++ R G++QE++ + LG+ + YE G+ + + L+++S + +S+ Sbjct: 8 KKIGQKLQEARKKAGLTQEQVADYLGVNKTLISYYENGIREISIATLRNLSNLYGYTMSY 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F IS + + + F+ + ++ +++ EK+ Sbjct: 68 FLSDDEINEPTISFSFRADELKKEDLEVIAMANEFLINLEE---------MKQMLAQEKE 118 Query: 133 YRT 135 Sbjct: 119 VIK 121 >gi|325289311|ref|YP_004265492.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964712|gb|ADY55491.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 110 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 1/101 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D V RI R+ G+S+ ++ LG + + G + I + Sbjct: 3 DKFVRDRITQLRLHKGVSEYQMSYDLGHSRGYLYNISSGKSLPPLPEFFAICAYFGITPA 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 FFD + + + ++ D L + ++ D Sbjct: 63 QFFDDKQENPQ-LIQKAVEGLSNLNDSDVLMILGLINRLLD 102 >gi|325262674|ref|ZP_08129410.1| DNA-binding protein [Clostridium sp. D5] gi|324031768|gb|EGB93047.1| DNA-binding protein [Clostridium sp. D5] Length = 545 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I RR +G++Q++L E LG+T + V K+E G S L+ ++ VLE + Sbjct: 6 GQFIARRRKAIGLTQKELAEKLGVTNKAVSKWETGGGMPDVSVLETLAGVLEVSVDELLK 65 Query: 76 VS 77 Sbjct: 66 GE 67 >gi|307276073|ref|ZP_07557206.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306507403|gb|EFM76540.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|315575131|gb|EFU87322.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315582558|gb|EFU94749.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] Length = 73 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ +R LG +QE + +GI YE+G + ++++L+ P + FFD Sbjct: 8 LKKKRESLGYTQESFAKEIGIAKTTYSSYEQGYRNPTVQTAKKMAKILQVPWTIFFDEE 66 >gi|297160908|gb|ADI10620.1| putative DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 387 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLES 68 P + ++G R+R R G+SQ L G++ ++K E+G + ++ L Sbjct: 2 PEETHIGARLRKIRKRRGLSQRDLAVASGVSLSLIRKLEQGTLDDTRMETAHQLAVGLRV 61 Query: 69 PISFFFDVSPTVCSDISS 86 P S + +D ++ Sbjct: 62 PTSSLLERDDEESADDTA 79 >gi|295102584|emb|CBL00129.1| Helix-turn-helix [Faecalibacterium prausnitzii L2-6] Length = 305 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 59/134 (44%), Gaps = 6/134 (4%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G+ I+ RR+ LG++QE+L + + + + E G +R+ + + L P Sbjct: 3 NVFLGEYIKQRRLDLGLTQEQLCDGI-CEPMTLSRLENGKQTPSRNRINALLQRLGLPDD 61 Query: 72 FFFDVSPTVCSDISSEENNVMDFIST---PDGLQLNRYFIQIDDVKVR--QKIIELVRSI 126 +F + ++ + + ++ +T P+G + F ++ D + Q+ R + Sbjct: 62 RYFALLSKNELEMEALQKEIVACNATEKVPEGFEKLAQFEKLADPDDQIAQQFALRSRVL 121 Query: 127 VSSEKKYRTIEEEC 140 + T E+ Sbjct: 122 LGRLDGRYTPLEQI 135 >gi|312109712|ref|YP_003988028.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] gi|311214813|gb|ADP73417.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] Length = 148 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 4/97 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR++ R SQ+K+ E +GI+ Q+ +YE G + ++ + Sbjct: 4 LGKRLKYLREKFNYSQKKVAEAIGISNVQLSRYESGDRNPDPELIAAFADFYGVTTDYIL 63 Query: 75 DVSPTV----CSDISSEENNVMDFISTPDGLQLNRYF 107 + + + + +L + + Sbjct: 64 GRTDDPQGYAPETNIDNIKDTKELNTLIKINELIKKY 100 >gi|251777920|ref|ZP_04820840.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082235|gb|EES48125.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 376 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 3/109 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI+ R++ G+SQE+LG+ +G+T Q + EK + + L +SE L+ P+SFF+ Sbjct: 10 GQRIKQGRILRGLSQEQLGKKVGVTRQAISNCEKDNINLSTTNLLKLSETLDLPLSFFYR 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + SD + + R I I D ++ + + V+ Sbjct: 70 IPEEDNSDNIIFFRSKDIP---KKTKEQLREEINIFDKEIVKYFEKFVK 115 >gi|169824259|ref|YP_001691870.1| Cro/CI family transcriptional regulator [Finegoldia magna ATCC 29328] gi|167831064|dbj|BAG07980.1| putative transcriptional regulator Cro/CI family [Finegoldia magna ATCC 29328] Length = 179 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 42/89 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R+ LG++QE+L E +T + + E+ + L ++ L + ++ Sbjct: 1 MEIGDKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNYVLNALGTDMAT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 FF +V + E+ + +S + Sbjct: 61 FFADDLSVKEIFTKEDYQSSEDVSMKSSI 89 >gi|26991944|ref|NP_747369.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24987072|gb|AAN70833.1|AE016728_2 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] gi|313501243|gb|ADR62609.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 182 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVE 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF ++ P + I + + ++D ++L Sbjct: 61 FFSVELEPQSPTQIVYKAHELIDISDGAVTMKLV 94 >gi|325970790|ref|YP_004246981.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324026028|gb|ADY12787.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 91 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R+ M+QE+L E ++ Q+ E G +Q I L F Sbjct: 6 IGQAIKALRLAQNMTQEELIERADLSRSQLYYIESGKRTPRLPTMQSICSALSVSFLEF 64 >gi|313898251|ref|ZP_07831789.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957015|gb|EFR38645.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 357 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK I R G +QE L L ++ V K+E G + S L ++ + + I Sbjct: 1 MDIGKNIVRLRNEKGYTQEMLASLLHVSSAAVSKWEHGSSCPDISTLPILARIFDISIDE 60 Query: 73 FFDVSPTVCSD 83 + + + Sbjct: 61 LLNFEKNLSEE 71 >gi|313206573|ref|YP_004045750.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|312445889|gb|ADQ82244.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|315023431|gb|EFT36439.1| helix-turn-helix domain protein [Riemerella anatipestifer RA-YM] gi|325335979|gb|ADZ12253.1| Helix-turn-helix type 3 [Riemerella anatipestifer RA-GD] Length = 122 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 9/127 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G SQE + + L I+ + E +V RL I+E+LE+ I+ FF Sbjct: 4 IGVNIRRLRERKGFSQEYVAQELNISQASYARLENENTKVTVERLSKIAEILETDITEFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + ++ E + + I++ + QK+IE + + + Sbjct: 64 NENRLSIQTQNNYEGSYGNGYVQNLH---------IENKEATQKLIESYEARIKEKDDII 114 Query: 135 TIEEECM 141 + +E + Sbjct: 115 VLLKELV 121 >gi|307704145|ref|ZP_07641070.1| transcriptional regulator [Streptococcus mitis SK597] gi|307622303|gb|EFO01315.1| transcriptional regulator [Streptococcus mitis SK597] Length = 290 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 49/107 (45%), Gaps = 1/107 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ + R++ +R L +SQ++L + + Q+ + E+G G+ L +S+ L+ + Sbjct: 1 MDMLLATRLKNKRKELKLSQKELAKGI-CEQGQISRMEQGKYSPGSELLFQLSKRLKVSM 59 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++FF+ + + + + + Y +++ K + Sbjct: 60 NYFFEETEVSSLENIDKFKELSKKFLDEREYESLHYIYELEKSKRAR 106 >gi|307273981|ref|ZP_07555191.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0855] gi|306509289|gb|EFM78349.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0855] Length = 71 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R G SQ +L + + +T Q V ++ G +++ +SE+L PI+ F Sbjct: 5 SNLSRYRKEKGFSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKTLSEILSVPINELFSD 64 >gi|218132385|ref|ZP_03461189.1| hypothetical protein BACPEC_00244 [Bacteroides pectinophilus ATCC 43243] gi|217992723|gb|EEC58725.1| hypothetical protein BACPEC_00244 [Bacteroides pectinophilus ATCC 43243] Length = 121 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 37/88 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R + G++Q+++ + LGI V+K E+G + +E S I + Sbjct: 25 GKRLSELRKMKGLTQQQVADELGIDVDTVRKNEQGRRGLSIDTASMYAEYYHSTIDYITH 84 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQL 103 + ++++ + + L Sbjct: 85 GKESSNDEVTAMLAEYPEEVRNKAAKLL 112 >gi|197106394|ref|YP_002131771.1| transcriptional regulator,Cro/CI family [Phenylobacterium zucineum HLK1] gi|196479814|gb|ACG79342.1| transcriptional regulator,Cro/CI family [Phenylobacterium zucineum HLK1] Length = 86 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 26/68 (38%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D + R+++ R SQ L E LG++ Q V E G I+ V PI Sbjct: 19 DAAMKNRLKVLRAERDWSQGDLAERLGVSRQSVNAIETGKYDPSLPLAFRIARVFGLPIE 78 Query: 72 FFFDVSPT 79 F+ Sbjct: 79 AIFEDGGA 86 >gi|168205968|ref|ZP_02631973.1| LexA repressor [Clostridium perfringens E str. JGS1987] gi|170662549|gb|EDT15232.1| LexA repressor [Clostridium perfringens E str. JGS1987] Length = 365 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 2/128 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R +SQE + L I + YE+ + L +SEV+ I + Sbjct: 14 LKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSEPPIYTLVKMSEVMNCSIDELLGTTK 73 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV--RQKIIELVRSIVSSEKKYRTI 136 + S + + +L I+ + + +++ ++ + S+K+ + Sbjct: 74 EITSSTKEKFSYSELTEKIYYLNELIDKNIKTYEDLIMSKKRTERMLDELSMSKKRTERM 133 Query: 137 EEECMVEQ 144 +E ++ + Sbjct: 134 FDELLMSK 141 >gi|168183925|ref|ZP_02618589.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|237795812|ref|YP_002863364.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|182672917|gb|EDT84878.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|229263033|gb|ACQ54066.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 78 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +++ R LG++QE+LGE +G++ Q + E G I++V I F F Sbjct: 3 NKLKQFREDLGLTQEQLGELVGVSRQAINAIETGKFEPSIWLAYDIAKVFHGTIEEVFLF 62 Query: 75 DVSPTVCSDISS 86 + S S Sbjct: 63 EESERKSRAEKS 74 >gi|254974648|ref|ZP_05271120.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092038|ref|ZP_05321516.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255313774|ref|ZP_05355357.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516456|ref|ZP_05384132.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649554|ref|ZP_05396456.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260682721|ref|YP_003214006.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686319|ref|YP_003217452.1| putative transcriptional regulator [Clostridium difficile R20291] gi|306519681|ref|ZP_07406028.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|260208884|emb|CBA61852.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212335|emb|CBE03128.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 183 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 7/121 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + K PN VG+ +RL R +G+S +K + G++ + + E+G + S L IS Sbjct: 2 DNKFPN-----VGENLRLLRQEMGISLDKASKMTGVSKAMLGQIERGESSPTVSTLWKIS 56 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + + + I EE + ++L + + IIEL Sbjct: 57 SGFKINFTTLLNENTNTYEVIKKEEVEP--IVEQKGNMKLYPIYPFSPQRRFELFIIELE 114 Query: 124 R 124 Sbjct: 115 E 115 >gi|26988980|ref|NP_744405.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24983798|gb|AAN67869.1|AE016418_9 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 104 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 27/72 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R R + G++Q +L E G + + ++E + ++VL F Sbjct: 5 ALGIALRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDAIMAFAQVLGVKTKDF 64 Query: 74 FDVSPTVCSDIS 85 F + Sbjct: 65 FAEPDDEEEQRA 76 >gi|89894695|ref|YP_518182.1| hypothetical protein DSY1949 [Desulfitobacterium hafniense Y51] gi|89334143|dbj|BAE83738.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 218 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R MSQ L L ++ Q V K+E + +L +SEV + Sbjct: 11 MTLGEKIYELRTKNAMSQGDLANTLEVSRQSVSKWENNTSVPELDKLVKMSEVFSISLDE 70 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 T ++ ++ Sbjct: 71 LIRGEKTEEMQRETQSPDISAP 92 >gi|18310430|ref|NP_562364.1| transcriptional regulator [Clostridium perfringens str. 13] gi|18145110|dbj|BAB81154.1| probable transcriptional regulator [Clostridium perfringens str. 13] Length = 175 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 3/132 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ ++L IT Q+ E G + L++I+ L + + + Sbjct: 6 LGEKIKRRRKELNMTLKELAGE-RITPGQISLVESGRSNPSMDLLEYIAITLNTSVEYLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF--IQIDDVKVRQKIIELVRSIVSSEKK 132 + I + + D ++ F I I +++ + Sbjct: 65 ETEKIQAEKICLYYEQIAESAILNDDIKKGEKFIEYAIYYADKYDLIYRKAKNLALKAEM 124 Query: 133 YRTIEEECMVEQ 144 Y EE + +Q Sbjct: 125 YLKSEEYVLAQQ 136 >gi|330816861|ref|YP_004360566.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] gi|327369254|gb|AEA60610.1| XRE family transcriptional regulator [Burkholderia gladioli BSR3] Length = 207 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 37/95 (38%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + + G R+R R GM+ E+L E G++ + K E+G I++ L Sbjct: 21 ADELSEAFGARVRKLRAAAGMTLEQLSERSGVSRAMLSKVERGEKSPTIGIATRIAQSLR 80 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + ++ S + + + F +G + Sbjct: 81 TSLTELVGGSASKGATVLMRRAARPVFRDPENGFE 115 >gi|260892045|ref|YP_003238142.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] gi|260864186|gb|ACX51292.1| transcriptional regulator, XRE family [Ammonifex degensii KC4] Length = 118 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 31/74 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I G ++ R +G+ Q+ + +G+ V +E+GV + L +S++ + Sbjct: 2 IRFGDTLKQLRQRMGLRQDDVARMVGVERSTVANWERGVKQPSLETLVKLSQLFGVSLDE 61 Query: 73 FFDVSPTVCSDISS 86 V+ S S Sbjct: 62 LVGVTEVTTSSPLS 75 >gi|255523840|ref|ZP_05390804.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255512402|gb|EET88678.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 190 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 53/118 (44%), Gaps = 4/118 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK+I+ R ++ ++L ++ + + E+G+ V L +I++ L+ +S+F Sbjct: 5 VGKKIKELRTNKNLTLKELSTKTNLSIGFLSQLERGLTAVAIDSLNNIAKALDVNLSYFI 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + I + + + ++ +D++ + + L+ + +S K+ Sbjct: 65 NEANHNKKIILRSYEKEVFQVENNQFI----HYHLTNDIENKNLLPRLIEILPTSSKE 118 >gi|228912155|ref|ZP_04075870.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] gi|228942096|ref|ZP_04104636.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975025|ref|ZP_04135584.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981664|ref|ZP_04141959.1| Transcriptional regulator, XRE [Bacillus thuringiensis Bt407] gi|228777776|gb|EEM26048.1| Transcriptional regulator, XRE [Bacillus thuringiensis Bt407] gi|228784546|gb|EEM32566.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817430|gb|EEM63515.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228847492|gb|EEM92431.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] gi|324328858|gb|ADY24118.1| XRE family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942746|gb|AEA18642.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 109 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R L M Q +L + +G+ + + YE +++I+ V + Sbjct: 5 IGSRIKEVRKSLKMKQNELADAVGVNYTMISLYESNKREPSRETVENIARVTNVSADYIM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +S D + + D + + Q+ K R KII ++ + Sbjct: 65 GLSKHKTFDEETSKKITDDVE------DIMKRINQLPADK-RSKIINMINDL 109 >gi|229170243|ref|ZP_04297926.1| Transcriptional regulator, XRE [Bacillus cereus AH621] gi|228613239|gb|EEK70381.1| Transcriptional regulator, XRE [Bacillus cereus AH621] Length = 166 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 33/87 (37%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ +G RI+ R ++Q++L E +G++ + + YE L +++ Sbjct: 22 VNNVIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSA 81 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST 97 + + T + + D Sbjct: 82 DYLLGRAVTDETKKQLVPKDEKDIAKR 108 >gi|160937793|ref|ZP_02085152.1| hypothetical protein CLOBOL_02685 [Clostridium bolteae ATCC BAA-613] gi|158439232|gb|EDP16985.1| hypothetical protein CLOBOL_02685 [Clostridium bolteae ATCC BAA-613] Length = 199 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 37/77 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ RR + MSQE + + LGI+ Q V K+E G + + L ++ + E IS Sbjct: 1 MALSENIKARRTQIKMSQEYVADQLGISRQAVAKWEAGTSEPTSKNLSELASLFEMSISE 60 Query: 73 FFDVSPTVCSDISSEEN 89 D + E+ Sbjct: 61 LVDPQTYAEEQETQEQK 77 >gi|120406457|ref|YP_956286.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959275|gb|ABM16280.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 222 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ +RL R+ G++ + +GI+ + K E S L +++ + P+ Sbjct: 35 IEAAIGRNVRLLRLQQGLTVAETAARVGISKAMMSKIENAQTSCSLSTLALLAKGFDVPV 94 Query: 71 SFFFDVSPTVCSDI 84 + F + Sbjct: 95 TSLFRGADVERPAA 108 >gi|310658782|ref|YP_003936503.1| Xre family transcriptional regulator [Clostridium sticklandii DSM 519] gi|308825560|emb|CBH21598.1| Transcriptional regulator, XRE family [Clostridium sticklandii] Length = 179 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 37/86 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R++ ++QE+L +T + K E+ + + L I E L + + Sbjct: 1 MVIGEKIKRLRILNNLTQEELALRCDLTKGFISKLERDLTSPSIATLVDILEALGTDLKD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 FF+ S E+ + Sbjct: 61 FFNESSNNKIVFGKEDIYDAYYEHNK 86 >gi|206973030|ref|ZP_03233952.1| transcriptional regulator Xre [Bacillus cereus AH1134] gi|206731914|gb|EDZ49114.1| transcriptional regulator Xre [Bacillus cereus AH1134] Length = 108 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 4/103 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G IR R G++Q++L L ++ + YE+ + + L I++ F Sbjct: 5 GNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTDFLLG 64 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 F+V+ + + F + +L R++ + + Sbjct: 65 RDFNVTEDGNKIELDQWLKDIKFAPSQKREELKRFWKFLMQEE 107 >gi|219669136|ref|YP_002459571.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539396|gb|ACL21135.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 208 Score = 47.1 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 36/95 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I R MSQ L L ++ Q V K+E + +L +SEV + Sbjct: 1 MTLGEKIYELRTKNAMSQGDLANTLEVSRQSVSKWENNTSVPELDKLVKMSEVFSISLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 T ++ ++ + ++ F Sbjct: 61 LIRGEKTEKMQRETQSPDISAPPNGLPPRKIVGLF 95 >gi|325915811|ref|ZP_08178110.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325537932|gb|EGD09629.1| transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 462 Score = 46.7 bits (109), Expect = 9e-04, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 5/136 (3%) Query: 10 PVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 PV + +G R++ R G++Q +L L ++ + + E+ + + Q + L Sbjct: 7 PVLRHQLGLRLQRLRQRHGLTQAELARRLALSPSYLNQIERNQRPLTLAIQQRLKATLGD 66 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 P +D E + +P L+ + +V Q +++L R+ Sbjct: 67 LDGLLDVDDPAALADPLDESLRSLGHTLSPAELRALTG----NLPQVAQALLDLHRAHQR 122 Query: 129 SEKKYRTIEEECMVEQ 144 +++ +E + VE Sbjct: 123 LQERTAALEMQIGVEH 138 >gi|320201133|gb|EFW75716.1| putative transcription regulator [Escherichia coli EC4100B] Length = 150 Score = 46.7 bits (109), Expect = 9e-04, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 29/81 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 3 IQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPWQ 62 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + D D Sbjct: 63 LLASDSSKDDDPELLVPYAAD 83 >gi|315650286|ref|ZP_07903358.1| helix-turn-helix domain protein [Eubacterium saburreum DSM 3986] gi|315487397|gb|EFU77707.1| helix-turn-helix domain protein [Eubacterium saburreum DSM 3986] Length = 121 Score = 46.7 bits (109), Expect = 9e-04, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 13/125 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R LG++ E GE +G+ V + EKG N + + I + Sbjct: 2 GERVRELRKALGLTLEAFGEKVGVGKSAVSRLEKGTNNLTEQMILAICREFNVNEEWLRT 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + + E +L R + ++ + ++I + + + Sbjct: 62 GNGEMFIKLDRETE----------IARLTRDLLLEEEDSFKNRVIAV---LAKLTPEQWE 108 Query: 136 IEEEC 140 + E Sbjct: 109 VLSEI 113 >gi|313114704|ref|ZP_07800206.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622929|gb|EFQ06382.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 231 Score = 46.7 bits (109), Expect = 9e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+L R G++Q++ E LG++ + YEKG+ G + +++ + S Sbjct: 7 IKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLLGRSA 66 Query: 79 TVCSDISSEEN 89 + S E+ Sbjct: 67 ERNGMMLSAED 77 >gi|262274204|ref|ZP_06052016.1| transcriptional regulator [Grimontia hollisae CIP 101886] gi|262222014|gb|EEY73327.1| transcriptional regulator [Grimontia hollisae CIP 101886] Length = 210 Score = 46.7 bits (109), Expect = 9e-04, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 32/88 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ R G++ E+ + G+ + K E +Q ++ L I Sbjct: 29 LRLGERLKEIRTNNGLTLEEASKLTGLARSTLSKIENEQISPTFQAMQKLAAGLNIDIPQ 88 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG 100 F + + + + P G Sbjct: 89 LFAPPKQRQATGRRDITRAGEGKNRPTG 116 >gi|237797760|ref|ZP_04586221.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020610|gb|EGI00667.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 182 Score = 46.7 bits (109), Expect = 9e-04, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVE 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FF P + + + + ++D ++L Sbjct: 61 FFSEETVPENAAQVVYKASELIDISDGAVTMKLV 94 >gi|228982712|ref|ZP_04142971.1| Prophage LambdaBa02, repressor protein [Bacillus thuringiensis Bt407] gi|228776895|gb|EEM25203.1| Prophage LambdaBa02, repressor protein [Bacillus thuringiensis Bt407] Length = 133 Score = 46.7 bits (109), Expect = 9e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 31/80 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+RL R G++QE+L + + YE G + L + +VL F Sbjct: 31 KRLRLARKWSGLTQEELAIKVNTKKTTISNYETGYSTPSIEMLDLLCDVLNVSSDFLLGR 90 Query: 77 SPTVCSDISSEENNVMDFIS 96 + S + + ++ Sbjct: 91 TDEPSLSSSQVNHINQELLT 110 >gi|170016383|ref|YP_001727302.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803240|gb|ACA81858.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 258 Score = 46.7 bits (109), Expect = 9e-04, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 28/73 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R ++Q E + ++ Q V +E+G++ + L I+ + P++ Sbjct: 10 LQNIRTKQNLTQVDFAEKIFVSRQTVSNWERGISIPPVTALSIIANTFDVPLTQLLSALD 69 Query: 79 TVCSDISSEENNV 91 ++ Sbjct: 70 GEQANREHAAERQ 82 >gi|148358351|ref|YP_001249558.1| hypothetical protein LPC_0214 [Legionella pneumophila str. Corby] gi|148280124|gb|ABQ54212.1| hypothetical protein LPC_0214 [Legionella pneumophila str. Corby] Length = 86 Score = 46.7 bits (109), Expect = 9e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +P I +GK IR R G SQE + + + E+G + L I+ + Sbjct: 7 KEKHPNLIKIGKLIRDTRKEKGYSQEDFASQAQLGRTYMGRIERGEQNMTIQTLIQIALI 66 Query: 66 LESPISFF 73 L ++ Sbjct: 67 LGVEVATL 74 >gi|90412517|ref|ZP_01220520.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90326554|gb|EAS42960.1| hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 212 Score = 46.7 bits (109), Expect = 9e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 38/88 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ I G+SQ++LGE LG+ + + G + L+ I+E L + I + Sbjct: 5 ERIKQLAKIQGISQKQLGESLGLQQGTMSRKLSGKYGIEVRELERIAETLNTSIGYLLTG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN 104 + ++ + ST + + Sbjct: 65 QIDTGTQATTAITHESSQGSTCTYIPII 92 >gi|54310636|ref|YP_131656.1| putative transcriptional regulator [Photobacterium profundum SS9] gi|46915079|emb|CAG21854.1| Hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 125 Score = 46.7 bits (109), Expect = 9e-04, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 10/123 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ R G++Q + + L + Q E G L ISE+ E P+++F Sbjct: 8 IAARIKEAREWKGLTQVHMAQQLQVARQTYLDLETGKTEPKVRLLSEISEITERPLTWFV 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + S + + +L +YF ++ R I++ ++ +Y Sbjct: 68 YGDEGIEILESEYKEEID---------RLLQYFSRLPHSA-RNIILQQSINLAGFMAEYT 117 Query: 135 TIE 137 Sbjct: 118 KAL 120 >gi|304406701|ref|ZP_07388356.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304344234|gb|EFM10073.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 121 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 32/78 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R M+Q+ + + + + YE ++ ++++ + I + F Sbjct: 4 GERLKELREQRNMTQQDVAIAVNKSRTDIAGYETKGTSPNIETVRRLADLFKVSIDYMFG 63 Query: 76 VSPTVCSDISSEENNVMD 93 + + EE+ + Sbjct: 64 RTNDPYQLFTREEDMSPE 81 >gi|302380564|ref|ZP_07269029.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|303234052|ref|ZP_07320701.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302311507|gb|EFK93523.1| helix-turn-helix protein [Finegoldia magna ACS-171-V-Col3] gi|302494977|gb|EFL54734.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 179 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 42/89 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R+ LG++QE+L E +T + + E+ + L ++ L + ++ Sbjct: 1 MEIGDKIRSLRLKLGLTQEELAERSDLTKGFISQLERDLTSPSVDSLNYVLNALGTDMAT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 FF +V + E+ + +S + Sbjct: 61 FFADDLSVKEIFTKEDYQSSEDVSMKSSI 89 >gi|288870629|ref|ZP_06114758.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288866515|gb|EFC98813.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 127 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/117 (11%), Positives = 44/117 (37%), Gaps = 8/117 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R G +Q L + +G++ + E + ++ I L S+ Sbjct: 7 IGARLKQARSSKGYTQNSLADAIGVSRGVITNIEHEKSEPQMLVIRGICYELGINSSWLL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + S+ +E + L + + + + +++++++ ++ Sbjct: 67 QGEGPMESEKDAER--------SAQLLAEIYHLSTLLSKEEQDYVLDMIKTFQKHKE 115 >gi|260102601|ref|ZP_05752838.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260083584|gb|EEW67704.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 243 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 50/119 (42%), Gaps = 1/119 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R+ R + G++QE++ + I+ Q + EK N + AS L I + + Sbjct: 1 MKIGDRLHQVRNLHGLTQEQMAAGI-ISKSQYWRIEKESNAIRASSLIKILNQNKISVLT 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF + + + + + D +L Q + ++++ + L+ + + Sbjct: 60 FFKDADDSGINRRELQYQITNAFFARDYKRLEEIKKQSTNSQMKRLLNWLLAELRGESQ 118 >gi|223986398|ref|ZP_03636404.1| hypothetical protein HOLDEFILI_03716 [Holdemania filiformis DSM 12042] gi|223961640|gb|EEF66146.1| hypothetical protein HOLDEFILI_03716 [Holdemania filiformis DSM 12042] Length = 358 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 36/78 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G I L R G +Q +L E LGIT + V K+E G + + L +SE L +S Sbjct: 4 MKIGGFIALCRKEKGWTQSQLAEILGITDKAVSKWETGKSLPDYALLTPLSEALGITLSE 63 Query: 73 FFDVSPTVCSDISSEENN 90 F D+ + + Sbjct: 64 LFSGERIRAEDLMEKTDQ 81 >gi|160221335|gb|ABX11276.1| XRE-like transcriptional regulator [Burkholderia sp. MBA4] Length = 189 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 51/132 (38%), Gaps = 9/132 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R L + ++ GI+ + + E+G+ + L I+ L + + Sbjct: 11 LALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIANALGVKVQY 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F D S + E F + F ++ ++ +++ ++ + +K+ Sbjct: 71 FVDTPSEERSVCRANELKFFGFADS------ANLFARMTNLSGGRQLEAILVRMPPGQKR 124 Query: 133 YR---TIEEECM 141 EE + Sbjct: 125 SEVTTHAGEEFI 136 >gi|154504923|ref|ZP_02041661.1| hypothetical protein RUMGNA_02433 [Ruminococcus gnavus ATCC 29149] gi|153794806|gb|EDN77226.1| hypothetical protein RUMGNA_02433 [Ruminococcus gnavus ATCC 29149] Length = 120 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 41/105 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI++ R+ G++QE + + + IT + E G +V L I+ L + Sbjct: 6 KAIGQRIKIARIKKGVTQETVADLIDITPAHMSNVETGKTKVSLPTLIAIANALSVSVDT 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + +E + ++ ++ + R+ Sbjct: 66 LLCDNVITSKIVFEKEAKDILSDCDEYEVRFLVDLMKSAKIAFRK 110 >gi|153811810|ref|ZP_01964478.1| hypothetical protein RUMOBE_02203 [Ruminococcus obeum ATCC 29174] gi|149832213|gb|EDM87298.1| hypothetical protein RUMOBE_02203 [Ruminococcus obeum ATCC 29174] Length = 209 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R++ RR+ L ++Q + E +G+T + +YE G + +SE L + + Sbjct: 10 IGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ + + QL + +D + ++ +++ Sbjct: 70 KGETDEYETDITDKRELQIRDAMGDILEQLPLALTKEEDAFSKDLLLLMLKQ 121 >gi|78224438|ref|YP_386185.1| XRE family transcriptional regulator [Geobacter metallireducens GS-15] gi|78195693|gb|ABB33460.1| transcriptional regulator, XRE family [Geobacter metallireducens GS-15] Length = 187 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++ + + G + + + E + L I++ + IS FF Sbjct: 6 IGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIAKFFDVKISLFF 65 Query: 75 DVSPTV 80 Sbjct: 66 SEDEEE 71 >gi|56416260|ref|YP_153335.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197365183|ref|YP_002144820.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|11992069|gb|AAG42426.1|AF306456_3 regulatory protein SptAIC [Salmonella enterica subsp. enterica serovar Paratyphi A] gi|22135357|gb|AAM93162.1|AF508974_2 regulatory protein SbaIC [Salmonella enterica] gi|56130517|gb|AAV80023.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096660|emb|CAR62275.1| subunit S of type I restriction-modification system [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 78 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 27/74 (36%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K P+ + IR R G+SQE L + G+ + E+ + + Sbjct: 1 MERKINPSRARVIFAHNIRKLRERQGLSQEALADLAGLHRTYIGSVERCERNISIDNIDR 60 Query: 62 ISEVLESPISFFFD 75 I+ L S + Sbjct: 61 IASALGVSPSSLLE 74 >gi|325126457|gb|ADY85787.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 119 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 29/73 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK +R R GMSQ++L LG++ Q + +E G + I+ + + Sbjct: 5 MIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVSRNSI 64 Query: 74 FDVSPTVCSDISS 86 P + Sbjct: 65 LAGLPVEMLEQED 77 >gi|312887464|ref|ZP_07747063.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311300104|gb|EFQ77174.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 262 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 21/69 (30%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR R+ SQ + L I+ + E G L I+ + Sbjct: 8 KKIGERIRSVRLERHYSQAFVASILNISRSNYSQIEIGNQFPSFESLSKIASYYSKSYEW 67 Query: 73 FFDVSPTVC 81 Sbjct: 68 LLHGQEADP 76 >gi|312883075|ref|ZP_07742806.1| hypothetical protein VIBC2010_07299 [Vibrio caribbenthicus ATCC BAA-2122] gi|309369235|gb|EFP96756.1| hypothetical protein VIBC2010_07299 [Vibrio caribbenthicus ATCC BAA-2122] Length = 506 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 7/76 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G L+ I++V Sbjct: 13 FLGTKIRNLRKRNHLTMEDLSARCIRVNPENAPSVSYLSMIERGKRVPSIDMLEVIADVF 72 Query: 67 ESPISFFFDVSPTVCS 82 + +F D P Sbjct: 73 QKEPEWFLDDEPEQAD 88 >gi|294499832|ref|YP_003563532.1| HTH-type transcriptional regulator AnsR [Bacillus megaterium QM B1551] gi|294349769|gb|ADE70098.1| HTH-type transcriptional regulator ansR (Ans operon repressor) [Bacillus megaterium QM B1551] Length = 118 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 10/118 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 R+ R S + + L I YE G R L I+E+ ++ + Sbjct: 3 SRLAQLRKEKKWSLQYTADQLEIAKSTYAGYESGYRRPSLEALVTIAELFDTSTDYLLGK 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + P SD E + T DG +L + Q++ +R+ EK+ Sbjct: 63 EKEPHSLSDAPIELTSPQTHTITVDGAEL--------SQEEIQQLTAFIRAKRQIEKE 112 >gi|300024625|ref|YP_003757236.1| XRE family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526446|gb|ADJ24915.1| transcriptional regulator, XRE family [Hyphomicrobium denitrificans ATCC 51888] Length = 217 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 30/74 (40%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ +G ++R R G++ +L I+ + K E G S LQ ++ L Sbjct: 30 HTLEQAIGHQVRHHRKQAGLTVAELAVAAQISPGMLSKIENGQISPSLSTLQMLAAALNV 89 Query: 69 PISFFFDVSPTVCS 82 P++ F Sbjct: 90 PLTVLFSSFEQRRD 103 >gi|330876473|gb|EGH10622.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 182 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVE 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FF P + + + + ++D ++L Sbjct: 61 FFSEETVPENSAQVVYKASELIDISDGAVTMKLV 94 >gi|325529272|gb|EGD06223.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 183 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 36/96 (37%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + V +R+R R +SQ +L + G+T + E+G L+ + E + + Sbjct: 1 MSTEVAERLRFVRNKHALSQRELAKRAGVTNGTISLIEQGRVSPSVGSLKKLLECIPMSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + FF + S + + + + L Sbjct: 61 AEFFTFELVESRTVVSRRDEMPNLGNDALAFHLVGA 96 >gi|313902539|ref|ZP_07835940.1| transcriptional regulator, XRE family [Thermaerobacter subterraneus DSM 13965] gi|313467225|gb|EFR62738.1| transcriptional regulator, XRE family [Thermaerobacter subterraneus DSM 13965] Length = 288 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 7/119 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+RIRL R G+S + L I+ + E+GV + ++ L+ + + Sbjct: 6 VAVGQRIRLARQAAGLSVKDLARRAHISPSHLSDIERGVKHPSLAVAVTLAAALDRSLDW 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + D + RY D R+ +++L+ + + + Sbjct: 66 LVTGRDPLPGPLDLRSLL-------RDPTRPLRYQGLPLDDAAREHLVDLLDAALGLAR 117 >gi|306833435|ref|ZP_07466562.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424205|gb|EFM27344.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 202 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G+RI++ R + MSQ++ L I + YE N L +I++ + Sbjct: 3 NVTLGERIQVLRKNMKMSQKEFAVFLEIPQPSLSAYENNRNSPTIEVLINIAKKCHISLD 62 Query: 72 FF 73 + Sbjct: 63 WL 64 >gi|295110847|emb|CBL24800.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 255 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 10/133 (7%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R GMSQ++L E + ++ Q V ++E G L+ +S+V + I+ Sbjct: 7 ILELRTQKGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVFDVSINTLLGSPR 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV------KVRQKIIEL-VRSIVSS-- 129 + D I N + + +IE+ V+++VS Sbjct: 67 KLICQCCGMPLEDDDIIGHNHDGSFNEDYCKWCYADGTYTYNDMDDLIEVCVKNMVSENF 126 Query: 130 -EKKYRTIEEECM 141 E++ R+ +E + Sbjct: 127 TEEQARSYMKELI 139 >gi|294084784|ref|YP_003551542.1| transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292664357|gb|ADE39458.1| transcriptional regulator, putative [Candidatus Puniceispirillum marinum IMCC1322] Length = 468 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 44/128 (34%), Gaps = 1/128 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R G +Q ++ E LGI+ V EK + L +S+ Sbjct: 5 FIGPRLRQLRRDSGQTQAQMAEKLGISPAYVNLLEKNQRSLSVQVLMALSDEYNVDWRDV 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 T F TP L R I ++ I+L S +S +K Sbjct: 65 VLEKNTTVLSDLRNILQDPLFTGTPPDLDELRSAIDHA-PRLIDNFIKLYHSHRTSMEKI 123 Query: 134 RTIEEECM 141 + E M Sbjct: 124 MQLGSERM 131 >gi|271966030|ref|YP_003340226.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509205|gb|ACZ87483.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 197 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 6/111 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R+R R G++ L G++ + + E G R L ++ + Sbjct: 2 DEVLDAVGPRLRALRRHRGITLADLAATTGVSESTLSRLESGQRRATLELLLPLARTYDV 61 Query: 69 PISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 P+ P + +S G + F I + Sbjct: 62 PLDDLVGAPRTGDPRIHLKPILRFGMTFVPLSRRPGG--VQAFKMIIPAQP 110 >gi|240948773|ref|ZP_04753145.1| phage repressor [Actinobacillus minor NM305] gi|240296989|gb|EER47567.1| phage repressor [Actinobacillus minor NM305] Length = 218 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR RR L ++Q+ L L ++ + ++E + A + +S VL+ IS+ Sbjct: 6 LGDRIRNRRKELKLTQKDLATALKGVSHVAISQWESNTTKPNAENILDLSTVLQCEISWL 65 Query: 74 FDVSPTV 80 + Sbjct: 66 LRGNGES 72 >gi|229170504|ref|ZP_04298155.1| transcriptional regulator, XRE [Bacillus cereus AH621] gi|228612974|gb|EEK70148.1| transcriptional regulator, XRE [Bacillus cereus AH621] Length = 108 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 4/103 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G IR R G++Q++L L ++ + YE+ + + L I++ F Sbjct: 5 GNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTDFLLG 64 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 F+V+ + + F + +L R++ + K Sbjct: 65 RDFNVTEDGNKIELDQWLKDIKFAPSQKREELKRFWKFLMQEK 107 >gi|254465972|ref|ZP_05079383.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206686880|gb|EDZ47362.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 432 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 13/134 (9%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR+ILG+ Q +L GI+ + E R+G L I+ VL S Sbjct: 4 DTLTGSRIRERRLILGLRQAELARKAGISASYLNLIEHNRRRIGGKLLVGIAGVLGVEPS 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR-----QKIIELVRSI 126 + + E ++D+ R + + R I Sbjct: 64 MLSEGAEAALISTLREAAADSGVP--------VAELDRVDEFAGRFPGWAEVLASGHRRI 115 Query: 127 VSSEKKYRTIEEEC 140 + E+ T+ + Sbjct: 116 ATLERTVETLSDRL 129 >gi|196042506|ref|ZP_03109747.1| transcriptional regulator [Bacillus cereus NVH0597-99] gi|196026663|gb|EDX65329.1| transcriptional regulator [Bacillus cereus NVH0597-99] Length = 115 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I+ R ++QE+L E G++ Q++ +E + L+ ++ + Sbjct: 5 VGQNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTDALL 64 Query: 75 DVSPTVCSDIS 85 + + Sbjct: 65 NFEDRKEDALL 75 >gi|186472983|ref|YP_001860325.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184195315|gb|ACC73279.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 204 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 29/89 (32%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 27 VGEQIQRLRNERKMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 86 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 S + + QL Sbjct: 87 APQKAPDPIAVSGPHEIPTLNGHEARYQL 115 >gi|331265721|ref|YP_004325351.1| transcriptional regulator, putative [Streptococcus oralis Uo5] gi|326682393|emb|CBZ00010.1| transcriptional regulator, putative [Streptococcus oralis Uo5] Length = 228 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 53/126 (42%), Gaps = 28/126 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + +L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEGLGISFQAYSAWERGIKEPSKEKVAQLENILKVAKGYF--- 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE--KKYR 134 +++ R + + + + K++ R++ E +K Sbjct: 62 ----------------------TQIEIVRLYNSLSK-QGKDKVVLYARNLAQEEQTQKVT 98 Query: 135 TIEEEC 140 T+ E Sbjct: 99 TMPERL 104 >gi|310825965|ref|YP_003958322.1| hypothetical protein ELI_0340 [Eubacterium limosum KIST612] gi|308737699|gb|ADO35359.1| hypothetical protein ELI_0340 [Eubacterium limosum KIST612] Length = 150 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 45/113 (39%), Gaps = 4/113 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ + R + +QE++ +G++ Q V K+E G + ++E+ + Sbjct: 4 HLSMNLTALRKMNQYTQEEVASRIGVSRQAVAKWENGESAPDVINCNALAEMYNVSLDDL 63 Query: 74 FDVSPTVCSDISSEENNVMDF----ISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + ++ + F + + + + +I D+K +++ L Sbjct: 64 VNYNEKEKDGLAIPPKDKHMFGCVSVGERGQIVIPKKAREIFDIKPGDRLMVL 116 >gi|301382555|ref|ZP_07230973.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302063078|ref|ZP_07254619.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40] Length = 182 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVE 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FF P + + + + ++D ++L Sbjct: 61 FFSEETVPENSAQVVYKASELIDISDGAVTMKLV 94 >gi|300118308|ref|ZP_07056055.1| transcriptional regulator [Bacillus cereus SJ1] gi|298724277|gb|EFI64972.1| transcriptional regulator [Bacillus cereus SJ1] Length = 373 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIYKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP--------DGLQLNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + ++ + + + ++ ++ + Sbjct: 64 LICYTPQMGQEDIKNLYHRLAEAFSEEPFDEVMMECREIIKKYYSCFPLLLQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K I EE M Sbjct: 124 HMLTGDTDKRIEILEEAM 141 >gi|295705639|ref|YP_003598714.1| DNA-binding protein [Bacillus megaterium DSM 319] gi|294803298|gb|ADF40364.1| DNA-binding protein [Bacillus megaterium DSM 319] Length = 66 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R MSQ++L + G++ Q + E + ++E L + + F Sbjct: 4 NRIKELRKSKKMSQDELAKVCGVSRQTINAIENNKYDPSLTLAFQLAEELGATVDELF 61 >gi|259090355|pdb|3IVP|A Chain A, The Structure Of A Possible Transposon-Related Dna-Binding Protein From Clostridium Difficile 630. gi|259090356|pdb|3IVP|B Chain B, The Structure Of A Possible Transposon-Related Dna-Binding Protein From Clostridium Difficile 630. gi|259090357|pdb|3IVP|C Chain C, The Structure Of A Possible Transposon-Related Dna-Binding Protein From Clostridium Difficile 630. gi|259090358|pdb|3IVP|D Chain D, The Structure Of A Possible Transposon-Related Dna-Binding Protein From Clostridium Difficile 630 Length = 126 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 3/101 (2%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D +G I+ R G+++E++G + I + + E L + Sbjct: 2 RKKEDKYDFRALGLAIKEARKKQGLTREQVGAXIEIDPRYLTNIENKGQHPSLQVLYDLV 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 +L + FF P S++ + + I L Sbjct: 62 SLLNVSVDEFF--LPASSQVKSTKRRQLENKIDNFTDADLV 100 >gi|260868457|ref|YP_003234859.1| putative transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|257764813|dbj|BAI36308.1| predicted transcriptional regulator [Escherichia coli O111:H- str. 11128] Length = 233 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 26/69 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R LG+++ L + + +E G+ V A + ++ L + + Sbjct: 163 IGARIKSARTKLGLTESDLARMIHTYSDPINDWECGICEVPADHIVPLASALNCDLMWLL 222 Query: 75 DVSPTVCSD 83 Sbjct: 223 TGKSEAKEQ 231 Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 2/101 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR +R G++ +L L + + + ++E G S L ++ VL Sbjct: 87 IRTKREACGLTTTELARLLDLDEEIILQWESGEFEPTISMLIPLANVLGCDPLSLLSEKN 146 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + + + + I ++ R + + + + + I Sbjct: 147 SESAIRVNTTEVHAESIGAR--IKSARTKLGLTESDLARMI 185 >gi|302529249|ref|ZP_07281591.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4] gi|302438144|gb|EFL09960.1| helix-turn-helix domain-containing protein [Streptomyces sp. AA4] Length = 79 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R G+S+ +L + LG+ +Q + E+G I+E E + F Sbjct: 7 NRIAVLRAERGISRRQLADALGVHYQTIGYLERGEYSPSLYLALRIAEFFEVAVEVLFST 66 Query: 77 SP 78 +P Sbjct: 67 AP 68 >gi|239502014|ref|ZP_04661324.1| hypothetical protein AbauAB_06835 [Acinetobacter baumannii AB900] Length = 183 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V +VG IR R +SQ+ L + G++ + + E G + ++L I+ VL Sbjct: 5 SSVLQHVGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 64 Query: 69 P 69 Sbjct: 65 D 65 >gi|184159752|ref|YP_001848091.1| transcriptional regulator [Acinetobacter baumannii ACICU] gi|183211346|gb|ACC58744.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU] gi|322509665|gb|ADX05119.1| Putative HTH-type transcriptional regulator [Acinetobacter baumannii 1656-2] Length = 183 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V +VG IR R +SQ+ L + G++ + + E G + ++L I+ VL Sbjct: 5 SSVLQHVGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 64 Query: 69 P 69 Sbjct: 65 D 65 >gi|126643247|ref|YP_001086231.1| hypothetical protein A1S_3239 [Acinetobacter baumannii ATCC 17978] gi|332874254|ref|ZP_08442174.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] gi|126389131|gb|ABO13629.1| hypothetical protein A1S_3239 [Acinetobacter baumannii ATCC 17978] gi|323519685|gb|ADX94066.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332737538|gb|EGJ68445.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6014059] Length = 183 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V +VG IR R +SQ+ L + G++ + + E G + ++L I+ VL Sbjct: 5 SSVLQHVGTNIRSLRDERSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 64 Query: 69 P 69 Sbjct: 65 D 65 >gi|89072606|ref|ZP_01159178.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34] gi|89051710|gb|EAR57163.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34] Length = 213 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 9/127 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ + G+SQ++LGE L + + + G + L I++ L + I + Sbjct: 5 ERIKRLAKVQGISQKQLGEALDLQQGTMSRKLSGKYGIEVRELDKIADTLNTSIGYILTG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN--RYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + ++ + +D +T + + + F +D + I + R+I ++ Sbjct: 65 QVDTGTQATTTISTELDSAATCTYIPVIHRKDFSAYNDGSSVEVISK--RAIPQHLER-- 120 Query: 135 TIEEECM 141 EEC+ Sbjct: 121 ---EECL 124 >gi|332800291|ref|YP_004461790.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332698026|gb|AEE92483.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 103 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 36/90 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R LG+S +L G++ + + E G + L+ I L + FF Sbjct: 8 IGKRIRQLRESLGLSNRQLAIKAGLSQPVMNRIENGNRKADIETLEKICYALGITLIDFF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + S E +ST LN Sbjct: 68 SIDEEEMSPEYLELLKNAKKLSTEQLKILN 97 >gi|323693691|ref|ZP_08107890.1| hypothetical protein HMPREF9475_02753 [Clostridium symbiosum WAL-14673] gi|323502305|gb|EGB18168.1| hypothetical protein HMPREF9475_02753 [Clostridium symbiosum WAL-14673] Length = 112 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 33/64 (51%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V ++G+ +++ R M+QE + E +G++ Q V K+E G + S L ++++ + Sbjct: 45 VRKSLGEALKVHRTQCKMTQEFVAETIGVSRQAVSKWENGTSDPSTSNLFALAKLYGISV 104 Query: 71 SFFF 74 Sbjct: 105 EELL 108 >gi|313667112|gb|ADR73004.1| C.BspHIP [Bacillus sp. H(2010)] Length = 71 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N ++G +I++ R G+SQE L + IT + + E G +++ ISE L Sbjct: 1 MDNYFLESLGSKIKILRKSRGVSQEDLAKQSEITRTYLTQIENGKVNPSIGKIKKISENL 60 Query: 67 ESPISFFFDV 76 + F Sbjct: 61 NISLCEMFKD 70 >gi|310778575|ref|YP_003966908.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] gi|309747898|gb|ADO82560.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] Length = 190 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK ++ R +S ++ G++ + + E+G + S L I+ L+ P S F Sbjct: 8 IGKNLKEIRKKQNLSLDETSRLTGVSKPMLGQIERGQSNPTVSTLWKIATGLKVPFSEFM 67 >gi|304405221|ref|ZP_07386881.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304346100|gb|EFM11934.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 127 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 9/121 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G RI R G +QE+ LGI+ + YEK L +++ I F Sbjct: 1 MNIGTRIAHLREQRGWTQEQTSHSLGISRAALSHYEKNRREPDTETLTKFADLFNVTIDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD----GLQLNRYFIQIDD-----VKVRQKIIELV 123 + + + ++ L + F D ++ I + Sbjct: 61 LVGRTNKSEQVLDPQVREFVEQTEQDPLELSDEDLLKKFALTIDGMELTPDEAKRFIAFI 120 Query: 124 R 124 R Sbjct: 121 R 121 >gi|224542029|ref|ZP_03682568.1| hypothetical protein CATMIT_01202 [Catenibacterium mitsuokai DSM 15897] gi|224525086|gb|EEF94191.1| hypothetical protein CATMIT_01202 [Catenibacterium mitsuokai DSM 15897] Length = 101 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 35/93 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R+ +G SQE++ + + KYE G L + E+ + ++ Sbjct: 2 GERLRKARLKMGYSQEEVARRIDTHRTTIGKYENGECEPSIKVLAKLIEIYCTDANYILY 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 ++S N M + L + Sbjct: 62 GKDMKVMNVSRVPENCMRDVYMLISEYLIDDYA 94 >gi|220920176|ref|YP_002495477.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219944782|gb|ACL55174.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 193 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 35/89 (39%), Gaps = 3/89 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D + R+R R G++ E L + G++ + E+ + A+ L+ +S L Sbjct: 6 SDLDARLAARLRGLRTAQGLTLEALAQRCGVSRSMISLVERAESSPTATVLERLSAGLGV 65 Query: 69 PISFFFD---VSPTVCSDISSEENNVMDF 94 ++ F +++ D Sbjct: 66 SLAALFSPEHREDASPLSRRADQRCWRDP 94 >gi|182440719|ref|YP_001828438.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469235|dbj|BAG23755.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 205 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 34/83 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D V KRIR R+ G S E+L ++ + + E G R+ +L ++ L++ + Sbjct: 10 LDSLVRKRIRALRVAQGWSLEELAARAKVSQSTLSRIENGRRRLALDQLVTLARALDTSL 69 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + + + + Sbjct: 70 DQLVETASDDVVSNPTVDGAHGQ 92 >gi|291560963|emb|CBL39763.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 143 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 1/92 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + VG+RI+L R GMSQ + ++ Q + KYE + + + +++ ++++ + Sbjct: 1 MTVGERIQLLRKKTGMSQIDFATKINVSKQTLYKYENNLITNIPSDKIEAVADLCHVSPA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + + I+ L Sbjct: 61 YLMGWEEPEPQSSTILNKKDEKDIAKRLEQTL 92 >gi|269976760|ref|ZP_06183735.1| transcriptional regulator [Mobiluncus mulieris 28-1] gi|306818115|ref|ZP_07451846.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|269934957|gb|EEZ91516.1| transcriptional regulator [Mobiluncus mulieris 28-1] gi|304649079|gb|EFM46373.1| XRE family transcriptional regulator [Mobiluncus mulieris ATCC 35239] Length = 65 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 23/63 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R G SQEKL E LG++ Q V EKG I++ I F Sbjct: 3 NNLVTLRKQAGWSQEKLAELLGVSRQTVISIEKGRFDPSLPLAFTIAKTFNCKIEDIFTP 62 Query: 77 SPT 79 Sbjct: 63 DDA 65 >gi|168209872|ref|ZP_02635497.1| transcriptional regulator [Clostridium perfringens B str. ATCC 3626] gi|170712005|gb|EDT24187.1| transcriptional regulator [Clostridium perfringens B str. ATCC 3626] Length = 141 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ R +SQE+L + L I+ Q + K+E G L + ++ + Sbjct: 5 NKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIDNLILLRKIFGVSLDEL 61 >gi|325288703|ref|YP_004264884.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|325290739|ref|YP_004266920.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|325291076|ref|YP_004267257.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|325291248|ref|YP_004267429.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964104|gb|ADY54883.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966140|gb|ADY56919.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966477|gb|ADY57256.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324966649|gb|ADY57428.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 144 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 2/122 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI R L Q L G++ + +Y G L I+ L + + Sbjct: 7 VGERIAARLAELNQIQADLCRATGMSNNAISQYVTGKRTPDTLSLYKIASSLGVSMEWIL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 ++ E + + T L F + D + ++ + + + S K Sbjct: 67 TGENKQGRVNTTNERAGLMEL-TKKEADLIAMFRAL-DDRDKEYVNSTIEMLYSKAVKKG 124 Query: 135 TI 136 T+ Sbjct: 125 TL 126 >gi|315658589|ref|ZP_07911460.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] gi|315496378|gb|EFU84702.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 179 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 37/81 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ RM+ ++QE+L E +T + + E +I EVL + S Sbjct: 1 MDIGMKLKNLRMLKNLTQEELAERTDLTKGYISQIESQHASPSMETFLNILEVLGTRPSD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF ++E+ + D Sbjct: 61 FFQEKTKEKVLYTAEDQTIYD 81 >gi|300704470|ref|YP_003746073.1| transcriptional regulator protein [Ralstonia solanacearum CFBP2957] gi|299072134|emb|CBJ43466.1| putative transcription regulator protein [Ralstonia solanacearum CFBP2957] Length = 182 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G + E L E G+T + K E+G++ + ++ L P F Sbjct: 4 RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLFGE 62 >gi|238023271|ref|ZP_04603697.1| hypothetical protein GCWU000324_03198 [Kingella oralis ATCC 51147] gi|237865391|gb|EEP66531.1| hypothetical protein GCWU000324_03198 [Kingella oralis ATCC 51147] Length = 214 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ +R L ++Q L + + ++ + ++E + + A L +S++ + + Sbjct: 6 IGQRIKQKRKELHLTQADLAKKVQGVSHAAISQWETDITKPNAENLYDLSQIFKCDFVWL 65 Query: 74 FDVSPTVCSDISSE 87 + E Sbjct: 66 LRGEGENITPHKIE 79 >gi|90413759|ref|ZP_01221747.1| Hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90325228|gb|EAS41725.1| Hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 125 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 10/123 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ R G++Q + + L + Q E G L ISE+ E P+++F Sbjct: 8 IAARIKEAREWKGLTQVHMAQQLQVARQTYLDLETGKTEPKVRLLSEISEITERPLTWFV 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + S + + +L +YF ++ R I++ ++ +Y Sbjct: 68 YGDEGIEILESEYKEEID---------RLLQYFSRLPHSA-RNIILQQSINLAGFMAEYT 117 Query: 135 TIE 137 Sbjct: 118 KAL 120 >gi|17547868|ref|NP_521270.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17430173|emb|CAD16858.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 113 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+ +G+RI+L R SQE L + + E+G+ L +I L Sbjct: 17 PAPILSALGERIKLCRHAADKSQETLAFEALVDRTYISSIERGIANPSIETLANICYALN 76 Query: 68 SPISFFFDVSP 78 ++ F Sbjct: 77 VTLAELFGPMD 87 >gi|293610665|ref|ZP_06692965.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827009|gb|EFF85374.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 183 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 33/93 (35%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V +VG IR R +SQ+ L + G++ + + E G + ++L I+ VL Sbjct: 5 STVLQHVGTNIRSLRDERDLSQQDLADLAGVSRRTIAALETGQVNISLAKLDSIAAVLGV 64 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 + + + L Sbjct: 65 DFKTIVSAPEHKEHAVVNALAWQGKDEESKATL 97 >gi|257465738|ref|ZP_05630109.1| Repressor of flagellae, putative [Actinobacillus minor 202] gi|257451398|gb|EEV25441.1| Repressor of flagellae, putative [Actinobacillus minor 202] Length = 110 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 1/107 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 ++G I+ R G+SQ++L + G++ Q+ + E G N + + I+ L I Sbjct: 3 HLGDNIKRIRKTAGISQQELADMSGVSKAQISRLENGEQNNPQINTIVSIASNLGVSIEE 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 T + + +L + +I + + Q + Sbjct: 63 IIYGEKTDSFSYLEKALKELPQDDQESIRKLIKVWILMSQSEKLQTL 109 >gi|269928987|ref|YP_003321308.1| transcriptional regulator of molybdate metabolism, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269788344|gb|ACZ40486.1| transcriptional regulator of molybdate metabolism, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 378 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R RR+ G+SQ+ L E G+T Q V E G + ++ L P+ F + Sbjct: 12 SQVRERRIAAGLSQQALAERAGLTRQAVSAIEAGRYLPNTAVALRLARALGCPVEELFRL 71 Query: 77 SP 78 Sbjct: 72 PD 73 >gi|227498382|ref|ZP_03928532.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226903844|gb|EEH89762.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 249 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 9/120 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +I+ R+ M+ + L E + + + KYEKG + S L I+ L P++ Sbjct: 5 KEIGSKIKFYRIQKHMTIKDLAESICKSQATLYKYEKGQIALDLSVLYDIASALSIPVTA 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSSEK 131 P ++++ P F ++KI E L+ I +E+ Sbjct: 65 LLYEPPLPKKEMAASI--------VPAFFSGLTSFYAYTYDGRQKKIRESLIECIQKAEE 116 >gi|189465130|ref|ZP_03013915.1| hypothetical protein BACINT_01474 [Bacteroides intestinalis DSM 17393] gi|218131566|ref|ZP_03460370.1| hypothetical protein BACEGG_03186 [Bacteroides eggerthii DSM 20697] gi|189437404|gb|EDV06389.1| hypothetical protein BACINT_01474 [Bacteroides intestinalis DSM 17393] gi|217986235|gb|EEC52573.1| hypothetical protein BACEGG_03186 [Bacteroides eggerthii DSM 20697] Length = 117 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 37/86 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ ++ R + G +QE++ + +GI YE G V L+ +S + Sbjct: 4 INQIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYEGGTREVPYDILERLSNLFGCEP 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIS 96 F+ + ++I + + D Sbjct: 64 FILFEDNIQADNEIMATAFRISDLED 89 >gi|150021356|ref|YP_001306710.1| XRE family transcriptional regulator [Thermosipho melanesiensis BI429] gi|149793877|gb|ABR31325.1| transcriptional regulator, XRE family [Thermosipho melanesiensis BI429] Length = 72 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 30/70 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R ++Q++L + +G+T + + YE G + +++ L + F+ Sbjct: 3 LRELREKKMLTQQQLAKLIGVTQRTISAYEIGQAKPSLDVAIRLAKALGVSVEDVFEAWV 62 Query: 79 TVCSDISSEE 88 S S E Sbjct: 63 EGKSSQSPSE 72 >gi|104780997|ref|YP_607495.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila L48] gi|95109984|emb|CAK14689.1| putative transcriptional regulator, Cro/CI family [Pseudomonas entomophila L48] Length = 104 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R + ++Q +LGE G + + ++E G L + +E L FF Sbjct: 6 LGPALRRYRKLASLTQAQLGERTGFDPKTISRFETGTYTPSIEALMNFAEALGVKPKVFF 65 Query: 75 DVSPTVCSDIS 85 + Sbjct: 66 AEPDDEEEQRA 76 >gi|20808559|ref|NP_623730.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4] gi|20517186|gb|AAM25334.1| predicted Transcriptional regulator [Thermoanaerobacter tengcongensis MB4] Length = 123 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 5/103 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR R ++ L + G++ + E + ++ L + L I + Sbjct: 4 VGERIRYARKKNNLTIPALSKLTGLSPGNLSDLENNKSMPSSNALIKLKNALNVSIDWLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 E+ +V L + ++ + + R Sbjct: 64 TGEMPSEVKEEEEKYSV-----DKSEDLLLKAIKELPEERKRD 101 >gi|302038624|ref|YP_003798946.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira defluvii] gi|300606688|emb|CBK43021.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira defluvii] Length = 202 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/142 (14%), Positives = 45/142 (31%), Gaps = 8/142 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 ++K +VG +R R +S L + G + + + E + + Sbjct: 16 TEDRKK-----THVGDIVRRLRKSRHLSVRTLADKCGFSPSFISQVELRQASPSIASTER 70 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ-KII 120 I+ L + FF + + + + + + + I + + +I Sbjct: 71 IASALGVTLGEFFRTTSPSHAAVIRADARPV--VESEWSRARIEAIGPISEDSQLEPMVI 128 Query: 121 ELVRSIVSSEKKYRTIEEECMV 142 L S + Y E+ V Sbjct: 129 TLESGGASGSRPYVRRAEQLAV 150 >gi|300776142|ref|ZP_07086001.1| regulatory protein [Chryseobacterium gleum ATCC 35910] gi|300505275|gb|EFK36414.1| regulatory protein [Chryseobacterium gleum ATCC 35910] Length = 130 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 47/124 (37%), Gaps = 5/124 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++RL R G +Q+++ + + + E G R+ ++ L+ PI ++ Sbjct: 4 EKLRLIRKQKGYTQQQVADFIATDVSNYSRKESGDVRIIRDEWDKLARFLDVPIEDIYE- 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 I+++ D S+ + + I I L I +++ + Sbjct: 63 EDEPAVIINNDHPVFNDRSSSAGVITNQNNYDNIP----GDIIKNLQNYIALLKEENERL 118 Query: 137 EEEC 140 ++E Sbjct: 119 KKEL 122 >gi|226323413|ref|ZP_03798931.1| hypothetical protein COPCOM_01187 [Coprococcus comes ATCC 27758] gi|225208097|gb|EEG90451.1| hypothetical protein COPCOM_01187 [Coprococcus comes ATCC 27758] Length = 119 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/113 (12%), Positives = 44/113 (38%), Gaps = 6/113 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ LG+++++ + + I+ +YE G + ++EV + + Sbjct: 7 ERLKECRLKLGITKQEAAKRVQISQPAYLRYEAGSRNPSIQTIAKMAEVFSTSTDYLVGK 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S + N +P L + + ++ + +++ ++ Sbjct: 67 SADPTPNRIVVVQN-----ESPSLFFLIETCKNL-NASQLTRLTDYAKALSNA 113 >gi|218510320|ref|ZP_03508198.1| transcriptional regulator [Rhizobium etli Brasil 5] Length = 206 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 12/148 (8%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K + + + G+ +R R G S ++L + G++ + + E G + S L I Sbjct: 12 EAKDAADEITVQTGQNLRRIRTRRGYSLDRLAKIAGVSRAMLGQIETGKSSPTLSILSKI 71 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + L P + + + I + +++ +G R ++ +E Sbjct: 72 AVALGIPCAALI--AERGETPIIAVPRAKSKILASSEGRFQTRALF----PFEGERKVEF 125 Query: 123 VR-SIVSSEKKYRTIE-----EECMVEQ 144 I + E +V Q Sbjct: 126 YELRIAPHHTEKADAHQHGTVENLVVAQ 153 >gi|197302202|ref|ZP_03167261.1| hypothetical protein RUMLAC_00929 [Ruminococcus lactaris ATCC 29176] gi|197298633|gb|EDY33174.1| hypothetical protein RUMLAC_00929 [Ruminococcus lactaris ATCC 29176] gi|291526721|emb|CBK92307.1| Helix-turn-helix [Eubacterium rectale M104/1] Length = 209 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R++ RR+ L ++Q + E +G+T + +YE G + +SE L + + Sbjct: 10 IGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ + + QL + +D + ++ +++ Sbjct: 70 KGETDEYETDITDKRELQIRDAMGDILEQLPLALTKEEDAFSKDLLLLMLKQ 121 >gi|157377494|ref|YP_001476094.1| transcriptional regulator protein-like protein [Shewanella sediminis HAW-EB3] gi|157319868|gb|ABV38966.1| transcriptional regulator protein-like protein [Shewanella sediminis HAW-EB3] Length = 78 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R +Q L E L ++ Q + EKG ++ + E+ I FD Sbjct: 3 NRLKVLRAERNWTQADLAEKLDVSRQTINAIEKGKYDPSLPLAFKVARLFEASIETIFDD 62 Query: 77 SPTVCSDISS 86 V S+ SS Sbjct: 63 EVEVDSEPSS 72 >gi|150390409|ref|YP_001320458.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950271|gb|ABR48799.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 179 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 38/76 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++IR R++ ++Q++L + +T + K E+ + + L I E L ++ Sbjct: 1 MDIGEKIRRLRILNELTQDELAQRCDLTKGFISKIERNITSPSIATLMDILEALGIDVNK 60 Query: 73 FFDVSPTVCSDISSEE 88 FF+ + E+ Sbjct: 61 FFNEDVQDKIVYTKED 76 >gi|114800333|ref|YP_761750.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114740507|gb|ABI78632.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 75 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 15 VGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RIR R G MSQ L E +G+T Q V E G I+ V + I Sbjct: 7 ITNRIRELRESHGAMSQAALAEAIGVTRQTVIAIELGKYSPSLESAFRIARVFDLGIEDV 66 Query: 74 FDVSPTVCS 82 F P S Sbjct: 67 FGWQPPPLS 75 >gi|330874288|gb|EGH08437.1| XRE family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 115 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 43/112 (38%), Gaps = 12/112 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R++ R LG+SQ + G L ++ + YE G N + + + + + Sbjct: 7 VGERLKEERERLGLSQTEFGTRLRVSRGTQKNYELGANSLDLRYVAALVDQ-GIDAGYVL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + + +L + ++ ++ + +V+S+ Sbjct: 66 TGHRSPAPGQGLKPDE----------AELVDQYRRLP-ADDQKTVRRIVKSM 106 >gi|313905251|ref|ZP_07838618.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313469862|gb|EFR65197.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 119 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 27/77 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR RM G++ E+L + + ++ V +E L +S+ I + Sbjct: 8 SRIRKLRMDRGLTMERLSKDVKVSRSAVAMWESNGTVPRDDLLIKLSKYFGVSIDYLLGN 67 Query: 77 SPTVCSDISSEENNVMD 93 SE + Sbjct: 68 EKMEDKGPESERLQYIQ 84 >gi|306830136|ref|ZP_07463320.1| hypothetical transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304427662|gb|EFM30758.1| hypothetical transcriptional regulator [Streptococcus mitis ATCC 6249] Length = 228 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 53/126 (42%), Gaps = 28/126 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + +L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSQEKVAQLENILKVAKGYF--- 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE--KKYR 134 +++ R + + + + K++ R++ E +K Sbjct: 62 ----------------------TQIEIVRLYNSLSK-QGKDKVVLYARNLAKEEQTQKVM 98 Query: 135 TIEEEC 140 T+ E Sbjct: 99 TMPERL 104 >gi|227879298|ref|ZP_03997165.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256844478|ref|ZP_05549964.1| predicted protein [Lactobacillus crispatus 125-2-CHN] gi|262047150|ref|ZP_06020108.1| predicted protein [Lactobacillus crispatus MV-3A-US] gi|227861093|gb|EEJ68745.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256613556|gb|EEU18759.1| predicted protein [Lactobacillus crispatus 125-2-CHN] gi|260572395|gb|EEX28957.1| predicted protein [Lactobacillus crispatus MV-3A-US] Length = 96 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I+ R ++Q +L E +G+T + + EKG + + + E+ I Sbjct: 2 MIINNKIKEYRKKHQLTQRELAEKVGVTERTIISLEKGRYKPSIVLAYKLVQFFETDIET 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 F ++ V ++ + N F + L Sbjct: 62 LFCLNEYVKNEQAKGRNAYNSFCDSISHTAL 92 >gi|254502669|ref|ZP_05114820.1| bacteriophage CI repressor protein, putative [Labrenzia alexandrii DFL-11] gi|222438740|gb|EEE45419.1| bacteriophage CI repressor protein, putative [Labrenzia alexandrii DFL-11] Length = 147 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+RI R I G+S +L LGI +Q +E + +++L ++ +L + Sbjct: 38 DYTLGERICKARDIAGLSTAQLARRLGIKTSTLQSWESDRSEPRSNKLILLAGILNVSPT 97 Query: 72 FFF--DVSPTVCSDISSEENNVMDFIST 97 + SP V D S++ +++ + Sbjct: 98 WLLVGRGSPPVAEDTSADLDSMRVALDR 125 >gi|218235129|ref|YP_002366064.1| transcriptional regulator SinR [Bacillus cereus B4264] gi|228938496|ref|ZP_04101105.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971375|ref|ZP_04132001.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977987|ref|ZP_04138367.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis Bt407] gi|229108836|ref|ZP_04238441.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-15] gi|229149581|ref|ZP_04277813.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1550] gi|218163086|gb|ACK63078.1| transcriptional regulator SinR [Bacillus cereus B4264] gi|228633927|gb|EEK90524.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1550] gi|228674605|gb|EEL29844.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-15] gi|228781775|gb|EEM29973.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis Bt407] gi|228788242|gb|EEM36195.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821233|gb|EEM67249.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939004|gb|AEA14900.1| SinR protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 107 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T +++ SE V D +++ + R F Sbjct: 61 LLHDETTKETNLDSEWTQLVKDAMNSGVSKEQFREF 96 >gi|192291255|ref|YP_001991860.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192285004|gb|ACF01385.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length = 207 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 45/136 (33%), Gaps = 12/136 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R+ G S E+L + G++ + + E G + L ++ L P + Sbjct: 26 VGHNLRRLRVRQGYSLERLAKQSGVSRAMLGQIETGKSVPTIGTLWKVATALGVPFARLI 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR-SIVSSEKKY 133 + + +++ G +R ++ +E + ++ Sbjct: 86 ATETPHHPQVLRRTDAK--LLTSNQGQFTSRALF----PFDGERQVEFYELRLAPLHRED 139 Query: 134 RTIE-----EECMVEQ 144 E +V + Sbjct: 140 ADPHAAGTRENLVVAK 155 >gi|116871710|ref|YP_848491.1| transcriptional repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740588|emb|CAK19708.1| transcriptional repressor, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 68 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 28/59 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 + IR R ++Q+++ + L ++ +YE G A+ L I++ + + + D Sbjct: 4 RNIRSIREDNDITQQQMAKLLNVSQNTYSQYETGKIEWTATALIKIADYFDVSVDYLLD 62 >gi|56696467|ref|YP_166824.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56678204|gb|AAV94870.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 217 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 8/92 (8%) Query: 1 MVGNKKIPNPV--------DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN 52 M + P+ V ++ +G+ +R R G++ +L + ++ + K E G Sbjct: 9 MTQLLQDPHSVREEREKVLEVAIGREVRAFRKQQGITVAELSKLTDLSIGMLSKIENGNT 68 Query: 53 RVGASRLQHISEVLESPISFFFDVSPTVCSDI 84 + LQ ++ L P++ FF I Sbjct: 69 SPSLTTLQTLANALSVPLTAFFKGYEEKREAI 100 >gi|86139426|ref|ZP_01057995.1| DNA binding protein, putative [Roseobacter sp. MED193] gi|85823929|gb|EAQ44135.1| DNA binding protein, putative [Roseobacter sp. MED193] Length = 188 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 33/78 (42%), Gaps = 3/78 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N P+ + + R++ R G+S E + G++ V + E+G + + L Sbjct: 1 MTEN---PDDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLW 57 Query: 61 HISEVLESPISFFFDVSP 78 +++ L+ + + Sbjct: 58 NLTRALQVDFAGLLEAGD 75 >gi|323357780|ref|YP_004224176.1| transcriptional regulator [Microbacterium testaceum StLB037] gi|323274151|dbj|BAJ74296.1| predicted transcriptional regulator [Microbacterium testaceum StLB037] Length = 211 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 38/89 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G+S L LGI+ V + E+GV + SRL I++ L P+ F Sbjct: 27 VGARIRDLRQARGISARALAATLGISPSAVSQIERGVMQPSVSRLIAITDALGVPLVAAF 86 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 D + + + + + L Sbjct: 87 DPASDRPVEPVGPSGFTLQRAAQAADIVL 115 >gi|262164056|ref|ZP_06031795.1| protein of unknown function DUF955 [Vibrio mimicus VM223] gi|262027584|gb|EEY46250.1| protein of unknown function DUF955 [Vibrio mimicus VM223] Length = 375 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 53/133 (39%), Gaps = 7/133 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-F 74 G+R+RL R++ G + ++LG+ + +T Q + +YE + ++E L+ SFF Sbjct: 7 GERLRLARLLKGYTLQELGDAVSVTRQSIHQYESDIRVPADDIKNALAESLQVETSFFCM 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL---VRSIVSSEK 131 +S V + +S + + + I + V + + L + Sbjct: 67 PLSGDVKPEQCHFRKRQTTPVSVKNR---VQAYSTILEQLVAELHLHLDLPANRFNLVDN 123 Query: 132 KYRTIEEECMVEQ 144 ++E+ Sbjct: 124 DKIPELTSLVIEK 136 >gi|257868500|ref|ZP_05648153.1| DNA binding protein [Enterococcus gallinarum EG2] gi|257802664|gb|EEV31486.1| DNA binding protein [Enterococcus gallinarum EG2] Length = 70 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 24/66 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G+SQ +L +G++ Q + E I+ + + F + Sbjct: 5 NRLRSIREEQGLSQGELAAIMGVSRQTINAIETHKYNPSLELALRIAHYFKLSVEELFKL 64 Query: 77 SPTVCS 82 + Sbjct: 65 TGGTNE 70 >gi|213616057|ref|ZP_03371883.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 156 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ V +RI+ R MS ++L G++ + + E + L I+ + Sbjct: 16 STINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGV 75 Query: 69 PISFFFDVSPTV 80 ++ F +V+ Sbjct: 76 SVADFVNVASEP 87 >gi|152984498|ref|YP_001346411.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150959656|gb|ABR81681.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 68 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 20/66 (30%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G SQ L L ++ Q V E G + V I FD Sbjct: 3 NRVRELRAEHGWSQADLAAKLEVSRQTVNAIETGRYDPSLPLAFRFARVFGLAIEAIFDD 62 Query: 77 SPTVCS 82 Sbjct: 63 REQHPD 68 >gi|29377418|ref|NP_816572.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29344885|gb|AAO82642.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 316 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 28/70 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++ +L E LGI + +YE + + +++ ++ + Sbjct: 2 NRLKELRKEKNITLVELSEELGIPRSTLNRYENEDSEPKQETWEKLADYYGVSTAYLMGI 61 Query: 77 SPTVCSDISS 86 S S+ + Sbjct: 62 SNQKVSEEKA 71 >gi|46205131|ref|ZP_00209716.1| COG2932: Predicted transcriptional regulator [Magnetospirillum magnetotacticum MS-1] Length = 77 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR RR +LG++Q G +G+ + E+G + ++L I++ + Sbjct: 4 LGDRIRERRKLLGLNQTAFGTLVGLDQNTISDLERGK-TLETTKLHEIAQACGVSADWLI 62 Query: 75 DVSPTVCSDISS 86 + + Sbjct: 63 GRTDDPKGGPPT 74 >gi|322378166|ref|ZP_08052651.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] gi|321280896|gb|EFX57911.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] Length = 110 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 33/77 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++Q+ + L I+ Q++E G ++ ++ +++ + Sbjct: 4 ERLKKLRKEGKLTQKDIAAFLNISQPAYQQFESGKKKMNLETMKKLADFFNVSTDYLLGK 63 Query: 77 SPTVCSDISSEENNVMD 93 + D+ + + +D Sbjct: 64 TDFPDLDLEVDIDTAID 80 >gi|308179920|ref|YP_003924048.1| XRE family DNA-binding protein [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045411|gb|ADN97954.1| XRE family DNA-binding protein [Lactobacillus plantarum subsp. plantarum ST-III] Length = 102 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +++ R ++Q +L + L I+ + YE+G L I VL++ + Sbjct: 5 GDKLKSLRKAKKLTQVELAQQLDISKWAITSYEQGKTYPSIEVLIKICSVLDTSSDYLLG 64 Query: 76 VSP 78 +S Sbjct: 65 ISD 67 >gi|307277180|ref|ZP_07558284.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306506110|gb|EFM75276.1| helix-turn-helix protein [Enterococcus faecalis TX2134] Length = 71 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R G SQ +L + + +T Q V ++ G +++ +SE+L PI+ F Sbjct: 5 SNLSRYRKEKGFSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELFSD 64 >gi|296122389|ref|YP_003630167.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] gi|296014729|gb|ADG67968.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] Length = 82 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 PN + + ++ R GMSQ KL E G +F V ++E G + + ++E L Sbjct: 2 KPNELPEVFSRNLKAARQRAGMSQRKLAEITGCSFASVCRWETGRESPNLTTIVKLAEGL 61 Query: 67 ESPISFFFD 75 + P Sbjct: 62 QVPPEALLT 70 >gi|293396270|ref|ZP_06640548.1| DNA-binding protein [Serratia odorifera DSM 4582] gi|291421059|gb|EFE94310.1| DNA-binding protein [Serratia odorifera DSM 4582] Length = 229 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/131 (12%), Positives = 47/131 (35%), Gaps = 4/131 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ ++ R S + E G++ + + E+G + + L I+ S F Sbjct: 38 HLAHTLKHLRAERAWSLAQAAEHTGVSKAMLGQIERGESSPTVATLWKIATGFNVAFSVF 97 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + + N+ F +++ F D ++ + ++V + + Sbjct: 98 LEGAQPASQTMLHRHGNLPVFDQANASMRVMPLFPY--DRQLGFDMFDIV--LAAGATSA 153 Query: 134 RTIEEECMVEQ 144 + E ++E Sbjct: 154 SSPHESGVIEH 164 >gi|291458779|ref|ZP_06598169.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] gi|291418696|gb|EFE92415.1| toxin-antitoxin system, antitoxin component, Xre family [Oribacterium sp. oral taxon 078 str. F0262] Length = 183 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 31/61 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR R G++ ++LG+ +G++ ++ YE G L+ +++ L + Sbjct: 1 MTIGENIRRIRKERGLTLKQLGDEVGVSEAYIRAYETGRRNPKLKSLEALAKALHVNVEA 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|289674441|ref|ZP_06495331.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae FF5] Length = 182 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVE 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FF P + + + + ++D ++L Sbjct: 61 FFSEESVPENAAQVVYKASELIDISDGAVTMKLV 94 >gi|302864813|ref|YP_003833450.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315501098|ref|YP_004079985.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302567672|gb|ADL43874.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315407717|gb|ADU05834.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 187 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+RIR R G+S +L G+ + E GV L I+ L P+ Sbjct: 13 REVGRRIRSLRTERGISLSELARLAGVGKATLSGLENGVRNPRLETLYAITAQLGVPL 70 >gi|191638074|ref|YP_001987240.1| Repressor (Gp132 protein) [Lactobacillus casei BL23] gi|190712376|emb|CAQ66382.1| Repressor (Gp132 protein) [Lactobacillus casei BL23] gi|327385302|gb|AEA56776.1| Transcriptional regulator, XRE family [Lactobacillus casei BD-II] Length = 112 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 6/101 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+RI L R SQ +L + LGI V +E + + L+ +S + + I + Sbjct: 4 GQRISLLREKKHQSQAELAKTLGIAASTVGMWETNKRKPSSKMLKKLSVLYDVSIDYLLG 63 Query: 75 -----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 D +P+ + + +M F P + ++ Sbjct: 64 NDSTTDKTPSEVDIADPKNDTIMTFEGRPIPPEDLEIIKRL 104 >gi|186473323|ref|YP_001860665.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184195655|gb|ACC73619.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 189 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 51/132 (38%), Gaps = 9/132 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R L + ++ GI+ + + E+G+ + L I+ L + + Sbjct: 11 LALGSKIRALRQRLKRTLDETATAAGISKPFLSQVERGLASPSITSLAGIANALGVKVQY 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F D + + E F + F ++ ++ +++ ++ + +K+ Sbjct: 71 FVDTPSEERTVCRANELKFFGFADS------ANLFARMTNLSGGRQLEAILVRMPPGQKR 124 Query: 133 YR---TIEEECM 141 EE + Sbjct: 125 SEVTTHAGEEFI 136 >gi|116753476|ref|YP_842594.1| XRE family transcriptional regulator [Methanosaeta thermophila PT] gi|116664927|gb|ABK13954.1| transcriptional regulator [Methanosaeta thermophila PT] Length = 182 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R + +S E++ L + + YE G + AS L I++ L+ +S Sbjct: 7 EIGSRIRELRELSKISPEEMAGYLKVPLETYCGYESGHLDIPASLLFKIAQRLDVDMSLL 66 Query: 74 FDVSPTVCS 82 S Sbjct: 67 LTGQEPKMS 75 >gi|145221887|ref|YP_001132565.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315446377|ref|YP_004079256.1| XRE family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145214373|gb|ABP43777.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] gi|315264680|gb|ADU01422.1| transcriptional regulator, XRE family [Mycobacterium sp. Spyr1] Length = 222 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ +RL R G++ + +GI+ + K E S L +++ + P+ Sbjct: 35 IESAIGRNVRLLRQQQGLTVAETAARVGISKAMMSKIENAQTSCSLSTLALLAKGFDVPV 94 Query: 71 SFFFDVSPTVCSDI 84 + F + Sbjct: 95 TSLFRGADVERPAA 108 >gi|148253753|ref|YP_001238338.1| XRE family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405926|gb|ABQ34432.1| transcriptional regulator, XRE family [Bradyrhizobium sp. BTAi1] Length = 482 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 1/117 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R LG+SQ +L E LGI+ V E+ V A L ++E + + Sbjct: 9 LFVGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVSAQILLRLAETYDLDLRD 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 +E + F Q R ++ + + L + + Sbjct: 69 LATADEDRFFAELNEIFSDPLFRQIELPKQELRDLAELC-PGITHALQRLYAAYAEA 124 >gi|300856445|ref|YP_003781429.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436560|gb|ADK16327.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 71 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G++QE+L + L ++ Q + E G IS+ I F Sbjct: 3 NRLEKIRKQHGITQEELAQKLEVSRQTIGSLENGRYNPSILLAFKISKFFNVSIEEIFIY 62 Query: 77 SPTVCSDI 84 + ++ Sbjct: 63 EESSENEN 70 >gi|295703244|ref|YP_003596319.1| HTH-type transcriptional regulator SinR [Bacillus megaterium DSM 319] gi|294800903|gb|ADF37969.1| HTH-type transcriptional regulator sinR [Bacillus megaterium DSM 319] Length = 120 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 1/84 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISF 72 +G+RI+ R+ S +L E I+ + + EKG N L I+ L + I + Sbjct: 1 MIGERIKEIRLRKHYSITRLAEEAQISKSYLSQIEKGANTNPSLQMLYKIAASLGTTIDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 D ++ S +++S Sbjct: 61 LIDEKTDGVTNKESAPYITEEWLS 84 >gi|229166214|ref|ZP_04293974.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH621] gi|228617312|gb|EEK74377.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH621] Length = 107 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T S + SE V D +S+ + R F Sbjct: 61 LLHDETTTESHLDSEWTQLVKDAMSSGVSKEQFREF 96 >gi|254459413|ref|ZP_05072833.1| putative transcriptional regulator [Campylobacterales bacterium GD 1] gi|207083874|gb|EDZ61166.1| putative transcriptional regulator [Campylobacterales bacterium GD 1] Length = 236 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 37/92 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I++ R G+SQ G+ L + + V +E N ++ + + + +S+ Sbjct: 1 MLGNKIKIIREQAGLSQSDFGKELDVNQRTVSNWESERNEPSIVAIKTMVKKWKVSLSWL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 T+ +I V + I + + Sbjct: 61 ILNEGTINPEIDQIYAEVKEDIFKKNKEDELK 92 >gi|254465630|ref|ZP_05079041.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206686538|gb|EDZ47020.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 207 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 2/69 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+D +G R+R R + E G+ + K E G L+ ++ L Sbjct: 21 NAEPLD--LGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSPTYEALKKLAVGL 78 Query: 67 ESPISFFFD 75 + + F Sbjct: 79 QISVPQLFT 87 >gi|254461150|ref|ZP_05074566.1| DNA-binding protein [Rhodobacterales bacterium HTCC2083] gi|206677739|gb|EDZ42226.1| DNA-binding protein [Rhodobacteraceae bacterium HTCC2083] Length = 190 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 36/95 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ L + L + + + E+ ++ L+ I+++L+ P+S F Sbjct: 12 LGADLRALRKSRGLTLSDLADALDRSLGWISQVERDLSEPSVFDLKQIAKILDVPVSILF 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +PT + L + Sbjct: 72 GQAPTPAQEAGIIVRAHARRPIGSKEQGLVEELLS 106 >gi|167620618|ref|ZP_02389249.1| helix-turn-helix domain protein [Burkholderia thailandensis Bt4] Length = 114 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 53/106 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+ I +R+I G++Q+K+ E LGI + V + E+GV RL ++++ + + Sbjct: 3 VVVGRAIAKQRVISGLTQDKVAERLGIGLEAVSRMERGVVIPTVVRLFELADIFQCDAAD 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + + SD +S ++ +S D L F ++ R++ Sbjct: 63 LLTEASSRSSDQASHLTRLLSRLSAADRTLLLEVFERLSTRLTRRQ 108 >gi|126179356|ref|YP_001047321.1| XRE family transcriptional regulator [Methanoculleus marisnigri JR1] gi|125862150|gb|ABN57339.1| transcriptional regulator, XRE family [Methanoculleus marisnigri JR1] Length = 72 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI++ R + M+QE+L + + +T + + E+G I++ I F Sbjct: 3 NRIKVFRAMHDMTQEELADAIRVTRRTINSIERGKYNPSIEVAYRIAKTFGVTIEEVFCF 62 Query: 77 SPTVCSDI 84 ++ Sbjct: 63 EDGEDTED 70 >gi|42794875|gb|AAS45802.1| RegA [Streptomyces lavendulae] Length = 142 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 10/143 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGM-SQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N + + V I G R+R R+ G+ +Q +L E LG V +E + + L Sbjct: 1 MRHNDRGKDRVRIR-GGRLRELRIQRGLHTQRQLAEALGCARSSVTTWEASKSVPRPAML 59 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 I+ +L++ D S + + ++ G D + RQ I Sbjct: 60 FRIAALLDASPDDLIDASRVKLKTLRTACGLRQSDMAEALG---VAPSTYCDVERQRQAI 116 Query: 120 IE-----LVRSIVSSEKKYRTIE 137 + L + + E R + Sbjct: 117 PDRWFPILAKILSQPESAVRELL 139 >gi|77407989|ref|ZP_00784738.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77173351|gb|EAO76471.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 358 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 45/113 (39%), Gaps = 4/113 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I L+R +GM+QE L + L +T + K+E + L ++ + + + Sbjct: 1 MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDL 60 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 +S + + + + +S D Q + + + +I + Sbjct: 61 VGYQKTLSDDQRNQLIKDLKIKANVLSERDFFQEVKELSKQFPNDFKTLLIMI 113 >gi|25012032|ref|NP_736427.1| hypothetical protein gbs1994 [Streptococcus agalactiae NEM316] gi|77413860|ref|ZP_00790038.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|24413575|emb|CAD47653.1| Unknown [Streptococcus agalactiae NEM316] gi|77160100|gb|EAO71233.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 358 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 45/113 (39%), Gaps = 4/113 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I L+R +GM+QE L + L +T + K+E + L ++ + + + Sbjct: 1 MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDL 60 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 +S + + + + +S D Q + + + +I + Sbjct: 61 VGYQKTLSDDQRNQLIKDLKIKANVLSERDFFQEVKELSKQFPNDFKTLLIMI 113 >gi|319787536|ref|YP_004147011.1| hypothetical protein Psesu_1943 [Pseudoxanthomonas suwonensis 11-1] gi|317466048|gb|ADV27780.1| helix-turn-helix domain protein [Pseudoxanthomonas suwonensis 11-1] Length = 125 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 3/121 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFFFDV 76 RIR+ R +SQE L LG++ V +E V +RL+ +++ + Sbjct: 6 RIRIARQRAKLSQEALARMLGVSRGAVANWECAVGSLPATTRLERLAQATGVCFEWLATG 65 Query: 77 S-PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 P ++ + ++I P +L + + +++ ++ L + + + R Sbjct: 66 RGPITYTEPVPRPSTEGEWIDDPIERRLVQAYRVASRP-LQRMLLRLAEAQLQDPDERRR 124 Query: 136 I 136 Sbjct: 125 A 125 >gi|258654157|ref|YP_003203313.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557382|gb|ACV80324.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 187 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 4/96 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + +P+ +G+R+R R G+S L + GI + + E G S L Sbjct: 1 MDSPDLPH----LIGERLRAARTEQGLSVGGLAQAAGIGKGSLSEIENGTRNPTLSTLYG 56 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 ++ L P+S+ ++D +T Sbjct: 57 LANALGRPLSWLLAEQVGAQVSSPGIAARLLDTSAT 92 >gi|256422859|ref|YP_003123512.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256037767|gb|ACU61311.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 87 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+I G + R + G+S + + + + + +E+G + G L +SE + Sbjct: 2 SVNITFGDNLTYLRHLRGISVQDMADMFCVHKATFRYWERGRSSPGYETLVKLSEYFQVS 61 Query: 70 ISFFF 74 + Sbjct: 62 VDNLL 66 >gi|225389221|ref|ZP_03758945.1| hypothetical protein CLOSTASPAR_02967 [Clostridium asparagiforme DSM 15981] gi|225044715|gb|EEG54961.1| hypothetical protein CLOSTASPAR_02967 [Clostridium asparagiforme DSM 15981] Length = 156 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK I R ++Q +LG+ LG+T + + ++E G + LQ + VL+ I+ Sbjct: 7 GKFIAELRKEKSLTQAQLGDLLGVTNKTISRWENGNYMPDLAVLQSLCAVLDVNINEMIS 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 +D + +N + +S ++ R + ID Sbjct: 67 GRRLDEADFRQQADNNL-LLSLDQARRMRREYKLID 101 >gi|161521402|ref|YP_001584829.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160345452|gb|ABX18537.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] Length = 179 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 15/117 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R+R R +SQ E G+T + YEKG A L+ I+ + F Sbjct: 30 VSIGDRLRDERKRTSLSQRAFAERGGVTEKTQVLYEKGERVPDAIYLEKIAA-AGVDVLF 88 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 EE L + + D K R ++ ++ + Sbjct: 89 VLTGHRNSAELSPDEEV-------------LVTGYRSL-DAKGRAGVLGMIAGMTQQ 131 >gi|77919058|ref|YP_356873.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77545141|gb|ABA88703.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM 2380] Length = 188 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 42/103 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +GK+++ R+ G++ + L G++ + + E+G+ L ++ L I Sbjct: 2 IKTLIGKKLKTTRLGKGLTIQGLTNLSGVSANMISRIERGLTVPSVKILMKLASALGMSI 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 +F + + + I + + D Q++ + D Sbjct: 62 GYFVEEAEKSSTVILTRKGQGEPLFFYKDKQQISSLTQGLQDP 104 >gi|39937189|ref|NP_949465.1| XRE family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39651047|emb|CAE29570.1| possible transcriptional regulator, XRE family [Rhodopseudomonas palustris CGA009] Length = 116 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 4/108 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N+K P + +R++ R + G++Q +L G+ V +E G + L+ ++ Sbjct: 2 NEKQPTDIFQ---QRLKDARTLRGLNQAELAGKAGLPAASVSHFESGPRKPSFDNLKALA 58 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFI-STPDGLQLNRYFIQI 110 L+ + S T + + D T L+L F+ + Sbjct: 59 SALDVTTDYLLGRSDTPEASAETIGRLHRDLGKLTEQDLKLATDFLDL 106 >gi|88858937|ref|ZP_01133578.1| hypothetical protein PTD2_08034 [Pseudoalteromonas tunicata D2] gi|88819163|gb|EAR28977.1| hypothetical protein PTD2_08034 [Pseudoalteromonas tunicata D2] Length = 170 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 13/123 (10%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN + G+R+ R LG++Q L E +G+T Q + E + + RL I+E L Sbjct: 11 MPNTI----GERVAAERKKLGLTQTALAEKVGVTQQAIGNIENNRS--DSKRLADIAEAL 64 Query: 67 ESPISFFFDVSPTVCSD---ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 ++ + T ++ + ++ N + ST ++ I + + I+ + Sbjct: 65 GVTYTYLKTGNNTTIANHLSVVNDTNVNYNINSTATYDEI----KDIVPSALDRTIVAIT 120 Query: 124 RSI 126 + + Sbjct: 121 KRL 123 >gi|332366465|gb|EGJ44213.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 94 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+++ R G SQ ++ E LG T Q + +E + ++ L +++ + + Sbjct: 1 MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60 >gi|329891045|ref|ZP_08269388.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328846346|gb|EGF95910.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 90 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 33/85 (38%), Positives = 60/85 (70%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +D+++G+R+R RR +LG++Q++LG+ +GI FQQ+QKYE G NR+ A+RL ++E L Sbjct: 1 MPAEIDLHLGRRLRRRRRLLGLTQQQLGDRVGIRFQQIQKYECGANRISAARLWELAEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNV 91 ++P+S+F+D + + + Sbjct: 61 QTPVSYFYDGAGESPDNSQPRPDAP 85 >gi|328955378|ref|YP_004372711.1| XRE family transcriptional regulator [Coriobacterium glomerans PW2] gi|328455702|gb|AEB06896.1| transcriptional regulator, XRE family [Coriobacterium glomerans PW2] Length = 210 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R G SQ +L + +G T QQ+ +YE G N V +S L +S L IS+ + Sbjct: 5 KISEARHAKGWSQAELAKRIGTTQQQIARYESGDNDVKSSVLIKLSSALGVTISYLLGLE 64 Query: 78 PTVCSDISSE 87 TV + + Sbjct: 65 NTVAAQPAPS 74 >gi|296393236|ref|YP_003658120.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296180383|gb|ADG97289.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 258 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 8/121 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHISEVL 66 D+ +GKRI+ R G++Q +L I Q + K E G + I++ L Sbjct: 8 DLAIGKRIQALRNERGLTQGQLAAEASKHGDLIYQQTIAKIETGNRGLKFEEGIAIAKAL 67 Query: 67 ES-PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 P+ + S ++ + +V L F+ ++D R+ +R Sbjct: 68 NVDPVDLLSEESIEEKLLNATLDFSVSALRDYAFRTGLTPVFMMLNDF--RRAEANYLRR 125 Query: 126 I 126 + Sbjct: 126 M 126 >gi|225389143|ref|ZP_03758867.1| hypothetical protein CLOSTASPAR_02889 [Clostridium asparagiforme DSM 15981] gi|225044801|gb|EEG55047.1| hypothetical protein CLOSTASPAR_02889 [Clostridium asparagiforme DSM 15981] Length = 73 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R L +SQE+L E +G+T Q + E G + I +VL + F Sbjct: 14 KLKSARAALDLSQEELAEKVGVTRQTIGMIEAGKYNPTLNLCVAICKVLGKTLDDLFWEE 73 >gi|118445241|ref|YP_891175.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118419802|gb|ABK88220.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] Length = 115 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I+ R ++QE+L E G++ Q++ +E + L+ ++ + Sbjct: 5 VGQNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKILASFFNTSTDALL 64 Query: 75 DVSPTVCSDIS 85 + + Sbjct: 65 NFENRKEDALL 75 >gi|222053702|ref|YP_002536064.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221562991|gb|ACM18963.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 106 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 45/90 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R + M+QEKL E +G+ + V E G + ++ I++ L+ + F Sbjct: 8 LGARIKELRKLRKMTQEKLAEQIGVDPKYVSFIEVGRSSPSLEAMEKIAQALDVEMKDMF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D S ++S E+ + M T D L++ Sbjct: 68 DFSHHEAREVSIEQIDEMLSGVTEDQLKII 97 >gi|330468614|ref|YP_004406357.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328811585|gb|AEB45757.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 401 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 8/120 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G ++P +G+R+ RM M+Q+ L + LG + V K E+G R+ + Sbjct: 1 MTGRSEVP------IGRRVAQWRMRRRMTQQCLADRLGKSKSWVDKVERGARRLDRFSVI 54 Query: 61 H-ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 I+EVL + P + + + G+ Q+ ++R+++ Sbjct: 55 QAIAEVLRIDPAVLLGQHPPPAGGDVRDGFDGVRAALARYGVFEASA-RQVPVAELRRRV 113 >gi|325261429|ref|ZP_08128167.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324032883|gb|EGB94160.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 67 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + IR R +Q+++ + L IT KYE G + + ++++ + + Sbjct: 1 MIYENIRNIREDKDKTQKEIADYLNITQTTYSKYELGKINIPVEVFEKLADLYGVTVDYL 60 Query: 74 F 74 Sbjct: 61 L 61 >gi|302672233|ref|YP_003832193.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396706|gb|ADL35611.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 364 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 29/89 (32%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + + I+ R M+Q +L + ++ Q + ++E G + L I++ I Sbjct: 2 IKLNENIKRYRQQKCMTQSQLADVFNVSEQAISRWENGNTYPDITLLPAIADYFHVTIDE 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 + + + Sbjct: 62 LMGMESYKDEREIEKVFEQCRENDRKGHV 90 >gi|302670016|ref|YP_003829976.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302394489|gb|ADL33394.1| HTH/TPR domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 210 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 5/130 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R+ ++QE + E LGIT Q V K+E+G + + L ++ + E+ + + Sbjct: 6 ANLKKYRIQKDLTQEDVAEFLGITAQSVSKWERGESYPDITLLPALANIFETSVDLLLGM 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ---IDDVKVRQKIIELVRSIV--SSEK 131 + + + + + I+ L ++ + Sbjct: 66 DTIRAEQTRLDIHKKAISFQRSGNYDMAEKTYREALLIYPNKPGMILGLASTLALKGETE 125 Query: 132 KYRTIEEECM 141 + + E + Sbjct: 126 EAIELMERGL 135 >gi|227529967|ref|ZP_03960016.1| XRE family transcriptional regulator [Lactobacillus vaginalis ATCC 49540] gi|227350152|gb|EEJ40443.1| XRE family transcriptional regulator [Lactobacillus vaginalis ATCC 49540] Length = 214 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 9/73 (12%), Positives = 26/73 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R +Q+ + E L ++ + + +E + L IS++ + Sbjct: 11 QKMKSYRQKNNWTQQDIAERLNVSRKTISSWENSRSYPDIFMLVQISDLYRVSLDDLLRE 70 Query: 77 SPTVCSDISSEEN 89 + E Sbjct: 71 DHKMIDSYKQEHE 83 >gi|311741369|ref|ZP_07715193.1| XRE family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311303539|gb|EFQ79618.1| XRE family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 64 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G+SQ+ L LG++ Q V EKG I+ I F Sbjct: 3 NRLKEIRESKGLSQQGLATELGVSRQTVISIEKGRYDPSLPLAFQIARHFSCRIEDIF 60 >gi|255505928|ref|ZP_05348929.3| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265073|gb|EET58278.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 112 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 35/72 (48%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G RI+ R +QE++ + +G++ Q+ + E G N + L I+EVL+ + Sbjct: 3 MNELLGGRIKALRNAKNFTQEQIADRIGVSRQKYARIENGANSITLDILSAIAEVLDVTV 62 Query: 71 SFFFDVSPTVCS 82 V + Sbjct: 63 GDITKVLDEKPA 74 >gi|254476225|ref|ZP_05089611.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214030468|gb|EEB71303.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 207 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 2/66 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D +G R+R R + E G+ + K E G L+ ++E L+ Sbjct: 24 PLD--LGARVRELRKARDWTLEYAANQAGLARSTLSKIENGQMSPTYEALKKLAEGLQIT 81 Query: 70 ISFFFD 75 I F Sbjct: 82 IPQLFT 87 >gi|161508263|ref|YP_001569094.1| DNA-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734835|ref|ZP_04869000.1| DNA-binding protein [Staphylococcus aureus subsp. aureus TCH130] gi|282912706|ref|ZP_06320501.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WBG10049] gi|160369778|gb|ABX30747.1| DNA-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727208|gb|EES95937.1| DNA-binding protein [Staphylococcus aureus subsp. aureus TCH130] gi|270269068|gb|ACZ66060.1| hypothetical protein SAP035B_020 [Staphylococcus aureus] gi|270269096|gb|ACZ66088.1| hypothetical protein SAP036A_016 [Staphylococcus aureus] gi|270269128|gb|ACZ66120.1| hypothetical protein SAP042A_015 [Staphylococcus aureus] gi|270300247|gb|ACZ69053.1| hypothetical protein SAP058A_010 [Staphylococcus aureus] gi|270300466|gb|ACZ69272.1| hypothetical protein SAP071A_016 [Staphylococcus aureus] gi|282323431|gb|EFB53748.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WBG10049] gi|312439078|gb|ADQ78148.1| DNA-binding protein [Staphylococcus aureus subsp. aureus TCH60] gi|320143353|gb|EFW35135.1| helix-turn-helix protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 113 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ +R + G SQE+L L ++ Q V K+E N L +S++ I Sbjct: 1 MKLAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITIDH 60 Query: 73 FFDVS 77 Sbjct: 61 LIKGD 65 >gi|150020470|ref|YP_001305824.1| cupin 2 domain-containing protein [Thermosipho melanesiensis BI429] gi|149792991|gb|ABR30439.1| Cupin 2, conserved barrel domain protein [Thermosipho melanesiensis BI429] Length = 178 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 1/108 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R+ G +QE+L + ++ + + E L+ I VL S + FF Sbjct: 4 LGSKIRTLRVARGYTQEELADRCDLSRSFISQLENDQVSPSIDTLERILRVLGSDLKTFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + ++ V ++ I+D + K+IE+ Sbjct: 64 SNDKRQEKIVFKVKDRVPMYLDELGIKGFI-LMDNIEDKSIDPKLIEM 110 >gi|187923443|ref|YP_001895085.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187714637|gb|ACD15861.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 191 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 2/94 (2%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K V I++G +IR R L + +++ GI+ + + E+G + L I+ Sbjct: 6 NNKA--HVAISIGSKIRALRQRLSRTLDEVATTAGISKPFLSQVERGHATPSITSLVGIA 63 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 L + +F D S E F T Sbjct: 64 RALGVTVQYFVDTPTEDKSVRRGSELKYFGFDGT 97 >gi|147673117|ref|YP_001218249.1| hypothetical protein VC0395_A2349 [Vibrio cholerae O395] gi|262166988|ref|ZP_06034706.1| hypothetical protein VIJ_000150 [Vibrio cholerae RC27] gi|146315000|gb|ABQ19539.1| conserved domain protein [Vibrio cholerae O395] gi|227011827|gb|ACP08037.1| hypothetical protein VC395_0008 [Vibrio cholerae O395] gi|262024572|gb|EEY43255.1| hypothetical protein VIJ_000150 [Vibrio cholerae RC27] Length = 69 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI R G++Q+KL I V + E+G + +L I++ L + Sbjct: 9 VGKRIAKMRKSKGLTQDKLALLAEIDRSYVGRIERGEVNITVEKLYQIADTLGCDVKELL 68 >gi|332664458|ref|YP_004447246.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333272|gb|AEE50373.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 352 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 3/110 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+R+ R + G+S + L + + +T Q + KYEKG G++ L +S+ L + FF Sbjct: 6 GQRLTSARKMAGLSLQNLADKMENAVTRQALNKYEKGEMMPGSTVLIRLSKALNVTVDFF 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ-IDDVKVRQKIIEL 122 F S E + +S + + ++ + +++L Sbjct: 66 FSEPDQKVELQSIEFRKKISRLSKTAEVAVIEKARAFLERYLELEHLLQL 115 >gi|291520506|emb|CBK75727.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 97 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 27/59 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R +SQ +L LG T + VQKYE G L I+ +L + Sbjct: 7 IGNRIKQARKAQHLSQTELANRLGKTMRTVQKYESGEIEPSIGILNEIANILNISPAEL 65 >gi|269965492|ref|ZP_06179610.1| conserved hypothetical protein [Vibrio alginolyticus 40B] gi|269829855|gb|EEZ84086.1| conserved hypothetical protein [Vibrio alginolyticus 40B] Length = 518 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 7/73 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G L+ I+EV Sbjct: 13 FLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEVF 72 Query: 67 ESPISFFFDVSPT 79 + ++F D P Sbjct: 73 QKDPAWFLDDEPE 85 >gi|257877770|ref|ZP_05657423.1| transcriptional regulator [Enterococcus casseliflavus EC20] gi|257811936|gb|EEV40756.1| transcriptional regulator [Enterococcus casseliflavus EC20] Length = 72 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R ++QE+L + L I+ +YE G + L +++ + + + ++ Sbjct: 3 HRIRDLREDKDLNQEQLAKLLNISQTTYSRYESGKLDIPTQSLIKLADFYSTSVDYLLNL 62 Query: 77 SP 78 + Sbjct: 63 TD 64 >gi|229521883|ref|ZP_04411300.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TM 11079-80] gi|229340808|gb|EEO05813.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TM 11079-80] Length = 181 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ E+ S F Sbjct: 9 QIANQLKKLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGFEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 F P + S S ++ + T Sbjct: 69 FANDPQLLSSERSFPDDPNMKVHT 92 >gi|254474485|ref|ZP_05087871.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] gi|214028728|gb|EEB69563.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] Length = 204 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 3/106 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K I P VG IR RR L M+ + L + G++ + + E+ L Sbjct: 1 MPQEKTIQEP---KVGPTIRKRRKQLNMTLQALCDASGVSVGYLSQVERDNATPSLGTLA 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 I+ LE + +F S + + ++ + Sbjct: 58 QIAAALEVGLDYFISASKPSDGLTRAGSRPLFALDNSSLRYEALGA 103 >gi|167463651|ref|ZP_02328740.1| predicted transcription regulator, containing DNA-binding HTH domain [Paenibacillus larvae subsp. larvae BRL-230010] Length = 64 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G+SQEKL + LG++ Q + E G I + I + F Sbjct: 3 NRVRELREERGISQEKLAQILGVSRQSIISIENGRYNPSLILAYQIPKYFNKSIEYVF 60 >gi|77412497|ref|ZP_00788797.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae CJB111] gi|77161448|gb|EAO72459.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae CJB111] Length = 358 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 4/113 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I L+R +GM+QE L + L +T + K+E L ++ + + + Sbjct: 1 MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAXPDIDYLILMANLFDISLDDL 60 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 +S + + + + +S D Q + + + +I + Sbjct: 61 VGYQKTLSDDQRNQLIKDLKIKANVLSERDFFQEVKELSKQFPNDFKTLLIMI 113 >gi|320528225|ref|ZP_08029389.1| toxin-antitoxin system, antitoxin component, Xre family [Solobacterium moorei F0204] gi|320131398|gb|EFW23964.1| toxin-antitoxin system, antitoxin component, Xre family [Solobacterium moorei F0204] Length = 86 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I V RI+ R +SQ +L + +G T Q + E G I++ I Sbjct: 16 IKVKNRIKELRKEHKLSQGELADLVGTTRQTITSIEVGKYTASLPLAYKIAKQFSLSIEE 75 Query: 73 FFDVSP 78 FD S Sbjct: 76 VFDFSE 81 >gi|300691862|ref|YP_003752857.1| hypothetical protein RPSI07_2218 [Ralstonia solanacearum PSI07] gi|299078922|emb|CBM10198.1| conserved protein of unknown function [Ralstonia solanacearum PSI07] Length = 182 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G + E L E G+T + K E+G++ + ++ L P F Sbjct: 4 RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLARALGVPAEDLF-GE 62 Query: 78 PTVCSDIS 85 P S I+ Sbjct: 63 PAAASAIT 70 >gi|289551090|ref|YP_003471994.1| hypothetical protein SLGD_01777 [Staphylococcus lugdunensis HKU09-01] gi|289180622|gb|ADC87867.1| hypothetical protein SLGD_01777 [Staphylococcus lugdunensis HKU09-01] Length = 179 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 37/81 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ RM+ ++QE+L E +T + + E +I EVL + S Sbjct: 1 MDIGMKLKNLRMLKNLTQEELAERTDLTKGYISQIESQHASPSMETFLNILEVLGTRPSD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF ++E+ + D Sbjct: 61 FFQEKTKEKVLYTAEDQTIYD 81 >gi|207743984|ref|YP_002260376.1| helix-turn-helix motif protein [Ralstonia solanacearum IPO1609] gi|206595386|emb|CAQ62313.1| putative helix-turn-helix motif protein [Ralstonia solanacearum IPO1609] Length = 122 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 21/133 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ R L ++Q + T Q YE AS L I+ +L +++ Sbjct: 1 MTIGERLKEERERLRLTQPAIASAADTTKQTQHAYETDRTPPKASYLAAIA-ILGVDVAY 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL-------VRS 125 ++ TP + L + + +V++ + L S Sbjct: 60 VITGERA------------LNTARTPMEVALLENY-RHSPAEVQRGVSMLLAQTSGAADS 106 Query: 126 IVSSEKKYRTIEE 138 + KK R+ EE Sbjct: 107 VAGKGKKNRSSEE 119 >gi|197284836|ref|YP_002150708.1| phage repressor [Proteus mirabilis HI4320] gi|194682323|emb|CAR42114.1| putative phage repressor [Proteus mirabilis HI4320] Length = 215 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ RI+ RR+ L ++QE L + L ++ + K+E V LQ +++VLE + Sbjct: 1 MHI--RIKERRLQLSLTQEALAKMLSVSRVSITKWETRVTEPDGENLQALAKVLEVSPEW 58 Query: 73 FFDVSPTVCSDIS 85 + +D Sbjct: 59 LLYGGNSSEADAL 71 >gi|148543259|ref|YP_001270629.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|184152670|ref|YP_001841011.1| hypothetical protein LAR_0015 [Lactobacillus reuteri JCM 1112] gi|227364322|ref|ZP_03848415.1| XRE family transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325683521|ref|ZP_08163037.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|148530293|gb|ABQ82292.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] gi|183224014|dbj|BAG24531.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112] gi|227070635|gb|EEI08965.1| XRE family transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324977871|gb|EGC14822.1| XRE family transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 185 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 36/76 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I R LG++Q+ + + L IT Q + K+E + L +SE+ + Sbjct: 4 GEQILSRCKELGLTQQNVADELHITRQTLSKWENNKSYPDLKLLLALSEIYHVSVDSLLR 63 Query: 76 VSPTVCSDISSEENNV 91 + + S ++ ++ + Sbjct: 64 ENKDLTSFLNRDKASQ 79 >gi|116688222|ref|YP_833845.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116646311|gb|ABK06952.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] Length = 109 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 28/81 (34%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I +GKRI+ R SQE L + + E+G+ L +I L + Sbjct: 16 ISIALGKRIKECRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICYSLNVTL 75 Query: 71 SFFFDVSPTVCSDISSEENNV 91 F V + E Sbjct: 76 GELFAPLDGVSLKPTGERRAN 96 >gi|325845864|ref|ZP_08169062.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481770|gb|EGC84802.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 236 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + VGK I+ R + ++ E+L + + + + KYE G ++ L I++ L+ + Sbjct: 6 NKEVGKLIKAYRKLRKLTLEELAKKIYKSKSTLSKYENGQIQIDIDNLYLIADALDIRVD 65 Query: 72 FFFDVSP 78 Sbjct: 66 KLLYNDD 72 >gi|294678861|ref|YP_003579476.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477681|gb|ADE87069.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 460 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/121 (11%), Positives = 36/121 (29%), Gaps = 4/121 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R G++Q L L I+ + + E + L ++ + F D Sbjct: 7 GVRLKRLREDRGITQASLARALEISPSYLNQIENNQRPLTVPVLLKLNAAFGLDVQLFSD 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 ++ ++ + V + I+ + + + Sbjct: 67 ADEARLIAELRGALADQGAGASLAEVREIAA----NMPAVARAIVAMQARLRDLSDRADA 122 Query: 136 I 136 + Sbjct: 123 L 123 >gi|291559127|emb|CBL37927.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 278 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 10/133 (7%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R GMSQ+ L + + +T Q V ++E G L+ +S+ + I+ Sbjct: 30 ILKLRTERGMSQDDLADKVMVTRQAVSRWENGDTVPNTDTLRLLSKEFDVSINMLLGEPR 89 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV------KVRQKIIEL-VRSIVSS-- 129 + + + LN + + ++I++ V+++V+ Sbjct: 90 KLICQCCGMPMDDDSILGRDKDGTLNEEYCKWCYADGTYTYNDMDELIDVCVKNMVNENF 149 Query: 130 -EKKYRTIEEECM 141 E++ R+ +E + Sbjct: 150 TEEQARSYLKEML 162 >gi|229020917|ref|ZP_04177610.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1273] gi|229022840|ref|ZP_04179361.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1272] gi|228738451|gb|EEL88926.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1272] gi|228740379|gb|EEL90684.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1273] Length = 107 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T S + SE V D +S+ + R F Sbjct: 61 LLHDETTTESHLDSEWTQLVKDAMSSGVSKEQFREF 96 >gi|224824859|ref|ZP_03697966.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224603352|gb|EEG09528.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 182 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R++L R +SQ +L + G+T + E+ S L + E + ++ Sbjct: 1 MDIGPRLKLVRERYKLSQRELAKRAGVTNATISLIEQNRVSPSVSSLVKLLEGIPMSLAD 60 Query: 73 FFDVSPTVCSD 83 FF + Sbjct: 61 FFTFDEPPREN 71 >gi|170016676|ref|YP_001727595.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803533|gb|ACA82151.1| Transcriptional regulator [Leuconostoc citreum KM20] Length = 123 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 5/118 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+L R ++Q +L + + + YE N L I+E L + + + Sbjct: 7 RIKLLRKQKQLTQSELANIISASRMAIANYETNRNTPSLGMLSLIAEALNTTTDYLQGKT 66 Query: 78 PTVCSDISSEENNVMDFISTPDGL---QLNRYFI-QIDDVKVRQKIIELVRSIVSSEK 131 + ++S E +T L QL + Q +Q I +++++ K Sbjct: 67 DSPVRNLSQEAL-PTHPNATRVDLADKQLILSYEGQDLSDDYKQAIFAVLKTMHDGNK 123 >gi|167917945|ref|ZP_02505036.1| DNA-binding protein [Burkholderia pseudomallei BCC215] Length = 187 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 2/103 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSEG 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + + R + I +K++ Sbjct: 64 RDRELITVTRASERTSMG--RASSERVRTYESIAAGVAPKKLL 104 >gi|125622890|ref|YP_001031373.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|124491698|emb|CAL96617.1| Putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|300069628|gb|ADJ59028.1| putative HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 107 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ R + +SQE+L + L I+ Q + K+E G + +L +SE+ + + Sbjct: 1 MEISEIIKENRKLKNLSQEELAKELHISRQSISKWETGKSLPTTDQLILLSEIFDCSLDT 60 Query: 73 FFDVSPTVCSDISSEENN 90 + + E ++ Sbjct: 61 LLKGDKKMEEKVKHEIDD 78 >gi|56965325|ref|YP_177057.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56911569|dbj|BAD66096.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 112 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 37/89 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R+R R ++Q+++ LGIT YE+G N ++L+ ++E I++ Sbjct: 3 ELNDRLRELRKAHQLTQQEVASFLGITESAYGFYEQGRNEPSIAKLKQLAEKYNVSIAYI 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + + + N + T + Sbjct: 63 AGETDIKTAPSDKVKENGSAYTFTNLDEE 91 >gi|89074996|ref|ZP_01161441.1| transcriptional regulator, putative [Photobacterium sp. SKA34] gi|90581632|ref|ZP_01237423.1| transcriptional regulator, putative [Vibrio angustum S14] gi|89049235|gb|EAR54799.1| transcriptional regulator, putative [Photobacterium sp. SKA34] gi|90437215|gb|EAS62415.1| transcriptional regulator, putative [Vibrio angustum S14] Length = 106 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 9/107 (8%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLE 67 D + R++ R +SQ++LG +GI + +YEKG + S L+ I++ L Sbjct: 4 DNPIPVRLKEIRKRAKISQKELGVRVGIDESSASARMNQYEKGKHTPDISTLKKIADELG 63 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 P+++FF + + +S L + I + + Sbjct: 64 VPLNYFFCEDESSAELAIAISK-----LSIKQRKLLLKLIADISNEE 105 >gi|84500123|ref|ZP_00998389.1| ribonucleoside-diphosphate reductase, putative [Oceanicola batsensis HTCC2597] gi|84392057|gb|EAQ04325.1| ribonucleoside-diphosphate reductase, putative [Oceanicola batsensis HTCC2597] Length = 830 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R +G++ ++L G++ + + E G + VL S+ Sbjct: 573 GERLRSARKAVGLTLDELKVKTGLSKSYLSEMENGAKEIQRKHAVGFGPVLGVEPSWLLF 632 Query: 76 VSPTVCSDISS----------EENNVMDFISTPDGLQLNRYFIQIDDVKV 115 +++ + + D + P L+ N Y ++ D + Sbjct: 633 GKENAPETLATTDAAPLQPHGDVVYMQDPLDRPQTLEGNTYKLKWPDSEH 682 >gi|310779002|ref|YP_003967335.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] gi|309748325|gb|ADO82987.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] Length = 179 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 38/90 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R ++QE+L + ++ + + E+ + + L I E L + + Sbjct: 1 MIIGEKIKRLRQGKLLTQEELADRCELSKGFISQLERDLTSPSIATLVDILESLGTNLKE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 FF+ S+++ + + Sbjct: 61 FFNEEEDEKIVFSNDDFFEFEDNDLKYRID 90 >gi|300855914|ref|YP_003780898.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436029|gb|ADK15796.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 119 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 48/110 (43%), Gaps = 8/110 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G ++R R G+S ++L + I+ + E G + L+ I+ LE+P+S+ Sbjct: 4 IGTKLRKIRKATGLSLKQLSTKINGKISISFLSDIENGRSNPSFENLKLIAAALETPVSY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 F + S + ++ + + I+ L + F + ++ + L Sbjct: 64 FIEDSKDSIFSSTIDDADFIHIIN------LLQDFKDWNIEDKKELLFYL 107 >gi|294789533|ref|ZP_06754768.1| DNA-binding protein [Simonsiella muelleri ATCC 29453] gi|294482470|gb|EFG30162.1| DNA-binding protein [Simonsiella muelleri ATCC 29453] Length = 122 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 10/121 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R LG++Q + E G++ + YE+ +++ A +L + + I + Sbjct: 8 GNRLKTERKKLGLTQAQAAEKCGVSARMWGDYERNISQPKAEQLF-LFKNAGIDIDYVMT 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + E + + L+L F Q ++ Q +I + + +EKK Sbjct: 67 G-----KNNNVETFRQPENSLSNKELELLALFRQAS--ELGQAVI--LSAARGAEKKEIQ 117 Query: 136 I 136 Sbjct: 118 T 118 >gi|269838246|ref|YP_003320474.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787509|gb|ACZ39652.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 71 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FD 75 K I+ R G +Q +L +G+T + +E G N AS+L+ ++++ + F Sbjct: 2 KTIKELREARGWTQLELAYRVGVTPATIYNWEAGRNEPKASQLRKLAQIFGVSMDEIDFT 61 Query: 76 VSPTVCSDIS 85 S + Sbjct: 62 PSSETKKAAA 71 >gi|212695792|ref|ZP_03303920.1| hypothetical protein ANHYDRO_00325 [Anaerococcus hydrogenalis DSM 7454] gi|212677225|gb|EEB36832.1| hypothetical protein ANHYDRO_00325 [Anaerococcus hydrogenalis DSM 7454] Length = 236 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + VGK I+ R + ++ E+L + + + + KYE G ++ L I++ L+ + Sbjct: 6 NKEVGKLIKAYRKLRKLTLEELAKKIYKSKSTLSKYENGQIQIDIDNLYLIADALDIRVD 65 Query: 72 FFFDVSP 78 Sbjct: 66 KLLYNDD 72 >gi|198276651|ref|ZP_03209182.1| hypothetical protein BACPLE_02847 [Bacteroides plebeius DSM 17135] gi|198270176|gb|EDY94446.1| hypothetical protein BACPLE_02847 [Bacteroides plebeius DSM 17135] Length = 192 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 3/122 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R +S ++L E G+T +QV + E+ ++ + L I+ L + F Sbjct: 7 IGEKIKSLRTNQEISIQELAERAGLTVEQVSRIEENIDIPSLAPLIKIARALGVRLGTFL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR---YFIQIDDVKVRQKIIELVRSIVSSEK 131 D + + + D I + R ++ + KV + + + I ++++ Sbjct: 67 DDQTSEAGPVICRKGEADDTIGFSNNATHARQHMHYHSLSKSKVDRHMEPFIIDIDANDE 126 Query: 132 KY 133 K Sbjct: 127 KD 128 >gi|170760881|ref|YP_001786959.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407870|gb|ACA56281.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 370 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R ++QE+L +G++ V K+E G + + L I+ I Sbjct: 6 IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGTSYPDITLLPAIATFFNVTIDTLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + + + + N + + + Sbjct: 66 NFKIELSDEEVMDIFNECEKLFSN 89 >gi|148379505|ref|YP_001254046.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932694|ref|YP_001383881.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935321|ref|YP_001387431.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288989|emb|CAL83077.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152928738|gb|ABS34238.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931235|gb|ABS36734.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] Length = 370 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R ++QE+L +G++ V K+E G + + L I+ I Sbjct: 6 IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGTSYPDITLLPAIATFFNVTIDTLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + + + + N + + + Sbjct: 66 NFKIELSDEEVMDIFNECEKLFSN 89 >gi|28379037|ref|NP_785929.1| prophage Lp3 protein 2 [Lactobacillus plantarum WCFS1] gi|28271875|emb|CAD64780.1| prophage Lp3 protein 2 [Lactobacillus plantarum WCFS1] Length = 188 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 3/115 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R +G+SQ +L E L +T Q + YEKG + L+++ + PIS+ Sbjct: 2 NKIKELRQYMGLSQAELAEKLNVTRQSISLYEKGQRVPRINVLKNMEAIFGVPISYI--- 58 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 ++ N++ + Q+ D + + +L + + +K Sbjct: 59 QGQTTYLSPIDKANLVSQKIKFGKDEQLSVLTQVLDDSKKDDVQKLKKQLNDLDK 113 >gi|332976136|gb|EGK13004.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 237 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 10/127 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ ++QE+LG+ + +T + YE G LQ I+EV + I F + Sbjct: 6 RLKKLRLEHKLTQEQLGKKINVTKVSISGYENGTRTPDIETLQKIAEVFDVTIDFLLGRT 65 Query: 78 PTVCSDISSEE-NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 S + + + L L + R + E Sbjct: 66 DQSGVVQSENTFSKNLKRLRIKQNLTLKELATKAKMDHER---------LADLESGKIDP 116 Query: 137 EEECMVE 143 + +++ Sbjct: 117 DLNDIID 123 Score = 35.2 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 46/116 (39%), Gaps = 6/116 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-----SPIS 71 K ++ R+ ++ ++L + +++ E G + + +SE L+ Sbjct: 79 KNLKRLRIKQNLTLKELATKAKMDHERLADLESGKIDPDLNDIIDLSEALDAPEHVVSKG 138 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVRSI 126 F++SP E D IS + ++++D + + + I + ++ + Sbjct: 139 TVFEISPEKLEQNRKELQAKFDLISHKLKDASKQAYVEVDFNERDIKVIRQALKRV 194 >gi|323702211|ref|ZP_08113878.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323532898|gb|EGB22770.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 255 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 49/116 (42%), Gaps = 1/116 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R G++Q +L G+T + + E+G + L+ +SEV+ +F Sbjct: 139 LGYKLKHLREEYGLTQAQLANLAGVTAGLIGQIEQGKVQPSLKTLEKLSEVMGVSPCYFI 198 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 V +S + + + P+ + + + K Q I+ ++ SE Sbjct: 199 MEPGAVDQMVSLMNPELRELLIHPNVQAVLSLVCNL-NEKELQFILNFIQLFKRSE 253 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 35/77 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR+ R MS ++L + +GI+ + + E+G + L+ ++E L P + Sbjct: 74 LGEKIRIIRTENNMSLQELADKIGISLSYLSEIERGTVYPALNTLKRVAEGLGVPATALM 133 Query: 75 DVSPTVCSDISSEENNV 91 ++ + Sbjct: 134 GHEGSLGYKLKHLREEY 150 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 31/89 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +IR R G + + L ++ + + E+G R + ++ L + + Sbjct: 5 GDQIRALREERGYTLQDLARRAKLSLSYLSEIERGSKRPSLKTIDKLAAALNVAKTQLVE 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLN 104 T E+ ++ + +L Sbjct: 65 GEITDSGLSLGEKIRIIRTENNMSLQELA 93 >gi|322377135|ref|ZP_08051627.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] gi|321281848|gb|EFX58856.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] Length = 286 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ +R L +SQ++L E + Q+ + E+G G+ L +S+ L+ + +FF+ + Sbjct: 8 RLKNKRKELKLSQKELAEGI-CEQGQISRMEQGKYSPGSELLFQLSKRLKVSMDYFFEDT 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + + + Y +++ K + Sbjct: 67 EVSSLENIDKFKELSKKFLDEREYESLHYIYELEKSKRAR 106 >gi|295107554|emb|CBL05097.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 451 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 12/112 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G I R G++Q L LG+T V K+E G + + L I+ + Sbjct: 4 VNIGATIARERSAAGVTQGALAAHLGVTKAAVSKWELGQSLPDVALLPRIAAYFGITLDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 F P + D + L+L R F + D ++ ELVR Sbjct: 64 LFAFRPQLTEDEVRDV-----------YLELCRLFAE-DAGAAYARMDELVR 103 >gi|291537564|emb|CBL10676.1| Helix-turn-helix [Roseburia intestinalis M50/1] gi|291560441|emb|CBL39241.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] Length = 209 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R++ RR+ L ++Q + E +G+T + +YE G + +SE L + + Sbjct: 10 IGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ + + QL + +D + ++ +++ Sbjct: 70 KGETDEYETDITDKRELQIRDAMGDILEQLPLALTKEEDAFSKDLLLLMLKQ 121 >gi|317131466|ref|YP_004090780.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469445|gb|ADU26049.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 251 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K N + K +R G +Q+ + + +G+T Q V +++ G + + Sbjct: 1 MADERKNENRIFA---KHLRELLDNAGHTQQDVADYVGVTRQAVAQWKDGKTIPDINNFR 57 Query: 61 HISEVLESPISFFFDVSPTVCSD 83 ++ E P + + + + Sbjct: 58 ALARFFEVPYEYLIGDTESRVRE 80 >gi|262171043|ref|ZP_06038721.1| transcriptional regulator YidN, Cro/CI family [Vibrio mimicus MB-451] gi|261892119|gb|EEY38105.1| transcriptional regulator YidN, Cro/CI family [Vibrio mimicus MB-451] Length = 217 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 42/93 (45%), Gaps = 1/93 (1%) Query: 6 KIPNPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 ++ + + + ++++ R G+S + + G++ + + E+G + + L I+ Sbjct: 37 RMTDAMFKSQIANQLKMLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIAS 96 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 LE+ S FF P + S S ++ + T Sbjct: 97 GLEASFSAFFANDPQLLSSERSFPDDPNMKVHT 129 >gi|258621267|ref|ZP_05716301.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM573] gi|258586655|gb|EEW11370.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM573] Length = 211 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 42/93 (45%), Gaps = 1/93 (1%) Query: 6 KIPNPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 ++ + + + ++++ R G+S + + G++ + + E+G + + L I+ Sbjct: 31 RMTDAMFKSQIANQLKMLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIAS 90 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 LE+ S FF P + S S ++ + T Sbjct: 91 GLEASFSAFFANDPQLLSSERSFPDDPNMKVHT 123 >gi|223985090|ref|ZP_03635186.1| hypothetical protein HOLDEFILI_02491 [Holdemania filiformis DSM 12042] gi|223962912|gb|EEF67328.1| hypothetical protein HOLDEFILI_02491 [Holdemania filiformis DSM 12042] Length = 136 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R GM+Q +L + +T + V K+E+ ++ L ++E+LE + Sbjct: 9 GMVIASLRKAQGMTQAELAAKMQVTDKAVSKWERDLSCPDIQSLPRLAEILEVSVEELMQ 68 Query: 76 VSPTVCSDI 84 S + Sbjct: 69 GETRPASSV 77 >gi|222153931|ref|YP_002563108.1| DNA-binding phage protein [Streptococcus uberis 0140J] gi|222114744|emb|CAR43890.1| putative DNA-binding phage protein [Streptococcus uberis 0140J] Length = 233 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/87 (12%), Positives = 32/87 (36%), Gaps = 1/87 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R ++Q++L + L I+ + + +EKG + + + +++ + + + Sbjct: 2 NRIKELREEKNLTQQELADILDISKRTLGYWEKGKQ-IKPDKAKQLADYFKVTVGYLLGY 60 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQL 103 + + L Sbjct: 61 TNLGVGSRLKQLRLNSGLTIEKVCNDL 87 Score = 40.2 bits (92), Expect = 0.088, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 2/90 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR--LQHISEVLESPISF 72 VG R++ R+ G++ EK+ L I K + + + + Q I++ +++ Sbjct: 65 VGSRLKQLRLNSGLTIEKVCNDLKIEDLDYWKLWETQDNITFGKELAQEIADYFSVDVNY 124 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + V ++ SS E N +F+ + Sbjct: 125 LLGKTNIVNTNFSSIEQNDKEFLYSKKFKD 154 >gi|307067495|ref|YP_003876461.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|306409032|gb|ADM84459.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] Length = 156 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 35/95 (36%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G+ IR R G +QE + G+ + E G + + I++ L + Sbjct: 2 IKKELGQEIRKLRTARGFTQETFSKACGLDRTYIADVELGKRNISIENIDKIAKGLAITL 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F + + I N + + L +++ Sbjct: 62 PELFKFNSPIQKIIILNINGEQFILESDTELTMDK 96 >gi|119962079|ref|YP_946843.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119948938|gb|ABM07849.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 191 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ + + +G RIR R ++ E++ + G+T + + E+ + + L + +VL Sbjct: 8 PSNIPVAIGSRIRAARQAQRLTIEQVADATGLTKGFLSRVERDLTSPSVASLVTLCQVLS 67 Query: 68 SPISFFF 74 + F Sbjct: 68 VSVGDLF 74 >gi|332968066|gb|EGK07153.1| XRE family transcriptional regulator [Desmospora sp. 8437] Length = 152 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 42/112 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R+ M QE L +GI+ + YE+G L+ I++ F Sbjct: 12 LGQRLRTLRLEKKMRQEDLAREIGISKSAIGMYERGEREPSLILLREIADFFRVSADFLL 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 S + + L R + D + + +K + V+ + Sbjct: 72 GRSDRASFPSNLRRKSDPPGADGNLKNFLTRKDLHWDQIPLAKKELRAVKEL 123 >gi|332362850|gb|EGJ40643.1| XRE family transcriptional regulator [Streptococcus sanguinis SK49] Length = 225 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLAQASIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + T Sbjct: 65 TST 67 >gi|329767792|ref|ZP_08259308.1| hypothetical protein HMPREF0428_01005 [Gemella haemolysans M341] gi|328838893|gb|EGF88487.1| hypothetical protein HMPREF0428_01005 [Gemella haemolysans M341] Length = 66 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 7/64 (10%), Positives = 25/64 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q ++ + + I + +E ++ ++++ ++ Sbjct: 3 NRLKEARKARGLTQNEVCKLVFIDQNSLSLFENNHRLPKLDMVEKLAKLYNVNPAWLVGW 62 Query: 77 SPTV 80 S Sbjct: 63 SDEK 66 >gi|296116502|ref|ZP_06835113.1| putative transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295976968|gb|EFG83735.1| putative transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 120 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 14/118 (11%) Query: 15 VGKRIRLRRMI------LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + R+ R +S +++ + +GI+ + YE+G +R G L ++ Sbjct: 5 IASRLTALRRALAEKLGRKVSAQEVADAVGISRSTLSGYERGHDRPGRETLLALATYYSV 64 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + D ++ L + D R+ + L+RS+ Sbjct: 65 SVDYLASGEMPAVQ--------HPDNVAQNGEEALLLALWRRMDEDQRRSWLGLLRSM 114 >gi|266622653|ref|ZP_06115588.1| putative helix-turn-helix protein [Clostridium hathewayi DSM 13479] gi|288865608|gb|EFC97906.1| putative helix-turn-helix protein [Clostridium hathewayi DSM 13479] Length = 195 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I R G++Q+++ + LGI+ + V K+E+G+ S + +S VL + I Sbjct: 6 VGRLILQFRKEKGLTQQQVADLLGISNKTVSKWERGLGCPDVSLWEGLSTVLGADIIKLL 65 Query: 75 DVS 77 Sbjct: 66 QGE 68 >gi|222032723|emb|CAP75462.1| Repressor protein [Escherichia coli LF82] Length = 216 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L ++ L+ + Sbjct: 7 GERIRARRKELKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALANALKCSPDYLIK 66 Query: 76 VSPTVCS 82 ++ + Sbjct: 67 GEESLSN 73 >gi|160897146|ref|YP_001562728.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160362730|gb|ABX34343.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 156 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 7/121 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-F 73 V R+R R +LG+ Q +L I+ YEKG + ++ I Sbjct: 12 VATRLREARELLGLKQAELATLTAISRSTQIAYEKGTTEPT-TGYLQAAQRAGLDIDAVL 70 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN----RYFIQIDDVKVRQKII-ELVRSIVS 128 F + D++ + F R K+I +L ++ + Sbjct: 71 FGPREEIDHAAPPPARGQPDWVLIQECCDTVDFFCLRFAPTCPASYRWKLIRQLYEALSA 130 Query: 129 S 129 + Sbjct: 131 A 131 >gi|18310949|ref|NP_562883.1| DNA-binding protein [Clostridium perfringens str. 13] gi|110801118|ref|YP_696646.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|168204849|ref|ZP_02630854.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|168208668|ref|ZP_02634293.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|168212998|ref|ZP_02638623.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|168215593|ref|ZP_02641218.1| DNA-binding protein [Clostridium perfringens NCTC 8239] gi|169343522|ref|ZP_02864521.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|182624367|ref|ZP_02952151.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|18145631|dbj|BAB81673.1| conserved hypothetical protein [Clostridium perfringens str. 13] gi|110675765|gb|ABG84752.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|169298082|gb|EDS80172.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|170663587|gb|EDT16270.1| DNA-binding protein [Clostridium perfringens E str. JGS1987] gi|170713177|gb|EDT25359.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|170715478|gb|EDT27660.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|177910370|gb|EDT72747.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|182382433|gb|EDT79912.1| DNA-binding protein [Clostridium perfringens NCTC 8239] Length = 179 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R+ ++QE+L ++ + + E + + L I ++L + ++ Sbjct: 1 MEIGDKIRRLRVAKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILDILGTNLTE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 FF S ++ + L Sbjct: 61 FFSEDTNEKIAFSKDDMFETENEELKYNLM 90 >gi|154244507|ref|YP_001415465.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154158592|gb|ABS65808.1| transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 117 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 4/117 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + P+ + +R++ R + G SQE+LG G+ + +E G + L+ Sbjct: 1 MTDNESPSDIFR---ERLKSARELRGYSQEQLGARAGMPASSIAHFETGR-KPSFDSLRR 56 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++ LE + + + + T ++ + F++I + +K Sbjct: 57 LANALEITTDYLLGRVDSPELAQAGDPLFRDIGKLTGSDREIAKDFLEILARRSAKK 113 >gi|83942889|ref|ZP_00955349.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] gi|83954060|ref|ZP_00962780.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83841097|gb|EAP80267.1| DNA-binding protein, putative [Sulfitobacter sp. NAS-14.1] gi|83845897|gb|EAP83774.1| DNA-binding protein, putative [Sulfitobacter sp. EE-36] Length = 132 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 11/123 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R M+Q L + LGI ++ +E ++ A+RL ++ VL + + + Sbjct: 16 GDRVAAARENADMTQAALAKRLGIKQSTLRGWEDDLSEPRANRLSTLAGVLGVSMMWLIN 75 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + ++ D ++L +R +++ + EKK R Sbjct: 76 GEGEGID--APDDTAATDANIKEALIEL---------RDMRADLLKRAEQMGRLEKKLRR 124 Query: 136 IEE 138 I + Sbjct: 125 IFK 127 >gi|328887759|emb|CAJ69818.2| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 382 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR-LQHISEVLESPISFFF 74 G+R++ R+ GM+ +L E + Q V YE ++ + ++ I+ VL P+ FF Sbjct: 7 GERLKKARIYRGMTVAELAERIDCQRQTVSMYENNKSKPNDNNVVKRIARVLGFPVKFFL 66 Query: 75 D 75 + Sbjct: 67 E 67 >gi|307707493|ref|ZP_07643975.1| transcriptional activator [Streptococcus mitis NCTC 12261] gi|307616445|gb|EFN95636.1| transcriptional activator [Streptococcus mitis NCTC 12261] Length = 287 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R++R LG+SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRVKRKELGLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + S++S+ + + + L Y +I+ Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYDDL-EYIYRIE 98 >gi|301793711|emb|CBW36098.1| Transcriptional regulator [Streptococcus pneumoniae INV104] Length = 290 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ +R L +SQ++L E + Q+ + E+G G+ L +S+ L+ + +FF+ + Sbjct: 8 RLKNKRKELKLSQKELAEGI-CEQGQISRMEQGKYSPGSELLFQLSKRLKVSMDYFFEDT 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + + + Y +++ K + Sbjct: 67 EVSSLENIDKFKELSKKFLDEREYESLHYIYELEKSKRAR 106 >gi|302523303|ref|ZP_07275645.1| regulatory protein [Streptomyces sp. SPB78] gi|318062276|ref|ZP_07980997.1| regulatory protein [Streptomyces sp. SA3_actG] gi|318080822|ref|ZP_07988154.1| regulatory protein [Streptomyces sp. SA3_actF] gi|302432198|gb|EFL04014.1| regulatory protein [Streptomyces sp. SPB78] Length = 219 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+R R GM+ L GI+ + + E G+ R L ++ + Sbjct: 36 VGERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELV 95 Query: 75 DVSPTVCSDISSEE 88 P + +E Sbjct: 96 GTRPVADPRVRAEP 109 >gi|255262941|ref|ZP_05342283.1| DNA-binding protein [Thalassiobium sp. R2A62] gi|255105276|gb|EET47950.1| DNA-binding protein [Thalassiobium sp. R2A62] Length = 209 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 37/89 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G+ ++ R M+ +L G++ + K E G + LQ +++ L Sbjct: 19 NVLEVAIGREVKGFRRRQNMTVAELSAMTGLSIGMLSKIENGNTSPSLTTLQTLADALTV 78 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFIST 97 PI+ FF + + ++ Sbjct: 79 PITSFFSGFEEKRMAVHTPAGEGVEMERD 107 >gi|253681993|ref|ZP_04862790.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum D str. 1873] gi|253561705|gb|EES91157.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum D str. 1873] Length = 432 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 1/93 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR LGM+ + L IT Q+ E G + L++++ L I + Sbjct: 6 LGEKIKRRRKELGMTLKDL-AGDRITPGQISLVESGKSNPSMDLLEYLANSLNISIEYLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + T I N+ + + L L + Sbjct: 65 ESEETQAEKICIYYENMSESHILNNQLNLAEQY 97 >gi|225378210|ref|ZP_03755431.1| hypothetical protein ROSEINA2194_03870 [Roseburia inulinivorans DSM 16841] gi|225209941|gb|EEG92295.1| hypothetical protein ROSEINA2194_03870 [Roseburia inulinivorans DSM 16841] Length = 201 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I R G +Q++L E L I+ + + K+E+G S L + LE ++ Sbjct: 4 IKIGKFIADERKRKGYTQKQLSEKLAISDKTISKWERGNGFPEVSLLLPLCNELEITVNE 63 Query: 73 FFDVSPTVCSDISSEENNVM 92 + + M Sbjct: 64 LLSGERVSEEEYLKKAEENM 83 >gi|167746155|ref|ZP_02418282.1| hypothetical protein ANACAC_00851 [Anaerostipes caccae DSM 14662] gi|167654670|gb|EDR98799.1| hypothetical protein ANACAC_00851 [Anaerostipes caccae DSM 14662] Length = 180 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 5/114 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ V K I+ R +S E L + G++ + + E+G S L IS ++ P Sbjct: 1 MNLIVAKNIKRLREKQKLSMEALSKLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPF 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + + ++ + G + + D R+ + ++ Sbjct: 61 DAL---TVRPKTPYEIIKTADIEPLLEDSGR--VKNYPLFPDDADRKFAVYYLK 109 >gi|153007564|ref|YP_001368779.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188] gi|151559452|gb|ABS12950.1| putative phage repressor [Ochrobactrum anthropi ATCC 49188] Length = 235 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 31/70 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R G +Q++L + GI V ++E + G+ +L ++E+L ++ Sbjct: 4 IGDRIRRARTQKGFTQQQLADHFGIARVSVTQWENNTTQPGSDKLIGLTELLGGDAEWYI 63 Query: 75 DVSPTVCSDI 84 Sbjct: 64 TGHGMPPISD 73 >gi|15830918|ref|NP_309691.1| hypothetical protein ECs1664 [Escherichia coli O157:H7 str. Sakai] gi|168756532|ref|ZP_02781539.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|168771061|ref|ZP_02796068.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|168782527|ref|ZP_02807534.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|168787669|ref|ZP_02812676.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC869] gi|195938823|ref|ZP_03084205.1| hypothetical protein EscherichcoliO157_20767 [Escherichia coli O157:H7 str. EC4024] gi|208806950|ref|ZP_03249287.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208815716|ref|ZP_03256895.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208822642|ref|ZP_03262961.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209396624|ref|YP_002270109.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4115] gi|217328417|ref|ZP_03444499.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. TW14588] gi|261224908|ref|ZP_05939189.1| hypothetical protein EscherichiacoliO157_09974 [Escherichia coli O157:H7 str. FRIK2000] gi|261257236|ref|ZP_05949769.1| hypothetical protein EscherichiacoliO157EcO_15627 [Escherichia coli O157:H7 str. FRIK966] gi|291281508|ref|YP_003498326.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. CB9615] gi|13361128|dbj|BAB35087.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|188999971|gb|EDU68957.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189356349|gb|EDU74768.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189360126|gb|EDU78545.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189372536|gb|EDU90952.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC869] gi|208726751|gb|EDZ76352.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208732364|gb|EDZ81052.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208738127|gb|EDZ85810.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209158024|gb|ACI35457.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4115] gi|217318844|gb|EEC27270.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. TW14588] gi|290761381|gb|ADD55342.1| Helix-turn-helix domain protein [Escherichia coli O55:H7 str. CB9615] gi|320638144|gb|EFX07905.1| hypothetical protein ECO5101_18657 [Escherichia coli O157:H7 str. G5101] gi|320643564|gb|EFX12729.1| hypothetical protein ECO9389_18000 [Escherichia coli O157:H- str. 493-89] gi|320648883|gb|EFX17507.1| hypothetical protein ECO2687_10168 [Escherichia coli O157:H- str. H 2687] gi|320654469|gb|EFX22513.1| hypothetical protein ECO7815_15353 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320664959|gb|EFX32089.1| hypothetical protein ECOSU61_14426 [Escherichia coli O157:H7 str. LSU-61] gi|326346440|gb|EGD70177.1| transcriptional regulator, XRE family [Escherichia coli O157:H7 str. 1125] Length = 194 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 44/115 (38%), Gaps = 1/115 (0%) Query: 4 NKKIPNPV-DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +K+ N + D ++ + + R ++ +L + G++ + K E+G + A+ L + Sbjct: 2 DKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRL 61 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + L +S F + + + +I G+ ++ + Sbjct: 62 ANALNITLSKLFAELEMQQNSLVLLADQQQHWIDEETGITRWSLSPAGACPELIK 116 >gi|307295149|ref|ZP_07574989.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306496398|gb|EFM65972.1| helix-turn-helix protein [Enterococcus faecalis TX0411] Length = 128 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 19/121 (15%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 27 IREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLDNVD 86 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIEE 138 + + + + + I + ++ + E + + + Sbjct: 87 IDYEE------------------EFLALYRSLSTEDAIRTI-DYMKLLKRQENERNQLLK 127 Query: 139 E 139 + Sbjct: 128 D 128 >gi|302385593|ref|YP_003821415.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302196221|gb|ADL03792.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 68 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + G+RI++ R LG+SQEK + + E G + ++ I+ L + Sbjct: 2 ITKEFGQRIKILRNGLGISQEKFALSIDMDRTYYASVESGKRNISIKNIEKIANGLGITL 61 Query: 71 SFFFDV 76 F Sbjct: 62 EELFKG 67 >gi|299065294|emb|CBJ36462.1| putative transcription regulator protein [Ralstonia solanacearum CMR15] Length = 109 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+ +G+RI+L R SQE L + + E+G+ L +I L Sbjct: 13 PAPILSALGERIKLCRHAADKSQETLAFEALVDRTYISSIERGIANPSIETLANICYALN 72 Query: 68 SPISFFFDVSP 78 ++ F Sbjct: 73 VTLAELFGPMD 83 >gi|260437982|ref|ZP_05791798.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|292809608|gb|EFF68813.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] Length = 129 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 1/97 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S + L E GI+ + +YE +++ + L+ I VL S Sbjct: 1 MIIGQKIKELRIKKGISVDALAEATGISRATLYRYENASIHKIPVACLESICRVLGVKTS 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + + + + N + Sbjct: 61 DLMEDTDSNQLEELPQAFNNPQEALSFILKMPALAAY 97 >gi|257452737|ref|ZP_05618036.1| MerR family transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|257466598|ref|ZP_05630909.1| MerR family transcriptional regulator [Fusobacterium gonidiaformans ATCC 25563] gi|315917753|ref|ZP_07913993.1| transcriptional regulator [Fusobacterium gonidiaformans ATCC 25563] gi|317059278|ref|ZP_07923763.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|313684954|gb|EFS21789.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|313691628|gb|EFS28463.1| transcriptional regulator [Fusobacterium gonidiaformans ATCC 25563] Length = 182 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 39/92 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I+ R +S +L + ++ + + E+G L+ I+ L+ +S+ Sbjct: 1 MSIGEKIKKSRNEKSLSLRELAVKVDLSASFLSQIEQGKASPSIENLKKIATALDVRVSY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + ++ NV S ++ Sbjct: 61 LIEDDEIQKNVDFVKKENVKYIESRDSNTKMA 92 >gi|317499111|ref|ZP_07957390.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|291524086|emb|CBK89673.1| Helix-turn-helix [Eubacterium rectale DSM 17629] gi|316893631|gb|EFV15834.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 209 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R++ RR+ L ++Q + E +G+T + +YE G + +SE L + + Sbjct: 10 IGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ + + QL + +D + ++ +++ Sbjct: 70 KGETDEYETDITDKRELQIRDAMGDILEQLPLALTKEEDAFSKDLLLLMLKQ 121 >gi|221213709|ref|ZP_03586683.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] gi|221166498|gb|EED98970.1| transcriptional regulator, XRE family [Burkholderia multivorans CGD1] Length = 81 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 26/68 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R G SQEKL G+ V E+G + + ++E L P S Sbjct: 10 GKRLVELRKAKGWSQEKLALESGLARSYVGGIERGQRNIALYNICVLAETLNVPPSDMLA 69 Query: 76 VSPTVCSD 83 + Sbjct: 70 FESGHGKN 77 >gi|218283651|ref|ZP_03489613.1| hypothetical protein EUBIFOR_02207 [Eubacterium biforme DSM 3989] gi|218215711|gb|EEC89249.1| hypothetical protein EUBIFOR_02207 [Eubacterium biforme DSM 3989] Length = 145 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 35/81 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R+ G+SQE+ GE +GI V K E G N + L I + Sbjct: 22 EIGTRVKKVRLRKGISQEQFGEIIGIKKAAVSKIENGENSLSKGNLLAICRQFNVNKEWL 81 Query: 74 FDVSPTVCSDISSEENNVMDF 94 + + + + S E+ F Sbjct: 82 INGNGEMFTPKSKEDEIRNFF 102 >gi|187250867|ref|YP_001875349.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Elusimicrobium minutum Pei191] gi|186971027|gb|ACC98012.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Elusimicrobium minutum Pei191] Length = 214 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 38/81 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I R L ++Q++L + +G+ + ++E ++ +S+ L + Sbjct: 1 MSIGKKILQARRELNLTQKELAQKIGLPGSTIARWETDSFSPSPKNIEKLSKALGREYKY 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 F++ + + + + D Sbjct: 61 FYETQEDIFTVFKKAKGEIRD 81 >gi|75758330|ref|ZP_00738454.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228905699|ref|ZP_04069624.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|228976517|ref|ZP_04136972.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|229148299|ref|ZP_04276584.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|74494192|gb|EAO57284.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228635165|gb|EEK91710.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|228783178|gb|EEM31302.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228853957|gb|EEM98690.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|326943902|gb|AEA19790.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar chinensis CT-43] Length = 130 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 45/126 (35%), Gaps = 5/126 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IR R + G+S+++ + + + V +E G RL I++ S Sbjct: 7 GKNIRKLRAMKGLSRKEFAQAINTPYSTVTSWENGDKVPKIERLPTIAKFFNVSESRLLH 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVRSIVSSEKK 132 + + + + L + + + ++ ++I+ + + + + Sbjct: 67 HQMSDNEILEKDSSETDPI--ERMAQILIEKYRNVPEEHKPRIEKEILRMAQLLEIEIEM 124 Query: 133 YRTIEE 138 EE Sbjct: 125 QSQHEE 130 >gi|22538172|ref|NP_689023.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|76798585|ref|ZP_00780814.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] gi|22535081|gb|AAN00896.1|AE014283_15 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|76586050|gb|EAO62579.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 18RS21] Length = 358 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 45/113 (39%), Gaps = 4/113 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I L+R +GM+QE L + L +T + K+E + L ++ + + + Sbjct: 1 MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDL 60 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 +S + + + + +S D Q + + + +I + Sbjct: 61 VGYQKTLSDDQRNQLIKDLKIKANVLSERDFFQEVKELSKQFPNDFKTLLIMI 113 >gi|332204509|gb|EGJ18574.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 290 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 44/100 (44%), Gaps = 1/100 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ +R L +SQ++L E + Q+ + E+G G+ L +S+ L+ + +FF+ + Sbjct: 8 RLKNKRKELKLSQKELAEGI-CEQGQISRMEQGKYSPGSELLFQLSKRLKVSMDYFFEDT 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + + + Y +++ K + Sbjct: 67 EVSSLENIDKFKELSKKFLDEREYESLHYIYELEKSKRAR 106 >gi|322434064|ref|YP_004216276.1| Cupin 2 conserved barrel domain protein [Acidobacterium sp. MP5ACTX9] gi|321161791|gb|ADW67496.1| Cupin 2 conserved barrel domain protein [Acidobacterium sp. MP5ACTX9] Length = 267 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ M +LG G++ + + E G L I+ V ++F Sbjct: 43 KRIGERIKYLRLKKSMGLVELGRHTGLSASFLSQLETGRVVPTLRNLARIAMVFSKDLNF 102 Query: 73 FFDVSPTV 80 FF+ P Sbjct: 103 FFEPEPQT 110 >gi|295132594|ref|YP_003583270.1| helix-turn-helix domain-containing protein [Zunongwangia profunda SM-A87] gi|294980609|gb|ADF51074.1| helix-turn-helix domain-containing protein [Zunongwangia profunda SM-A87] Length = 73 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R G+ Q+ I Q+ E G L I++ LE P+ Sbjct: 12 LGARIKQLREEKGLDQKTFAFDCEIGRTQLYMIENGKTNPRLLTLIKIAKGLEVPLKKLI 71 Query: 75 D 75 D Sbjct: 72 D 72 >gi|210614628|ref|ZP_03290239.1| hypothetical protein CLONEX_02453 [Clostridium nexile DSM 1787] gi|210150618|gb|EEA81627.1| hypothetical protein CLONEX_02453 [Clostridium nexile DSM 1787] Length = 118 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 42/98 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 1 MPIDDLTALGQKMREARKKKDLTQQELADLSHVSVKQIASIEKGQINPSYLILKALAKVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + + + + +++ + + L Sbjct: 61 PLSLDTLINPNVSPEDEGANQMKMLYCSCPSEMRETLL 98 >gi|198449275|ref|YP_002221429.1| hypothetical protein KS10_gp13 [Burkholderia phage KS10] gi|206559960|ref|YP_002230724.1| putative DNA-binding phage protein [Burkholderia cenocepacia J2315] gi|197725436|gb|ACH72932.1| gp13 [Burkholderia phage KS10] gi|198036001|emb|CAR51894.1| putative DNA-binding phage protein [Burkholderia cenocepacia J2315] Length = 156 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R L +SQ + G+T YE + L I++ I + Sbjct: 5 VGARLREERTRLNLSQSAFADVAGVTKTTQGNYETNKRSPDSIYLAAIAQ-HGVDIQYVV 63 Query: 75 DVSPTVCSDISSEE 88 S + + Sbjct: 64 TGQRAAHSGFAVDT 77 >gi|167768466|ref|ZP_02440519.1| hypothetical protein CLOSS21_03025 [Clostridium sp. SS2/1] gi|291086900|ref|ZP_06344824.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|167709990|gb|EDS20569.1| hypothetical protein CLOSS21_03025 [Clostridium sp. SS2/1] gi|291077343|gb|EFE14707.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 232 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R++ RR+ L ++Q + E +G+T + +YE G + +SE L + + Sbjct: 33 IGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 92 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ + + QL + +D + ++ +++ Sbjct: 93 KGETDEYETDITDKRELQIRDAMGDILEQLPLALTKEEDAFSKDLLLLMLKQ 144 >gi|167563856|ref|ZP_02356772.1| DNA-binding protein [Burkholderia oklahomensis EO147] gi|167570993|ref|ZP_02363867.1| DNA-binding protein [Burkholderia oklahomensis C6786] Length = 195 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 4/104 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+ + +R+R R + G S + L E ++ + E+ + A L+ ++ L Sbjct: 2 DVNQLIARRVRALRDLRGYSLDALAERSKVSRSNISLIERAQSSPTAVVLERLANALGVS 61 Query: 70 ISFFFDVS----PTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++ F+ + E+ D S L+ Sbjct: 62 LASLFEDDRAAQAASPLSRAIEQPVWKDPASGYVRRSLSPAAPS 105 >gi|126651869|ref|ZP_01724070.1| transcriptional regulator [Bacillus sp. B14905] gi|126591337|gb|EAZ85445.1| transcriptional regulator [Bacillus sp. B14905] Length = 188 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 36/92 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + GK++ R GMS ++L ++ + + E+G + I+E L + +S Sbjct: 1 MEFGKQVNFIRKKRGMSLQELSALSKVSTSMLSQIERGGKNPTITVACQIAEALNTTLSA 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D T + +E + F + + Sbjct: 61 LLDSQETREIVVIRKEKRPVYFDESSGFQRHL 92 >gi|160879054|ref|YP_001558022.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427720|gb|ABX41283.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 179 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 33/68 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R+ ++QE+L + ++ + + E+ + + L I + L + + Sbjct: 1 MKIGAKIKELRVQKSLTQEELADRAELSKGFISQLERDITSPSIATLVDILQCLGTNLEA 60 Query: 73 FFDVSPTV 80 FF + + Sbjct: 61 FFTDTTSE 68 >gi|89896521|ref|YP_520008.1| hypothetical protein DSY3775 [Desulfitobacterium hafniense Y51] gi|89335969|dbj|BAE85564.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 63 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 I+ R +SQE L + ++ Q + E S ++EVL+ + F+ Sbjct: 3 NNIKQHRKEKNISQEDLAKRCNVSRQTINAIENNKYDPTLSLAFKLAEVLQVTVDELFN 61 >gi|28900055|ref|NP_799710.1| hypothetical protein VPA0200 [Vibrio parahaemolyticus RIMD 2210633] gi|260362248|ref|ZP_05775227.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus K5030] gi|260880630|ref|ZP_05892985.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus AN-5034] gi|308095335|ref|ZP_05905081.2| transcriptional regulator, XRE family [Vibrio parahaemolyticus Peru-466] gi|28808338|dbj|BAC61543.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308086815|gb|EFO36510.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus Peru-466] gi|308092173|gb|EFO41868.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus AN-5034] gi|308115606|gb|EFO53146.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus K5030] Length = 518 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 7/73 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G L+ I+EV Sbjct: 13 FLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEVF 72 Query: 67 ESPISFFFDVSPT 79 + ++F D P Sbjct: 73 QKDPAWFLDDEPE 85 >gi|115523415|ref|YP_780326.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517362|gb|ABJ05346.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisA53] Length = 480 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 33/82 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R +G+SQ ++ E LGI+ + E+ V A L ++E + + Sbjct: 9 LFVGPRFRRLRQQMGLSQTQMAEGLGISPSYINLIERNQRPVTAQILLRLAENYDLDLRD 68 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 +E + F Sbjct: 69 LATADEDRFFAELNEIFSDPLF 90 >gi|330465134|ref|YP_004402877.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328808105|gb|AEB42277.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 195 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 2/94 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R G+S L G+ + E G L I+ L P++ Sbjct: 27 AIGRRVRALREARGISLSALARQAGVGKATLSGLENGTRNPTLETLYAITAQLGVPLTAV 86 Query: 74 FD--VSPTVCSDISSEENNVMDFISTPDGLQLNR 105 S + + F + +L R Sbjct: 87 LSAPASGATVRGAAVSATLLEVFEDSDVTYELYR 120 >gi|322507551|gb|ADX03005.1| Putative phage repressor [Acinetobacter baumannii 1656-2] Length = 224 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R LG++Q + GI+ + + +EK ++ A +L +S+ +++ Sbjct: 8 MIGLRIKEERTRLGLTQPDFAQIAGISKRTLIDWEKDLSSPNAVQLSALSQ-AGVDVNYI 66 Query: 74 FDVSP 78 + Sbjct: 67 ITGNK 71 >gi|295093412|emb|CBK82503.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 69 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R LG++Q+++G + + Q + + E+G + I++V + F Sbjct: 5 NKLKEYRAKLGVNQQEMGVLVQTSRQTISQIERGDYSPSVTLALKIAKVCGVSVEDIFQY 64 Query: 77 SPTVC 81 Sbjct: 65 EDDKE 69 >gi|269793680|ref|YP_003313135.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269095865|gb|ACZ20301.1| predicted transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 190 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 33/82 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D V +RIR R+ G + + L ++ + + E G R+ +L I++ L + + Sbjct: 6 LDDIVRQRIRGLRLARGWTLDALASRCFLSASTLSRIETGHRRIALDQLVPIAQALGTTL 65 Query: 71 SFFFDVSPTVCSDISSEENNVM 92 + I E + Sbjct: 66 DQLVEPEDDEDVVIRPEPETMP 87 >gi|239630752|ref|ZP_04673783.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527035|gb|EEQ66036.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 190 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 39/96 (40%), Gaps = 6/96 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G + +L + G+ + YE+G A L+ ++++ E+ ++ + Sbjct: 6 NRIKAFRYEKGWTLSQLAKKAGMPITTLSNYERGTRTPSAEVLKKLADIFETNTAYLMGL 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + +++ ++F F ++ + Sbjct: 66 TDAPAETLTNSNLKNIEFEVRSG------AFQRLAN 95 >gi|205375367|ref|ZP_03228157.1| XRE family transcriptional regulator [Bacillus coahuilensis m4-4] Length = 111 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 VG RIR+ R ++ ++L ++ + E+G L I++ L + Sbjct: 1 MVGNRIRMLREERKLTMQELAVRSKVSKSYISSIERGLQKNPSIRILLRIADTLHVELED 60 Query: 73 FFDVSPTVCSDISSEEN 89 FD + + D ++ Sbjct: 61 LFDSTASRFEDTILDQE 77 >gi|182415256|ref|YP_001820322.1| XRE family transcriptional regulator [Opitutus terrae PB90-1] gi|177842470|gb|ACB76722.1| transcriptional regulator, XRE family [Opitutus terrae PB90-1] Length = 76 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+ IR R LG+SQE E + V + E+G + + + I+ + S Sbjct: 10 RALGEAIRAGRKTLGLSQEDFAERCDVHRTYVGQVERGEKNISFTNVLRIARAIGQKPSV 69 Query: 73 FF 74 Sbjct: 70 LL 71 >gi|168214614|ref|ZP_02640239.1| helix-turn-helix domain protein [Clostridium perfringens CPE str. F4969] gi|170713909|gb|EDT26091.1| helix-turn-helix domain protein [Clostridium perfringens CPE str. F4969] Length = 123 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 40/119 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R LG++Q++ G+ + + + E G + + I E + + Sbjct: 3 KRVKELRKRLGLTQDQFGKKINMGRSNLSLIESGKVNISPRVVNDICEKFQVNEEWLRSG 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + E I K+ ++ E V I+ + K + Sbjct: 63 KGEIFKIVDDNEQFNKTLAEWLVNCDEITKKTVISLSKLNREEFEFVSKILDNLSKGKE 121 >gi|167770464|ref|ZP_02442517.1| hypothetical protein ANACOL_01809 [Anaerotruncus colihominis DSM 17241] gi|167667059|gb|EDS11189.1| hypothetical protein ANACOL_01809 [Anaerotruncus colihominis DSM 17241] Length = 112 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 14/122 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R L M+Q + LGIT E G N + ++ I ++ Sbjct: 3 ERLKQLRKALKMNQTNFAKELGITQTAYSMIENGNNPLSDRYIKVICSCFNVNENWLRTG 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + F S+P + F + + +Q ++ + + ++++++K Sbjct: 63 NGDM-------------FFSSPYEKEFTEIFSHLA-PETQQYLLLMAKELLNTQQKLLNQ 108 Query: 137 EE 138 +E Sbjct: 109 DE 110 >gi|154505077|ref|ZP_02041815.1| hypothetical protein RUMGNA_02587 [Ruminococcus gnavus ATCC 29149] gi|153794556|gb|EDN76976.1| hypothetical protein RUMGNA_02587 [Ruminococcus gnavus ATCC 29149] Length = 209 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R++ RR+ L ++Q + E +G+T + +YE G + +SE L + + Sbjct: 10 IGSRVKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ + + QL + +D + ++ +++ Sbjct: 70 KGETDEYETDITDKRELQIRDAMGDILEQLPLALTKEEDAFSKDLLLLMLKQ 121 >gi|149175702|ref|ZP_01854321.1| restriction-modification system regulatory protein, putative [Planctomyces maris DSM 8797] gi|148845421|gb|EDL59765.1| restriction-modification system regulatory protein, putative [Planctomyces maris DSM 8797] Length = 73 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + G+R+R R G SQE + V E+G + ++ I++ L+ Sbjct: 6 DILVRFGQRVRKLRKEQGYSQENFAYACELDRTYVGGIERGERNLALRNIERIAKTLDIS 65 Query: 70 ISFFFDV 76 ++ D Sbjct: 66 LAELMDG 72 >gi|147677630|ref|YP_001211845.1| hypothetical protein PTH_1295 [Pelotomaculum thermopropionicum SI] gi|146273727|dbj|BAF59476.1| Uncharacterized protein conserved in bacteria [Pelotomaculum thermopropionicum SI] Length = 258 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 6/96 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH------ISEVL 66 + +GK++R R G++ E + E I + + E+ + + + L Sbjct: 1 MEIGKKLRETRENRGLTLEAVEEETKIRRKYLHAMEEEKFHILPGPVYARAFLKNYARFL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + ++ I + + + + Sbjct: 61 NLNVEEIMELYKQRFEAIPEKADEPSEKPAEKRTRD 96 >gi|291521206|emb|CBK79499.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 128 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + N + +GKRIR RR+ L M Q +L E + I+ + E+G+ R G I +V Sbjct: 2 RNENERFVEMGKRIRTRRLSLKMKQMELAEEVDISNNHISSIERGIERPGLDSFIRICDV 61 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 L+ + S + + +N+ + T + ++L Q + ++ Sbjct: 62 LDVTPDYLLLGSMKSNNVPKNITDNLK--LCTDEEIRLVEAMTQYLVEQHKK 111 >gi|242399365|ref|YP_002994789.1| Predicted transcription regulator, containing DNA-binding HTH domain [Thermococcus sibiricus MM 739] gi|242265758|gb|ACS90440.1| Predicted transcription regulator, containing DNA-binding HTH domain [Thermococcus sibiricus MM 739] Length = 65 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R + G++QE L + LG+T Q + EKG I++ + I F Sbjct: 3 NRLRELRELKGLTQEDLAKTLGVTRQTIIAIEKGKYDPSLRLAFKIAKFFKVKIEDIF 60 >gi|271968400|ref|YP_003342596.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270511575|gb|ACZ89853.1| transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 78 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D++ RI + R G+S++ L LG+ +Q + E+G I+E E P+ Sbjct: 5 DVH--NRISVLRAERGVSRKDLAAALGVHYQTIGYLERGQYSPSLFLALRIAEYFEVPVE 62 Query: 72 FFFDVSP 78 F + P Sbjct: 63 IVFSLRP 69 >gi|221195296|ref|ZP_03568352.1| transcriptional regulator [Atopobium rimae ATCC 49626] gi|221185199|gb|EEE17590.1| transcriptional regulator [Atopobium rimae ATCC 49626] Length = 142 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 10/133 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + + R SQE+L + +G++ Q + KYE G + + +H++ V I Sbjct: 5 ENLVELRKYHDFSQEELADMIGVSRQTLSKYETGESLPDIEKCKHLANVFGVTIDDLISY 64 Query: 77 SPTVCSDIS------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 ++ + M + + + QI D+ II + E Sbjct: 65 DKKNEDNLGLGVPPKGKHIFGMVKVGDKGQIVIPVKARQIFDINPGDSII----VLGDEE 120 Query: 131 KKYRTIEEECMVE 143 + I+E+ ++E Sbjct: 121 QGIALIKEKGILE 133 >gi|217966210|ref|YP_002351888.1| gp33 [Listeria monocytogenes HCC23] gi|217335480|gb|ACK41274.1| gp33 [Listeria monocytogenes HCC23] gi|307572181|emb|CAR85360.1| HTH-type transcriptional regulator, putative [Listeria monocytogenes L99] Length = 158 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 3/92 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R +QE + + LGI+ E G N + ++ + + Sbjct: 3 GNRLKQLRKNNNKTQEDISKILGISRGAYSHIENGRNEPDMETIVKLANIFGVSTDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 S D + +D +T + ++ + Sbjct: 63 RSNNGFIDTIA---AHIDSNATEEEMEEILAY 91 >gi|160884700|ref|ZP_02065703.1| hypothetical protein BACOVA_02689 [Bacteroides ovatus ATCC 8483] gi|237717098|ref|ZP_04547579.1| conserved hypothetical protein [Bacteroides sp. D1] gi|237721923|ref|ZP_04552404.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262405867|ref|ZP_06082417.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294647828|ref|ZP_06725380.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294806223|ref|ZP_06765070.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|156109735|gb|EDO11480.1| hypothetical protein BACOVA_02689 [Bacteroides ovatus ATCC 8483] gi|229443081|gb|EEO48872.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229448792|gb|EEO54583.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|262356742|gb|EEZ05832.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292636736|gb|EFF55202.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|294446479|gb|EFG15099.1| DNA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|295085704|emb|CBK67227.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 131 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 4/129 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VG R+++ RM ++QE++GE L ++ K E G + +RL I+EVL Sbjct: 1 METDLKKIVGHRLQMLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVL 60 Query: 67 ESPISFFF---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F D + V + + N + + ++ ++ R + L Sbjct: 61 NMSALELFNKIDGNVYVNNSGTIGTNIGVAKDCSSVHIEAADDLRELIKANSR-LLDMLY 119 Query: 124 RSIVSSEKK 132 + I E K Sbjct: 120 KRIELLENK 128 >gi|153955926|ref|YP_001396691.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219856268|ref|YP_002473390.1| hypothetical protein CKR_2925 [Clostridium kluyveri NBRC 12016] gi|146348784|gb|EDK35320.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569992|dbj|BAH07976.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 200 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 48/127 (37%), Gaps = 16/127 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ RM M+Q++L + L I+ + YE+ L+ I++ + + Sbjct: 3 GEKLKKLRMDKNMTQQELAKILKISSSTIGMYEQNRRSPDIETLKLIADYFQCSTDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + I + L L R + ++ +K+ ++I E R Sbjct: 63 KND----------------IENMNRLSLLRKSHNMSQAELAEKLGVTQQTISKYENGSRE 106 Query: 136 IEEECMV 142 + E + Sbjct: 107 PDTETLK 113 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+ L R MSQ +L E LG+T Q + KYE G L+ +S + I + Sbjct: 70 NRLSLLRKSHNMSQAELAEKLGVTQQTISKYENGSREPDTETLKLLSSIFNVSIDYLL 127 >gi|110641376|ref|YP_669106.1| transcriptional regulator [Escherichia coli 536] gi|191170900|ref|ZP_03032451.1| probable transcriptional regulator [Escherichia coli F11] gi|218689103|ref|YP_002397315.1| putative transcriptional regulator [Escherichia coli ED1a] gi|110342968|gb|ABG69205.1| probable transcriptional regulator [Escherichia coli 536] gi|190908632|gb|EDV68220.1| probable transcriptional regulator [Escherichia coli F11] gi|218426667|emb|CAR07498.1| conserved hypothetical protein , putative transcriptional regulator [Escherichia coli ED1a] gi|324015721|gb|EGB84940.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 60-1] Length = 194 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 44/115 (38%), Gaps = 1/115 (0%) Query: 4 NKKIPNPV-DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +K+ N + D ++ + + R ++ +L + G++ + K E+G + A+ L + Sbjct: 2 DKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRL 61 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + L +S F + + + +I G+ ++ + Sbjct: 62 ANALNITLSKLFAELEMQQNSLVLLADQQQHWIDEETGITRWSLSPAGACPELIK 116 >gi|332637058|ref|ZP_08415921.1| hypothetical protein WcibK1_00055 [Weissella cibaria KACC 11862] Length = 127 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 48/125 (38%), Gaps = 13/125 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I+ ++ +L E +G++ + + G +++ +++ S + Sbjct: 11 GRNIKRLIKQREITAARLAEIVGVSTATISDWSNGKTYPRIDKIEAMADYFGVSKSDLVE 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS-----IVSSE 130 V + ++++E ++ GL + + D R ++I+ ++ I E Sbjct: 71 DPDKVSTAVATDEPV---LMAAHWGLDI----SGLPDED-RHRVIDRAKAYIEGLIADYE 122 Query: 131 KKYRT 135 + Sbjct: 123 DRNAK 127 >gi|312891359|ref|ZP_07750876.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311296053|gb|EFQ73205.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 113 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+IRL R G SQE + + L I+ K E G+ + SRL+ IS + + + Sbjct: 4 LGKKIRLLRHQRGWSQEDVAKRLDISIPAFSKIETGITDINLSRLEQISILFDMTVVQLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + S E + + + ++ +++K+IEL + Sbjct: 64 TFNDAEQEQKYSNELDSVSKRLSDRDTEVI---------DLQKKVIELYEELR 107 >gi|289168188|ref|YP_003446457.1| transcriptional regulator [Streptococcus mitis B6] gi|288907755|emb|CBJ22592.1| transcriptional regulator [Streptococcus mitis B6] Length = 287 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 2/95 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R++R LG+SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF+ Sbjct: 6 EKFRVKRKELGLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFFNE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 V S++S + + + L Y +I+ Sbjct: 65 QIEVKSNLSHFKQLSARLLDDRNYDDL-EYIYRIE 98 >gi|260556875|ref|ZP_05829092.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] gi|260409481|gb|EEX02782.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606] Length = 210 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 33/90 (36%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V +VG IR R +SQ+ L + G++ + + E G + ++L I+ VL Sbjct: 32 SSVLQHVGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 91 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTP 98 + + + + Sbjct: 92 DFRTIVSAPEHKEHALVNALAWQGEKEESK 121 >gi|256544850|ref|ZP_05472222.1| helix-turn-helix domain protein [Anaerococcus vaginalis ATCC 51170] gi|256399739|gb|EEU13344.1| helix-turn-helix domain protein [Anaerococcus vaginalis ATCC 51170] Length = 78 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 29/64 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R LG+SQ +LG+ +GI+ + K E G I+ L+ I FD+ Sbjct: 3 NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALDVCIYQIFDL 62 Query: 77 SPTV 80 T Sbjct: 63 DGTG 66 >gi|251772558|gb|EES53124.1| transcriptional regulator, XRE family [Leptospirillum ferrodiazotrophum] Length = 181 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 3/100 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 V +R+R R +S L + GI+ + + E G + L+ + LE PI+ Sbjct: 2 KQVSERLRELRKNQNLSLRTLAKKAGISASSLSQIESGQVSPSIATLEKVCAALELPITT 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ---LNRYFIQ 109 FD +P + N ST L R F Sbjct: 62 LFDETPGESDPLVMPARNRRRVYSTTSHATVEPLARGFAA 101 >gi|227538776|ref|ZP_03968825.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227241285|gb|EEI91300.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 220 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 7/112 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G+SQ+ E +T + YE+ I+ P+S Sbjct: 4 IGYNIKKLRNVKGLSQQAFAELFNLTRGNISSYEEMRAEPKIDIALKIANYFSIPLSNLI 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 D +E N D+ + + I R+++ L + + Sbjct: 64 D-----KKLSVNEILNFNDYFEANTSIAPPKNLAGIP-FLSRERVF-LAKEL 108 >gi|162448051|ref|YP_001621183.1| XRE family transcriptional regulator [Acholeplasma laidlawii PG-8A] gi|161986158|gb|ABX81807.1| transcriptional regulator, XRE family [Acholeplasma laidlawii PG-8A] Length = 182 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++GK+IR R+ ++QE+L L +T + + E + L + EVL Sbjct: 2 IDIGKKIRALRLGNNLTQEELANRLELTKGYISQLENNLTSPSIQTLFSLLEVLGVETHE 61 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF + I + + + Sbjct: 62 FFSKPEGEDAKIVFTKEDFYE 82 >gi|153837553|ref|ZP_01990220.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus AQ3810] gi|149749149|gb|EDM59954.1| transcriptional regulator, MerR family [Vibrio parahaemolyticus AQ3810] Length = 518 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 7/73 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G L+ I+EV Sbjct: 13 FLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEVF 72 Query: 67 ESPISFFFDVSPT 79 + ++F D P Sbjct: 73 QKDPAWFLDDEPE 85 >gi|222055067|ref|YP_002537429.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221564356|gb|ACM20328.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 115 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 13/113 (11%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 R G+SQEKL E +G++ Q+QKYE G +++ +LQ +++ L + FF V Sbjct: 16 QLRERAGISQEKLAEHVGVSKGQIQKYEYGKDKMNTDKLQRVADALSVSVQEFFATGEDV 75 Query: 81 CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 SE+ L + I + ++++ I+++ + + K Sbjct: 76 LPLAVSEKL-------------LLDAYRSIPNKEIKESILKITTNATRHDDKE 115 >gi|40063589|gb|AAR38378.1| helix-turn-helix domain protein [uncultured marine bacterium 582] Length = 121 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 11/122 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R MSQ + + LG+ ++K+E+ ++ A+RL ++ +L I + + Sbjct: 5 GDRLAAAREHAAMSQSDMAKRLGVKVSTLRKWEQDLSEPRANRLSMMAGLLNVSIMWLLN 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S D T + ++ + ++ + EKK R Sbjct: 65 AEGEGISGPDDGSYIAPDIQETLNEIRDMKTVMKTSS-----------ERLARLEKKLRL 113 Query: 136 IE 137 I Sbjct: 114 IL 115 >gi|27377565|ref|NP_769094.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27350709|dbj|BAC47719.1| bll2454 [Bradyrhizobium japonicum USDA 110] Length = 481 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 2/120 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R LG+SQ ++ E LGI+ V E+ V A L ++E + + Sbjct: 9 LFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDLRD 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSE 130 +E + F Q R ++ Q++ E Sbjct: 69 LATADEDRFFAELNEIFSDPLFRQIDVPKQELRDLAELCPGVTHALQRLYAAYTEARQGE 128 >gi|323486113|ref|ZP_08091444.1| hypothetical protein HMPREF9474_03195 [Clostridium symbiosum WAL-14163] gi|323400680|gb|EGA93047.1| hypothetical protein HMPREF9474_03195 [Clostridium symbiosum WAL-14163] Length = 86 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R G++QE+LGE +G + Q + E IS++ I F Sbjct: 3 NRIRELREQKGLTQEQLGEMVGASRQAINAIETEKFEPSIWLAYDISQIFGCSIEEVFLF 62 Query: 77 SPTVCSDISS 86 + + + Sbjct: 63 AESQKKSRAD 72 >gi|315033824|gb|EFT45756.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0017] Length = 109 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 2/103 (1%) Query: 17 KRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R++ R ++Q+ + LG+ YE+G I++ + + Sbjct: 4 NRLKQLRKSKPHLTQQDMANILGVAKTTYASYEQGKRTPDVEIQNKIADYFGVTLDYLHG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDG-LQLNRYFIQIDDVKVRQ 117 S ++ E+ V I +N ID +K R Sbjct: 64 RKSDSASQLTKEQLTVAAHIDDDVSEKDMNEILSFIDYIKKRD 106 >gi|312886574|ref|ZP_07746182.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311300977|gb|EFQ78038.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 258 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 26/67 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + I+ R G++Q++ + L I V YE+ L+ I+ E + F Sbjct: 4 ISSNIKFLRKKKGLTQQQFADELDIKRSLVGAYEENRAEPKYDLLKKIALYFELSVDDFI 63 Query: 75 DVSPTVC 81 + + Sbjct: 64 NEAIDDK 70 >gi|325679705|ref|ZP_08159279.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108520|gb|EGC02762.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 73 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +RIR R +SQ+K+ + +T QQ Q YE G + +++ + + + Sbjct: 5 QRIRDLREDNDLSQQKVADYPEVTRQQYQLYECGKREMPMHLFIKLADFYKVSLDYL 61 >gi|317152263|ref|YP_004120311.1| Cupin 2 barrel domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942514|gb|ADU61565.1| Cupin 2 conserved barrel domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 186 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 38/105 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R +S E L E G+T + +Q E L ++ L + F Sbjct: 4 IGTRIRSYRERQKLSIEDLAERTGLTEEFIQAVEGTDMYPSLRPLVKLARALGVRLGTFL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 D + + + + PDG + F + K + + Sbjct: 64 DDQVSSDPLVVRLADREEELTMHPDGKEPGVVFHSLGRGKTDRHM 108 >gi|257869016|ref|ZP_05648669.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257803180|gb|EEV32002.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 397 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 27/60 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I RR ++Q +L + + ++ V K+E G + + L ++ + + Sbjct: 5 IGQEIAKRRKDKQITQTELADFMSVSKASVSKWETGQSYPDITLLPLLAAFFDCSVDDLL 64 >gi|227522962|ref|ZP_03953011.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227089780|gb|EEI25092.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290] Length = 67 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R +SQ L E +G+ Q + E + I++VL + ++ F Sbjct: 2 NRVREYRKKQKLSQFSLAEKVGVARQTINLIENDKYNPSLNLCISIAKVLGTDLNTLFWE 61 Query: 77 SPTVCS 82 S Sbjct: 62 VEDNES 67 >gi|150398491|ref|YP_001328958.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030006|gb|ABR62123.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 234 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 8/97 (8%) Query: 5 KKIPNPV--------DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 + P+ + ++ +G +R R LG++ + I+ + K E G Sbjct: 29 TQDPHAIRDTREKVLEVAIGHEVRAFRKKLGITVADVASATDISVGMLSKIENGNTSPSL 88 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 + LQ +S L PI+ FF S + + +D Sbjct: 89 TTLQTLSRALGVPITAFFRRFEEEHSAVFVKAGEGVD 125 >gi|78065731|ref|YP_368500.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77966476|gb|ABB07856.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 206 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 38/100 (38%), Gaps = 4/100 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R + G + + L G++ + E+ A L ++ L + Sbjct: 14 INERIARRVRDLRTVRGYTLDALAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSL 73 Query: 71 SFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + F D +PT +++ D S L+ Sbjct: 74 AGLFGGDQDDTPTQPLARHAQQAEWRDPASGYVRRNLSPA 113 >gi|15963850|ref|NP_384203.1| hypothetical protein SMc02620 [Sinorhizobium meliloti 1021] gi|307309551|ref|ZP_07589206.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307320383|ref|ZP_07599800.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|15073025|emb|CAC41484.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti 1021] gi|306893949|gb|EFN24718.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306900011|gb|EFN30632.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 243 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 8/97 (8%) Query: 5 KKIPNPV--------DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 + P+ + ++ +G +R R LG++ + I+ + K E G Sbjct: 38 TQDPHAIRDTREKVLEVAIGHEVRAFRKKLGITVADVASATDISVGMLSKIENGNTSPSL 97 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 + LQ +S L PI+ FF S + + +D Sbjct: 98 TTLQTLSRALGVPITAFFRRFEEEHSAVFVKAGEGVD 134 >gi|257875583|ref|ZP_05655236.1| predicted protein [Enterococcus casseliflavus EC20] gi|257809749|gb|EEV38569.1| predicted protein [Enterococcus casseliflavus EC20] Length = 293 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 30/64 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R ++Q++L L ++ + + K+E+G L ++++L +P+ Sbjct: 7 KKLKEYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVEELLKE 66 Query: 77 SPTV 80 Sbjct: 67 KKET 70 >gi|257865956|ref|ZP_05645609.1| predicted protein [Enterococcus casseliflavus EC30] gi|257872289|ref|ZP_05651942.1| predicted protein [Enterococcus casseliflavus EC10] gi|257799890|gb|EEV28942.1| predicted protein [Enterococcus casseliflavus EC30] gi|257806453|gb|EEV35275.1| predicted protein [Enterococcus casseliflavus EC10] Length = 293 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 30/64 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R ++Q++L L ++ + + K+E+G L ++++L +P+ Sbjct: 7 KKLKEYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVEELLKE 66 Query: 77 SPTV 80 Sbjct: 67 KKET 70 >gi|253680970|ref|ZP_04861773.1| DNA-binding protein [Clostridium botulinum D str. 1873] gi|253562819|gb|EES92265.1| DNA-binding protein [Clostridium botulinum D str. 1873] Length = 195 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 29/77 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I+ R L +SQE+L E + +T Q + +E L +S + + Sbjct: 1 MQLHTQIKKYRTNLNLSQEELAEKVYVTRQTISNWENNKTYPDIRSLLLLSTLFNISLDQ 60 Query: 73 FFDVSPTVCSDISSEEN 89 + ++ Sbjct: 61 LIKGDIKTMQEKINKSE 77 >gi|225375203|ref|ZP_03752424.1| hypothetical protein ROSEINA2194_00828 [Roseburia inulinivorans DSM 16841] gi|225212954|gb|EEG95308.1| hypothetical protein ROSEINA2194_00828 [Roseburia inulinivorans DSM 16841] Length = 187 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 14/121 (11%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N+K +G I R G++Q +L + L +T + V K+E+GV L+ Sbjct: 1 MDNQK--------LGIFITELRKEKGLTQAQLAQKLNVTDKAVSKWERGVGFPDIKLLEP 52 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 +++VL+ + S + S + F + + L Y +I + R ++ Sbjct: 53 LADVLDISLLELM-KSERLPKTTVSAPDTTDAF---QNVIDLASYERKI--ERQRIALVT 106 Query: 122 L 122 L Sbjct: 107 L 107 >gi|224542577|ref|ZP_03683116.1| hypothetical protein CATMIT_01761 [Catenibacterium mitsuokai DSM 15897] gi|224524502|gb|EEF93607.1| hypothetical protein CATMIT_01761 [Catenibacterium mitsuokai DSM 15897] Length = 119 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 48/116 (41%), Gaps = 4/116 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISFFFDV 76 R+R R+ +SQ++L +G+ V ++EK G N + L I+ + + Sbjct: 4 RMRRARLHAKLSQQELATKIGVQRSAVAQWEKTGGNLPSMNHLIDIALATGVTLEWLGTG 63 Query: 77 SPTVCSDIS--SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + +D + +D+ Q + ++ ++R+ ++ ++ + + Sbjct: 64 RGPIKADEETWTPAVESLDYAQDETEYQCLQDLRRLP-HQLRENLVGIIAQLAKNH 118 >gi|251796510|ref|YP_003011241.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247544136|gb|ACT01155.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 108 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 11/114 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R +SQE + + +GIT YE + L ++ E F D Sbjct: 6 GDRLKELRRERSLSQEIVAQSIGITRSAYSHYEINNRQPVYETLIKLASFFEVTTDFIID 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + ++ R +D K ++ I +++ +I S Sbjct: 66 GDTRSTEPQVAAD-----------AAEIIRLLNNMDVDKRKESIDKMLDAIRES 108 >gi|167835768|ref|ZP_02462651.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 187 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 2/103 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F S Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSES 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + S R + I ++++ Sbjct: 64 RDRELITVTRASERTSMGSVSSVR--ARTYESIAAGVAPKRLL 104 >gi|167832382|ref|YP_001686773.1| prophage repressor [Halomonas phage phiHAP-1] gi|166836356|gb|ABY90405.1| prophage repressor [Halomonas phage phiHAP-1] Length = 234 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ--VQKYEKGVNRVGASRLQHISEVLESPI 70 +++G IR R G++ ++L + +G Q + + E + I+ L + + Sbjct: 13 MDIGSAIRHLRRQQGLTLQELCDAIGNDMQTGYLSRVETNKLNPSVYTVADIARALGTTV 72 Query: 71 SFFFDVSPT 79 S T Sbjct: 73 DELLKGSNT 81 >gi|57234348|ref|YP_181599.1| DNA-binding protein, putative [Dehalococcoides ethenogenes 195] gi|57224796|gb|AAW39853.1| DNA-binding protein, putative [Dehalococcoides ethenogenes 195] Length = 222 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 1/108 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +++G++IR R G + E LG G++ Q ++K EKG + + +S S Sbjct: 10 MSIGEKIREFRKARGWTPEYLGSRSGLSGQYIRKLEKGERQSITLTTASKLSSAFGIEPS 69 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 S + + + + + + R ++ Sbjct: 70 KLISESEATLPRQIEDILTEIRSVFQRLETVEVCVHGCMPERRPRNEL 117 >gi|30022437|ref|NP_834068.1| MerR family transcriptional regulator [Bacillus cereus ATCC 14579] gi|29897995|gb|AAP11269.1| Transcriptional regulator, MerR family [Bacillus cereus ATCC 14579] Length = 181 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + EE + ++ Sbjct: 61 LLLEQKDRLKIVKKEERKYSVYGKDEQRIEHV 92 >gi|117922490|ref|YP_871682.1| XRE family transcriptional regulator [Shewanella sp. ANA-3] gi|117614822|gb|ABK50276.1| transcriptional regulator, XRE family [Shewanella sp. ANA-3] Length = 510 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A L I+ V Sbjct: 13 FLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAEMLAVIATVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + + +F D P + Sbjct: 73 QKDVDWFLDDVPEESAITPD 92 >gi|331268175|ref|YP_004385884.1| putative prophage repressor [Clostridium botulinum BKT015925] gi|329127725|gb|AEB77665.1| putative prophage repressor [Clostridium botulinum BKT015925] Length = 108 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 47/108 (43%), Gaps = 7/108 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R + G++Q + LG++ + EKGV + + I + ++ + Sbjct: 3 ERIKELRKLKGLNQSTFAKSLGLSQNHISSIEKGVRGLTTRTINDICRIYNVSPNWLING 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + D + + + + F+Q+ D + +Q II+L + Sbjct: 63 TGDIFIDTTE------QLYTNNEVKEFIEMFLQL-DKETQQLIIQLTK 103 >gi|327474019|gb|EGF19432.1| XRE family transcriptional regulator [Streptococcus sanguinis SK408] Length = 94 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+++ R G SQ ++ E LG T Q + +E + ++ L +++ + + Sbjct: 1 MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60 >gi|325977288|ref|YP_004287004.1| HTH-type transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177216|emb|CBZ47260.1| Uncharacterized HTH-type transcriptional regulator Mb0023 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 210 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 48/117 (41%), Gaps = 5/117 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK + R G++Q +L E +G+ + K E G + + L I+ ++ + F Sbjct: 10 GKNVAQLRKKKGVTQAELAEVIGVKKAAISKIELGTSYPTFANLDKIARYFKATPNELF- 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKIIELVRSIVSSEK 131 +DI E + + ++ R +I++ + +I+ + I E+ Sbjct: 69 ---GTSTDIELERAVIKTDKYSEKAEKIIRAVSKIEEYSEKADRILYTLERIDELER 122 >gi|324018913|gb|EGB88132.1| cupin domain protein [Escherichia coli MS 117-3] Length = 185 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 8/105 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P GKR+ R G+SQ + E G+T + +K S LQ Sbjct: 1 MSDEGLAP-------GKRLSEIRQQQGLSQRRAAELSGLTHSAISTKKKKKVSPAISTLQ 53 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +V +S FF + + ++++++ S ++L Sbjct: 54 KLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLV 98 >gi|319939541|ref|ZP_08013901.1| prophage [Streptococcus anginosus 1_2_62CV] gi|319811527|gb|EFW07822.1| prophage [Streptococcus anginosus 1_2_62CV] Length = 159 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 29/61 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +SQ+++ L + + Q++E G +++ + Q +++ E I + Sbjct: 2 NRLKELRQDKKLSQKEIALELQVPLRTYQRWENGESQIKQEKAQQLADYFEVSIGYLLGY 61 Query: 77 S 77 Sbjct: 62 D 62 >gi|313499627|gb|ADR60993.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 99 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 26/70 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R + G++Q +L E G + + ++E + ++VL FF Sbjct: 2 GIALRRYRKLAGLTQAQLAERTGFDPKTISRFETSTYTPSIDAIMAFAQVLGVKPKDFFA 61 Query: 76 VSPTVCSDIS 85 + Sbjct: 62 EPDDEEEQRA 71 >gi|297624714|ref|YP_003706148.1| XRE family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165894|gb|ADI15605.1| transcriptional regulator, XRE family [Truepera radiovictrix DSM 17093] Length = 93 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R+ + R G+S++ L + +G+ +Q + E+G +++ PI F Sbjct: 8 IYNRLAVLRAERGLSRQALADAVGVNYQTIGYLERGDYNPSLELAFRFAKLFGLPIEAIF 67 Query: 75 DVSP 78 P Sbjct: 68 STEP 71 >gi|283769265|ref|ZP_06342169.1| peptidase S24-like domain protein [Bulleidia extructa W1219] gi|283104241|gb|EFC05620.1| peptidase S24-like domain protein [Bulleidia extructa W1219] Length = 275 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 2/83 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 VG+RIR RR+ L +S E LG +G + +YEKG + + ++ L + + Sbjct: 5 VGERIRKRRIELKLSPEDLGNKIGKDRATIYRYEKGEIENLPVGIIAPLATALHTTPQYL 64 Query: 74 FD-VSPTVCSDISSEENNVMDFI 95 ++ ++ +N+ DF+ Sbjct: 65 MGWEEDPNLTERDNDLDNISDFL 87 >gi|167737542|ref|ZP_02410316.1| DNA-binding protein [Burkholderia pseudomallei 14] Length = 187 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 2/103 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSEG 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + + R + I +K++ Sbjct: 64 RDRELITVTRASERTSMG--RASSERVRTYESIAAGVAPKKLL 104 >gi|153812213|ref|ZP_01964881.1| hypothetical protein RUMOBE_02611 [Ruminococcus obeum ATCC 29174] gi|149831620|gb|EDM86707.1| hypothetical protein RUMOBE_02611 [Ruminococcus obeum ATCC 29174] Length = 112 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 42/101 (41%), Gaps = 1/101 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRI RR LG+ Q ++ E G+ + + E+ ++ + ++ VL + F Sbjct: 11 EIGKRIARRRKALGLKQSEVEEKAGLGQKYLSNIERSISIPSIEVIMKLAYVLNTTPDEF 70 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + + ++ +++ L L F+ + Sbjct: 71 LIGTLNSNDEEWKKSAELLRPLNSKQ-LNLVHNFLIWLSEQ 110 >gi|76787698|ref|YP_330569.1| DNA-binding protein [Streptococcus agalactiae A909] gi|76562755|gb|ABA45339.1| DNA-binding protein [Streptococcus agalactiae A909] Length = 358 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 45/113 (39%), Gaps = 4/113 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I L+R +GM+QE L + L +T + K+E + L ++ + + + Sbjct: 1 MLGENIYLQRTQIGMTQENLSDYLHLTKTTISKWENNQAKPDIDYLILMANLFDISLDDL 60 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 +S + + + + +S D Q + + + +I + Sbjct: 61 VGYQKTLSDDQRNQLIKDLKIKANVLSERDFFQEVKELSKQFPNDFKTLLIMI 113 >gi|16800829|ref|NP_471097.1| hypothetical protein lin1761 [Listeria innocua Clip11262] gi|16414248|emb|CAC96992.1| lin1761 [Listeria innocua Clip11262] Length = 74 Score = 46.7 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G++Q++L E L + V +E G + G S + +L+ +SF F Sbjct: 4 NNLSDARKEKGLTQQELAEKLQVRKSTVSNWETGYSSPGISTAIQTAIILDKDVSFLF 61 >gi|331085146|ref|ZP_08334232.1| hypothetical protein HMPREF0987_00535 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407929|gb|EGG87419.1| hypothetical protein HMPREF0987_00535 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 106 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 46/120 (38%), Gaps = 15/120 (12%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N +G+++R R+ ++QE + + I + E +V S L I L Sbjct: 1 MDNLNFKRIGEKLRTIRLSKNLTQEYIANAVDINTSHISNIENNRVKVSLSTLVQICNAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 ++ + + T S +E + + +++I+++++++ Sbjct: 61 DTTVDYVLSEEYTDSSSAIEQEILHELHACS---------------NETKEQILKIIKAL 105 >gi|319653368|ref|ZP_08007468.1| hypothetical protein HMPREF1013_04085 [Bacillus sp. 2_A_57_CT2] gi|317394852|gb|EFV75590.1| hypothetical protein HMPREF1013_04085 [Bacillus sp. 2_A_57_CT2] Length = 113 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G RI+ R+ G S +L E ++ + E+G L I++ L++ + Sbjct: 1 MIGGRIKTLRIKKGYSINELSEKAEVSKSYLSYIERGIQENPSLQVLSRIAKTLDANLED 60 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 + + +D+S + + + Sbjct: 61 LLEENKDEITDLSKLDEEWISLV 83 >gi|313891199|ref|ZP_07824818.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313120562|gb|EFR43682.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] Length = 359 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 6/116 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I L R LGM+QEKL + L +T + K+E + L ++++ + + Sbjct: 1 MIGDTIFLERTRLGMTQEKLSDYLHLTKATISKWENNQAKPDIDYLILLAKLFDMSLDDL 60 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ--IDDVKVRQKIIELV 123 +S + S + + M+ +S D ++ + I D K +I+LV Sbjct: 61 VGFQKTLSDSERSALFHQLKKEMNHMSDDDVVKKAEELSKQHISDFKTLLILIQLV 116 >gi|302341551|ref|YP_003806080.1| phage repressor [Desulfarculus baarsii DSM 2075] gi|301638164|gb|ADK83486.1| putative phage repressor [Desulfarculus baarsii DSM 2075] Length = 252 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 1/90 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ- 60 + N + +G R R R LG+SQ++ LG+T + E+G L Sbjct: 1 MSNNSSIRNNRVEIGGRFREIRKQLGLSQQEFASVLGVTQATASRIERGEVSATVEALSG 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN 90 + + + + + + + Sbjct: 61 LLCAYPDLDVGYILCGNTSAIQSPCPDALE 90 >gi|301057562|ref|ZP_07198642.1| cupin domain protein [delta proteobacterium NaphS2] gi|300448286|gb|EFK11971.1| cupin domain protein [delta proteobacterium NaphS2] Length = 221 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/127 (11%), Positives = 44/127 (34%), Gaps = 1/127 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G RI+ R G+S + I + + E+G + +++ L+ + Sbjct: 35 ISPEMGVRIKKARESRGLSIFDVYLRTDIDVDTLSQIEEGNITPPLGTVIKLAKALDLKM 94 Query: 71 SFFFDVSPTVC-SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 +F + + ++ + Q + + K +++ + ++ S Sbjct: 95 GYFISGEEEKSYTIVRRDDREKASRFDSKKEEQYGYGYESLAPRKTNRQMEPFLVTLEPS 154 Query: 130 EKKYRTI 136 + + Sbjct: 155 DTEEERS 161 >gi|299537075|ref|ZP_07050378.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298727316|gb|EFI67888.1| transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 183 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 7/81 (8%) Query: 1 MVGNKKIPNPVDI--NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M +D+ VG +R R MS E+L + ++ + K E+G + Sbjct: 1 MQEEN-----IDLSGQVGGNLREIRKSKRMSLEELAKVSNVSKLTLGKIERGETNPTVNI 55 Query: 59 LQHISEVLESPISFFFDVSPT 79 L I L P+ Sbjct: 56 LWKICRGLNIPLVALLSFEEN 76 >gi|296106673|ref|YP_003618373.1| hypothetical protein lpa_01638 [Legionella pneumophila 2300/99 Alcoy] gi|295648574|gb|ADG24421.1| hypothetical protein lpa_01638 [Legionella pneumophila 2300/99 Alcoy] Length = 87 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK+IR R G SQE + + E+G + L I + LE + Sbjct: 8 IVLGKQIRKIRKEKGFSQEGFANFIEMNRGYYGTVERGEANITILNLLKILKGLEVTPNE 67 Query: 73 FF 74 F Sbjct: 68 LF 69 >gi|197103228|ref|YP_002128606.1| transcriptional regulator, XRE family [Phenylobacterium zucineum HLK1] gi|196480504|gb|ACG80031.1| transcriptional regulator, XRE family [Phenylobacterium zucineum HLK1] Length = 73 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 26/70 (37%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V VG +R R G+SQE L E +G+ V E G L H + L+ Sbjct: 2 DVRTIVGTNVRRYRGEAGLSQEGLAELMGVDRAYVSGLELGRRNPTILTLWHTAMALKIR 61 Query: 70 ISFFFDVSPT 79 S + Sbjct: 62 PSELLEFEGP 71 >gi|206969826|ref|ZP_03230780.1| DNA-binding protein [Bacillus cereus AH1134] gi|218233772|ref|YP_002369171.1| DNA-binding protein [Bacillus cereus B4264] gi|218899530|ref|YP_002447941.1| DNA-binding protein [Bacillus cereus G9842] gi|228923113|ref|ZP_04086404.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941529|ref|ZP_04104079.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228960632|ref|ZP_04122278.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974459|ref|ZP_04135027.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981053|ref|ZP_04141355.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|229071869|ref|ZP_04205081.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|229081626|ref|ZP_04214121.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|229111834|ref|ZP_04241380.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|229146932|ref|ZP_04275296.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|229152564|ref|ZP_04280754.1| Transcriptional regulator, MerR [Bacillus cereus m1550] gi|229180637|ref|ZP_04307977.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|296504853|ref|YP_003666553.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|206735514|gb|EDZ52682.1| DNA-binding protein [Bacillus cereus AH1134] gi|218161729|gb|ACK61721.1| DNA-binding protein [Bacillus cereus B4264] gi|218543442|gb|ACK95836.1| DNA-binding protein [Bacillus cereus G9842] gi|228602782|gb|EEK60263.1| Transcriptional regulator, MerR [Bacillus cereus 172560W] gi|228630930|gb|EEK87569.1| Transcriptional regulator, MerR [Bacillus cereus m1550] gi|228636531|gb|EEK92997.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST24] gi|228671590|gb|EEL26888.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-15] gi|228701630|gb|EEL54121.1| Transcriptional regulator, MerR [Bacillus cereus Rock4-2] gi|228711241|gb|EEL63204.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|228778713|gb|EEM26978.1| Transcriptional regulator, MerR [Bacillus thuringiensis Bt407] gi|228785295|gb|EEM33306.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799060|gb|EEM46031.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228818179|gb|EEM64254.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836492|gb|EEM81842.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296325905|gb|ADH08833.1| MerR family transcriptional regulator [Bacillus thuringiensis BMB171] gi|326942143|gb|AEA18039.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 181 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + EE + ++ Sbjct: 61 LLLEQKDRLKIVKKEERKYSVYGKDEQRIEHV 92 >gi|104774634|ref|YP_619614.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423715|emb|CAI98696.1| Putative transcriptional regulator (Xre family) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 119 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 3/111 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK +R R GMSQ++L LG++ Q + +E G + I+ + + Sbjct: 5 MIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVSRNSI 64 Query: 74 FDVSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 P + + + D T G Q+ R +I I + +R I E Sbjct: 65 LAGLPVEMLEQADRRVVDLTDRDIRLTYLGQQVQREYIDIIEKLMRWDIAE 115 >gi|91201004|emb|CAJ74061.1| similar to two component response regulator [Candidatus Kuenenia stuttgartiensis] Length = 209 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK+++ R ++Q++L G++ + + E G + L +S L +S+F Sbjct: 138 VGKKLKFLRKSKKITQKQLANRTGLSPSLLSQIENGQIAASLNTLDKLSASLNVKLSYFL 197 Query: 75 DVSPTVCSDIS 85 + +PT + Sbjct: 198 EENPTEIIADT 208 >gi|46019834|emb|CAE52358.1| putative transcriptional regulator [Streptococcus thermophilus] Length = 113 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 33/72 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R +Q ++ E LGI+ +E+GV + L I+++L + + Sbjct: 5 ERLKELRKKANFTQVEVAEKLGISQPAYASWERGVKKPTQDNLVRIAQILNVSVDYLVGN 64 Query: 77 SPTVCSDISSEE 88 S ++ + E Sbjct: 65 SEEKADELDNIE 76 >gi|52141788|ref|YP_085042.1| transcriptional regulator [Bacillus cereus E33L] gi|51975257|gb|AAU16807.1| conserved hypothetical protein; possible transcriptional regulator [Bacillus cereus E33L] Length = 145 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 33/87 (37%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G RI+ R ++Q++L E +G++ + + YE L +++ Sbjct: 1 MNNMIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLSKLADCFSVSA 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST 97 + + T + + D Sbjct: 61 DYLLGRAVTDQPKEQLTQKDEKDIAKR 87 >gi|134298753|ref|YP_001112249.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051453|gb|ABO49424.1| transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 67 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 25/63 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R G+SQ +L + + + E G G ++ +++ L +S + Sbjct: 5 NLKQLREQKGLSQNQLAKLANVPQSAIHYIENGERNPGLQTVEKLADGLGVTLSKLVESK 64 Query: 78 PTV 80 + Sbjct: 65 ESQ 67 >gi|281416428|ref|YP_003347452.1| DNA binding protein [Streptococcus phage Abc2] gi|226823079|gb|ACO83206.1| DNA binding protein [Streptococcus phage Abc2] Length = 168 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 35/76 (46%), Gaps = 1/76 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD- 75 R++ R + +++ +L E +G+T + +E G + + S + ++E I + Sbjct: 2 NRLKELRELRKITRVELAEKIGVTKLTILNWEHGTHEIKGSNAKKLAEYFNVSIPYLLGY 61 Query: 76 VSPTVCSDISSEENNV 91 + +D+ ++ N Sbjct: 62 DTDNTLTDLIAKINEW 77 >gi|257064537|ref|YP_003144209.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792190|gb|ACV22860.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 149 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R G++Q++L L +T Q V ++E G ++ ++ L P+ + Sbjct: 9 QLRSDRGLTQQELANKLYVTRQAVSRWETGETTPNVDMIKLLAVTLGVPVGVLLE 63 >gi|228949497|ref|ZP_04111751.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810220|gb|EEM56587.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 184 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 1/129 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINVGQKIMAFRKAAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF + T ++ N G D + ++ L+ SS + Sbjct: 63 NFF-LEDTNTEELVVRANQRKKITFPESGNVSYELLSPNLDGSLELALMNLLPQTASSIE 121 Query: 132 KYRTIEEEC 140 EE Sbjct: 122 PVAHKGEEI 130 >gi|210622425|ref|ZP_03293157.1| hypothetical protein CLOHIR_01105 [Clostridium hiranonis DSM 13275] gi|210154241|gb|EEA85247.1| hypothetical protein CLOHIR_01105 [Clostridium hiranonis DSM 13275] Length = 66 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L M+Q+ L E +G+T Q + EKG + I +VL + F + Sbjct: 6 KIKSARAALDMTQKDLAEKVGVTRQTISAIEKGDYNPTINLCIQICKVLGKTLDELFWDN 65 Query: 78 P 78 Sbjct: 66 E 66 >gi|167756112|ref|ZP_02428239.1| hypothetical protein CLORAM_01632 [Clostridium ramosum DSM 1402] gi|237734097|ref|ZP_04564578.1| predicted protein [Mollicutes bacterium D7] gi|167704104|gb|EDS18683.1| hypothetical protein CLORAM_01632 [Clostridium ramosum DSM 1402] gi|229382923|gb|EEO33014.1| predicted protein [Coprobacillus sp. D7] Length = 73 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 31/63 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R G +QEK+ + L + + +YE G + + L ++ + ++ + + + Sbjct: 5 KRLKELRTKYGYTQEKVAKYLHVDQKTYSRYELGQHEMTPDTLGKLATLYDTSVDYLIER 64 Query: 77 SPT 79 + Sbjct: 65 TDN 67 >gi|160941440|ref|ZP_02088776.1| hypothetical protein CLOBOL_06332 [Clostridium bolteae ATCC BAA-613] gi|158435650|gb|EDP13417.1| hypothetical protein CLOBOL_06332 [Clostridium bolteae ATCC BAA-613] Length = 193 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 33/83 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RIR+ R ++Q++ + L I+ + E G L+ I S+ Sbjct: 12 ISDRIRVLRKSEHLTQKEFAKRLLISQSYLSGLENGNEIPTNKLLKLICLEFGVSESWLL 71 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 + + + +++ + + +S Sbjct: 72 NDNGEMYTEVYENDKASLTEVSN 94 >gi|113972178|ref|YP_735971.1| XRE family transcriptional regulator [Shewanella sp. MR-4] gi|113886862|gb|ABI40914.1| transcriptional regulator, XRE family [Shewanella sp. MR-4] Length = 510 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A L I+ V Sbjct: 13 FLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAEMLAVIATVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + + +F D P + Sbjct: 73 QKDVDWFLDDVPEESAITPD 92 >gi|332074168|gb|EGI84646.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] Length = 383 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F + Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKIHLANQFHVDLTYF-E 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 SS ++T + + + Sbjct: 63 QEEESIRFDSSVIAFRNADLATRKTIDIQTMY 94 >gi|295107448|emb|CBL04991.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 137 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 5/107 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+ IR R GM+Q +L E +G+T V+ YE G+ V L+ IS L ++ Sbjct: 1 MSVGENIRRYRKSRGMTQAQLAEAVGLTEGAVRHYESGIRAVKPELLESISAALGVSVNA 60 Query: 73 FFDVSPTVCSDISS-----EENNVMDFISTPDGLQLNRYFIQIDDVK 114 D D+ S E++ + + GL LN Sbjct: 61 LKDYGVETAGDLMSLLVRLEDSFGIVPAADGTGLSLNPKASHAPKAA 107 >gi|259047642|ref|ZP_05738043.1| transcriptional regulator [Granulicatella adiacens ATCC 49175] gi|259035833|gb|EEW37088.1| transcriptional regulator [Granulicatella adiacens ATCC 49175] Length = 70 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 23/67 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G++QE+L L ++ Q V E G I+ E I F Sbjct: 3 NRLEEIRKAKGITQEELANALEVSRQTVGSLENGRYNPSIILAFKIARFFEVSIEEVFIY 62 Query: 77 SPTVCSD 83 D Sbjct: 63 EEDQNED 69 >gi|239947476|ref|ZP_04699229.1| helix-turn-helix domain protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921752|gb|EER21776.1| helix-turn-helix domain protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 158 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 74/162 (45%), Gaps = 43/162 (26%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + K P+ + +R++ RR+ +G+SQ++LG+ L I+ QV+KYE+G++R+ Sbjct: 1 MNDSIKHPDKLAS---ERLKERRLAVGISQKELGQALDISALQVKKYEEGLSRLYV---- 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVM-----------DFIST------------ 97 ++VL + + +FF+ S E + DF++ Sbjct: 54 -FAKVLNTSLKYFFNSSEEEKLKTDDENTSNNKIEYLFKEIESDFLNNIAEEEGQYENDI 112 Query: 98 ------------PDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + L L R F ++ + +R+ IIELVRS+ Sbjct: 113 SFDYKELSRTMERELLSLTRAFTRVQNPNIRKIIIELVRSVS 154 >gi|229194032|ref|ZP_04320926.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|228589432|gb|EEK47357.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 184 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 1/129 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DINVG +I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 DINVGHKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF + T ++ N G D + ++ L+ SS + Sbjct: 63 NFF-LEDTNTEELVVRANQRKKITFPESGNVSYELLSPNLDGALELALMNLLPQTASSIE 121 Query: 132 KYRTIEEEC 140 EE Sbjct: 122 PVAHKGEEI 130 >gi|254500680|ref|ZP_05112831.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222436751|gb|EEE43430.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 183 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D ++ +R+ R G+S ++L E GI+ + + E+G A+ L ++ ++ Sbjct: 3 DQDLAQRLIGLRKTKGLSLDELAEKSGISRATLSRIERGDTSPTAAALGRLATAFGVSVA 62 Query: 72 FFFDVSPTVCSD--ISSEENNVMDFIS 96 F + +E+ D + Sbjct: 63 DLFGLGAAAHDAKLAQNEQAVWRDPET 89 >gi|189423556|ref|YP_001950733.1| XRE family transcriptional regulator [Geobacter lovleyi SZ] gi|189419815|gb|ACD94213.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ] Length = 197 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 40/93 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR +R ++ ++L E G++ + + E + L IS L+ I FFF Sbjct: 13 IGEKIRGQRQQRRLTLQELSELTGLSKPLLSQIENEQVVPPLATLLKISRGLKVDIHFFF 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + + + +++ + NR + Sbjct: 73 EDEGNRQRLVLTRGDDLRPDLQRQAVNAENRPY 105 >gi|218960459|ref|YP_001740234.1| putative Repressor lexA [Candidatus Cloacamonas acidaminovorans] gi|167729116|emb|CAO80027.1| putative Repressor lexA [Candidatus Cloacamonas acidaminovorans] Length = 240 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 5/106 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ R +LG+ Q L + L I + + E G L + + + Sbjct: 1 MIGERLKQIRQVLGIKQVDLAKVLKINPSAISQMESGRTNPSLETLSELVVNYNVNLHWL 60 Query: 74 FDVSP---TVCSDISSEENNVMDF--ISTPDGLQLNRYFIQIDDVK 114 +D SS+ + +F + ++ + + + D Sbjct: 61 ITGIGKMFNTANDTSSQNGSWDNFQKLLNDRLEEIVQAHLDLMDSD 106 >gi|160878327|ref|YP_001557295.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160426993|gb|ABX40556.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 141 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 49/129 (37%), Gaps = 2/129 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KR++ R +QE + L I Q YE G N L ++ + P++ Sbjct: 6 IAKRLKELRKSFEYTQEFVASYLNIGRQAYSHYETGRNAPTTDTLYKLASLYHIPVNDLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + + I++ Y D+ K + + + ++ +K Sbjct: 66 KLLSPHPQETYTTPESNN--IASNMLSDFLDYLGNPDNEKKLKMLNRKEKELLFCFEKIS 123 Query: 135 TIEEECMVE 143 T +++ ++E Sbjct: 124 TKDQDDILE 132 >gi|78063471|ref|YP_373379.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77971356|gb|ABB12735.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 73 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 24/64 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + G +R R SQE+L E G+ V + E+G I+ + IS Sbjct: 7 HFGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSISTL 66 Query: 74 FDVS 77 + Sbjct: 67 LPGA 70 >gi|53718580|ref|YP_107566.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|126440552|ref|YP_001058052.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126453277|ref|YP_001065289.1| DNA-binding protein [Burkholderia pseudomallei 1106a] gi|167718493|ref|ZP_02401729.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|167814662|ref|ZP_02446342.1| DNA-binding protein [Burkholderia pseudomallei 91] gi|167844691|ref|ZP_02470199.1| DNA-binding protein [Burkholderia pseudomallei B7210] gi|167893219|ref|ZP_02480621.1| DNA-binding protein [Burkholderia pseudomallei 7894] gi|167901673|ref|ZP_02488878.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] gi|217419739|ref|ZP_03451245.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|237811203|ref|YP_002895654.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|242316552|ref|ZP_04815568.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] gi|254181462|ref|ZP_04888059.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254196408|ref|ZP_04902832.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|52208994|emb|CAH34933.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|126220045|gb|ABN83551.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126226919|gb|ABN90459.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106a] gi|169653151|gb|EDS85844.1| DNA-binding protein [Burkholderia pseudomallei S13] gi|184212000|gb|EDU09043.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|217397043|gb|EEC37059.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|237504755|gb|ACQ97073.1| DNA-binding protein [Burkholderia pseudomallei MSHR346] gi|242139791|gb|EES26193.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] Length = 187 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 2/103 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSEG 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + + R + I +K++ Sbjct: 64 RDRELITVTRASERTSMG--RASSERVRTYESIAAGVAPKKLL 104 >gi|328946068|gb|EGG40214.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1087] Length = 94 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+++ R G SQ ++ E LG T Q + +E + ++ L +++ + + Sbjct: 1 MLGKQLKFIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLICLADFYQISLDEL 60 >gi|317473295|ref|ZP_07932590.1| hypothetical protein HMPREF1011_02940 [Anaerostipes sp. 3_2_56FAA] gi|316899131|gb|EFV21150.1| hypothetical protein HMPREF1011_02940 [Anaerostipes sp. 3_2_56FAA] Length = 180 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 5/114 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ V K I+ R +S E L + G++ + + E+G S L IS ++ P Sbjct: 1 MNLIVAKNIKRLREKQKLSMEALSKLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPF 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + + ++ + G + + D R+ + ++ Sbjct: 61 DAL---TVRPKTPYEIIKTADIEPLLEDSGR--VKNYPLFPDDADRKFAVYYLK 109 >gi|296877345|ref|ZP_06901385.1| hypothetical transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296431865|gb|EFH17672.1| hypothetical transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 228 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 42/72 (58%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++++RR L ++Q+ + + LG+++Q +E+GV + ++Q + ++L P FF ++ Sbjct: 5 EKLKIRRKELKLTQKDIADQLGVSYQAYSAWERGVKQPSREKVQQLEQILNVPKGFFTEI 64 Query: 77 SPTVCSDISSEE 88 + S+E Sbjct: 65 EIVRLYNTLSDE 76 >gi|255526451|ref|ZP_05393362.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296184825|ref|ZP_06853236.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255509833|gb|EET86162.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296050607|gb|EFG90030.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 240 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N + +GK+IR R ++ ++L + + + V KYEKG V L I+ L Sbjct: 1 MINELTCEIGKKIRNCRKSKNITMQQLADIIHKSKASVSKYEKGDIVVDIVTLYDIAAAL 60 Query: 67 ESPISFFF 74 I Sbjct: 61 NIHIEQLL 68 >gi|308235773|ref|ZP_07666510.1| DNA-binding protein [Gardnerella vaginalis ATCC 14018] gi|311114939|ref|YP_003986160.1| DNA-binding protein [Gardnerella vaginalis ATCC 14019] gi|310946433|gb|ADP39137.1| DNA-binding protein [Gardnerella vaginalis ATCC 14019] Length = 67 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G++QE+L + L ++ Q V E G I++ I F Sbjct: 3 NRLEQIRKEKGITQEELADALEVSRQTVGSLENGRYNPSIILAYKIAKYFNLTIEEIFIY 62 Query: 77 SPTVC 81 Sbjct: 63 EEDKK 67 >gi|226360021|ref|YP_002777799.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226238506|dbj|BAH48854.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 196 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 30/80 (37%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D + +RIR R+ G S + L ++ + + E G R+ +L I+ L + + Sbjct: 7 LDGVIRQRIRGLRVARGWSLDALAARCFLSPSTLSRIETGHRRIALDQLVPIARALGTTL 66 Query: 71 SFFFDVSPTVCSDISSEENN 90 + I Sbjct: 67 DQLVESVDDEDVVIRPMPEQ 86 >gi|251794538|ref|YP_003009269.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542164|gb|ACS99182.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 74 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 2/68 (2%) Query: 15 VGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF- 72 VG IR R L M+Q++L + +G+T Q + EKG IS PI Sbjct: 6 VGNHIRKLRFNLNEMTQQQLADKVGVTRQTIVALEKGNYSPSLELAFRISHTFGLPIEEI 65 Query: 73 FFDVSPTV 80 FF T Sbjct: 66 FFYGDDTS 73 >gi|163731540|ref|ZP_02138987.1| transcriptional regulator, putative [Roseobacter litoralis Och 149] gi|161394994|gb|EDQ19316.1| transcriptional regulator, putative [Roseobacter litoralis Och 149] Length = 429 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 10/137 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR RR + G+ Q L LGI+ + E R+G L I+ VL S Sbjct: 7 IGSRIRERRSVAGLKQADLARSLGISPSYLNLIEHNRRRIGGKLLLDIARVLSVEPSLLT 66 Query: 75 DVSPTVCSDISSEENNVMDFIS--TPDGLQLNRYFIQIDD--VKVRQKIIELVRSI---- 126 + + E + S +L F + ++I L R++ Sbjct: 67 EGAEAALIATLREAAKSANLSSAEVERADELTGRFPGWAEVLASGHRRITTLERTVEVLS 126 Query: 127 --VSSEKKYRTIEEECM 141 ++ + K E + Sbjct: 127 DRLTHDPKLAASVHELL 143 >gi|163746251|ref|ZP_02153609.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] gi|161380136|gb|EDQ04547.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] Length = 207 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PVD +G R+R R + E+ G+ + K E G+ L+ ++ LE Sbjct: 24 PVD--LGARVRELRKARNWTLEQAARQAGLARSTLSKIENGLMSPTYDALKKLAVGLEIT 81 Query: 70 ISFFFD 75 + F Sbjct: 82 VPQLFT 87 >gi|160936303|ref|ZP_02083673.1| hypothetical protein CLOBOL_01196 [Clostridium bolteae ATCC BAA-613] gi|158440772|gb|EDP18503.1| hypothetical protein CLOBOL_01196 [Clostridium bolteae ATCC BAA-613] Length = 199 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 33/69 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R G++Q +L +G + + VQKYE G V + I++ L++ +F Sbjct: 8 AIGQRIKTLRKRKGLNQTQLANLIGKSLRTVQKYETGEIEVSIDVVNEIAKHLDTTPTFI 67 Query: 74 FDVSPTVCS 82 Sbjct: 68 LGYETNTAP 76 >gi|30019433|ref|NP_831064.1| SinR protein [Bacillus cereus ATCC 14579] gi|206967979|ref|ZP_03228935.1| transcriptional regulator SinR [Bacillus cereus AH1134] gi|228920093|ref|ZP_04083442.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228951761|ref|ZP_04113860.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229043120|ref|ZP_04190847.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH676] gi|229068931|ref|ZP_04202225.1| HTH-type transcriptional regulator sinR [Bacillus cereus F65185] gi|229078565|ref|ZP_04211123.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-2] gi|229126696|ref|ZP_04255708.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-Cer4] gi|229143985|ref|ZP_04272401.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST24] gi|229177788|ref|ZP_04305161.1| HTH-type transcriptional regulator sinR [Bacillus cereus 172560W] gi|296501962|ref|YP_003663662.1| SinR protein [Bacillus thuringiensis BMB171] gi|29894977|gb|AAP08265.1| SinR protein [Bacillus cereus ATCC 14579] gi|206736899|gb|EDZ54046.1| transcriptional regulator SinR [Bacillus cereus AH1134] gi|228605579|gb|EEK63027.1| HTH-type transcriptional regulator sinR [Bacillus cereus 172560W] gi|228639382|gb|EEK95796.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST24] gi|228656636|gb|EEL12462.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-Cer4] gi|228704709|gb|EEL57137.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-2] gi|228714215|gb|EEL66096.1| HTH-type transcriptional regulator sinR [Bacillus cereus F65185] gi|228726212|gb|EEL77442.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH676] gi|228807883|gb|EEM54403.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228839549|gb|EEM84841.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296323014|gb|ADH05942.1| SinR protein [Bacillus thuringiensis BMB171] Length = 107 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T +++ SE V D +++ + R F Sbjct: 61 LLHDETTKETNLDSEWTQLVKDAMNSGVSKEQFREF 96 >gi|238790799|ref|ZP_04634557.1| hypothetical protein yfred0001_12660 [Yersinia frederiksenii ATCC 33641] gi|238721114|gb|EEQ12796.1| hypothetical protein yfred0001_12660 [Yersinia frederiksenii ATCC 33641] Length = 234 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 33/62 (53%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR+RR+ L ++Q +L + +G++ V K+E G+ + L +++VL + + Sbjct: 22 RIRIRRLQLDLTQVQLAKAIGVSRVSVTKWESGITKPDGENLHRLAQVLSCTPEWLLYGT 81 Query: 78 PT 79 Sbjct: 82 GD 83 >gi|76809409|ref|YP_332574.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|167823130|ref|ZP_02454601.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|167909924|ref|ZP_02497015.1| DNA-binding protein [Burkholderia pseudomallei 112] gi|226194494|ref|ZP_03790092.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] gi|254190850|ref|ZP_04897357.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254260931|ref|ZP_04951985.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] gi|76578862|gb|ABA48337.1| DNA-binding protein [Burkholderia pseudomallei 1710b] gi|157938525|gb|EDO94195.1| DNA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|225933579|gb|EEH29568.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] gi|254219620|gb|EET09004.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] Length = 187 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 2/103 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSEG 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + + R + I +K++ Sbjct: 64 RDRELITVTRASERTSMG--RASSERVRTYESIAAGVAPKKLL 104 >gi|326692276|ref|ZP_08229281.1| Cro/CI family transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 122 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 41/117 (35%), Gaps = 2/117 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R ++Q+ L + + + V KYE + L I++ L++ + + Sbjct: 6 NRIKELRTQKKLTQQGLADIINSSRGTVAKYEGDERNPSYAMLSLIADALDTTVDYLQGK 65 Query: 77 SPTVCSDISSEENNVMDFISTPDG-LQLNRYFI-QIDDVKVRQKIIELVRSIVSSEK 131 + + ++ +L F + + I+ V+ + K Sbjct: 66 TDNALKTSHNGSDDGDHKKHVDLADDELIMSFEGKELSEDYKNSILAFVKMLREERK 122 >gi|325261427|ref|ZP_08128165.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324032881|gb|EGB94158.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 67 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + IR R +Q+++ + L IT KYE G + + ++++ + + Sbjct: 1 MIYENIRNIREDKDKTQKEIADYLNITQTTYSKYELGKINIPVEVFEKLADLYGVTVDYL 60 Query: 74 F 74 Sbjct: 61 L 61 >gi|296105700|ref|YP_003617400.1| hypothetical protein lpa_00283 [Legionella pneumophila 2300/99 Alcoy] gi|295647601|gb|ADG23448.1| hypothetical protein lpa_00283 [Legionella pneumophila 2300/99 Alcoy] Length = 81 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +P I +GK IR R G SQE + + + E+G + L I+ + Sbjct: 2 KEKHPNLIKIGKLIRDTRKEKGYSQEDFASQAQLGRTYMGRIERGEQNMTIQTLIQIALI 61 Query: 66 LESPISFF 73 L ++ Sbjct: 62 LGVEVATL 69 >gi|291551242|emb|CBL27504.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] Length = 255 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 10/133 (7%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R GMSQ++L E + ++ Q V ++E G L+ +S+VL+ I+ Sbjct: 7 ILELRTQKGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVLDVSINTLLGSPR 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV------KVRQKIIEL-VRSIVS--- 128 + D I N + + +IE+ V+++VS Sbjct: 67 KLICQCCGMPLEDDDIIGHNHDGSFNEDYCKWCYADGTYTYNDMDDLIEVCVKNMVSVNF 126 Query: 129 SEKKYRTIEEECM 141 +E++ R+ +E + Sbjct: 127 TEEQARSYMKELL 139 >gi|228907010|ref|ZP_04070876.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 200] gi|228852624|gb|EEM97412.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis IBL 200] Length = 107 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T +++ SE V D +++ + R F Sbjct: 61 LLHDEKTKETNLDSEWTQLVKDAMNSGVSKEQFREF 96 >gi|229815042|ref|ZP_04445379.1| hypothetical protein COLINT_02084 [Collinsella intestinalis DSM 13280] gi|229809272|gb|EEP45037.1| hypothetical protein COLINT_02084 [Collinsella intestinalis DSM 13280] Length = 276 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I+L R LGMSQ L + + ++ V +E+G L + + + Sbjct: 1 MILSEQIKLGRKELGMSQADLADAIWVSRNTVSNWERGDTTPDIQSLVLMGALFGLSLDE 60 Query: 73 FFDVSPTVCSDISSEENNV 91 V + + N Sbjct: 61 MVKGDEQVMAQALERDKNH 79 >gi|133711095|gb|ABO36239.1| hypothetical translational regulator [Ehrlichia ewingii] Length = 118 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 17/115 (14%) Query: 30 QEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEEN 89 Q +L LGITFQQVQKYEKG NR+ SRL ++ VL + +IS + + Sbjct: 1 QNQLANKLGITFQQVQKYEKGTNRIVISRLYQLASVLNVEVRDIMLKLQEDLKNISCDND 60 Query: 90 N-----------------VMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + I + + L + R + I + KVR I LV+++ Sbjct: 61 VVSIPHLKDNEDKFIPELHDNKIDSKEVLMMVRAYTCIKNEKVRNIIYNLVKALS 115 >gi|293396430|ref|ZP_06640708.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] gi|291421219|gb|EFE94470.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] Length = 185 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 7/111 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 GKR+ R LG+SQ ++ E G+T + E+ S LQ + V +S FF Sbjct: 9 GKRLSQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGLSLSAFFA 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + I E+ ++++ S ++L I + + + ++ + Sbjct: 69 EPDKPAEPQIVIEQADLIEIGSQGVSMKL------IHNGDPNRTLAMMIET 113 >gi|300770302|ref|ZP_07080181.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] gi|300762778|gb|EFK59595.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33861] Length = 220 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 7/112 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G+SQ+ E +T + YE+ I+ P+S Sbjct: 4 IGYNIKKLRNVKGLSQQAFAELFNLTRGNISSYEEMRAEPKIDIALKIANYFSIPLSNLI 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 D +E N D+ + + I R+++ L + + Sbjct: 64 D-----KKLSVNEILNFNDYFEANTSIAPPKNLAGIP-FLSRERVF-LAKEL 108 >gi|229012522|ref|ZP_04169696.1| hypothetical protein bmyco0001_29650 [Bacillus mycoides DSM 2048] gi|228748682|gb|EEL98533.1| hypothetical protein bmyco0001_29650 [Bacillus mycoides DSM 2048] Length = 242 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP--------DGLQLNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + ++ + + + ++ ++ + Sbjct: 64 LICYTPQMKQEDIKNLYHRLAEAFSEEPFDEVMMECREVTKKYYSCFPLLIQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDMDRRIEILEEAM 141 >gi|229021194|ref|ZP_04177833.1| transcriptional regulator, XRE [Bacillus cereus AH1273] gi|228740088|gb|EEL90446.1| transcriptional regulator, XRE [Bacillus cereus AH1273] Length = 108 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 4/103 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G IR R G++Q++L + L ++ + YE+ + + L I++ F Sbjct: 5 GNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTDFLLG 64 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 F+V + + N + + +L R++ I + Sbjct: 65 RDFNVKEDRNNKELDQWLNDIKLAPSQKREELKRFWNFIMQEE 107 >gi|229189462|ref|ZP_04316479.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 10876] gi|228594053|gb|EEK51855.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 10876] Length = 107 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T +++ SE V D +++ + R F Sbjct: 61 LLHDETTRETNLDSEWTQLVKDAMNSGVSKEQFREF 96 >gi|191639822|ref|YP_001988988.1| Prophage Lp3 protein 2 [Lactobacillus casei BL23] gi|190714124|emb|CAQ68130.1| Prophage Lp3 protein 2 [Lactobacillus casei BL23] gi|327383933|gb|AEA55409.1| Transcriptional regulator, XRE family [Lactobacillus casei LC2W] gi|327387114|gb|AEA58588.1| Transcriptional regulator, XRE family [Lactobacillus casei BD-II] Length = 212 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 49/117 (41%), Gaps = 6/117 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R +SQ L L +T Q + YE+G+ + +S+ L I + Sbjct: 4 NRIKAAREAAHLSQGDLAAQLKVTRQTISAYERGLREPRMDVWKSLSDALSVSIPYL--- 60 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ-IDDVKVRQKIIELV-RSIVSSEK 131 + SD + + + ++ + ++ + + +K++ + +S+ ++E Sbjct: 61 -QGISSDPIAIDETIAHTMTNRELKEIIDDYKHGNKTPEDAEKVLSAIKKSMSTTES 116 >gi|189465237|ref|ZP_03014022.1| hypothetical protein BACINT_01582 [Bacteroides intestinalis DSM 17393] gi|189437511|gb|EDV06496.1| hypothetical protein BACINT_01582 [Bacteroides intestinalis DSM 17393] Length = 191 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R +S E+L E G+ +Q+++ E ++ + L I+ VL + Sbjct: 5 KIVGEKIKSLRESQSISIEQLAERSGLAVEQIERIENNIDLPSLAPLIKIARVLGVRLGT 64 Query: 73 FFDVSPTVCSDI--SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F D I +E + + F + + + + + K + + + + ++E Sbjct: 65 FLDDQDETGPAICRKTESKDTISFSNNAIQSRKHMEYHSLSKSKADRHMEPFIIDVAATE 124 Query: 131 KKY 133 Sbjct: 125 DSD 127 >gi|126698959|ref|YP_001087856.1| putative phage repressor [Clostridium difficile 630] gi|254974905|ref|ZP_05271377.1| putative phage repressor [Clostridium difficile QCD-66c26] gi|255314032|ref|ZP_05355615.1| putative phage repressor [Clostridium difficile QCD-76w55] gi|255516712|ref|ZP_05384388.1| putative phage repressor [Clostridium difficile QCD-97b34] gi|260682969|ref|YP_003214254.1| putative phage repressor [Clostridium difficile CD196] gi|260686567|ref|YP_003217700.1| putative phage repressor [Clostridium difficile R20291] gi|306519912|ref|ZP_07406259.1| putative phage repressor [Clostridium difficile QCD-32g58] gi|115250396|emb|CAJ68218.1| Transcriptional regulator, Phage-type [Clostridium difficile] gi|260209132|emb|CBA62325.1| putative phage repressor [Clostridium difficile CD196] gi|260212583|emb|CBE03577.1| putative phage repressor [Clostridium difficile R20291] Length = 106 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 KR+R R G++Q +LGE +G++ + + YE L +++V + + Sbjct: 4 KRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFNVSVDYLLGR 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +++ N + + QLN Sbjct: 64 TLVKENIDTVAAHRKNPHEELPEEAQEQLN 93 >gi|56461519|ref|YP_156800.1| Cro/CI family transcriptional regulator [Idiomarina loihiensis L2TR] gi|56180529|gb|AAV83251.1| Transcriptional regulator, Cro/CI family [Idiomarina loihiensis L2TR] Length = 191 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 2/109 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K ++ + KR+ R GMS ++L + I+ + + EKG L Sbjct: 1 MTDKDKT--AINEAIAKRVYTFRKQYGMSLDELAKNAEISKGMLVQIEKGRANPSIGILC 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++ L ++ VS I ++ + G+ + Sbjct: 59 KLANALAVSVADIVAVSDDPKVTIRQPQDIPTLWNGDHGGVARLLAGSK 107 >gi|24376177|ref|NP_720221.1| transcriptional regulator, putative [Shewanella oneidensis MR-1] gi|24351222|gb|AAN57664.1|AE015902_6 transcriptional regulator, putative [Shewanella oneidensis MR-1] Length = 503 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A L I+ V Sbjct: 6 FLGTKIRNLRKRNNLTMEDLSARCIRVDASSAPSVSYLSMIERGKRVPSAEMLAVIATVF 65 Query: 67 ESPISFFFDVSPTVCSDISS 86 + + +F D P + Sbjct: 66 QKDVDWFLDDVPEESAITPD 85 >gi|324993115|gb|EGC25035.1| XRE family transcriptional regulator [Streptococcus sanguinis SK405] gi|324995581|gb|EGC27493.1| XRE family transcriptional regulator [Streptococcus sanguinis SK678] gi|327461381|gb|EGF07712.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1] gi|327489239|gb|EGF21032.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] gi|332361469|gb|EGJ39273.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 94 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+++ R G SQ ++ E LG T Q + +E + ++ L +++ + + Sbjct: 1 MLGKQLKFIREQRGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60 >gi|302671595|ref|YP_003831555.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396068|gb|ADL34973.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 370 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 34/99 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + + I+ R + ++QE+L E G+T V K+E G N L +++ + Sbjct: 3 IKLNENIKKYRKSMNLTQEELAEAFGVTVGAVSKWESGANVPDILTLMQLADFFSISVDV 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 S + + + + + Sbjct: 63 LLGYSMSSKNIKDISDRLDALLHEDKYDEAIAEAEKALA 101 >gi|289651209|ref|ZP_06482552.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 117 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 4/98 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +I+ R + GMSQ L E +G V YE+G++ G +L IS + Sbjct: 7 YVGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPGEL 66 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 DV T + + + +P+ L+ F Sbjct: 67 LPGGQDVLRTRLISLRQAIADKAIEVDSPESLEEILAF 104 >gi|257883388|ref|ZP_05663041.1| hypothetical protein EFQG_02522 [Enterococcus faecium 1,231,502] gi|257819046|gb|EEV46374.1| hypothetical protein EFQG_02522 [Enterococcus faecium 1,231,502] Length = 148 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 3/73 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 P+P VG++IR R LG++ ++ E V +E G N ++L+ I+++ Sbjct: 33 KPDP--KKVGRKIRSIRKKLGLTMQEFGYEVSNSPRSTVSTWEHGGNLPNKAKLKKIADI 90 Query: 66 LESPISFFFDVSP 78 + Sbjct: 91 ANCSVEDLLFDEG 103 >gi|322419229|ref|YP_004198452.1| Cupin 2 barrel domain-containing protein [Geobacter sp. M18] gi|320125616|gb|ADW13176.1| Cupin 2 conserved barrel domain protein [Geobacter sp. M18] Length = 187 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 26/66 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R+ ++ + + G + + + E + L I++ + ++ FF Sbjct: 6 IGPRLKKLRLARKLTLQAVATETGFSPALISQIENDNVSPPIATLSKIAKFFDVKLAQFF 65 Query: 75 DVSPTV 80 Sbjct: 66 SEDEDD 71 >gi|229086928|ref|ZP_04219086.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] gi|228696371|gb|EEL49198.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-44] Length = 181 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + EE + ++ Sbjct: 61 LLLEQKDRMKVVKKEERKYSVYGKDEQKIEHV 92 >gi|189219415|ref|YP_001940056.1| Xre family transcriptional regulator fused to periplasmic substrate-binding domain [Methylacidiphilum infernorum V4] gi|189186273|gb|ACD83458.1| Xre family transcriptional regulator fused to periplasmic substrate-binding domain [Methylacidiphilum infernorum V4] Length = 386 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 34/73 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +RL R+ G+SQ++L +G++ Q + E G+ + ++ VLE + F F SP Sbjct: 15 LRLARIGKGLSQKELAAKIGVSRQTIHAMENGLYVPNTAVALRLARVLEKTVEFLFPYSP 74 Query: 79 TVCSDISSEENNV 91 + N Sbjct: 75 DFIEADVLVDENQ 87 >gi|251800040|ref|YP_003014771.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547666|gb|ACT04685.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 182 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 31/75 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G IR R ++ ++ E G++ + + E + L+ I+ L+ P+++ Sbjct: 1 MDIGSAIRAIRKRKNITIAQICEETGLSQGFMSQVETNKTSPSITTLESIANALKVPLAY 60 Query: 73 FFDVSPTVCSDISSE 87 + + Sbjct: 61 LLLDKKEKMQIVRKD 75 >gi|166031491|ref|ZP_02234320.1| hypothetical protein DORFOR_01188 [Dorea formicigenerans ATCC 27755] gi|166028896|gb|EDR47653.1| hypothetical protein DORFOR_01188 [Dorea formicigenerans ATCC 27755] Length = 69 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 23/63 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G+SQ + G LG++ + YE L +++ + + Sbjct: 7 RLKELREERGLSQMEAGAALGVSRSTIAGYETKGREPDVHMLITMADFYNVSMDYLVGRK 66 Query: 78 PTV 80 Sbjct: 67 DEK 69 >gi|163851665|ref|YP_001639708.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|218530471|ref|YP_002421287.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|240138832|ref|YP_002963307.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|254561435|ref|YP_003068530.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|163663270|gb|ABY30637.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] gi|218522774|gb|ACK83359.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] gi|240008804|gb|ACS40030.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|254268713|emb|CAX24672.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 201 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P++ +G ++RL R +S LG GI+ + K E G + + I+ L P Sbjct: 15 PLEKALGHQVRLLRRERDLSVADLGSAAGISPGMISKIENGAISPSLASINAIASALNVP 74 Query: 70 ISFFFDVSPTVCS 82 I+ F Sbjct: 75 ITALFAAFEETRD 87 >gi|126737704|ref|ZP_01753434.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126721097|gb|EBA17801.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 207 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 2/66 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D +G R+R R + E G+ + K E G L+ ++ L+ Sbjct: 24 PLD--LGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSPTYDALKKLAIGLQIS 81 Query: 70 ISFFFD 75 + F Sbjct: 82 VPQLFT 87 >gi|126699658|ref|YP_001088555.1| putative regulatory protein [Clostridium difficile 630] gi|255101172|ref|ZP_05330149.1| putative regulatory protein [Clostridium difficile QCD-63q42] gi|115251095|emb|CAJ68926.1| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 120 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 45/113 (39%), Gaps = 6/113 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI++ R+ G++QE + + +T + E G +V L I+ L + Sbjct: 6 KAIGQRIKIARIKKGITQESVANIINMTPSHMSNVETGKTKVSLPTLIAIANALSVSVDT 65 Query: 73 FFDV----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI--DDVKVRQKI 119 S + + + + D ++L + + D ++R++ Sbjct: 66 LLCDNVLSSKVIFEKEAKDIFSDCDEYEIRSLVELLKSAKTVIRKDREIRKQF 118 >gi|110802551|ref|YP_699244.1| DNA-binding protein [Clostridium perfringens SM101] gi|110683052|gb|ABG86422.1| DNA-binding protein [Clostridium perfringens SM101] Length = 179 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 36/90 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R+ ++QE+L ++ + + E + + L I ++L + ++ Sbjct: 1 MEIGDKIRRLRVAKQLTQEELANRCELSKGFISQLENDLTSPSIATLIDILDILGTNLTE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 FF S ++ + L Sbjct: 61 FFSEDTNEKIAFSKDDMFETENEELKYNLM 90 >gi|16804446|ref|NP_465931.1| hypothetical protein lmo2408 [Listeria monocytogenes EGD-e] gi|224503444|ref|ZP_03671751.1| hypothetical protein LmonFR_13202 [Listeria monocytogenes FSL R2-561] gi|254831169|ref|ZP_05235824.1| hypothetical protein Lmon1_07403 [Listeria monocytogenes 10403S] gi|255018503|ref|ZP_05290629.1| hypothetical protein LmonF_13781 [Listeria monocytogenes FSL F2-515] gi|16411896|emb|CAD00486.1| lmo2408 [Listeria monocytogenes EGD-e] Length = 67 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +++ R G++Q +L L ++ Q + EKG I++ + P+ F++ Sbjct: 7 VKIIREKKGITQNELAHSLDVSRQTIHAIEKGKYNPSLELSLKIAKFFDLPVEEIFNLEG 66 Query: 79 T 79 Sbjct: 67 E 67 >gi|114049428|ref|YP_739978.1| XRE family transcriptional regulator [Shewanella sp. MR-7] gi|113890870|gb|ABI44921.1| transcriptional regulator, XRE family [Shewanella sp. MR-7] Length = 510 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A L I+ V Sbjct: 13 FLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAEMLAVIATVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + + +F D P + Sbjct: 73 QKDVDWFLDDVPEESAITPD 92 >gi|116512114|ref|YP_809330.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|125624033|ref|YP_001032516.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp. cremoris MG1363] gi|37936252|emb|CAD89881.1| HdiR protein [Lactococcus lactis subsp. cremoris] gi|116107768|gb|ABJ72908.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|124492841|emb|CAL97796.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp. cremoris MG1363] gi|300070804|gb|ADJ60204.1| HTH-type transcriptional regulator HdiR [Lactococcus lactis subsp. cremoris NZ9000] Length = 252 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 48/126 (38%), Gaps = 5/126 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R ++Q +L + LG+ +E+ L+ ++++ + PI Sbjct: 4 GQNLKKLRKEAKLTQSQLADKLGMKQNAYVLWEQKATNPTLELLEKLADIYDLPIQELIK 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + T + + F + + +I+L ++ S +Y Sbjct: 64 NPDNGAEKQLIDNYRSL----TGEQQESVINFTDFLIEQNKADLIDL-KTYRRSSLQYAV 118 Query: 136 IEEECM 141 +E+E + Sbjct: 119 VEDEAL 124 >gi|326781392|ref|ZP_08240657.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|326661725|gb|EGE46571.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 203 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 34/83 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D V KRIR R+ G S E+L ++ + + E G R+ +L ++ L++ + Sbjct: 8 LDSLVRKRIRALRVAQGWSLEELAARAKVSQSTLSRIENGRRRLALDQLVTLARALDTSL 67 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + + + + Sbjct: 68 DQLVETASDDIVSNPTVDGAHGQ 90 >gi|320106693|ref|YP_004182283.1| XRE family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925214|gb|ADV82289.1| transcriptional regulator, XRE family [Terriglobus saanensis SP1PR4] Length = 71 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + IR R G++Q++L + +G+T Q V E I+EVL+ P+ F Sbjct: 5 IRNNIRNLRAEAGLTQQELADLIGVTRQTVNAIEGDKYSPTLEAAFRIAEVLKVPLESVF 64 Query: 75 D 75 Sbjct: 65 S 65 >gi|307244410|ref|ZP_07526521.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] gi|306492229|gb|EFM64271.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] Length = 63 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G +R R G +Q +L +GI+ Q + E + + VL+ I F Sbjct: 2 GNNLRQFREKRGFTQTELSTAVGISRQYLSDIETLKKQPTIKIAFDCARVLKVSIEELF 60 >gi|295133936|ref|YP_003584612.1| prophage LambdaCh01, repressor protein [Zunongwangia profunda SM-A87] gi|294981951|gb|ADF52416.1| putative prophage LambdaCh01, repressor protein [Zunongwangia profunda SM-A87] Length = 251 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 22/64 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + GK IR R + +SQ+ E + + YE+ + + I+ I Sbjct: 3 HFGKNIRKIRNVKKLSQQAFAELFELKRGTLGAYEEERSEPRIETIIKIANHFSITIDDL 62 Query: 74 FDVS 77 Sbjct: 63 LTQE 66 >gi|290511290|ref|ZP_06550659.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55] gi|289776283|gb|EFD84282.1| hypothetical protein HMPREF0485_03060 [Klebsiella sp. 1_1_55] Length = 154 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 32/90 (35%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 10 GQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPWQLLA 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + +D D GL R Sbjct: 70 SDLSEDNDPELLVPYAADGSCFHPGLASTR 99 >gi|153581899|emb|CAM34257.1| phage repressor protein [Streptococcus pyogenes] gi|262113712|emb|CAR95379.1| hypothetical protein [Streptococcus phage phi-m46.1] Length = 229 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 30/58 (51%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R++ +R+ +Q ++ LGI K+E G + L ++ +L+ P+++F Sbjct: 4 GIRLKEKRIERKFNQSEIAYKLGINRASYNKWESGKSVPNQKNLTALATILDVPVTYF 61 >gi|160880106|ref|YP_001559074.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428772|gb|ABX42335.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 268 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I + R +SQ L E LG++ Q + K+E G + +L +SE+ + + Sbjct: 1 MKLGEKIVMFRTEHHLSQGDLAEKLGVSRQSISKWETGGSVPDLDKLIALSELFDVSLDN 60 Query: 73 FFDVSPTVCS 82 + Sbjct: 61 LVKDQEPKIN 70 >gi|75677167|ref|YP_319588.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74422037|gb|ABA06236.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 483 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 36/100 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R LG+SQ + E LGI+ V E+ V A L ++E + + Sbjct: 9 LFVGPRFRRVRQQLGLSQTQFAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDLRD 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +E + F Q R ++ Sbjct: 69 LATADEDRFFAELNEVFSDPLFRQIDIPRQELRDLAELCP 108 >gi|47096408|ref|ZP_00234002.1| transcriptional activator, putative [Listeria monocytogenes str. 1/2a F6854] gi|254900493|ref|ZP_05260417.1| transcriptional activator, Rgg/GadR/MutR family, C- domain protein [Listeria monocytogenes J0161] gi|254913556|ref|ZP_05263568.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254937863|ref|ZP_05269560.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|47015203|gb|EAL06142.1| transcriptional activator, putative [Listeria monocytogenes str. 1/2a F6854] gi|258610469|gb|EEW23077.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|293591568|gb|EFF99902.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 300 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 7/111 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R+ G++Q+++ + I+ +EKG + + S + I + + P+ FF Sbjct: 5 GELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFFF 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY------FIQIDDVKVRQKII 120 + S +S + ++ + + + +VR+ I+ Sbjct: 64 IYRDFSSTDDDSFWIDFVELSGKNDVEGMQALLDKITLERTEQTEVRKAIL 114 >gi|324993435|gb|EGC25355.1| XRE family transcriptional regulator [Streptococcus sanguinis SK405] gi|325694151|gb|EGD36069.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] gi|327461709|gb|EGF08040.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1] gi|327489562|gb|EGF21355.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1058] Length = 225 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ L ++Q + + LGI+ + +E G+ A L+ ++ L+ ++F D Sbjct: 5 EKLKKRRLELNLAQASIYQELGISRKTYSAWENGLAEPHAKNLRRLATCLKVQENYFVDE 64 Query: 77 SPT 79 + T Sbjct: 65 TST 67 >gi|320330709|gb|EFW86684.1| XRE family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 119 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 2/120 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R+ G++ E + G + K E+ L +SE L + S Sbjct: 1 MNIGAAIRKVRLEKGLTLEAVALDAGTYAGNLSKVERAQQLPSLDLLHKLSEALGTKTSE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + V+ + + S + + L R Q + R+ IE ++ + S+ Sbjct: 61 LYAVAESGSDNSSGAASEPSPEQGNE--VILVRRHFQALTPRNRKLAIEFLKLLGQSQDD 118 >gi|291542798|emb|CBL15908.1| Helix-turn-helix [Ruminococcus bromii L2-63] Length = 117 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 42/105 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKRI++ R+ ++QEKL E +G++ + E G RV + + I+ L Sbjct: 6 KAIGKRIKIARIKADLTQEKLSEMVGVSPTHMSNVETGTTRVSLTTIVGIANALGITSDD 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 S ++ ++ +++ R +R+ Sbjct: 66 LLCDSVIKAKVQFEKDIALVLEDCDEYEIRVIRDLAAATKETLRR 110 >gi|269123234|ref|YP_003305811.1| transcriptional regulator, XRE family [Streptobacillus moniliformis DSM 12112] gi|268314560|gb|ACZ00934.1| transcriptional regulator, XRE family [Streptobacillus moniliformis DSM 12112] Length = 77 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R + ++Q+KL E + IT Q + E G I+ L++ I FD+ Sbjct: 3 NRIKEVRKVKNITQQKLVENISITRQYISLIELGNETPSLKVANEIAMSLDTCIYSIFDL 62 Query: 77 SPTVC 81 T Sbjct: 63 DGTGD 67 >gi|170697248|ref|ZP_02888342.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170137868|gb|EDT06102.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 73 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 23/63 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + G +R R SQE+L E G+ V + E+G I+ + IS Sbjct: 7 HFGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSISTL 66 Query: 74 FDV 76 Sbjct: 67 LPG 69 >gi|167771912|ref|ZP_02443965.1| hypothetical protein ANACOL_03285 [Anaerotruncus colihominis DSM 17241] gi|167665710|gb|EDS09840.1| hypothetical protein ANACOL_03285 [Anaerotruncus colihominis DSM 17241] Length = 142 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 48/122 (39%), Gaps = 6/122 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLES 68 + + VGK+IRL R +G++Q + ++ V ++E+G V+ + L+HI+ + + Sbjct: 8 SIGVIVGKKIRLYRKKVGLTQSQFANECFMSESYVSRFERGLVDNPTQATLEHIATSIGT 67 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + S I +++ F + R+ + L + Sbjct: 68 TVPELIRESEVSGMIIKDRTRRDF-----SRYMEVFERFPAWRQEQARRIMDALFSEVSE 122 Query: 129 SE 130 + Sbjct: 123 KQ 124 >gi|117922291|ref|YP_871483.1| XRE family transcriptional regulator [Shewanella sp. ANA-3] gi|117614623|gb|ABK50077.1| transcriptional regulator, XRE family [Shewanella sp. ANA-3] Length = 103 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHI 62 + + + + R++ R G+SQ++LG LG+ + +YEKG + L+ I Sbjct: 1 MADKIINPLPLRLKQARTAKGISQKQLGIQLGMEVGTASARMNQYEKGKHTPDYQTLKAI 60 Query: 63 SEVLESPISFFFDVSPTVCS 82 ++ L P+++FF S + Sbjct: 61 ADELGVPVAYFFCESESTAK 80 >gi|58696655|ref|ZP_00372209.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] gi|58537179|gb|EAL60281.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila simulans] Length = 279 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 50/128 (39%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + +G+RIR R+I +Q+ L + +G+T +++ +YE+G + +L Sbjct: 132 TEREICTDSIYYRIGQRIREWRLIRRYTQKDLADKVGVTLKEIHEYERGYTTILFDKLYE 191 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L I + +S L+ + + + I Sbjct: 192 IAGALSVNIKVLLPETRESKKLLSLINEYREPESLDALVKSLSEDMKSGKEKVKKAEKIR 251 Query: 122 LVRSIVSS 129 + +++ + Sbjct: 252 VAKNLAKA 259 >gi|323691263|ref|ZP_08105538.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323504603|gb|EGB20390.1| XRE family Transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 126 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 5/123 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI+ R LG++ EK GE LG+T + + EKG + + I + Sbjct: 4 GERIKDVRNSLGLTLEKFGEKLGVTKTAISRLEKGERSLTEQMTKSICREFSVDYMWLTT 63 Query: 76 VSPTVCSDISSEENNVMDFIS-----TPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + + +D I T + + DD++ ++++ S+ + Sbjct: 64 GEGEMFVETDDDFFERIDRIMAGENETRKNMIKMLLYASDDDIEAFDRLVDYYISLRTEN 123 Query: 131 KKY 133 KK Sbjct: 124 KKD 126 >gi|312863201|ref|ZP_07723439.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|311100737|gb|EFQ58942.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] Length = 161 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 19/121 (15%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R +G+SQ +L + ++ + + ++EKG+ + +++ + +++ E + + Sbjct: 2 NNLKKLRQSIGLSQNELAKIFNVSEKTILRWEKGLTDIKSTKAEQLAKYFEVSVPYLLGF 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV--RSIVSSEKKYR 134 S +N I D K ++IIE+V SI EK Y Sbjct: 62 SNYKNKFEVEIDNENG-----------------ILDNKFLERIIEVVGEESIPIIEKNYI 104 Query: 135 T 135 Sbjct: 105 E 105 >gi|225018996|ref|ZP_03708188.1| hypothetical protein CLOSTMETH_02947 [Clostridium methylpentosum DSM 5476] gi|224948221|gb|EEG29430.1| hypothetical protein CLOSTMETH_02947 [Clostridium methylpentosum DSM 5476] Length = 174 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G + R G+SQE++ E LG++ Q + K+E + + ++ + + Sbjct: 21 MNLGNSLFHARKKCGLSQEEVAEKLGVSRQTISKWETDETIPDIRQSKKMASIYNVSLDE 80 Query: 73 FFDVS 77 D Sbjct: 81 LIDFD 85 >gi|168213146|ref|ZP_02638771.1| immunity repressor protein [Clostridium perfringens CPE str. F4969] gi|170715320|gb|EDT27502.1| immunity repressor protein [Clostridium perfringens CPE str. F4969] Length = 117 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 31/79 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R G++ ++L + LG T + +YE G+ + + + V Sbjct: 6 KRLKQLRNEKGLTLDELKDALGTTKATLSRYENGLREPKIDFANKAANYFNVSLDYILGV 65 Query: 77 SPTVCSDISSEENNVMDFI 95 S + S ++ + Sbjct: 66 SDVREVNELSTNESLAQKL 84 >gi|168182462|ref|ZP_02617126.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|237794872|ref|YP_002862424.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|182674430|gb|EDT86391.1| putative DNA-binding protein [Clostridium botulinum Bf] gi|229260963|gb|ACQ51996.1| putative DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 370 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 34/84 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I R ++QE+L +G++ V K+E G + + L I+ I Sbjct: 6 IGKVIYRLRKEKAITQEQLANFIGVSTAAVSKWESGTSYPDITLLSVIATFFNVTIDTLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + + + + N + + + Sbjct: 66 NFKIELSDEEVMDIFNECEKLFSN 89 >gi|152995207|ref|YP_001340042.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1] gi|150836131|gb|ABR70107.1| transcriptional regulator, XRE family [Marinomonas sp. MWYL1] Length = 508 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 7/92 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRV 54 + NK N +G +IR R ++ E L + E+G Sbjct: 1 MKNKNSLNRKAHFLGTKIRNLRKRNRLTMEDLSARCIKVDAESAPSVSYLSMIERGKRIP 60 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSDISS 86 L+ I+ V + + +F D P + + Sbjct: 61 SEDVLEVIASVFQKDVDWFLDDIPEEEAITPT 92 >gi|160895525|ref|YP_001561107.1| anaerobic benzoate catabolism transcriptional regulator [Delftia acidovorans SPH-1] gi|160361109|gb|ABX32722.1| transcriptional regulator, XRE family with shikimate kinase activity [Delftia acidovorans SPH-1] Length = 304 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 3/118 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N V +G+R+R R GM++ L ++ + + E G V L HI++ L+ Sbjct: 23 NQVLQALGERVRSLRSRRGMTRRALAAAADVSERHLANLEYGTGNVSVLVLHHIAQALQC 82 Query: 69 PISFFFDVSPTVCSD---ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 ++ T ++ I + L + R I L+ Sbjct: 83 SMAELLGDVTTTSAEWLLIRELLEGRNEEDLRRVRLAAGELLGTAPSDRQRHTRIALI 140 >gi|116510851|ref|YP_808067.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116106505|gb|ABJ71645.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 107 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ R + +SQE+L + L I+ Q + K+E G + +L +SE+ + + Sbjct: 1 MEISEIIKENRKLKNLSQEELAKELHISRQSILKWETGKSLPTTDQLILLSEIFDCSLDT 60 Query: 73 FFDVSPTVCSDISSEENN 90 + + E ++ Sbjct: 61 LLKGDKKMEEKVKHEIDD 78 >gi|91224263|ref|ZP_01259526.1| hypothetical protein V12G01_03230 [Vibrio alginolyticus 12G01] gi|91191174|gb|EAS77440.1| hypothetical protein V12G01_03230 [Vibrio alginolyticus 12G01] Length = 518 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 7/73 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G L+ I+EV Sbjct: 13 FLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEVF 72 Query: 67 ESPISFFFDVSPT 79 + ++F D P Sbjct: 73 QKDPAWFLDDEPE 85 >gi|332798117|ref|YP_004459616.1| helix-turn-helix domain-containing protein [Tepidanaerobacter sp. Re1] gi|332695852|gb|AEE90309.1| helix-turn-helix domain protein [Tepidanaerobacter sp. Re1] Length = 253 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 2/114 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +I+ R ++Q +L E G++ + + E G L+ I+ L FF Sbjct: 136 FVGYKIKKIRCERKITQAELAEKAGVSTGLIGQIESGKVEPSIKTLEKIAAALSLSPCFF 195 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIELVRS 125 + S + V + ++ P ++ K I+L + Sbjct: 196 VSEDEELSSILKPMNPKVRELLNDPKVRSALELLADCSAEEFSFILKFIQLYKE 249 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I L R +S +L E +GI+ + + E G S L+ I++ L+ Sbjct: 72 IGAKIALIRQEKNLSLSELAEKVGISPSYLCQIESGRAMPALSTLKSIAKALDVKPENLM 131 Score = 34.4 bits (77), Expect = 5.4, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 24/68 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R M+ + L + G++ + + E G + + +++ L S Sbjct: 7 IRSLRQKRNMTLQDLAQQAGLSVSYLSEIELGKKQPSLETIDKLAQALNISREGLISSSS 66 Query: 79 TVCSDISS 86 I + Sbjct: 67 AGAGGIGA 74 >gi|330881145|gb|EGH15294.1| XRE family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 125 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 2/120 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R+ G++ E + G + K E+ L +SE L + S Sbjct: 7 MNIGAAIRKVRLEKGLTLEAVALDAGTYAGNLSKVERAQQLPSLDLLHKLSEALGTKTSE 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + V+ + + S + + L R Q + R+ IE ++ + S+ Sbjct: 67 LYAVAESGSDNSSGAASEPSPEQGNE--VILVRRHFQALTPRNRKLAIEFLKLLGQSQDD 124 >gi|329962680|ref|ZP_08300603.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] gi|328529514|gb|EGF56417.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] Length = 117 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 37/86 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ ++ R + G +QE++ + +GI YE G V L+ +S + Sbjct: 4 INQIIGENLKKIRELSGFTQEQIAKSIGIERSAYSNYEGGTREVPYDILERLSSLFGCEP 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIS 96 F+ + ++I + + D Sbjct: 64 FILFEDNIQADNEIMATAFRISDLED 89 >gi|289168327|ref|YP_003446596.1| hypothetical protein smi_1494 [Streptococcus mitis B6] gi|288907894|emb|CBJ22734.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 71 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R+ L ++Q +L E +G+T Q + E G S Q I L + F Sbjct: 8 KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 67 Query: 78 PTVC 81 Sbjct: 68 EDGK 71 >gi|326204926|ref|ZP_08194779.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325984975|gb|EGD45818.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 110 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 12/116 (10%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R SQE L E L T Q + YE+G+ L +++ + + D Sbjct: 6 NLKKLRKQYKYSQEYLAEKLKTTQQNISLYERGLVAPNIETLTQLADCFRVSVDYLIDYK 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + + L + F ++ K I E++R + + ++ Sbjct: 66 KDPNHTGL-----------SQEAIDLLKIFDELPHNKKVTSI-EILRVLKDTSERE 109 >gi|237731126|ref|ZP_04561607.1| P22 repressor protein c2 [Citrobacter sp. 30_2] gi|226906665|gb|EEH92583.1| P22 repressor protein c2 [Citrobacter sp. 30_2] Length = 208 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R + SQ++LG+ G++ V +EK +N G L +++ + I + Sbjct: 4 VGQRIKALRRVTKTSQKELGKFCGVSDVAVGYWEKDINVPGGESLSKLAKYFNTSIDYIL 63 Query: 75 DVSP 78 + Sbjct: 64 YGTE 67 >gi|255307046|ref|ZP_05351217.1| putative regulatory protein [Clostridium difficile ATCC 43255] Length = 120 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 15/127 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI++ R+ G++QE + + +T + E G +V L I+ L + Sbjct: 6 KAIGQRIKIARIKKGITQESVANIINMTPSHMSNVETGKTKVSLPTLIAIANALSVSVDT 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + V S E D S D + ++EL++S ++ +K Sbjct: 66 LLCDN--VLSSKVIFEKEAKDIFSD-------------CDEYEIRSLVELLKSAKTAIRK 110 Query: 133 YRTIEEE 139 R I ++ Sbjct: 111 DREIRKQ 117 >gi|222838496|gb|EEE76861.1| predicted protein [Populus trichocarpa] Length = 508 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 13/116 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G+R+R R+ L ++Q + + ++ + +EKG A+ L ++ L + + Sbjct: 406 HIGERLRQERLRLDVAQLAMADACDVSRGTLATWEKGEQSPNAAALAVMA-GLGVDVLYV 464 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S + + +L + + D R I+ + ++ + Sbjct: 465 VTGQHANASVQTLAPDE----------RELLDCYGR-ADDSGRAAIMAVA-TLAAR 508 >gi|218281836|ref|ZP_03488175.1| hypothetical protein EUBIFOR_00743 [Eubacterium biforme DSM 3989] gi|218217125|gb|EEC90663.1| hypothetical protein EUBIFOR_00743 [Eubacterium biforme DSM 3989] Length = 104 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 1/99 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+RI+ R ++QE+L + ++ V E+G+ I+ L+ Sbjct: 4 KAVGQRIKAAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFIAIANALDVSADT 63 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 DV S +++E + +++ + ++ + Sbjct: 64 LLIDVVTHSVSGVTNELSEMIEKLPKEKQQRIINAVRAL 102 >gi|212636884|ref|YP_002313409.1| helix-turn-helix domain-containing protein [Shewanella piezotolerans WP3] gi|212558368|gb|ACJ30822.1| Helix-turn-helix motif protein [Shewanella piezotolerans WP3] Length = 182 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R G+SQ +L + G+T + EK S L+ + L + Sbjct: 1 MDIGASLKTVRKEKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVE 60 Query: 73 FFDVSPTVCSD 83 FF + S+ Sbjct: 61 FFSIEDETVSE 71 >gi|196047670|ref|ZP_03114875.1| transcriptional regulator [Bacillus cereus 03BB108] gi|196021495|gb|EDX60197.1| transcriptional regulator [Bacillus cereus 03BB108] Length = 115 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I+ R ++QE+L E G++ Q++ +E + L+ ++ + Sbjct: 5 VGQNIKNLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASFFNTSTDALL 64 Query: 75 DVSPTVCSDIS 85 + + Sbjct: 65 NFENRKEDALL 75 >gi|134281019|ref|ZP_01767728.1| DNA-binding protein [Burkholderia pseudomallei 305] gi|134247325|gb|EBA47410.1| DNA-binding protein [Burkholderia pseudomallei 305] Length = 187 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 38/103 (36%), Gaps = 2/103 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSEG 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + + R + I +K++ Sbjct: 64 RDRELITVTRASERTSMG--RASSERVRTYESIAAGVAPKKLL 104 >gi|150396246|ref|YP_001326713.1| helix-turn-helix domain-containing protein [Sinorhizobium medicae WSM419] gi|150027761|gb|ABR59878.1| helix-turn-helix domain protein [Sinorhizobium medicae WSM419] Length = 130 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 43/124 (34%), Gaps = 23/124 (18%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R G+S ++L LG+ + +E+ A+RL ++ VL ++ Sbjct: 21 LGGRIWRARDATGLSTKELASKLGVRNDTIASWERDRAEPRANRLFMLAGVLGVSPAWLM 80 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 D + + ++R+++ LV+ + + Sbjct: 81 AGIGRAPDDTAGVASG----------------------DELRKQLY-LVKKLHEQTAEAI 117 Query: 135 TIEE 138 E Sbjct: 118 AALE 121 >gi|152984440|ref|YP_001347383.1| DNA-binding protein [Pseudomonas aeruginosa PA7] gi|150959598|gb|ABR81623.1| DNA-binding protein [Pseudomonas aeruginosa PA7] Length = 205 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 41/121 (33%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R+R R ++ ++L E G+ + K E V +L + LE I+ Sbjct: 19 KEIGARLRAIRKRHELTLKQLSERSGVALSTLSKMELAQVSVSYEKLAAAARALEVDIAQ 78 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F +P + + + R+ + L I++ E++ Sbjct: 79 IFRAAPPPADAPGQVTVVHGGVDDATGYNTGSYEYHPLAGDFPRRSMTPLYARIIARERR 138 Query: 133 Y 133 Sbjct: 139 E 139 >gi|304440739|ref|ZP_07400622.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370772|gb|EFM24395.1| XRE family transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 135 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS-RLQHISEVLESPISFFF 74 G +I+ R G++Q++L + LG + + + YE R + ++E+ + +++ Sbjct: 4 GNKIKSLREEKGLTQKELADMLGTSLKTISNYEVKGTRPRTMKNFEKLAEIFDVNVNYLL 63 Query: 75 DVSP 78 Sbjct: 64 TDEE 67 >gi|302390463|ref|YP_003826284.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter oceani DSM 16646] gi|302201091|gb|ADL08661.1| Cupin 2 conserved barrel domain protein [Thermosediminibacter oceani DSM 16646] Length = 181 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 33/62 (53%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++I R G++ ++L E G++ + + E G + + + L+ I++ L PI+ F Sbjct: 4 EIAEKISKLRKQKGLTLKELSEMTGLSVSFLSQVENGYSSLAITSLKKIADALNVPITEF 63 Query: 74 FD 75 F Sbjct: 64 FS 65 >gi|294673230|ref|YP_003573846.1| DNA-binding protein [Prevotella ruminicola 23] gi|294472225|gb|ADE81614.1| DNA-binding protein [Prevotella ruminicola 23] Length = 193 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 34/79 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R +S + + E G+T +Q++ E VN L I+ L + F Sbjct: 7 VGAKIKGLRETKNLSIDVIAERSGLTVEQIESIENDVNLPSLGPLIKIARALGVRLGTFM 66 Query: 75 DVSPTVCSDISSEENNVMD 93 D + + + E+ D Sbjct: 67 DDNDALGPIVCRAEDREKD 85 >gi|238853357|ref|ZP_04643737.1| conserved domain protein [Lactobacillus gasseri 202-4] gi|282852340|ref|ZP_06261682.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|311111561|ref|ZP_07712958.1| transcriptional regulator, XRE family [Lactobacillus gasseri MV-22] gi|238834045|gb|EEQ26302.1| conserved domain protein [Lactobacillus gasseri 202-4] gi|282556082|gb|EFB61702.1| DNA-binding protein [Lactobacillus gasseri 224-1] gi|311066715|gb|EFQ47055.1| transcriptional regulator, XRE family [Lactobacillus gasseri MV-22] Length = 64 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 23/62 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G+SQ L + + + Q + E ++ L++ ++ F Sbjct: 2 NRVKEYRKQKGLSQMALAKRIDVARQTINLIENDKYNPSLDLCLKLAHELDTDLNTLFWD 61 Query: 77 SP 78 Sbjct: 62 GD 63 >gi|224537568|ref|ZP_03678107.1| hypothetical protein BACCELL_02447 [Bacteroides cellulosilyticus DSM 14838] gi|224520810|gb|EEF89915.1| hypothetical protein BACCELL_02447 [Bacteroides cellulosilyticus DSM 14838] Length = 191 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 51/123 (41%), Gaps = 2/123 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R +S E+L E G+ +Q+++ E ++ + L I+ VL + Sbjct: 5 KIVGEKIKSLRESQSISIEQLAERSGLAVEQIERIENNIDLPSLAPLIKIARVLGVRLGT 64 Query: 73 FFDVSPTVCSDI--SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F D I +E + + F + + + + + K + + + + ++E Sbjct: 65 FLDDQDETGPAICRKTEAKDSISFSNNAIQSRKHMEYHSLSKSKADRHMEPFIIDVAATE 124 Query: 131 KKY 133 Sbjct: 125 DSD 127 >gi|206562126|ref|YP_002232889.1| putative repressor protein [Burkholderia cenocepacia J2315] gi|198038166|emb|CAR54117.1| putative repressor protein [Burkholderia cenocepacia J2315] Length = 111 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR+R R+ G+SQE+LG GI +V +YE G + ++ VL P SF Sbjct: 13 KRLREARLRSGLSQEQLGIEAGIDEFSASARVNQYETGKHAPKLQTAHRLARVLHVPTSF 72 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 ++ + + + + D + Sbjct: 73 LYEGNDLLARLLVAAAPLPQDSL 95 >gi|196038315|ref|ZP_03105624.1| immunity repressor protein [Bacillus cereus NVH0597-99] gi|225865525|ref|YP_002750903.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|228916172|ref|ZP_04079742.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930568|ref|ZP_04093562.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229185777|ref|ZP_04312953.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1] gi|196030723|gb|EDX69321.1| immunity repressor protein [Bacillus cereus NVH0597-99] gi|225790340|gb|ACO30557.1| transcriptional regulator, XRE family [Bacillus cereus 03BB102] gi|228597689|gb|EEK55333.1| Transcriptional regulator, XRE [Bacillus cereus BGSC 6E1] gi|228829089|gb|EEM74732.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228843370|gb|EEM88448.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 142 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 30/84 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++Q++L E +G++ + + YE L +++ + Sbjct: 1 MIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 T + + D Sbjct: 61 LGRDVTDETKKQLTPKDEKDIAKR 84 >gi|154483937|ref|ZP_02026385.1| hypothetical protein EUBVEN_01644 [Eubacterium ventriosum ATCC 27560] gi|149734979|gb|EDM50865.1| hypothetical protein EUBVEN_01644 [Eubacterium ventriosum ATCC 27560] Length = 98 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKRI+ R G +QE E L I+ + E G + ++ +L++ + + Sbjct: 9 GKRIKELRKAKGYTQESFAEELNISHRTYSGIELGNHSTTIETFVEMASILDTTLDYLII 68 Query: 76 VSPTVC 81 + Sbjct: 69 GRKSSE 74 >gi|118472815|ref|YP_890484.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118174102|gb|ABK74998.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length = 216 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 44/121 (36%), Gaps = 15/121 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ +R R G++ ++ +GI+ + K E S L +++ L+ P++ Sbjct: 32 AIGRNVRQLRQQHGLTVAEMAARVGISKAMMSKIENAQTSCSLSTLALLAKGLDVPVTSL 91 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 F + F+ G ++ R + +L+ S+ K+ Sbjct: 92 FRGADVERPAA---------FVKAGTGPEIVRNGTKQGHE------YQLLSSLRGEHKRL 136 Query: 134 R 134 Sbjct: 137 E 137 >gi|326391550|ref|ZP_08213082.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325992431|gb|EGD50891.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 427 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ +SQ +L + + + E G +L +++E LE P+S+FF Sbjct: 5 IGDKIKALRLQKNLSQSELCGNFM-SRVVLSRIENGKALPSLEQLAYLAEKLEVPVSYFF 63 Query: 75 DVS 77 S Sbjct: 64 SDS 66 >gi|323481376|gb|ADX80815.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 71 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R G SQ +L + + +T Q + ++ G +++ +SE+L PI+ F Sbjct: 5 SNLSRYRKEKGFSQTELAKKMNVTQQCISSWQTGRTIPKPYQMKMLSEILSVPINELFSD 64 >gi|319936625|ref|ZP_08011038.1| hypothetical protein HMPREF9488_01871 [Coprobacillus sp. 29_1] gi|319808182|gb|EFW04747.1| hypothetical protein HMPREF9488_01871 [Coprobacillus sp. 29_1] Length = 118 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 5/108 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R G++QE+ G+ +G++ Q V + EK ++ + L+ IS+ PI++ Sbjct: 2 SKIKELREQCGLTQEEFGDKIGMSQQTVSRIEKNIDSLDIKTLKIISQYFHVPINYIIGE 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + E + IS ++ D + + I E ++ Sbjct: 62 DTKKYNMYVHESS-----ISVLAEYPFINQYLLSLDPEALKHINEALK 104 >gi|291518470|emb|CBK73691.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4] Length = 115 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 43/119 (36%), Gaps = 8/119 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +RI GMSQ G+ GI + ++ + A ++ I VLE Sbjct: 1 MTITERIFYLIKARGMSQNSFGKAAGIAPSTISDWKTKGHTPSADKIMDICRVLEVTPEV 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 D++ + + G QL + + + +++++ + + K Sbjct: 61 LLTGKGIDEPDVTVPKIDY-------KGKQLLLEYESL-NEDDKKRLLVYAKKLGELTK 111 >gi|237796640|ref|YP_002864192.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|229260795|gb|ACQ51828.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] Length = 189 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 51/120 (42%), Gaps = 4/120 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I+ R ++ ++L E ++ + + E+G+ V L I++ L+ +++FF Sbjct: 5 IGKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + ++ N +D++ + + L+ + + K+ Sbjct: 65 QAPKRNKKIVLRSYEKEILQVENNRFIKYNLS----NDLEDKSFLPRLIEILPTDSKENI 120 >gi|255282774|ref|ZP_05347329.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255266795|gb|EET60000.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 147 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 3/124 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R+ ++QE++ E L +T Q V ++E G L+ IS + I+ Sbjct: 7 LKKIRIENSLTQEEMAERLAVTRQAVSRWENGDATPNIETLKQISTAFDVSINTLLGSPR 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK---VRQKIIELVRSIVSSEKKYRT 135 + IS N + + V + + EL+ +V Sbjct: 67 KLFCQCCGMPLEEDGVISREVDNSFNEDYCKWCYADGQFVYKSMDELLDFLVEHMPAGNF 126 Query: 136 IEEE 139 EE Sbjct: 127 TPEE 130 >gi|160945036|ref|ZP_02092262.1| hypothetical protein FAEPRAM212_02551 [Faecalibacterium prausnitzii M21/2] gi|158442767|gb|EDP19772.1| hypothetical protein FAEPRAM212_02551 [Faecalibacterium prausnitzii M21/2] gi|295104555|emb|CBL02099.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 231 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+L R G++Q++ E LG++ + YEKG+ G + +++ + S Sbjct: 7 IKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLLGRSA 66 Query: 79 TVCSDISSEEN 89 + S E+ Sbjct: 67 ERNGMMLSAED 77 >gi|323142572|ref|ZP_08077388.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413005|gb|EFY03908.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 125 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 11 VD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + +G+RIR R+ G SQ LG +G + + E G +V + L ++ VLE Sbjct: 10 IDYVKIGQRIRAARLEKGYSQADLGALVGCSNNHMSHVEVGQTKVSLAMLLKLAFVLEKN 69 Query: 70 ISFFFDVSPTVCSDISSEEN 89 +F +P D + Sbjct: 70 FDYFLLDTPYAKCDSIIDNE 89 >gi|306824522|ref|ZP_07457868.1| hypothetical transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304433309|gb|EFM36279.1| hypothetical transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 228 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 51/118 (43%), Gaps = 26/118 (22%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L ++Q+++ E LGI+FQ +E+G+ ++ + ++L+ +F Sbjct: 5 EKLKARRKELKLTQKEIAEELGISFQAYSAWERGIKEPSKEKVAQLEKILKVAKGYF--- 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 +++ R + + + + K++ R++ E+ + Sbjct: 62 ----------------------TQIEIVRLYNSLSK-QGKDKVVLYARNLAQEEQAQK 96 >gi|228991352|ref|ZP_04151308.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM 12442] gi|228997428|ref|ZP_04157047.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17] gi|229005073|ref|ZP_04162797.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4] gi|228756175|gb|EEM05496.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4] gi|228762304|gb|EEM11231.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17] gi|228768370|gb|EEM16977.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM 12442] Length = 181 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +IN+GK+++ R +S +L + IT + + E+G+ L+ +++ LE P Sbjct: 3 NINIGKKVKELREYKELSMRELAKMAEITPSMLSQIERGLANPSIQTLKLLAKALEVPTF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + T D+ N I +L Sbjct: 63 SFL-IEDTNTDDLVIRANARKKMIVGNLSYELL 94 >gi|225856824|ref|YP_002738335.1| transcriptional regulator [Streptococcus pneumoniae P1031] gi|225726261|gb|ACO22113.1| transcriptional regulator [Streptococcus pneumoniae P1031] Length = 227 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ +R G+SQ +L LGI+ +E G + + L +SE+ +F Sbjct: 6 KLKEKRESQGLSQSQLASSLGISRASYFNWESGKTKPNQNNLSKLSEIFNVDPRYF 61 >gi|225378376|ref|ZP_03755597.1| hypothetical protein ROSEINA2194_04037 [Roseburia inulinivorans DSM 16841] gi|225209813|gb|EEG92167.1| hypothetical protein ROSEINA2194_04037 [Roseburia inulinivorans DSM 16841] Length = 118 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 2/98 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI++RR L + Q +L E L I+ + E G + I L + Sbjct: 6 KEMGTRIKVRRKELKIKQAELAEALEISNNHMSSTENGRQKPSLDTFIGICRCLNVTPDY 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 T+ + ++ + + ++L + FI++ Sbjct: 66 LL--LGTMHAYNIPQDISDKLRLCNQSDIELAKDFIEL 101 >gi|118444002|ref|YP_878514.1| DNA-binding protein [Clostridium novyi NT] gi|118134458|gb|ABK61502.1| DNA-binding protein, putative [Clostridium novyi NT] Length = 184 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 2/94 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R MS + + + G++ + + E+G + S L I+ L+ S F Sbjct: 8 IGMNLKTIRTKRNMSLDNVSKLTGVSKAMLGQIERGESNPTVSTLWKIATGLKVSFSSFI 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 D S I +N++ I + ++L F Sbjct: 68 DESKETLKII--HQNDIEPIIEDKNRMKLYPIFP 99 >gi|70731387|ref|YP_261128.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68345686|gb|AAY93292.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 65 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 22/63 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R G SQ +L L ++ Q V E G I+ E PI F Sbjct: 3 NQLRELRTRQGWSQAELATRLEVSRQTVNAIETGRYDPSLPLAFKIARAFEMPIESIFSP 62 Query: 77 SPT 79 Sbjct: 63 DED 65 >gi|330974040|gb|EGH74106.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 114 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 8/106 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R MSQ L E +G V +YE+G G +L I+ V Sbjct: 8 IGAKIKTLRKSTTMSQADLAELIGCDAPLVSRYERGTTLPGIEQLIRIATVFNVAPGELL 67 Query: 75 DVSPTV--------CSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 DI+ V + L+L + ++D Sbjct: 68 PGGQDQLRTRLISLRQDITERIAEVDSPEHLEEILELINKYSCLND 113 >gi|325972297|ref|YP_004248488.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324027535|gb|ADY14294.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 111 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 33/67 (49%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G R++ R G+ Q+ + + LG+ + ++E G + ++ L+ ++ + P S Sbjct: 5 NVAIGNRLKELRKQSGLMQKHIADYLGVDQSLIARFENGDRAMTSATLEKLAMLYCCPAS 64 Query: 72 FFFDVSP 78 P Sbjct: 65 KILSGEP 71 >gi|315926028|ref|ZP_07922230.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315620668|gb|EFV00647.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 323 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 6/107 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +I R SQE+L E +G++ Q + K+E + +RL +S++ F Sbjct: 1 MILADKIIYLRKRAEWSQEELAEQMGVSRQSISKWEGAQSIPDMNRLLKLSQIFGVSTDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 S E + + T L+ ++ R+++ Sbjct: 61 LLKDELGPEQLTPSVETDAPEGTVT-VDLETAGAYL-----DARERV 101 >gi|293607287|ref|ZP_06689628.1| XRE family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292814379|gb|EFF73519.1| XRE family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 189 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 32/96 (33%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N +D + R+R R G S ++L G++ + + E AS L Sbjct: 1 MENAINDLDLDRRIAHRLRALRQDRGWSLDELAGLAGVSRATLSRLENAEVSPTASVLGK 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 + +S + + + E + + Sbjct: 61 LCAAHGMTMSRLMMMVEDDFAPLVPEHAQAVWVDDS 96 >gi|317133164|ref|YP_004092478.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315471143|gb|ADU27747.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 197 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 34/81 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K I R + ++Q +L L T + V K+E+ + S L+ ++ + + + Sbjct: 8 IAKNIVELRKLTNLTQAELAGKLHYTDKAVSKWERAESVPDISVLKELAVLFGVTVDYLL 67 Query: 75 DVSPTVCSDISSEENNVMDFI 95 + + SS++ I Sbjct: 68 ESEHPRKAAGSSKQKRRNRLI 88 >gi|257485767|ref|ZP_05639808.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|302130289|ref|ZP_07256279.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato NCPPB 1108] gi|331012863|gb|EGH92919.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 131 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 39/108 (36%), Gaps = 11/108 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R +SQ L E +G + +YE+G+ G +L I+ + Sbjct: 18 VGAKIKALRKSSTLSQADLAEKIGCEAPLIGRYERGITLPGIEQLIRIATIFNVAPGELL 77 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 V +L+ Q+D + ++II L Sbjct: 78 PGGQDVLRTRLISLRQ-----------ELSEKINQVDSPESLEEIIRL 114 >gi|228918792|ref|ZP_04082190.1| transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228840864|gb|EEM86108.1| transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 108 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 4/103 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G IR R G++Q++L L ++ + YE+ + + L +++ F Sbjct: 5 GNIIRDLRKQKGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRLADYFNVSTDFLLG 64 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 F+V + + N + F + +L R++ + + Sbjct: 65 RDFNVKENRTNIELDQWLNDIKFAPSQKREELKRFWKFLMQEE 107 >gi|228963418|ref|ZP_04124579.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228796312|gb|EEM43759.1| Prophage LambdaBa04, DNA-binding protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 117 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 46/119 (38%), Gaps = 14/119 (11%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R ++QE+LGE L ++ Q+ YE + L IS + + + Sbjct: 8 GQNLKKLRKSKDLTQEQLGEQLNLSRNQINNYENAMFEPSMETLLQISSFFDVSLDLLCN 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV---RSIVSSEK 131 + + ++ + + +D+ + + +LV + + +++ Sbjct: 68 GYSNTKEE-----------MLRNTLKEVQQTYAALDEPRRERFCKQLVFYSKVLAETDE 115 >gi|229018185|ref|ZP_04175058.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1273] gi|229024368|ref|ZP_04180821.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1272] gi|228736935|gb|EEL87477.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1272] gi|228743110|gb|EEL93237.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1273] Length = 433 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR RM G++Q +L + + + + E G + +S L+ +S+ L+ + Sbjct: 11 MEIGERIRQVRMHKGLTQGELVSEI-CSVTYLSRIESGKIKPSSSFLKKVSKKLDVDGDY 69 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + + E N + +L Sbjct: 70 LIEGNHEEIKLTILEICNKYKKDKSITKAEL 100 >gi|227878081|ref|ZP_03996068.1| possible transcriptional regulator [Lactobacillus crispatus JV-V01] gi|227862319|gb|EEJ69851.1| possible transcriptional regulator [Lactobacillus crispatus JV-V01] Length = 196 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +R R LG++Q+++ + IT K EKG NR+ L I + +S+ Sbjct: 1 MDIGTALRHLRDDLGLTQKQMIQGTKITVSHYSKLEKGQNRIFIENLVEILKQRNISLSY 60 Query: 73 F----FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY---FIQIDDVKVRQK---IIEL 122 F + + SE N+ + + + + ++R + I+++ Sbjct: 61 FVDHYLNDENSEKEVNYSEILNIAFYEKDKIAAEEIKRQIFSDKSSSNELRDRATLIVDM 120 Query: 123 V 123 + Sbjct: 121 I 121 >gi|227893879|ref|ZP_04011684.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047] gi|227864368|gb|EEJ71789.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047] Length = 65 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 23/64 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +SQ L + +G+ Q + E +++ L + ++ F Sbjct: 2 NRVKKYRKQKNLSQMALAKKIGVARQTINLIENDKYNPSLELCLNLAHALGTDLNSLFWD 61 Query: 77 SPTV 80 Sbjct: 62 GDEQ 65 >gi|254455584|ref|ZP_05069013.1| transcriptional regulator, XRE family [Candidatus Pelagibacter sp. HTCC7211] gi|207082586|gb|EDZ60012.1| transcriptional regulator, XRE family [Candidatus Pelagibacter sp. HTCC7211] Length = 477 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 1/132 (0%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D+ +G +I+ R LG+ KL E L I+ + E G ++ L + E L Sbjct: 2 SQLDLKIGPKIKAFRRQLGLQANKLAEDLSISPSYLNLIESGKRKIDGDLLLKVCEKLNI 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 +S + + SE + F + + + K+ + I+ L + Sbjct: 62 ELSHLTSKTDINLQNTISEILDDKLFEDLDILGPEVKDLVS-TNPKIGKAIVRLGDILKE 120 Query: 129 SEKKYRTIEEEC 140 + + E+ Sbjct: 121 KDHELFDKVEKI 132 >gi|158313503|ref|YP_001506011.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158108908|gb|ABW11105.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 214 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 2/114 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +G ++ V VG R+R R G + L GI+ + + E G R+ L Sbjct: 1 MGTEQGIEAVLAAVGPRLRALRKQNGTTLPALSRVTGISVSTLSRLESGQRRLTLELLLP 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDV 113 +++ + P+ PT + P + R F I Sbjct: 61 LAKAYQVPLDELVGTPPTGDPRVLPRPFERDGMTVVPLTRRPGGLRSFKMIFPP 114 >gi|322374490|ref|ZP_08049004.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C300] gi|321279990|gb|EFX57029.1| transcriptional regulator, Cro/CI family [Streptococcus sp. C300] Length = 96 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+++L R G SQ ++ E LG T Q + +E + + L +++ + + Sbjct: 3 MLGKQLKLFREQNGYSQNQIAEYLGTTRQTISNWENDKTIIDSHSLIRLADFYQISLDEL 62 >gi|317406552|gb|EFV86747.1| hypothetical protein HMPREF0005_04959 [Achromobacter xylosoxidans C54] Length = 184 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 3/106 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R +S E+LGE G+T + K E+G++ S + ++E +S Sbjct: 6 HRLRALRRQQSLSLEQLGERTGLTKSYLSKLERGLSEPSISTVLRLAEAYGVGVSQLVGG 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++ S L ++ + R+K+ + Sbjct: 66 DGAAQDEVVSLVRVADREALQRRDLGTEYHYESL---AGRRKVKAM 108 >gi|307704468|ref|ZP_07641378.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|307706023|ref|ZP_07642846.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|322376999|ref|ZP_08051492.1| putative transcriptional repressor [Streptococcus sp. M334] gi|307620442|gb|EFN99555.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307621988|gb|EFO01015.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|321282806|gb|EFX59813.1| putative transcriptional repressor [Streptococcus sp. M334] Length = 69 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R+ L ++Q +L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 78 PTVC 81 Sbjct: 66 EDGK 69 >gi|307544901|ref|YP_003897380.1| hypothetical protein HELO_2311 [Halomonas elongata DSM 2581] gi|307216925|emb|CBV42195.1| hypothetical protein HELO_2311 [Halomonas elongata DSM 2581] Length = 191 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/101 (10%), Positives = 31/101 (30%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + ++ +R R G S ++ G++ + + E+G + + L ++ Sbjct: 3 DISRHIAATLRALREQRGWSLDRTARETGVSKAMLGQIERGESSPTVATLWKLASGFRVS 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 S + V + ++ F + Sbjct: 63 FSGLLGGGSAPSERVRHGAETVWGEDAAGMQVEPLFPFDPL 103 >gi|295101511|emb|CBK99056.1| Predicted acetyltransferase [Faecalibacterium prausnitzii L2-6] Length = 381 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 11 VDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V G IR R ++Q +L E L ++ + + K+E S L+ ++ L Sbjct: 1 MDSYVTGTAIRQLREAKHLTQAELAEKLAVSAKAISKWETAHGLPDISLLEPLAAALGVS 60 Query: 70 ISFFFDVSP 78 + P Sbjct: 61 VLELMQGEP 69 >gi|289626698|ref|ZP_06459652.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646258|ref|ZP_06477601.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330866821|gb|EGH01530.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 182 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 1/101 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++L R +SQ +L G+T + E+ S L+ + E + ++ FF Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 D +G++L + ++R Sbjct: 64 FHQPPGQDQYV-FRAGDQPDLGRNGVRLLLVGATLPSRQMR 103 >gi|284032035|ref|YP_003381966.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811328|gb|ADB33167.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 419 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 50/129 (38%), Gaps = 9/129 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R RM G+SQ+ L + +T + E G + H++ LE+ + Sbjct: 7 YLGSRLRTLRMQKGLSQKALAGDV-VTPSYISLLEAGERMPTLDVILHLARALETTPAEL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQL-NRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 +S S+ QL R + + D ++++E R + + + Sbjct: 66 LGDDYRDVFAPNSTATASG---SSAVAGQLYARSLVDLGDYAGAREVLE--RELAQA--R 118 Query: 133 YRTIEEECM 141 R +E + Sbjct: 119 SRNTGDEIL 127 >gi|270262720|ref|ZP_06190991.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043404|gb|EFA16497.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 185 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 31/75 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R+ LG+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSQIRLQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSAFFA 68 Query: 76 VSPTVCSDISSEENN 90 E Sbjct: 69 EPEAADEPKVVIEAE 83 >gi|317054120|ref|YP_004118145.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952115|gb|ADU71589.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 199 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 14/149 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N D NVG R+R R GM E++ E +G++ + + E+ V + + L + EV+ Sbjct: 15 NTPDFNVGIRLRAVRKARGMRIEEVAEKVGVSKSFISRLERNVTQASIATLLKVCEVVGI 74 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGL-------QLNRYFIQID-------DVK 114 + FD T + + L + + +ID + Sbjct: 75 TPAKLFDPPSTSFVPAGQGTPISLGGEKMREYLISGGVNDDMMVLYSEIDPLGGSGAEPY 134 Query: 115 VRQKIIELVRSIVSSEKKYRTIEEECMVE 143 ++V + + + + + Sbjct: 135 TLNAAADMVHVLSGELEIVVEEQRYLLAK 163 >gi|238063091|ref|ZP_04607800.1| hypothetical protein MCAG_04057 [Micromonospora sp. ATCC 39149] gi|237884902|gb|EEP73730.1| hypothetical protein MCAG_04057 [Micromonospora sp. ATCC 39149] Length = 416 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+ RR LG+SQE+L E L + V ++E + I+ L + Sbjct: 6 HRLCQRRKTLGLSQERLAELLDVERSTVVRWENAETDPQPWQRSRIATALRVTLEQL 62 >gi|255103192|ref|ZP_05332169.1| putative prophage LambdaCh01, repressor protein [Clostridium difficile QCD-63q42] Length = 103 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G S +++GE LG+ + +Q YE ++ L +S + I + + Sbjct: 2 NRLRELRKEKGYSTQQVGELLGVHYVTIQNYETNRRKIDNETLIKLSNIYNVSIDYILCL 61 Query: 77 SPTVCSDISSEENNV 91 + + EE Sbjct: 62 TDNRENIQLEEEEKQ 76 >gi|217980293|ref|YP_002364269.1| putative phage repressor [Shewanella baltica OS223] gi|217500930|gb|ACK48902.1| putative phage repressor [Shewanella baltica OS223] Length = 209 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 38/73 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R I G++Q ++ E +G++ V ++E G ++ +L + +LE ++ Sbjct: 1 MKLGDRLKNTRKIKGLTQLQIAEGVGVSKVAVSRWELGYSQPKGEKLNALCNLLEIDSNW 60 Query: 73 FFDVSPTVCSDIS 85 C +++ Sbjct: 61 LLTGLKDECKNVA 73 >gi|91777117|ref|YP_552325.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91689777|gb|ABE32975.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 208 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 31/89 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 31 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 90 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 T + S + + QL Sbjct: 91 APQKTPEAIAVSGPHEIPTLSGRDARYQL 119 >gi|90581156|ref|ZP_01236955.1| Hypothetical transcriptional regulator [Vibrio angustum S14] gi|90437677|gb|EAS62869.1| Hypothetical transcriptional regulator [Vibrio angustum S14] Length = 125 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 32/81 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ R G++Q + + L + Q E G L ISE+ E P+++F Sbjct: 8 IAARIKEAREWKGLTQVHMAQQLKVARQTYLDLETGKTEPKVRLLSEISEITERPLTWFV 67 Query: 75 DVSPTVCSDISSEENNVMDFI 95 + S + + + Sbjct: 68 YGDEGIEILESEYKEEIDRLL 88 >gi|54022912|ref|YP_117154.1| hypothetical protein nfa9450 [Nocardia farcinica IFM 10152] gi|54014420|dbj|BAD55790.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 394 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 29/60 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI R G++Q +L +GI + K E G RV A L I+E L I +F Sbjct: 31 ELGDRIAQARSRHGLTQAQLAAAIGIDRSALAKIEGGTRRVSALELAGIAEELGERIEWF 90 >gi|116626567|ref|YP_828723.1| XRE family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116229729|gb|ABJ88438.1| transcriptional regulator, XRE family [Candidatus Solibacter usitatus Ellin6076] Length = 198 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 1/121 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R+ M +L + ++ + K E+ V L IS V + +FF Sbjct: 15 IGAKLRRLRLRKSMGLLELSKHTRLSPALLSKLERDVMHPTLPTLFRISMVFSVGLEYFF 74 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + P +I + + F +PD ++ +F +D +K+ + + E+ Sbjct: 75 NPEPRPVLEIVR-RKDRLRFPDSPDARPVSYHFESLDFPVADRKLNSYLAEFEAVEETRV 133 Query: 135 T 135 Sbjct: 134 H 134 >gi|325262169|ref|ZP_08128907.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324033623|gb|EGB94900.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 70 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G IRL R M+QE++ L + Q + YE G + I+++ + + Sbjct: 6 IGHNIRLLRRKHHMTQEQVANKLYMKRQTLSNYEIGKRIPDIYEIIKIADLFDISLDEL 64 >gi|320105807|ref|YP_004181397.1| helix-turn-helix domain-containing protein [Terriglobus saanensis SP1PR4] gi|319924328|gb|ADV81403.1| helix-turn-helix domain protein [Terriglobus saanensis SP1PR4] Length = 95 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 26/69 (37%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P + G+R+R R ++Q + E GI + E G + L+ ++ + Sbjct: 26 PRDISSRFGRRLRELRQSRNLTQLAMAEQFGIDRSFISDVECGRKSISLPTLEVMALGFK 85 Query: 68 SPISFFFDV 76 +S Sbjct: 86 LSLSDILRG 94 >gi|291485885|dbj|BAI86960.1| putative transcriptional regulator [Bacillus subtilis subsp. natto BEST195] Length = 67 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 11 VDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D+ +G IR +R G+SQ E +G T V + E G L+ IS+ L Sbjct: 2 IDLSELGHMIRKKRKESGLSQTVFAEKIGCTGSYVSRLENGKVSPTLKSLEQISQTLNIK 61 Query: 70 ISFFFD 75 FFD Sbjct: 62 AKLFFD 67 >gi|226309766|ref|YP_002769660.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226092714|dbj|BAH41156.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 69 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R + G +Q+ L + +G++ V E+G L+ I+ L+ Sbjct: 5 QLGNRIRSFRKLKGYTQQSLSDKMGVSLSFVGSLERGTRTPTEPVLRKIASTLQVDYDEL 64 >gi|207856821|ref|YP_002243472.1| hypothetical protein SEN1367 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|206708624|emb|CAR32946.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 200 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ V +RI+ R MS ++L G++ + + E + L I+ + Sbjct: 16 STINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGV 75 Query: 69 PISFFFDVSPTV 80 ++ F +V+ Sbjct: 76 SVADFVNVASEP 87 >gi|62180230|ref|YP_216647.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127863|gb|AAX65566.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714702|gb|EFZ06273.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 200 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ V +RI+ R MS ++L G++ + + E + L I+ + Sbjct: 16 STINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGV 75 Query: 69 PISFFFDVSPTV 80 ++ F +V+ Sbjct: 76 SVADFVNVASEP 87 >gi|15807441|ref|NP_296174.1| PbsX family transcriptional regulator [Deinococcus radiodurans R1] gi|6460274|gb|AAF11998.1|AE002075_2 transcriptional regulator, PbsX family [Deinococcus radiodurans R1] Length = 64 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 22/62 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI++ R ++Q L + L ++ Q + E G ++ + I F Sbjct: 3 NRIKVLRAEHNLTQADLADKLDVSRQTINALETGKYDPSLPLAFKLARLFGLRIEDIFQD 62 Query: 77 SP 78 Sbjct: 63 EG 64 >gi|116514765|ref|YP_813671.1| XRE family transcriptional regulator [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116094080|gb|ABJ59233.1| Transcriptional regulator, xre family [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 119 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 3/111 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK +R R GMSQ++L LG++ Q + +E G + I+ + + Sbjct: 5 MIGKYLRDLRRRRGMSQQELALALGVSKQTISNWEVGRKVPRMKAVDKIANIFGVSRNSI 64 Query: 74 FDVSPTVCSDISSE---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 P + + + D T G Q+ R +I I + +R I E Sbjct: 65 LAGLPVEMLEQADRRVVDLTDRDIRLTYLGQQVPREYIDIIEKLMRWDIAE 115 >gi|16804368|ref|NP_465853.1| hypothetical protein lmo2329 [Listeria monocytogenes EGD-e] gi|47096028|ref|ZP_00233630.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes str. 1/2a F6854] gi|258612330|ref|ZP_05270017.2| transcriptional regulator [Listeria monocytogenes F6900] gi|16411818|emb|CAD00407.1| lmo2329 [Listeria monocytogenes EGD-e] gi|47015625|gb|EAL06556.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes str. 1/2a F6854] gi|258610932|gb|EEW23540.1| transcriptional regulator [Listeria monocytogenes F6900] Length = 158 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 42/124 (33%), Gaps = 2/124 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R ++Q + + LG+ YE+ A I++ + + + Sbjct: 3 GDILMKLRKNKNLTQSDIAKILGVARTTYSSYEQNRRMPDAEIQIKIADYFDVSLDYLHG 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 +D + + S D ++ Y + V ++ I + + +K+ Sbjct: 63 RGKNNIADTIAAHIDSN--ASEEDIKEILAYIEEKRKEHVNEEEINITDAASKGDKEVNE 120 Query: 136 IEEE 139 +E Sbjct: 121 FVDE 124 >gi|331647039|ref|ZP_08348133.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre)family) [Escherichia coli M605] gi|331043822|gb|EGI15958.1| transcriptional regulator of post-exponential-phase responses (PbsX(xre)family) [Escherichia coli M605] Length = 108 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISF 72 ++G IR R +SQ++L + G++ Q+ + E G + I+ L + I Sbjct: 3 HIGDNIRRMREAAKLSQQELADKSGVSKAQISRLENGTQKNPQIQTVIAIATELGTTIEE 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + S+ + +L + Sbjct: 63 LIFGEEPTATTYLSQALQNLPDEDRKAIKKLIK 95 >gi|295090185|emb|CBK76292.1| Predicted transcriptional regulators [Clostridium cf. saccharolyticum K10] Length = 118 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/80 (13%), Positives = 36/80 (45%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G +++ R G++Q++L + ++ +Q+ E+G L+ +++V+ Sbjct: 1 MPIDELKELGLKLKATRKEKGLTQQELSDISHVSTKQIANIERGKMNPSYLILKALAKVV 60 Query: 67 ESPISFFFDVSPTVCSDISS 86 + + + ++ Sbjct: 61 PLSLDSLLAPEISPDDEGAN 80 >gi|295705216|ref|YP_003598291.1| HTH-type transcriptional regulator AnsR [Bacillus megaterium DSM 319] gi|294802875|gb|ADF39941.1| HTH-type transcriptional regulator ansR (Ans operon repressor) [Bacillus megaterium DSM 319] Length = 118 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 10/118 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 R+ R S + + L I YE G R L I+E+ ++ + Sbjct: 3 SRLAQLRKEKKWSLQYTADQLEIAKSTYAGYESGYRRPSLEALVTIAELFDTSTDYLLGK 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + P SD E T DG +L + Q++ +R+ EK+ Sbjct: 63 EKEPHSLSDAPIELTLPQTHTITVDGAEL--------SQEEIQQLTAFIRAKRQIEKE 112 >gi|289167282|ref|YP_003445549.1| repressor (phage associated) [Streptococcus mitis B6] gi|288906847|emb|CBJ21681.1| repressor (phage associated) [Streptococcus mitis B6] Length = 246 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 46/120 (38%), Gaps = 29/120 (24%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQ--------VQKYEKGVNRVGASRLQHISEV 65 +G +IR R ++ E+L + L + + K+E S ++ I++ Sbjct: 1 MIGTKIRELRKNNKLTLEELADALNQKYPNTINFNKGKISKWENNKEEPRLSSVKIIADF 60 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + P+ +F D + ++ + Q+++ K ++K+++ + Sbjct: 61 FDVPLDYFNDTPDSHP--------------------EILTIYNQLEEPK-QEKVLDYAKE 99 >gi|229827236|ref|ZP_04453305.1| hypothetical protein GCWU000182_02622 [Abiotrophia defectiva ATCC 49176] gi|229788854|gb|EEP24968.1| hypothetical protein GCWU000182_02622 [Abiotrophia defectiva ATCC 49176] Length = 371 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + I+ R + ++QE L E G+T V K+E G + +++ + Sbjct: 7 ENIKKYRKEMNLTQEGLAEAFGVTVGAVSKWESGSTVPDIMTMMELADFFNISMDILL 64 >gi|227486494|ref|ZP_03916810.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227235542|gb|EEI85557.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 76 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 27/65 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R LG+SQ +LG+ +GI+ + K E G I+ L + FD+ Sbjct: 3 NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALGVCMYQIFDL 62 Query: 77 SPTVC 81 Sbjct: 63 DGEET 67 >gi|261366132|ref|ZP_05979015.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282572066|gb|EFB77601.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 116 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R R M+QE + E LG++ Q V K+E G + + L ++ + P Sbjct: 53 LGEVLRQHRTDCRMTQEFVAESLGVSRQAVSKWESGKSDPSTTNLMALARLYGLPPEELL 112 Query: 75 DVSP 78 + Sbjct: 113 REAE 116 >gi|167746263|ref|ZP_02418390.1| hypothetical protein ANACAC_00968 [Anaerostipes caccae DSM 14662] gi|167654256|gb|EDR98385.1| hypothetical protein ANACAC_00968 [Anaerostipes caccae DSM 14662] Length = 191 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 30/73 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+I+ R+ +SQ++L E + +T Q + +E G N L +S + + Sbjct: 5 KQIKKYRLDSKLSQDELAEKVYVTRQTISNWENGKNYPDVKSLLLLSTLFHISLDTLVKG 64 Query: 77 SPTVCSDISSEEN 89 + E+ Sbjct: 65 DLEEMREQIKAED 77 >gi|220919779|ref|YP_002495082.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] gi|219952199|gb|ACL62590.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 204 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 30/79 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R ++ +++ + GI+ + K E+ + L+ I+ E + F Sbjct: 22 LGQRLRELRRSRKLTLQQVSDRSGISLSSLSKIERDELSPTVTTLERIAAGYEIDSAAIF 81 Query: 75 DVSPTVCSDISSEENNVMD 93 V D Sbjct: 82 GGREAVHRAPGRRSITRAD 100 >gi|163736370|ref|ZP_02143789.1| DNA-binding protein, putative [Phaeobacter gallaeciensis BS107] gi|163741095|ref|ZP_02148487.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161385448|gb|EDQ09825.1| DNA-binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161390240|gb|EDQ14590.1| DNA-binding protein, putative [Phaeobacter gallaeciensis BS107] Length = 207 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 2/66 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D +G R+R R + E G+ + K E G L+ ++ L+ Sbjct: 24 PLD--LGARVRELRKARDWTLEHAANQAGLARSTLSKIENGQMSPTYEALKKLAVGLQIS 81 Query: 70 ISFFFD 75 + F Sbjct: 82 VPQLFT 87 >gi|86751307|ref|YP_487803.1| XRE family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574335|gb|ABD08892.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris HaA2] Length = 481 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 37/100 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R LG+SQ ++ E LGI+ + E+ V A L ++E + + Sbjct: 9 LFVGPRFRRIRQQLGLSQTQIAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDLRD 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +E + F Q R ++ Sbjct: 69 LATADEDRFFAELNEIFSDPLFRQIDLPKQELRDLAELCP 108 >gi|71737630|ref|YP_274980.1| prophage PSPPH05, DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558183|gb|AAZ37394.1| prophage PSPPH05, DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 115 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 9/119 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ ++ +R G+SQ+ L + +E N A ++ I+ L Sbjct: 1 MSIGENLKAKRETAGLSQKALAGLIDTAVNTYIGWEHDKNPPPADKVAAIARCLGCSTDE 60 Query: 73 F-FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F+ S S+ M+ + Q +R ++ L E Sbjct: 61 LIFERSERSVSEDMRALFRRMEQLPENMQSQ--------ARAVIRGLVLSLEEEAARQE 111 >gi|89095675|ref|ZP_01168569.1| hypothetical protein B14911_03059 [Bacillus sp. NRRL B-14911] gi|89089421|gb|EAR68528.1| hypothetical protein B14911_03059 [Bacillus sp. NRRL B-14911] Length = 136 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/134 (9%), Positives = 49/134 (36%), Gaps = 11/134 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +++ R + QE + E + I + +YE G + + +++ + Sbjct: 1 MSLADKLKELRNVRNWKQEYVAELMRIDRSTISRYENGKSIPPYQIVLQFADIFGVDKEY 60 Query: 73 FFDVSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKV---------RQKIIE 121 + + + ++ + + +L + + + + I Sbjct: 61 LIEELDEMLKNANTSYVLKENPEDLDMEMIRRLLAQTPSLKEPLLELALFDNWTNEYIAG 120 Query: 122 LVRSIVSSEKKYRT 135 ++++++ KK+R Sbjct: 121 ILKAVIKEHKKFRR 134 >gi|329577865|gb|EGG59286.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 131 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 47/125 (37%), Gaps = 5/125 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + +EN + P + ++ + ++ + ++ ++ + K Sbjct: 66 WLLYGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMGRLSEEQL--SYHDSLKIMIQAHK 121 Query: 132 KYRTI 136 Y + Sbjct: 122 SYSSP 126 >gi|257888763|ref|ZP_05668416.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257824817|gb|EEV51749.1| transcriptional regulator [Enterococcus faecium 1,141,733] Length = 72 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R ++QE+L + L I+ +YE G + L +++ + I + +++ Sbjct: 4 RIRDLREDKDLNQEQLAKLLNISQTTYSRYESGKLDIPTQSLIKLADFYSTSIDYLLNLT 63 Query: 78 PTVCS 82 Sbjct: 64 DQKEP 68 >gi|237735295|ref|ZP_04565776.1| predicted protein [Mollicutes bacterium D7] gi|229381040|gb|EEO31131.1| predicted protein [Coprobacillus sp. D7] Length = 70 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +++ G RI+ R+ +SQE+L G++ + E+G V ++ I+ Sbjct: 2 DKIEVKFGHRIKELRLKQNISQEELAFRCGLSKNYISDVERGTRNVSLKSIEKIANGFAV 61 Query: 69 PISFFFD 75 + FD Sbjct: 62 NLKELFD 68 >gi|154500782|ref|ZP_02038820.1| hypothetical protein BACCAP_04460 [Bacteroides capillosus ATCC 29799] gi|150270399|gb|EDM97722.1| hypothetical protein BACCAP_04460 [Bacteroides capillosus ATCC 29799] Length = 103 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 28/58 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 IR R +Q+++ + L + + YE GVN + L ++++ ++ + + + Sbjct: 29 IRALREDRDWTQQQVADMLYLNRRTYSAYENGVNTITPELLIQLADLYQTSVDYLLGL 86 >gi|332523396|ref|ZP_08399648.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332314660|gb|EGJ27645.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 113 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 44/97 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + KRIRL R+ G++QE+L E + V K E V L+ + + LE F Sbjct: 9 YISKRIRLLRLNKGLTQEQLEEKADLGTNYVYKLENQSTNVKVKTLEKVMKALEVDFEEF 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 FD+S ++ SE + +S+ ++ + + Sbjct: 69 FDISLVEKNEDLSELLVQIKELSSGQQDRVIKALSTL 105 >gi|295134629|ref|YP_003585305.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] gi|294982644|gb|ADF53109.1| lambda repressor-like DNA-binding protein [Zunongwangia profunda SM-A87] Length = 144 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 58/134 (43%), Gaps = 7/134 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP---I 70 ++G++I R + GM QE L LGI+ Q V E+ + + +L+ +++VL I Sbjct: 15 HIGRKISRIRELRGMKQEALAAELGISQQSVSSLEQSEH-IEDEKLEKVAKVLGVSKEAI 73 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F + + + E + + + N + + ++K L ++ +E Sbjct: 74 ENFSEEAIFNNIQNNYEGSTINAGPTVHHQCTFNPLDRLVQAYEEKEK---LYERLLKAE 130 Query: 131 KKYRTIEEECMVEQ 144 K+ E+ + ++ Sbjct: 131 KEKVAYLEKLLDKK 144 >gi|291557731|emb|CBL34848.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 302 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 3/96 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R G++QE+L + LG+T Q V K+E G L I+++ + I + Sbjct: 7 KQLQKLRKQSGITQEQLADKLGVTAQAVSKWENGSY-PDGDLLPKIADIFDVSIDNLYGR 65 Query: 77 SPTVCSDISSEENNVMDFISTPD--GLQLNRYFIQI 110 CS N++ + + + ++ I Sbjct: 66 GEEKCSFEQQVLNHMRAIADSSQDSCAEWLKSYLNI 101 >gi|229182053|ref|ZP_04309349.1| transcriptional regulator, XRE [Bacillus cereus 172560W] gi|228601468|gb|EEK58993.1| transcriptional regulator, XRE [Bacillus cereus 172560W] Length = 108 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 4/103 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G IR R G++Q++L + L ++ + YE+ + + L I++ + F Sbjct: 5 GNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFKVSTDFLLG 64 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 FD + N + + +L R++ I + Sbjct: 65 RDFDAEGKRTDSELEQWLNDIKLAPSQKREELKRFWKFIMQEE 107 >gi|183598905|ref|ZP_02960398.1| hypothetical protein PROSTU_02342 [Providencia stuartii ATCC 25827] gi|188021114|gb|EDU59154.1| hypothetical protein PROSTU_02342 [Providencia stuartii ATCC 25827] Length = 82 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN I +G IR R G+S E + L I+ + +YE+G + L +S + Sbjct: 2 KQPNFRGIALGNYIRKLRTSRGISTEAMAAALKISERNYIQYEEGSVSIYVEHLMIVSSI 61 Query: 66 LESPISFFFDVSPTVCSDI 84 L+ I +V Sbjct: 62 LDVDIKHLLEVFEKPGKPT 80 >gi|167767917|ref|ZP_02439970.1| hypothetical protein CLOSS21_02459 [Clostridium sp. SS2/1] gi|167710246|gb|EDS20825.1| hypothetical protein CLOSS21_02459 [Clostridium sp. SS2/1] Length = 146 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 1/92 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + VG+RI+L R GMSQ + ++ Q + KYE + + + +++ ++++ + Sbjct: 4 MTVGERIQLLRKKTGMSQIDFATKINVSKQTLYKYENNLITNIPSDKIEAVADLCHVSPA 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + + I+ L Sbjct: 64 YLMGWEEPEPQSSTILNKKDEKDIAKRLEQTL 95 >gi|218779193|ref|YP_002430511.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218760577|gb|ACL03043.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 115 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +GKRI R+ ++Q +L E +G++ + + + E+GV L ++E L S + Sbjct: 4 LEKKIGKRIAELRIENNLTQAQLAEAMGLSVESISRMERGVTLPSVKTLAKVAESLGSSL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FFD L+L + Q+ + + + L+R I+ Sbjct: 64 KQFFDFDEDEGQGDG-------------YQLELAKLIAQVKSLDEGE--VALLRKILREI 108 Query: 131 KKYRT 135 ++++ Sbjct: 109 ERWKE 113 >gi|148989598|ref|ZP_01820930.1| transcriptional regulator [Streptococcus pneumoniae SP6-BS73] gi|147924915|gb|EDK75997.1| transcriptional regulator [Streptococcus pneumoniae SP6-BS73] gi|301794784|emb|CBW37238.1| putative DNA-binding protein [Streptococcus pneumoniae INV104] gi|332201226|gb|EGJ15297.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 383 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F + Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYF-E 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 SS ++T + + + Sbjct: 63 QEEESIRFDSSVIAFRNADLATRKTIDIQTMY 94 >gi|148984258|ref|ZP_01817553.1| transcriptional regulator [Streptococcus pneumoniae SP3-BS71] gi|147923547|gb|EDK74660.1| transcriptional regulator [Streptococcus pneumoniae SP3-BS71] gi|301800603|emb|CBW33244.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141] Length = 383 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F + Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYF-E 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 SS ++T + + + Sbjct: 63 QEEESIRFDSSVIAFRNADLATRKTIDIQTMY 94 >gi|149011333|ref|ZP_01832580.1| transcriptional regulator [Streptococcus pneumoniae SP19-BS75] gi|168494277|ref|ZP_02718420.1| transcriptional regulator [Streptococcus pneumoniae CDC3059-06] gi|147764323|gb|EDK71254.1| transcriptional regulator [Streptococcus pneumoniae SP19-BS75] gi|183575731|gb|EDT96259.1| transcriptional regulator [Streptococcus pneumoniae CDC3059-06] Length = 383 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F + Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYF-E 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 SS ++T + + + Sbjct: 63 QEEESIRFDSSVIAFRNADLATRKTIDIQTMY 94 >gi|77919057|ref|YP_356872.1| xenobiotic response element family transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77545140|gb|ABA88702.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM 2380] Length = 188 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 38/101 (37%), Gaps = 1/101 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+++ R+ ++ + + E ++ + + E+G+ L + V E I++F Sbjct: 7 IGKKLKAIRLKNNLTIQVVSERAHVSANMISRIERGLTTPSVEILLRLGSVFEKSINYFV 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ-IDDVK 114 + + S + + F + D + Sbjct: 67 EEVENTHEIVHSRPGERSCTVFDDNQNLRTESFTAGLRDPQ 107 >gi|89096956|ref|ZP_01169847.1| dna-binding protein [Bacillus sp. NRRL B-14911] gi|89088336|gb|EAR67446.1| dna-binding protein [Bacillus sp. NRRL B-14911] Length = 69 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R G+SQE+L + G++ Q + E + ++E L + F Sbjct: 3 NQIKEVRKSSGLSQEELAKACGVSRQTINAIENNKYDPSLALAFQLAESLGMTVDQLF 60 >gi|332668655|ref|YP_004451662.1| helix-turn-helix domain-containing protein [Cellulomonas fimi ATCC 484] gi|332337692|gb|AEE44275.1| helix-turn-helix domain protein [Cellulomonas fimi ATCC 484] Length = 505 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 41/115 (35%), Gaps = 3/115 (2%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISS 86 G++ ++LG+ +G+T + E G + L+ +++ L + D P Sbjct: 42 GLTLDQLGKAVGVTPSLLSLVENGRREPRLALLRDLADALGVTVPDLLDDEPPTRRAALE 101 Query: 87 E--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIEEE 139 + + GL R + V ++++ L + + EE Sbjct: 102 IALDRAQQTPVFAQLGLPTVRPGRSLPLP-VLEQLVGLHGELARRATEAVATPEE 155 >gi|331702111|ref|YP_004399070.1| XRE family transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129454|gb|AEB74007.1| transcriptional regulator, XRE family [Lactobacillus buchneri NRRL B-30929] Length = 66 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R +G+SQ L E +G+ Q + E ++E L + ++ F Sbjct: 2 NRVREYRKQVGISQFALAEKVGVARQTINLIENDKYNPSLKLCISLAEELGTDLNTLFWK 61 Query: 77 SPTVC 81 Sbjct: 62 VDENS 66 >gi|310640139|ref|YP_003944897.1| hth-type transcriptional regulator [Paenibacillus polymyxa SC2] gi|309245089|gb|ADO54656.1| Putative HTH-type transcriptional regulator [Paenibacillus polymyxa SC2] Length = 184 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 36/88 (40%), Gaps = 6/88 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ N +++ + K ++ R +S +KL + GI+ + + E+G + + + Sbjct: 1 MMEN------INLILSKNLKHLRNERKLSLDKLADLTGISKTMLGQIERGESNPSITTVW 54 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEE 88 I+ L+ + P + + Sbjct: 55 KIANGLKISFTALISEPPADAVVVPKSK 82 >gi|303254672|ref|ZP_07340774.1| transcriptional regulator [Streptococcus pneumoniae BS455] gi|303258758|ref|ZP_07344738.1| transcriptional regulator [Streptococcus pneumoniae SP-BS293] gi|303261922|ref|ZP_07347868.1| transcriptional regulator [Streptococcus pneumoniae SP14-BS292] gi|303263784|ref|ZP_07349706.1| transcriptional regulator [Streptococcus pneumoniae BS397] gi|303265681|ref|ZP_07351580.1| transcriptional regulator [Streptococcus pneumoniae BS457] gi|303268616|ref|ZP_07354408.1| transcriptional regulator [Streptococcus pneumoniae BS458] gi|301802510|emb|CBW35269.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302598384|gb|EFL65428.1| transcriptional regulator [Streptococcus pneumoniae BS455] gi|302637005|gb|EFL67494.1| transcriptional regulator [Streptococcus pneumoniae SP14-BS292] gi|302640259|gb|EFL70714.1| transcriptional regulator [Streptococcus pneumoniae SP-BS293] gi|302641895|gb|EFL72250.1| transcriptional regulator [Streptococcus pneumoniae BS458] gi|302644808|gb|EFL75056.1| transcriptional regulator [Streptococcus pneumoniae BS457] gi|302646822|gb|EFL77047.1| transcriptional regulator [Streptococcus pneumoniae BS397] Length = 383 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F + Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYF-E 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 SS ++T + + + Sbjct: 63 QEEESIRFDSSVIAFRNADLATRKTIDIQTMY 94 >gi|225175587|ref|ZP_03729581.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] gi|225168916|gb|EEG77716.1| transcriptional regulator, XRE family [Dethiobacter alkaliphilus AHT 1] Length = 121 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 43/112 (38%), Gaps = 4/112 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI+L R G +Q + +GI + + E G+ V L + + Sbjct: 6 GQRIKLLREEHGYTQRDFAKVIGINNSVLSRIEAGIRPVEDELLSKFASFFHCTADYLLG 65 Query: 76 VSPTVCSDISSEENNVMDF---ISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 S + ++ + + +++ ++ + +++I EL++ Sbjct: 66 RSDFRRGRLVTDTELKEFLPPEVVNKNKIEMWVDEAELK-PETKKEITELLK 116 >gi|167760581|ref|ZP_02432708.1| hypothetical protein CLOSCI_02955 [Clostridium scindens ATCC 35704] gi|167661802|gb|EDS05932.1| hypothetical protein CLOSCI_02955 [Clostridium scindens ATCC 35704] Length = 184 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 38/105 (36%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R G+S E+ I+ + + E+G S + +S L+ P+ Sbjct: 4 LNQIIAENLKEIRKGKGLSLEQASALTSISKSMLSQLERGEVNPTISTVYKLSLGLKVPV 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + F P S E + L F D ++ Sbjct: 64 TAFTLDKPKPFSKTGKSEVVPLSGDDGRYRLYPIFNFRDGQDFEI 108 >gi|167549848|ref|ZP_02343606.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168235794|ref|ZP_02660852.1| transcriptional regulator, Cro/CI family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168819468|ref|ZP_02831468.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194734886|ref|YP_002114693.1| transcriptional regulator, Cro/CI family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|198246100|ref|YP_002215480.1| Cro/CI family transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205352653|ref|YP_002226454.1| hypothetical protein SG1453 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|194710388|gb|ACF89609.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291185|gb|EDY30538.1| transcriptional regulator, Cro/CI family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940616|gb|ACH77949.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205272434|emb|CAR37321.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324984|gb|EDZ12823.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205343756|gb|EDZ30520.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085841|emb|CBY95617.1| Uncharacterized HTH-type transcriptional regulator ydcN [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322614917|gb|EFY11842.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619357|gb|EFY16237.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623169|gb|EFY20011.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628458|gb|EFY25246.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634866|gb|EFY31597.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638569|gb|EFY35264.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640896|gb|EFY37544.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645375|gb|EFY41903.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651740|gb|EFY48112.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654360|gb|EFY50682.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661201|gb|EFY57427.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662671|gb|EFY58878.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322671870|gb|EFY67991.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677085|gb|EFY73149.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680253|gb|EFY76292.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685318|gb|EFY81314.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194137|gb|EFZ79335.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199377|gb|EFZ84471.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203486|gb|EFZ88510.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205869|gb|EFZ90832.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323217196|gb|EGA01917.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219108|gb|EGA03611.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227274|gb|EGA11444.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232058|gb|EGA16165.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234585|gb|EGA18672.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238038|gb|EGA22097.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243361|gb|EGA27380.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246168|gb|EGA30153.1| hypothetical protein SEEM9199_07956 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323259102|gb|EGA42748.1| hypothetical protein SEEM8283_04720 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260430|gb|EGA44043.1| hypothetical protein SEEM8284_18305 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266482|gb|EGA49969.1| hypothetical protein SEEM8285_00870 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271206|gb|EGA54633.1| hypothetical protein SEEM8287_05157 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326627719|gb|EGE34062.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 200 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ V +RI+ R MS ++L G++ + + E + L I+ + Sbjct: 16 STINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGV 75 Query: 69 PISFFFDVSPTV 80 ++ F +V+ Sbjct: 76 SVADFVNVASEP 87 >gi|145596662|ref|YP_001160959.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145305999|gb|ABP56581.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 191 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R G++ +L E GI+ + + E G + L I+ P+ Sbjct: 11 EIGPRLKRARAQRGVTLAELAEATGISKSTLSRLEAGQRKPSLELLLPIAAAHRIPLDKL 70 Query: 74 FD 75 D Sbjct: 71 VD 72 >gi|16760223|ref|NP_455840.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142008|ref|NP_805350.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161903|ref|ZP_03347613.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426582|ref|ZP_03359332.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213586064|ref|ZP_03367890.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213645936|ref|ZP_03375989.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213864716|ref|ZP_03386835.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25513334|pir||AI0661 conserved hypothetical DNA-binding protein STY1400 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502518|emb|CAD01666.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137637|gb|AAO69199.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 200 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ V +RI+ R MS ++L G++ + + E + L I+ + Sbjct: 16 STINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGV 75 Query: 69 PISFFFDVSPTV 80 ++ F +V+ Sbjct: 76 SVADFVNVASEP 87 >gi|332142476|ref|YP_004428214.1| transcriptional regulator, Cro/CI family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552498|gb|AEA99216.1| transcriptional regulator, Cro/CI family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 175 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 41/123 (33%), Gaps = 8/123 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ R G+S +L GI + + E+G + +++ L+ P Sbjct: 9 LGRHLKKLRQDKGVSLSQLAAGAGIAKSNLSRLEQGNGNPTLDTIWRLAKQLDVPFGQLV 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 T + E I G+ + R++ + + ++ Sbjct: 69 QPLSTSVGENGVEVR----LIEQGQGVPNVDAYWMSVAPNTRRE----AEAHATETQETI 120 Query: 135 TIE 137 T+ Sbjct: 121 TVI 123 >gi|302387526|ref|YP_003823348.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198154|gb|ADL05725.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 195 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 8/94 (8%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N K VG IR R+ M+Q++L + + ++ + V K+E+G+ S + Sbjct: 1 MQNNK--------VGSIIRALRLEHSMTQKQLADKMNLSDKTVSKWERGMGLPDISLIPE 52 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFI 95 +S +LE I T + N F+ Sbjct: 53 LSRILEIDIMHLLSGDMTPNNFTGGNMKNTKYFV 86 >gi|258654776|ref|YP_003203932.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558001|gb|ACV80943.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 197 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 23/70 (32%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG R++ R G++ + GI+ + + E G R L +S P+ Sbjct: 17 RQVGPRLKGLRTQRGLTLTVVSASTGISKSTLSRLETGQRRPTLELLLALSHAYRVPLDD 76 Query: 73 FFDVSPTVCS 82 Sbjct: 77 LVAAPEEGDP 86 >gi|257086213|ref|ZP_05580574.1| predicted protein [Enterococcus faecalis D6] gi|256994243|gb|EEU81545.1| predicted protein [Enterococcus faecalis D6] Length = 250 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + ++ + ++ Sbjct: 84 WLLHGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMGRLSEEQL 125 >gi|222147111|ref|YP_002548068.1| transcriptional regulatory protein [Agrobacterium vitis S4] gi|221734101|gb|ACM35064.1| transcriptional regulatory protein [Agrobacterium vitis S4] Length = 194 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 41/96 (42%), Gaps = 3/96 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N P+ + + + R++ R G++ ++L + G++ + + E+ A+ L Sbjct: 1 MEN--TPDTLTLAIAARLKAIRTARGLTLDQLADLSGVSRAMISRIERAEASPTATLLAR 58 Query: 62 ISEVLESPISFFF-DVSPTVCSDISSEENNVMDFIS 96 + L +S FF + + +++ D + Sbjct: 59 LCSALGQSLSIFFAEPNHGSPLMRHADQPVWQDPET 94 >gi|219856265|ref|YP_002473387.1| hypothetical protein CKR_2922 [Clostridium kluyveri NBRC 12016] gi|219569989|dbj|BAH07973.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 108 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 3/102 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I++G R+ R + +SQ KL L + + K EKG + L I E + Sbjct: 4 IMIDIGNRVIKLRKLHKISQNKLAISLNVAAATINKIEKGTAKPSIDLLIKICEFFSITL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIS---TPDGLQLNRYFIQ 109 S FF+ I + + + + TP+ L+L FI+ Sbjct: 64 SEFFNNGNNSEPVILNPQLKELLDNAKDLTPEQLELLSKFIK 105 >gi|160935566|ref|ZP_02082941.1| hypothetical protein CLOBOL_00456 [Clostridium bolteae ATCC BAA-613] gi|158441310|gb|EDP19020.1| hypothetical protein CLOBOL_00456 [Clostridium bolteae ATCC BAA-613] Length = 115 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 34/104 (32%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G IR R GMSQ L E LGI + + E L + L Sbjct: 2 HDYVKTLGTVIRKAREEQGMSQASLAEKLGIDVRTIINIENFRGNPKFEVLYPLVTTLRI 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 P F D + + +S + L+L + + Sbjct: 62 PADRIFYPETESMGDSKQQLFWELHSLSEKEALELLPVIRCLAE 105 >gi|149914872|ref|ZP_01903401.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b] gi|149811060|gb|EDM70897.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b] Length = 207 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R G + E+ G+ + K E G L+ ++ LE + F Sbjct: 27 LGERVRDLRKSRGWTLEQAASQAGLARSTLSKIENGQMSPTYEALKKLAVGLEISVPQLF 86 Query: 75 D 75 Sbjct: 87 T 87 >gi|148381133|ref|YP_001255674.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153930841|ref|YP_001385508.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937138|ref|YP_001388914.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|168179166|ref|ZP_02613830.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|168183501|ref|ZP_02618165.1| DNA-binding protein [Clostridium botulinum Bf] gi|226950613|ref|YP_002805704.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|148290617|emb|CAL84746.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152926885|gb|ABS32385.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933052|gb|ABS38551.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|182669975|gb|EDT81951.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182673310|gb|EDT85271.1| DNA-binding protein [Clostridium botulinum Bf] gi|226843650|gb|ACO86316.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|322807499|emb|CBZ05074.1| transcriptional regulator, MerR family [Clostridium botulinum H04402 065] Length = 189 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 51/120 (42%), Gaps = 4/120 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I+ R ++ ++L E ++ + + E+G+ V L I++ L+ +++FF Sbjct: 5 IGKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + ++ N +D++ + + L+ + + K+ Sbjct: 65 QAPKKNKKIVLRSYEKEILQVENNRFIKYNLS----NDLEDKSFLPRLIEILPTDSKENI 120 >gi|163943351|ref|YP_001642581.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865548|gb|ABY46606.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 64 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR+ R +SQE L + ++ Q + E ++++ L + F Sbjct: 5 IRILRKEKKLSQEDLAKLCHVSRQTINAIENNKYDPTLELAFNLAKSLGVTVDQLF 60 >gi|163941382|ref|YP_001646266.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863579|gb|ABY44638.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 142 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 31/84 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++Q++L E +G++ + + YE L +++ + Sbjct: 1 MIGLRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLSKLADCFSVSADYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 + T + + D Sbjct: 61 LGRAVTDQPKEQLTQKDGKDIAKR 84 >gi|326574451|gb|EGE24393.1| peptidase S24-like protein [Moraxella catarrhalis 101P30B1] Length = 233 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 10/92 (10%), Positives = 29/92 (31%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R++ R G++Q+++ E + Q + +R ++ + + + Sbjct: 1 MELKNRLKHARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSKSTTRAVELAHLFGVDVHW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + STP Sbjct: 61 LISGEGEMTKNNDKLTPITEWDDSTPLDDDEV 92 >gi|284034421|ref|YP_003384352.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813714|gb|ADB35553.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 200 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 4/107 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R RR G+S +L GI + + E G + +S L P+S Sbjct: 14 LGVNLRARRDEQGISLSELARRSGIAKGTLSQLESGAGNPTIETVFSLSNALGVPVSALL 73 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 P + + + + + L R ++++ +I + Sbjct: 74 SEPPASDLVLVRSADTD---VLSGAAVDL-RMLRRLENPGSLFEIYD 116 >gi|257884151|ref|ZP_05663804.1| transcriptional regulator [Enterococcus faecium 1,231,501] gi|257819989|gb|EEV47137.1| transcriptional regulator [Enterococcus faecium 1,231,501] Length = 370 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 31/88 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K + R G++QE L E +G+T V K+E G + L ++ + + Sbjct: 8 KNVANLRKEKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVDELLGY 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN 104 P + + + + + Sbjct: 68 HPQLTKEQIRHFYQQWTTAFSEEPFEYV 95 >gi|228911402|ref|ZP_04075202.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] gi|228848237|gb|EEM93091.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] Length = 131 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 9/125 (7%) Query: 16 GKRIRLRRMILG-----MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 GK+++ R +Q + LG+ YE + + I+ + Sbjct: 8 GKKLKYLREERKKDNVEWTQTYVANQLGVARTTYTAYENDTKQPPMETILKIANLFSVST 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F S + +N + L L I+ + R+++ I+ E Sbjct: 68 DFLLGRVSDCKQTNSFDIDN----LMNDPELSLWFKDIKEASPEKREELKRFWEFIMQHE 123 Query: 131 KKYRT 135 K ++ Sbjct: 124 KTRQS 128 >gi|229173997|ref|ZP_04301534.1| hypothetical protein bcere0006_30920 [Bacillus cereus MM3] gi|228609506|gb|EEK66791.1| hypothetical protein bcere0006_30920 [Bacillus cereus MM3] Length = 374 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDK 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ--------LNRYFIQIDDVKVRQKIIEL-V 123 +P + + E + + + + + + + + ++ ++ + Sbjct: 64 LICYTPQMEQEAIRELYHRLAEAFSEEPFDEVMIECRGITKKYYSCFPLLLQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K I EE M Sbjct: 124 HMLTEDTDKRIEILEEAM 141 >gi|188581450|ref|YP_001924895.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179344948|gb|ACB80360.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 201 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P++ +G ++R+ R +S LG GI+ + K E G + + I+ L P Sbjct: 15 PLEKALGHQVRVLRRERDLSVADLGSAAGISPGMISKIENGAISPSLASINAIASALNVP 74 Query: 70 ISFFFDVSPTVCS 82 I+ F Sbjct: 75 ITALFAAFEETRD 87 >gi|88854610|ref|ZP_01129277.1| predicted transcription regulator, containing DNA-binding HTH domain [marine actinobacterium PHSC20C1] gi|88816418|gb|EAR26273.1| predicted transcription regulator, containing DNA-binding HTH domain [marine actinobacterium PHSC20C1] Length = 73 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 8/74 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV K+ N IR R G++Q +L +G+T Q + E+G Sbjct: 1 MVKPTKVTN--------NIRALREAEGLTQAELARRIGVTRQTLIAIEQGRYSPTLELAF 52 Query: 61 HISEVLESPISFFF 74 IS + + F Sbjct: 53 QISRNFGTGLDDVF 66 >gi|223932874|ref|ZP_03624870.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223898455|gb|EEF64820.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 168 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/126 (13%), Positives = 49/126 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +SQ++L + LGI + + ++E G + + + + Q +++ E + + Sbjct: 2 NRLKELRQEKKLSQKELADYLGINEKTISRWENGESTIKSDKAQALADYFEVEVGYLLGY 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + ++ +K + + EL + K +I Sbjct: 62 NEGHRRMYELFGKHPKKGAMGIIDFDELLEAHELGYIKDGKILDELQTDASVAIKFLESI 121 Query: 137 EEECMV 142 + + ++ Sbjct: 122 QSKLLL 127 >gi|90422889|ref|YP_531259.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104903|gb|ABD86940.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB18] Length = 480 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 37/100 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R LG+SQ ++ E LGI+ + E+ V A L ++E + + Sbjct: 9 LFVGPRFRRIRQQLGLSQTQMAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDLRD 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +E + F Q R ++ Sbjct: 69 LATADEDRFFAELNEIFSDPLFRQIDLPKQELRDLAELCP 108 >gi|30261384|ref|NP_843761.1| transcriptional regulator SinR [Bacillus anthracis str. Ames] gi|47526558|ref|YP_017907.1| transcriptional regulator SinR [Bacillus anthracis str. 'Ames Ancestor'] gi|49184213|ref|YP_027465.1| transcriptional regulator SinR [Bacillus anthracis str. Sterne] gi|49479785|ref|YP_035509.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144053|ref|YP_082775.1| transcriptional regulator [Bacillus cereus E33L] gi|65318649|ref|ZP_00391608.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165870458|ref|ZP_02215113.1| transcriptional regulator SinR [Bacillus anthracis str. A0488] gi|167634445|ref|ZP_02392766.1| transcriptional regulator SinR [Bacillus anthracis str. A0442] gi|167639233|ref|ZP_02397505.1| transcriptional regulator SinR [Bacillus anthracis str. A0193] gi|170686721|ref|ZP_02877941.1| transcriptional regulator SinR [Bacillus anthracis str. A0465] gi|170706389|ref|ZP_02896850.1| transcriptional regulator SinR [Bacillus anthracis str. A0389] gi|177651426|ref|ZP_02934215.1| transcriptional regulator SinR [Bacillus anthracis str. A0174] gi|190568774|ref|ZP_03021678.1| transcriptional regulator SinR [Bacillus anthracis Tsiankovskii-I] gi|196040706|ref|ZP_03108005.1| transcriptional regulator SinR [Bacillus cereus NVH0597-99] gi|196046437|ref|ZP_03113662.1| transcriptional regulator SinR [Bacillus cereus 03BB108] gi|218902488|ref|YP_002450322.1| transcriptional regulator SinR [Bacillus cereus AH820] gi|225863243|ref|YP_002748621.1| transcriptional regulator SinR [Bacillus cereus 03BB102] gi|227815879|ref|YP_002815888.1| transcriptional regulator SinR [Bacillus anthracis str. CDC 684] gi|228913951|ref|ZP_04077575.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228926412|ref|ZP_04089484.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932662|ref|ZP_04095536.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944980|ref|ZP_04107341.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229090334|ref|ZP_04221578.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-42] gi|229120921|ref|ZP_04250163.1| HTH-type transcriptional regulator sinR [Bacillus cereus 95/8201] gi|229183574|ref|ZP_04310798.1| HTH-type transcriptional regulator sinR [Bacillus cereus BGSC 6E1] gi|229600133|ref|YP_002865801.1| transcriptional regulator SinR [Bacillus anthracis str. A0248] gi|254682559|ref|ZP_05146420.1| transcriptional regulator [Bacillus anthracis str. CNEVA-9066] gi|254726220|ref|ZP_05188002.1| transcriptional regulator [Bacillus anthracis str. A1055] gi|254733977|ref|ZP_05191691.1| transcriptional regulator [Bacillus anthracis str. Western North America USA6153] gi|254740336|ref|ZP_05198027.1| transcriptional regulator [Bacillus anthracis str. Kruger B] gi|254753723|ref|ZP_05205758.1| transcriptional regulator [Bacillus anthracis str. Vollum] gi|254758819|ref|ZP_05210846.1| transcriptional regulator [Bacillus anthracis str. Australia 94] gi|30255238|gb|AAP25247.1| transcriptional regulator SinR [Bacillus anthracis str. Ames] gi|47501706|gb|AAT30382.1| transcriptional regulator SinR [Bacillus anthracis str. 'Ames Ancestor'] gi|49178140|gb|AAT53516.1| transcriptional regulator SinR [Bacillus anthracis str. Sterne] gi|49331341|gb|AAT61987.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51977522|gb|AAU19072.1| transcriptional regulator [Bacillus cereus E33L] gi|164713953|gb|EDR19475.1| transcriptional regulator SinR [Bacillus anthracis str. A0488] gi|167512672|gb|EDR88046.1| transcriptional regulator SinR [Bacillus anthracis str. A0193] gi|167530333|gb|EDR93059.1| transcriptional regulator SinR [Bacillus anthracis str. A0442] gi|170128923|gb|EDS97789.1| transcriptional regulator SinR [Bacillus anthracis str. A0389] gi|170669244|gb|EDT19987.1| transcriptional regulator SinR [Bacillus anthracis str. A0465] gi|172082704|gb|EDT67767.1| transcriptional regulator SinR [Bacillus anthracis str. A0174] gi|190560190|gb|EDV14171.1| transcriptional regulator SinR [Bacillus anthracis Tsiankovskii-I] gi|196022621|gb|EDX61303.1| transcriptional regulator SinR [Bacillus cereus 03BB108] gi|196028496|gb|EDX67104.1| transcriptional regulator SinR [Bacillus cereus NVH0597-99] gi|218539564|gb|ACK91962.1| transcriptional regulator SinR [Bacillus cereus AH820] gi|225790845|gb|ACO31062.1| transcriptional regulator SinR [Bacillus cereus 03BB102] gi|227003466|gb|ACP13209.1| transcriptional regulator SinR [Bacillus anthracis str. CDC 684] gi|228599984|gb|EEK57580.1| HTH-type transcriptional regulator sinR [Bacillus cereus BGSC 6E1] gi|228662581|gb|EEL18179.1| HTH-type transcriptional regulator sinR [Bacillus cereus 95/8201] gi|228693028|gb|EEL46745.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-42] gi|228814649|gb|EEM60909.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826980|gb|EEM72740.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833236|gb|EEM78801.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228845673|gb|EEM90700.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229264541|gb|ACQ46178.1| transcriptional regulator SinR [Bacillus anthracis str. A0248] Length = 107 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T +++ SE V D +++ + R F Sbjct: 61 LLHDETTKEANLDSEWTQLVKDAMNSGVSKEQFREF 96 >gi|325694303|gb|EGD36217.1| XRE family transcriptional regulator [Streptococcus sanguinis SK150] Length = 94 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+++L R G SQ ++ E LG T Q + +E + ++ L +++ + + Sbjct: 1 MLGKQLKLIREQKGYSQAQIAESLGTTRQTISNWENDKTILDSASLIRLADFYQISLDEL 60 >gi|322378098|ref|ZP_08052584.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] gi|321280935|gb|EFX57949.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] Length = 290 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ +R LG SQ++L E + Q+ + E+G GA L +SE + + +FF Sbjct: 8 RLKNKRKELGWSQKELAEGI-CQQTQISRMEQGKYMPGADLLYKLSEKMGLNMDYFFSGE 66 Query: 78 PTVC 81 + Sbjct: 67 ISKE 70 >gi|320094251|ref|ZP_08026052.1| cro/CI family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978817|gb|EFW10359.1| cro/CI family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 71 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 21/67 (31%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R +Q + G LG++ Q V E G I+ V I F Sbjct: 3 NNVKELRSEQRWTQAEFGASLGVSRQTVIAIENGKYDPSLGLAFKIASVFGKCIEDIFYP 62 Query: 77 SPTVCSD 83 P Sbjct: 63 DPDGQGG 69 >gi|300782969|ref|YP_003763260.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299792483|gb|ADJ42858.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 434 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 54/153 (35%), Gaps = 23/153 (15%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++ + +G RIR R G +Q +L E G + K E G L Sbjct: 1 MTYRGEMTSAPAEPLGARIRRLRTGRGWTQRELAE-PGYDRGFLAKVETGSRPPSEEMLT 59 Query: 61 HISEVLESPISFF-FDVSPTVCSDISSEENNVMDFI------------------STPDGL 101 ++++ L + F P V +++ + + + + L Sbjct: 60 YLAQRLGLTVDELRFGRPPGVAAELRAALDEGYRDLEQGRITAAQERFAAVGKQAAGYHL 119 Query: 102 QLNRYFIQIDDVKVRQKIIELV---RSIVSSEK 131 + + +VR ++ ++ R++ +++ Sbjct: 120 DDVECYARFCHAEVRWQLFDVAGAQRALEHADE 152 >gi|295697361|ref|YP_003590599.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295412963|gb|ADG07455.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 143 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 45/116 (38%), Gaps = 4/116 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF 74 G +++ R G + E+L G++ + E+G + ++ LE P++ F Sbjct: 6 GVKLKQLRTERGWTLEQLSARSGLSISHISSLERGTRMKPSFQVAVRLARALEVPLATFL 65 Query: 75 DVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + SD + +F+S D ++ + V + E+ R + Sbjct: 66 EDAGKEESDPLEHLPPEIREFVSREDATPYLYLAKRLQEAHV--SLQEMERWLRDE 119 >gi|291550352|emb|CBL26614.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Ruminococcus torques L2-14] Length = 119 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 3/115 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NK+ + G+ I+ R G+S+ +L + L I + + E L Sbjct: 1 MKQNKEKFDF--KAFGQAIKAARKAKGISRNQLADKLNIAPRYIASIENSGQHPSLQILY 58 Query: 61 HISEVLESPIS-FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + +L+ + FFF S + + ++D +S D L+ I++ Sbjct: 59 ELVTLLDVSVDQFFFPEREQEKSTRRRQLDTMLDGMSEKDLKILSATAKGIEEAN 113 >gi|291484297|dbj|BAI85372.1| hypothetical protein BSNT_02805 [Bacillus subtilis subsp. natto BEST195] Length = 128 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 9/114 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI+ R + +SQE L E L + + YE G + + +S++ F Sbjct: 7 KRMGMRIKQCRKAINISQEALAERLEMKRTNIANYEAGRVIPPGNVILELSKIFGVTTDF 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 S + + + Q+ R ++ + R ++ +V I Sbjct: 67 LLGSSDNPIGKLDPLDED---------LRQIQRAKTKLKNSADRDRMERMVEMI 111 >gi|229160333|ref|ZP_04288331.1| HTH-type transcriptional regulator sinR [Bacillus cereus R309803] gi|228623057|gb|EEK79885.1| HTH-type transcriptional regulator sinR [Bacillus cereus R309803] Length = 107 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T +++ SE V D +++ + R F Sbjct: 61 LLHDETTKEANLDSEWTQLVKDAMNSGVSKEQFREF 96 >gi|170756136|ref|YP_001782824.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169121348|gb|ACA45184.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 189 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 51/120 (42%), Gaps = 4/120 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I+ R ++ ++L E ++ + + E+G+ V L I++ L+ +++FF Sbjct: 5 IGKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + ++ N +D++ + + L+ + + K+ Sbjct: 65 QAPKKNKKIVLRSYEKEVLQVENNRFIKYNLS----NDLEDKSFLPRLIEILPTDSKENI 120 >gi|95930066|ref|ZP_01312805.1| putative phage repressor [Desulfuromonas acetoxidans DSM 684] gi|95133760|gb|EAT15420.1| putative phage repressor [Desulfuromonas acetoxidans DSM 684] Length = 230 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 4/104 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V +G+R+R R + + G++ + +YEKG++ A L I + L Sbjct: 20 VLKTIGERLRFLRGKQKL--PDFAQRFGVSKSTLGRYEKGISLPDAGFLAAICQQLHVCP 77 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + C + + S P + R + + K Sbjct: 78 QWLLMGGEKPCQPFVKDCPSGACDDSGPSC--IVRDYANLSSFK 119 >gi|83720019|ref|YP_443629.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83653844|gb|ABC37907.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 80 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P + +G+ IR R G+SQE+L GI + + E+G N L +I+E L Sbjct: 10 HPTLVALGRAIRRIRKDRGLSQEQLALTAGIDVSYLGRVERGDNNASVLALHYIAEALGM 69 Query: 69 PISFFFDVSP 78 ++ + Sbjct: 70 TMTALMTEAG 79 >gi|42782397|ref|NP_979644.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42738322|gb|AAS42252.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 374 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + ++ + + + ++ ++ + Sbjct: 64 LICYTPQMEPEDIRDLYHRLAEAFSEKPFDEVMVECREIIKKYYSCFPLLLQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K + EE M Sbjct: 124 HMLTEDTDKRIDMLEEAM 141 >gi|75760672|ref|ZP_00740699.1| SinR protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491853|gb|EAO55042.1| SinR protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 114 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 8 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 67 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T +++ SE V D +++ + R F Sbjct: 68 LLHDETTKATNLDSEWTQLVKDAMNSGVSKEQFREF 103 >gi|194016509|ref|ZP_03055123.1| transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194011982|gb|EDW21550.1| transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 153 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 31/78 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R I +QE++ E +G++ Q V K+E G + + ++E+ + + Sbjct: 13 NLKKMRKIHRFTQEEVAEKIGVSRQAVAKWESGETVPDINNCKALAELYGVALDDLVNNL 72 Query: 78 PTVCSDISSEENNVMDFI 95 + + + Sbjct: 73 DGTEVAGVKPKGKHIFGL 90 >gi|148997860|ref|ZP_01825424.1| transcriptional regulator [Streptococcus pneumoniae SP11-BS70] gi|168575004|ref|ZP_02720967.1| transcriptional regulator [Streptococcus pneumoniae MLV-016] gi|221232553|ref|YP_002511707.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225855248|ref|YP_002736760.1| transcriptional regulator [Streptococcus pneumoniae JJA] gi|307068427|ref|YP_003877393.1| putative Zn peptidase [Streptococcus pneumoniae AP200] gi|147756359|gb|EDK63401.1| transcriptional regulator [Streptococcus pneumoniae SP11-BS70] gi|183578938|gb|EDT99466.1| transcriptional regulator [Streptococcus pneumoniae MLV-016] gi|220675015|emb|CAR69593.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225724225|gb|ACO20078.1| transcriptional regulator [Streptococcus pneumoniae JJA] gi|306409964|gb|ADM85391.1| Predicted Zn peptidase [Streptococcus pneumoniae AP200] gi|332199828|gb|EGJ13903.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] Length = 383 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F + Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYF-E 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 SS ++T + + + Sbjct: 63 QEEESIRFDSSVIAFRNADLATRKTIDIQTMY 94 >gi|186472719|ref|YP_001860061.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184195051|gb|ACC73015.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 210 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+P ++G+R+R R+ ++ E G++ + K E G+ LQ I Sbjct: 6 TKLPESSTSDLGRRVRAARLAHDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVV 65 Query: 65 VLESPISFFFDVSP 78 L+ + F +P Sbjct: 66 GLKIDLGELFGSTP 79 >gi|126700545|ref|YP_001089442.1| putative phage DNA-binding protein [Clostridium difficile 630] Length = 387 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR-LQHISEVLESPISFFF 74 G+R++ R+ GM+ +L E + Q V YE ++ + ++ I+ VL P+ FF Sbjct: 12 GERLKKARIYRGMTVAELAERIDCQRQTVSMYENNKSKPNDNNVVKRIARVLGFPVKFFL 71 Query: 75 D 75 + Sbjct: 72 E 72 >gi|328956524|ref|YP_004373910.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] gi|328672848|gb|AEB28894.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] Length = 96 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R + M+ ++L E + ++ + E ++ L HI +VL IS Sbjct: 1 MEIGNRIQELRKLNNMTAKELSERINVSPPFISAIENNSTKLSLKTLAHICDVLGVTISE 60 Query: 73 FFDVSPTVCSD 83 FF+ + Sbjct: 61 FFNSEISPVEQ 71 >gi|315302804|ref|ZP_07873567.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria ivanovii FSL F6-596] gi|313628823|gb|EFR97193.1| toxin-antitoxin system, antitoxin component, Xre family [Listeria ivanovii FSL F6-596] Length = 140 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 55/129 (42%), Gaps = 9/129 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+R+R R ++Q+K+ + L I + + YE+ L+ ++E S+ Sbjct: 3 GERLRSLRENKNLTQQKVADDLNIKRENLSNYERNKREPDYEMLKKLAEYYGVSRSYILG 62 Query: 75 --------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +++ I + ++D +S D ++ ++D+ + I+ L S+ Sbjct: 63 ETDKKHYWELNDEDERSIQKDLQKMIDDLSNSDAFAYSKEDGEMDENTKKLLIMSLENSL 122 Query: 127 VSSEKKYRT 135 ++++ + Sbjct: 123 RIAKEESKK 131 >gi|296170806|ref|ZP_06852377.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894542|gb|EFG74280.1| DNA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 177 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E L E G+T + K E+ + + +++ L+ + F Sbjct: 5 LRAVRTQRGLTLEALAERTGLTKSYLSKIERRQSTPSIAVALKVAKALDVDVGQLFSDEE 64 Query: 79 TVCSDISSEENNVMD 93 D Sbjct: 65 AREKIAVDRAPAGAD 79 >gi|296110469|ref|YP_003620850.1| transcription regulator [Leuconostoc kimchii IMSNU 11154] gi|295832000|gb|ADG39881.1| transcription regulator [Leuconostoc kimchii IMSNU 11154] Length = 103 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 40/99 (40%), Gaps = 2/99 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R ++Q +L + L ++ + YE+G++ L I E+L + + Sbjct: 7 GEKLKAVRKSKNLTQLELSKRLEVSKGTISAYEQGLSYPSLETLVKICEILNTSSDYLLS 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +S + + + M+ + +I + Sbjct: 67 LSDNLTFKMGGLTSEQMNSVLQFIAT--IERANRILEEN 103 >gi|294615154|ref|ZP_06695038.1| transcription regulator [Enterococcus faecium E1636] gi|312905108|ref|ZP_07764229.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|291591974|gb|EFF23599.1| transcription regulator [Enterococcus faecium E1636] gi|310631498|gb|EFQ14781.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315579064|gb|EFU91255.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 71 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R G+SQ +L + + +T Q V ++ G +++ +SE+L P++ F Sbjct: 5 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPMNELFSD 64 >gi|288959830|ref|YP_003450170.1| transcriptional regulator [Azospirillum sp. B510] gi|288912138|dbj|BAI73626.1| transcriptional regulator [Azospirillum sp. B510] Length = 210 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G+ +R R G+S E+L G++ + + E G + + L I+ L+ Sbjct: 24 DAIPAILGRHLRRLRTRQGLSLERLARLSGVSRAMLGQIELGRSAPTITVLWKIARALDV 83 Query: 69 PISFF 73 ++ Sbjct: 84 TLASL 88 >gi|257890009|ref|ZP_05669662.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260560174|ref|ZP_05832351.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|257826369|gb|EEV52995.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260073741|gb|EEW62066.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] Length = 87 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R G+SQ +L + + +T Q V ++ G +++ +SE+L PI+ F Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELFSD 80 >gi|238911950|ref|ZP_04655787.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 200 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ V +RI+ R MS ++L G++ + + E + L I+ + Sbjct: 16 STINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGV 75 Query: 69 PISFFFDVSPTV 80 ++ F +V+ Sbjct: 76 SVADFVNVASEP 87 >gi|297562048|ref|YP_003681022.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846496|gb|ADH68516.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 164 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 57/148 (38%), Gaps = 13/148 (8%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISE 64 +P+ ++G R+R R G+S + E ++ V YE+G V +L +++ Sbjct: 1 MPSEYAKSLGARLRAIRTQQGLSLHGVEEKSHGRWKAVVVGSYERGDRAVTVQKLAELAD 60 Query: 65 VLESPISFFFDV----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK--VRQK 118 P+S +P + + M + L+RY I + + Sbjct: 61 FYGVPMSELLPGGAAPTPLGPTPKLVIDLERMQQLPQEKAGPLSRYVATIQSQRGDYNGR 120 Query: 119 IIEL----VRSIV-SSEKKYRTIEEECM 141 ++ + +RS+ +K + EE + Sbjct: 121 VLSIRQEDLRSLAVIYDKSPGDLTEELI 148 >gi|210620982|ref|ZP_03292367.1| hypothetical protein CLOHIR_00310 [Clostridium hiranonis DSM 13275] gi|210154966|gb|EEA85972.1| hypothetical protein CLOHIR_00310 [Clostridium hiranonis DSM 13275] Length = 204 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ N+G +I+ R M+ + + E ++ + + E+G+ V L+ I++VLE + Sbjct: 1 MNKNIGAKIKRLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLEKIADVLEVDL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 ++FF + F T + D + K+IE++ S+ Sbjct: 61 TYFFMKPKEHKKTVIRS-YEKEVFEITDGKYINYHLSSNLTDKIMFPKLIEILPGTAESD 119 >gi|153955923|ref|YP_001396688.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146348781|gb|EDK35317.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 104 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 43/100 (43%), Gaps = 3/100 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G R+ R + +SQ KL L + + K EKG + L I E +S Sbjct: 2 IDIGNRVIKLRKLHKISQNKLAISLNVAAATINKIEKGTAKPSIDLLIKICEFFSITLSE 61 Query: 73 FFDVSPTVCSDISSEENNVMDFIS---TPDGLQLNRYFIQ 109 FF+ I + + + + TP+ L+L FI+ Sbjct: 62 FFNNGNNSEPVILNPQLKELLDNAKDLTPEQLELLSKFIK 101 >gi|29337279|gb|AAD39136.2|AF123569_4 NmeSIC [Neisseria meningitidis] Length = 71 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + GKR++ R++ G SQE+L E +G+ + E+G + + +++ IS Sbjct: 6 VEFGKRVKHYRLLNGWSQEELAEKVGLHRTYIGSVERGERNISLLNISLLAKSFSINISE 65 Query: 73 FFDV 76 + Sbjct: 66 LVEG 69 >gi|56413411|ref|YP_150486.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362334|ref|YP_002141971.1| hypothetical protein SSPA1132 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127668|gb|AAV77174.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093811|emb|CAR59293.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 200 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ V +RI+ R MS ++L G++ + + E + L I+ + Sbjct: 16 STINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGV 75 Query: 69 PISFFFDVSPTV 80 ++ F +V+ Sbjct: 76 SVADFVNVASEP 87 >gi|15903671|ref|NP_359221.1| transcriptional regulator [Streptococcus pneumoniae R6] gi|116516126|ref|YP_817046.1| transcriptional regulator [Streptococcus pneumoniae D39] gi|15459299|gb|AAL00432.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076702|gb|ABJ54422.1| transcriptional regulator [Streptococcus pneumoniae D39] Length = 383 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F + Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYF-E 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 SS ++T + + + Sbjct: 63 QEEESIRFDSSVIAFRNADLATRKTIDIQTMY 94 >gi|89069298|ref|ZP_01156661.1| probable transcriptional regulator [Oceanicola granulosus HTCC2516] gi|89045174|gb|EAR51242.1| probable transcriptional regulator [Oceanicola granulosus HTCC2516] Length = 202 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 4/112 (3%) Query: 1 MVGNKKIPN-PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M + P D +G +R R GM+ + E G++ + + E+ + S L Sbjct: 1 MSDRQAWPEQSTDSKIGAALRRYRKSQGMTLRDVAEGAGLSTGFISQAERDIAVPSLSSL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + I++VL + P + + + S G + +I Sbjct: 61 RKIAQVLGVSLQDIL---PETVPAMEASRRSERRVYSAHPGSSAAMAYERIS 109 >gi|293378376|ref|ZP_06624545.1| DNA-binding protein [Enterococcus faecium PC4.1] gi|292643240|gb|EFF61381.1| DNA-binding protein [Enterococcus faecium PC4.1] Length = 370 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 31/88 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K + R G++QE L E +G+T V K+E G + L ++ + + Sbjct: 8 KNVANLRKKKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVDELLGY 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN 104 P + + + + + Sbjct: 68 HPQLTKEQIRHFYQQWTTAFSEEPFEYV 95 >gi|256957168|ref|ZP_05561339.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|256947664|gb|EEU64296.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|315034185|gb|EFT46117.1| helix-turn-helix protein [Enterococcus faecalis TX0027] Length = 191 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 31/78 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R SQE+L + L ++ Q + +E + L +S + + + Sbjct: 1 MNLNKQIKNYREEFNFSQEELAKKLFVSRQTISNWENERSYPDIHNLLLLSVLFDVSLDE 60 Query: 73 FFDVSPTVCSDISSEENN 90 + + N Sbjct: 61 LVKGDVEKMKEKIANVNM 78 >gi|187927014|ref|YP_001893359.1| transcriptional regulator, XRE family [Ralstonia pickettii 12J] gi|241665343|ref|YP_002983702.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|187728768|gb|ACD29932.1| transcriptional regulator, XRE family [Ralstonia pickettii 12J] gi|240867370|gb|ACS65030.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 198 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 29/72 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +++ R +S ++L G++ + + E+ + + L ++ L ++ F Sbjct: 16 AVGAKLQALRQARKLSLDELSRHAGVSKSMLSQVERNLANPTVAVLWRLATALGVSLADF 75 Query: 74 FDVSPTVCSDIS 85 + + Sbjct: 76 LSPESAADAAPA 87 >gi|126699176|ref|YP_001088073.1| putative transcriptional regulator [Clostridium difficile 630] gi|115250613|emb|CAJ68437.1| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 404 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 37/91 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I+ R ++QE+L + +G++ V K+E G + L +++ I Sbjct: 3 IKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDK 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + + + + ++ + L Sbjct: 63 LLNYKIDLSEEEVMKIYKELESGFAKIEIDL 93 >gi|150398499|ref|YP_001328966.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030014|gb|ABR62131.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 209 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 29/82 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + +R R G++ +L + + K E G + ++E L + ++ F Sbjct: 20 IAETLRQLRQENGLTLNELARRCALAPSTLSKIENGQMSPTYDTILSLAEGLGADVAELF 79 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 T N D ++ Sbjct: 80 ARRQTTTVSGRRTINRAGDGVA 101 >gi|88604161|ref|YP_504339.1| XRE family transcriptional regulator [Methanospirillum hungatei JF-1] gi|88189623|gb|ABD42620.1| transcriptional regulator, XRE family [Methanospirillum hungatei JF-1] Length = 70 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R+ G++Q L G+ + + EKG HI+ +L + I F Sbjct: 4 RIKEFRVRQGITQADLARKAGVRRETIVFLEKGKYNPSLRLAHHIACILNTSIEELFFFD 63 Query: 78 PTVCSDI 84 D Sbjct: 64 DETGPDE 70 >gi|29171585|ref|NP_808631.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28856078|gb|AAO59134.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato str. DC3000] gi|320326981|gb|EFW82998.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882666|gb|EGH16815.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330945149|gb|EGH46863.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 117 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 4/98 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +I+ R + GMSQ L E +G V YE+G++ G +L IS + Sbjct: 7 FVGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPGEL 66 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 DV T + + + +P+ L+ F Sbjct: 67 LPGGQDVLRTRLISLRQAIADKAIEVDSPESLEEILAF 104 >gi|332297685|ref|YP_004439607.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332180788|gb|AEE16476.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 107 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + +G+ IR R LG +QE+L E I+ + + E G +++IS+ L Sbjct: 2 NEIVAVLGQNIRKFRKNLGWTQEQLAEKAQISVPFMTQIELGRKSASLEVIENISKSLGV 61 Query: 69 PISFFFDVSPTV 80 P F Sbjct: 62 PYDALFKKDAAD 73 >gi|293374084|ref|ZP_06620420.1| cupin domain protein [Turicibacter sanguinis PC909] gi|325845732|ref|ZP_08169012.1| cupin domain protein [Turicibacter sp. HGF1] gi|292647291|gb|EFF65265.1| cupin domain protein [Turicibacter sanguinis PC909] gi|325488246|gb|EGC90675.1| cupin domain protein [Turicibacter sp. HGF1] Length = 180 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 36/77 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR RM L ++QE+L + +T + + E+ + + L I E L + + Sbjct: 1 MIIGEKIRRLRMELQLTQEELADRTELTKGYISQVERDLASPSIATLVDILEALGTTLGE 60 Query: 73 FFDVSPTVCSDISSEEN 89 FF + E+ Sbjct: 61 FFAEEKNDQKVVFQRED 77 >gi|288905901|ref|YP_003431123.1| transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] gi|288732627|emb|CBI14199.1| putative transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] Length = 117 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 36/88 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R ++Q++L + L ++ Q + +E+G + + +I++ + Sbjct: 4 KRLKKLRKEANLTQQELAKNLNVSQQIIGLWERGERKPKIEAINNIAKYFNVSTEYLQGK 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN 104 + + E F +T L L Sbjct: 64 TDNKEIEEDELELANTLFRTTVKELNLT 91 >gi|255103257|ref|ZP_05332234.1| hypothetical protein CdifQCD-6_20765 [Clostridium difficile QCD-63q42] Length = 112 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 45/117 (38%), Gaps = 7/117 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R LG++Q ++G L ++ + E G + + I + ++ Sbjct: 3 KRLKTLRKELGLNQTQMGNKLFLSQDHISSLETGRRDLTDRIINDICKEFNVNENWLRTG 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + D + + + D ++ R ++ + ++++ + + E K Sbjct: 63 EGDIFQDPTLDMDFDDDI------KEMLRMISKL-SPEAQKRLYNVAEVFLEEENKK 112 >gi|218282728|ref|ZP_03488925.1| hypothetical protein EUBIFOR_01511 [Eubacterium biforme DSM 3989] gi|218216373|gb|EEC89911.1| hypothetical protein EUBIFOR_01511 [Eubacterium biforme DSM 3989] Length = 177 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 5/127 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R G++ E+L +T + + E+ + S L++I E L + ++ Sbjct: 1 MKIGKKLKELRTQNGLTLEELANRSELTKGFLSQLERDLTSPNISALENILEALGTNLAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF S + DF + Y + + I+ ++ S++ Sbjct: 61 FFQSSKEEQI-----VFHTQDFFVNEQEDFVTEYIVPNAQKNQMEPILLTLKPGAKSQEV 115 Query: 133 YRTIEEE 139 EE Sbjct: 116 KAHEGEE 122 >gi|188493485|ref|ZP_03000755.1| helix-turn-helix domain protein [Escherichia coli 53638] gi|188488684|gb|EDU63787.1| helix-turn-helix domain protein [Escherichia coli 53638] Length = 167 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + R+R +R G++ +L L + + + ++E G S L ++ +L Sbjct: 65 NSAINNRLRTQREACGLTTAELARLLDLDEEVIIQWESGEYEPTISMLIPLANILGCDPM 124 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 + + T SEE + Sbjct: 125 WLLTGAVTPPVQPKSEEQQHHN 146 >gi|149920158|ref|ZP_01908630.1| transcriptional regulator [Plesiocystis pacifica SIR-1] gi|149818924|gb|EDM78363.1| transcriptional regulator [Plesiocystis pacifica SIR-1] Length = 113 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R RR LG+SQEKL E ++ + + + E+G ++ ++ L +S Sbjct: 16 ELGDRVRERRRELGLSQEKLAEKAQVSKETIGRLEQGGGTPSLFTVRKVANALGETVSAL 75 Query: 74 FDVSPTVCSDIS 85 Sbjct: 76 LAGQAGDEVSAL 87 >gi|329769730|ref|ZP_08261131.1| hypothetical protein HMPREF0433_00895 [Gemella sanguinis M325] gi|328838092|gb|EGF87710.1| hypothetical protein HMPREF0433_00895 [Gemella sanguinis M325] Length = 218 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ + E LG+T +EKG L+ +++ S+F Sbjct: 6 RLQALRKKHNISQTAIAEHLGVTRSAYNGWEKGKFIPNKKNLEELADYFNVETSYF 61 >gi|327394419|dbj|BAK11841.1| HTH-type transcriptional regulator PuuR [Pantoea ananatis AJ13355] Length = 153 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 7/98 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P G+R+ R +G+SQ ++ E G+T + E+ S LQ Sbjct: 1 MNDANQAP-------GRRLSQIRQAMGLSQRRVAELAGLTHSAISTIEQDKVSPAVSTLQ 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 + +V +S FF + + + I + Sbjct: 54 KLLKVYGLSLSEFFSEPHSQDAPNVVVRPEDLLEIGSR 91 >gi|323487380|ref|ZP_08092678.1| xre family Toxin-antitoxin system [Clostridium symbiosum WAL-14163] gi|323693858|ref|ZP_08108049.1| hypothetical protein HMPREF9475_02912 [Clostridium symbiosum WAL-14673] gi|323399286|gb|EGA91686.1| xre family Toxin-antitoxin system [Clostridium symbiosum WAL-14163] gi|323502110|gb|EGB17981.1| hypothetical protein HMPREF9475_02912 [Clostridium symbiosum WAL-14673] Length = 115 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 38/92 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+++ R G +Q+ L E LG++ + E G ++ I ++L ++ Sbjct: 1 MTIGERLKIARKARGYTQDSLAEALGMSRGVITNIEYGRAEPQTLVIKAICDILHISQTW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + D E++ + L Sbjct: 61 LMTGNGNMDIDFDLEKSARLLSYIYNAAKDLT 92 >gi|310815538|ref|YP_003963502.1| transcriptional regulator, XRE family with cupin sensor [Ketogulonicigenium vulgare Y25] gi|308754273|gb|ADO42202.1| transcriptional regulator, XRE family with cupin sensor [Ketogulonicigenium vulgare Y25] Length = 214 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G RIR R G++ ++L + G++ + + E+ L +++VL+ I F Sbjct: 30 GSRIRELRKKNGLTLQQLSDRAGLSVGFLSQLERDKAVPSLGSLARLAQVLQVDIDHF 87 >gi|296120081|ref|ZP_06838635.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306] gi|295967235|gb|EFG80506.1| DNA-binding protein [Corynebacterium ammoniagenes DSM 20306] Length = 440 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 12/129 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R G++Q ++ + L ++ + + E + + L +SE ++F Sbjct: 7 GARIHALRKTYGLTQVEMAKQLDLSTSYLNQLENDQRPLTVTVLIQLSEAFNVDSTYF-- 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S + +E ++ L F + + +LV +I S+ T Sbjct: 65 -SADRDLRVVNELRSLFPTTEEDTLHDLASRFP--------EMMPKLV-AIAQSDPVEAT 114 Query: 136 IEEECMVEQ 144 MV++ Sbjct: 115 PSPLEMVQK 123 >gi|311742888|ref|ZP_07716696.1| DNA-binding protein [Aeromicrobium marinum DSM 15272] gi|311313568|gb|EFQ83477.1| DNA-binding protein [Aeromicrobium marinum DSM 15272] Length = 259 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 1/95 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G RIR R G+S +L L ++ V + E+G+ L + LE + Sbjct: 29 IAIGHRIRSAREAAGISVRELSRRLEVSPSHVSQVERGLASFSVRALYRVVSELEISMDS 88 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 F +V P +S+ + GL Sbjct: 89 LFGEVLPVPEVPAASDSPGPGPGAGSDGGLDHLVA 123 >gi|253577297|ref|ZP_04854615.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843301|gb|EES71331.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 117 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 42/97 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKR+R R + ++QEKL E + ++ + + E+G + L ++ L + + Sbjct: 5 ALGKRLRQERHKMHLTQEKLAERIEVSDAYIGQIERGERSLSLETLVKLANQLGVTVDYL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 S + D ++ + + QL +++ Sbjct: 65 LHDSIEISDDHFLDQIQQIVMNRSTKEKQLALDILKL 101 >gi|225859579|ref|YP_002741089.1| transcriptional regulator [Streptococcus pneumoniae 70585] gi|225721280|gb|ACO17134.1| transcriptional regulator [Streptococcus pneumoniae 70585] Length = 383 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F + Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYF-E 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 SS ++T + + + Sbjct: 63 QEEESIRFDSSVIAFRNADLATRKAIDIQTMY 94 >gi|225569728|ref|ZP_03778753.1| hypothetical protein CLOHYLEM_05822 [Clostridium hylemonae DSM 15053] gi|225161198|gb|EEG73817.1| hypothetical protein CLOHYLEM_05822 [Clostridium hylemonae DSM 15053] Length = 114 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 34/61 (55%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K ++ R +SQ++L + L T Q + KYE G++ L+++++ ++ I + Sbjct: 1 MNIVKNLKKLRTERNLSQQQLADMLHTTQQNIYKYENGISEPNLETLKNMADHFQTSIDY 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|153940942|ref|YP_001392536.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152936838|gb|ABS42336.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295320522|gb|ADG00900.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 189 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 51/120 (42%), Gaps = 4/120 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I+ R ++ ++L E ++ + + E+G+ V L I++ L+ +++FF Sbjct: 5 IGKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + ++ N +D++ + + L+ + + K+ Sbjct: 65 QAPKKNKKIVLRSYEKEILQVENNRFIKYNLS----NDLEDKSFLPRLIEILPTDSKENI 120 >gi|15901638|ref|NP_346242.1| transcriptional regulator [Streptococcus pneumoniae TIGR4] gi|111657394|ref|ZP_01408149.1| hypothetical protein SpneT_02001403 [Streptococcus pneumoniae TIGR4] gi|148993267|ref|ZP_01822807.1| transcriptional regulator [Streptococcus pneumoniae SP9-BS68] gi|149006536|ref|ZP_01830235.1| transcriptional regulator [Streptococcus pneumoniae SP18-BS74] gi|168488478|ref|ZP_02712677.1| transcriptional regulator [Streptococcus pneumoniae SP195] gi|168491876|ref|ZP_02716019.1| transcriptional regulator [Streptococcus pneumoniae CDC0288-04] gi|225857406|ref|YP_002738917.1| transcriptional regulator [Streptococcus pneumoniae P1031] gi|14973308|gb|AAK75882.1| transcriptional regulator [Streptococcus pneumoniae TIGR4] gi|147761834|gb|EDK68797.1| transcriptional regulator [Streptococcus pneumoniae SP18-BS74] gi|147928034|gb|EDK79053.1| transcriptional regulator [Streptococcus pneumoniae SP9-BS68] gi|183572846|gb|EDT93374.1| transcriptional regulator [Streptococcus pneumoniae SP195] gi|183573895|gb|EDT94423.1| transcriptional regulator [Streptococcus pneumoniae CDC0288-04] gi|225725090|gb|ACO20942.1| transcriptional regulator [Streptococcus pneumoniae P1031] gi|332072635|gb|EGI83118.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] gi|332072966|gb|EGI83447.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] Length = 383 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F + Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYF-E 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 SS ++T + + + Sbjct: 63 QEEESIRFDSSVIAFRNADLATRKTIDIQTMY 94 >gi|282882172|ref|ZP_06290811.1| phage related transcriptional regulator [Peptoniphilus lacrimalis 315-B] gi|281297937|gb|EFA90394.1| phage related transcriptional regulator [Peptoniphilus lacrimalis 315-B] Length = 235 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 38/70 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R++ ++ ++L E LG++ +QKYE G +Q IS++L PI+ Sbjct: 1 MTLGEKIRKYRILNNLTMKELSEKLGMSISAIQKYENGTVIPKTDIIQKISKILNVPINK 60 Query: 73 FFDVSPTVCS 82 + + Sbjct: 61 LLEETSAKND 70 >gi|259503565|ref|ZP_05746467.1| xre family toxin-antitoxin system [Lactobacillus antri DSM 16041] gi|259168478|gb|EEW52973.1| xre family toxin-antitoxin system [Lactobacillus antri DSM 16041] Length = 108 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 3/96 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G S+ + + +G+ Q +E G L I+++ + + Sbjct: 7 RLTDLRENKGWSKTYVAKAVGLKSMQTYANWEYGRTEPDFKMLTKIAKLFDVSTDYLLSG 66 Query: 77 SPT--VCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + +++ V + + +Y +I Sbjct: 67 NKDKQPKEADLADQETVFTYEGEKISSEDLKYIKRI 102 >gi|256849871|ref|ZP_05555302.1| predicted protein [Lactobacillus crispatus MV-1A-US] gi|256713360|gb|EEU28350.1| predicted protein [Lactobacillus crispatus MV-1A-US] Length = 71 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR+ R ++Q +L E +G + + +YE G++ RL I+ L + + Sbjct: 6 LGKRLMRARKNRQLTQVQLAERIGASTTTISRYENGLSFPSKRRLSEIAHFLGVKVDWLL 65 Query: 75 DVSPTV 80 Sbjct: 66 TGFKED 71 >gi|290579576|ref|YP_003483968.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|254996475|dbj|BAH87076.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 304 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 16 GKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GK+I+ R+ G+++E + + ++ +Q+ + E G + ++ +I+ L + + Sbjct: 6 GKKIKSLRLEKGLTKEAVCLDESQLSTRQLTRIESGQSTPTLNKAVYIAGRLGVTLGYLT 65 Query: 75 DVSPTVCSDISSEENN 90 D E Sbjct: 66 DGENVELPSRYKELKY 81 >gi|229825438|ref|ZP_04451507.1| hypothetical protein GCWU000182_00797 [Abiotrophia defectiva ATCC 49176] gi|229790001|gb|EEP26115.1| hypothetical protein GCWU000182_00797 [Abiotrophia defectiva ATCC 49176] Length = 116 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 41/118 (34%), Gaps = 9/118 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G++Q +L LG+ + YE N +L +S+ + + +S Sbjct: 6 RLKQLRQKKGLTQGELANILGLKPTAISNYESNRNEPSFDKLIALSKEFDVTCDYLLGIS 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + I + + + Q+ + + + ++ ++ + Sbjct: 66 DSALPIGGE--------ILDKEIVDFFLVYQQLM-PESAASVRDYAEYLLDKQENKKN 114 >gi|209543154|ref|YP_002275383.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209530831|gb|ACI50768.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 83 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 31/73 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R G+SQE L E +G+ + E G V L H S+ L + D Sbjct: 8 GANVRRLRRAAGLSQEALAERMGVDRAYISWIETGRQNVTLLSLWHASQALGVRPAALLD 67 Query: 76 VSPTVCSDISSEE 88 S V ++ + + Sbjct: 68 ESHAVATEAAPAD 80 >gi|114767315|ref|ZP_01446138.1| DNA-binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114540568|gb|EAU43642.1| DNA-binding protein, putative [Roseovarius sp. HTCC2601] Length = 212 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+++R R M+ +L + G++ + K E GV + LQ ++ L P+ Sbjct: 24 LEVAIGRQVRDLRKRQRMTGSELAQQTGLSVGMLSKIENGVISPSLNTLQALANALRVPL 83 Query: 71 SFFFDVSPTVCSDI 84 F + Sbjct: 84 VQLFSGFEEPRGAM 97 >gi|90579989|ref|ZP_01235797.1| putative transcriptional regulator [Vibrio angustum S14] gi|90438874|gb|EAS64057.1| putative transcriptional regulator [Vibrio angustum S14] Length = 82 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 8/76 (10%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHI 62 + P+ + R++ R G +Q++LG LG+ + +YE+G + +Q I Sbjct: 1 METPIPV----RLKAARKAAGYTQQQLGIALGMDPNTASARMNQYERGKHTPDYQTMQRI 56 Query: 63 SEVLESPISFFFDVSP 78 +VL P ++F+ Sbjct: 57 GKVLGVPTAYFYCEDD 72 >gi|148266398|ref|YP_001233104.1| helix-turn-helix domain-containing protein [Geobacter uraniireducens Rf4] gi|146399898|gb|ABQ28531.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4] Length = 355 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 1/102 (0%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R + GM QE LGE G+T Q + +E+G + ++ + ++L PI + Sbjct: 3 LRELRELAGMKQEALGELAGVTRQTIAAWERGERQPSMQQVVKLCQILHVPIDVML-GTG 61 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 V + + + +S L R +++ ++ Sbjct: 62 NVTEPVLLFRADATETLSPALKSLLTRKAYDYAEIEKLAGVL 103 >gi|77408023|ref|ZP_00784772.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] gi|77413855|ref|ZP_00790033.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77160095|gb|EAO71228.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77173385|gb|EAO76505.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae COH1] Length = 104 Score = 46.4 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R+ +SQ+++ E + I+ Q K+E G N + L+ ++ I Sbjct: 4 KKLKELRINNKLSQKQIAEQMNISQQAYAKWESGKNSPSLATLEKVANFFNLSIEELLSD 63 Query: 77 SPTVCSDISSEE 88 ++ E Sbjct: 64 GTVSLDNLLKAE 75 >gi|319652450|ref|ZP_08006566.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317395912|gb|EFV76634.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 212 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 1/93 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK++ R G S +L IT + + E+G+ L+ +++ L+ P Sbjct: 34 NIDIGKKVEKFRKEKGYSSRELARIAEITPSMLSQIERGIANPSIQTLKVLAKALDVPTF 93 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + T D+ N + +L Sbjct: 94 SFL-LEETNTEDLVVRFNERKHMVVENISYELL 125 >gi|317470678|ref|ZP_07930063.1| hypothetical protein HMPREF1011_00410 [Anaerostipes sp. 3_2_56FAA] gi|316901813|gb|EFV23742.1| hypothetical protein HMPREF1011_00410 [Anaerostipes sp. 3_2_56FAA] Length = 191 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 1/89 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+I+ R+ +SQ++L E + +T Q + +E G N L +S + + Sbjct: 5 KQIKKYRLDSKLSQDELAEKVYVTRQTISNWENGKNYPDVKSLLLLSTLFHISLDTLVKG 64 Query: 77 S-PTVCSDISSEENNVMDFISTPDGLQLN 104 + I +E+ + S GL L Sbjct: 65 DLEEMREQIKAEDIKKWNRDSLIFGLLLV 93 >gi|300856826|ref|YP_003781810.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436941|gb|ADK16708.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 314 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 33/91 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I+ R + ++Q+KL + +G++ + E L ++++ + + + Sbjct: 1 MLGDKIKDLRKLKKITQQKLAKSIGLSQSSIGMIESNKQGASNETLVKLAKLFDVTVDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 +E I+ + Sbjct: 61 LGTDEIENIGYIIKEEREYQGITQKELSDAV 91 Score = 39.4 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R G++Q++L + +GI ++ KYE + + I+ + F Sbjct: 69 IGYIIKEEREYQGITQKELSDAVGINENELAKYENNEAPISQFLAKKIANFFDMSFPAFL 128 Query: 75 D 75 + Sbjct: 129 N 129 >gi|296128685|ref|YP_003635935.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296020500|gb|ADG73736.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 446 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 6/118 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V +RIR R G+SQ L + V E+GV G L+ ++ L ++ Sbjct: 19 VSERIRDARERSGLSQADLARAAMMHPSYVSHLERGVRGPGDGALERLARALGVTTTYLE 78 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL-----QLNR-YFIQIDDVKVRQKIIELVRSI 126 + S + +L +D + + ++ ++ Sbjct: 79 QGERSPEYQASEAAVVRARQLVRAGRAAEAVTELAAVRLGSLDVDQCARVLLAYAEAL 136 >gi|291518587|emb|CBK73808.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 251 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R G++Q++L + +G++ + V ++E G S + + + L+ I+ Sbjct: 8 GSFISEMRKEKGLTQKQLADLVGVSDKAVSRWETGKGLPDTSIMPELCKALDININELLS 67 Query: 76 VS 77 Sbjct: 68 GE 69 >gi|259506603|ref|ZP_05749505.1| transcriptional regulator [Corynebacterium efficiens YS-314] gi|259165801|gb|EEW50355.1| transcriptional regulator [Corynebacterium efficiens YS-314] Length = 138 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 6/110 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVLES 68 +G R+R R I G SQE+L E + ++ + E+ N S + +S L+ Sbjct: 23 LGARVREIRKIRGYSQEELAEIVNMSRNAISNLERNENNNGKPGDPRLSTVYKLSWALDV 82 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 P + I +E+ +D ++ R+ Sbjct: 83 PPAALLPAVGEKPQGICVDESLPVDVRWPAPRDEVLFDVPLTPPEHPRRA 132 >gi|254975202|ref|ZP_05271674.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092592|ref|ZP_05322070.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255314329|ref|ZP_05355912.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517008|ref|ZP_05384684.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650110|ref|ZP_05397012.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683237|ref|YP_003214522.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686833|ref|YP_003217966.1| putative transcriptional regulator [Clostridium difficile R20291] gi|260209400|emb|CBA62866.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212849|emb|CBE04052.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 404 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 37/91 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I+ R ++QE+L + +G++ V K+E G + L +++ I Sbjct: 3 IKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDK 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + + + + ++ + L Sbjct: 63 LLNYKIDLSEEKVMKIYKELESGFARIEIDL 93 >gi|170754757|ref|YP_001781905.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119969|gb|ACA43805.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 78 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +++ R LG++QE+LGE +G++ Q + E G I++V I F F Sbjct: 3 NKLKQFRENLGLTQEQLGELVGVSRQAINAIETGKFEPSIWLAYDIAKVFHDTIEEVFLF 62 Query: 75 DVSPTVCSDISS 86 + S S Sbjct: 63 EESERKSRSEKS 74 >gi|306520117|ref|ZP_07406464.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] Length = 405 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 37/91 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I+ R ++QE+L + +G++ V K+E G + L +++ I Sbjct: 3 IKIGKVIQRLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDK 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + + + + ++ + L Sbjct: 63 LLNYKIDLSEEKVMKIYKELESGFARIEIDL 93 >gi|26249039|ref|NP_755079.1| putative repressor protein of prophage [Escherichia coli CFT073] gi|331651509|ref|ZP_08352529.1| repressor protein C2 [Escherichia coli M718] gi|26109446|gb|AAN81649.1|AE016765_51 Putative repressor protein of prophage [Escherichia coli CFT073] gi|331050782|gb|EGI22839.1| repressor protein C2 [Escherichia coli M718] Length = 208 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R + SQ++LG+ G++ V +EK +N G L +++ + I + Sbjct: 4 VGQRIKALRRVTRTSQKELGKFCGVSDVAVGYWEKDINTPGGEALSKLAKFFNTSIDYIL 63 Query: 75 DVSP 78 + Sbjct: 64 YGAE 67 >gi|54293993|ref|YP_126408.1| hypothetical protein lpl1052 [Legionella pneumophila str. Lens] gi|53753825|emb|CAH15288.1| hypothetical protein lpl1052 [Legionella pneumophila str. Lens] gi|307609819|emb|CBW99336.1| hypothetical protein LPW_11141 [Legionella pneumophila 130b] Length = 84 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK+IR R G SQE + + E+G + L I + L+ + Sbjct: 8 IVLGKQIRKIRKEKGFSQEGFANFIEMNRGYYGTVERGEANITILNLLKILKGLDVTPNE 67 Query: 73 FF 74 F Sbjct: 68 LF 69 >gi|11499382|ref|NP_070621.1| repressor protein [Archaeoglobus fulgidus DSM 4304] gi|3219980|sp|O28481|Y1793_ARCFU RecName: Full=Uncharacterized HTH-type transcriptional regulator AF_1793 gi|2648767|gb|AAB89470.1| repressor protein [Archaeoglobus fulgidus DSM 4304] Length = 70 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R GM+QE+L + +G+ + + EKG I+ V + I F Sbjct: 4 RIREFRAKYGMTQEELAKKVGVRRETIVFLEKGKYNPSLRLAYKIARVFNARIEDLFIFD 63 Query: 78 PTV 80 Sbjct: 64 DEE 66 >gi|15613851|ref|NP_242154.1| transcriptional repressor of PBSX genes [Bacillus halodurans C-125] gi|10173904|dbj|BAB05007.1| transcriptional repressor of PBSX genes [Bacillus halodurans C-125] Length = 112 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 44/101 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+R R+ +SQE+L + LG+ + +YE + L +++ + + Sbjct: 4 GKRLRSLRINKKLSQEELAKTLGLNRSTLARYELENTQPDYETLTKMADFFQVTTDYILG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + +S ++ + ++ + L + + ++K R Sbjct: 64 RVDDETTQLSISFSHGGEELTEDEKAHLEQELKKYRELKER 104 >gi|251789524|ref|YP_003004245.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538145|gb|ACT06766.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 128 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 33/67 (49%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P +G RI R L ++Q++L E LGI Q + YE G +V AS L ++ +L Sbjct: 18 PFFKELGARIAQARKELQLTQQQLAEQLGIAQQTMAHYEGGRLKVSASLLPQLATILNLS 77 Query: 70 ISFFFDV 76 + + Sbjct: 78 LDELLGL 84 >gi|239631261|ref|ZP_04674292.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525726|gb|EEQ64727.1| predicted protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 222 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R M+QE L L +T Q + +E+ + + L +S+V ++ + Sbjct: 21 MKFGEQLAALRKHRTMTQEDLAGQLMVTRQTISSWEREKSFPDLTMLLQLSKVFDTSLDQ 80 Query: 73 FF 74 Sbjct: 81 LL 82 >gi|229018544|ref|ZP_04175403.1| hypothetical protein bcere0030_30680 [Bacillus cereus AH1273] gi|229024800|ref|ZP_04181236.1| hypothetical protein bcere0029_31090 [Bacillus cereus AH1272] gi|228736511|gb|EEL87070.1| hypothetical protein bcere0029_31090 [Bacillus cereus AH1272] gi|228742756|gb|EEL92897.1| hypothetical protein bcere0030_30680 [Bacillus cereus AH1273] Length = 374 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 57/138 (41%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP--------DGLQLNRYFIQIDDVKVRQKIIELVR 124 +P + + + + + + ++ + + + ++ ++ + Sbjct: 64 LISYTPQMEQEDIKNLYHRLAEAFSEEPFDEVMMECREIIKKYYSCFPLLLQMGLLFINH 123 Query: 125 SIVSSEKKYRT-IEEECM 141 +++ + RT I EE M Sbjct: 124 HMLTVDTDKRTKILEEAM 141 >gi|257066078|ref|YP_003152334.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256797958|gb|ACV28613.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 304 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 46/104 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +R R G+S++++ E + ++ + +++ EKG N S L I L I Sbjct: 8 KFIGPDLRKIREAKGISRKEISEKVYVSEETIRRIEKGENDPRLSTLIPICNCLGIEIED 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + S +++ S + ++ + ++D+K++ Sbjct: 68 IINSSGFEYNNLLSFRREINYHLNNSSIEKARLLISNLNDIKIK 111 >gi|225861611|ref|YP_002743120.1| transcriptional regulator [Streptococcus pneumoniae Taiwan19F-14] gi|298230403|ref|ZP_06964084.1| transcriptional regulator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255524|ref|ZP_06979110.1| transcriptional regulator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503538|ref|YP_003725478.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|225727248|gb|ACO23099.1| transcriptional regulator [Streptococcus pneumoniae Taiwan19F-14] gi|298239133|gb|ADI70264.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|327389977|gb|EGE88322.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] Length = 383 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F + Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYF-E 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 SS ++T + + + Sbjct: 63 QEEESIRFDSSVIAFRNADLATRKTIDIQTMY 94 >gi|301066017|ref|YP_003788040.1| hypothetical protein LCAZH_0946 [Lactobacillus casei str. Zhang] gi|300438424|gb|ADK18190.1| hypothetical membrane protein [Lactobacillus casei str. Zhang] Length = 202 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+++ R M+QE L L +T Q + +E+ + + L +S+V ++ + Sbjct: 1 MKFGEQLAALRKHRTMTQEDLAGQLMVTRQTISSWEREKSFPDLTMLLQLSKVFDTSLDQ 60 Query: 73 FF 74 Sbjct: 61 LL 62 >gi|209901309|ref|YP_002290948.1| putative phage DNA-binding protein [Clostridium phage phiCD27] gi|199612190|gb|ACH91363.1| putative phage DNA-binding protein [Clostridium phage phiCD27] Length = 387 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR-LQHISEVLESPISFFF 74 G+R++ R+ GM+ +L E + Q V YE ++ + ++ I++ L P+ FF Sbjct: 12 GERLKKARIYRGMTVAELAERIDCQRQTVSMYENNKSKPNDNNVVKRIAKELGFPVKFFL 71 Query: 75 D 75 + Sbjct: 72 E 72 >gi|197261591|ref|YP_002154407.1| prophage repressor [Bacillus phage IEBH] gi|197092463|gb|ACH42338.1| prophage repressor [Bacillus phage IEBH] Length = 105 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 12/99 (12%), Positives = 34/99 (34%), Gaps = 2/99 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R+ R ++Q + L + +E G + S L I+++ + Sbjct: 1 MLSERLIYFRKKNKLTQNDVAHHLNVVRSTYTNWEAGRSEPDVSTLIKIADLYNISLDNL 60 Query: 74 F--DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + ++ ++ + +D L L + + Sbjct: 61 VGREYRIPPQVEVILDQISKLDTEPQKKALNLLVEYTYL 99 >gi|254418301|ref|ZP_05032025.1| hypothetical protein BBAL3_611 [Brevundimonas sp. BAL3] gi|196184478|gb|EDX79454.1| hypothetical protein BBAL3_611 [Brevundimonas sp. BAL3] Length = 67 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 24/63 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R SQ L E LG++ Q V E G I+ + + PI F Sbjct: 3 NRLKVLRAERDWSQAHLAELLGVSRQTVNALETGRYDPSLPLAFKIARIFDQPIESIFSE 62 Query: 77 SPT 79 Sbjct: 63 EEN 65 >gi|195937299|ref|ZP_03082681.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4024] Length = 152 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 32/90 (35%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 8 GQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPWRLLV 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + SD D GL R Sbjct: 68 SDSSEDSDPELLVPYAADGSCFHPGLASTR 97 >gi|167767683|ref|ZP_02439736.1| hypothetical protein CLOSS21_02218 [Clostridium sp. SS2/1] gi|167710700|gb|EDS21279.1| hypothetical protein CLOSS21_02218 [Clostridium sp. SS2/1] Length = 120 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 36/95 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKR++ R G +QE++ + L +T + E ++ L + +++L I + Sbjct: 19 VGKRMKTLRKQAGYTQEQIADALDVTVAFISNIENDRVKMNLRVLSYYAKLLNVSIDYLL 78 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + N + + F++ Sbjct: 79 RPESDENGEKDDVLNKEILRLLEKFSTDDKEKFVK 113 >gi|116254541|ref|YP_770377.1| hypothetical protein pRL100082 [Rhizobium leguminosarum bv. viciae 3841] gi|115259189|emb|CAK10307.1| unnamed protein product [Rhizobium leguminosarum bv. viciae 3841] Length = 96 Score = 46.4 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 32/83 (38%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G RI L R G+S E +GI +E + RL I+E L ++ Sbjct: 13 DDTIGGRISLARDANGLSVEAAALAIGIAAGTWIDWENDRDAPFPDRLVMIAEALGVSLA 72 Query: 72 FFFDVSPTVCSDISSEENNVMDF 94 + + I+S+ + Sbjct: 73 WLVSGRGEGPTWITSDNASAFRP 95 >gi|322382691|ref|ZP_08056546.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153337|gb|EFX45770.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 110 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 6/90 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K +G RI+ R G++Q++L E LG+ + YE G + L+ Sbjct: 1 MNEKEK------KQMGLRIKKLREEKGLTQDELAEMLGMKRTNIANYEAGRVIPPGNVLR 54 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN 90 ++++ + + + ++ Sbjct: 55 DLADIFAVSTDYLLGRETSGEVYTIAAHHD 84 >gi|315027060|gb|EFT38992.1| helix-turn-helix protein [Enterococcus faecalis TX2137] Length = 232 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + ++ + ++ Sbjct: 66 WLLHGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMGRLSEEQL 107 >gi|228911728|ref|ZP_04075501.1| hypothetical protein bthur0013_58480 [Bacillus thuringiensis IBL 200] gi|228847886|gb|EEM92767.1| hypothetical protein bthur0013_58480 [Bacillus thuringiensis IBL 200] Length = 374 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IQIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + + + + ++ ++ + Sbjct: 64 LISYTPQMKQEDIKNLYHRLAEAFSEKTFAEVMIECRGIIKKYYSCFPLLLQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K I EE M Sbjct: 124 HMLTEDTDKRIEILEEAM 141 >gi|228984945|ref|ZP_04145114.1| hypothetical protein bthur0001_16480 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774768|gb|EEM23165.1| hypothetical protein bthur0001_16480 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 167 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 + R G SQE + + + +T Q V K+E + L +SE+ + + Sbjct: 14 KKLRESKGFSQEDVAKKISVTRQAVYKWENDKSYPDIDNLILLSEMYNVTLDELIKGNQD 73 Query: 80 VCSDISSEENN 90 I S+ + Sbjct: 74 FKKKIHSDAED 84 >gi|295837554|ref|ZP_06824487.1| transcriptional regulator [Streptomyces sp. SPB74] gi|197698364|gb|EDY45297.1| transcriptional regulator [Streptomyces sp. SPB74] Length = 226 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 3/113 (2%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ + +D V KR+R R+ G S E+L ++ + + E G R+ L ++ Sbjct: 2 KQDDDDLDSLVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLVTLAR 61 Query: 65 VLESPISFFFDVSPTVCSDIS---SEENNVMDFISTPDGLQLNRYFIQIDDVK 114 L++ + + + + + GL + R + Sbjct: 62 ALDTSLDQLVETASDDVVSNPVVDGARGQMRWPVKADPGLTVVRQRMTEPPPD 114 >gi|182417693|ref|ZP_02949012.1| DNA-binding protein [Clostridium butyricum 5521] gi|237667491|ref|ZP_04527475.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378417|gb|EDT75948.1| DNA-binding protein [Clostridium butyricum 5521] gi|237655839|gb|EEP53395.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 183 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R +S + + E G++ + + E+G + S L IS L S F Sbjct: 8 IGNKLKNIRNSRNLSLDDVAELTGVSKAMLGQIERGKSNPTVSTLWKISTGLRVSFSSFI 67 Query: 75 DVSPTVCSDISSEENNV 91 D S I+ +E Sbjct: 68 DESKEELKVINIDEIEP 84 >gi|160946089|ref|ZP_02093303.1| hypothetical protein PEPMIC_00038 [Parvimonas micra ATCC 33270] gi|158447821|gb|EDP24816.1| hypothetical protein PEPMIC_00038 [Parvimonas micra ATCC 33270] Length = 207 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 40/86 (46%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 M+Q +L + LG+ V +E+ N + ++E+ + P+S+FFD + + + Sbjct: 1 MTQAQLAKKLGVAPTTVSSWERNDNNPLMDNITLMAEIFDVPVSYFFDKKDGIIVNEPAI 60 Query: 88 ENNVMDFISTPDGLQLNRYFIQIDDV 113 E +V + TP + + + D Sbjct: 61 EYSVSPVLKTPLYGSIAAGALSLVDP 86 >gi|134269474|emb|CAL69882.1| hypothetical protein [Streptococcus pyogenes] Length = 119 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 1/106 (0%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D G I+ RM G+++E++G + I + + E L + Sbjct: 2 RKKEDKFDFRAFGLAIKEARMKRGLTREQVGALIEIDPRYLTNIENKGQHPSIQVLYDLV 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +L+ + FF + + + T L L Sbjct: 62 SLLDVSVDEFFLPHNDLTKSTRRLQVEKLLDNFTDKELSLIEALAS 107 >gi|124010375|ref|ZP_01695021.1| transcriptional regulator [Microscilla marina ATCC 23134] gi|123983542|gb|EAY24007.1| transcriptional regulator [Microscilla marina ATCC 23134] Length = 121 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 52/128 (40%), Gaps = 11/128 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +IR R +SQ+++ L + Q K EKG + L+ I + L ++ Sbjct: 1 MDIGDKIRKVREAKKLSQKEVALTLNMDQSQYSKIEKGKTDPTTATLEKICKALNVEVAE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F S + ++ + Q+ D R+ I +++ S++ ++ Sbjct: 61 LFTSDKIFKDVESLD----------KSLVEKVQLLEQL-DEGERKSIFQIIDSLIIKKRL 109 Query: 133 YRTIEEEC 140 T+ + Sbjct: 110 KDTLNDAI 117 >gi|146298229|ref|YP_001192820.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146152647|gb|ABQ03501.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 138 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 3/133 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+ I R + M QE L + LG + Q + E + ++L+ +++ L Sbjct: 8 KHIGRNISRIRELRDMKQEALAQALGTSQQTISAIE-NSETIDDAKLEEVAKALGVTPEG 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKIIELVRSIVSSEK 131 + S I + N D ST + + F +D V++ Q+ +L ++ +EK Sbjct: 67 IKNYSDENILSIINNTFNSHD-SSTLNAVNFQPTFNPLDKVVELYQEKEKLYERLIQTEK 125 Query: 132 KYRTIEEECMVEQ 144 E+ + + Sbjct: 126 DKVEYLEKIVKGK 138 >gi|331268935|ref|YP_004395427.1| tetratricopeptide repeat/DNA binding domain-containing protein [Clostridium botulinum BKT015925] gi|329125485|gb|AEB75430.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum BKT015925] Length = 432 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR LGM+ + L IT Q+ E G + L++++ L I + Sbjct: 6 LGEKIKRRRKELGMTLKDL-AGDRITPGQISLVESGKSNPSMDLLEYLANSLNISIEYLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + T I + N+ + + L L + Sbjct: 65 ESEETQAEKICTYYENISESHIFNNQLNLAEQY 97 >gi|317471753|ref|ZP_07931093.1| hypothetical protein HMPREF1011_01441 [Anaerostipes sp. 3_2_56FAA] gi|316900776|gb|EFV22750.1| hypothetical protein HMPREF1011_01441 [Anaerostipes sp. 3_2_56FAA] Length = 159 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ +R G++Q +L LGIT + V K+E G S + + + L ++ Sbjct: 6 IGNYIKCKRKAQGLTQAELAGLLGITNKAVSKWENGKCLPDLSLHEKLCDALHITLNELV 65 Query: 75 DVSP-TVCSDISSEENNVMDFISTPDGLQLNR 105 + E N+ + + L+ + Sbjct: 66 AGQDIESTQLPEASEQNMKTMLGSCQHLRSLK 97 >gi|196231108|ref|ZP_03129968.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] gi|196224938|gb|EDY19448.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] Length = 224 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 4/95 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I+ +R LGMSQE+L + G+ V E+G+ V ++ ++ L + F+ Sbjct: 11 GTTIKSKRSELGMSQEELADRAGLHRTYVSDVERGMRNVSLISIEKLAHALGLSVWRLFE 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLN-RYFIQ 109 + + ++ ++ P+ ++L R F + Sbjct: 71 ---QASNGTAPDQLEILLVEDEPNDIELTQRAFKR 102 >gi|150388021|ref|YP_001318070.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149947883|gb|ABR46411.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 140 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 40/120 (33%), Gaps = 7/120 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R ++ + + G++ + + E + L ++ + I + Sbjct: 4 IGERIRFSRKANHLTLTDVNKLTGLSIGNLSELENNKFMPSTNALLAFKKLFQVSIDWLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + + F + + R +IE + + +++ Sbjct: 64 TGKYSNEMTTNPQIEVSDITYESGPV-----SFYSLSSDEQR--LIESYQGLSVEDQRAI 116 >gi|153831210|ref|ZP_01983877.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 623-39] gi|148873308|gb|EDL71443.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 623-39] Length = 181 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ E+ S F Sbjct: 9 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGFEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 F P + S S ++ + T Sbjct: 69 FANDPQLLSSERSFPDDPNMKVHT 92 >gi|42520474|ref|NP_966389.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225630361|ref|YP_002727152.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225630755|ref|YP_002727546.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|42410213|gb|AAS14323.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|225592342|gb|ACN95361.1| transcriptional regulator, putative [Wolbachia sp. wRi] gi|225592736|gb|ACN95755.1| transcriptional regulator, putative [Wolbachia sp. wRi] Length = 303 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 50/128 (39%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + +G+RIR R+I +Q+ L + +G+T +++ +YE+G + +L Sbjct: 156 TEREICTDSIYYRIGQRIREWRLIRRYTQKDLADKVGVTLKEIHEYERGYTTILFDKLYE 215 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L I + +S L+ + + + I Sbjct: 216 IAGALSVNIKVLLPETRESKKLLSLINEYREPESLDALVKSLSEDMKSGKEKVKKAEKIR 275 Query: 122 LVRSIVSS 129 + +++ + Sbjct: 276 VAKNLAKA 283 Score = 40.2 bits (92), Expect = 0.087, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 12/124 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R++ G +Q +L +G+T+Q+V YE G + L I+ VL Sbjct: 15 IGQKIEDSRLMRGHTQVELASEIGLTYQEVNSYENGYIPIPIEVLYVIARVLSVNAIDLL 74 Query: 75 DV---------SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 ++ N P ++ +I+ + R +E+ ++ Sbjct: 75 PEPVIVREDSYEDEEILYLTKIYENQKLGKIVPSLVRFVHISEKINQEEAR---LEIAKN 131 Query: 126 IVSS 129 +V Sbjct: 132 LVKE 135 >gi|325266458|ref|ZP_08133135.1| LexA family repressor/S24 family protease [Kingella denitrificans ATCC 33394] gi|324981901|gb|EGC17536.1| LexA family repressor/S24 family protease [Kingella denitrificans ATCC 33394] Length = 217 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/115 (12%), Positives = 45/115 (39%), Gaps = 3/115 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R ++Q L + + ++ + ++E + + A L +S V ++ Sbjct: 5 IGQRIKQMRKERHLTQNDLAKKIQGVSHAAISQWEADLTKPNADNLYDLSLVFNCDFAWL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIELVRSI 126 + + + + +S ++ +I + + I+ ++ + Sbjct: 65 LRGGSGNVTQHELLDISKIPVVSYDYLKEILENSNDTRIINSDKDEYIMSEIKYM 119 >gi|325961967|ref|YP_004239873.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468054|gb|ADX71739.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 191 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 6/113 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R+R R+ + L E GI+ + + E G R L +++ + Sbjct: 6 DDVLAAVGPRLRALRLSRETTLSALAEATGISVSTLSRLESGQRRPNLELLLPLAKAHQV 65 Query: 69 PISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 P+ P V + ++ G + + I + Sbjct: 66 PLDELVGAPATGDPRVHLRPIEAHGMTIVPLTRKPGG--IQAYKHILPAGPLE 116 >gi|322832298|ref|YP_004212325.1| Cupin 2 conserved barrel domain protein [Rahnella sp. Y9602] gi|321167499|gb|ADW73198.1| Cupin 2 conserved barrel domain protein [Rahnella sp. Y9602] Length = 185 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 27/62 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R LGMSQ K E G+T + E+ S LQ + V +S FF Sbjct: 9 GRRLSEIRQQLGMSQRKAAELSGLTHSAISTIEQDKVSPAVSTLQKLLRVYGLSLSEFFA 68 Query: 76 VS 77 Sbjct: 69 EE 70 >gi|257898126|ref|ZP_05677779.1| transcriptional regulator [Enterococcus faecium Com15] gi|257836038|gb|EEV61112.1| transcriptional regulator [Enterococcus faecium Com15] Length = 370 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 31/88 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K + R G++QE L E +G+T V K+E G + L ++ + + Sbjct: 8 KNVANLRKEKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVDELLGY 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN 104 P + + + + + Sbjct: 68 HPQLTKEQIRHFYQQWTTAFSEEPFEYV 95 >gi|229070587|ref|ZP_04203825.1| Transcriptional regulator, MerR [Bacillus cereus F65185] gi|228712492|gb|EEL64429.1| Transcriptional regulator, MerR [Bacillus cereus F65185] Length = 186 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 1/129 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +IN+G++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 5 NINIGQKIMAFRKDAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF + T ++ + G D + ++ L+ SS + Sbjct: 65 NFF-LEDTNTEELVVRADQRKKMTFPESGNVSYELLSPNLDGSLELALMNLLPQTASSME 123 Query: 132 KYRTIEEEC 140 EE Sbjct: 124 PVAHKGEEI 132 >gi|223939954|ref|ZP_03631821.1| transcriptional regulator, XRE family [bacterium Ellin514] gi|223891368|gb|EEF57862.1| transcriptional regulator, XRE family [bacterium Ellin514] Length = 203 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 41/123 (33%), Gaps = 5/123 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 VG + + + +R++ R G S + L G++ + + E+ + Sbjct: 13 VGTTRPADSTSNHFCRRLKQLRAERGWSLDSLANASGVSRSMISQVERNQANPTLAVAFR 72 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ ++ + + S + ++ + + Q+ + +K +E Sbjct: 73 IARAFGMSLAELVETPEAMSSVLVIRASDHEYHYRSDNDCQI-----RTLSPLHLEKDVE 127 Query: 122 LVR 124 Sbjct: 128 FYE 130 >gi|209883535|ref|YP_002287392.1| DNA-binding protein [Oligotropha carboxidovorans OM5] gi|209871731|gb|ACI91527.1| DNA-binding protein [Oligotropha carboxidovorans OM5] Length = 202 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 37/107 (34%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V ++G+RIR R GMS E+L G+T + K E+ + + +S V Sbjct: 18 AVSSSLGERIRFARQQRGMSLEQLATATGLTKSYLSKVERQLAVPSITTALKVSRVFGQT 77 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + S S +N F+ N I R Sbjct: 78 VGQLLGESLDESSLCIVRKNERHRFLKNDTHNGYNIEAIASSLPHKR 124 >gi|196035367|ref|ZP_03102772.1| transcriptional regulator SinR [Bacillus cereus W] gi|195992044|gb|EDX56007.1| transcriptional regulator SinR [Bacillus cereus W] Length = 107 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 2/98 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYFIQ 109 T +++ SE V D +++ + R F + Sbjct: 61 LLHDETTKEANLDSEWTQLVKDAMNSGVSKEQFREFRE 98 >gi|167763862|ref|ZP_02435989.1| hypothetical protein BACSTE_02243 [Bacteroides stercoris ATCC 43183] gi|167697978|gb|EDS14557.1| hypothetical protein BACSTE_02243 [Bacteroides stercoris ATCC 43183] Length = 191 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R +S E+L + G+ +Q+++ E ++ + L I+ VL + Sbjct: 5 KIVGEKIKSLRESQSISMEELAQRSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRLGT 64 Query: 73 FFDVSPT------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F D S+ + + I + ++ + D + II++ Sbjct: 65 FLDDQDENGPVVCRKSEAKDSISFSNNAIHSRKHMEYHSLSKSKADRHMEPFIIDVA 121 >gi|217322927|ref|YP_002336061.1| transcriptional regulator, MerR family [Bacillus cereus AH187] gi|217068632|gb|ACJ82879.1| transcriptional regulator, MerR family [Bacillus cereus AH187] Length = 211 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 50/144 (34%), Gaps = 19/144 (13%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ N + + + + + ++ R + G+S++K+ E L + +E G S L Sbjct: 84 MIKNLEKKD-ILKPLEENLKRLRSLKGLSRKKIAEELNTPYSTYAGWENGFREPDISTLN 142 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +I+ + I+ + ++ + + + L +I + D Sbjct: 143 NIASYYKVSINDLLN-------PEAAVRDEDTLKLISRLSKNLFETYISVPDEHR----- 190 Query: 121 ELVRSIVSSEKKYRTIEEECMVEQ 144 EKK E ++ Sbjct: 191 ------AELEKKLIAYMNEFKSQK 208 Score = 39.4 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 46/129 (35%), Gaps = 12/129 (9%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+ ++ R ++Q++L + I++ +E + L+ S + I Sbjct: 3 NTFLGQNLKHLRNSQKLTQKELASKINISYYAYNNWENDLREPDLLSLKKFSIYYDLLID 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + I L + + + D +K ++ ++ +RS+ + Sbjct: 63 ELVNTQIISSDSIE----------IQNQKLDMIKNLEKKDILKPLEENLKRLRSLKGLSR 112 Query: 132 KYRTIEEEC 140 K EE Sbjct: 113 KKIA--EEL 119 >gi|160939992|ref|ZP_02087337.1| hypothetical protein CLOBOL_04881 [Clostridium bolteae ATCC BAA-613] gi|158436572|gb|EDP14339.1| hypothetical protein CLOBOL_04881 [Clostridium bolteae ATCC BAA-613] Length = 74 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 30/66 (45%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + I VG RIR R L +SQE L G+ + E G + L+ I L+ Sbjct: 6 DIRIKVGNRIRQLRKELLLSQESLAFKAGLDRTYIASVENGKRNLSIMSLEKIIVALDCS 65 Query: 70 ISFFFD 75 ++ FF+ Sbjct: 66 MAEFFE 71 >gi|119477160|ref|ZP_01617396.1| hypothetical protein GP2143_02519 [marine gamma proteobacterium HTCC2143] gi|119449523|gb|EAW30761.1| hypothetical protein GP2143_02519 [marine gamma proteobacterium HTCC2143] Length = 107 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 34/98 (34%), Gaps = 1/98 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R++ R G++ + G++ Q V + A + IS L+ + Sbjct: 1 MTIDHRVKEIRNKHGLTHTAFAKIAGVSRQLVYNWYNQGTSPSADAVLRISRTLDISPYW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS-TPDGLQLNRYFIQ 109 F + +E + + +L F++ Sbjct: 61 FLYGKGDMYVVKGQQEKIAELLVDLSDADKELLEIFLR 98 >gi|11138961|gb|AAG31560.1| SgraIC control protein [Streptomyces griseus] Length = 79 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 1/78 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+ + ++G +R R+ G SQE L E G+ V E+G L +++ L Sbjct: 1 MPD-LCSHLGLAVRAVRLRRGWSQELLSEKSGLDRTYVSGLERGRRNPALLTLARLADAL 59 Query: 67 ESPISFFFDVSPTVCSDI 84 E P+S + + Sbjct: 60 EVPLSELIRDAEENSGAL 77 >gi|24378588|ref|NP_720543.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|24376441|gb|AAN57849.1|AE014858_1 putative transcriptional regulator [Streptococcus mutans UA159] Length = 304 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 16 GKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GK+I+ R+ G+++E + + ++ +Q+ + E G + ++ +I+ L + + Sbjct: 6 GKKIKSLRLEKGLTKEAVCLDESQLSTRQLTRIESGQSTPTLNKAVYIAGRLGVTLGYLT 65 Query: 75 DVSPTVCSDISSEENN 90 D E Sbjct: 66 DGENVELPSRYKELKY 81 >gi|311108474|ref|YP_003981327.1| hypothetical protein AXYL_05312 [Achromobacter xylosoxidans A8] gi|310763163|gb|ADP18612.1| helix-turn-helix family protein 12 [Achromobacter xylosoxidans A8] Length = 190 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Query: 2 VGNKKIPN-PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + N IP +D + R++ R G S ++L G++ + + E AS L Sbjct: 1 MENNAIPEADLDRRIAGRLKALRQERGWSLDELAGRAGLSRATLSRLENAEVSPTASALG 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 + +S + + + ++ + Sbjct: 61 KLCGAYGLTMSRLMRMVEDDFAPLVPQQAQAVW 93 >gi|303229090|ref|ZP_07315894.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] gi|302516243|gb|EFL58181.1| helix-turn-helix protein [Veillonella atypica ACS-134-V-Col7a] Length = 216 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + IR R + +SQ+++ + L +F +QK+E G+ +L ++++L I Sbjct: 1 MKLSDNIRYFRKLRNLSQDEIAKRLGYKSFTTIQKWETGMAEPPVGKLYELADILHVSIM 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFIST 97 + ++ N ++ Sbjct: 61 DLLKDNLDAEEALTVSTNFYHYVPAS 86 >gi|293395281|ref|ZP_06639566.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] gi|291422238|gb|EFE95482.1| cro/CI family transcriptional regulator [Serratia odorifera DSM 4582] Length = 185 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R LG+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSQIRQQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFA 68 Query: 76 VSPTVCSD 83 + Sbjct: 69 EPERLDQP 76 >gi|228987486|ref|ZP_04147605.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772218|gb|EEM20665.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 115 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 29/72 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I+ R ++QE+L E G++ Q++ +E + L+ ++ + Sbjct: 5 VGQNIKRLRKSFDLTQEQLSERTGLSRGQIKNWETDRHEPDLESLKVLASYFNTSTDALL 64 Query: 75 DVSPTVCSDISS 86 + + Sbjct: 65 NFENKKEDALLE 76 >gi|255035006|ref|YP_003085627.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254947762|gb|ACT92462.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 394 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 25/72 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V I+ R + G++QE+ + I + YE+ + L++++ + Sbjct: 4 VSNNIKYLRRLNGLTQEQFARKIAIKRSLLGAYEEARANPNLTNLKNMAAAFGVSVDNLL 63 Query: 75 DVSPTVCSDISS 86 + Sbjct: 64 KNDLRKLRETPE 75 >gi|256377105|ref|YP_003100765.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921408|gb|ACU36919.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 200 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G++ +L G++ + + E G R L ++ + P+ Sbjct: 11 AVGPRLRALRRDRGVTLAELSLRTGVSESTLSRLESGQRRATLEFLLLLARAYDVPLDDL 70 >gi|224583844|ref|YP_002637642.1| hypothetical protein SPC_2069 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468371|gb|ACN46201.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 200 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ V +RI+ R MS ++L G++ + + E + L I+ + Sbjct: 16 STINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGV 75 Query: 69 PISFFFDVSPTV 80 ++ F +V+ Sbjct: 76 SVADFVNVASEP 87 >gi|218131512|ref|ZP_03460316.1| hypothetical protein BACEGG_03131 [Bacteroides eggerthii DSM 20697] gi|317476468|ref|ZP_07935717.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|329956590|ref|ZP_08297163.1| DNA-binding helix-turn-helix protein [Bacteroides clarus YIT 12056] gi|217986444|gb|EEC52781.1| hypothetical protein BACEGG_03131 [Bacteroides eggerthii DSM 20697] gi|316907494|gb|EFV29199.1| helix-turn-helix domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|328523962|gb|EGF51038.1| DNA-binding helix-turn-helix protein [Bacteroides clarus YIT 12056] Length = 191 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R +S E+L + G+ +Q+++ E ++ + L I+ VL + Sbjct: 5 KIVGEKIKSLRESQSISMEELAQRSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRLGT 64 Query: 73 FFDVSPT------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F D S+ + + I + ++ + D + II++ Sbjct: 65 FLDDQDENGPVVCRKSEAKDSISFSNNAIHSRKHMEYHSLSKSKADRHMEPFIIDVA 121 >gi|197121330|ref|YP_002133281.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171179|gb|ACG72152.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] Length = 192 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K PV VG +R R +S EKL + G++ + + E G + + L Sbjct: 1 MAPAGKDLTPV---VGGNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLW 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 IS L P S T + +S+ DG +R D+ + R + Sbjct: 58 KISSALSVPFSALITARSTGGLHVLR--AEHAKVLSSHDGSYSSRALFPFDEPR-RVEFY 114 Query: 121 EL 122 EL Sbjct: 115 EL 116 >gi|149007308|ref|ZP_01830966.1| hypothetical protein CGSSp18BS74_00606 [Streptococcus pneumoniae SP18-BS74] gi|225859187|ref|YP_002740697.1| hypothetical protein SP70585_1461 [Streptococcus pneumoniae 70585] gi|307127009|ref|YP_003879040.1| hypothetical protein SP670_0875 [Streptococcus pneumoniae 670-6B] gi|147761112|gb|EDK68080.1| hypothetical protein CGSSp18BS74_00606 [Streptococcus pneumoniae SP18-BS74] gi|225720333|gb|ACO16187.1| conserved domain protein [Streptococcus pneumoniae 70585] gi|306484071|gb|ADM90940.1| conserved domain protein [Streptococcus pneumoniae 670-6B] gi|332074745|gb|EGI85219.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] Length = 69 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R+ L ++Q +L + +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVELDLTQGQLADAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 78 PTVC 81 Sbjct: 66 EDEK 69 >gi|71725303|ref|YP_272277.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558893|gb|AAZ38102.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 118 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 4/98 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +I+ R + GMSQ L E +G V YE+G++ G +L IS + Sbjct: 7 FVGAKIKALRKLSGMSQAALAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPGEL 66 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 DV T + + + +P+ L+ F Sbjct: 67 LPGGQDVLRTRLISLRQAIADKAIEVDSPESLEEILAF 104 >gi|85715308|ref|ZP_01046291.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] gi|85697954|gb|EAQ35828.1| transcriptional regulator, XRE family protein [Nitrobacter sp. Nb-311A] Length = 483 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 37/100 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R LG+SQ +L E LGI+ V E+ V A L ++E + + Sbjct: 9 LFVGPRFRRIRQQLGLSQTQLAEGLGISPSYVNLIERNQRPVTAQILLRLAEAYDLDLRD 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +E + F Q R ++ Sbjct: 69 LATADEDRFFAELNEVFSDPLFRQIDIPKQELRDLAELCP 108 >gi|242373319|ref|ZP_04818893.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242349029|gb|EES40631.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 179 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++R R I ++QE+L E ++ + + E I EVL + S Sbjct: 1 MDIGSKLRNLRRIKNLTQEELAERTDLSKGYISQIESQHASPSMETFLSILEVLGTSASD 60 Query: 73 FFDVS 77 FF S Sbjct: 61 FFKES 65 >gi|228990384|ref|ZP_04150349.1| HTH-type transcriptional regulator sinR [Bacillus pseudomycoides DSM 12442] gi|228996484|ref|ZP_04156123.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock3-17] gi|229004136|ref|ZP_04161937.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock1-4] gi|228756997|gb|EEM06241.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock1-4] gi|228763116|gb|EEM12024.1| HTH-type transcriptional regulator sinR [Bacillus mycoides Rock3-17] gi|228768910|gb|EEM17508.1| HTH-type transcriptional regulator sinR [Bacillus pseudomycoides DSM 12442] Length = 107 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIANVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE 87 + + SE Sbjct: 61 LLHDEIPSENQLDSE 75 >gi|229194113|ref|ZP_04320982.1| transcriptional regulator, XRE [Bacillus cereus ATCC 10876] gi|228589370|gb|EEK47320.1| transcriptional regulator, XRE [Bacillus cereus ATCC 10876] Length = 108 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 4/103 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G IR R G++Q++L + L ++ + YE+ + + L I++ + F Sbjct: 5 GNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFKVSTDFLLG 64 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 FD + N + + +L R++ I + Sbjct: 65 RDFDAEGKRNDSELDQWLNDIKLAPSQKREELKRFWKFIMQEE 107 >gi|242309806|ref|ZP_04808961.1| predicted protein [Helicobacter pullorum MIT 98-5489] gi|239523807|gb|EEQ63673.1| predicted protein [Helicobacter pullorum MIT 98-5489] Length = 186 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 12/145 (8%) Query: 6 KIPNPVDIN----VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 K+ +D +G RIR R LG++QE+ + I + + YE G R+ + + Sbjct: 38 KMKGDIDYEEMLKIGSRIREAREFLGLTQEEFAKNFHIDTRLLSFYETGERRIPVTFIIK 97 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-------VK 114 + E L+ F + + + P YF + + Sbjct: 98 MYECLKVNPIFVLFGVGSSIIKEI-DLKKFFVRLENPIVSSFIEYFTENTSTPTKTIFER 156 Query: 115 VRQKIIELVRSIVSSEKKYRTIEEE 139 Q+ + L + + E + ++ Sbjct: 157 YAQRDMALENKMAAKEARDIRRGKK 181 >gi|254488744|ref|ZP_05101949.1| DNA-binding protein [Roseobacter sp. GAI101] gi|214045613|gb|EEB86251.1| DNA-binding protein [Roseobacter sp. GAI101] Length = 188 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 35/82 (42%), Gaps = 3/82 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P+ + + +R++ R G+S + + + G++ V + E+G + + L Sbjct: 1 MTDD---PDAILNQLPRRLKAARAAQGLSLDAVAKLSGVSRSMVSQIERGESSPTIATLW 57 Query: 61 HISEVLESPISFFFDVSPTVCS 82 +++ L+ + D Sbjct: 58 NLTRALQVDFAGLLDGGQRPAE 79 >gi|91780942|ref|YP_556149.1| anaerobic benzoate catabolism transcriptional regulator [Burkholderia xenovorans LB400] gi|91693602|gb|ABE36799.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia xenovorans LB400] Length = 323 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 9/120 (7%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PV + +RIR R GM++++L G++ + + E G V S LQ +S L Sbjct: 21 DPVLSELARRIRTLRAQRGMTRKQLALQSGVSIPHLARIESGEGNVSVSLLQKLSVALNL 80 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKIIELV 123 PI S +++ ++ F+ +L R + R++ I L+ Sbjct: 81 PIQDLL----ADGSSQNADLTMLIQFLKQQTPAELARLRQMLTSIPVVAAASRRQRIALI 136 >gi|187730851|ref|YP_001879887.1| helix-turn-helix domain-containing protein [Shigella boydii CDC 3083-94] gi|187427843|gb|ACD07117.1| helix-turn-helix domain protein [Shigella boydii CDC 3083-94] Length = 109 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 32/82 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + R+R +R G++ +L L + + + ++E G S L ++ +L Sbjct: 7 NSAINNRLRTQREACGLTTAELARLLDLDEEIIIQWESGEYEPTISMLIPLANILGCDPM 66 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 + T SEE D Sbjct: 67 WLLTGEVTPPEQPKSEEQQHHD 88 >gi|307128006|ref|YP_003880037.1| transcriptional regulator [Streptococcus pneumoniae 670-6B] gi|306485068|gb|ADM91937.1| transcriptional regulator [Streptococcus pneumoniae 670-6B] Length = 383 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F + Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYF-E 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 SS ++T + + + Sbjct: 63 QEEESIRFDSSVIAFRNADLATRKTIDIQTMY 94 >gi|296451357|ref|ZP_06893095.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296880293|ref|ZP_06904258.1| XRE family transcriptional regulator [Clostridium difficile NAP07] gi|296259773|gb|EFH06630.1| XRE family transcriptional regulator [Clostridium difficile NAP08] gi|296428736|gb|EFH14618.1| XRE family transcriptional regulator [Clostridium difficile NAP07] Length = 106 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 2/90 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 KR+R R G++Q +LGE +G++ + + YE L +++V + + + Sbjct: 4 KRLRELRKEFGLTQRELGEKVGVSQRVLGYYETENRFPDEHILNKLADVFDVSVDYLLGR 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +++ N + + QLN Sbjct: 64 TLVKENIDTVAAHRKNPHEELPEEAQEQLN 93 >gi|294500289|ref|YP_003563989.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|294350226|gb|ADE70555.1| DNA-binding protein [Bacillus megaterium QM B1551] Length = 66 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R MSQ++L + G++ Q + E + ++ L + + F Sbjct: 4 NRIKELRKSKRMSQDELAKVCGVSRQTINAIENNKYDPSLTLAFQLAAELGATVDELF 61 >gi|293570317|ref|ZP_06681377.1| DNA-binding protein [Enterococcus faecium E980] gi|291609596|gb|EFF38858.1| DNA-binding protein [Enterococcus faecium E980] Length = 370 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 31/88 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K + R G++QE L E +G+T V K+E G + L ++ + + Sbjct: 8 KNVANLRKKKGVTQETLAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVDELLGY 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN 104 P + + + + + Sbjct: 68 HPQLTKEKIRHFYQQWTTAFSEEPFEYV 95 >gi|229098833|ref|ZP_04229770.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] gi|229104994|ref|ZP_04235649.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|229117859|ref|ZP_04247222.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228665591|gb|EEL21070.1| Transcriptional regulator, MerR [Bacillus cereus Rock1-3] gi|228678422|gb|EEL32644.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-28] gi|228684581|gb|EEL38522.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-29] Length = 194 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 14 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 73 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + EE + ++ Sbjct: 74 LLLEQKDRLKIVKKEERKYSVYGKDEQRIEHV 105 >gi|229151508|ref|ZP_04279711.1| hypothetical protein bcere0011_30530 [Bacillus cereus m1550] gi|228632051|gb|EEK88677.1| hypothetical protein bcere0011_30530 [Bacillus cereus m1550] Length = 374 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ--------LNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + + + + + + ++ ++ + Sbjct: 64 LISYTPQMEQEDIKDLYHRLAEAFSEEPFDEVMIECRGIIKKYYSCFPLLLQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K + EE M Sbjct: 124 HMLTEDTDKRIEMLEEAM 141 >gi|161503250|ref|YP_001570362.1| hypothetical protein SARI_01318 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864597|gb|ABX21220.1| hypothetical protein SARI_01318 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 200 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 7/87 (8%) Query: 1 MVGNKKIPNP-------VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR 53 M +P ++ V +RI+ R +S ++L G++ + + E Sbjct: 1 MTKKVNLPTAAGTDVRTINEAVSQRIKQFRRQKKISLDELSRLSGVSKGMLVEIEGCKAN 60 Query: 54 VGASRLQHISEVLESPISFFFDVSPTV 80 + L I+ + ++ F +V+ Sbjct: 61 PSIALLCKIAAAMGVSVADFVNVASEP 87 >gi|157371454|ref|YP_001479443.1| DNA-binding transcriptional repressor PuuR [Serratia proteamaculans 568] gi|157323218|gb|ABV42315.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 185 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 31/75 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R+ LG+SQ ++ E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSQIRLQLGLSQRRVAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSAFFA 68 Query: 76 VSPTVCSDISSEENN 90 E Sbjct: 69 EPEAANEPKVVIEAE 83 >gi|15965148|ref|NP_385501.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309160|ref|ZP_07588831.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] gi|307322243|ref|ZP_07601610.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|15074328|emb|CAC45974.1| Transcription regulator [Sinorhizobium meliloti 1021] gi|306892094|gb|EFN22913.1| transcriptional regulator, XRE family [Sinorhizobium meliloti AK83] gi|306900306|gb|EFN30922.1| transcriptional regulator, XRE family [Sinorhizobium meliloti BL225C] Length = 132 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 45/124 (36%), Gaps = 23/124 (18%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R G+S ++L LG+ + +E+ A+RL ++ VL ++ Sbjct: 21 LGGRIWRARDATGLSTKELASKLGVRNDTISSWERDRAEPRANRLFMLAGVLGVTPAWLM 80 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 D + + + ++R++ ++LV+ + + Sbjct: 81 AGIGRAPDDSTGDASG----------------------DELRKQ-LDLVKKLHEQTAEAI 117 Query: 135 TIEE 138 E Sbjct: 118 AALE 121 >gi|83858372|ref|ZP_00951894.1| putative DNA-binding protein [Oceanicaulis alexandrii HTCC2633] gi|83853195|gb|EAP91047.1| putative DNA-binding protein [Oceanicaulis alexandrii HTCC2633] Length = 76 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + PV+ R++ R+ G+S+++L + + Q + E+G +SE L Sbjct: 1 MAEPVNFQ--NRVKTYRVDCGLSRQELATRVQVHPQTIGAIERGQFNPTIEVALRLSETL 58 Query: 67 ESPISFFFD 75 + F Sbjct: 59 GVGLDALFS 67 >gi|312794927|ref|YP_004027849.1| transcriptional regulator [Burkholderia rhizoxinica HKI 454] gi|312166702|emb|CBW73705.1| Transcriptional regulator [Burkholderia rhizoxinica HKI 454] Length = 180 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 1/101 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R+ LG+SQE+ G+ + YE A L ++E L + + Sbjct: 17 IGARLREERLRLGLSQEEFAAIGGVLRRAQSHYESDERSPDAKYLSAVAE-LGVDLLYVL 75 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + + + + ++ R + + Sbjct: 76 RGTRQASDEAGEAATSSEFDTEEQELIENYRALNEAGKAAL 116 >gi|307267664|ref|ZP_07549123.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|306917316|gb|EFN47631.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] Length = 427 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ +SQ +L + + + E G +L +++E LE P+S+FF Sbjct: 5 IGDKIKALRLQKNLSQSELCGNFM-SRVVLSRIESGKALPSLEQLAYLAEKLEVPVSYFF 63 Query: 75 DVS 77 S Sbjct: 64 SDS 66 >gi|237750719|ref|ZP_04581199.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] gi|229373809|gb|EEO24200.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879] Length = 243 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R G++Q L + G++ +Q YE + L+ I+ L+ + Sbjct: 1 MKLGLKIKTAREEKGLTQNDLVKISGVSRASLQLYEADKGNITLDNLEKIANALDYEVVH 60 Query: 73 FFD 75 F Sbjct: 61 FLS 63 >gi|268590865|ref|ZP_06125086.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291313648|gb|EFE54101.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 112 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K P P+ VG +R RR+ G++ +G L I+ QQV +YE+G NR+ L Sbjct: 1 MANESKHP-PISHVVGGYLRRRRLDKGLTGRDVGRLLNISQQQVSRYERGSNRMTLDFLM 59 Query: 61 HISEVLESPISFFF 74 + L F Sbjct: 60 TYLDTLGLRYEDFM 73 >gi|226322523|ref|ZP_03798041.1| hypothetical protein COPCOM_00295 [Coprococcus comes ATCC 27758] gi|225209017|gb|EEG91371.1| hypothetical protein COPCOM_00295 [Coprococcus comes ATCC 27758] Length = 197 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 7/96 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R G++ +++ E G T + + E+ + L+ I+ L+ + Sbjct: 3 GSRIREMRKKRGLTLKEVAEATGYTIGHISQIERDLKSPSLVALRKIAVCLDCSEVWLIM 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + E + L R +I Sbjct: 63 GDSELSAKSPEEGKKSKESY-------LVRKENRIP 91 >gi|221316986|ref|YP_002533130.1| prophage LambdaBa02, repressor protein [Bacillus cereus Q1] gi|221243318|gb|ACM16026.1| prophage LambdaBa02, repressor protein [Bacillus cereus Q1] Length = 112 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 7/117 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI+ R G +Q+ LGE +G + E + ++VL+ + Sbjct: 3 GERIKQLRKARGWTQDDLGEAVGFKKATISLIENNKRNREERSVTKFADVLDCTTDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 +S DF + ++ + + ++ + ++ S + + KK Sbjct: 63 LSDDPKLSGEQNTRLKKDFD------DIYNKLKELPEAE-QEMYLRMINSFIDANKK 112 >gi|206973491|ref|ZP_03234411.1| conserved domain protein [Bacillus cereus AH1134] gi|229181778|ref|ZP_04309089.1| Transcriptional regulator [Bacillus cereus 172560W] gi|206731581|gb|EDZ48783.1| conserved domain protein [Bacillus cereus AH1134] gi|228601695|gb|EEK59205.1| Transcriptional regulator [Bacillus cereus 172560W] Length = 65 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R+ G++Q++L + + +T Q + E HI++ L+ + F Sbjct: 4 SKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDKSLDKLFWE 63 Query: 77 S 77 Sbjct: 64 E 64 >gi|329937439|ref|ZP_08286997.1| putative transcriptional regulator [Streptomyces griseoaurantiacus M045] gi|329303315|gb|EGG47202.1| putative transcriptional regulator [Streptomyces griseoaurantiacus M045] Length = 232 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 34/84 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V +RIR R+ G S E+L ++ + + E G R+ +L ++ L++ Sbjct: 11 DLDGLVRRRIRALRVAQGWSLEELAARARLSQSTLSRIETGRRRLALDQLVTLARALDTS 70 Query: 70 ISFFFDVSPTVCSDISSEENNVMD 93 + + + S + Sbjct: 71 LDQLVETAVDDVVSHPSVDAAHGQ 94 >gi|330447297|ref|ZP_08310947.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491488|dbj|GAA05444.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 125 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 32/81 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ R G++Q + + L + Q E G L ISE+ E P+++F Sbjct: 8 IAARIKEAREWKGLTQVHMAQQLKVARQTYLDLETGKTEPKVRLLSEISEITERPLTWFV 67 Query: 75 DVSPTVCSDISSEENNVMDFI 95 + S + + + Sbjct: 68 YGDEGIEILESEYKEEIDRLL 88 >gi|229029051|ref|ZP_04185150.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1271] gi|228732331|gb|EEL83214.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH1271] Length = 107 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T + + SE V D +S+ + R F Sbjct: 61 LLHDETTKENHLDSEWTQLVKDAMSSGVSKEQFREF 96 >gi|170761027|ref|YP_001788505.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169408016|gb|ACA56427.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 189 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 51/120 (42%), Gaps = 4/120 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I+ R ++ ++L E ++ + + E+G+ V L I++ L+ +++FF Sbjct: 5 IGKKIKKLRTNKKLTLKELSEKTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVSLTYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + ++ N +D++ + + L+ + + K+ Sbjct: 65 QAPKKNKKIVLRSYEKEILQVENNRFIKYNLS----NDLEDKSFLPRLIEILPTDSKENI 120 >gi|69245870|ref|ZP_00603687.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|256853747|ref|ZP_05559112.1| helix-turn-helix domain-containing protein [Enterococcus faecalis T8] gi|257879179|ref|ZP_05658832.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257882002|ref|ZP_05661655.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|68195572|gb|EAN10014.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|256710690|gb|EEU25733.1| helix-turn-helix domain-containing protein [Enterococcus faecalis T8] gi|257813407|gb|EEV42165.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817660|gb|EEV44988.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] Length = 87 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R G+SQ +L + + +T Q V ++ G +++ +SE+L PI+ F Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELFSD 80 >gi|94310168|ref|YP_583378.1| anaerobic benzoate catabolism transcriptional regulator [Cupriavidus metallidurans CH34] gi|93354020|gb|ABF08109.1| transcriptional regulator, XRE family with shikimate kinase activity [Cupriavidus metallidurans CH34] Length = 316 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 55/147 (37%), Gaps = 24/147 (16%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P ++G+RIR R GMS++ L ++ + + E G L+ ++ L+ Sbjct: 24 DPYLTHLGERIRSLRAARGMSRKDLARGADVSERYLANLETGTGNASVLLLRQVANALDV 83 Query: 69 PISFFF------DVSPTVCSDISSEENNVMDFISTPDGLQLNR-------YFIQIDDVKV 115 P+ + + ++E + ++ +++ L R + Sbjct: 84 PLPVVLAEVDGHADAGGAGNPRATEFSQLIQWLAQLPASDLARVREAARHALSPTESRDA 143 Query: 116 RQKIIELV-----------RSIVSSEK 131 R + I L+ R++ ++E Sbjct: 144 RHRRIALIGLRGAGKSTLGRALAAAED 170 >gi|327540144|gb|EGF26738.1| transcriptional regulator [Rhodopirellula baltica WH47] Length = 374 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 3/100 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR--VGASRLQHISEVLESPISFF 73 G R++ R GM+Q++L E I + + E A ++ I++ + FF Sbjct: 4 GTRLKWAREAAGMTQKQLSEATDIGISTICELESDGRERGPSALQMVKIADAVRRRPDFF 63 Query: 74 FD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 F+ P + E+ ++L + +++ Sbjct: 64 FEPGDPLHEVVLWREKPAESGAQIELQLIELAGQYQRLEQ 103 >gi|301052920|ref|YP_003791131.1| transcriptional regulator [Bacillus anthracis CI] gi|300375089|gb|ADK03993.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 107 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T + + SE V D +S+ + R F Sbjct: 61 LLHDETTKENHLDSEWTQLVKDAMSSGVSKEQFREF 96 >gi|291540886|emb|CBL13997.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 118 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 33/71 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 1 MPIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVL 60 Query: 67 ESPISFFFDVS 77 + + Sbjct: 61 HISLDTLINPD 71 >gi|322418045|ref|YP_004197268.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320124432|gb|ADW11992.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 106 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 42/90 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R +SQE+L E +G+ +Q+ + E G + L+ I++ L+ + Sbjct: 8 LGMRIREVRKARHLSQERLAEKVGVEPKQISRIEGGKSAPSLDTLEAIAKHLQVQMKDLL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D V + ++++ + + +L Sbjct: 68 DFQHLVPEETAADQAVRLLGMMDEKTKRLA 97 >gi|228902888|ref|ZP_04067030.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|228954646|ref|ZP_04116669.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228967431|ref|ZP_04128462.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|229048068|ref|ZP_04193643.1| Transcriptional regulator, MerR [Bacillus cereus AH676] gi|229129642|ref|ZP_04258610.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|229192573|ref|ZP_04319534.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|228590880|gb|EEK48738.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|228653759|gb|EEL09629.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-Cer4] gi|228723312|gb|EEL74682.1| Transcriptional regulator, MerR [Bacillus cereus AH676] gi|228792267|gb|EEM39838.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228804973|gb|EEM51569.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228856762|gb|EEN01280.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] Length = 194 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 14 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 73 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + EE + ++ Sbjct: 74 LLLEQKDRLKIVKKEERKYSVYGKDEQRIEHV 105 >gi|254975050|ref|ZP_05271522.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092439|ref|ZP_05321917.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100520|ref|ZP_05329497.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306462|ref|ZP_05350633.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255314177|ref|ZP_05355760.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516856|ref|ZP_05384532.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649957|ref|ZP_05396859.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|306520039|ref|ZP_07406386.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|328887610|emb|CAJ68359.2| Transcriptional regulator, HTH-type [Clostridium difficile] Length = 194 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++G +I+ R M+ + + E ++ + + E+G+ V L I+ VL+ + Sbjct: 1 MNKDIGAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 ++FF + + + + + + + ++IE++ S S E Sbjct: 61 TYFFMKPKEHKRAVLRSYEKEVFDVENSTFI-HYHLSSSLKEKTMLPRLIEILPSKSSEE 119 >gi|167765761|ref|ZP_02437814.1| hypothetical protein CLOSS21_00252 [Clostridium sp. SS2/1] gi|167712478|gb|EDS23057.1| hypothetical protein CLOSS21_00252 [Clostridium sp. SS2/1] Length = 264 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 52/133 (39%), Gaps = 10/133 (7%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R GMSQ+ L + + +T Q V ++E G L+ +S+ + I+ Sbjct: 16 ILKLRTERGMSQDDLADKVMVTRQAVSRWENGDTVPNTDTLRLLSKEFDVSINMLLGEPR 75 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV------KVRQKIIEL-VRSIVSS-- 129 + + + LN + + ++I++ V+++V+ Sbjct: 76 KLICQCCGMPMDDDSILGRDKDGTLNEEYCKWCYADGTYTYNDMDELIDVCVKNMVNENF 135 Query: 130 -EKKYRTIEEECM 141 E++ R+ +E + Sbjct: 136 TEEQARSYLKEML 148 >gi|170729064|ref|YP_001763090.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814411|gb|ACA88995.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 77 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R +Q L E L ++ Q V EKG ++ + ++PI FD Sbjct: 3 NRLKVLRAEQDWTQADLAEKLDVSRQTVNAIEKGKYDPSLPLAFKLARLFDTPIEAIFDD 62 Query: 77 SPTVCSDIS 85 + SD S Sbjct: 63 EVRIDSDKS 71 >gi|120436979|ref|YP_862665.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] gi|117579129|emb|CAL67598.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] Length = 252 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IR R + +SQ+ E + + YE+G + + I+ PI Sbjct: 5 GKNIRKIRSVKSLSQQSFAEIFDLKRGTLGAYEEGRSEPKIETIIKIANHFSIPIGDILT 64 Query: 76 VS 77 Sbjct: 65 EE 66 >gi|83859577|ref|ZP_00953097.1| predicted transcription regulator, containing DNA-binding HTHdomain [Oceanicaulis alexandrii HTCC2633] gi|83851936|gb|EAP89790.1| predicted transcription regulator, containing DNA-binding HTHdomain [Oceanicaulis alexandrii HTCC2633] Length = 75 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 14 NVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + RIR R G M+Q +L +G+T Q V E+G I+EV ++P++ Sbjct: 6 QIKNRIRELRFHAGEMTQAELARRIGVTRQTVLAIEQGKYSPSLEVAFQIAEVFKTPLTD 65 Query: 73 FFDVSPTVCS 82 F+ +P Sbjct: 66 VFEYAPDGSP 75 >gi|325478503|gb|EGC81616.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 129 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 42/119 (35%), Gaps = 5/119 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFFD 75 +++ R I +SQE L + ++ + + +YE G ++ + +++ L++ + Sbjct: 5 NKLKELREIKKLSQEDLAKLCQVSTKTISRYELGQSKPRYRKTYDLLAKHLDTTHDYLVT 64 Query: 76 VSPTVCSDISSEENNVMDFISTPD--GLQLNRYFIQIDDVKVRQKIIELVRS--IVSSE 130 + G+ QI D R + + + I SE Sbjct: 65 DEDEFILKARENFGKEGAKDAEDMINGVIGLMAGGQIPDEDKRTILDAITEAYYIARSE 123 >gi|317495916|ref|ZP_07954279.1| hypothetical protein HMPREF0432_00882 [Gemella moribillum M424] gi|316914093|gb|EFV35576.1| hypothetical protein HMPREF0432_00882 [Gemella moribillum M424] Length = 214 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 3/102 (2%) Query: 1 MVGNKKIPNPVDI---NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M+ +++ ++I VG RI+ R+ G + E G+ G++ V K+E+G + Sbjct: 1 MMKKEELHMKININKNAVGSRIKQIRLNKGYTLEAFGKLFGVSKSNVLKWEQGQSLPNKE 60 Query: 58 RLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 RL IS++ + ++ S + + + + Sbjct: 61 RLASISKIADMSVNELLYGSMDEFIENNFPAIHEYQTGQSSF 102 >gi|293375349|ref|ZP_06621631.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|292646105|gb|EFF64133.1| DNA-binding protein [Turicibacter sanguinis PC909] Length = 367 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 8/136 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVGK I L+R ++Q++L + +G++ + K+E G + + L ++ I Sbjct: 4 INVGKMIILKRKEKKITQDELAKYIGVSKAAISKWETGQSYPDITLLPILAAYFNMSIDE 63 Query: 73 FFDVSPTVCSDISSE--ENNVMDFISTPD------GLQLNRYFIQIDDVKVRQKIIELVR 124 P + + + DF P +L + + + + ++ + Sbjct: 64 LIGYEPQMVKEDIQKLYVRLCEDFAKKPFEEVILECEELIKKYYSCFPLLHQMGLLLINH 123 Query: 125 SIVSSEKKYRTIEEEC 140 S+++ + T E Sbjct: 124 SMLALDVLETTRLNEL 139 >gi|257886939|ref|ZP_05666592.1| transcriptional regulator [Enterococcus faecium 1,141,733] gi|257822993|gb|EEV49925.1| transcriptional regulator [Enterococcus faecium 1,141,733] Length = 370 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 31/88 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K + R G++QE L E +G+T V K+E G + L ++ + + Sbjct: 8 KNVANLRKEKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVDELLGY 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN 104 P + + + + + Sbjct: 68 HPQLTKEQIRHFYQQWTTAFSEEPFEYV 95 >gi|225571153|ref|ZP_03780151.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM 15053] gi|225159984|gb|EEG72603.1| hypothetical protein CLOHYLEM_07241 [Clostridium hylemonae DSM 15053] Length = 134 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 42/94 (44%), Gaps = 4/94 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--- 71 +G R++ R+ G++QE+L E ++ + + E G +L +++++ + Sbjct: 28 IGFRVKQARLNAGLTQEELAEKANMSSSFISRLENGKILPSIKKLLMLADIMNVGLEDLL 87 Query: 72 -FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + ++ + +D ++ P+ L Sbjct: 88 RDFFRHTGEPSDALTEQIFYQVDMMTVPEKQYLL 121 >gi|212709326|ref|ZP_03317454.1| hypothetical protein PROVALCAL_00361 [Providencia alcalifaciens DSM 30120] gi|212688238|gb|EEB47766.1| hypothetical protein PROVALCAL_00361 [Providencia alcalifaciens DSM 30120] Length = 112 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 3/97 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK +R R G S K+ + LGI+ Q +YE G R+ L I VL+ FF Sbjct: 19 IGKELRCIRKRKGFSGAKIAKQLGISQQHYSRYECGKCRISVDTLLSILFVLDFDFGDFF 78 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + + ++ + D + YF +I Sbjct: 79 S---ELRFQLKNHQDELPDVKLNDTHKDIKNYFEKIS 112 >gi|210634335|ref|ZP_03298071.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM 13279] gi|210158862|gb|EEA89833.1| hypothetical protein COLSTE_01993 [Collinsella stercoris DSM 13279] Length = 152 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 27/55 (49%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R G++QE+L L IT Q V ++E G G ++ I+ L+ P+ D Sbjct: 10 QLRHERGLTQEELASRLYITRQAVSRWETGATEPGIDMIKLIARELDVPVMRLLD 64 >gi|325840355|ref|ZP_08167002.1| transcriptional regulator, AbrB family [Turicibacter sp. HGF1] gi|325490340|gb|EGC92667.1| transcriptional regulator, AbrB family [Turicibacter sp. HGF1] Length = 143 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 26/79 (32%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R R I +QE + E L ++ Q + K+E G L S++ + Sbjct: 1 MISMNLRRLRKIHQYTQENVAEKLNVSRQSIAKWESGETTPDLEHLLKFSKLYNVSLDNL 60 Query: 74 FDVSPTVCSDISSEENNVM 92 S + Sbjct: 61 VHHSEDHSGVSIPPKGKHF 79 >gi|311279701|ref|YP_003941932.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308748896|gb|ADO48648.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 180 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 36/93 (38%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++ ++ R G S +L E G++ + + E+ + + L I+ L P Sbjct: 3 IAQHLAVTLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 S F + + ++ ++ P +L Sbjct: 63 SLFITPPESEAAAYDPQQQAMVVTPLFPWDAEL 95 >gi|296330586|ref|ZP_06873064.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674634|ref|YP_003866306.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152268|gb|EFG93139.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412878|gb|ADM37997.1| putative transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] Length = 132 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 51/130 (39%), Gaps = 3/130 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G+ IR R + +++ E +GIT + + E+ + + ++ I++ L S Sbjct: 3 NMKMGEAIRRIRKEKKKTLDEVAEAVGITHSYLSRIERNLQQPSIQVIEKIADYLGVHKS 62 Query: 72 FFFDVSPTVCSDISSEE---NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + F ++ E+ I L + + Q +I ++ + Sbjct: 63 YLFFDEESLKKYSEPEKQLLAQKSITIDDLKKLNIVHDNGSKITEEELQLVINYLKELRE 122 Query: 129 SEKKYRTIEE 138 ++++ + Sbjct: 123 LKERHLKDLD 132 >gi|323342462|ref|ZP_08082694.1| cro/CI family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463574|gb|EFY08768.1| cro/CI family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 177 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 37/85 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKR++ R G++ E+L +T + + E + + L I E L + +S Sbjct: 1 MEIGKRLKQLRTKNGLTLEELASRSELTKGFLSQLENDLTSPSIATLNDIVEALGTNLSV 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 FF ++++ + + + Sbjct: 61 FFKEESAEQVVFTADDYFIDEREDS 85 >gi|258626503|ref|ZP_05721343.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM603] gi|258581214|gb|EEW06123.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM603] Length = 180 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 37/84 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 9 QIANQLKTLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 F P + S S ++ + T Sbjct: 69 FANDPQLLSSERSFPDDPNMKVHT 92 >gi|229488917|ref|ZP_04382783.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229324421|gb|EEN90176.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length = 62 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 25/59 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ R G+SQ+ + LGIT Q V EKG S I+E + + F Sbjct: 3 NNLQELRTAAGLSQQACADALGITRQTVISIEKGHFDPRLSLAFRIAEYFDKRVDDIFS 61 >gi|227486486|ref|ZP_03916802.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227235534|gb|EEI85549.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 77 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R LG+SQ +LG+ +GI+ + K E G I+ L I FD+ Sbjct: 3 NRIEKYRKPLGLSQHRLGKKVGISRTSINKIETGKTIPSLKTANDIANALGVCIYQIFDL 62 Query: 77 SPTV 80 T Sbjct: 63 DGTG 66 >gi|255655505|ref|ZP_05400914.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] Length = 194 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++G +I+ R M+ + + E ++ + + E+G+ V L I+ VL+ + Sbjct: 1 MNKDIGAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 ++FF + + + + + + + ++IE++ S S E Sbjct: 61 TYFFMKPKEHKRAVLRSYEKEVFDVENSTFI-HYHLSSSLKEKTMLPRLIEILPSKSSEE 119 >gi|153811887|ref|ZP_01964555.1| hypothetical protein RUMOBE_02280 [Ruminococcus obeum ATCC 29174] gi|149832021|gb|EDM87106.1| hypothetical protein RUMOBE_02280 [Ruminococcus obeum ATCC 29174] Length = 122 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 8/121 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G+ QE L LGIT Q + KYE+ V + L+ I+ + + Sbjct: 3 SRIKQLREKRGLIQEILAAELGITQQMLSKYERDVTFIKVDILKKIAVYFNVTTDYLLGL 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVRSIVSSEKKYR 134 S + + + + L + +D D ++ II++++ + EK+ R Sbjct: 63 SEVKR----DLQGQMKVNETLDEYYDLVEIYKNLDKYDQEMIWSIIQIIKKL--DEKRKR 116 Query: 135 T 135 Sbjct: 117 E 117 >gi|29377033|ref|NP_816187.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|29344499|gb|AAO82257.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] Length = 126 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 46/121 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R G+ Q +L E L + + YE + ++ I+E ++ D+ Sbjct: 6 KLKQLRTKKGIKQSELAEILHLRQSSISDYENNRSTPNPETIKKIAEYFNVSANYLLDIP 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 + + S ++ + D L ID+ R I + +I + + + + Sbjct: 66 DKNDTKLDSTIKETIEELKNEDTLLFMGKNGDIDEETARLLKIAMKNAIKTVDDMTKKTK 125 Query: 138 E 138 E Sbjct: 126 E 126 >gi|331091384|ref|ZP_08340223.1| hypothetical protein HMPREF9477_00866 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404248|gb|EGG83795.1| hypothetical protein HMPREF9477_00866 [Lachnospiraceae bacterium 2_1_46FAA] Length = 63 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR RR LG+SQ +L + G++ Q V E + ++++ L++ + F Sbjct: 5 IRNRRKELGLSQVELAKKCGVSRQTVNAIENNKYDPTLTLAFNLAKELKTTVDELF 60 >gi|303246038|ref|ZP_07332319.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492434|gb|EFL52305.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 5/99 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+IR R M+QEKL E G++ Q + + E+G + ++ ++ P++ F+ Sbjct: 9 GKKIRTIRRNRDMTQEKLAELSGLSLQYIGEIERGRRNPSLTSVETLAAAFGIPLAELFN 68 Query: 76 VS-----PTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + P I + + D + + F + Sbjct: 69 LDEFKLTPEDLRRILARQIEDADEERLRLFFNVAQAFFR 107 >gi|294813544|ref|ZP_06772187.1| Helix-turn-helix domain protein [Streptomyces clavuligerus ATCC 27064] gi|326442049|ref|ZP_08216783.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294326143|gb|EFG07786.1| Helix-turn-helix domain protein [Streptomyces clavuligerus ATCC 27064] Length = 244 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R++ R G++ L E GI+ + + E G R L IS+ + P+ Sbjct: 40 EVGPRLKRLRAERGITLAALAETTGISKSTLSRLESGGRRPSLELLLPISQAYQVPLDEL 99 >gi|270261480|ref|ZP_06189753.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044964|gb|EFA18055.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 185 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 5/117 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V + GKR+ R LG+SQ + E G+T + E+ S LQ + V Sbjct: 2 SDVSLAPGKRLSQIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGL 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 +S FF ++ + I + I + + + ++ + Sbjct: 62 SLSAFFAEPEKPDEPRIVIDHEDLIEIGSQGV-----SMKLIHNGDPNRTLAMMIET 113 >gi|222150964|ref|YP_002560117.1| hypothetical protein MCCL_0714 [Macrococcus caseolyticus JCSC5402] gi|222120086|dbj|BAH17421.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 180 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 32/64 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I+ R ++QE+LGE ++ + + E+ + +I EVL S Sbjct: 1 MDIGKKIKDLRRQKNLTQEELGERTDLSKGYISQLERNLCSPSMETFFNILEVLGSKPKD 60 Query: 73 FFDV 76 FF Sbjct: 61 FFSE 64 >gi|209544910|ref|YP_002277139.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209532587|gb|ACI52524.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 72 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 23/66 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ R G++QE++ G + Q + E+G L +++ L Sbjct: 7 VGRNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALGVSHVELV 66 Query: 75 DVSPTV 80 Sbjct: 67 SPEDGS 72 >gi|127513488|ref|YP_001094685.1| XRE family transcriptional regulator [Shewanella loihica PV-4] gi|126638783|gb|ABO24426.1| transcriptional regulator, XRE family [Shewanella loihica PV-4] Length = 510 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 7/74 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A L I+ V Sbjct: 13 FLGTKIRNLRKRNNLTMEDLSARCVRVDADSAPSVSYLSMIERGKRVPSAGMLAVIAAVF 72 Query: 67 ESPISFFFDVSPTV 80 + + +F D +P Sbjct: 73 QKEVDWFLDDAPEE 86 >gi|307354843|ref|YP_003895894.1| XRE family transcriptional regulator [Methanoplanus petrolearius DSM 11571] gi|307158076|gb|ADN37456.1| transcriptional regulator, XRE family [Methanoplanus petrolearius DSM 11571] Length = 77 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 27/75 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G++Q++L E + ++ + + EKG ++ I F Sbjct: 3 NRIKELRNERGVTQQELAEKVDVSSRTIISLEKGQYNPSVLLAHKLAVFFNCAIEEVFIF 62 Query: 77 SPTVCSDISSEENNV 91 ++ + Sbjct: 63 GKEDGIRGDADNSEQ 77 >gi|282876544|ref|ZP_06285409.1| DNA-binding protein [Staphylococcus epidermidis SK135] gi|281294632|gb|EFA87161.1| DNA-binding protein [Staphylococcus epidermidis SK135] Length = 96 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 37/92 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++R R I ++QE+L E ++ + + E ++ EVL + S Sbjct: 1 MDIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF +E + D L+L Sbjct: 61 FFKEPSDEKVLYKKKEQTIYDEYDKRLYLELA 92 >gi|256784548|ref|ZP_05522979.1| hypothetical protein SlivT_08668 [Streptomyces lividans TK24] gi|289768432|ref|ZP_06527810.1| XRE family transcriptional regulator [Streptomyces lividans TK24] gi|289698631|gb|EFD66060.1| XRE family transcriptional regulator [Streptomyces lividans TK24] Length = 290 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 10/132 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R M Q +LGE +G++ V ++E G + +L I+ L+ P+ F Sbjct: 8 GSLVRAVRRRRDMHQRQLGELVGVSGATVARWESGKDFPKGEKLPAIATALDEPLDELFP 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFI---QIDDVKVRQKIIELVRSIVSSEKK 132 + +S + ++ + R+ V+ + ++ Sbjct: 68 HEGPPDLQLLR----CDAGLSVAEATEIIGASRGPVSNAESGRRRLNASYVKPLAAA--- 120 Query: 133 YRTIEEECMVEQ 144 Y EEE + Q Sbjct: 121 YGVTEEELLAAQ 132 >gi|229027735|ref|ZP_04183918.1| transcriptional regulator, XRE [Bacillus cereus AH1272] gi|228733571|gb|EEL84372.1| transcriptional regulator, XRE [Bacillus cereus AH1272] Length = 102 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 3/95 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R G++Q++L + L ++ + YE+ + + L I++ F Sbjct: 5 GNIIRDLRKQKGITQKELAQSLQLSESTIGMYERNERQPDYNTLIRIADYFNVSTDFLLG 64 Query: 76 VS---PTVCSDISSEENNVMDFISTPDGLQLNRYF 107 ++ ++ ++ + + F Sbjct: 65 RDFNVKEDRNNKELDQWLNDIKLAPSQKREELKRF 99 >gi|190572369|ref|YP_001970214.1| putative phage-like protein [Stenotrophomonas maltophilia K279a] gi|190010291|emb|CAQ43899.1| putative phage-related protein [Stenotrophomonas maltophilia K279a] Length = 143 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 1/102 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R++ R LG++QE +G G+ + +E+ + G ++ L +++ Sbjct: 1 MSVGNRLKEERKRLGLTQEAIGLACGVAKRTQILFEQDAHVPG-GAYFAAADELGMDVAY 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 S+ ++ N S + + Sbjct: 60 VLVGRRDRLSESDADLLNAWRTASPSARVAAMAALTGVAPAA 101 >gi|167569121|ref|ZP_02361995.1| DNA-binding protein [Burkholderia oklahomensis C6786] Length = 186 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 42/106 (39%), Gaps = 4/106 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F S Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGISVPSIAVALKLSKALQVDVERLFSDS 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + ++ G R + I +K++ V Sbjct: 64 HDRELITVTRASER----TSMGGGTSARTYESIAAGVAPKKLLPFV 105 >gi|166032956|ref|ZP_02235785.1| hypothetical protein DORFOR_02677 [Dorea formicigenerans ATCC 27755] gi|166027313|gb|EDR46070.1| hypothetical protein DORFOR_02677 [Dorea formicigenerans ATCC 27755] Length = 104 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 40/99 (40%), Gaps = 1/99 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+RI+ R ++QE+L + ++ V E+G+ I+ L+ Sbjct: 4 KAVGQRIKAAREAKNLTQEELAGLVNLSPTHVSVIERGLKVTKLDTFIAIANALDVSADT 63 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 DV S +++E + +++ + ++ + Sbjct: 64 LLIDVVTHSVSGVTNELSEMIEKLPKEKQQRIINAVRAL 102 >gi|86142246|ref|ZP_01060756.1| hypothetical protein MED217_11389 [Leeuwenhoekiella blandensis MED217] gi|85830998|gb|EAQ49455.1| hypothetical protein MED217_11389 [Leeuwenhoekiella blandensis MED217] Length = 251 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IR R + +SQ+ E + + YE+G + + I+ PI Sbjct: 5 GKNIRKIRSVKTLSQQAFAELFDLKRGTLGAYEEGRSEPKIETIIKIANYFSIPIDDLLT 64 Query: 76 VS 77 Sbjct: 65 RE 66 >gi|294633421|ref|ZP_06711980.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] gi|292831202|gb|EFF89552.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces sp. e14] Length = 181 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 26/70 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+R+R R G+S +L G+ + + E G L ++ L P+S Sbjct: 6 EVGRRLRELRTARGLSLSELARRSGVGKGTLSELESGTRNPTLDTLYALTTALNRPLSAV 65 Query: 74 FDVSPTVCSD 83 + Sbjct: 66 LADDAPPHGE 75 >gi|256849649|ref|ZP_05555081.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|256713765|gb|EEU28754.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] Length = 187 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +R R LG++Q+++ + IT K EKG NR+ L I + +S+ Sbjct: 1 MDIGTALRHLRDDLGLTQKQMIQGTKITVSHYSKLEKGQNRIFIENLVEILKQRNISLSY 60 Query: 73 F----FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY---FIQIDDVKVRQK---IIEL 122 F + + SE N+ + + + + ++R + I+++ Sbjct: 61 FVDHYLNDENSEKEVNYSEILNIAFYEKDKIAAEEIKRQIFSDKSSSNELRDRATLIVDM 120 Query: 123 V 123 + Sbjct: 121 I 121 >gi|256397796|ref|YP_003119360.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256364022|gb|ACU77519.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 223 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 9/95 (9%) Query: 8 PNPVDIN---------VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 P +D + VG R++ R ++ L + GI+ + + E G+ R + Sbjct: 26 PEDLDNHEEIDRTLDAVGPRLKRLRQRSDITLTDLAKKTGISASTLSRLEAGLRRPTLEQ 85 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 L ++ + D PT + D Sbjct: 86 LLPLARAHGVTLDELVDAPPTGDPRLHLRPIACGD 120 >gi|229490099|ref|ZP_04383947.1| regulatory protein [Rhodococcus erythropolis SK121] gi|229322975|gb|EEN88748.1| regulatory protein [Rhodococcus erythropolis SK121] Length = 203 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R G++ E L E G++ + + E G R L ++ + Sbjct: 15 IGPRLRTLRRDRGLTLEGLSEATGVSVSALSRLESGKRRPTLDLLLPLARAHRVALDQL 73 >gi|229136572|ref|ZP_04265260.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] gi|228646884|gb|EEL03031.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] Length = 65 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R+ G++Q++L + + +T Q + E HI++ L+ + F Sbjct: 4 SKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDESLDKLFWE 63 Query: 77 S 77 Sbjct: 64 E 64 >gi|228936772|ref|ZP_04099562.1| hypothetical protein bthur0009_52060 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229199177|ref|ZP_04325858.1| hypothetical protein bcere0001_46890 [Bacillus cereus m1293] gi|228584283|gb|EEK42420.1| hypothetical protein bcere0001_46890 [Bacillus cereus m1293] gi|228822891|gb|EEM68733.1| hypothetical protein bthur0009_52060 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 79 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVE 65 Query: 72 FFFDVSPTVCSDI 84 F + Sbjct: 66 EIFTLVEGEDDGE 78 >gi|227551898|ref|ZP_03981947.1| DNA-binding protein [Enterococcus faecium TX1330] gi|257895511|ref|ZP_05675164.1| transcriptional regulator [Enterococcus faecium Com12] gi|227178970|gb|EEI59942.1| DNA-binding protein [Enterococcus faecium TX1330] gi|257832076|gb|EEV58497.1| transcriptional regulator [Enterococcus faecium Com12] Length = 370 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 31/88 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K + R G++QE L E +G+T V K+E G + L ++ + + Sbjct: 8 KNVANLRKKKGVTQEILAEFIGVTKASVSKWETGQSMPDVLILPKLASFFDVSVDELLGY 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN 104 P + + + + + Sbjct: 68 HPQLTKEQIRHFYQQWTTAFSEEPFEYV 95 >gi|150403502|ref|YP_001330796.1| helix-turn-helix domain-containing protein [Methanococcus maripaludis C7] gi|150034532|gb|ABR66645.1| helix-turn-helix domain protein [Methanococcus maripaludis C7] Length = 192 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG +I+ R MS E+L + + ++ E G + L I+ L + F Sbjct: 6 HVGIKIKQTRERQNMSIEELAKASNSSVNLIESLENGDLVPSLTPLFKIARALGVRLGTF 65 Query: 74 FDVSPTVCSDISSE 87 D +P ++ Sbjct: 66 LDDAPQSGPVVTKS 79 >gi|86360696|ref|YP_472584.1| MerR family transcriptional regulator [Rhizobium etli CFN 42] gi|86284798|gb|ABC93857.1| probable transcriptional regulator protein, MerR family [Rhizobium etli CFN 42] Length = 190 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +R R LG++ L GI+ + K E G + LQ +S L P++ Sbjct: 1 MAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGVPLTA 60 Query: 73 FFDVSPTVCSDI 84 FF + + Sbjct: 61 FFRRYEEPRNAV 72 >gi|30261146|ref|NP_843523.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|30254760|gb|AAP25009.1| DNA-binding protein [Bacillus anthracis str. Ames] Length = 73 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R SQ L E + ++ Q V K+E G N + H+S++ I Sbjct: 5 ERLKEEREKRNWSQSDLAEKIHVSRQSVSKWETGKNYPSIEIIIHLSDLFGITIDELLRT 64 Query: 77 SPTVCS 82 + Sbjct: 65 DEELTQ 70 >gi|28211116|ref|NP_782060.1| putative transcriptional regulatory protein [Clostridium tetani E88] gi|28203556|gb|AAO35997.1| putative transcriptional regulatory protein [Clostridium tetani E88] Length = 235 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R +S +L E GI+ + + EKG + L I++ L+ P Sbjct: 55 INSIIAENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTNPTINTLWKIAKGLKVPY 114 Query: 71 SFFFD 75 + + Sbjct: 115 TSLLE 119 >gi|81427688|ref|YP_394685.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609327|emb|CAI54373.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 189 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 31/69 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR+ L ++Q+ + + L + Q + +E G N L IS + + + Sbjct: 6 LKKRRIDLHLTQQAVADQLHTSRQTISNWENGKNYPDVPMLVAISNLYDLSLDDMLKQDT 65 Query: 79 TVCSDISSE 87 + ++++ Sbjct: 66 NYLNKVAND 74 >gi|332666442|ref|YP_004449230.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332335256|gb|AEE52357.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 190 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++IR R GM+ +++ + IT + + E L +IS L P++ Sbjct: 9 VGRKIRQLRKERGMNLQEVSDKSDITAGLLSRIENFRTLPSLPVLHNISMALNVPLAELV 68 Query: 75 DVSPTVCSDI 84 D+ Sbjct: 69 DLVGNNGESN 78 >gi|328882934|emb|CCA56173.1| hypothetical protein SVEN_2887 [Streptomyces venezuelae ATCC 10712] Length = 62 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R RM ++Q+++GE G+ +Q+ E G + +++ + P F+ Sbjct: 3 GARVRDARMYANLTQQRVGELSGLARATIQEIESGRAAPTVDTVLLLADAIGVPPGVLFE 62 >gi|319745857|gb|EFV98148.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 153 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 5/88 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +V +K+ N D I+ R ++Q++L L I + +E G N+ ++ Sbjct: 9 IVKEQKMANLSD-----NIKYFRKQNKLTQKELARKLKIAPTAISAWEVGRNKPLMDNIE 63 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEE 88 ++ + P S + +S E Sbjct: 64 QMASIFGIPKSKLLGDEIYKIQETASPE 91 >gi|315222885|ref|ZP_07864765.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315188024|gb|EFU21759.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 116 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 13/109 (11%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRIRL R+ GM+QE+L E + V K E V + L+ + + LE I F Sbjct: 15 YIGKRIRLLRLERGMTQEQLEERADLGTNYVYKLEHLAPNVKINTLERVMQALEVDIETF 74 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 FD++ T QL ++ + K ++ I + Sbjct: 75 FDMAVTDKEKEDDLT-------------QLVQHLKSLPQEKQKKVIDAI 110 >gi|317131912|ref|YP_004091226.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469891|gb|ADU26495.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 73 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R ++Q ++ L I YE G + L I+++ ++ + + Sbjct: 3 ERIRNMREDRDLTQTQMASYLNIHQTTYSDYEIGNLNIPIPVLMKIADLFDTSVDYLVGR 62 Query: 77 SPTV 80 + Sbjct: 63 TDER 66 >gi|270291339|ref|ZP_06197561.1| transcriptional regulator [Pediococcus acidilactici 7_4] gi|304385092|ref|ZP_07367438.1| possible transcriptional regulator [Pediococcus acidilactici DSM 20284] gi|270280185|gb|EFA26021.1| transcriptional regulator [Pediococcus acidilactici 7_4] gi|304329286|gb|EFL96506.1| possible transcriptional regulator [Pediococcus acidilactici DSM 20284] Length = 66 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+++ R+ +SQ +L +G+T Q + E G I + L+ + F Sbjct: 4 QRLKIARLEKDLSQAELANLIGVTRQTIGLIEAGNYNPTLKLCVAICQALDKTLDDLFWE 63 Query: 77 SPT 79 P+ Sbjct: 64 DPS 66 >gi|229145898|ref|ZP_04274277.1| hypothetical protein bcere0012_30470 [Bacillus cereus BDRD-ST24] gi|296503830|ref|YP_003665530.1| transcriptional repressor [Bacillus thuringiensis BMB171] gi|228637506|gb|EEK93957.1| hypothetical protein bcere0012_30470 [Bacillus cereus BDRD-ST24] gi|296324882|gb|ADH07810.1| transcriptional repressor [Bacillus thuringiensis BMB171] Length = 374 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ--------LNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + + + + + ++ I+ + Sbjct: 64 LISYTPQMEQEDIKNLYHRLAEAFSEEPFDEVMMECRGIIKKYYSCFPLLIQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDTDRGIEILEEAM 141 >gi|229170545|ref|ZP_04298193.1| Transcriptional regulator [Bacillus cereus AH621] gi|228612894|gb|EEK70071.1| Transcriptional regulator [Bacillus cereus AH621] Length = 65 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R+ G++Q++L + + +T Q + E HI++ L+ + F Sbjct: 4 SKIKIARVEKGLTQQELADIVNVTRQTISLIESNKYNPSLKLCIHIAKTLDKSLDKLFWE 63 Query: 77 S 77 Sbjct: 64 E 64 >gi|255519174|ref|ZP_05386850.1| putative prophage repressor [Clostridium difficile QCD-97b34] Length = 109 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 6/108 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R I +SQ++ GE L ++ + EKGV V + I + + Sbjct: 3 NRIKELRQIKHLSQKEFGETLNLSQNHISSIEKGVRTVTDRTINDICDKYNVNKKWLLTG 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + D+ N + + + R F ++ D + R+ ++ L++ Sbjct: 63 QGEIFKDVLEGFN-----LDNSEVEEFIRLFYEV-DSETREYVLGLMQ 104 >gi|153941295|ref|YP_001390879.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152937191|gb|ABS42689.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295318944|gb|ADF99321.1| putative DNA-binding protein [Clostridium botulinum F str. 230613] Length = 370 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R ++QE+L +G++ V K+E G + + L I+ I Sbjct: 6 IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIAAFFNVTIDTLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + + + + N + + + Sbjct: 66 NFKIELSDEEVMDIFNECEKLFSN 89 >gi|110637900|ref|YP_678107.1| hypothetical protein CHU_1496 [Cytophaga hutchinsonii ATCC 33406] gi|110280581|gb|ABG58767.1| hypothetical protein CHU_1496 [Cytophaga hutchinsonii ATCC 33406] Length = 79 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 2/76 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMS-QEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K VGK++ R G + QE GI Q +YE G + +L Sbjct: 1 MTDEDKELEGFYKKVGKKLTDLRKAAGYTNQESFAHDAGIARGQYGRYENGS-NITIGKL 59 Query: 60 QHISEVLESPISFFFD 75 I + + FF+ Sbjct: 60 YKILKYHKISFEDFFN 75 >gi|326423656|ref|NP_759095.2| putative transcriptional regulator [Vibrio vulnificus CMCP6] gi|319999008|gb|AAO08622.2| Predicted transcriptional regulator [Vibrio vulnificus CMCP6] Length = 108 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 48/111 (43%), Gaps = 13/111 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFFFD 75 +R++ R G+S+E++ + + + ++ +E + ++ + +L +S++ Sbjct: 9 QRLKQARKAAGLSREQVAKAMHKSPHTIKSWETTSRQPRTLREVERLCSILGITVSWYLT 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P V + SE +L F + D + + ++EL++ + Sbjct: 69 GQPPVKPIMPSEREQ-----------ELLALFSGLSDEQ-QSAVLELIKVM 107 >gi|315033825|gb|EFT45757.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0017] Length = 65 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 28/58 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++R LG +QE + +GI YE+G + ++++L + FF+ Sbjct: 8 LKIKREELGYTQESFAKKVGIAKTTYSSYEQGHRNPTVQTAKKMAKILNVSWTLFFEE 65 >gi|325674855|ref|ZP_08154542.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325554441|gb|EGD24116.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 196 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 27/81 (33%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + + VG R+R R G + L GI+ + + E G + L Sbjct: 1 MDDADDMDRILDAVGPRLRALRQQRGTTLSDLAADTGISVSTLSRLEAGQRKPNLELLLP 60 Query: 62 ISEVLESPISFFFDVSPTVCS 82 ++ P+ T Sbjct: 61 LARAYGVPLDELVGAPETGDP 81 >gi|222444732|ref|ZP_03607247.1| hypothetical protein METSMIALI_00345 [Methanobrevibacter smithii DSM 2375] gi|288869756|ref|ZP_05976143.2| DNA-binding protein [Methanobrevibacter smithii DSM 2374] gi|222434297|gb|EEE41462.1| hypothetical protein METSMIALI_00345 [Methanobrevibacter smithii DSM 2375] gi|288861510|gb|EFC93808.1| DNA-binding protein [Methanobrevibacter smithii DSM 2374] Length = 196 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 2/78 (2%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +K+PN +G++I+ + +S ++L + + V+K G + L I+ Sbjct: 2 EKMPNK--NKIGEKIKTLMEVRNVSLDELANDSDVNIELVEKILNGEIIPSLTPLTKIAR 59 Query: 65 VLESPISFFFDVSPTVCS 82 VL I F D Sbjct: 60 VLGVRIGTFIDDDEQTGP 77 >gi|197303443|ref|ZP_03168482.1| hypothetical protein RUMLAC_02165 [Ruminococcus lactaris ATCC 29176] gi|197297441|gb|EDY32002.1| hypothetical protein RUMLAC_02165 [Ruminococcus lactaris ATCC 29176] Length = 368 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 46/118 (38%), Gaps = 8/118 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K++ R ++QE+L +G++ V K+E GV+ + L ++ I Sbjct: 4 INIAKQLLAARHEKKITQEELASYVGVSKAAVSKWESGVSFPDITLLPKLATYFNVSIDE 63 Query: 73 FFDVSPTVCSDISSEE--------NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 P + + E N ++ + +L + + ++ I+ L Sbjct: 64 LIGYEPQLTREQIKELYSQLKNIFANEKFEVAMAECRELEKKYYSCFPFLLQMAILYL 121 >gi|167588868|ref|ZP_02381256.1| transcriptional regulator, XRE family protein [Burkholderia ubonensis Bu] Length = 177 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 28/89 (31%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R L ++ + GI+ + + E+G + L I+ L I F Sbjct: 2 GNRIRTLRRQLKLTLDVTAASAGISKPFLSQIERGRAMPSIASLVGIARALGVTIDHFVG 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLN 104 + E + L Sbjct: 62 APGDAPTACRCEAPPQPGAEAIAHALAQV 90 >gi|154496785|ref|ZP_02035481.1| hypothetical protein BACCAP_01078 [Bacteroides capillosus ATCC 29799] gi|150274037|gb|EDN01137.1| hypothetical protein BACCAP_01078 [Bacteroides capillosus ATCC 29799] Length = 94 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G I+ R G SQ L + L +T V +E G++ + I+++ + Sbjct: 1 MIGDTIKRLREDAGFSQSALAKKLNVTRSAVNAWEMGLSVPTTQYVVDIAKLFRVSADY 59 >gi|120404243|ref|YP_954072.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119957061|gb|ABM14066.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 104 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 32/75 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R+ G++QE L G+T + E G + RL I++ L P S Sbjct: 23 VGDNIRRLRISCGLTQEALALQSGVTRNVLLAVEHGRRGLLYERLFDIADALGVPASRLL 82 Query: 75 DVSPTVCSDISSEEN 89 D + + ++ Sbjct: 83 DSHNESGEGLRTADS 97 >gi|260683110|ref|YP_003214395.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686708|ref|YP_003217841.1| putative transcriptional regulator [Clostridium difficile R20291] gi|260209273|emb|CBA62609.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212724|emb|CBE03830.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 196 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++G +I+ R M+ + + E ++ + + E+G+ V L I+ VL+ + Sbjct: 3 LNKDIGAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 ++FF + + + + + + + ++IE++ S S E Sbjct: 63 TYFFMKPKEHKRAVLRSYEKEVFDVENSTFI-HYHLSSSLKEKTMLPRLIEILPSKSSEE 121 >gi|42784324|ref|NP_981571.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42740255|gb|AAS44179.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 66 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 5 NKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|29347394|ref|NP_810897.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298385147|ref|ZP_06994706.1| hypothetical protein HMPREF9007_01800 [Bacteroides sp. 1_1_14] gi|29339294|gb|AAO77091.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|298262291|gb|EFI05156.1| hypothetical protein HMPREF9007_01800 [Bacteroides sp. 1_1_14] Length = 73 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + +I++ R + +SQE+L +G+T + + E G I+ P+ Sbjct: 3 NKELLNKIKVYRAMKNISQEELAVAIGVTRKTINTVETGKFIPSTVLALRIARYFGVPVE 62 Query: 72 FFFDVSPTVC 81 F ++ Sbjct: 63 EIFVLNDEAS 72 >gi|325262256|ref|ZP_08128994.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324033710|gb|EGB94987.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 197 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK I R GM+Q+ L + + I+ + + K+E+GV S L+ +S++LE + Sbjct: 6 VGKLILTLRQEKGMTQKALADAMNISDRTISKWERGVGCPDVSLLRGLSDILEVDVEKIL 65 Query: 75 DVS 77 Sbjct: 66 SGD 68 >gi|321156793|emb|CBW38777.1| Putative helix turn helix DNA binding protein [Streptococcus pneumoniae] Length = 254 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ +R G+SQ +L LGI+ +E G + + L +SE+L +F Sbjct: 33 KLKEKRESQGLSQSQLASSLGISRASYFNWESGKTKPNQNNLSKLSEILNVDPRYF 88 >gi|322390898|ref|ZP_08064406.1| hypothetical protein HMPREF8577_1876 [Streptococcus parasanguinis ATCC 903] gi|321142411|gb|EFX37881.1| hypothetical protein HMPREF8577_1876 [Streptococcus parasanguinis ATCC 903] Length = 108 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 41/101 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + KRIR+ R GM+QE+L E + K E + S L+ I E L + Sbjct: 6 KYISKRIRILRTQSGMTQEQLEEKADLGTNYAYKLENLEPNIKISTLEKIIEALNVDLQT 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 FFD++ S ++ + + + ++ I + Sbjct: 66 FFDLTLKEESTDLAQLIDTIKSLPEYKQNKVISAINTIINE 106 >gi|183217354|gb|ACC59273.1| UV resistance protein UmuD [Streptococcus pneumoniae] Length = 227 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ +R G+SQ +L LGI+ +E G + + L +SE+L +F Sbjct: 6 KLKEKRESQGLSQSQLASSLGISRASYFNWESGKTKPNQNNLSKLSEILNVDPRYF 61 >gi|312138107|ref|YP_004005443.1| transcriptional regulator [Rhodococcus equi 103S] gi|311887446|emb|CBH46758.1| putative transcriptional regulator [Rhodococcus equi 103S] Length = 182 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 11/109 (10%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E L E G+T + K E+G+N + I+ L++ +S F +P Sbjct: 5 LRSHRRRAGLTLEALAEDTGLTKSYLSKVERGINTPSIAVALKIARALDADVSQLFSDTP 64 Query: 79 -----------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + +++ V D I+T + + FI + R Sbjct: 65 DNSVMAIERHAERAQVDADDDSAVYDAIATRMIGKAMQPFIVHPTTQPR 113 >gi|312888716|ref|ZP_07748283.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311298819|gb|EFQ75921.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 191 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 41/117 (35%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V I + RI+ RR ++ ++L + ++ + + E L I + L Sbjct: 1 MEQDVLIQISHRIKERRREKNLTIQELADKASVSKGLISQIENSRTIPSLMVLIEIIKGL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + ++ FF + ++ + + +I + +++V Sbjct: 61 DVDLNKFFKDISFPSGQALAVIKRKEEYEPFEKESAIGFRYHRIFTQNINPSTVDIV 117 >gi|307243365|ref|ZP_07525525.1| toxin-antitoxin system, antitoxin component, Xre family [Peptostreptococcus stomatis DSM 17678] gi|306493257|gb|EFM65250.1| toxin-antitoxin system, antitoxin component, Xre family [Peptostreptococcus stomatis DSM 17678] Length = 104 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 1/98 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+L R M+Q L L +T + KYE G+ L+ +S++ E + + Sbjct: 4 LGNRIKLLRKEFNMTQTDLANRLNLTKSNISKYENGIVEPSLDILRSMSDLFEVSVDYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFIST-PDGLQLNRYFIQID 111 + + + D L+ + F+++ Sbjct: 64 GRTNIRNHPETFAAHTDEDMSDEAKAELENFKEFLKMK 101 >gi|288800276|ref|ZP_06405734.1| transcriptional regulator [Prevotella sp. oral taxon 299 str. F0039] gi|288332489|gb|EFC70969.1| transcriptional regulator [Prevotella sp. oral taxon 299 str. F0039] Length = 184 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R++ R I +S E++ + I+ + K E G RL I++ + Sbjct: 6 KQIGERLKGLREIFNISPEEIAQLCDISLEHYFKIEAGEADPSFYRLSKIAKRYNIGVDA 65 Query: 73 FFDVSPTVCSD 83 S Sbjct: 66 LLFGEEAHMSS 76 >gi|254785721|ref|YP_003073150.1| DNA-binding protein [Teredinibacter turnerae T7901] gi|237684567|gb|ACR11831.1| DNA-binding protein [Teredinibacter turnerae T7901] Length = 200 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 32/78 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+R++ R G+SQ +L +T + E+G + L+ + + + Sbjct: 19 NNRLGERLQAVRKQHGLSQRELARRAEVTNSTLSMIEQGKVSPSVASLEKVLSAIPMTLQ 78 Query: 72 FFFDVSPTVCSDISSEEN 89 FF + + I + Sbjct: 79 EFFSDTLEILPPIYRAAD 96 >gi|258517274|ref|YP_003193496.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780979|gb|ACV64873.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 170 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 40/97 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R++ R LG+SQ+ GECLGI+ + + + EK ++H+ + S+ Sbjct: 1 MYVGVRVQKLRKHLGLSQKDFGECLGISQKHISQIEKDTREPSEQLIKHLCLRYNTSESW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + N+ + + ++ Sbjct: 61 IKTGEGEMFTSPEESLKNIKTRLGERVFMDAINNIMK 97 >gi|228968265|ref|ZP_04129263.1| hypothetical protein bthur0004_50440 [Bacillus thuringiensis serovar sotto str. T04001] gi|228791438|gb|EEM39042.1| hypothetical protein bthur0004_50440 [Bacillus thuringiensis serovar sotto str. T04001] Length = 65 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 5 NKIKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEGIFTL 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|282599859|ref|ZP_05972144.2| MrfJ protein [Providencia rustigianii DSM 4541] gi|282567409|gb|EFB72944.1| MrfJ protein [Providencia rustigianii DSM 4541] Length = 106 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 44/95 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VG RIR R MS ++L + LGI+ Q ++E G R+ + ISE+L Sbjct: 1 MQKNISRIVGARIRTLRKDRRMSIQQLSKKLGISQQHQSRHELGDMRIHVDTIYSISEIL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 E I+ + S+I + + + I + L Sbjct: 61 ELDINELISDFTSSNSNIITNDKRDREKILQAEIL 95 >gi|168217416|ref|ZP_02643041.1| transcriptional regulator [Clostridium perfringens NCTC 8239] gi|182380504|gb|EDT77983.1| transcriptional regulator [Clostridium perfringens NCTC 8239] Length = 141 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 25/55 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ R +SQE+L + L I+ Q + K+E G L + ++ + Sbjct: 5 NKLKELRKEKNISQEQLAKELNISRQAISKWESGKAYPDIENLILLRKIFGVSLD 59 >gi|167749863|ref|ZP_02421990.1| hypothetical protein EUBSIR_00831 [Eubacterium siraeum DSM 15702] gi|167657175|gb|EDS01305.1| hypothetical protein EUBSIR_00831 [Eubacterium siraeum DSM 15702] gi|291531021|emb|CBK96606.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 221 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R G++Q+++ LGI + YEKG G L ++ + SP Sbjct: 12 LRKERGLTQKQVAADLGIAQALLSHYEKGKRECGLEFLVKAADYYNVSTDYLLGRSPVSN 71 Query: 82 SDISSEEN 89 I +E + Sbjct: 72 GGIITESD 79 >gi|86748264|ref|YP_484760.1| transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86571292|gb|ABD05849.1| transcriptional regulator [Rhodopseudomonas palustris HaA2] Length = 232 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 28/73 (38%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ +G +IR R +S L I+ + K E G S LQ I+ L P Sbjct: 46 SLERALGAKIRAIRRERDLSVSDLSSASNISAGMMSKIENGQISPSLSTLQSIAGALNVP 105 Query: 70 ISFFFDVSPTVCS 82 +S F S Sbjct: 106 LSLLFAASEQRRD 118 >gi|91978515|ref|YP_571174.1| hypothetical protein RPD_4054 [Rhodopseudomonas palustris BisB5] gi|91684971|gb|ABE41273.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB5] Length = 480 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 37/100 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R LG+SQ ++ E LGI+ + E+ V A L ++E + + Sbjct: 9 LFVGPRFRRIRQQLGLSQTQIAEGLGISPSYINLIERNQRPVTAQILLRLAETYDLDLRD 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +E + F Q R ++ Sbjct: 69 LATADEDRFFAELNEIFSDPLFRQIDLPKQELRDLAELCP 108 >gi|89893376|ref|YP_516863.1| hypothetical protein DSY0630 [Desulfitobacterium hafniense Y51] gi|219666666|ref|YP_002457101.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332824|dbj|BAE82419.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536926|gb|ACL18665.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 73 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R + M+Q ++ E L I YE G + L I+++ + I + + Sbjct: 3 ERIRNMREDMDMTQSQIAEHLNIHQTTYSDYEIGKLNIPVQVLGKIADLFGTSIDYLVNR 62 Query: 77 SP 78 + Sbjct: 63 TD 64 >gi|332882325|ref|ZP_08449953.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679709|gb|EGJ52678.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 77 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG--ASRLQHISE 64 + + VD+ V ++R +R LG+SQ L L + + + E + ++ I++ Sbjct: 1 MKSKVDLFVINKVREKRKELGISQRGLAAILECSPSFIGQVESDKFDIKYSVHQVFLIAQ 60 Query: 65 VLESPISFFF 74 + + FF Sbjct: 61 FFDCSPADFF 70 >gi|313899270|ref|ZP_07832786.1| cupin domain protein [Clostridium sp. HGF2] gi|312955950|gb|EFR37602.1| cupin domain protein [Clostridium sp. HGF2] Length = 195 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 51/123 (41%), Gaps = 4/123 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ N+G+ I+ RR M+ + + E ++ + + E+G+ + L+ +++ L + Sbjct: 5 MNKNIGELIKQRRTENKMTLKDISEATELSIGYLSQLERGLTSIAHDTLKKVAKALGVEM 64 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 ++F + T + + I ++ + + + + +LV + E Sbjct: 65 TYFMEQPKTKEKAVLRSYEREILRIEGSSIIE----YAMTNMADRGEMLPKLVEILPQKE 120 Query: 131 KKY 133 + Sbjct: 121 VEE 123 >gi|312138238|ref|YP_004005574.1| transcriptional regulator [Rhodococcus equi 103S] gi|311887577|emb|CBH46889.1| putative transcriptional regulator [Rhodococcus equi 103S] Length = 197 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 23/69 (33%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R G + L GI+ + + E G + L ++ P+ Sbjct: 14 AVGPRLRALRQQRGTTLSDLAADTGISVSTLSRLEAGQRKPNLELLLPLARAYGVPLDEL 73 Query: 74 FDVSPTVCS 82 T Sbjct: 74 VGAPETGDP 82 >gi|312792346|ref|YP_004025269.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179486|gb|ADQ39656.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 274 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 30/76 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +S+ L E LG++ Q + YE G L I+E + + + S Sbjct: 7 RLKELREEKNISRSDLAEILGVSTQTIANYENGHREPNFDTLLKIAEYFDVTVDYLVGRS 66 Query: 78 PTVCSDISSEENNVMD 93 + + + + Sbjct: 67 DYRTVEEQISKRSKFE 82 >gi|311068514|ref|YP_003973437.1| putative Xre family transcriptional regulator [Bacillus atrophaeus 1942] gi|310869031|gb|ADP32506.1| putative transcriptional regulator (Xre family); phage SPbeta [Bacillus atrophaeus 1942] Length = 108 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 28/60 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G SQ+++ + LGIT Q KYE G + L +S +L F Sbjct: 4 ERLKKCRTSKGYSQQQMADFLGITRQGYGKYETGKAEPDLTTLTKLSNILGVSTDFLLKG 63 >gi|260221082|emb|CBA29291.1| hypothetical protein Csp_A11410 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 97 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI R I ++Q + E I + E G + L IS+ L P+ Sbjct: 3 VALGLRIEENRKIQKLTQIEFAEKCNIARNYLSTIESGKANPSLAVLFTISDQLGVPLCK 62 Query: 73 FFDVSPTV 80 + Sbjct: 63 LLQEDKSA 70 >gi|257437945|ref|ZP_05613700.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257199605|gb|EEU97889.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 231 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 32/71 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+L R G++Q++ E LG++ + YEKG+ G + +++ + S Sbjct: 7 IKLLRKERGITQKQAAEDLGVSQALLSHYEKGIRECGLDFVVRVADYYNVSCDYLLGRSA 66 Query: 79 TVCSDISSEEN 89 + + ++ Sbjct: 67 ERNGMMLNADD 77 >gi|229590656|ref|YP_002872775.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|229362522|emb|CAY49429.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] Length = 193 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 43/118 (36%), Gaps = 5/118 (4%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ +D+ + I+ R+ G+S +L + G+ + + E G+ L ++ Sbjct: 10 KNNPSRIDL-LALSIKRERLAAGLSLTELAKRAGVAKSTLSQLESGIGNPSIETLWSLAM 68 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + ++ FF+ I + E + L V++ I L Sbjct: 69 AMGLQVTRFFEQPQQPLRVIRANEGMTTYAETANYAATLLAD----CQAGVQRDIYRL 122 >gi|213158984|ref|YP_002320982.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|215482031|ref|YP_002324213.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|301345648|ref|ZP_07226389.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AB056] gi|301512343|ref|ZP_07237580.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AB058] gi|301596168|ref|ZP_07241176.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AB059] gi|332851919|ref|ZP_08433805.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332868837|ref|ZP_08438430.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|213058144|gb|ACJ43046.1| transcriptional regulator, XRE family [Acinetobacter baumannii AB0057] gi|213988455|gb|ACJ58754.1| Helix-turn-helix family protein [Acinetobacter baumannii AB307-0294] gi|332729612|gb|EGJ60949.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332733090|gb|EGJ64289.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] Length = 183 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V +VG IR R +SQ+ L + G++ + + E G + ++L I+ VL Sbjct: 5 SSVLQHVGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 64 Query: 69 P 69 Sbjct: 65 D 65 >gi|169794442|ref|YP_001712235.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AYE] gi|169147369|emb|CAM85230.1| putative HTH-type transcriptional regulator [Acinetobacter baumannii AYE] Length = 210 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V +VG IR R +SQ+ L + G++ + + E G + ++L I+ VL Sbjct: 32 SSVLQHVGTNIRSLRDEHSLSQQDLADRAGVSRRTIAALETGQVNISLAKLDAIAAVLGV 91 Query: 69 P 69 Sbjct: 92 D 92 >gi|196032247|ref|ZP_03099661.1| DNA-binding protein [Bacillus cereus W] gi|228915928|ref|ZP_04079503.1| hypothetical protein bthur0012_31460 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|195994998|gb|EDX58952.1| DNA-binding protein [Bacillus cereus W] gi|228843746|gb|EEM88820.1| hypothetical protein bthur0012_31460 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 374 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 P + + + + + ++ + + + ++ I+ + Sbjct: 64 LISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMECRKIIKKYYSCFPLLIQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDTDRRIEILEEAM 141 >gi|114798978|ref|YP_761236.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114739152|gb|ABI77277.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 69 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + GKR+R R G SQE+ + G+ V E+GV S L+ +++ L+ Sbjct: 2 DIRQKFGKRLRQLREERGWSQEEFADRAGLHRTYVSAVERGVRNPTLSVLERLAKALDIK 61 Query: 70 ISFF 73 +S Sbjct: 62 LSEL 65 >gi|255030378|ref|ZP_05302329.1| transcriptional activator, Rgg/GadR/MutR family, C- domain protein [Listeria monocytogenes LO28] Length = 138 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 11/113 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R+ G++Q+++ + I+ +EKG + + S + I + + P+ FF Sbjct: 5 GELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFF- 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR--------YFIQIDDVKVRQKII 120 + +++ +DF+ + + + +VR+ I+ Sbjct: 63 -FIYRDFSSTEDDSFWIDFVELSGKNDVVGMQALLDKITLERTEQSEVRKAIL 114 >gi|225017771|ref|ZP_03706963.1| hypothetical protein CLOSTMETH_01700 [Clostridium methylpentosum DSM 5476] gi|224949422|gb|EEG30631.1| hypothetical protein CLOSTMETH_01700 [Clostridium methylpentosum DSM 5476] Length = 112 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 39/108 (36%), Gaps = 8/108 (7%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSD 83 +S ++ + GI + ++ KG + LQ I+ I + D Sbjct: 12 KEQKVSAYRMYKDTGIPEATIGRWRKGTSSPSIDNLQKIANYFNISIDYLLGQKKGASDD 71 Query: 84 ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 I +E +P+ + + F + D K + K+ + ++ K Sbjct: 72 IDGQEF-------SPEAKLIAKLFDSL-DEKSQAKVEGFLEALADQNK 111 >gi|197337412|ref|YP_002158337.1| transcriptional regulator [Vibrio fischeri MJ11] gi|197314664|gb|ACH64113.1| transcriptional regulator [Vibrio fischeri MJ11] Length = 218 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 32/73 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R+ LG++ E+ + G+ + K E LQ ++ L+ I F Sbjct: 39 LGQRLKDIRIQLGLTLEEASKRTGLARSTLSKIENEQISPTFQALQKLATGLDIDIPQIF 98 Query: 75 DVSPTVCSDISSE 87 + T + + Sbjct: 99 EPPKTKGAAGRRD 111 >gi|127514418|ref|YP_001095615.1| XRE family transcriptional regulator [Shewanella loihica PV-4] gi|126639713|gb|ABO25356.1| transcriptional regulator, XRE family [Shewanella loihica PV-4] Length = 76 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 30/75 (40%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + G+R++ R +SQE+L E + + E+GV V + ++ L+ Sbjct: 2 NVILSRFGQRLKQIRTQQRLSQEQLAEICELDRTYISGIERGVRNVALINIVKLANGLKV 61 Query: 69 PISFFFDVSPTVCSD 83 S + D Sbjct: 62 SASSLLEFDVETKHD 76 >gi|59713884|ref|YP_206659.1| transcriptional regulator [Vibrio fischeri ES114] gi|59482132|gb|AAW87771.1| transcriptional regulator [Vibrio fischeri ES114] Length = 218 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 32/73 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R+ LG++ E+ + G+ + K E LQ ++ L+ I F Sbjct: 39 LGQRLKDIRIQLGLTLEEASKRTGLARSTLSKIENEQISPTFQALQKLATGLDIDIPQIF 98 Query: 75 DVSPTVCSDISSE 87 + T + + Sbjct: 99 EPPKTKGAAGRRD 111 >gi|37676355|ref|NP_936751.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|37200897|dbj|BAC96721.1| predicted transcriptional regulator [Vibrio vulnificus YJ016] Length = 232 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 53 LGQRIKEVRSRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLKIDMPQLF 112 Query: 75 D 75 + Sbjct: 113 E 113 >gi|163940975|ref|YP_001645859.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863172|gb|ABY44231.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 242 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + + ++ I Sbjct: 4 IHIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFVPLLASYFNISIDE 63 Query: 73 FF--------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL-V 123 + + ++ + + ++ + + + ++ ++ + Sbjct: 64 LICYTLQMEQEDIKNLYHRLAEAFSEEPFDEVMMECREVTKKYYSCFPLLIQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDMDRRIEILEEAM 141 >gi|172057738|ref|YP_001814198.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990259|gb|ACB61181.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 292 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 10/108 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K +P+ +G I+ R M+Q++L + + + ++ K E G N LQ Sbjct: 1 MM--KSLPH----MIGNEIKRIRKEKKMTQKELCDGI-CSQAEISKIENGRNSPTIDLLQ 53 Query: 61 HISEVLESPISFFFDV---SPTVCSDISSEENNVMDFISTPDGLQLNR 105 IS+ L P+S F S + + + L+L R Sbjct: 54 QISKRLRVPLSLLFRDQLESDAFREADNHLSSLFREQKYQEMRLELLR 101 >gi|239815284|ref|YP_002944194.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801861|gb|ACS18928.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 135 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 33/93 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI R + Q +L E LG+ Q +Q YE G R+ S L ++ L + Sbjct: 24 VAMGERIAQLRKARSLPQTQLAEALGVAQQTLQAYEAGTRRIPVSALPTVARTLSVTLEE 83 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F + L R Sbjct: 84 LFGKGQQAARTRRGPVPKWEQQMEAIAQLPKAR 116 >gi|224368109|ref|YP_002602272.1| HTH-type transcriptional regulator [Desulfobacterium autotrophicum HRM2] gi|223690825|gb|ACN14108.1| HTH-type transcriptional regulator [Desulfobacterium autotrophicum HRM2] Length = 211 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 53/138 (38%), Gaps = 4/138 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P VD VG RI+ R G+S +++ G Q+++ E G + + +S L Sbjct: 26 APGEVD-EVGLRIKNLREKKGLSIKEVANLTGFDSQRLEDIENGKIQPQLGTVMKLSRAL 84 Query: 67 ESPISFFFDVSPTVCSDIS-SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 +S + + I+ E + ++ + ++ + + + L+ Sbjct: 85 DSALGRLVSGVGSQLYSITRKNERKKISRSTSQKEQKNLYSYMSLAPEVQGRHMEALIVQ 144 Query: 126 IVSSEKKYRTIE--EECM 141 + + K ++ EE + Sbjct: 145 LEENPDKEISVHNGEEFI 162 >gi|325271879|ref|ZP_08138337.1| putative phage repressor [Pseudomonas sp. TJI-51] gi|324102998|gb|EGC00387.1| putative phage repressor [Pseudomonas sp. TJI-51] Length = 276 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 48/117 (41%), Gaps = 5/117 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R++ R + G++Q +L E GI + + E+G++R +S L I+++ + Sbjct: 1 MELKDRLKHARRLKGLTQTELAERAGIAQASISEIERGLSR-SSSHLVKIAQICGVDALW 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID----DVKVRQKIIELVRS 125 + ++ + V + I + R + + R ++++ Sbjct: 60 LAEGVGSIPAPTEPGYALVGEEIQKLSAADMVRQMLAKTGSGLSEEARNRLLQAAEE 116 >gi|313110592|ref|ZP_07796475.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310882977|gb|EFQ41571.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 193 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 3/95 (3%) Query: 2 VGNKKIPNP---VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 + K P P +D + +R+ R ++ +L E ++ + + E+ + AS Sbjct: 1 MDEKNPPGPLMDIDELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASV 60 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 L ++ L +S + + + Sbjct: 61 LGRLASGLGIALSELLGDTQAPAEPLCRRAQQEVW 95 >gi|310640785|ref|YP_003945543.1| transcriptional regulator, xre family [Paenibacillus polymyxa SC2] gi|309245735|gb|ADO55302.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2] Length = 124 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/121 (15%), Positives = 46/121 (38%), Gaps = 5/121 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +RI GM+++ + LGI+ +++G G ++L I+ + + + Sbjct: 4 IYQRIEELIKERGMTKKAFCQQLGISTGNFGDWKRGKTTPGTNKLIEIASFFNASLDWIM 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + ++ S QLN + + + R I+E + ++K + Sbjct: 64 LGRDVQSKVLKESQDPYFFGASG----QLNCQGESLSEAE-RDFILEYIEFTRFRKEKNQ 118 Query: 135 T 135 Sbjct: 119 H 119 >gi|297162496|gb|ADI12208.1| hypothetical protein SBI_09090 [Streptomyces bingchenggensis BCW-1] Length = 199 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 2/98 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G + +L E GI+ + + E G + L +++ + P+ Sbjct: 13 VGPRLRSLRQARGATLSQLSETTGISVSTLSRLESGQRKPTLELLLPLAKAYQVPLDELV 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQI 110 T + + P L + I Sbjct: 73 GAPATGDPRVHPRPFTRHGRVFVPLTRHLGGLHAYKMI 110 >gi|294678852|ref|YP_003579467.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477672|gb|ADE87060.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 478 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 44/122 (36%), Gaps = 4/122 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+++ R LG++Q ++ LG++ + E L ++EV + IS Sbjct: 10 IGQRLKVLRQSLGLTQAQMAAELGVSASYITLIEADQRPASVKLLMRLAEVYDLNISELS 69 Query: 75 DVSPTVCSD----ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + D + + + + +I VR + + Sbjct: 70 PAADAQLASDFAAALKTPAAGADAVPRAEIEAVLQASPRIAAAFVRLQAAHRAAVLAPMA 129 Query: 131 KK 132 ++ Sbjct: 130 EE 131 >gi|294013139|ref|YP_003546599.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292676469|dbj|BAI97987.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 80 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P + +G +R R + G++QE L + + E+G + + ++ L+ Sbjct: 4 DPDLVPLGDAVRQLRKVRGLTQEDLSGLTELHRNHIGGIERGERNITIKTMLALARALDV 63 Query: 69 PISFFFD 75 + F Sbjct: 64 QPAELFS 70 >gi|266623939|ref|ZP_06116874.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288864240|gb|EFC96538.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 147 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 3/110 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +N+G+RIR R M+Q +L E +G T Q V KYE G V + +L +++ L + S Sbjct: 1 MNIGERIRGLREKQEMTQTELAEKIGSTKQTVYKYENGVVTNIPYDKLILLAKALGTTPS 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + +EE +D ++ L +ID + KI + Sbjct: 61 SLMGWD--KIEEAINEEFTRLDNLTKQYILLFELNGYKIDVGDEQVKITD 108 >gi|169832243|ref|YP_001718225.1| helix-turn-helix domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169639087|gb|ACA60593.1| helix-turn-helix domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 95 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 32/72 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R G +Q +L L ++ + +YEKG+ L+ ++ VLE+ + + Sbjct: 5 RLRKAREARGWTQSQLAAKLNVSDATISRYEKGLRYPDIETLKRLALVLETSVDYLVGEK 64 Query: 78 PTVCSDISSEEN 89 P + E Sbjct: 65 PDDPDEKLPPEA 76 >gi|154498394|ref|ZP_02036772.1| hypothetical protein BACCAP_02383 [Bacteroides capillosus ATCC 29799] gi|150272462|gb|EDM99647.1| hypothetical protein BACCAP_02383 [Bacteroides capillosus ATCC 29799] Length = 149 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/148 (12%), Positives = 42/148 (28%), Gaps = 16/148 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +RI R G+S+ LG +K+E G + + ++ + + Sbjct: 2 VTLAQRIEELRTAKGLSRPAAAAALGFPKGAFEKFETGRQTPTKDQQEKMANFFGVSLFY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK----------------VR 116 S V R + +R Sbjct: 62 LRGESSDPTRQDDWMSGAVPQDEPVHVPTPAPRKAQPSAQPQGTVMDSVLATKQVQDLLR 121 Query: 117 QKIIELVRSIVSSEKKYRTIEEECMVEQ 144 +++ +RS E + + E + ++ Sbjct: 122 SIVLDTLRSPEGQELIAKAVHRELLKQK 149 >gi|152976782|ref|YP_001376299.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025534|gb|ABS23304.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 181 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + EE + ++ Sbjct: 61 LLLEQKNRMKIVKKEERKYSVYGKDKQRIEHV 92 >gi|15672309|ref|NP_266483.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|116511183|ref|YP_808399.1| transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|281490873|ref|YP_003352853.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|12723193|gb|AAK04425.1|AE006269_10 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|116106837|gb|ABJ71977.1| Predicted transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|281374631|gb|ADA64151.1| Transcriptional regulator, Cro/CI family [Lactococcus lactis subsp. lactis KF147] gi|300069966|gb|ADJ59366.1| Transcriptional regulator, Cro/CI family protein [Lactococcus lactis subsp. cremoris NZ9000] gi|326405905|gb|ADZ62976.1| Cro/CI family transcriptional regulator [Lactococcus lactis subsp. lactis CV56] Length = 97 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 29/76 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +IR R + +SQE + ++ Q + E + ++E L + + F+ Sbjct: 3 NKIRELRRLSHLSQEDVAHIAHVSRQTINAIENDKYDPELTLAFKLAETLGTTVDELFNY 62 Query: 77 SPTVCSDISSEENNVM 92 PTV ++ Sbjct: 63 QPTVVKRKENDVFWCE 78 >gi|323693418|ref|ZP_08107631.1| hypothetical protein HMPREF9475_02494 [Clostridium symbiosum WAL-14673] gi|323502526|gb|EGB18375.1| hypothetical protein HMPREF9475_02494 [Clostridium symbiosum WAL-14673] Length = 180 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 5/107 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ V K IR R +S ++L G++ + + E+G S L IS ++ P Sbjct: 1 MNLIVAKNIRRLREENKLSMDELSRLSGVSKSMLAQIERGDGNPTISTLWKISNGMKVPF 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 V P I + + +G R + D + R+ Sbjct: 61 DAL-TVRPENLYQIVKTSE--IQPLLEDNGK--VRNYPVFPDDENRR 102 >gi|297565618|ref|YP_003684590.1| XRE family transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296850067|gb|ADH63082.1| transcriptional regulator, XRE family [Meiothermus silvanus DSM 9946] Length = 73 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ R MSQ L ++ + + E G L ++ L Sbjct: 1 MIGERLKALREARQMSQYDLARAAHVSQGLIWQIEANRKNPGLKTLLRLANALSVSPDQL 60 Query: 74 F 74 Sbjct: 61 L 61 >gi|296451497|ref|ZP_06893233.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296880153|ref|ZP_06904120.1| MerR family transcriptional regulator [Clostridium difficile NAP07] gi|296259672|gb|EFH06531.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296428878|gb|EFH14758.1| MerR family transcriptional regulator [Clostridium difficile NAP07] Length = 196 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++G +I+ R M+ + + E ++ + + E+G+ V L I+ VL+ + Sbjct: 3 LNKDIGAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 ++FF + + + + + + + ++IE++ S S E Sbjct: 63 TYFFMKPKEHKRAVLRSYEKEVFDVENSTFI-HYHLSSSLKEKTMLPRLIEILPSKSSEE 121 >gi|322421967|ref|YP_004201190.1| helix-turn-helix domain-containing protein [Geobacter sp. M18] gi|320128354|gb|ADW15914.1| helix-turn-helix domain protein [Geobacter sp. M18] Length = 305 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQH 61 N+K+P P G RIR R ++Q + +G+T + ++E + Q Sbjct: 7 KNEKVPLPSVAIDGIRIRTIRETKKLTQLYVANVVGVTTDTISRWENNRYPSIKRDNAQK 66 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE 87 +++ LE + P + + E Sbjct: 67 LADALEVTLEEILQPEPPETPEAAQE 92 >gi|228910198|ref|ZP_04074017.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] gi|228849481|gb|EEM94316.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] Length = 194 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 34/92 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ + G++ + + E S L+ IS L P+ + Sbjct: 14 MNIGSAIREIRQRRGITIAQICKGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 73 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + EE + ++ Sbjct: 74 LLLEQKDRLKIVKKEERKYSVYGKDEQRIEHV 105 >gi|229090748|ref|ZP_04221981.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42] gi|228692690|gb|EEL46416.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-42] Length = 403 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDDDEIVELIQ 74 >gi|168215895|ref|ZP_02641520.1| transcriptional regulator, Cro/CI family [Clostridium perfringens NCTC 8239] gi|182382138|gb|EDT79617.1| transcriptional regulator, Cro/CI family [Clostridium perfringens NCTC 8239] Length = 170 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 51/121 (42%), Gaps = 7/121 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R G++Q++ + + + + +QKYE L+ I+ L+ S Sbjct: 4 IGDKIKAIRKERGLTQKEFAKKINKSERMIQKYENSEVEPRIEVLREIATALDISFSELI 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + S + ++I F Q+ + + + K+I + ++ + K + Sbjct: 64 NPKNSSINISESIDKFKNEYI------DFIIDFEQL-NNEGQNKVINYTKDLLDNPKYKK 116 Query: 135 T 135 Sbjct: 117 E 117 >gi|217958856|ref|YP_002337404.1| transcriptional regulator SinR [Bacillus cereus AH187] gi|222095015|ref|YP_002529075.1| transcriptional regulator sinr [Bacillus cereus Q1] gi|229138068|ref|ZP_04266666.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST26] gi|229172021|ref|ZP_04299586.1| HTH-type transcriptional regulator sinR [Bacillus cereus MM3] gi|217067870|gb|ACJ82120.1| transcriptional regulator SinR [Bacillus cereus AH187] gi|221239073|gb|ACM11783.1| transcriptional regulator SinR [Bacillus cereus Q1] gi|228611364|gb|EEK68621.1| HTH-type transcriptional regulator sinR [Bacillus cereus MM3] gi|228645413|gb|EEL01647.1| HTH-type transcriptional regulator sinR [Bacillus cereus BDRD-ST26] gi|324325398|gb|ADY20658.1| transcriptional regulator SinR [Bacillus thuringiensis serovar finitimus YBT-020] Length = 107 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T + + SE V D +S+ + R F Sbjct: 61 LLHDETTKENHLDSEWTQLVKDAMSSGVSKEQFREF 96 >gi|51597909|ref|YP_072100.1| transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108809407|ref|YP_653323.1| putative transcriptional regulator [Yersinia pestis Antiqua] gi|108813719|ref|YP_649486.1| transcriptional regulatory protein [Yersinia pestis Nepal516] gi|145597534|ref|YP_001161610.1| transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|153997450|ref|ZP_02022550.1| putative transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|165927582|ref|ZP_02223414.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165937413|ref|ZP_02225976.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. IP275] gi|166012119|ref|ZP_02233017.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166214594|ref|ZP_02240629.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167420515|ref|ZP_02312268.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425474|ref|ZP_02317227.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466471|ref|ZP_02331175.1| putative transcriptional regulatory protein [Yersinia pestis FV-1] gi|218930622|ref|YP_002348497.1| putative transcriptional regulator [Yersinia pestis CO92] gi|229836747|ref|ZP_04456912.1| putative transcriptional regulatory protein [Yersinia pestis Pestoides A] gi|229839352|ref|ZP_04459511.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229899916|ref|ZP_04515057.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229904228|ref|ZP_04519339.1| putative transcriptional regulatory protein [Yersinia pestis Nepal516] gi|270488666|ref|ZP_06205740.1| helix-turn-helix containing protein [Yersinia pestis KIM D27] gi|294505211|ref|YP_003569273.1| putative transcriptional regulatory protein [Yersinia pestis Z176003] gi|51591191|emb|CAH22856.1| putative transcriptional regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108777367|gb|ABG19886.1| transcriptional regulatory protein [Yersinia pestis Nepal516] gi|108781320|gb|ABG15378.1| putative transcriptional regulatory protein [Yersinia pestis Antiqua] gi|115349233|emb|CAL22200.1| putative transcriptional regulatory protein [Yersinia pestis CO92] gi|145209230|gb|ABP38637.1| transcriptional regulatory protein [Yersinia pestis Pestoides F] gi|149289087|gb|EDM39167.1| putative transcriptional regulatory protein [Yersinia pestis CA88-4125] gi|165914518|gb|EDR33132.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. IP275] gi|165920476|gb|EDR37753.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165988959|gb|EDR41260.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166204216|gb|EDR48696.1| DNA-binding protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166961321|gb|EDR57342.1| DNA-binding protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055488|gb|EDR65281.1| DNA-binding protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678346|gb|EEO74451.1| putative transcriptional regulatory protein [Yersinia pestis Nepal516] gi|229687408|gb|EEO79483.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229695718|gb|EEO85765.1| putative transcriptional regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705690|gb|EEO91699.1| putative transcriptional regulatory protein [Yersinia pestis Pestoides A] gi|262363273|gb|ACY59994.1| putative transcriptional regulatory protein [Yersinia pestis D106004] gi|262367348|gb|ACY63905.1| putative transcriptional regulatory protein [Yersinia pestis D182038] gi|270337170|gb|EFA47947.1| helix-turn-helix containing protein [Yersinia pestis KIM D27] gi|294355670|gb|ADE66011.1| putative transcriptional regulatory protein [Yersinia pestis Z176003] gi|320017231|gb|ADW00803.1| putative transcriptional regulatory protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 135 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 16/113 (14%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R +Q+++ +G+ Q KYE G++ A +L ++E+L + I + Sbjct: 19 GLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLITLAELLVTSIDYLLL 78 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVRSI 126 S S I + +L F + + ++ +I+L+ ++ Sbjct: 79 GSSNETSSIRN--------------TRLLERFKALSQCQPEEQETVIKLIDAV 117 >gi|325264449|ref|ZP_08131179.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324030111|gb|EGB91396.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 100 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 5/97 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++ R++ ++Q KL + LG+T + YE G+ L IS++ + + Sbjct: 2 VYFGNTLKTLRLLNNLTQAKLAQRLGVTKSVISAYETGLRMPSYDILISISQIFKVTTDY 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + D+S + + ++ L + + Sbjct: 62 LLGLEKKQDLDLSGLTADEIQALT-----DLIKAMKR 93 >gi|229111169|ref|ZP_04240726.1| Immunity repressor protein [Bacillus cereus Rock1-15] gi|228672333|gb|EEL27620.1| Immunity repressor protein [Bacillus cereus Rock1-15] Length = 142 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R M+Q+ L E I+ + E G L+ I+ L+ I+ Sbjct: 6 NIKKYRKEKKMTQKALAEKANISRSYLGDLESGRYNPSLDTLRTIASALDIDINLLLTED 65 Query: 78 PTVCSDISSEENN 90 +D + +++ Sbjct: 66 GATQTDNLTSKDD 78 >gi|227513202|ref|ZP_03943251.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227083583|gb|EEI18895.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 132 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 44/112 (39%), Gaps = 6/112 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G R++ R ++QE+LG+ + ++ + YEK + L ++ + Sbjct: 7 GTRLKQLRTEHKLTQEELGKKINVSKASISLYEKNLREPSKDSLVTLANFFNVSTDYLLG 66 Query: 75 ---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR--QKIIE 121 D + S ++++ + + + + D + + ++++E Sbjct: 67 NTIDRNGHTPSWATNDDKKDLKRFLEENANGMTYGGEGLTDEEQKQVRRVLE 118 >gi|160894971|ref|ZP_02075745.1| hypothetical protein CLOL250_02521 [Clostridium sp. L2-50] gi|156863402|gb|EDO56833.1| hypothetical protein CLOL250_02521 [Clostridium sp. L2-50] Length = 118 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 33/71 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 1 MPIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVL 60 Query: 67 ESPISFFFDVS 77 + + Sbjct: 61 HISLDTLINPD 71 >gi|254254772|ref|ZP_04948089.1| hypothetical protein BDAG_04090 [Burkholderia dolosa AUO158] gi|124899417|gb|EAY71260.1| hypothetical protein BDAG_04090 [Burkholderia dolosa AUO158] Length = 199 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 46/131 (35%), Gaps = 6/131 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L + G+T + K E+G++ + +S+ L + F Sbjct: 23 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALGVDVEQLFSEG 82 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV----RSIVSSEKKY 133 + + + + F I +K++ V R +S + Sbjct: 83 RDRELIAITRADERTATGAASQ--RHAHRFESIAAGVAPKKMLPFVVYPPREFAASTFRE 140 Query: 134 RTIEEECMVEQ 144 EE V + Sbjct: 141 HEGEEFLFVHK 151 >gi|118479525|ref|YP_896676.1| MerR family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118418750|gb|ABK87169.1| transcriptional regulator, MerR family [Bacillus thuringiensis str. Al Hakam] Length = 237 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 57 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 116 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + E + ++ Sbjct: 117 LLLEQKDRLKVVKKVERKYSVYGKDEQRIEHV 148 >gi|47567384|ref|ZP_00238097.1| repressor protein, putative [Bacillus cereus G9241] gi|47568454|ref|ZP_00239154.1| repressor protein, putative [Bacillus cereus G9241] gi|47554845|gb|EAL13196.1| repressor protein, putative [Bacillus cereus G9241] gi|47556005|gb|EAL14343.1| repressor protein, putative [Bacillus cereus G9241] Length = 65 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 5 NKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVRVEEIFTL 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|329848452|ref|ZP_08263480.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328843515|gb|EGF93084.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 127 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 48/103 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R L MSQ+ L + +G+TFQQVQKYE+G NRV AS+L I++ L + Sbjct: 2 GLNIRRIRRDLNMSQQVLADRIGLTFQQVQKYERGANRVSASKLVAIAKALGVSPASLLP 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 S ++ + + L + + D +R Sbjct: 62 DSQAAAAEPWQTDAQALYLRCPKVFEVLLKLPKRFLDYMIRTA 104 >gi|331266049|ref|YP_004325679.1| transcriptional repressor, putative [Streptococcus oralis Uo5] gi|326682721|emb|CBZ00338.1| transcriptional repressor, putative [Streptococcus oralis Uo5] Length = 69 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R+ ++Q L E +G+T Q + E G Q I L + F Sbjct: 6 KLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLFLCQSICRCLGKTLDQLFWEE 65 Query: 78 PTVC 81 Sbjct: 66 EDEK 69 >gi|317470497|ref|ZP_07929885.1| hypothetical protein HMPREF1011_00232 [Anaerostipes sp. 3_2_56FAA] gi|316902012|gb|EFV23938.1| hypothetical protein HMPREF1011_00232 [Anaerostipes sp. 3_2_56FAA] Length = 149 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 34/82 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G + R +SQE + LG++ Q + K+E G + ++++ + + Sbjct: 1 MNLGNSLFNARKKSNLSQEDVAGKLGVSRQTISKWETGETLPDIRQSKNLAVLYHVSLDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + + + EN + Sbjct: 61 LIEFDIELKEIEQAIENTNEEI 82 >gi|302541725|ref|ZP_07294067.1| putative DNA-binding protein [Streptomyces hygroscopicus ATCC 53653] gi|302459343|gb|EFL22436.1| putative DNA-binding protein [Streptomyces himastatinicus ATCC 53653] Length = 199 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 37/121 (30%), Gaps = 5/121 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V R+R R G++ E +G++ + + E G + L ++ + +S Sbjct: 4 VAPRLRDLRRGSGLTLEAAAHRVGLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSDLL 63 Query: 75 DVSPTVCS-----DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 P D + G +++ + +LVR Sbjct: 64 GEVPPSQDPIVRADRMEAQEAGGWTYRRAGGSGRAMQALRLHVPESSGAQDDLVRVHAGE 123 Query: 130 E 130 E Sbjct: 124 E 124 >gi|300704005|ref|YP_003745607.1| hypothetical protein RCFBP_11703 [Ralstonia solanacearum CFBP2957] gi|299071668|emb|CBJ42992.1| protein of unknown function [Ralstonia solanacearum CFBP2957] Length = 140 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 32/112 (28%), Gaps = 13/112 (11%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D VG RI+ R G+S + LG+ + V ++E L + Sbjct: 7 DQTVGDRIKAVRGDRGIS--EFAAELGVNRKTVTRWEADEALPDGGSLLVLKTRFGVDPG 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + QL + ++R + ++ Sbjct: 65 WVLTGEGDSPDASTLTPEE-----------QLLLSRYRSSPAELRDAALRVL 105 >gi|296270462|ref|YP_003653094.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093249|gb|ADG89201.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 474 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 8/115 (6%) Query: 17 KRIR--LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 KR+R RR LG++QE L + L + V ++E+ ++ +L+ + Sbjct: 7 KRVRFIQRRKALGLTQENLADALHVERSTVARWERAETEPQPWLRPRLAALLKVSAAELE 66 Query: 75 DVS------PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + P ++ ++ +++ F D V RQ + L Sbjct: 67 SLLADVAPVPGRADRLAHSSAPFDFSLTEEQAVRMLEGFSAYDIVSRRQVVAGLA 121 >gi|291528282|emb|CBK93868.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 104 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 42/101 (41%), Gaps = 1/101 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+RI+ R ++QE+L + ++ V E+G+ I+ L+ Sbjct: 4 KAVGQRIKAAREAKNLTQEELAALVNLSTTHVSVIERGLKVTKLDTFVAIANALDVSADA 63 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 DV + +++E ++++ + + ++ + D Sbjct: 64 LLIDVVTHSVTGVTNELSDMIGKLPKDEQKRILNAVRALVD 104 >gi|289549615|ref|YP_003470519.1| putativetranscriptional regulator [Staphylococcus lugdunensis HKU09-01] gi|289179147|gb|ADC86392.1| putativetranscriptional regulator [Staphylococcus lugdunensis HKU09-01] Length = 368 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 34/75 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + K I+ +R LG++Q+KL L IT + K+E G L ++++ + Sbjct: 2 IKINKVIKAQRTKLGLTQDKLAAYLDITKPTISKWENGSLMPDIQLLPKLAKLFNMSVDE 61 Query: 73 FFDVSPTVCSDISSE 87 D + + ++ Sbjct: 62 LLDYQDVLTKEDATH 76 >gi|242242403|ref|ZP_04796848.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|242234110|gb|EES36422.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|319401579|gb|EFV89789.1| helix-turn-helix family protein [Staphylococcus epidermidis FRI909] Length = 179 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++R R I ++QE+L E ++ + + E ++ EVL + S Sbjct: 1 MDIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF S E + D Sbjct: 61 FFKESSDEKVLYKKNEQTIYD 81 >gi|226322725|ref|ZP_03798243.1| hypothetical protein COPCOM_00497 [Coprococcus comes ATCC 27758] gi|225208886|gb|EEG91240.1| hypothetical protein COPCOM_00497 [Coprococcus comes ATCC 27758] Length = 194 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 36/91 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G+RIR R M+ LGE G++ + E+ L I E L+ I + Sbjct: 6 HIGERIRECRKKKMMTIRVLGEYTGLSAGYLSMLEQNKTSPNVDSLARICEALDIDIQYA 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + I EE + + +++ Sbjct: 66 LEGEMPGKTVIHREEMSKHLYPEENMTVEVA 96 >gi|239626675|ref|ZP_04669706.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239516821|gb|EEQ56687.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 194 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +GK I R M+Q +L + I+ + V K+E+G+ S L +S++ + Sbjct: 3 NVKIGKLIYQLRKENRMTQLQLANQMNISDKAVSKWERGLGCPELSLLPELSKIFNVDLE 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFI 95 + + ++ Sbjct: 63 KLLSGELDANEILGGNMKKMHFYM 86 >gi|254441108|ref|ZP_05054601.1| Helix-turn-helix domain protein [Octadecabacter antarcticus 307] gi|198251186|gb|EDY75501.1| Helix-turn-helix domain protein [Octadecabacter antarcticus 307] Length = 427 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 45/124 (36%), Gaps = 8/124 (6%) Query: 12 DINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D + G R+R RR+ LG+ Q + + GI+ + E R+G L+ ++ VLE + Sbjct: 3 DRIITGTRVRNRRIDLGLRQVNVAKATGISGSYLNLIEHNRRRIGGKLLRDLARVLEIDV 62 Query: 71 SFFFDVSPTVCSDISSEENN--VMDFISTPDGLQLNRYFIQIDD--VKVRQKIIEL---V 123 + D E + L F R++I +L Sbjct: 63 ALLGDEVGDAILGPLKEAAAAFPGASVEDLRTKDLVERFPGWAALIAAQRRRITQLEDRA 122 Query: 124 RSIV 127 ++ Sbjct: 123 EALS 126 >gi|194397247|ref|YP_002038409.1| transcriptional regulator [Streptococcus pneumoniae G54] gi|194356914|gb|ACF55362.1| transcriptional regulator [Streptococcus pneumoniae G54] Length = 383 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 39/92 (42%), Gaps = 1/92 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R++ G+S+ +L + + +T Q + ++E + S H++ +++F + Sbjct: 4 GRVLKELRLLNGLSRAELAQRINLTEQAIWQFESNETKPKLSTKMHLANQFHVDLTYF-E 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 S ++T + + + Sbjct: 63 QEEESIRFDXSVIAFRNADLATRKTIDIQTMY 94 >gi|166033445|ref|ZP_02236274.1| hypothetical protein DORFOR_03171 [Dorea formicigenerans ATCC 27755] gi|225374572|ref|ZP_03751793.1| hypothetical protein ROSEINA2194_00187 [Roseburia inulinivorans DSM 16841] gi|166026630|gb|EDR45387.1| hypothetical protein DORFOR_03171 [Dorea formicigenerans ATCC 27755] gi|225213632|gb|EEG95986.1| hypothetical protein ROSEINA2194_00187 [Roseburia inulinivorans DSM 16841] gi|291524361|emb|CBK89948.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 118 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 36/77 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 1 MPIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVL 60 Query: 67 ESPISFFFDVSPTVCSD 83 + + ++ + Sbjct: 61 HISLDTLINPDVSLEDE 77 >gi|160893483|ref|ZP_02074268.1| hypothetical protein CLOL250_01034 [Clostridium sp. L2-50] gi|156864878|gb|EDO58309.1| hypothetical protein CLOL250_01034 [Clostridium sp. L2-50] Length = 122 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 6/106 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R ++Q +L E L I+ + E+G + + ++ + ++ + + Sbjct: 15 IGQRIVQIRHANNLTQYQLAEMLDISVKHCSAIERGKSSLSLEKMIDLCDIFNIDLDYLI 74 Query: 75 ------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 D P+ E D F I + + Sbjct: 75 RGVQKTDDIPSYIPHTVVEIMTSDDEEKKQHFRDYIEIFNAISNSQ 120 >gi|75758655|ref|ZP_00738772.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493826|gb|EAO56925.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 186 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 1/129 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 5 NINVGQKIMAFRKDAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF + T ++ N G D + ++ L+ SS + Sbjct: 65 NFF-LEDTNTEELVVRANQRKKMTFPESGNVSYELLSPNLDGSLELALMNLLPQTASSME 123 Query: 132 KYRTIEEEC 140 EE Sbjct: 124 PVAHKGEEI 132 >gi|318058268|ref|ZP_07976991.1| DNA-binding protein [Streptomyces sp. SA3_actG] gi|318078843|ref|ZP_07986175.1| DNA-binding protein [Streptomyces sp. SA3_actF] Length = 204 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 31/87 (35%), Gaps = 1/87 (1%) Query: 1 MVGNKKIPN-PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M + P+ + + V +R R G++ E + ++ + + E G + L Sbjct: 1 MSTEPEGPSGELAVTVAPHLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPML 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISS 86 ++ + +S +P + Sbjct: 61 LALARTYGTTVSELLGETPAGAGSVVR 87 >gi|308172435|ref|YP_003919140.1| hypothetical protein BAMF_0544 [Bacillus amyloliquefaciens DSM 7] gi|307605299|emb|CBI41670.1| yqaE hypothetical protein B. subtilis [Bacillus amyloliquefaciens DSM 7] Length = 126 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 41/118 (34%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ ++Q+++ + LGI YE+G L I++ + I F Sbjct: 6 RLKELRVGRKLNQQEVADNLGIARTTYASYEQGKREPDHETLVKIADFFDVSIDFLLRGE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + DG + + + ++I + + I KK Sbjct: 66 DHYRDKARELRKHNDVRFAAVDGREFSDSEKEEILADALRRIDGIEKIIEERFKKKNE 123 >gi|293373775|ref|ZP_06620121.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|298482606|ref|ZP_07000791.1| prophage L54a [Bacteroides sp. D22] gi|292631265|gb|EFF49897.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|298271313|gb|EFI12889.1| prophage L54a [Bacteroides sp. D22] Length = 131 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VG R+++ RM ++QE++GE L ++ K E G + +RL I+EVL Sbjct: 1 METDLKKIVGHRLQMLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVL 60 Query: 67 ESPISFFFD 75 F+ Sbjct: 61 NMSALELFN 69 >gi|284006683|emb|CBA71944.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 220 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 36/88 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G+R++ R + +Q LG+ +G+T V +EK +N G L ++ L + Sbjct: 3 SIVKTLGQRLKYLRKLKKYTQVTLGKAIGVTGVTVGYWEKDLNEPGGKALSKLARALNTT 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFIST 97 ++ + N + T Sbjct: 63 ENYLLYGKNPGSVIPINNSNIRFIPLLT 90 >gi|284097788|ref|ZP_06385777.1| lambda repressor [Candidatus Poribacteria sp. WGA-A3] gi|283830688|gb|EFC34809.1| lambda repressor [Candidatus Poribacteria sp. WGA-A3] Length = 128 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 3/114 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 +RI+ R G+SQ + + L I+ V ++E+G + ++ +L + Sbjct: 6 ERIQTARKQAGLSQADVAKALRISASAVNQWEQGFSKNIKLEHFFALASLLRQDPQWLAT 65 Query: 76 VSP-TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + + + D T + L Q+ ++R+ ++ +R + Sbjct: 66 GTVFPYVRHTQATPPKLDDPPLTSEEKALLHQVRQMPS-RLRKVLLRFLRGLSD 118 >gi|228957650|ref|ZP_04119398.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802035|gb|EEM48904.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 107 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T ++ SE V D +++ + R F Sbjct: 61 LLHDETTKEINLDSEWTQLVKDAMNSGVSKEQFREF 96 >gi|229119513|ref|ZP_04248807.1| transcriptional regulator [Bacillus cereus Rock1-3] gi|228663945|gb|EEL19492.1| transcriptional regulator [Bacillus cereus Rock1-3] Length = 196 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 31/79 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E + ++ Q + +E + L +S + + + Sbjct: 9 MNLSKQIKKYRDREGFSQEDLAEKIYVSRQTISNWENERSYPDIHNLLLLSVLFDVSLDD 68 Query: 73 FFDVSPTVCSDISSEENNV 91 + + + Sbjct: 69 LVKGDMEMMKNNLQQVKFN 87 >gi|284989965|ref|YP_003408519.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063210|gb|ADB74148.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 77 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R RR ++Q +L E +G++ Q + E+G I+ VL + FF Sbjct: 14 VRERRKERRITQAELAEQVGVSRQTIIAVEQGDYAPSVYLALRIARVLGGTVEEFFTEE 72 >gi|224542817|ref|ZP_03683356.1| hypothetical protein CATMIT_02006 [Catenibacterium mitsuokai DSM 15897] gi|224524261|gb|EEF93366.1| hypothetical protein CATMIT_02006 [Catenibacterium mitsuokai DSM 15897] Length = 177 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 6/135 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D ++ R+R R G + E L G+T + K E+G++ + ++ + + Sbjct: 1 MDADMAARLRSLRKKYGWTIESLALQTGLTKSYLSKVERGLSVPSIAVALKLAHAFKIDV 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV----RSI 126 F + I+ I+ G + I ++++ + + Sbjct: 61 EQLFSDEAGERASITVVRAGERTPIA-RSGKASKPVYEGIATQLGHKRLLPFMMYPPKDF 119 Query: 127 VSSEKKYRTIEEECM 141 +SE EE M Sbjct: 120 ATSE-FKEHAGEELM 133 >gi|254512974|ref|ZP_05125040.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221532973|gb|EEE35968.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 195 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G ++ R S L E GI+ + + E G+ L +++ LE PI Sbjct: 10 IDRAIGASLKELRQSRKQSARWLAEQSGISAAMISRIENGLVSPSIDTLAALADALEVPI 69 Query: 71 SFFFDVSPTVCSD 83 F + T +D Sbjct: 70 VSLFREARTEHTD 82 >gi|239617046|ref|YP_002940368.1| protein of unknown function DUF955 [Kosmotoga olearia TBF 19.5.1] gi|239505877|gb|ACR79364.1| protein of unknown function DUF955 [Kosmotoga olearia TBF 19.5.1] Length = 351 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 34/62 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI+ R+ MS KL E +G++ + KYE+ + + L +S+ L + + Sbjct: 1 MSIGSRIKQARIRNNMSLRKLSEKVGVSAMAISKYERDEDVPSSKVLIRLSKALNVKVEY 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|197103371|ref|YP_002128749.1| transcriptional regulator, MerR family [Phenylobacterium zucineum HLK1] gi|196480647|gb|ACG80174.1| transcriptional regulator, MerR family [Phenylobacterium zucineum HLK1] Length = 120 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 47/102 (46%), Gaps = 1/102 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ IR+ R +G++Q L E +G+T Q + E+G L+ ++ L++P+ FF Sbjct: 19 VGRAIRMHRERVGLTQAALAEAVGLTEQYIGVVERGARAPSFRTLEALARTLKTPVRDFF 78 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 P + ++V+ ++ + R + + R Sbjct: 79 -PHPLAQEEADEALSDVIGLLAPLTAEERARALKVLQSMLSR 119 >gi|218900292|ref|YP_002448703.1| DNA-binding protein [Bacillus cereus G9842] gi|228923896|ref|ZP_04087173.1| hypothetical protein bthur0011_48700 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228955409|ref|ZP_04117414.1| hypothetical protein bthur0006_47650 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961399|ref|ZP_04123013.1| hypothetical protein bthur0005_48430 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228988395|ref|ZP_04148487.1| hypothetical protein bthur0001_50500 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229032787|ref|ZP_04188745.1| hypothetical protein bcere0028_48190 [Bacillus cereus AH1271] gi|229072618|ref|ZP_04205820.1| hypothetical protein bcere0025_47790 [Bacillus cereus F65185] gi|229082377|ref|ZP_04214840.1| hypothetical protein bcere0023_49940 [Bacillus cereus Rock4-2] gi|229112579|ref|ZP_04242116.1| hypothetical protein bcere0018_48190 [Bacillus cereus Rock1-15] gi|229147696|ref|ZP_04276039.1| hypothetical protein bcere0012_48210 [Bacillus cereus BDRD-ST24] gi|229181426|ref|ZP_04308754.1| hypothetical protein bcere0005_47670 [Bacillus cereus 172560W] gi|229193412|ref|ZP_04320360.1| hypothetical protein bcere0002_50560 [Bacillus cereus ATCC 10876] gi|218542202|gb|ACK94596.1| DNA-binding protein [Bacillus cereus G9842] gi|228590067|gb|EEK47938.1| hypothetical protein bcere0002_50560 [Bacillus cereus ATCC 10876] gi|228602001|gb|EEK59494.1| hypothetical protein bcere0005_47670 [Bacillus cereus 172560W] gi|228635709|gb|EEK92196.1| hypothetical protein bcere0012_48210 [Bacillus cereus BDRD-ST24] gi|228670959|gb|EEL26266.1| hypothetical protein bcere0018_48190 [Bacillus cereus Rock1-15] gi|228700809|gb|EEL53332.1| hypothetical protein bcere0023_49940 [Bacillus cereus Rock4-2] gi|228710594|gb|EEL62567.1| hypothetical protein bcere0025_47790 [Bacillus cereus F65185] gi|228728555|gb|EEL79573.1| hypothetical protein bcere0028_48190 [Bacillus cereus AH1271] gi|228771376|gb|EEM19850.1| hypothetical protein bthur0001_50500 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228798284|gb|EEM45283.1| hypothetical protein bthur0005_48430 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804201|gb|EEM50815.1| hypothetical protein bthur0006_47650 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228835695|gb|EEM81059.1| hypothetical protein bthur0011_48700 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 65 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 5 NKIKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|163737060|ref|ZP_02144478.1| transcriptional regulator, XRE family with cupin sensor domain [Phaeobacter gallaeciensis BS107] gi|161389664|gb|EDQ14015.1| transcriptional regulator, XRE family with cupin sensor domain [Phaeobacter gallaeciensis BS107] Length = 205 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 3/105 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + P P+ +G IR RR +G++ + L + G++ + + E+ L Sbjct: 11 AKTRSSPGPM---LGALIRKRRKQMGLTLQALCDTAGVSVGYLSQVERDNATPTLGTLAQ 67 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 I+ LE + +F + + + + Sbjct: 68 IASALEVGLEYFIATPKPSDALTRATTRTQFSLAGSSITYEALGA 112 >gi|163740517|ref|ZP_02147911.1| transcriptional regulator, XRE family with cupin sensor domain [Phaeobacter gallaeciensis 2.10] gi|161386375|gb|EDQ10750.1| transcriptional regulator, XRE family with cupin sensor domain [Phaeobacter gallaeciensis 2.10] Length = 205 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 3/105 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + P P+ +G IR RR +G++ + L + G++ + + E+ L Sbjct: 11 AKTRSSPGPM---LGALIRKRRKQMGLTLQALCDTAGVSVGYLSQVERDNATPTLGTLAQ 67 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 I+ LE + +F + + + + Sbjct: 68 IASALEVGLEYFIATPKPSDALTRATTRTQFSLAGSSITYEALGA 112 >gi|1572852|gb|AAD13636.1| putative DNA binding transcription repressor [Pseudomonas aeruginosa] Length = 109 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 40/120 (33%), Gaps = 14/120 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G++Q+++ E G++ YE G A + +++VL Sbjct: 1 MTLAANLKKFRAARGLTQQQVYEAAGVSKSSYTGYEAGHGMPSADKALAMAKVLGVTTDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + D + R F + Q I L + E++ Sbjct: 61 LLMDESE--------------LLISDDMRPILRRFEALPAEIRNQARIALKGVLFGYEQE 106 >gi|150388221|ref|YP_001318270.1| XRE family plasmid maintenance system antidote protein [Alkaliphilus metalliredigens QYMF] gi|150389695|ref|YP_001319744.1| XRE family plasmid maintenance system antidote protein [Alkaliphilus metalliredigens QYMF] gi|150392083|ref|YP_001322132.1| XRE family plasmid maintenance system antidote protein [Alkaliphilus metalliredigens QYMF] gi|149948083|gb|ABR46611.1| plasmid maintenance system antidote protein, XRE family [Alkaliphilus metalliredigens QYMF] gi|149949557|gb|ABR48085.1| plasmid maintenance system antidote protein, XRE family [Alkaliphilus metalliredigens QYMF] gi|149951945|gb|ABR50473.1| plasmid maintenance system antidote protein, XRE family [Alkaliphilus metalliredigens QYMF] Length = 254 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 2/112 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I +GK I R M E+L + I Q ++ YE G + + + I + L Sbjct: 110 NIEIGKNITHVREDAKMDVEQLAAAINIKPQALKDYESGKKVIPSYVIHRICKELSVLPL 169 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F D + + SE + ++ + L +F + +++I ++ Sbjct: 170 FLLDPEEVIDKEYKSENADFGHSLTQFEQDTL--HFFRELSRSDQEEIAHMI 219 >gi|323466842|gb|ADX70529.1| Putative uncharacterized protein [Lactobacillus helveticus H10] Length = 292 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 55/122 (45%), Gaps = 7/122 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK +R R++ G++Q ++ I+ K E+GV+ + A L + + Sbjct: 1 MKIGKLLRETRLVAGLTQTEM-AAGAISESFYSKVERGVHNIDADTLVEVLKANHIDPVQ 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF + S + +++D + + ++ + + +K+ +L + I +E++ Sbjct: 60 FFSRTLDGPMQESPHKKSILD------AGFMVKKIVRSANKRDLEKLGQLKKEIDQAEEQ 113 Query: 133 YR 134 + Sbjct: 114 GK 115 >gi|294492433|gb|ADE91189.1| putative transcriptional regulator DicA [Escherichia coli IHE3034] Length = 125 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 13/124 (10%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI G SQ +L +G+T Q VQ++ G AS L + EV P+ +F Sbjct: 3 RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKATPKASSLDKLVEVTGHPLHWFL--- 59 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 + + + P +L + F + ++ K + Sbjct: 60 --LPPEEGEQIFTPDTMKIGPRQRELLQAFSAFPEEDQ--------EKMLQEIKDKKKSM 109 Query: 138 EECM 141 EE + Sbjct: 110 EETI 113 >gi|257879449|ref|ZP_05659102.1| predicted protein [Enterococcus faecium 1,230,933] gi|257813677|gb|EEV42435.1| predicted protein [Enterococcus faecium 1,230,933] Length = 133 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 11 VD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + +G+RIR R+ G SQ LG +G + + E G +V + L ++ VLE Sbjct: 18 IDYVKIGQRIRAARLEKGYSQADLGALVGCSNNHMSHVEVGQTKVSLAMLLKLAFVLEKN 77 Query: 70 ISFFFDVSPTVCSDISSEEN 89 +F +P D + Sbjct: 78 FDYFLLDTPYAKCDSIIDNE 97 >gi|255973945|ref|ZP_05424531.1| predicted protein [Enterococcus faecalis T2] gi|255966817|gb|EET97439.1| predicted protein [Enterococcus faecalis T2] Length = 250 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + ++ + ++ Sbjct: 84 WLLYGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMGRLSEEQL 125 >gi|254792649|ref|YP_003077486.1| hypothetical protein ECSP_1569 [Escherichia coli O157:H7 str. TW14359] gi|254592049|gb|ACT71410.1| hypothetical protein ECSP_1569 [Escherichia coli O157:H7 str. TW14359] Length = 200 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 44/115 (38%), Gaps = 1/115 (0%) Query: 4 NKKIPNPV-DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +K+ N + D ++ + + R ++ +L + G++ + K E+G + A+ L + Sbjct: 8 DKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRL 67 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + L +S F + + + +I G+ ++ + Sbjct: 68 ANALNITLSKLFAELEMQQNSLVLLADQQQHWIDEETGITRWSLSPAGACPELIK 122 >gi|229815060|ref|ZP_04445397.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM 13280] gi|229809290|gb|EEP45055.1| hypothetical protein COLINT_02102 [Collinsella intestinalis DSM 13280] Length = 155 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 + R G++QE+L L IT Q V ++E G G ++ I+ L+ P++ D+ Sbjct: 8 LAQTRRERGLTQEELAARLFITRQAVSRWETGATEPGIDMIKLIARELDVPVTRLLDMPE 67 Query: 79 TVCSDISSEENNVMDFISTPDGLQ 102 C DG + Sbjct: 68 HYCQSCGMMFTEPGQRGHEADGTE 91 >gi|220910125|ref|YP_002485436.1| hypothetical protein Cyan7425_4770 [Cyanothece sp. PCC 7425] gi|219866736|gb|ACL47075.1| protein of unknown function DUF955 [Cyanothece sp. PCC 7425] Length = 399 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 30/77 (38%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + +G+R++ R GM+Q E + + EKG R+ L Sbjct: 1 MTTNILDHVDLSQLGERLQQARKQCGMTQADAAEIINAARTTLVAIEKGERRLKPGELIK 60 Query: 62 ISEVLESPISFFFDVSP 78 ++ +S F + P Sbjct: 61 LARAYGRSVSDFLALQP 77 >gi|157374747|ref|YP_001473347.1| XRE family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157317121|gb|ABV36219.1| transcriptional regulator, XRE family [Shewanella sediminis HAW-EB3] Length = 510 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A + I+ V Sbjct: 13 FLGTKIRNLRKRNHLTMEDLSARCVRVDADSAPSVSYLSMIERGKRVPSAGMMAVIAAVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + + +F D P + Sbjct: 73 QKEVDWFLDDVPEDQAITPE 92 >gi|91777368|ref|YP_552576.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91690028|gb|ABE33226.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 276 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +P ++G+R+R R ++ E G++ + K E G+ LQ I Sbjct: 71 KPADPSTTDLGRRVRAARQAQDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVLG 130 Query: 66 LESPISFFFDVSP 78 L+ I F +P Sbjct: 131 LKIEIGELFGSTP 143 >gi|329117294|ref|ZP_08246011.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907699|gb|EGE54613.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 112 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 42/97 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + KRIRL R+ GM+QE+L E + V K E + L+ + + LE F Sbjct: 9 YISKRIRLLRLERGMTQEQLEEKADLGTNYVYKLENQSTNIKVKTLEKVMKALEVDFEGF 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 FD+S + S+ + +S+ ++ I Sbjct: 69 FDISLIEENSDLSDLMMQIKELSSGQQDRIINALSVI 105 >gi|326385820|ref|ZP_08207449.1| hypothetical protein Y88_2877 [Novosphingobium nitrogenifigens DSM 19370] gi|326209799|gb|EGD60587.1| hypothetical protein Y88_2877 [Novosphingobium nitrogenifigens DSM 19370] Length = 129 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 1/75 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R R G+ Q + E +GI+ + YEKG AS + S+V ++ Sbjct: 1 MSIGARFLEIRKAKGLKQTDVAEAIGISHGALVNYEKGR-EPPASAILAFSQVYGVSANW 59 Query: 73 FFDVSPTVCSDISSE 87 ++ Sbjct: 60 LLTGEGRPDAESLDS 74 >gi|301061349|ref|ZP_07202130.1| cupin domain protein [delta proteobacterium NaphS2] gi|300444544|gb|EFK08528.1| cupin domain protein [delta proteobacterium NaphS2] Length = 234 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 29/72 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +NVG+R++ R ++ + + + +++ E G + +++ L+ Sbjct: 47 DIQVNVGERVKRVRKDRDLTLQDISRRTDLDVAFLEQIENGSVAPPLGTVIKLAKALDLK 106 Query: 70 ISFFFDVSPTVC 81 + +F Sbjct: 107 MGYFISGDEDRP 118 >gi|284800921|ref|YP_003412786.1| transcriptional regulator [Listeria monocytogenes 08-5578] gi|284056483|gb|ADB67424.1| transcriptional regulator [Listeria monocytogenes 08-5578] Length = 108 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 5/111 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK ++ R+ GM+Q LG L I+ + KYE G L+ I+++ F Sbjct: 3 GKILKTLRINRGMTQADLGSKLNISKVSISKYENGNQFPDTDTLKRIADIFNVSTDFLLG 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + +++ ++ + K RQ++ E+ + + Sbjct: 63 REEAIPQNLAFDDLRGLTEDDLKKVNNYIALIK-----KQRQELEEIEKEL 108 >gi|229019581|ref|ZP_04176397.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] gi|229025821|ref|ZP_04182220.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228735529|gb|EEL86125.1| Transcriptional regulator, MerR [Bacillus cereus AH1272] gi|228741747|gb|EEL91931.1| Transcriptional regulator, MerR [Bacillus cereus AH1273] Length = 181 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L IS L P+ + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLDTISNFLNVPLPY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +E + ++ Sbjct: 61 LLLEQKDRLKIVKKDERKYSVYGKDEQRIEHV 92 >gi|257784647|ref|YP_003179864.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] gi|257473154|gb|ACV51273.1| transcriptional regulator, XRE family [Atopobium parvulum DSM 20469] Length = 142 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + + R SQE+L + +G++ Q + KYE G + + + + V I Sbjct: 5 ENLVELRKYHDFSQEELADMIGVSRQTLSKYETGESLPDIEKCKRFANVFGVTIDDLISY 64 Query: 77 SPTVCSDI 84 ++ Sbjct: 65 DKKNEDNL 72 >gi|167856042|ref|ZP_02478786.1| helix-turn-helix domain protein [Haemophilus parasuis 29755] gi|219870567|ref|YP_002474942.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] gi|167852837|gb|EDS24107.1| helix-turn-helix domain protein [Haemophilus parasuis 29755] gi|219690771|gb|ACL31994.1| XRE family transcriptional regulator [Haemophilus parasuis SH0165] Length = 114 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 41/96 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R G++Q +L E LGI+ V + E+G RL +SE+ ++ Sbjct: 12 IGQAIAKYRQASGLTQAQLAEILGISNDAVSRMERGKTIPTVLRLLELSEIFHCEVADLV 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 S +D + ++ + + +L ++ Sbjct: 72 TESSNRSTDQAKVIEKLLQQLDSQQRSELLYLIERL 107 >gi|218904463|ref|YP_002452297.1| DNA-binding protein [Bacillus cereus AH820] gi|229122857|ref|ZP_04252066.1| hypothetical protein bcere0016_31490 [Bacillus cereus 95/8201] gi|218535175|gb|ACK87573.1| DNA-binding protein [Bacillus cereus AH820] gi|228660721|gb|EEL16352.1| hypothetical protein bcere0016_31490 [Bacillus cereus 95/8201] Length = 374 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 ISIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 P + + + + + ++ + + + ++ I+ + Sbjct: 64 LISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMECRKIIKKYYSCFPLLLQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDTDRRIEILEEAM 141 >gi|153938949|ref|YP_001391593.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|168180756|ref|ZP_02615420.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226949661|ref|YP_002804752.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|152934845|gb|ABS40343.1| putative DNA-binding protein [Clostridium botulinum F str. Langeland] gi|182668489|gb|EDT80468.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226842839|gb|ACO85505.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|295319621|gb|ADF99998.1| putative DNA-binding protein [Clostridium botulinum F str. 230613] gi|322806632|emb|CBZ04201.1| transcriptional regulator, Cro/CI family [Clostridium botulinum H04402 065] Length = 78 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +++ R LG++QE+LGE +G++ Q + E G I++V I F F Sbjct: 3 NKLKQFRENLGLTQEQLGELVGVSRQAINAIETGKFEPSIWLAYDIAKVFHDTIEEVFLF 62 Query: 75 DVSPTVCSDISS 86 + S S Sbjct: 63 EESERKSRAEKS 74 >gi|147668743|ref|YP_001213561.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146269691|gb|ABQ16683.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] Length = 210 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 25/76 (32%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R G Q +L + GI+ + E G + I++V + + Sbjct: 4 LGLIIKELRERRGWPQTELADRAGISRSSLATIEIGRSVPKVETSIKIAKVFGMTVEELY 63 Query: 75 DVSPTVCSDISSEENN 90 + E Sbjct: 64 SKAGYETGKTVVETTE 79 >gi|330890951|gb|EGH23612.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] Length = 182 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGGRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVE 60 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLN 104 FF P + + + + ++D ++L Sbjct: 61 FFSEETVPENAAQVVYKASELIDISDGAVTMKLV 94 >gi|317498013|ref|ZP_07956317.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894689|gb|EFV16867.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 136 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 2/94 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + +++ R G +QE+L + + Q + K+EKG++ A L +++VLE +S Sbjct: 4 ENLKIIRKAKGYTQEELAIKIHVVRQTISKWEKGLSVPDADTLSKLADVLEIKVSELL-G 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 S +E + IS L+ NR +I Sbjct: 63 SEIKEETNKNEVAEQLAKISEQLALK-NRRHKRI 95 >gi|315221517|ref|ZP_07863437.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315189351|gb|EFU23046.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 208 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I VG RI+ R+ G + E+ G+ + V +EKG N L I+++ + Sbjct: 5 NIEVGNRIKSIRLDQGATMEEFGKAFNTSKGTVNNWEKGRNLPNKENLLKIAKLGNLSVE 64 Query: 72 FFFDVSPTVC 81 S Sbjct: 65 QLLYGSSARS 74 >gi|291557516|emb|CBL34633.1| Helix-turn-helix [Eubacterium siraeum V10Sc8a] Length = 221 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R G++Q+++ LGI + YEKG + G L ++ + SP Sbjct: 12 LRKERGLTQKQVAADLGIAQALLSHYEKGKRKCGLEFLVKAADYYNVSTDYLLGRSPVSN 71 Query: 82 SDISSEEN 89 I +E + Sbjct: 72 GGIITESD 79 >gi|255029420|ref|ZP_05301371.1| hypothetical protein LmonL_10483 [Listeria monocytogenes LO28] Length = 332 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 38/119 (31%), Gaps = 6/119 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISE 64 + +G +++ R G+S + L + I + + E+G V + +E Sbjct: 23 ILTELGDKLKQARREKGLSLDDLQQITKIQKRYLVAIEEGNYAVMPGKFYARAFIKQYAE 82 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + FD + + +E + + R + +++ Sbjct: 83 AVGLDSATLFDEFESEVPETPQQEVVNNEPTRVQSKRNPMPAQSVGNQANTRNRFFDIL 141 >gi|253572160|ref|ZP_04849564.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838340|gb|EES66427.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 135 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 6/126 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +VG+ ++ R+ LGM QE L LGI+ Q++ K EK + + L I+ L Sbjct: 12 RHVGRNLQRIRVYLGMKQEALAADLGISQQEISKIEK-QDEIEDKLLTQIATALGVSAEV 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D N+ D +P + + KI+EL ++ SE++ Sbjct: 71 IRDFDVERA---IYNINSYKDATISPGATATV--YAHTQQINPLDKIVELYERLLQSERE 125 Query: 133 YRTIEE 138 + + Sbjct: 126 KIELLK 131 >gi|229197048|ref|ZP_04323786.1| transcriptional regulator/TPR domain protein [Bacillus cereus m1293] gi|228586468|gb|EEK44548.1| transcriptional regulator/TPR domain protein [Bacillus cereus m1293] Length = 440 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 3/99 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR RM G++Q +L + + + + E G + +S ++ +S+ L+ + Sbjct: 18 MEIGERIRYVRMHKGLTQGELVSGI-CSITYLSRIESGKIKPSSSFIKKVSKKLDVDSDY 76 Query: 73 FFDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQ 109 + + D T L L +++ Sbjct: 77 LINGNYEEIKITIFNICNKYKKDKSITEADLSLLELYVR 115 >gi|300768439|ref|ZP_07078339.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493957|gb|EFK29125.1| XRE family transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 133 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 17 KRIRLRRM-ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R++ R G++QE+L LG+ + YE+G + L I++ + Sbjct: 17 ERLKELRKKEAGLTQERLAMQLGMAKTTLASYEQGKRQPDLETLSKIADRFSVTTDYLLG 76 Query: 76 VSPTVCSDISSEENNVMDFI 95 + T + ++ DF+ Sbjct: 77 KNGTPKWATKKDTIDLKDFL 96 >gi|227535713|ref|ZP_03965762.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227186680|gb|EEI66747.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 257 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 3/118 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +NVG+R++ R G+S + L +G++ V +YEKG V + ++ L+ Sbjct: 1 MNVGERMKTIRKQKGISADSLAAKIGVSRSTVFRYEKGDIEKVPIEVVAKVANALDIKPE 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + D + + Q+++ + ++ L ++V Sbjct: 61 VLMGLKADTVVDKIHDTVVQLHPERQQKVYTYAE--KQLNEQQNPDNVVSLDEALVER 116 >gi|160891591|ref|ZP_02072594.1| hypothetical protein BACUNI_04044 [Bacteroides uniformis ATCC 8492] gi|270295331|ref|ZP_06201532.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317478327|ref|ZP_07937491.1| helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] gi|156858998|gb|EDO52429.1| hypothetical protein BACUNI_04044 [Bacteroides uniformis ATCC 8492] gi|270274578|gb|EFA20439.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905486|gb|EFV27276.1| helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] Length = 191 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 50/123 (40%), Gaps = 2/123 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R +S E+L + G+ +Q+++ E ++ + L I+ VL + Sbjct: 5 KIVGEKIKSLRESQSISMEELAQRSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRLGT 64 Query: 73 FFDVSPTVCSDI--SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F D + E N + F + + + + + K + + + + +++ Sbjct: 65 FLDDQDENGPVVCRKDESQNSISFSNNAIHSRKHMEYHSLSKSKADRHMEPFIIDVAATD 124 Query: 131 KKY 133 Sbjct: 125 DSD 127 >gi|49188009|ref|YP_031262.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49480382|ref|YP_039162.1| DNA-binding protein; transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165869927|ref|ZP_02214584.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167635333|ref|ZP_02393648.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167640538|ref|ZP_02398801.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170687992|ref|ZP_02879205.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707752|ref|ZP_02898203.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177653033|ref|ZP_02935360.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190567795|ref|ZP_03020707.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196033125|ref|ZP_03100538.1| DNA-binding protein [Bacillus cereus W] gi|196039419|ref|ZP_03106724.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196045749|ref|ZP_03112979.1| DNA-binding protein [Bacillus cereus 03BB108] gi|206976813|ref|ZP_03237716.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217962653|ref|YP_002341227.1| DNA-binding protein [Bacillus cereus AH187] gi|218234129|ref|YP_002369947.1| DNA-binding protein [Bacillus cereus B4264] gi|218906348|ref|YP_002454182.1| DNA-binding protein [Bacillus cereus AH820] gi|225867136|ref|YP_002752514.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227817933|ref|YP_002817942.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228910999|ref|ZP_04074807.1| hypothetical protein bthur0013_51400 [Bacillus thuringiensis IBL 200] gi|228917778|ref|ZP_04081318.1| hypothetical protein bthur0012_49810 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930173|ref|ZP_04093182.1| hypothetical protein bthur0010_48550 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936457|ref|ZP_04099255.1| hypothetical protein bthur0009_48940 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948890|ref|ZP_04111164.1| hypothetical protein bthur0007_50130 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229020383|ref|ZP_04177139.1| hypothetical protein bcere0030_48700 [Bacillus cereus AH1273] gi|229026612|ref|ZP_04182955.1| hypothetical protein bcere0029_48820 [Bacillus cereus AH1272] gi|229124679|ref|ZP_04253860.1| hypothetical protein bcere0016_49600 [Bacillus cereus 95/8201] gi|229141900|ref|ZP_04270426.1| hypothetical protein bcere0013_49870 [Bacillus cereus BDRD-ST26] gi|229153326|ref|ZP_04281504.1| hypothetical protein bcere0011_48560 [Bacillus cereus m1550] gi|229158737|ref|ZP_04286795.1| hypothetical protein bcere0010_49100 [Bacillus cereus ATCC 4342] gi|229187382|ref|ZP_04314525.1| hypothetical protein bcere0004_49170 [Bacillus cereus BGSC 6E1] gi|229199289|ref|ZP_04325956.1| hypothetical protein bcere0001_47910 [Bacillus cereus m1293] gi|229604287|ref|YP_002869393.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254686401|ref|ZP_05150260.1| dna-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724400|ref|ZP_05186184.1| dna-binding protein [Bacillus anthracis str. A1055] gi|254735606|ref|ZP_05193313.1| dna-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254744306|ref|ZP_05201986.1| dna-binding protein [Bacillus anthracis str. Kruger B] gi|254755604|ref|ZP_05207637.1| dna-binding protein [Bacillus anthracis str. Vollum] gi|254757059|ref|ZP_05209087.1| dna-binding protein [Bacillus anthracis str. Australia 94] gi|301056635|ref|YP_003794846.1| DNA-binding transcriptional regulator [Bacillus anthracis CI] gi|49181936|gb|AAT57312.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49331938|gb|AAT62584.1| DNA-binding protein; transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164714250|gb|EDR19770.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167511581|gb|EDR86964.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529376|gb|EDR92128.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170127309|gb|EDS96185.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170668101|gb|EDT18851.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172081808|gb|EDT66878.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190561211|gb|EDV15184.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195994554|gb|EDX58509.1| DNA-binding protein [Bacillus cereus W] gi|196023580|gb|EDX62257.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196029579|gb|EDX68181.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|206744948|gb|EDZ56352.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217065847|gb|ACJ80097.1| DNA-binding protein [Bacillus cereus AH187] gi|218162086|gb|ACK62078.1| DNA-binding protein [Bacillus cereus B4264] gi|218534878|gb|ACK87276.1| DNA-binding protein [Bacillus cereus AH820] gi|225790661|gb|ACO30878.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227003606|gb|ACP13349.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228584149|gb|EEK42300.1| hypothetical protein bcere0001_47910 [Bacillus cereus m1293] gi|228596086|gb|EEK53763.1| hypothetical protein bcere0004_49170 [Bacillus cereus BGSC 6E1] gi|228624721|gb|EEK81490.1| hypothetical protein bcere0010_49100 [Bacillus cereus ATCC 4342] gi|228629930|gb|EEK86581.1| hypothetical protein bcere0011_48560 [Bacillus cereus m1550] gi|228641515|gb|EEK97820.1| hypothetical protein bcere0013_49870 [Bacillus cereus BDRD-ST26] gi|228658774|gb|EEL14433.1| hypothetical protein bcere0016_49600 [Bacillus cereus 95/8201] gi|228734697|gb|EEL85348.1| hypothetical protein bcere0029_48820 [Bacillus cereus AH1272] gi|228740918|gb|EEL91160.1| hypothetical protein bcere0030_48700 [Bacillus cereus AH1273] gi|228810782|gb|EEM57129.1| hypothetical protein bthur0007_50130 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823289|gb|EEM69123.1| hypothetical protein bthur0009_48940 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829458|gb|EEM75086.1| hypothetical protein bthur0010_48550 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841883|gb|EEM86990.1| hypothetical protein bthur0012_49810 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228848654|gb|EEM93500.1| hypothetical protein bthur0013_51400 [Bacillus thuringiensis IBL 200] gi|229268695|gb|ACQ50332.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|300378804|gb|ADK07708.1| DNA-binding protein; transcriptional regulator [Bacillus cereus biovar anthracis str. CI] gi|324329114|gb|ADY24374.1| dna-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 65 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 5 NKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|37676118|ref|NP_936514.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|37200659|dbj|BAC96484.1| predicted transcriptional regulator [Vibrio vulnificus YJ016] Length = 507 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 7/73 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G L+ I+EV Sbjct: 13 FLGTKIRNLRKNNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEVF 72 Query: 67 ESPISFFFDVSPT 79 + ++F D P Sbjct: 73 QKDPAWFLDDEPE 85 >gi|332981127|ref|YP_004462568.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698805|gb|AEE95746.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 74 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 29/69 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+++ R G + +L + G++ + E + L I+ LE ++F Sbjct: 1 MIGKKLKSIRNKRGYTLRQLEKLSGVSHGFLCDIEHDRSDPSLETLHKIANALEIEPAYF 60 Query: 74 FDVSPTVCS 82 + + T Sbjct: 61 LNNANTDEQ 69 >gi|330960406|gb|EGH60666.1| DNA-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 189 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 1/100 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV +V + +R R +SQ L + G++ + + E G V + L ++E L+ Sbjct: 10 PVLQHVSQNVRRLRNAADLSQTALADKSGVSRRMLVAIEAGEKNVSLATLDRVAEALDVA 69 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 S + +E + L L R + Sbjct: 70 FSDLIQAPDSRDHSRINELAWEGTCAGSKAVL-LARAIAR 108 >gi|327468544|gb|EGF14023.1| hypothetical protein HMPREF9386_1402 [Streptococcus sanguinis SK330] Length = 88 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ RI+ R G+SQE L + LG++ Q V K+E + ++ +S+ + Sbjct: 1 MNLSDRIQYLRKARGISQEGLADQLGVSRQAVSKWESEQSMPDLDKIISMSDYFAVTTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 V + S Sbjct: 61 LLKGIEPVVQKEEEQSIKYRRIASN 85 >gi|291550061|emb|CBL26323.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 66 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 21/57 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + IR R +Q+++ L I KYE G V +++ I + Sbjct: 4 ENIRNLREDNDKTQKEVAAYLNIKQTTYSKYELGKINVPIDVFIKLADYYTVSIDYL 60 >gi|291545610|emb|CBL18718.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 118 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 45/111 (40%), Gaps = 4/111 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 1 MPIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + + E N M + + ++ + VR+ Sbjct: 61 HISLDTLIN----PDVSLEDEGVNQMKMLYSSCPPEMRDTLLHHTQETVRE 107 >gi|289623964|ref|ZP_06456918.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289651241|ref|ZP_06482584.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298487604|ref|ZP_07005645.1| Transcriptional regulator, Cro/CI family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157696|gb|EFH98775.1| Transcriptional regulator, Cro/CI family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330867797|gb|EGH02506.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330953968|gb|EGH54228.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae Cit 7] Length = 189 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 1/109 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M PV +V + +R R +SQ L E G++ + + E G V + L Sbjct: 1 MHKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLD 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++E LE S +E + + L L R + Sbjct: 61 RVAEALEVAFSDLIQAPENRDYSRINELAWAGTIVGSKAVL-LARAVAR 108 >gi|289706453|ref|ZP_06502809.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] gi|289556824|gb|EFD50159.1| helix-turn-helix domain-containing protein [Micrococcus luteus SK58] Length = 91 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 4/90 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + KR+R R G+SQEKL E + + ++ YE G + + I+ VL P Sbjct: 1 MIPKRLRDARKNAGISQEKLAELVDVEGINIRSRISSYEVGRVEPSFNLMVKIAAVLNYP 60 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPD 99 +F+ + + I N + P Sbjct: 61 ECYFYTIDDALAQTILEIHLNKNNSSHNPY 90 >gi|229188069|ref|ZP_04315155.1| HTH-type transcriptional regulator ansR [Bacillus cereus BGSC 6E1] gi|228595404|gb|EEK53138.1| HTH-type transcriptional regulator ansR [Bacillus cereus BGSC 6E1] Length = 127 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 8/125 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R S + + LGI YE G L I+++ + + + Sbjct: 6 ERLSELRKSKKWSLQDTADQLGIAKSTYAGYETGYRWPSLQSLSKIADLFNTSVDYILGR 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + V S+ E +M + + + IIE + + S + Sbjct: 66 TDDVRSENVIELAEIMKNPDKTISID----GESLSTDE----IIEFIAFMRSKRELKSKR 117 Query: 137 EEECM 141 EE + Sbjct: 118 LEELL 122 >gi|218134569|ref|ZP_03463373.1| hypothetical protein BACPEC_02472 [Bacteroides pectinophilus ATCC 43243] gi|217989954|gb|EEC55965.1| hypothetical protein BACPEC_02472 [Bacteroides pectinophilus ATCC 43243] Length = 268 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 10/133 (7%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R GMSQ++L E + +T Q V ++E G L+ +S+ I+ Sbjct: 14 ILQLRTERGMSQDELAEKIMVTRQAVSRWENGETIPNTETLKLLSKEFNVSINTLLGAPR 73 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK------VRQKIIEL-VRSIVSS-- 129 + I LN + + ++I++ V+++V+ Sbjct: 74 RLICQCCGMPLEDDSIIGRDRDGSLNEDYCKWCYADGTYTYSNMDELIDVCVKNMVNENI 133 Query: 130 -EKKYRTIEEECM 141 E++ R+ + + Sbjct: 134 SEEQARSYLKNLL 146 >gi|169349906|ref|ZP_02866844.1| hypothetical protein CLOSPI_00645 [Clostridium spiroforme DSM 1552] gi|169293474|gb|EDS75607.1| hypothetical protein CLOSPI_00645 [Clostridium spiroforme DSM 1552] Length = 114 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/97 (14%), Positives = 36/97 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI R +++E+L + +G++ + + YE+G L+ + E + Sbjct: 6 GERISYLRCECNLTREELCKIIGVSKRTIVAYEQGTRDPSVKTLRALVEYFNVSSDYILG 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + + + + + + I+D Sbjct: 66 YTNKPLRLDAICKEEKSYILLPKTIQESKAKYNSIND 102 >gi|167771950|ref|ZP_02444003.1| hypothetical protein ANACOL_03323 [Anaerotruncus colihominis DSM 17241] gi|167665748|gb|EDS09878.1| hypothetical protein ANACOL_03323 [Anaerotruncus colihominis DSM 17241] Length = 168 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 55/132 (41%), Gaps = 6/132 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R M+Q + LGI + E G + ++ I + + D Sbjct: 8 ERLKQIRAKKKMNQADFAKSLGIGQSTLAMMEVGKREISERHIKTICAIFGVNECWLRDG 67 Query: 77 SPTVCSDISS--EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS---EK 131 + ++ +S + V ++ P ++ ++ + ++ R+ I + +R +V + ++ Sbjct: 68 VGDMFTETNSTVISSLVDEYDLDPLDQKIVECYLNLGSLQ-RKVIKDYLRKLVDAVLSDE 126 Query: 132 KYRTIEEECMVE 143 Y E+ + E Sbjct: 127 NYDEYREDYIKE 138 >gi|126698088|ref|YP_001086985.1| putative conjugative transposon regulatory protein [Clostridium difficile 630] gi|256957643|ref|ZP_05561814.1| conserved hypothetical protein [Enterococcus faecalis DS5] gi|78064635|gb|ABB18306.1| Orf9 [Enterococcus faecium] gi|115249525|emb|CAJ67341.1| Transcriptional regulator, HTH-type Tn5397,CTn3-Orf9 [Clostridium difficile] gi|256948139|gb|EEU64771.1| conserved hypothetical protein [Enterococcus faecalis DS5] Length = 117 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 1/106 (0%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D G I+ RM G+++E++G + I + + E L + Sbjct: 2 RKKEDKFDFRAFGLAIKEARMKRGLTREQVGALIEIDPRYLTNIENKGQHPSIQVLYDLV 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +L+ + FF + + + T L L Sbjct: 62 SLLDVSVDEFFLPHNDLTKSTRRLQVEKLLDNFTDKELSLIEALAS 107 >gi|254975392|ref|ZP_05271864.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092781|ref|ZP_05322259.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255100891|ref|ZP_05329868.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306781|ref|ZP_05350952.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255314521|ref|ZP_05356104.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517196|ref|ZP_05384872.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650302|ref|ZP_05397204.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|255655775|ref|ZP_05401184.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|306520271|ref|ZP_07406618.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] Length = 92 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +I++ R LG++QE+LG +G + Q + E G N IS + PI F F Sbjct: 8 NKIKILREKLGLTQEQLGRLVGTSRQAINAIETGKNEPSIWLAYDISRIFNEPIESVFLF 67 Query: 75 DVSPTVCSDISSEENNV 91 + S S Sbjct: 68 EESERKSRAQISRGEYY 84 >gi|325263078|ref|ZP_08129813.1| DNA-binding protein [Clostridium sp. D5] gi|324031471|gb|EGB92751.1| DNA-binding protein [Clostridium sp. D5] Length = 207 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 35/63 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I++ R + G++Q++L E +GI Q + K E+G+N LQ ++E+L+ + Sbjct: 11 LGHNIQVIRKLKGLTQQELSEQIGINLQSLSKIERGINYPTFDTLQKLAEILDVTPNELL 70 Query: 75 DVS 77 Sbjct: 71 AGE 73 >gi|310766355|gb|ADP11305.1| hypothetical protein EJP617_16240 [Erwinia sp. Ejp617] gi|310766360|gb|ADP11310.1| hypothetical protein EJP617_16290 [Erwinia sp. Ejp617] gi|310768308|gb|ADP13258.1| hypothetical protein EJP617_35770 [Erwinia sp. Ejp617] Length = 129 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +R+ R G+SQ+ + + +GI +KYE G + L+ I+ L F Sbjct: 11 MSLSERLFELRRQHGLSQQAMADAVGIHANSWKKYETGQAQPSIDILKKIATALHVSTDF 70 Query: 73 FFDVSPTVCSD 83 + + Sbjct: 71 LLFDAHERVPE 81 >gi|297617503|ref|YP_003702662.1| XRE family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145340|gb|ADI02097.1| transcriptional regulator, XRE family [Syntrophothermus lipocalidus DSM 12680] Length = 70 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 21/54 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 R+R R G++QE L + ++ Q + E G ++ V I Sbjct: 3 NRLRALREERGLTQEDLASMVDVSRQTIISLEHGRYNPSIILAHKLARVFGLTI 56 >gi|294086041|ref|YP_003552801.1| putative XRE family transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292665616|gb|ADE40717.1| putative transcriptional regulator, XRE family [Candidatus Puniceispirillum marinum IMCC1322] Length = 486 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 1/124 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG ++R R +G+SQ + E L I+ + E + + L + + + Sbjct: 5 ILVGHKLRRFRQSIGLSQTAMSEALDISPSYLNLLEHNQRPLTVTLLLKLGNSFDIDLKS 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F + SE F + + I R +I+L + + Sbjct: 65 FAEDDSQSLIADMSEIFTDPLFTGEAVSRRELQDLISAAPGAAR-SVIKLFHAYRKVRDE 123 Query: 133 YRTI 136 ++ Sbjct: 124 LQSS 127 >gi|150005248|ref|YP_001299992.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|254883715|ref|ZP_05256425.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294777357|ref|ZP_06742809.1| DNA-binding protein [Bacteroides vulgatus PC510] gi|319643440|ref|ZP_07998063.1| transcriptional regulator [Bacteroides sp. 3_1_40A] gi|149933672|gb|ABR40370.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|254836508|gb|EET16817.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|294448825|gb|EFG17373.1| DNA-binding protein [Bacteroides vulgatus PC510] gi|317384845|gb|EFV65801.1| transcriptional regulator [Bacteroides sp. 3_1_40A] Length = 191 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R +S +L G+ +Q+++ E V+ + L I+ L + Sbjct: 5 KIVGEKIKSLRETKEISVAELAVRSGLAEEQIERIENNVDLPSLAPLIKIARALGVRLGT 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 F D + I ++ + + + + L Sbjct: 65 FLDDQEEQGAVICRKQESEDTISFSNNAMDL 95 >gi|119503754|ref|ZP_01625836.1| transcriptional regulator, Cro/CI family protein [marine gamma proteobacterium HTCC2080] gi|119460262|gb|EAW41355.1| transcriptional regulator, Cro/CI family protein [marine gamma proteobacterium HTCC2080] Length = 66 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R +Q L L +T Q V EKG I+ V + PI F Sbjct: 3 NRLKVLRAEHDWTQADLAAQLNVTRQTVNAIEKGKYDPSLPLAFKIAGVFQMPIDHIF 60 >gi|88797514|ref|ZP_01113103.1| hypothetical protein MED297_10191 [Reinekea sp. MED297] gi|88779686|gb|EAR10872.1| hypothetical protein MED297_10191 [Reinekea sp. MED297] Length = 507 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 7/76 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G L+ I+ V Sbjct: 13 FLGTKIRNLRKQNNLTMEDLSARCIRVDPDSAPSVSYLSMIERGKRTPSLDMLEVIAAVF 72 Query: 67 ESPISFFFDVSPTVCS 82 + +F D P + Sbjct: 73 QKDADWFLDDEPQAEA 88 >gi|326795756|ref|YP_004313576.1| helix-turn-helix domain protein [Marinomonas mediterranea MMB-1] gi|326546520|gb|ADZ91740.1| helix-turn-helix domain protein [Marinomonas mediterranea MMB-1] Length = 203 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKR++ R+ G + E++ + GI + K E + +Q + + L + Sbjct: 22 LELGKRVKEIRLTKGWTLEEVSQRTGIARSTLSKIENDQVSPSFTIVQKLIKGLGMDLPQ 81 Query: 73 FF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 F D S DI+ + ST + LN + V + ++ RSI Sbjct: 82 LFVESSDQSIAGRRDITRKGKGEPHPTSTYEHELLNFSISRKKMVPFKTRVR--ARSIEE 139 Query: 129 SEKKYRTIEEECMV 142 ++ R EE ++ Sbjct: 140 FKEWIRHDGEEFLL 153 >gi|314937137|ref|ZP_07844484.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80] gi|313655756|gb|EFS19501.1| DNA-binding protein [Staphylococcus hominis subsp. hominis C80] Length = 292 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 39/77 (50%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K + + VGKRI+ R G++QE G+ G + V +EKG++ ASRL+ Sbjct: 1 MLRRKIMYSYNKEQVGKRIKSIRQQKGLTQESFGKLFGASKGNVATWEKGISLPNASRLR 60 Query: 61 HISEVLESPISFFFDVS 77 I++++ + Sbjct: 61 EIADLVSITVEELLYGE 77 >gi|306821502|ref|ZP_07455104.1| cro/CI family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550460|gb|EFM38449.1| cro/CI family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 73 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 26/71 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ ++ R + G++QE+ + L ++ Q + E G I+ I Sbjct: 1 MHLKNKLDELRKLKGLTQEEFAKKLRVSRQTISAIENGKYNPSLDLAFEIAIYFNKTIEE 60 Query: 73 FFDVSPTVCSD 83 F + Sbjct: 61 IFTYEKEDNHE 71 >gi|291521518|emb|CBK79811.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 118 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 37/77 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 1 MPIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVL 60 Query: 67 ESPISFFFDVSPTVCSD 83 + + ++ ++ Sbjct: 61 HISLDTLINPDISLENE 77 >gi|256761630|ref|ZP_05502210.1| predicted protein [Enterococcus faecalis T3] gi|256682881|gb|EEU22576.1| predicted protein [Enterococcus faecalis T3] Length = 250 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + ++ + ++ Sbjct: 84 WLLYGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMGRLSEEQL 125 >gi|240948598|ref|ZP_04752971.1| XRE family transcriptional regulator [Actinobacillus minor NM305] gi|240297106|gb|EER47677.1| XRE family transcriptional regulator [Actinobacillus minor NM305] Length = 114 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 42/96 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R +G++Q +L E LGI+ V + E+G + RL +SE+ ++ Sbjct: 12 IGRAISKYRQAVGLTQAQLAEILGISNDAVSRMERGKSVPSVLRLLELSEIFGCEVADLL 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 S D + + + + + +L +I Sbjct: 72 TESSNRSIDQARKLELLFHHLEDGERSELVALIERI 107 >gi|196033371|ref|ZP_03100783.1| DNA-binding protein [Bacillus cereus W] gi|195993805|gb|EDX57761.1| DNA-binding protein [Bacillus cereus W] Length = 403 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDDDEIVELIQ 74 >gi|167749663|ref|ZP_02421790.1| hypothetical protein EUBSIR_00621 [Eubacterium siraeum DSM 15702] gi|167657416|gb|EDS01546.1| hypothetical protein EUBSIR_00621 [Eubacterium siraeum DSM 15702] Length = 302 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 3/96 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++++ R G++QE+L LG+T Q V K+E G L I+++ + I + Sbjct: 7 KQLQMLRKQSGITQEQLAAKLGVTAQAVSKWENGSY-PDGDLLPKIADIFDVSIDNLYGR 65 Query: 77 SPTVCSDISSEENNVMDFISTPD--GLQLNRYFIQI 110 CS N++ + + ++ I Sbjct: 66 GEERCSFEQQVVNHMQAIADSSQDSCAEWLENYLNI 101 >gi|167589656|ref|ZP_02382044.1| transcriptional regulator, XRE family protein [Burkholderia ubonensis Bu] Length = 76 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G +R R SQE+L E G+ V + E+G + I+ + IS Sbjct: 6 RHFGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASLVTVDKIARAFDVSIST 65 Query: 73 FFDVSPTV 80 + Sbjct: 66 LLSGTADA 73 >gi|15896879|ref|NP_350228.1| transcription regulator [Clostridium acetobutylicum ATCC 824] gi|15026747|gb|AAK81568.1|AE007860_2 Predicted transcriptional regulator, containing DNA-binding domain of xre family [Clostridium acetobutylicum ATCC 824] gi|325511054|gb|ADZ22690.1| transcriptional regulator, containing DNA-binding domain of xre family [Clostridium acetobutylicum EA 2018] Length = 232 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 28/72 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R + ++Q+++ E G+ + YEK L + ++ + Sbjct: 4 IGERLKYLRKLNNLTQKQVAEKTGVQRGNISHYEKNDFLPSRVALISFANFFKTNYDWIV 63 Query: 75 DVSPTVCSDISS 86 + I Sbjct: 64 YGKGAIPKSIDE 75 >gi|331092438|ref|ZP_08341263.1| hypothetical protein HMPREF9477_01906 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401281|gb|EGG80870.1| hypothetical protein HMPREF9477_01906 [Lachnospiraceae bacterium 2_1_46FAA] Length = 190 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G RI+ R + + L E G++ + + E+G+ + L IS+VL+ Sbjct: 2 DTNAIIGLRIKNLRTEKKYTLKYLSENTGLSIGFLSQLERGMTSIAIDSLDKISKVLDVE 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 +S FF + + P+ ++ +++ + +++EL+ ++ Sbjct: 62 LSSFFTTNIKPNDVHIMRRYEQKSTVVNPEIIEHALT-NHVEEFDLLPRLVELMPALQDE 120 >gi|307278430|ref|ZP_07559505.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306504936|gb|EFM74131.1| helix-turn-helix protein [Enterococcus faecalis TX0860] Length = 232 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + ++ + ++ Sbjct: 66 WLLYGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMGRLSEEQL 107 >gi|303326179|ref|ZP_07356622.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302864095|gb|EFL87026.1| DNA-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 189 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 28/81 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R + E L + ++ + + + E G +Q ++ L + F Sbjct: 7 IGSRIRSFREEREIDLETLSQDTNLSVEFLNQLENGEIYPSIGPMQKLARALGVRLGTFL 66 Query: 75 DVSPTVCSDISSEENNVMDFI 95 D T I D Sbjct: 67 DDQYTRDPIIGRIGGEGGDPA 87 >gi|302522960|ref|ZP_07275302.1| regulatory protein [Streptomyces sp. SPB78] gi|302431855|gb|EFL03671.1| regulatory protein [Streptomyces sp. SPB78] Length = 204 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 31/87 (35%), Gaps = 1/87 (1%) Query: 1 MVGNKKIPN-PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M + P+ + + V +R R G++ E + ++ + + E G + L Sbjct: 1 MSTEPEGPSGELAVTVAPHLRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPML 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISS 86 ++ + +S +P + Sbjct: 61 LALARTYGTTVSELLGETPAGPGSVVR 87 >gi|255971326|ref|ZP_05421912.1| predicted protein [Enterococcus faecalis T1] gi|256617744|ref|ZP_05474590.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256959999|ref|ZP_05564170.1| predicted protein [Enterococcus faecalis Merz96] gi|257083788|ref|ZP_05578149.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|257089285|ref|ZP_05583646.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] gi|255962344|gb|EET94820.1| predicted protein [Enterococcus faecalis T1] gi|256597271|gb|EEU16447.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256950495|gb|EEU67127.1| predicted protein [Enterococcus faecalis Merz96] gi|256991818|gb|EEU79120.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|256998097|gb|EEU84617.1| cro/CI family transcriptional regulator [Enterococcus faecalis CH188] Length = 250 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + ++ + ++ Sbjct: 84 WLLYGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMGRLSEEQL 125 >gi|228934608|ref|ZP_04097442.1| hypothetical protein bthur0009_30630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825001|gb|EEM70799.1| hypothetical protein bthur0009_30630 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 374 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 ISIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 P + + + + + ++ + + + ++ I+ + Sbjct: 64 LISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMECRKIIKKYYSCFPLLLQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDTDRRIEILEEAM 141 >gi|228961481|ref|ZP_04123092.1| Prophage Lp3 protein 2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798195|gb|EEM45197.1| Prophage Lp3 protein 2 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 206 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 34/66 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KRI++ R G+SQ++L E L +T Q V YEKG + L IS +L P+ + + Sbjct: 2 KRIKIARQRKGVSQKELAEKLNMTQQAVSYYEKGSRVPDENILLEISRILTVPVEYLTEE 61 Query: 77 SPTVCS 82 + Sbjct: 62 TNDPEG 67 >gi|227523447|ref|ZP_03953496.1| possible DNA-binding protein [Lactobacillus hilgardii ATCC 8290] gi|227089374|gb|EEI24686.1| possible DNA-binding protein [Lactobacillus hilgardii ATCC 8290] Length = 117 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 41/86 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R+ G SQ+K+ + L +T Q + +E G +R L +S+V + P+ F + Sbjct: 7 QLKKARIKKGYSQQKVADELQVTRQSISSWENGHSRPDLYNLTLLSKVYDEPLDNFVKDN 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQL 103 + I S+ + F + +L Sbjct: 67 HSFDLQIESDREEFLRFFNLLQQKEL 92 >gi|225376643|ref|ZP_03753864.1| hypothetical protein ROSEINA2194_02285 [Roseburia inulinivorans DSM 16841] gi|225211526|gb|EEG93880.1| hypothetical protein ROSEINA2194_02285 [Roseburia inulinivorans DSM 16841] Length = 101 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G++I R S KL GI+ ++ E G L +I E L + Sbjct: 1 MNIGEKITYYRKKKNYSVNKLANLAGISQSYLRDIELGNKNPTIEFLSYICEALNISLKD 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|166153474|ref|YP_001653988.1| transcriptional regulator [Bacillus thuringiensis] gi|165875313|gb|ABY68470.1| putative transcriptional regulator [Bacillus thuringiensis] Length = 188 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 31/79 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E + ++ Q + +E + L +S + + + Sbjct: 1 MNLSKQIKKYRDREGFSQEDLAEKIYVSRQTISNWENERSYPDIHNLLLLSVLFDVSLDD 60 Query: 73 FFDVSPTVCSDISSEENNV 91 + + + Sbjct: 61 LVKGDMEMMKNNLQQVKFN 79 >gi|119433803|gb|ABL74963.1| TlmR2 [Streptoalloteichus hindustanus] Length = 399 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 41/125 (32%), Gaps = 13/125 (10%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P D ++G+ I R G++Q +L I+ +QK E G S + ++ L Sbjct: 1 MPLDDDTHIGRTIARFRKAAGLNQHQLAARANISLSLLQKVEIGDRAANHSTIAGVARAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ---IDDVKVRQKIIELV 123 P + ++ + R ++ + + + +L Sbjct: 61 HLPPEKL----------TGQPYVDHHGDEASRRHVDAIRAVLRRYDLPSDSPVRPVTDLA 110 Query: 124 RSIVS 128 + Sbjct: 111 ADVAE 115 >gi|73663641|ref|YP_302422.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72496156|dbj|BAE19477.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 117 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G + + +R SQ++L E L I+ Q + K+E L +S++ + + Sbjct: 1 MEIGSKTKEKREQKHWSQDELAEILNISRQSISKWELNKVYPSIDMLIKMSDLFDISLDE 60 Query: 73 FFDVSPTVCSDISS 86 I Sbjct: 61 LIKGDKQFKKTIIE 74 >gi|86141620|ref|ZP_01060166.1| hypothetical protein MED217_06362 [Leeuwenhoekiella blandensis MED217] gi|85832179|gb|EAQ50634.1| hypothetical protein MED217_06362 [Leeuwenhoekiella blandensis MED217] Length = 193 Score = 46.0 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R G++ + ++ + + E G L +I L++ ++ FF Sbjct: 8 IGKRIREIRKEKGLTINTVASSAEVSNGLISRVENGRTIPSLPVLLNIIAALDTEVASFF 67 Query: 75 DVSP 78 + P Sbjct: 68 NSLP 71 >gi|290894052|ref|ZP_06557026.1| phage protein [Listeria monocytogenes FSL J2-071] gi|290556396|gb|EFD89936.1| phage protein [Listeria monocytogenes FSL J2-071] Length = 100 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 33/94 (35%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R +QE L LGI+ E G N + ++ E + Sbjct: 3 GKKLKKLRNKTNKTQEDLANILGISRAAYSHIENGRNEPDMETIVKLANYFEVSTDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + SD+ + + ++ FI+ Sbjct: 63 RNEIGNSDLLAAHIDDDLTEEERIEIEKYLKFIR 96 >gi|254510314|ref|ZP_05122381.1| transcriptional regulator, XRE family with cupin sensor [Rhodobacteraceae bacterium KLH11] gi|221534025|gb|EEE37013.1| transcriptional regulator, XRE family with cupin sensor [Rhodobacteraceae bacterium KLH11] Length = 211 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 3/82 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + + R++ R G+S E + G++ V + E+G + S L Sbjct: 25 MTES---ADDILNLLPARLKEARRAKGLSLEAVANLSGVSRSMVSQIERGESSPTISTLW 81 Query: 61 HISEVLESPISFFFDVSPTVCS 82 +++ L+ + D + T Sbjct: 82 NLTRALQVDFAGLLDGAKTNDQ 103 >gi|108759575|ref|YP_630140.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108463455|gb|ABF88640.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 124 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 42/110 (38%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ P+ + +G+ +R R+ G+ Q ++ + I+ + E+G+ L + Sbjct: 14 KRRARPLPVILGEALREARLRAGLQQTEVATLINISRNAYSRLERGLMLPSVPTLYRLCT 73 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + + S ++ S+ + + + IQ+ + Sbjct: 74 AVCTTPNELLGFSYSLPPGTSAIAKDALRRRVRQLNGRQALALIQLLSGE 123 >gi|42780467|ref|NP_977714.1| transcriptional regulator SinR [Bacillus cereus ATCC 10987] gi|42736386|gb|AAS40322.1| transcriptional regulator SinR [Bacillus cereus ATCC 10987] Length = 107 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T + + SE V D +S+ + R F Sbjct: 61 LLHDETTRENHLDSEWTQLVKDAMSSGVSKEQFREF 96 >gi|330817330|ref|YP_004361035.1| DNA-binding protein [Burkholderia gladioli BSR3] gi|327369723|gb|AEA61079.1| DNA-binding protein [Burkholderia gladioli BSR3] Length = 192 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 3/104 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DV 76 R++L R LG+S + L E G+T + K E+G++ + ++ L + F Sbjct: 5 RLKLLRKQLGLSLQDLAERAGLTKSYLSKVERGLSTPSVAVAMQLATALHVEVGQLFASD 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + + DG + I R++++ Sbjct: 65 EDEKAITVVRAGERIRVGGGSEDGAS--AGYEVIAAEAGRKRLL 106 >gi|326424421|ref|NP_763514.2| putative transcriptional regulator [Vibrio vulnificus CMCP6] gi|319999811|gb|AAO08504.2| Predicted transcriptional regulator [Vibrio vulnificus CMCP6] Length = 507 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 7/73 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G L+ I+EV Sbjct: 13 FLGTKIRNLRKNNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEVF 72 Query: 67 ESPISFFFDVSPT 79 + ++F D P Sbjct: 73 QKDPAWFLDDEPE 85 >gi|251772691|gb|EES53255.1| putative phage repressor [Leptospirillum ferrodiazotrophum] Length = 227 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R +SQ L E G+ Q + E + L +++ L + Sbjct: 2 MTLGDRLKEARTKRKLSQTALSEKSGVPQQTIHAIENKKAK-STGHLFPLAKALHINPEW 60 Query: 73 FFDVSPTVCSDISSEE 88 + E Sbjct: 61 LSTGEGEMERKPLEES 76 >gi|228918176|ref|ZP_04081680.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841456|gb|EEM86595.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 184 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 1/129 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINVGQKIMAFRKNAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF + T ++ N G D + ++ L+ SS + Sbjct: 63 NFF-LEDTNTEELVVRANQRKKITFPESGNVSYELLSPNLDGSLELALMNLLPQTASSIE 121 Query: 132 KYRTIEEEC 140 EE Sbjct: 122 PVAHKGEEI 130 >gi|227500603|ref|ZP_03930652.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] gi|227217190|gb|EEI82534.1| conserved hypothetical protein [Anaerococcus tetradius ATCC 35098] Length = 129 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/123 (11%), Positives = 43/123 (34%), Gaps = 5/123 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFFD 75 +++ R + ++QE L + ++ + + +YE G ++ + ++E L++ + Sbjct: 5 NKVKELRELKKLTQEDLAKLCNVSTKTISRYELGESKPRYRKTYDLLAEHLDTTHDYLVT 64 Query: 76 VSPTVCSDISSEENNVMDFISTPD--GLQLNRYFIQIDDVKVRQKIIELVRS--IVSSEK 131 + G+ Q+ + R + + + I E Sbjct: 65 DEDEFILKARENFGENGAKDAQDMINGVIGLMAGGQLPENDKRAILDAISEAYYIAKMEN 124 Query: 132 KYR 134 + + Sbjct: 125 EKK 127 >gi|254465481|ref|ZP_05078892.1| DNA-binding protein [Rhodobacterales bacterium Y4I] gi|206686389|gb|EDZ46871.1| DNA-binding protein [Rhodobacterales bacterium Y4I] Length = 182 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 42/131 (32%), Gaps = 6/131 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + I+ R G S L GI + + E G L ++ L P+S Sbjct: 7 MIAAAIQRERNRAGKSLSALAAQAGIAKSTLSQLEAGNGNPSVETLWALAAALGVPLSLL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 F+ + I + E ++ + L + VR+ I +V + E + Sbjct: 67 FETEAPSTTLIRAAEGEPLESEQSDFTAVLL---SRCPS-NVRRDIYRVV--MQPGEARR 120 Query: 134 RTIEEECMVEQ 144 VE Sbjct: 121 AQPHPRGTVEH 131 >gi|218902898|ref|YP_002450732.1| DNA-binding protein [Bacillus cereus AH820] gi|228914360|ref|ZP_04077975.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|218536358|gb|ACK88756.1| DNA-binding protein [Bacillus cereus AH820] gi|228845354|gb|EEM90390.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 403 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDDDEIVELIQ 74 >gi|134046073|ref|YP_001097559.1| MerR family transcriptional regulator [Methanococcus maripaludis C5] gi|132663698|gb|ABO35344.1| transcriptional regulator, MerR family [Methanococcus maripaludis C5] Length = 192 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 30/74 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG +I+ R MS E+L + + ++ E G + + I+ L + F Sbjct: 6 HVGIKIKQTRERQNMSIEELAKASNSSVNLIESLENGDLVPSLTPIFKIARALGVRLGTF 65 Query: 74 FDVSPTVCSDISSE 87 D +P ++ Sbjct: 66 LDDAPQSGPVLTKS 79 >gi|90413760|ref|ZP_01221748.1| Hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90325229|gb|EAS41726.1| Hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 126 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +IR R ++Q + + LG+ Q E G S L I+++ P+ +F Sbjct: 16 KIREARERKDITQVAMAKALGLARQTYLDLESGKTEPRISTLVSIADITGRPLIWFIYED 75 Query: 78 PTVCSDISSEE 88 S + Sbjct: 76 EGPISSEDKND 86 >gi|330467774|ref|YP_004405517.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810745|gb|AEB44917.1| transcriptional regulator, XRE family protein [Verrucosispora maris AB-18-032] Length = 178 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R M+ +L ++ + + E G S L+ +++V ++ I+ Sbjct: 1 MLGDRLRDLRQQHSMTLRQLATAADVSPALLSQIENGATDPSLSTLRKLAQVFDTSIAEL 60 Query: 74 FDVSPTVC 81 F Sbjct: 61 FSEPEAPA 68 >gi|309776192|ref|ZP_07671183.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308916143|gb|EFP61892.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 118 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 36/77 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 1 MPIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVL 60 Query: 67 ESPISFFFDVSPTVCSD 83 + + ++ + Sbjct: 61 HISLDTLINPDISLEDE 77 >gi|308069208|ref|YP_003870813.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305858487|gb|ADM70275.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681] Length = 179 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 30/75 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R +S +++ E G++ + + E + L I+ L+ P++F Sbjct: 3 IGCNIRAARKRKNLSIQQICERTGLSQGFMSQVENNKTSPSIATLDSIANALKVPLAFLL 62 Query: 75 DVSPTVCSDISSEEN 89 I +E Sbjct: 63 LKEEERMQVIRKDER 77 >gi|296133185|ref|YP_003640432.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296031763|gb|ADG82531.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 184 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + RIR R I G+S E L + GI+ + Q+YE G + S L ++ ++ Sbjct: 6 KQIAARIRELREISGISLETLAQEFGISKETYQEYESGEVDIPVSFLYEVANKFNVELTE 65 Query: 73 FFDVSPTV 80 Sbjct: 66 ILTGESPR 73 >gi|255655401|ref|ZP_05400810.1| MerR family transcriptional regulator [Clostridium difficile QCD-23m63] gi|296451389|ref|ZP_06893127.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296880261|ref|ZP_06904226.1| MerR family transcriptional regulator [Clostridium difficile NAP07] gi|296259805|gb|EFH06662.1| MerR family transcriptional regulator [Clostridium difficile NAP08] gi|296428704|gb|EFH14586.1| MerR family transcriptional regulator [Clostridium difficile NAP07] Length = 188 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 41/91 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+++R R + + + ++ + + E+ S L+ I+EVL++P+ F Sbjct: 1 MLGEKMRNIRKSKKKTLSDVSKLTDLSISYISQIERDAIEPSLSSLRKIAEVLDTPLYMF 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D + T I E+ +M F + ++ Sbjct: 61 MDDNNTDDLVIRKEDRVMMKFPKSEMFYEIV 91 >gi|153812486|ref|ZP_01965154.1| hypothetical protein RUMOBE_02885 [Ruminococcus obeum ATCC 29174] gi|149831411|gb|EDM86499.1| hypothetical protein RUMOBE_02885 [Ruminococcus obeum ATCC 29174] Length = 70 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q+KLGE + ++ Q + E G I+++ I F+ Sbjct: 5 NRVKELREKEGLTQKKLGEKVNVSRQAINAIETGKYDPSLWLAYDIAQLFNMSIEEVFNF 64 Query: 77 SPTV 80 + Sbjct: 65 KESE 68 >gi|89054537|ref|YP_509988.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88864086|gb|ABD54963.1| transcriptional regulator, XRE family with cupin sensor [Jannaschia sp. CCS1] Length = 205 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K +P +G IR RR L ++ + L + G++ + + E+G L Sbjct: 1 MARPKSNNDP---ALGALIRKRRKQLDLTLQALCDDAGLSVGYLSQVERGQATPSLGTLA 57 Query: 61 HISEVLESPISFF 73 I++ L + +F Sbjct: 58 QIAQGLSVELEYF 70 >gi|332527576|ref|ZP_08403623.1| helix-turn-helix domain-containing protein [Rubrivivax benzoatilyticus JA2] gi|332111979|gb|EGJ11956.1| helix-turn-helix domain-containing protein [Rubrivivax benzoatilyticus JA2] Length = 277 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 10/131 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R+ R G+SQ + LG + Q Q+ E G L +++ + + F Sbjct: 52 GRRLAEAREDAGLSQTEAAHRLGYSQQVQLSLMESGQRMPPLDVLLACTQLYGTTMDFLC 111 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI---------DDVKVRQKIIELVRS 125 ++P D + + + + ++ + +++ LV Sbjct: 112 GLAPDSDRDPALGIQRQLAAGLSAELRRVVEAMSSASVNVARAIGPNAARLRRLASLVLQ 171 Query: 126 IVSSEKKYRTI 136 ++ R++ Sbjct: 172 AQGQLERVRSV 182 >gi|325919915|ref|ZP_08181904.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325549624|gb|EGD20489.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 461 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 54/141 (38%), Gaps = 7/141 (4%) Query: 7 IPN---PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +P+ P+ +G R++ R G++Q +L L ++ + + E+ + + Q + Sbjct: 1 MPHTQPPLRHQLGLRLQRLRQRHGLTQAELARRLALSPSYLNQIERNQRPLTLAIQQRLK 60 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L P + E + + L++ + +V Q +++L Sbjct: 61 ATLGDLEGLLDLDDPAALVEPLDESLRSLGHSLSAAELRVLTG----NLPQVAQALLDLH 116 Query: 124 RSIVSSEKKYRTIEEECMVEQ 144 R+ +++ +E + + Sbjct: 117 RAHKRLQERNAALELQIGADH 137 >gi|322390908|ref|ZP_08064416.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321142421|gb|EFX37891.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 158 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 1 MIGENIKALRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYIDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + ++ I L + + Sbjct: 61 VGEEKMLTPVEDYQLTLKIEVIKERGANILAQLYR 95 >gi|228945385|ref|ZP_04107740.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228814357|gb|EEM60623.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 403 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDDDEIVELIQ 74 >gi|229030998|ref|ZP_04187014.1| hypothetical protein bcere0028_30570 [Bacillus cereus AH1271] gi|228730345|gb|EEL81309.1| hypothetical protein bcere0028_30570 [Bacillus cereus AH1271] Length = 374 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 IQIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP--------DGLQLNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + ++ + + + ++ ++ + Sbjct: 64 LICFTPQMEQEDIKNLYHRLAEAFSEEPFDEVMIECREIIKKYYSCFPLLLQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K I EE M Sbjct: 124 HMLTKDMGKRIEILEEAM 141 >gi|229121334|ref|ZP_04250565.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201] gi|228662179|gb|EEL17788.1| Transcriptional regulator, Xre [Bacillus cereus 95/8201] Length = 403 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDDDEIVELIQ 74 >gi|258511714|ref|YP_003185148.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478440|gb|ACV58759.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 436 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 2/97 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R GM+Q +L T + + E A L HI+ L +S F Sbjct: 4 LGQKIRALRKARGMTQSEL-ARGLATASMISQIESDRTMPSAQLLAHIAARLGVDVSEF- 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 S+ + + R+F+ + Sbjct: 62 QRELAGSSEEAHTYRRAKQLAEQGHYEEAIRHFLSLS 98 >gi|262197947|ref|YP_003269156.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262081294|gb|ACY17263.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 187 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ ++ R GMSQ ++ + GI E+G S L + L+ + Sbjct: 12 HLAHNVKQLREARGMSQAQIAKLAGIPRPTWSTLERGDGNPTLSVLLRAAAALQVSLEEL 71 >gi|225405316|ref|ZP_03760505.1| hypothetical protein CLOSTASPAR_04536 [Clostridium asparagiforme DSM 15981] gi|225043159|gb|EEG53405.1| hypothetical protein CLOSTASPAR_04536 [Clostridium asparagiforme DSM 15981] Length = 130 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 36/82 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G I R GM+Q +L E + +T + V K+E+ ++ L +++ +L I Sbjct: 1 MEKTLGMIIAEHRKEKGMTQLELAEKMRVTDKAVSKWERDLSCPDIHSLPNLAAILGISI 60 Query: 71 SFFFDVSPTVCSDISSEENNVM 92 + V + + + Sbjct: 61 DDLMQIKREVPVSSKNPKEVMD 82 >gi|218690255|ref|YP_002398467.1| Repressor protein CI from phage [Escherichia coli ED1a] gi|218427819|emb|CAR08732.2| Repressor protein CI from phage [Escherichia coli ED1a] Length = 215 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R G+SQ +L + ++ YE G +V A + L + Sbjct: 8 IGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPAKI 67 Query: 74 FDVSPTVC 81 + Sbjct: 68 MFGEDSDA 75 >gi|167764135|ref|ZP_02436262.1| hypothetical protein BACSTE_02518 [Bacteroides stercoris ATCC 43183] gi|167698251|gb|EDS14830.1| hypothetical protein BACSTE_02518 [Bacteroides stercoris ATCC 43183] Length = 123 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 6/118 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++L R+ ++QE++ E L ++ K E G + +RL I++VL F Sbjct: 10 GQQLQLLRLEKNLTQEQMSEKLNLSTSAYCKIEYGETDLTLTRLDKIAKVLGISALSLFS 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV-RSIVSSEKK 132 + + + L R I+ + +II+L+ + I E++ Sbjct: 70 YIDKSMNPNTDNSCKNNSNNDSAYDLNDLRELIKANT-----RIIDLLSKRIDLLEQR 122 >gi|126699098|ref|YP_001087995.1| putative transcriptional regulator [Clostridium difficile 630] Length = 197 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 50/120 (41%), Gaps = 1/120 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ ++G +I+ R M+ + + E ++ + + E+G+ V L I+ VL+ + Sbjct: 4 LNKDIGAKIKQLRTQKQMTLKDMSEKTNLSIGFLSQLERGLTSVATDSLGKIASVLDVEL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 ++FF + + + + + + + ++IE++ S S E Sbjct: 64 TYFFMKPKEHKRAVLRSYEKEVFDVENSTFI-HYHLSSSLKEKTMLPRLIEILPSKSSEE 122 >gi|254974937|ref|ZP_05271409.1| MerR family transcriptional regulator [Clostridium difficile QCD-66c26] gi|255092326|ref|ZP_05321804.1| MerR family transcriptional regulator [Clostridium difficile CIP 107932] gi|255100407|ref|ZP_05329384.1| MerR family transcriptional regulator [Clostridium difficile QCD-63q42] gi|255306352|ref|ZP_05350523.1| MerR family transcriptional regulator [Clostridium difficile ATCC 43255] gi|255314064|ref|ZP_05355647.1| MerR family transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516744|ref|ZP_05384420.1| MerR family transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649843|ref|ZP_05396745.1| MerR family transcriptional regulator [Clostridium difficile QCD-37x79] gi|260683001|ref|YP_003214286.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260686599|ref|YP_003217732.1| hypothetical protein CDR20291_1234 [Clostridium difficile R20291] gi|306519941|ref|ZP_07406288.1| hypothetical protein CdifQ_07697 [Clostridium difficile QCD-32g58] gi|260209164|emb|CBA62385.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260212615|emb|CBE03634.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 188 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 41/91 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+++R R + + + ++ + + E+ S L+ I+EVL++P+ F Sbjct: 1 MLGEKMRNIRKSKKKTLSDVSKLTDLSISYISQIERDAIEPSLSSLRKIAEVLDTPLYMF 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D + T I E+ +M F + ++ Sbjct: 61 MDDNNTDDLVIRKEDRVMMKFPKSEMFYEIV 91 >gi|15802659|ref|NP_288686.1| putative repressor protein CI of prophage CP-933V [Escherichia coli O157:H7 EDL933] gi|12516411|gb|AAG57241.1|AE005443_9 putative repressor protein CI of prophage CP-933V [Escherichia coli O157:H7 str. EDL933] Length = 215 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R G+SQ +L + ++ YE G +V A + L + Sbjct: 8 IGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPAKI 67 Query: 74 FDVSPTVC 81 + Sbjct: 68 MFGEDSDA 75 >gi|15837298|ref|NP_297986.1| phage-related repressor protein [Xylella fastidiosa 9a5c] gi|9105580|gb|AAF83506.1|AE003913_2 phage-related repressor protein [Xylella fastidiosa 9a5c] Length = 221 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 1/77 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ +G RIR R G+S+ +L + GI + E G +R + L I+E L Sbjct: 3 DMKIGSRIRAERENQGISRTELAKFAGIATSTLSDLELGHSR-STTALHKIAERLGVSAQ 61 Query: 72 FFFDVSPTVCSDISSEE 88 + +D Sbjct: 62 WLETGRGEKSTDTFPAP 78 >gi|15832244|ref|NP_311017.1| prophage repressor CI [Escherichia coli O157:H7 str. Sakai] gi|168764190|ref|ZP_02789197.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501] gi|11875129|dbj|BAB19608.1| CI protein [Enterobacteria phage VT1-Sakai] gi|13362459|dbj|BAB36413.1| putative prophage repressor CI [Escherichia coli O157:H7 str. Sakai] gi|189365770|gb|EDU84186.1| repressor protein CI [Escherichia coli O157:H7 str. EC4501] gi|326343910|gb|EGD67671.1| Putative prophage repressor CI [Escherichia coli O157:H7 str. 1044] Length = 212 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R G+SQ +L + ++ YE G +V A + L + Sbjct: 5 IGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPAKI 64 Query: 74 FDVSPTVC 81 + Sbjct: 65 MFGEDSDA 72 >gi|86138085|ref|ZP_01056660.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85825112|gb|EAQ45312.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 221 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+++R R ++ L E G++ + K E GV + LQ +++ L P+ Sbjct: 33 LEVAIGRQVRELRKRQRLTGANLAELTGLSVGMLSKIENGVISPSLNTLQVLADALRVPL 92 Query: 71 SFFFDVSPTVCSDI 84 F + Sbjct: 93 MQLFSGFEEARGAM 106 >gi|193070526|ref|ZP_03051466.1| repressor protein CI [Escherichia coli E110019] gi|192956220|gb|EDV86683.1| repressor protein CI [Escherichia coli E110019] Length = 215 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R G+SQ +L + ++ YE G +V A + L + Sbjct: 8 IGERIKSLREAKGLSQAQLAKLCGWAAPSRLGNYELGTRKVSADDALVLGAALGVSPAKI 67 Query: 74 FDVSPTVC 81 + Sbjct: 68 MFGEDSDA 75 >gi|153950714|ref|YP_001399331.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758] gi|152962209|gb|ABS49670.1| DNA-binding protein [Yersinia pseudotuberculosis IP 31758] Length = 135 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 20/128 (15%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ ++ G R++ R +Q+++ +G+ Q KYE G++ A +L Sbjct: 8 MMQTEEQ----RRAFGLRLKELRKQQHKTQKEVATRIGLQLSQYNKYESGMHIPPADKLI 63 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQK 118 ++E+L + I + S S I + +L F + + ++ Sbjct: 64 TLAELLVTSIDYLLLGSSNETSSIRN--------------TRLLERFKALSQCQPEEQET 109 Query: 119 IIELVRSI 126 +I+L+ ++ Sbjct: 110 VIKLIDAV 117 >gi|307610830|emb|CBX00445.1| phage repressor [Legionella pneumophila 130b] Length = 220 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G RI R LG++ ++L ++ ++ +E+G G + +++ L Sbjct: 2 DIREQIGNRITKARKELGITIKELATRTVELSPARISNWEQGTRSPGPLEAKLLADQLNV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFI 95 S+ ++ D+ N + +I Sbjct: 62 SASYLLCLTDNPQGDLIQSYENKLRYI 88 >gi|296876453|ref|ZP_06900504.1| possible transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432446|gb|EFH18242.1| possible transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 108 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 41/101 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + KRIR+ R GM+QE+L E + K E + S L+ I + L + Sbjct: 6 KYISKRIRILRTQSGMTQEQLEEKADLGTNYAYKLENLEPNIKISTLEKIIDALNVDLQT 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 FFD++ S ++ + + + ++ I + Sbjct: 66 FFDLTLKEESTDLAQLIDTIKSLPEYKQNKVISAINTIINE 106 >gi|295108110|emb|CBL22063.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 118 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 42/98 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 1 MPIDDLTALGQKMREARKKKDLTQQELADLNHVSVKQIASIEKGQINPSYLILKALAKVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + + + + +++ + + L Sbjct: 61 PLSLDTLINPNVSPEDEGANQMKMLYCSCPSEIRETLL 98 >gi|295094120|emb|CBK83211.1| Predicted transcriptional regulators [Coprococcus sp. ART55/1] Length = 111 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 16 GKRIRLRRMILGMSQEKLGE-CLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GKRI+ R G++ + L + K+++G + ++ + I Sbjct: 15 GKRIKEVREQKGITVKALQAFLGFNEPVSIYKWQRGECLPTFDNMYAMACLFGVGIDDLL 74 >gi|237667134|ref|ZP_04527118.1| transcriptional regulator, XRE family [Clostridium butyricum E4 str. BoNT E BL5262] gi|237655482|gb|EEP53038.1| transcriptional regulator, XRE family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 92 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 21/56 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R + + QE + + L + +E G L ++ + I + Sbjct: 5 RLKYLRSEMELKQEDIADKLNVARSTYGNWELGRTEPDIKSLIELARFYKVSIDYL 60 >gi|289805529|ref|ZP_06536158.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 107 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 31/72 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ V +RI+ R MS ++L G++ + + E + L I+ + Sbjct: 16 STINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGV 75 Query: 69 PISFFFDVSPTV 80 ++ F +V+ Sbjct: 76 SVADFVNVASEP 87 >gi|170761379|ref|YP_001785917.1| DNA binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169408368|gb|ACA56779.1| DNA binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 70 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 28/68 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R M+Q++L + + ++ + + EKG I+ V + I + + Sbjct: 3 NRVKELRTASNMTQQQLADLVSVSSRTIISLEKGQYNPSIMLAYKIAIVFNTTIEDLYCL 62 Query: 77 SPTVCSDI 84 + + Sbjct: 63 EGNLEDED 70 >gi|332982997|ref|YP_004464438.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332700675|gb|AEE97616.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 71 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I+ R+ + Q +L + GI+ + E G L +++ L+ I+ F Sbjct: 1 MLGTKIKKLRINKKIKQIELAKAAGISNSFLSDIENGRTMPSLKTLYKLADALDVSITVF 60 Query: 74 FDVSPT 79 + + Sbjct: 61 LEDDSS 66 >gi|320322393|gb|EFW78487.1| XRE family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 139 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 2/120 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R+ G++ E + G + K E+ L +SE L + S Sbjct: 21 MNIGAAIRKVRLEKGLTLEAVALDAGTYAGNLSKVERAQQLPSLDLLHKLSEALGTKTSE 80 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + V+ + + S + + L R Q + R+ IE ++ + S+ Sbjct: 81 LYAVAESGSDNSSGAASEPSPEQGNE--VILVRRHFQALTPRNRKLAIEFLKLLGQSQDD 138 >gi|317494163|ref|ZP_07952579.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917936|gb|EFV39279.1| hypothetical protein HMPREF0864_03348 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 154 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 35/99 (35%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 1 MKKTLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLAGAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + +D D GL R Sbjct: 61 NVEPWRLLVSDLSEDTDPELLVPYAADGSCFHPGLASTR 99 >gi|294500115|ref|YP_003563815.1| DNA-binding protein [Bacillus megaterium QM B1551] gi|294350052|gb|ADE70381.1| DNA-binding protein [Bacillus megaterium QM B1551] Length = 181 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK++ R G+S +L + IT + + E+G+ S L+ +++ L+ P Sbjct: 3 NIDIGKKVEKFRKAKGLSSRELAKLAEITPSMLSQIERGLANPSISTLKILAKCLDVPTF 62 Query: 72 FFF 74 F Sbjct: 63 SFL 65 >gi|317128356|ref|YP_004094638.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315473304|gb|ADU29907.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 111 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+R++ R GM+ +L + G+ + E+ L+ ++ VL I + Sbjct: 1 MIGERVKRYRKEAGMTLTELADKAGVAKSYLSALERNIQTNPSIQFLEKVANVLGLSIDY 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 S + + + Sbjct: 61 LLKDQVDNVSIVDEDIDKEW 80 >gi|254784572|ref|YP_003072000.1| XRE family transcriptional regulator [Teredinibacter turnerae T7901] gi|237683453|gb|ACR10717.1| transcriptional regulator, XRE family [Teredinibacter turnerae T7901] Length = 512 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 7/88 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRV 54 + + K +G +IR R ++ E L + E+G Sbjct: 1 MKDTKSLMRKAHFLGTKIRNLRKRNNLTIEDLSSRCVKVDAESAPSVSYLSMIERGKRVP 60 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCS 82 S L+ I+ V E P +F D +P Sbjct: 61 SESMLEVIARVFEKPPEWFLDEAPEDDD 88 >gi|228909080|ref|ZP_04072909.1| transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] gi|228850588|gb|EEM95413.1| transcriptional regulator, XRE [Bacillus thuringiensis IBL 200] Length = 108 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 41/103 (39%), Gaps = 4/103 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G IR R G++Q++L L ++ + YE+ + + L I++ + F Sbjct: 5 GNIIRDLRKQRGITQKELAHSLQLSESTIGMYERNERQPDYNTLIRIADYFDVSTDFLLG 64 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 F+V+ + + F + +L R++ + + Sbjct: 65 RDFNVTEDRNKIELDQWLKDIKFAPSQKREELKRFWKFLMQEE 107 >gi|212694772|ref|ZP_03302900.1| hypothetical protein BACDOR_04305 [Bacteroides dorei DSM 17855] gi|237710957|ref|ZP_04541438.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] gi|237727255|ref|ZP_04557736.1| transcriptional regulator [Bacteroides sp. D4] gi|265750545|ref|ZP_06086608.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] gi|212662626|gb|EEB23200.1| hypothetical protein BACDOR_04305 [Bacteroides dorei DSM 17855] gi|229434111|gb|EEO44188.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4] gi|229454801|gb|EEO60522.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] gi|263237441|gb|EEZ22891.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] Length = 191 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R +S +L G+ +Q+++ E V+ + L I+ L + Sbjct: 5 KIVGEKIKSLRETKEISVAELAVRSGLAEEQIERIENNVDLPSLAPLIKIARALGVRLGT 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 F D + I ++ + + + + L Sbjct: 65 FLDDQEEQGAVICRKQESEDTISFSNNAMDL 95 >gi|210617288|ref|ZP_03291514.1| hypothetical protein CLONEX_03736 [Clostridium nexile DSM 1787] gi|210149392|gb|EEA80401.1| hypothetical protein CLONEX_03736 [Clostridium nexile DSM 1787] Length = 78 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGIT-----FQQVQKYEKGVNRVGASRLQHISEVL 66 D+++GK I+ R ++Q+++ L + K E + S L ++++ Sbjct: 7 DMDIGKNIQSLRYKNNLTQDQVIAKLNLMGIVISKSTYAKLETNRMNIKVSELVALAKIF 66 Query: 67 ESPISFFFDV 76 + I+ FFD Sbjct: 67 HTDINAFFDG 76 >gi|29375459|ref|NP_814613.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|227554984|ref|ZP_03985031.1| Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|229548810|ref|ZP_04437535.1| Cro/CI family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|257421120|ref|ZP_05598110.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|293383752|ref|ZP_06629659.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293388772|ref|ZP_06633265.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|294781285|ref|ZP_06746631.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|307267950|ref|ZP_07549338.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|312901584|ref|ZP_07760857.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|312904434|ref|ZP_07763593.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|312907032|ref|ZP_07766028.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312952858|ref|ZP_07771720.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|312978710|ref|ZP_07790437.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|29342919|gb|AAO80683.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|227175893|gb|EEI56865.1| Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|229306039|gb|EEN72035.1| Cro/CI family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|257162944|gb|EEU92904.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|291078828|gb|EFE16192.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291081929|gb|EFE18892.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|294451621|gb|EFG20077.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|306515591|gb|EFM84118.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310627017|gb|EFQ10300.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|310629374|gb|EFQ12657.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310632132|gb|EFQ15415.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|311288417|gb|EFQ66973.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|311291379|gb|EFQ69935.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|315032497|gb|EFT44429.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315034269|gb|EFT46201.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315148032|gb|EFT92048.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315152946|gb|EFT96962.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315155177|gb|EFT99193.1| helix-turn-helix protein [Enterococcus faecalis TX0043] gi|315157505|gb|EFU01522.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315167991|gb|EFU12008.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315574213|gb|EFU86404.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315577343|gb|EFU89534.1| helix-turn-helix protein [Enterococcus faecalis TX0630] gi|315581644|gb|EFU93835.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|323480055|gb|ADX79494.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 232 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + ++ + ++ Sbjct: 66 WLLYGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMGRLSEEQL 107 >gi|15804867|ref|NP_290908.1| hypothetical protein Z5888 [Escherichia coli O157:H7 EDL933] gi|15834506|ref|NP_313279.1| transcription regulator [Escherichia coli O157:H7 str. Sakai] gi|187775901|ref|ZP_02799013.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4196] gi|188024876|ref|ZP_02774577.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4113] gi|189010535|ref|ZP_02807807.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189402054|ref|ZP_02779862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189402821|ref|ZP_02791571.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189403845|ref|ZP_02785537.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4501] gi|189405572|ref|ZP_02822862.2| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC508] gi|208808264|ref|ZP_03250601.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208813993|ref|ZP_03255322.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208819818|ref|ZP_03260138.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209396646|ref|YP_002273817.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4115] gi|217326404|ref|ZP_03442488.1| putative transcription regulator [Escherichia coli O157:H7 str. TW14588] gi|254796292|ref|YP_003081129.1| hypothetical protein ECSP_5374 [Escherichia coli O157:H7 str. TW14359] gi|12519290|gb|AAG59474.1|AE005659_9 hypothetical protein Z5888 [Escherichia coli O157:H7 str. EDL933] gi|13364730|dbj|BAB38675.1| putative transcription regulator [Escherichia coli O157:H7 str. Sakai] gi|187770260|gb|EDU34104.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4196] gi|188016183|gb|EDU54305.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4113] gi|188999764|gb|EDU68750.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4076] gi|189357829|gb|EDU76248.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4401] gi|189364128|gb|EDU82547.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4486] gi|189368948|gb|EDU87364.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4501] gi|189379428|gb|EDU97844.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC508] gi|208728065|gb|EDZ77666.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4206] gi|208735270|gb|EDZ83957.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4045] gi|208739941|gb|EDZ87623.1| helix-turn-helix domain protein [Escherichia coli O157:H7 str. EC4042] gi|209158046|gb|ACI35479.1| putative transcription regulator [Escherichia coli O157:H7 str. EC4115] gi|217322625|gb|EEC31049.1| putative transcription regulator [Escherichia coli O157:H7 str. TW14588] gi|254595692|gb|ACT75053.1| predicted protein [Escherichia coli O157:H7 str. TW14359] gi|320190592|gb|EFW65242.1| putative transcription regulator [Escherichia coli O157:H7 str. EC1212] gi|326345394|gb|EGD69137.1| putative transcription regulator [Escherichia coli O157:H7 str. 1125] gi|326346751|gb|EGD70485.1| putative transcription regulator [Escherichia coli O157:H7 str. 1044] Length = 154 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 32/90 (35%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 10 GQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPWRLLV 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + SD D GL R Sbjct: 70 SDSSEDSDPELLVPYAADGSCFHPGLASTR 99 >gi|86137152|ref|ZP_01055730.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85826476|gb|EAQ46673.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 187 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 1/80 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G+S K + G++ + + E+G + + L I++ P++ Sbjct: 6 IGANLRKIRNAAGLSLSKAADLTGVSKAMLGQIERGESSPTIATLWKIAKGFHLPLTALI 65 Query: 75 DVSPTVCSDISSEENNVMDF 94 +P + + F Sbjct: 66 -GAPDADQPDPAVAFETVQF 84 >gi|311899387|dbj|BAJ31795.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 188 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R +S E L +G+T + K E+G++ S I+E L + F Sbjct: 4 RLRALRTQNRLSLEALAAQVGVTKSYLSKVERGLSEPSISTALKIAEALGVEVGRLFSEE 63 Query: 78 PTVC 81 Sbjct: 64 VEPE 67 >gi|323529342|ref|YP_004231494.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323386344|gb|ADX58434.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 210 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 K P ++G+R+R R ++ E G++ + K E G+ LQ Sbjct: 3 TNTTKPAEPSTADLGRRVRAARQSQDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQK 62 Query: 62 ISEVLESPISFFFDVSP 78 I L+ I F +P Sbjct: 63 IVLGLKIEIGELFGSTP 79 >gi|262191222|ref|ZP_06049420.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae CT 5369-93] gi|262032888|gb|EEY51428.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae CT 5369-93] Length = 181 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 37/84 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 9 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 F P + S S ++ + T Sbjct: 69 FANDPQLLSSERSFPDDPNMKVHT 92 >gi|229529008|ref|ZP_04418398.1| Transcriptional regulator YidN, Cro/CI family [Vibrio cholerae 12129(1)] gi|229332782|gb|EEN98268.1| Transcriptional regulator YidN, Cro/CI family [Vibrio cholerae 12129(1)] gi|327484506|gb|AEA78913.1| Transcriptional regulator yidN, Cro/CI family [Vibrio cholerae LMA3894-4] Length = 181 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 37/84 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 9 QIANQLKKLRKSRGLSLDTTAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 F P + S S ++ + T Sbjct: 69 FANDPQLLSSERSFPDDPNMKVHT 92 >gi|225352439|ref|ZP_03743462.1| hypothetical protein BIFPSEUDO_04061 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156946|gb|EEG70315.1| hypothetical protein BIFPSEUDO_04061 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 167 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 25/61 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R M+QE+L LG++ Q + K+E +L + ++ + Sbjct: 5 ENLQYLRGSRNMTQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMLCDMFGVTLDDLVMG 64 Query: 77 S 77 Sbjct: 65 D 65 >gi|254828782|ref|ZP_05233469.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258601190|gb|EEW14515.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] Length = 300 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 11/113 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R+ G++Q+++ + I+ +EKG + + S + I + + P+ FF Sbjct: 5 GELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFF- 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR--------YFIQIDDVKVRQKII 120 + +++ +DF+ + + + +VR+ I+ Sbjct: 63 -FIYRDFSSTEDDSFWIDFVELSGKNDVVGMQALLDKITLERTEQTEVRKAIL 114 >gi|238792829|ref|ZP_04636460.1| Helix-turn-helix domain protein [Yersinia intermedia ATCC 29909] gi|238727937|gb|EEQ19460.1| Helix-turn-helix domain protein [Yersinia intermedia ATCC 29909] Length = 154 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 35/99 (35%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 1 MKKNLRIQFGERVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLAGAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + +D D GL R Sbjct: 61 NVEPWRLLVSDLSEDTDPELLVPYAADGSCFHPGLASTR 99 >gi|325842510|ref|ZP_08167681.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|325489554|gb|EGC91918.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 367 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 8/136 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVGK I L+R ++Q++L + +G++ + K+E G + + L ++ I Sbjct: 4 INVGKMIILKRKEKKITQDELAKYIGVSKAAISKWETGQSYPDITLLPILAAYFNMSIDE 63 Query: 73 FFDVSPTVCSDISSE--ENNVMDFISTPD------GLQLNRYFIQIDDVKVRQKIIELVR 124 P + + + DF P +L + + + + ++ + Sbjct: 64 LIGYEPQMVKEDIQKLYVRLCEDFAKKPFEEVILECEELIKKYYSCFPLLHQMGLLLINH 123 Query: 125 SIVSSEKKYRTIEEEC 140 S+++ + T E Sbjct: 124 SMLAPDVLEMTRLNEL 139 >gi|307708405|ref|ZP_07644871.1| conserved domain protein [Streptococcus mitis NCTC 12261] gi|307615504|gb|EFN94711.1| conserved domain protein [Streptococcus mitis NCTC 12261] Length = 69 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R+ L ++Q +L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 78 PTVC 81 Sbjct: 66 EDEK 69 >gi|301066067|ref|YP_003788090.1| transcriptional regulator [Lactobacillus casei str. Zhang] gi|300438474|gb|ADK18240.1| transcriptional regulator [Lactobacillus casei str. Zhang] Length = 187 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 38/96 (39%), Gaps = 6/96 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G + +L + G+ + YE+G A L+ ++++ E+ ++ + Sbjct: 3 NRIKAFRYEKGWTLSQLAKKAGMPITTLSNYERGTRTPSAEVLKKLADIFETNTAYLMGL 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + +++ + F F ++ + Sbjct: 63 TDAPAETLTNSNLKNIKFEVRS------EAFQRLAN 92 >gi|317054347|ref|YP_004118372.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952342|gb|ADU71816.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 200 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 41/111 (36%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + V V R+R +R +S ++L G++ + + EKG + L Sbjct: 9 TETGSSIDHVSAAVSSRVRTQRKEQKLSLDELARRAGVSKGMLVEVEKGDANPSIAILCK 68 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 I+ L ++ DVS + + + ++ + + G + D Sbjct: 69 IAAALGLSVADMVDVSDEPLAHLIAAQDMPILWQGEKGGTARLIAGTRGPD 119 >gi|167746942|ref|ZP_02419069.1| hypothetical protein ANACAC_01654 [Anaerostipes caccae DSM 14662] gi|167653902|gb|EDR98031.1| hypothetical protein ANACAC_01654 [Anaerostipes caccae DSM 14662] Length = 159 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ +R G++Q +L LGIT + V K+E G S + + + L ++ Sbjct: 6 IGNYIKCKRKAQGLTQAELAGLLGITNKAVSKWENGKCLPDLSLHEKLCDALHITLNELV 65 Query: 75 DVSP-TVCSDISSEENNVMDFISTPDGLQLNR 105 + E N+ + + L+ + Sbjct: 66 AGQDIESTQLPEASEQNMKTMLGSCQHLRSLK 97 >gi|52079512|ref|YP_078303.1| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52784877|ref|YP_090706.1| hypothetical protein BLi01105 [Bacillus licheniformis ATCC 14580] gi|52002723|gb|AAU22665.1| putative transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52347379|gb|AAU40013.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 183 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 34/92 (36%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ V + I+ R I S ++L G++ + + EKG + + L I+ L+ Sbjct: 2 NSIEKQVAENIKRLRKIRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 + + + + E + Sbjct: 62 SFTSLAERPAGEPTVVRKHEKTPVMAGEEKYA 93 >gi|331091802|ref|ZP_08340634.1| hypothetical protein HMPREF9477_01277 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402701|gb|EGG82268.1| hypothetical protein HMPREF9477_01277 [Lachnospiraceae bacterium 2_1_46FAA] Length = 106 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 45/120 (37%), Gaps = 15/120 (12%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N +G+++R+ R+ ++QE + + + E +V S L I L Sbjct: 1 MANLNFERIGEKLRIIRLSKNLTQEYIANVADVNTSHISNIENNRVKVSLSTLVQICNAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + + S +E + D K +++I+++++++ Sbjct: 61 NTTVDYVLSEEYNDASSAIEQEIIHE---------------LHACDTKTKEQILKIIKAL 105 >gi|309777434|ref|ZP_07672392.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308914830|gb|EFP60612.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 183 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 30/73 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R ++Q+ + L I + ++E+G +L + E+LE+ + + Sbjct: 3 NRIRQVRKAKKLTQQDIARKLNINQTAISQWERGSTVPKNEKLIQLCEILETSSDYLLGI 62 Query: 77 SPTVCSDISSEEN 89 S + + Sbjct: 63 SDDPAFRDAESKA 75 >gi|269124939|ref|YP_003298309.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309897|gb|ACY96271.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 188 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 27/74 (36%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + P+ + IR R G+S +L + GI + + E G L Sbjct: 1 MAEGRPTAPLLAQIAASIRRERERAGLSLSELAKRAGIAKSTLSQLESGSGNPSVETLWA 60 Query: 62 ISEVLESPISFFFD 75 ++ L P S D Sbjct: 61 LAVALGVPFSRLVD 74 >gi|212709591|ref|ZP_03317719.1| hypothetical protein PROVALCAL_00636 [Providencia alcalifaciens DSM 30120] gi|212687767|gb|EEB47295.1| hypothetical protein PROVALCAL_00636 [Providencia alcalifaciens DSM 30120] Length = 214 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 1/71 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ +G+R++ R G+SQ +L + ++ YE G ++ A ISE L Sbjct: 4 INEIIGERLKSIRESRGLSQAQLAKLCGYSAASRIGNYELGERKISADDALVISEALGVS 63 Query: 70 ISFFFDVSPTV 80 + + Sbjct: 64 PAELMFGDRSD 74 >gi|188495880|ref|ZP_03003150.1| helix-turn-helix domain protein [Escherichia coli 53638] gi|188491079|gb|EDU66182.1| helix-turn-helix domain protein [Escherichia coli 53638] Length = 164 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R +R G++ +L L + + + ++E G S L ++ +L + Sbjct: 86 NLRTQREACGLTTAELARLLDLDEEIIIQWESGEYEPTISMLIPLANILGCDPMWLLTGE 145 Query: 78 PTVCSDISSEENNVMD 93 T SEE D Sbjct: 146 VTPPEQPKSEEQQHHD 161 >gi|160890222|ref|ZP_02071225.1| hypothetical protein BACUNI_02662 [Bacteroides uniformis ATCC 8492] gi|317480205|ref|ZP_07939312.1| helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] gi|156859954|gb|EDO53385.1| hypothetical protein BACUNI_02662 [Bacteroides uniformis ATCC 8492] gi|316903587|gb|EFV25434.1| helix-turn-helix domain-containing protein [Bacteroides sp. 4_1_36] Length = 126 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 51/130 (39%), Gaps = 14/130 (10%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +IR +SQ + + I+ + + + GA L+ I++ PI +FFD Sbjct: 6 KIRRLFEDRKISQAQFLKDTSISKSNLYVWLNNTSIPGADNLEIIADYFNVPIDYFFDRD 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 + N+ I + R++I E + +++ +++ T + Sbjct: 66 INSSGINIGHQVKGNG----------NKISGDITLSECRKEI-EHLNALLEEKERVITEK 114 Query: 138 E---ECMVEQ 144 E + ++++ Sbjct: 115 ERTIQILIQK 124 >gi|114564176|ref|YP_751690.1| XRE family transcriptional regulator [Shewanella frigidimarina NCIMB 400] gi|114335469|gb|ABI72851.1| transcriptional regulator, XRE family with cupin sensor [Shewanella frigidimarina NCIMB 400] Length = 182 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDIGTSLKAVRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLAGIPMSLVD 60 Query: 73 FFDVSPTVCSD 83 FF + D Sbjct: 61 FFSIDDGSIGD 71 >gi|322804615|emb|CBZ02167.1| transcriptional regulator, MerR family [Clostridium botulinum H04402 065] Length = 181 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++IR R ++ + L E G++ + + E + + + L+ I + L PI++F Sbjct: 4 EIAEKIRNLRKEKNLTLKDLSEKTGLSISFLSQVENNSSSLAITSLKKIGDALNVPITYF 63 Query: 74 F 74 F Sbjct: 64 F 64 >gi|315037793|ref|YP_004031361.1| DNA-binding membrane protein [Lactobacillus amylovorus GRL 1112] gi|312275926|gb|ADQ58566.1| DNA-binding membrane protein [Lactobacillus amylovorus GRL 1112] Length = 157 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R +SQ + + L +T Q V ++ N + L I+ V + Sbjct: 6 QIKQLRKENNLSQVQYAKKLYVTRQAVSNWKNNRNLLDLEMLIEINRVFHISLDQLILGD 65 Query: 78 PTV 80 + Sbjct: 66 DNM 68 >gi|317056742|ref|YP_004105209.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449011|gb|ADU22575.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 146 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 29/56 (51%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR R+ G+SQE+L E + +T Q V ++E G L+ +S + E I+ Sbjct: 7 IRELRVKRGLSQEELAEKVYVTRQAVSRWENGDTVPNTETLKLLSVLFEVSINTIL 62 >gi|317057355|ref|YP_004105822.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449624|gb|ADU23188.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 210 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 1/84 (1%) Query: 2 VGNKKIPN-PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + NK PN N G+ + R G++Q++L + L I + EK N +LQ Sbjct: 1 MANKPQPNFEFCNNYGENYKRLRTDKGLTQKELAKALNIVHSTISDIEKSKNPPTIEQLQ 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI 84 + + + DI Sbjct: 61 AYHKYFGVSYEYLLGETKAQSPDI 84 >gi|296158619|ref|ZP_06841449.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295891187|gb|EFG70975.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 212 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 31/89 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 T + S + + QL Sbjct: 95 APQKTPEAIAVSGPHEIPTLSGHDARYQL 123 >gi|228474268|ref|ZP_04059003.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] gi|314936712|ref|ZP_07844059.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] gi|228271627|gb|EEK12974.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis SK119] gi|313655331|gb|EFS19076.1| transcriptional regulator, Cro/CI family [Staphylococcus hominis subsp. hominis C80] Length = 179 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 31/89 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R ++QE+L E ++ + + E I EVL + S Sbjct: 1 MQIGYKLKNLRRQKNLTQEELAERTDLSKGYISQIESEYASPSMETFLSILEVLGTTPSD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 FF E + D L Sbjct: 61 FFKEKAKEKVLYKKSERTIYDEYDRGYIL 89 >gi|227508605|ref|ZP_03938654.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191937|gb|EEI72004.1| conserved hypothetical protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 184 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 36/80 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK ++++R SQ +L E L I+ Q + K+E+ V + + IS++ + + Sbjct: 1 MKIGKVLQVQREKRHWSQAELAEKLSISRQSISKWEQEVALPSFANVVAISDLFKISLDD 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 + +S + Sbjct: 61 LIKGDDKLMDKLSRNDKMRP 80 >gi|227520119|ref|ZP_03950168.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX0104] gi|227072463|gb|EEI10426.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX0104] Length = 232 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + I++ + ++ Sbjct: 66 WLLYGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMIRLSEEQL 107 >gi|170760571|ref|YP_001787673.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407560|gb|ACA55971.1| putative DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 78 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +++ R LG++QE+LGE +G++ Q + E G I++V I F F Sbjct: 3 NKLKQFREDLGLTQEQLGELVGVSRQAINAIETGKFEPSIWLAYDIAKVFHDTIEEVFLF 62 Query: 75 DVSPTVCSDISS 86 + S S Sbjct: 63 EESERKSRAEKS 74 >gi|153940779|ref|YP_001389988.1| cupin domain-containing protein [Clostridium botulinum F str. Langeland] gi|152936675|gb|ABS42173.1| cupin domain protein [Clostridium botulinum F str. Langeland] gi|295318072|gb|ADF98449.1| cupin domain protein [Clostridium botulinum F str. 230613] Length = 183 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 28/71 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R +S +L E I+ + + EKG + L I+ L+ P Sbjct: 3 INSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPY 62 Query: 71 SFFFDVSPTVC 81 + + Sbjct: 63 TLLLEQKEHDT 73 >gi|118592886|ref|ZP_01550274.1| DNA-binding protein, putative [Stappia aggregata IAM 12614] gi|118434420|gb|EAV41073.1| DNA-binding protein, putative [Stappia aggregata IAM 12614] Length = 191 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 37/93 (39%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N + +VG R+R R G SQ +L + G+T + + E S L+ Sbjct: 1 MVNTLNTDDFSRDVGLRLRAIREAHGYSQRELAKRAGVTNGFISQLEAAKINTSLSALKR 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDF 94 + + + +S FF P + + + + Sbjct: 61 VLDGIPIGLSEFFAYEPERQEQVFFGADELTEI 93 >gi|15895142|ref|NP_348491.1| Xre family transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024845|gb|AAK79831.1|AE007695_4 Transcriptional regulator (phage-related) (Xre family) [Clostridium acetobutylicum ATCC 824] gi|325509281|gb|ADZ20917.1| Transcriptional regulator (phage-related) (Xre family) [Clostridium acetobutylicum EA 2018] Length = 91 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I RM+ G S+ + + I + V KYE + L I +S+F Sbjct: 32 IGEKIYKLRMLHGYSRREFAKVCSIGYTSVCKYELNYSLPHPKNLNKICSAFNISMSYFL 91 >gi|315222450|ref|ZP_07864351.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315188474|gb|EFU22188.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 133 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 45/89 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R GM+Q +L E +G+T + V K+E+ ++ + + ++++ ++ + Sbjct: 6 LGMMISSLRKAKGMTQLELAEKMGVTDKAVSKWERDLSYPDINTIPKLADLFDTSVDELM 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 + + + +++++D + G+ + Sbjct: 66 QGQTVMKENKKNRKSDIVDTVLRGLGVAM 94 >gi|296159598|ref|ZP_06842421.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295890042|gb|EFG69837.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 212 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +P ++G+R+R R ++ E G++ + K E G+ LQ I Sbjct: 7 KPADPSTTDLGRRVRAARQAQDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVLG 66 Query: 66 LESPISFFFDVSP 78 L+ I F +P Sbjct: 67 LKIEIGELFGSTP 79 >gi|307726443|ref|YP_003909656.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1003] gi|307586968|gb|ADN60365.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003] Length = 237 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 1 MVGNKKIP-NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N P P ++G+R+R R ++ E G++ + K E G+ L Sbjct: 24 MDTNTTKPVEPSTADLGRRVRAARQSQDLTLETASRLCGVSRSTLSKVENGLMSPTFDVL 83 Query: 60 QHISEVLESPISFFFDVSP 78 Q I L+ I F +P Sbjct: 84 QKIVVGLKIEIGELFGSTP 102 >gi|228933066|ref|ZP_04095929.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228826667|gb|EEM72438.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 403 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDDDEIVELIQ 74 >gi|258510478|ref|YP_003183912.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477204|gb|ACV57523.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 163 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 11/117 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R G+SQ L E L +T Q+ YE+G L+ +++ + I F Sbjct: 6 GERLAQLRRSKGLSQYALAEQLKMTRGQIANYEQGTREPDIETLKKLADFFDVSIDFLVL 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 P NV DF + ++ + V+ +Q++ + + S E++ Sbjct: 66 GKP-----------NVSDFNGLTNEVKRTLEALSQMSVEKQQEVADFAEYLRSKEEQ 111 >gi|218551631|ref|YP_002385423.1| Repressor protein C2 [Escherichia fergusonii ATCC 35469] gi|218359173|emb|CAQ91836.1| Repressor protein C2 [Escherichia fergusonii ATCC 35469] Length = 208 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 33/64 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R + SQ++LG+ G++ V +EK +N G L +++ + I + Sbjct: 4 VGQRIKALRRVTRTSQKELGKFCGVSDVAVGYWEKDINVPGGEALSKLAKFFNTSIDYIL 63 Query: 75 DVSP 78 + Sbjct: 64 YGAE 67 >gi|163782866|ref|ZP_02177862.1| hypothetical protein HG1285_16061 [Hydrogenivirga sp. 128-5-R1-1] gi|159881987|gb|EDP75495.1| hypothetical protein HG1285_16061 [Hydrogenivirga sp. 128-5-R1-1] Length = 71 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 34/69 (49%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+R+R R G+SQE+ +GI ++++ E+G + L +IS++ + + Sbjct: 1 MVGERVRKLREEKGLSQEEFARRIGIPVDRLREIEEGRLEPCDATLVYISKLFDVSFWWL 60 Query: 74 FDVSPTVCS 82 + V Sbjct: 61 KEGRKEVAE 69 >gi|114328257|ref|YP_745414.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1] gi|114316431|gb|ABI62491.1| transcriptional repressor [Granulibacter bethesdensis CGDNIH1] Length = 255 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 6/85 (7%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES- 68 P+++ VG+R+R R+ G SQ+ L + G + + K E+ + + + L +++ L Sbjct: 14 PIEMTVGERMRHARIQRGWSQDALAKEAGTSQTTIDKIERNLTQ-RSRALPRLAQCLGVD 72 Query: 69 ----PISFFFDVSPTVCSDISSEEN 89 + D P ++ + Sbjct: 73 LLTLDPDYLGDYQPGTEAEAPPQSP 97 >gi|150395536|ref|YP_001326003.1| hypothetical protein Smed_0309 [Sinorhizobium medicae WSM419] gi|150027051|gb|ABR59168.1| protein of unknown function DUF955 [Sinorhizobium medicae WSM419] Length = 470 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 50/144 (34%), Gaps = 10/144 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NK I G R+R R L ++Q + E LGI+ + E+ + L Sbjct: 1 MAENK-------IFAGPRVRRIRNGLQLTQTAMAEALGISPSYLNLIERNQRPLTVQLLL 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ V + + + +++ + + P +L V I+ Sbjct: 54 KLASVYRIDLEELQGEAGSGLAELREVFADPLLAGELPGDQELVEVAEAA--PNVSGGIV 111 Query: 121 ELVRSIVSSEKKYRTIEEECMVEQ 144 +L R+ + R + +Q Sbjct: 112 KLHRAYREQAARLRD-LAALLADQ 134 >gi|91783413|ref|YP_558619.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687367|gb|ABE30567.1| Predicted transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 152 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 4/107 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I RR LGM+QE+L E + I + + E+G RL I+E LE ++ F Sbjct: 33 IGAAIAARRKALGMTQERLSELIQIEQSSLSRIERGTLIPSLERLASIAEELECGLADLF 92 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR----YFIQIDDVKVRQ 117 V D ++ + + ++ R ++ + R+ Sbjct: 93 YVGGVNSHDRAARVHEKLSHLTPSQQEIFERLIDDALALLETPQGRR 139 >gi|49477327|ref|YP_035899.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118477214|ref|YP_894365.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|229183977|ref|ZP_04311192.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1] gi|49328883|gb|AAT59529.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118416439|gb|ABK84858.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|228599502|gb|EEK57107.1| Transcriptional regulator, Xre [Bacillus cereus BGSC 6E1] Length = 403 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDDDEIVELIQ 74 >gi|78044374|ref|YP_359408.1| AraC family transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77996489|gb|ABB15388.1| transcriptional regulator, AraC family [Carboxydothermus hydrogenoformans Z-2901] Length = 257 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V + +G+RIRL R ++ +L +GI+ + + E+ + L+ I+E L + Sbjct: 70 VSLTLGERIRLIREEKKLTISELAARVGISVSYLSEIERDTVNPSVATLRRIAEELGVSV 129 Query: 71 SFFFDVS 77 + Sbjct: 130 ADLMGKE 136 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 47/102 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R +G++Q +L G++ + + E+G + ++ ++EVL + +F Sbjct: 139 LGYKLKKLREDMGLTQAELASQAGVSPGLIGQIEQGKVQPSLKTIEKLAEVLGTTPCYFI 198 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + ++ + + + P+ L +++ +++ Sbjct: 199 LEQTSPEQMLNLMSPELRELLLNPNVQSLLSSICTLNEKELQ 240 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +IR R G++ +L + G++ + + E+G + + I++ L + + Sbjct: 5 GNKIRELREERGLTLNELSKKAGLSISYLSEIERGSKKPSLKTIDKIAKALNVNKAQILE 64 Query: 76 VS 77 Sbjct: 65 TE 66 >gi|260062047|ref|YP_003195127.1| hypothetical protein RB2501_10657 [Robiginitalea biformata HTCC2501] gi|88783609|gb|EAR14780.1| hypothetical protein RB2501_10657 [Robiginitalea biformata HTCC2501] Length = 605 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 32/74 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ + +R G+SQE+L +T + +Q+ EKG ++ ++ L + Sbjct: 1 MTLGENLIYQRKKQGLSQEELAGKTQVTVRTIQRIEKGDVNPHLQTVKLLAAALSVEVED 60 Query: 73 FFDVSPTVCSDISS 86 + I + Sbjct: 61 LMPIDNPREETIQA 74 >gi|67921508|ref|ZP_00515026.1| Helix-turn-helix motif [Crocosphaera watsonii WH 8501] gi|67856620|gb|EAM51861.1| Helix-turn-helix motif [Crocosphaera watsonii WH 8501] Length = 229 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 9 NPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N +++ +G+R++ R GM+Q + + + + + EKG R+ +S L ++ Sbjct: 7 NKINLNQLGERLQQARKQCGMTQAEAAKIIKVARTTIVAIEKGERRLKSSELIKLARAYG 66 Query: 68 SPISFFFDVSP 78 +S F +P Sbjct: 67 RNVSDFVKETP 77 >gi|332970254|gb|EGK09246.1| LexA family repressor/S24 family protease [Kingella kingae ATCC 23330] Length = 206 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ RR+ LG+SQ LG+ G+ + + E G N+ ++++ ++ L++ + + D Sbjct: 5 ERVKNRRLELGLSQAALGKLAGVPQSTIGQIENGRNK-SSTKILELAHALQTTVEYLVDG 63 Query: 77 -SPTVCSDISSEENNVMDFIST 97 P + + + + Sbjct: 64 VEPAQKQPSLPNVSEMPTPLYS 85 >gi|326381819|ref|ZP_08203512.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] gi|326199245|gb|EGD56426.1| transcriptional regulator, XRE family protein [Gordonia neofelifaecis NRRL B-59395] Length = 125 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 7/84 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-------GVNRVGASRLQHISEVLES 68 G R+ R G+SQE+L E G+ V E+ G+ S + ++ LE Sbjct: 19 GHRLVTVRKARGLSQEELAERCGLHRNAVSNLERATSNSASGIADPLLSTVYRLARALEV 78 Query: 69 PISFFFDVSPTVCSDISSEENNVM 92 P ++ + + ++E+ Sbjct: 79 PPTYLMPGADSRIGLRAAEQETNQ 102 >gi|317494934|ref|ZP_07953343.1| hypothetical protein HMPREF0864_04113 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917076|gb|EFV38426.1| hypothetical protein HMPREF0864_04113 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 120 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 5/118 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLESP 69 V KR+R R G+SQEKL + + I ++ YE G S + I+ +L+ P Sbjct: 1 MVPKRLREAREAAGISQEKLSQLIDIDGKNSRSRLSSYEVGRTEPPFSLVVKIARLLDYP 60 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI-QIDDVKVRQKIIELVRSI 126 +F+ V + ++ N ++ L + + + R+ + +L + Sbjct: 61 EYYFYTVDDDMAKNMLEVHRNRVNPEENLQYYTLEENKKLRKQNEEARKLLKQLNECL 118 >gi|290770159|gb|ADD61918.1| putative protein [uncultured organism] Length = 126 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 51/124 (41%), Gaps = 5/124 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 3 MPIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSHLILRALAKVL 62 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + ++ + ++ + L + + +++ EL +++ Sbjct: 63 HISLDTLINPDVSLEDEGVNQMKMLYSSCPPEMRDTLLHH-----TQETVKELTELSKNL 117 Query: 127 VSSE 130 E Sbjct: 118 KRIE 121 >gi|299144948|ref|ZP_07038016.1| putative prophage L54a, repressor protein [Bacteroides sp. 3_1_23] gi|298515439|gb|EFI39320.1| putative prophage L54a, repressor protein [Bacteroides sp. 3_1_23] Length = 131 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VG R+++ RM ++QE++GE L ++ K E G + +RL I+EVL Sbjct: 1 METDLKKIVGHRLQMLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVL 60 Query: 67 ESPISFFFD 75 F+ Sbjct: 61 NMSALELFN 69 >gi|269127981|ref|YP_003301351.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312939|gb|ACY99313.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 279 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 52/168 (30%), Gaps = 28/168 (16%) Query: 1 MVGNK-----KIPNPVD------INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK 49 M K + PNP+D G +IR R G S E+LG + + + + E+ Sbjct: 1 MAKTKGVNVGRPPNPIDPNSSLAARFGWKIRTLREQRGWSLEELGNKVACSASYLSRLER 60 Query: 50 GVNRVGASRLQHISEVLESPISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQLNR 105 GV + + + L + +F + V S + + N Sbjct: 61 GVKSPDEAVARQLDAALGTT--YFSEHWQLVLRERLSQPGRAQTEHEFEAAVIRACMPNL 118 Query: 106 YFIQIDDVKVRQKI-----------IELVRSIVSSEKKYRTIEEECMV 142 F + + + I + + + E R +V Sbjct: 119 IFGLLQTEEYARAIVMSGPFRNNVDVMVAERMRRQEVLTREHPPRLVV 166 >gi|229827273|ref|ZP_04453342.1| hypothetical protein GCWU000182_02659 [Abiotrophia defectiva ATCC 49176] gi|229788891|gb|EEP25005.1| hypothetical protein GCWU000182_02659 [Abiotrophia defectiva ATCC 49176] Length = 115 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRIR R ++Q KL E L + + K EKG + + ++ +S + + + Sbjct: 7 VEIGKRIRSLRYESKLTQTKLSEYLSLDQSMIAKIEKGERNITSDVIEKLSALFCCTVDY 66 Query: 73 FFDVS 77 Sbjct: 67 LLFGE 71 >gi|227539648|ref|ZP_03969697.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227240561|gb|EEI90576.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 110 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 9/115 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+IRL R G SQE + + L I+ K E G+ V SRL IS++ + Sbjct: 3 ALGKKIRLLRHQKGWSQEDVAKRLDISIPAFSKIETGITDVNLSRLNQISKLFSLSVVQL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 S S E+ + ++ R I ++++K+I+L + Sbjct: 63 LSTSD------SEEDKQYANELADMSKKLQVRETEVI---ELQKKVIDLYEQLHK 108 >gi|225861745|ref|YP_002743254.1| transcriptional activator [Streptococcus pneumoniae Taiwan19F-14] gi|298229349|ref|ZP_06963030.1| transcriptional activator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255903|ref|ZP_06979489.1| transcriptional activator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503691|ref|YP_003725631.1| transcriptional activator [Streptococcus pneumoniae TCH8431/19A] gi|225726429|gb|ACO22280.1| transcriptional activator [Streptococcus pneumoniae Taiwan19F-14] gi|298239286|gb|ADI70417.1| transcriptional activator [Streptococcus pneumoniae TCH8431/19A] Length = 287 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R LG+SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELGLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + S++S+ + + + L Y +I+ Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYDNL-EYIYRIE 98 >gi|220904000|ref|YP_002479312.1| putative phage repressor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868299|gb|ACL48634.1| putative phage repressor [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 225 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R RR LGM ++ + +G++ +QKYE G +++ L+ + + Sbjct: 15 QRLRQRREELGMHKQDMAARVGVSLTTIQKYENGQM-PKGEYAVRLADTLDCSLDWLLAG 73 Query: 77 SPTVCSD 83 Sbjct: 74 KGAADGS 80 >gi|212383451|ref|YP_002302334.1| hypothetical protein pRJ6_005 [Staphylococcus aureus] gi|211907413|gb|AAK73548.2|AF241888_1 unknown [Staphylococcus aureus] Length = 82 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I+ R + SQ++L + +T Q + E G I++ L+ ++ F Sbjct: 16 NNIKHYRKEMNFSQQELANKVEVTRQTISLIELGKYNPTIKLCISIAKALQVDLNKLFWE 75 Query: 77 SPTVCSD 83 + Sbjct: 76 MSDNSEE 82 >gi|167634630|ref|ZP_02392950.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170687459|ref|ZP_02878676.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|254684118|ref|ZP_05147978.1| MerR family transcriptional regulator [Bacillus anthracis str. CNEVA-9066] gi|254741503|ref|ZP_05199190.1| MerR family transcriptional regulator [Bacillus anthracis str. Kruger B] gi|167530082|gb|EDR92817.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170668654|gb|EDT19400.1| DNA-binding protein [Bacillus anthracis str. A0465] Length = 181 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKAFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + E + ++ Sbjct: 61 LLLEQKDRLKVVKKVERKYSVYGKDEQRIEHV 92 >gi|163815521|ref|ZP_02206894.1| hypothetical protein COPEUT_01686 [Coprococcus eutactus ATCC 27759] gi|158449158|gb|EDP26153.1| hypothetical protein COPEUT_01686 [Coprococcus eutactus ATCC 27759] Length = 112 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 44/111 (39%), Gaps = 10/111 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKRI+ R L ++QE+L E GI+ V + E G + L I+ L + + Sbjct: 7 GKRIKKIRKSLKLTQEQLAEKAGISAHFVYEIEHGQKTMSLYTLTDIALALGTSTDYILF 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 S + + D + + L++ R I +V+S+ Sbjct: 67 GRTPDISSGARDVMINDDLSHIIETVPLSK----------RDAIKNIVKSV 107 >gi|154499014|ref|ZP_02037392.1| hypothetical protein BACCAP_03006 [Bacteroides capillosus ATCC 29799] gi|261366721|ref|ZP_05979604.1| transcriptional regulator, AraC family [Subdoligranulum variabile DSM 15176] gi|332655640|ref|ZP_08421260.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|150271854|gb|EDM99080.1| hypothetical protein BACCAP_03006 [Bacteroides capillosus ATCC 29799] gi|282571548|gb|EFB77083.1| transcriptional regulator, AraC family [Subdoligranulum variabile DSM 15176] gi|332515537|gb|EGJ45171.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 109 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 20/125 (16%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK ++I +G I++ R G +Q+ L E LG+T + E+G + + LQ Sbjct: 1 MREKK---DINIEIGGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQR 57 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + +L + ++ L L R I + RQ++ E Sbjct: 58 LCRLLGVSADRIIFGTDEPEAEA----------------LALARRISDIK-PEYRQQVQE 100 Query: 122 LVRSI 126 L+ +I Sbjct: 101 LLSAI 105 >gi|154500023|ref|ZP_02038061.1| hypothetical protein BACCAP_03681 [Bacteroides capillosus ATCC 29799] gi|150271621|gb|EDM98878.1| hypothetical protein BACCAP_03681 [Bacteroides capillosus ATCC 29799] Length = 118 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 42/132 (31%), Gaps = 16/132 (12%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G +R R ++QE+L + ++ +Q+ EK L+ +++V+ Sbjct: 1 MPIDDLTALGDALRAARKEKSLTQEQLADESHVSTKQIADIEKARRNPSYLILKALAKVI 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + D G + ++R+ ++ R Sbjct: 61 HLSLDSLM----------------YPDLSPDEAGQNEMKLLYMNCPPEMRETLLHHTRGF 104 Query: 127 VSSEKKYRTIEE 138 K+ E Sbjct: 105 AEELKELSKKLE 116 >gi|52142223|ref|YP_084606.1| DNA-binding protein; transcriptional regulator [Bacillus cereus E33L] gi|51975692|gb|AAU17242.1| DNA-binding protein; possible transcriptional regulator [Bacillus cereus E33L] Length = 374 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKVIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 P + + + + + ++ + + + ++ I+ + Sbjct: 64 LISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMECRKIIKKYYSCFPLLIQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDTDRRIEILEEAM 141 >gi|315127131|ref|YP_004069134.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315015645|gb|ADT68983.1| putative transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 99 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R G++Q++LG LG+ + +YEKG + ++ I++ L+ P+++ Sbjct: 7 SRLKSARKAAGLTQQQLGMALGMEPNTASARMNQYEKGKHAPDFLTMKRIAKELDVPVAY 66 Query: 73 FFDVSP 78 F+ Sbjct: 67 FYCEED 72 >gi|300855490|ref|YP_003780474.1| hypothetical protein CLJU_c23140 [Clostridium ljungdahlii DSM 13528] gi|300435605|gb|ADK15372.1| conserved hypothetical protein with a HTH motif [Clostridium ljungdahlii DSM 13528] Length = 184 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 46/98 (46%), Gaps = 2/98 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G +++ R+ +S + + + G++ + + E+G++ S L IS L+ Sbjct: 4 LNLIIGTKLKNIRLRRNLSLDDVSKLTGVSKGMLGQIERGLSNPTVSTLWKISTGLKVSF 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 S F + I +++++ + + ++L F Sbjct: 64 SSFINEKEDDLKVI--HQDDIVPLLEDNNRMKLYSIFP 99 >gi|257053231|ref|YP_003131064.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] gi|256691994|gb|ACV12331.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] Length = 75 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 24/68 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 + R G+SQ L E + +T Q + E + ++ E P+ F Sbjct: 5 LTEYREASGLSQRALAEHVAVTRQTINAVEGNRYDPSVELVFKLAAFFEVPVEDLFHPDV 64 Query: 79 TVCSDISS 86 + +S Sbjct: 65 ELERTVSE 72 >gi|253570557|ref|ZP_04847965.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|251839506|gb|EES67589.1| transcriptional regulator [Bacteroides sp. 1_1_6] Length = 73 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 29/70 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + +I++ R + +SQE+L +G+T + + E G I+ P+ Sbjct: 3 NKELLNKIKVYRAMKNISQEELAIAIGVTRKTINTVETGKFIPSTVLALRIARYFGVPVE 62 Query: 72 FFFDVSPTVC 81 F ++ Sbjct: 63 EIFVLNDEAS 72 >gi|291300667|ref|YP_003511945.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569887|gb|ADD42852.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 513 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + +G IR R G++Q +L + LG + V + E+G + L Sbjct: 1 MSETPARTEDILRRIGTLIRDARKHRGLTQTQLADLLGTSQSAVNRIERGAQNLSVDMLN 60 Query: 61 HISEVLE 67 +SE L+ Sbjct: 61 RVSEALD 67 >gi|225571452|ref|ZP_03780448.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM 15053] gi|225159928|gb|EEG72547.1| hypothetical protein CLOHYLEM_07550 [Clostridium hylemonae DSM 15053] Length = 377 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 27/77 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R GMSQE L + I+ + + E S I L + F Sbjct: 2 NRVKEIRKERGMSQETLARYIEISRKYLSMIECQNATPSISIAMRIGGALGVSVDKIFLD 61 Query: 77 SPTVCSDISSEENNVMD 93 +V + + +D Sbjct: 62 LSSVETIAYPKPIRYID 78 >gi|187780191|ref|ZP_02996664.1| hypothetical protein CLOSPO_03787 [Clostridium sporogenes ATCC 15579] gi|187773816|gb|EDU37618.1| hypothetical protein CLOSPO_03787 [Clostridium sporogenes ATCC 15579] Length = 183 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R +S +L E GI+ + + EKG + L I++ L+ P Sbjct: 3 INSIIAENLKTLRTERNLSLGQLAELSGISKVMLSQIEKGDTNPTINTLWKIAKGLKVPY 62 Query: 71 SFFFDVSPTVC 81 + + Sbjct: 63 TSLLEQKEHDT 73 >gi|196038875|ref|ZP_03106182.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|228926817|ref|ZP_04089885.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|301053321|ref|YP_003791532.1| transcriptional regulator [Bacillus anthracis CI] gi|196030020|gb|EDX68620.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|228832930|gb|EEM78499.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|300375490|gb|ADK04394.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 403 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDDDEIVELIQ 74 >gi|167463701|ref|ZP_02328790.1| hypothetical phagelike protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384406|ref|ZP_08058092.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150764|gb|EFX44224.1| transcriptional regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 217 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+ I+L R G++Q++L LG+ + + K+E G N ++ +SE + + Sbjct: 5 GEIIKLLREQRGLTQQQLANILGLKTYTTITKWESGDNFPKGKDIKRLSEFFKVSSDYIL 64 Query: 75 DVSPTVC 81 + + Sbjct: 65 GLEKSNS 71 >gi|52143677|ref|YP_083152.1| transcriptional regulator [Bacillus cereus E33L] gi|51977146|gb|AAU18696.1| transcriptional regulator [Bacillus cereus E33L] Length = 403 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDDDEIVELIQ 74 >gi|39937455|ref|NP_949731.1| XRE family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|192293238|ref|YP_001993843.1| XRE family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|39651314|emb|CAE29836.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris CGA009] gi|192286987|gb|ACF03368.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris TIE-1] Length = 480 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 37/100 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R LG+SQ ++ E LGI+ V E+ V A L ++E + + Sbjct: 9 LFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDLRD 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +E + F Q R ++ Sbjct: 69 LATADEDRFFAELNEIFSDPLFRQIDLPKQELRDLAELCP 108 >gi|23100594|ref|NP_694061.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22778827|dbj|BAC15095.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 66 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++L RM ++Q++L GIT Q V EKG I++ LE ++ F Sbjct: 3 NRVKLTRMEKNLTQQQLAARTGITRQTVGLIEKGQYNPSLQLCIKIAKELEVTLNDLFWE 62 Query: 77 SPTV 80 Sbjct: 63 ENNS 66 >gi|120596920|ref|YP_961494.1| XRE family transcriptional regulator [Shewanella sp. W3-18-1] gi|146294947|ref|YP_001185371.1| XRE family transcriptional regulator [Shewanella putrefaciens CN-32] gi|120557013|gb|ABM22940.1| transcriptional regulator, XRE family [Shewanella sp. W3-18-1] gi|145566637|gb|ABP77572.1| transcriptional regulator, XRE family [Shewanella putrefaciens CN-32] gi|319424511|gb|ADV52585.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] Length = 509 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A+ L I+ V Sbjct: 13 FLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAAMLAVIAAVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + + +F D +P + Sbjct: 73 QKEVDWFLDDAPEESAITPD 92 >gi|30261788|ref|NP_844165.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47527021|ref|YP_018370.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49184620|ref|YP_027872.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|65319065|ref|ZP_00392024.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165869450|ref|ZP_02214109.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167633384|ref|ZP_02391709.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167638745|ref|ZP_02397020.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170686089|ref|ZP_02877311.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170706409|ref|ZP_02896869.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650447|ref|ZP_02933414.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190566266|ref|ZP_03019184.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227815444|ref|YP_002815453.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229604650|ref|YP_002866175.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254683285|ref|ZP_05147146.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254723868|ref|ZP_05185654.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254734638|ref|ZP_05192350.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254741048|ref|ZP_05198736.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755290|ref|ZP_05207324.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254759827|ref|ZP_05211851.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30256016|gb|AAP25651.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47502169|gb|AAT30845.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49178547|gb|AAT53923.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164714890|gb|EDR20408.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167513209|gb|EDR88580.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167531422|gb|EDR94100.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170128507|gb|EDS97374.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170669786|gb|EDT20527.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172083591|gb|EDT68651.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190562401|gb|EDV16368.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227006595|gb|ACP16338.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229269058|gb|ACQ50695.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 403 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDDDEIVELIQ 74 >gi|315121942|ref|YP_004062431.1| hypothetical protein CKC_00960 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495344|gb|ADR51943.1| hypothetical protein CKC_00960 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 193 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 2/76 (2%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 KKI NP +G R++ R+ +G++Q++ G +G++ V E G I Sbjct: 87 EKKIFNP--RAIGARLKAIRLKMGLTQKEFGLLIGLSSVGVGNIENGHRTPEIKTALKIK 144 Query: 64 EVLESPISFFFDVSPT 79 L P+ + + Sbjct: 145 RALGKPLDWIYFGDEP 160 Score = 40.6 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 1/112 (0%) Query: 4 NKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K++ N +D +G+R + R + + E V KYE G + + Sbjct: 2 EKELENTLDWREIGQRFKEVRERHNYKRSMIMEKTDDQGGAVYKYEAGAQPASTNYALFL 61 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + +D + S+ E + + + L+ R + + + Sbjct: 62 RNTFGASFDWLYDGVENLRSERDRTEKKIFNPRAIGARLKAIRLKMGLTQKE 113 >gi|311897650|dbj|BAJ30058.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 201 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 28/72 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R RR+ ++ E +G++ + + E G + L ++ + ++ Sbjct: 15 LGARLRERRVSSRLTLEVAAARVGLSPAYLSRLETGRRQPSLPVLLGLARAYGTSVAELL 74 Query: 75 DVSPTVCSDISS 86 P + Sbjct: 75 GEQPGEPDPVIR 86 >gi|312868183|ref|ZP_07728385.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096288|gb|EFQ54530.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 158 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 1 MIGENIKTLRKAHNLTQPEFAKIVGISRNSLSRYENGASSVSTELIDRICQKFNVSYIDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + ++ I L + + Sbjct: 61 VGEEKLLTPVEDYQLTLKIEVIKERGANILAQLYR 95 >gi|302064024|ref|ZP_07255565.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato K40] Length = 120 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 4/97 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R +SQ L E +G V +YE+G G +L I+ V Sbjct: 11 VGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATVFNVAPGELL 70 Query: 75 ----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 DV T + E + + +P+ L+ F Sbjct: 71 PGGQDVLRTRLLSLRQEITERIAEVDSPEYLEEMLNF 107 >gi|289640577|ref|ZP_06472749.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289509466|gb|EFD30393.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 202 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR RR LG+SQ L + G+ +Q+++YE G + S I++ L ++ Sbjct: 5 IRQRRAELGISQVDLAKAAGVDKRQIRRYEAGEQQPVLSVAVAIAKALGISVAELAGEHG 64 Query: 79 TVCSDISSEENNVMDFIS 96 + ++ F+ Sbjct: 65 QRVDLTGTWWSSWQTFMD 82 >gi|316935911|ref|YP_004110893.1| XRE family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603625|gb|ADU46160.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris DX-1] Length = 480 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 37/100 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG R R R LG+SQ ++ E LGI+ V E+ V A L ++E + + Sbjct: 9 LFVGPRFRRIRQQLGLSQTQIAEGLGISPSYVNLIERNQRPVTAQILLRLAETYDLDLRD 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +E + F Q R ++ Sbjct: 69 LATADEDRFFAELNEIFSDPLFRQIDLPKQELRDLAELCP 108 >gi|268610412|ref|ZP_06144139.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 252 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 29/56 (51%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I R GMSQE+L E + +T Q V ++E G + L+ +S++ + I+ Sbjct: 7 ILELRNKKGMSQEQLAEKVFVTRQAVSRWETGETQPNTETLKLLSQLFDVSINTLL 62 >gi|269102614|ref|ZP_06155311.1| putative cI prophage repressor protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162512|gb|EEZ41008.1| putative cI prophage repressor protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 220 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 1/94 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF- 72 VG R++ R G+SQ+ L + G +V YE G+ + +++ L Sbjct: 6 EVGLRLKQFRAKRGISQKDLADLCGWGASRVSNYESGIRSISLDDADTLAKHLGIKAYQI 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 FD S S + + ++ L + Sbjct: 66 LFDDSELPELMNISTIDIQPSYQNSFPVLSSVQA 99 >gi|256617058|ref|ZP_05473904.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256596585|gb|EEU15761.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] Length = 87 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R G+SQ +L + + +T Q V ++ G +++ +SE+L PI+ F Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELFSD 80 >gi|169335193|ref|ZP_02862386.1| hypothetical protein ANASTE_01601 [Anaerofustis stercorihominis DSM 17244] gi|169257931|gb|EDS71897.1| hypothetical protein ANASTE_01601 [Anaerofustis stercorihominis DSM 17244] Length = 120 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 2/109 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG +I+ R G +QE L E + ++ + E G+ ++ + I++ L + Sbjct: 6 KKVGGKIKEARKKQGYTQETLAEIIDLSASHLSHVESGIAKISLPTIVAIAKTLNVSLDD 65 Query: 73 FFDVSPTVCSD--ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + S E + + + + L + +++ I Sbjct: 66 LLSLEIDNQSIYLTLKELDRIFKNCTVKEKNLLIHNLNILKQYDLKEYI 114 >gi|166031013|ref|ZP_02233842.1| hypothetical protein DORFOR_00694 [Dorea formicigenerans ATCC 27755] gi|166029280|gb|EDR48037.1| hypothetical protein DORFOR_00694 [Dorea formicigenerans ATCC 27755] Length = 140 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 5/134 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + N I + + +R+ R + Q++ L I+ Q YE+G L+ Sbjct: 1 MEETSMAN---IQLTENLRILRERSNLKQDEFSRYLNISRQTYSNYERGTRTPDLELLKS 57 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I++ I + S + + + + + + I + D ++ K++ Sbjct: 58 IADFYHITIDELLFCNGYKIPLYSMQPDRISEGEIPYIKCKKSDNIIYLTDEEL--KLLL 115 Query: 122 LVRSIVSSEKKYRT 135 L R+ ++ T Sbjct: 116 LFRAASDEVRQIIT 129 >gi|126011086|ref|YP_001039911.1| putative immunity repressor protein [Streptococcus phage phi3396] gi|124389355|gb|ABN10797.1| putative immunity repressor protein [Streptococcus phage phi3396] Length = 112 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 37/105 (35%), Gaps = 1/105 (0%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R LG++Q + + YE + +++ I+ ++ Sbjct: 4 RIKYLRQALGLTQSAFAAKAHVNKNMIANYESQNSNPSLKQIEKIALAFNVEPAWLAGWD 63 Query: 78 PTVCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIE 121 + + V D + P+ + + I + R+++ + Sbjct: 64 TKPQIVVKEKIVKVQDPSARIPNDWKNDECGRLIKWKESRKQLYK 108 >gi|75674463|ref|YP_316884.1| XRE family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419333|gb|ABA03532.1| transcriptional regulator, XRE family [Nitrobacter winogradskyi Nb-255] Length = 400 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 41/107 (38%), Gaps = 5/107 (4%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+R+R+ R ++Q + +G + E+G R+ LQ ++ + + Sbjct: 16 DAEIGERLRIAREAAKLTQAEAAAAIGAARTTIVAIEQGKRRIQIDELQKLATSYRTSAN 75 Query: 72 FFFDVSPTVCSDIS-----SEENNVMDFISTPDGLQLNRYFIQIDDV 113 + SE ++ ++ L R +++++ Sbjct: 76 AILRKEAVHLDMVPRFRKLSESSDHAVEQASRLLNDLVRAEVELENA 122 >gi|27366645|ref|NP_762172.1| putative transcriptional regulator [Vibrio vulnificus CMCP6] gi|320158536|ref|YP_004190914.1| putative transcriptional regulator [Vibrio vulnificus MO6-24/O] gi|27358211|gb|AAO07162.1|AE016808_182 Predicted transcriptional regulator [Vibrio vulnificus CMCP6] gi|319933848|gb|ADV88711.1| predicted transcriptional regulator [Vibrio vulnificus MO6-24/O] Length = 207 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGQRIKEVRSRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLKIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|15672114|ref|NP_266288.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|12722980|gb|AAK04230.1|AE006251_6 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] Length = 106 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R +R I G++Q++LG+ L + Q V +E G +Q ++ V + I Sbjct: 42 SNLRQKRAIAGLTQKELGKLLYSSKQAVCNWEHGRREPSLEVVQEMANVFKCSIDDLLKD 101 Query: 77 SPT 79 S Sbjct: 102 SEN 104 >gi|116669412|ref|YP_830345.1| XRE family transcriptional regulator [Arthrobacter sp. FB24] gi|116609521|gb|ABK02245.1| transcriptional regulator, XRE family with cupin sensor [Arthrobacter sp. FB24] Length = 191 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 34/79 (43%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ + + +G RIR R ++ E++ + G+T + + E+ + + L + +VL Sbjct: 8 PSNIPVAIGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVASLVTLCQVLS 67 Query: 68 SPISFFFDVSPTVCSDISS 86 I F T + Sbjct: 68 ISIGDLFAAPETHLTKKDE 86 >gi|331008014|ref|ZP_08331043.1| DNA-binding protein [gamma proteobacterium IMCC1989] gi|330418172|gb|EGG92809.1| DNA-binding protein [gamma proteobacterium IMCC1989] Length = 78 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GK IR +R LG SQE G+ + E+G + + IS L+ S Sbjct: 12 KQLGKVIRDKRKALGYSQEAFASECGVHRTYMGAVERGERNISIMNIIRISNRLDILPSQ 71 Query: 73 FFDVSP 78 S Sbjct: 72 LLSDSD 77 >gi|325262228|ref|ZP_08128966.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324033682|gb|EGB94959.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 643 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 31/67 (46%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R + G +Q ++ E L I+ YE G L+ ISEVLE + F +P + Sbjct: 13 RKLKGYTQAQMAEKLEISRSTYTNYEIGNRSPDLETLERISEVLECSLDELFGKTPVRTA 72 Query: 83 DISSEEN 89 D+ SE Sbjct: 73 DMVSETP 79 >gi|297660613|ref|YP_003710324.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044] gi|297377489|gb|ADI39318.1| putative transcriptional regulator [Waddlia chondrophila WSU 86-1044] Length = 78 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Query: 1 MVGN--KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M + P+ G ++R+RR +G++QE+L E + V E+G + Sbjct: 1 MSKETHNRKKTPIRKAFGLKVRMRRFEIGITQEELAEKADLHPTYVGSVERGERNIALEN 60 Query: 59 LQHISEVLESPISFFF 74 + I++ L Sbjct: 61 IVAIAKGLGCSPKDLM 76 >gi|325674989|ref|ZP_08154676.1| DNA-binding protein [Rhodococcus equi ATCC 33707] gi|325554575|gb|EGD24250.1| DNA-binding protein [Rhodococcus equi ATCC 33707] Length = 182 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 11/109 (10%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E L E G+T + K E+G++ + I+ L++ +S F +P Sbjct: 5 LRSHRRRAGLTLEALAEDTGLTKSYLSKVERGISTPSIAVALKIARALDADVSQLFSDTP 64 Query: 79 -----------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + +++ V D I+T + + FI + R Sbjct: 65 DNSVMAIERHAERAQVDADDDSAVYDAIATRMIGKAMQPFIVHPTTQPR 113 >gi|239905667|ref|YP_002952406.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] gi|239795531|dbj|BAH74520.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] Length = 108 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 14/118 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + GKR+R R M+QE+L E G++ Q V + E+G ++ +S LE + Sbjct: 4 ILKVFGKRVRSLRRAKDMTQEQLAERAGLSLQSVGEIERGRGNPTLVNIERLSAALEEDL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + FD+ +L + +VR I+ + R ++ Sbjct: 64 ASLFDLGDVG-------------MTREQVQKELLELLAGASEEQVR-AILTMARVLIQ 107 >gi|194015499|ref|ZP_03054115.1| putative transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194012903|gb|EDW22469.1| putative transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 125 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 45/132 (34%), Gaps = 14/132 (10%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D GK + R G S+ + + LG+ +E G+ + + I+E+ Sbjct: 1 MDNLTGKILTELREKHGWSKSTVAKKLGLKAMSTYANWEYGLRKPDGEMIVKIAELYGVS 60 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIV 127 + +D ++ + F D + R++ I+ + I Sbjct: 61 TDYLLTGKDKGGTDADLADDPDLQI-----------AFKAASDFSEEARRQTIDFIHYIK 109 Query: 128 SSEKKYRTIEEE 139 EK+ ++ Sbjct: 110 EKEKQKGRQPKQ 121 >gi|169349492|ref|ZP_02866430.1| hypothetical protein CLOSPI_00210 [Clostridium spiroforme DSM 1552] gi|169293567|gb|EDS75700.1| hypothetical protein CLOSPI_00210 [Clostridium spiroforme DSM 1552] Length = 77 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + KRIR R ++Q+ L L ++ + +YE+G + L I+ ++ + + Sbjct: 1 MVIYKRIRDLREDKDLTQKDLANYLNVSQKSYSRYERGERTIAPEILSKIATFHDTTVDY 60 Query: 73 FFDVSPTVCS 82 + + + Sbjct: 61 LLNRTDDKTN 70 >gi|167771942|ref|ZP_02443995.1| hypothetical protein ANACOL_03315 [Anaerotruncus colihominis DSM 17241] gi|167665740|gb|EDS09870.1| hypothetical protein ANACOL_03315 [Anaerotruncus colihominis DSM 17241] Length = 120 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 42/125 (33%), Gaps = 13/125 (10%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KRI+ R L +Q++ + +GI + YE G N + + I + + Sbjct: 3 KRIKELRKALHFTQQEFADRIGIKRNTIANYETGRNDPIDAVISLICKEFNVNERWLRTG 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + ++ +E + + +++ I + + ++ + Sbjct: 63 EGEMFLQMTRDEE----------IAAFIGGALAKETDSFKKRFISM---LARLKESDWEV 109 Query: 137 EEECM 141 E + Sbjct: 110 LERMV 114 >gi|119963185|ref|YP_949637.1| helix-turn-helix domain-containing protein [Arthrobacter aurescens TC1] gi|119950044|gb|ABM08955.1| putative Helix-turn-helix domain protein [Arthrobacter aurescens TC1] Length = 206 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 36/100 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R+R R G + ++L E G++ + + E+G L IS+ L + Sbjct: 16 LAIGARVRQERQNRGWTLDQLAEAAGVSRRMIINMEQGAANPSVGTLLRISDALGVGLPA 75 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + ++ + S G + + D Sbjct: 76 LVESPRPKPVKVTRSGEGAALWTSEQGGRGVLVAGTESPD 115 >gi|148554640|ref|YP_001262222.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148499830|gb|ABQ68084.1| transcriptional regulator, XRE family with cupin sensor [Sphingomonas wittichii RW1] Length = 201 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+ IR RR L ++ ++ ++ + E+G L +++ L+ IS+F Sbjct: 18 GELIRDRRKRLKLTLNEVALRSDLSVSFISLAERGKATPSIVSLLRLAQALDVDISYFL 76 >gi|152974807|ref|YP_001374324.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023559|gb|ABS21329.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 107 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ PI Sbjct: 1 MIGERIKRLRLQRGISLTELAEKAGVAKSYISSIERNLQQNPSIQFLEKIAAVLQIPIDT 60 Query: 73 FFDVSPTVCSDISSE 87 + + + + SE Sbjct: 61 LLHDTTPLENQLDSE 75 >gi|331018707|gb|EGH98763.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 118 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 46/118 (38%), Gaps = 10/118 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R G +Q++L E +G + +YE+GV L + L+ + Sbjct: 7 FIGVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAEL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 +D S + + + + + ID + +I L I++S+ Sbjct: 67 L------PADGISSSREHLPKLRD----EAVKKILTIDSTDGLKDVIRLADWILNSQD 114 >gi|315149635|gb|EFT93651.1| helix-turn-helix protein [Enterococcus faecalis TX0012] gi|315171777|gb|EFU15794.1| helix-turn-helix protein [Enterococcus faecalis TX1342] Length = 232 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + +++ + ++ Sbjct: 66 WLLYGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMVRLSEEQL 107 >gi|302385374|ref|YP_003821196.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302196002|gb|ADL03573.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 184 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 26/63 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ V + I+ R MS + + G++ + + E+G + + I+ + P Sbjct: 4 INSIVAENIKRLRTQRKMSLDAAAKASGVSKSMLGQIERGEVNPTIAMVWKIAYGFKVPF 63 Query: 71 SFF 73 + Sbjct: 64 TEL 66 >gi|255531717|ref|YP_003092089.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344701|gb|ACU04027.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 104 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 34/79 (43%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DINV +++R R G +Q + L I+ K E G+ + RL+ ++ +L + Sbjct: 3 DINVSQKLRALRKKRGWTQSDMAAQLDISVPAYSKVECGMTELTLGRLRQLAVILGVKVC 62 Query: 72 FFFDVSPTVCSDISSEENN 90 + D V + E Sbjct: 63 WLLDEDEMVLHQENEELKE 81 >gi|257062841|ref|YP_003142513.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256790494|gb|ACV21164.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 369 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++G I R ++Q+ L LG+T V K+E G + L I+ + I Sbjct: 5 ISIGTTIYRLRKEARLTQDGLAMHLGVTKASVSKWENGQSYPDIELLPKIAAYFDITIDQ 64 Query: 73 FFDVSP 78 P Sbjct: 65 LIGYEP 70 >gi|227874017|ref|ZP_03992229.1| DNA-binding protein [Oribacterium sinus F0268] gi|227840133|gb|EEJ50551.1| DNA-binding protein [Oribacterium sinus F0268] Length = 203 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 12/107 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I R GM+Q +L E LGI+ + V K+E G + + + + L+ ++ Sbjct: 4 IKIGKFIASCRKEEGMTQAELAEKLGISDRAVSKWETGKSMPDSGIMLELCGFLKINVNE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + + + + R+ + Sbjct: 64 LLSGERIMAE------------FYNKQLEDNLLAMKREVEERDRRAL 98 >gi|223043812|ref|ZP_03613854.1| DNA-binding protein [Staphylococcus capitis SK14] gi|222442716|gb|EEE48819.1| DNA-binding protein [Staphylococcus capitis SK14] Length = 179 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++R R I +QE+L E ++ + + E +I EVL + S Sbjct: 1 MDIGYKLRNLRRIKNFTQEELAERTDLSKGYISQIESQHASPSIETFLNILEVLGTSASD 60 Query: 73 FFDVSPTVC 81 FF P+ Sbjct: 61 FFQERPSEK 69 >gi|167580903|ref|ZP_02373777.1| transcriptional regulator, XRE family protein [Burkholderia thailandensis TXDOH] Length = 132 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 16/122 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I +R G++Q KL E + + + + ++E+G RLQ +S+ L+ + Sbjct: 21 VGTAIAEQRRARGLTQAKLAEMIDLEQEAISRWERGTRMPTLHRLQQLSDALDCSVDQLL 80 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 D + + +D + D R+ ++ V+ K R Sbjct: 81 QRGSKRPDDQLAMIADALDGL----------------DGDERELVVNFVQQFADMLKARR 124 Query: 135 TI 136 + Sbjct: 125 SP 126 >gi|111657106|ref|ZP_01407894.1| hypothetical protein SpneT_02001666 [Streptococcus pneumoniae TIGR4] gi|116517019|ref|YP_816720.1| transcriptional repressor, putative [Streptococcus pneumoniae D39] gi|148985331|ref|ZP_01818554.1| hypothetical protein CGSSp3BS71_08986 [Streptococcus pneumoniae SP3-BS71] gi|148989546|ref|ZP_01820905.1| hypothetical protein CGSSp6BS73_05195 [Streptococcus pneumoniae SP6-BS73] gi|148990563|ref|ZP_01821689.1| hypothetical protein CGSSp6BS73_01218 [Streptococcus pneumoniae SP6-BS73] gi|148993017|ref|ZP_01822611.1| hypothetical protein CGSSp9BS68_10015 [Streptococcus pneumoniae SP9-BS68] gi|148997524|ref|ZP_01825129.1| hypothetical protein CGSSp11BS70_01512 [Streptococcus pneumoniae SP11-BS70] gi|149002814|ref|ZP_01827740.1| hypothetical protein CGSSp14BS69_03738 [Streptococcus pneumoniae SP14-BS69] gi|149011664|ref|ZP_01832860.1| hypothetical protein CGSSp19BS75_06847 [Streptococcus pneumoniae SP19-BS75] gi|168486119|ref|ZP_02710627.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|168489588|ref|ZP_02713787.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|168491326|ref|ZP_02715469.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|168493326|ref|ZP_02717469.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|168575882|ref|ZP_02721797.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|169834092|ref|YP_001694857.1| hypothetical protein SPH_1553 [Streptococcus pneumoniae Hungary19A-6] gi|194398183|ref|YP_002038070.1| hypothetical protein SPG_1363 [Streptococcus pneumoniae G54] gi|221232161|ref|YP_002511314.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225854869|ref|YP_002736381.1| hypothetical protein SPJ_1321 [Streptococcus pneumoniae JJA] gi|225857057|ref|YP_002738568.1| hypothetical protein SPP_1441 [Streptococcus pneumoniae P1031] gi|225860797|ref|YP_002742306.1| hypothetical protein SPT_0851 [Streptococcus pneumoniae Taiwan19F-14] gi|237650477|ref|ZP_04524729.1| transcriptional repressor, putative [Streptococcus pneumoniae CCRI 1974] gi|237821792|ref|ZP_04597637.1| transcriptional repressor, putative [Streptococcus pneumoniae CCRI 1974M2] gi|298229247|ref|ZP_06962928.1| transcriptional repressor, putative [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255692|ref|ZP_06979278.1| transcriptional repressor, putative [Streptococcus pneumoniae str. Canada MDR_19A] gi|303254577|ref|ZP_07340681.1| transcriptional repressor, putative [Streptococcus pneumoniae BS455] gi|303259019|ref|ZP_07344998.1| hypothetical protein CGSSp9vBS293_11153 [Streptococcus pneumoniae SP-BS293] gi|303261703|ref|ZP_07347650.1| hypothetical protein CGSSp14BS292_04840 [Streptococcus pneumoniae SP14-BS292] gi|303264372|ref|ZP_07350292.1| hypothetical protein CGSSpBS397_10715 [Streptococcus pneumoniae BS397] gi|303265829|ref|ZP_07351726.1| hypothetical protein CGSSpBS457_02492 [Streptococcus pneumoniae BS457] gi|303268162|ref|ZP_07353961.1| hypothetical protein CGSSpBS458_11388 [Streptococcus pneumoniae BS458] gi|307068076|ref|YP_003877042.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|116077595|gb|ABJ55315.1| transcriptional repressor, putative [Streptococcus pneumoniae D39] gi|147756579|gb|EDK63620.1| hypothetical protein CGSSp11BS70_01512 [Streptococcus pneumoniae SP11-BS70] gi|147759108|gb|EDK66102.1| hypothetical protein CGSSp14BS69_03738 [Streptococcus pneumoniae SP14-BS69] gi|147764095|gb|EDK71027.1| hypothetical protein CGSSp19BS75_06847 [Streptococcus pneumoniae SP19-BS75] gi|147922529|gb|EDK73648.1| hypothetical protein CGSSp3BS71_08986 [Streptococcus pneumoniae SP3-BS71] gi|147924201|gb|EDK75301.1| hypothetical protein CGSSp6BS73_01218 [Streptococcus pneumoniae SP6-BS73] gi|147925089|gb|EDK76170.1| hypothetical protein CGSSp6BS73_05195 [Streptococcus pneumoniae SP6-BS73] gi|147928218|gb|EDK79235.1| hypothetical protein CGSSp9BS68_10015 [Streptococcus pneumoniae SP9-BS68] gi|168996594|gb|ACA37206.1| conserved domain protein [Streptococcus pneumoniae Hungary19A-6] gi|183570815|gb|EDT91343.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|183571900|gb|EDT92428.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|183574439|gb|EDT94967.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|183576644|gb|EDT97172.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|183578217|gb|EDT98745.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194357850|gb|ACF56298.1| conserved domain protein [Streptococcus pneumoniae G54] gi|220674622|emb|CAR69186.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225723584|gb|ACO19437.1| conserved domain protein [Streptococcus pneumoniae JJA] gi|225724319|gb|ACO20171.1| conserved domain protein [Streptococcus pneumoniae P1031] gi|225727030|gb|ACO22881.1| conserved domain protein [Streptococcus pneumoniae Taiwan19F-14] gi|301794461|emb|CBW36896.1| putative DNA-binding protein [Streptococcus pneumoniae INV104] gi|301800287|emb|CBW32907.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141] gi|301802162|emb|CBW34900.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302598545|gb|EFL65587.1| transcriptional repressor, putative [Streptococcus pneumoniae BS455] gi|302637283|gb|EFL67771.1| hypothetical protein CGSSp14BS292_04840 [Streptococcus pneumoniae SP14-BS292] gi|302639962|gb|EFL70418.1| hypothetical protein CGSSpBS293_11153 [Streptococcus pneumoniae SP-BS293] gi|302642241|gb|EFL72589.1| hypothetical protein CGSSpBS458_11388 [Streptococcus pneumoniae BS458] gi|302644564|gb|EFL74814.1| hypothetical protein CGSSpBS457_02492 [Streptococcus pneumoniae BS457] gi|302646184|gb|EFL76411.1| hypothetical protein CGSSpBS397_10715 [Streptococcus pneumoniae BS397] gi|306409613|gb|ADM85040.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] gi|327389609|gb|EGE87954.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] gi|332073729|gb|EGI84208.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] gi|332075003|gb|EGI85475.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] gi|332200864|gb|EGJ14936.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] gi|332203252|gb|EGJ17320.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 69 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R+ ++Q +L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 78 PTVC 81 Sbjct: 66 EDEK 69 >gi|73748186|ref|YP_307425.1| putative DNA-binding protein [Dehalococcoides sp. CBDB1] gi|147668961|ref|YP_001213779.1| helix-turn-helix domain-containing protein [Dehalococcoides sp. BAV1] gi|289432236|ref|YP_003462109.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|73659902|emb|CAI82509.1| putative DNA-binding protein [Dehalococcoides sp. CBDB1] gi|146269909|gb|ABQ16901.1| helix-turn-helix domain protein [Dehalococcoides sp. BAV1] gi|288945956|gb|ADC73653.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 133 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 49/119 (41%), Gaps = 4/119 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR +R+ + ++ ++L ++ + + E+G A L+ I+ L F Sbjct: 13 LGEIIRQQRVKIPLTLQELAAKTSVSPSHLGRIERGERFPSARILKRIAHPLGFEEDELF 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK----IIELVRSIVSS 129 ++ + S ++ S P L + + Q+ I+ +++SI S Sbjct: 73 TLAGYLTPQKDSISEMEAEYTSIPRQLDPYVAKVLAQEPIELQRAVIAILAMLKSISKS 131 >gi|315174882|gb|EFU18899.1| helix-turn-helix protein [Enterococcus faecalis TX1346] Length = 232 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + ++ + ++ Sbjct: 66 WLLYGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMGRLSEEQL 107 >gi|289422857|ref|ZP_06424689.1| DNA-binding protein [Peptostreptococcus anaerobius 653-L] gi|289156719|gb|EFD05352.1| DNA-binding protein [Peptostreptococcus anaerobius 653-L] Length = 215 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 33/68 (48%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +++++G++I+ R ++QE+L ++ + + E + + L I ++L + Sbjct: 34 AINMDIGEKIKRLRTGKQLTQEELANRCELSKGFISQVENNLTSPSIATLIDILDILGTN 93 Query: 70 ISFFFDVS 77 + FF Sbjct: 94 LKEFFSED 101 >gi|225574885|ref|ZP_03783495.1| hypothetical protein RUMHYD_02963 [Blautia hydrogenotrophica DSM 10507] gi|225037908|gb|EEG48154.1| hypothetical protein RUMHYD_02963 [Blautia hydrogenotrophica DSM 10507] Length = 98 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R ++Q++L E L I+ + YE G + L ++ + I + Sbjct: 28 QRIQNLREDADLTQKELSEYLHISPRTYSHYENGTRNIPVEMLIRLANYYNTSIDYLVGR 87 Query: 77 SPTV 80 + Sbjct: 88 TDNP 91 >gi|223983720|ref|ZP_03633892.1| hypothetical protein HOLDEFILI_01173 [Holdemania filiformis DSM 12042] gi|223964312|gb|EEF68652.1| hypothetical protein HOLDEFILI_01173 [Holdemania filiformis DSM 12042] Length = 119 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/97 (12%), Positives = 29/97 (29%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G+ I+ R G+S+ +L + + I + + E + +L+ + Sbjct: 11 KAFGQAIKAARKAKGISRNQLADKMNIAPRYIASIENSGQHPSLQIFYELVTLLDVSVDQ 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 FF + + L + + Sbjct: 71 FFFPDKETDKSTQRRQLETLLDSMDNKDLTVITATAK 107 >gi|253988431|ref|YP_003039787.1| phage regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988437|ref|YP_003039793.1| phage regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638957|emb|CAR67572.1| putative phage regulatory protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779881|emb|CAQ83042.1| putative phage regulator [Photorhabdus asymbiotica] gi|253779887|emb|CAQ83048.1| putative phage regulator [Photorhabdus asymbiotica] Length = 133 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 30/57 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+RL R +SQ +L E LG+ + ++EKG + + I++VL+ I Sbjct: 18 ERLRLLREARNLSQVRLAELLGVDPRAYNRWEKGASAPHLETVIKIADVLQVTIDEL 74 >gi|295835325|ref|ZP_06822258.1| helix-turn-helix domain-containing protein [Streptomyces sp. SPB74] gi|197696396|gb|EDY43329.1| helix-turn-helix domain-containing protein [Streptomyces sp. SPB74] Length = 187 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 2/105 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+R R GM+ L GI+ + + E G+ R L ++ + Sbjct: 4 VGERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELV 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDDVKVRQ 117 P + +E P + + I + R+ Sbjct: 64 GTRPVADPRVRAEPIVRHQRRMYPLSRHPGGVQAYRMIIEGGSRE 108 >gi|167757755|ref|ZP_02429882.1| hypothetical protein CLOSCI_00086 [Clostridium scindens ATCC 35704] gi|167664637|gb|EDS08767.1| hypothetical protein CLOSCI_00086 [Clostridium scindens ATCC 35704] Length = 120 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 36/110 (32%), Gaps = 2/110 (1%) Query: 2 VGNKKIPNPV--DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 + K P P+ G I+ R G S++ + + L I+ + + E + Sbjct: 1 MNMTKRPVPIYDFKAFGAAIKAARNEYGESRKTVSDALYISPRYLANIENKGQQPSLQVF 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + FF + + + + + GL++ + Sbjct: 61 YDLVTRYHISVDQFFFPNDNAEKSTQRRQLDTLLDSMSDKGLRIVAATAK 110 >gi|163932156|ref|YP_001642346.1| cl repressor [Lactobacillus johnsonii prophage Lj771] gi|163562110|gb|ABY26966.1| cl repressor [Lactobacillus johnsonii prophage Lj771] Length = 118 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/109 (12%), Positives = 40/109 (36%), Gaps = 5/109 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R G S+ + + LG+ +E G++ + I+ + + + Sbjct: 6 NKLKQLREGKGWSKTNVAKHLGVRLSTYANWEYGISEPDIETINQIATLYDVSNGYLMGN 65 Query: 77 SPTVCSDISS-EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + + + D + G + +D+ V + I+E + Sbjct: 66 NNNGKEENETKSVDLEKDPVVLSYGGRPVSE----EDMDVIKAILERHK 110 >gi|158320320|ref|YP_001512827.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140519|gb|ABW18831.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 130 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R S + E G++ + + E + A LQ I+ LE + Sbjct: 1 MTLGEKIRALRKEKRYSIMNIRELTGLSKSTISEIENDKSSPTAETLQKIANALEVTVDT 60 Query: 73 FFDVSPTVCS 82 FF S Sbjct: 61 FFKDDDHDES 70 >gi|75762322|ref|ZP_00742202.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218897473|ref|YP_002445884.1| DNA-binding protein [Bacillus cereus G9842] gi|228904512|ref|ZP_04068598.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] gi|74490185|gb|EAO53521.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218544400|gb|ACK96794.1| DNA-binding protein [Bacillus cereus G9842] gi|228855117|gb|EEM99690.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 4222] Length = 184 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 1/129 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF + T ++ N G D + ++ L+ SS + Sbjct: 63 NFF-LEDTSTEELVVRANQRKKITFPESGNVSYELLSPNLDGSLELALMNLLPQTASSME 121 Query: 132 KYRTIEEEC 140 EE Sbjct: 122 PVAHKGEEI 130 >gi|309777026|ref|ZP_07671995.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308915236|gb|EFP61007.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 147 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R ++QE+L E + +T Q V ++E G + L+ +S V + I+ Sbjct: 7 LKNLREKNNLTQEQLAERVQVTRQAVSRWETGETQPNTDTLKLLSRVFDVSINTLL 62 >gi|285017009|ref|YP_003374720.1| hypothetical protein XALc_0188 [Xanthomonas albilineans GPE PC73] gi|283472227|emb|CBA14733.1| hypothetical protein XALc_0188 [Xanthomonas albilineans] Length = 270 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 35/111 (31%), Gaps = 12/111 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISF 72 +G R++ R GM+Q + + Q V + EKG N ++ + + + Sbjct: 124 MIGDRLKDLREAAGMNQPEFAAIAKTSKQYVGRLEKGYNKDPNPKFIELWARHFGVRMEW 183 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + ++ D ++ ++ L+ Sbjct: 184 ITAGKLPKDAGSKDVQRPAEVITASRQV-----------DPRLLSRVHALL 223 Score = 39.0 bits (89), Expect = 0.20, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 39/127 (30%), Gaps = 12/127 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ R GM+QE+L G Q + S L I+E L I+ Sbjct: 41 HNLKRLRQARGMTQEELALACGWGGQSRVANYESNSPKAREPKLSELSAIAEALCVSITE 100 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + ++ D L+ R ++ + +I + K+ Sbjct: 101 LLTDHDLGEIGSGVRQPALISGHMIGDRLKDLREAAGMNQPEFA--------AIAKTSKQ 152 Query: 133 YRTIEEE 139 Y E+ Sbjct: 153 YVGRLEK 159 >gi|290892525|ref|ZP_06555518.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|290557834|gb|EFD91355.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] Length = 300 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 7/111 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R+ G++Q+++ + I+ +EKG + + S + I + + P+ FF Sbjct: 5 GELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFFF 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY------FIQIDDVKVRQKII 120 + S +S + ++ + + + +VR+ I+ Sbjct: 64 IYRNFSSTDDDSFWIDFVELSGKNDVEGMQALLDKITLERTEQTEVRKAIL 114 >gi|228989826|ref|ZP_04149806.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] gi|228996017|ref|ZP_04155672.1| Transcriptional regulator [Bacillus mycoides Rock3-17] gi|229003633|ref|ZP_04161448.1| Transcriptional regulator [Bacillus mycoides Rock1-4] gi|228757599|gb|EEM06829.1| Transcriptional regulator [Bacillus mycoides Rock1-4] gi|228763713|gb|EEM12605.1| Transcriptional regulator [Bacillus mycoides Rock3-17] gi|228769973|gb|EEM18556.1| Transcriptional regulator [Bacillus pseudomycoides DSM 12442] Length = 72 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R+ L ++Q++L E +G+T Q + EKG I + ++ F Sbjct: 10 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVNQTLNDLFWE 69 Query: 77 SPT 79 Sbjct: 70 DKE 72 >gi|229021393|ref|ZP_04178016.1| transcriptional regulator, XRE [Bacillus cereus AH1273] gi|229023660|ref|ZP_04180152.1| transcriptional regulator, XRE [Bacillus cereus AH1272] gi|228737585|gb|EEL88089.1| transcriptional regulator, XRE [Bacillus cereus AH1272] gi|228739894|gb|EEL90268.1| transcriptional regulator, XRE [Bacillus cereus AH1273] Length = 120 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 44/118 (37%), Gaps = 11/118 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R ++Q+ L L ++ + YE+ + L I+ + F Sbjct: 5 GNILRELRKEKKITQKDLALTLKLSESTIGMYERNERQPDYDTLNRIANYFKVTTDFLLG 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSEK 131 + + + + + +L+ +F I D + R+++ IV +EK Sbjct: 65 RTTSYQEHVPTNIDVDP---------ELSLWFKDIKDASPEKREELKRFWEFIVQNEK 113 >gi|157370308|ref|YP_001478297.1| DNA-binding transcriptional repressor PuuR [Serratia proteamaculans 568] gi|157322072|gb|ABV41169.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 185 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 5/117 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V + GKR+ R LG+SQ + E G+T + E+ S LQ + V Sbjct: 2 SDVSLAPGKRLSQIRQQLGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLTVYGL 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 +S FF ++ + I + I + + + ++ + Sbjct: 62 SLSAFFAEPEIPDEPQIVIDSQDLIEIGSQGV-----SMKLIHNGDPNRTLAMMIET 113 >gi|15485444|emb|CAC67538.1| hypothetical transcriptional regulator [Streptococcus thermophilus] Length = 111 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++Q +L LGI +E+G + L I+++L + + Sbjct: 5 ERLKELRKQAHLTQVELASKLGIVQSSYADWERGKKKPTQENLVKIAQILNVSVDYLVGN 64 Query: 77 SPTVCSDISSEE 88 S ++ + E Sbjct: 65 SEEKNDELDNIE 76 >gi|89074742|ref|ZP_01161200.1| Hypothetical transcriptional regulator [Photobacterium sp. SKA34] gi|89049506|gb|EAR55067.1| Hypothetical transcriptional regulator [Photobacterium sp. SKA34] Length = 125 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 12/117 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ R G++Q + + L + Q E G L ISE+ E P+++F Sbjct: 8 IAARIKDAREWKGLTQVHMAQQLKVARQTYLDLETGKTEPKVRLLSEISEITERPLTWFV 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK---VRQKIIELVRSIVS 128 + S + + +L ++F ++ + Q+ I L + Sbjct: 68 YGDEGIEILESEYKEEID---------RLLQFFSRLPHSARHVILQQCINLASFMAE 115 >gi|311900507|dbj|BAJ32915.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 192 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 3/81 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P +D V KRIR R+ G S E+L ++ + + E G R+ +L Sbjct: 1 MTED---PGDLDGLVRKRIRALRVAQGWSLEELAARANLSQSSLSRIENGQRRLALDQLV 57 Query: 61 HISEVLESPISFFFDVSPTVC 81 ++ L++ + + + Sbjct: 58 TLANALDTTLDQLVETAAEDV 78 >gi|311693576|gb|ADP96449.1| phage repressor [marine bacterium HP15] Length = 327 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 1/90 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ R + G +QE+LGE +G+T + EK + +++ ++E L + + Sbjct: 1 MALGQRLKQARKLAGYTQEQLGERVGLTQAAIGALEK-RDSQRSNKAAEMAEALGVSLLW 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 S + + + + +D + Sbjct: 60 LVSGSGPMLEEEARKARKELDQSDARYQWE 89 >gi|332652846|ref|ZP_08418591.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] gi|332517992|gb|EGJ47595.1| putative transcriptional regulator [Ruminococcaceae bacterium D16] Length = 149 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 46/122 (37%), Gaps = 12/122 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G + R G+SQE + E LG++ Q + K+E + + ++ + + Sbjct: 1 MSLGSSLYHARKKSGLSQENVAEKLGVSRQTISKWETNETLPDIRQSKGLAMLYHMTLDE 60 Query: 73 FFDVSPTVCS--------DISSEENNVMDFISTPDGLQLNRYFI--QIDD--VKVRQKII 120 + ++ + + + L Y +I+D +R+ + Sbjct: 61 LIEYDFDEQQAQQMIDSVSDEAQARIDWNKVWSKKYPVLATYHKTVRINDYAPALREMLT 120 Query: 121 EL 122 +L Sbjct: 121 QL 122 >gi|283782136|ref|YP_003372891.1| XRE family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283440589|gb|ADB19031.1| transcriptional regulator, XRE family [Pirellula staleyi DSM 6068] Length = 202 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 4/107 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R G + E+L G++ + + E+G I++ + D Sbjct: 21 RVRSMRKAKGWTLEQLASLSGVSRSMLSEIERGSANPTLGVAFRIAQAFGMTLGDLVDSP 80 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 I ++ F+ D I+ +K +E Sbjct: 81 EPPKPRIDVIRSDDRSFMFRDDS----DCRIRTLSPLHLEKDVEFYE 123 >gi|257464093|ref|ZP_05628477.1| MerR family transcriptional regulator [Fusobacterium sp. D12] gi|317061612|ref|ZP_07926097.1| transcriptional regulator [Fusobacterium sp. D12] gi|313687288|gb|EFS24123.1| transcriptional regulator [Fusobacterium sp. D12] Length = 184 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 6/119 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+GK I+ R+ G+ +++ I+ + + EKG + ++ I++ LE P+ Sbjct: 5 INIGKTIKNIRISKGLLLKEVASKCDISSSMLSQIEKGNANPSLNTIKAIAQALEVPLFK 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF S + IST + + ++ KV KI + ++ + + Sbjct: 65 FFINSEETKYTFHIVKKEERKRISTENVI------YELLTPKVESKIAFMQMTLRKNAE 117 >gi|254000130|ref|YP_003052193.1| XRE family transcriptional regulator [Methylovorus sp. SIP3-4] gi|313202093|ref|YP_004040751.1| XRE family transcriptional regulator [Methylovorus sp. MP688] gi|253986809|gb|ACT51666.1| transcriptional regulator, XRE family [Methylovorus sp. SIP3-4] gi|312441409|gb|ADQ85515.1| transcriptional regulator, XRE family [Methylovorus sp. MP688] Length = 215 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G IR R+ G++ + E I+ + K E G+ L+ I+ L +S Sbjct: 26 RHLGNVIRQIRLQHGLTIADISERASISRGMLSKIENGLVSTSLETLEQIANALGVTLSR 85 Query: 73 FFDV 76 F Sbjct: 86 LFRD 89 >gi|251779375|ref|ZP_04822295.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083690|gb|EES49580.1| HTH-type transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 115 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 27/71 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R G++Q L LG + Q+ YE+G L I++ + + Sbjct: 9 ERLVTLRKEKGLTQYDLATQLGFSRGQIGNYEQGSREPDQETLLKIAKFFNVSSDYLLGI 68 Query: 77 SPTVCSDISSE 87 S +E Sbjct: 69 SDKRNYTDDNE 79 >gi|229153736|ref|ZP_04281878.1| transcriptional regulator [Bacillus cereus m1550] gi|228629725|gb|EEK86411.1| transcriptional regulator [Bacillus cereus m1550] Length = 196 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 31/79 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R G SQE L E + ++ Q + +E + L +S + + + Sbjct: 9 MNLSKQIKKYRDREGFSQEDLAEKIYVSRQTISNWENERSYPDIHNLLLLSVLFDVSLDD 68 Query: 73 FFDVSPTVCSDISSEENNV 91 + + + Sbjct: 69 LVKGDMEMMKNNLQQVKFN 87 >gi|227892645|ref|ZP_04010450.1| XRE family transcriptional regulator [Lactobacillus ultunensis DSM 16047] gi|227865516|gb|EEJ72937.1| XRE family transcriptional regulator [Lactobacillus ultunensis DSM 16047] Length = 266 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 56/131 (42%), Gaps = 3/131 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+R+R R LG++Q ++ + I + EK N + L I E + Sbjct: 5 MNMLIGERLRKIRDSLGLTQTQMAAGI-INRSFYSRVEKNKNAISTRDLMKILYHHEVSM 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVRSIVS 128 F I + + ++ D + L + + + + D++++ I+ L+ + Sbjct: 64 VQFCQELGETKPQIVNYQEEIVQAYLKEDIVTLKKIYKKRNFVDIRIKSFILLLISKLEE 123 Query: 129 SEKKYRTIEEE 139 + ++I + Sbjct: 124 KIDEVKSIIHK 134 >gi|169335030|ref|ZP_02862223.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis DSM 17244] gi|169257768|gb|EDS71734.1| hypothetical protein ANASTE_01436 [Anaerofustis stercorihominis DSM 17244] Length = 310 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 36/87 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R I +SQE+L E L ++ Q V K+E G + +L + ++ + + Sbjct: 9 NLQNLRKIHNLSQEQLAEKLDVSRQAVSKWENGTSYPEMDKLLILCDIFSLNMDELVKGN 68 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + E+ + + + Sbjct: 69 ISLDDNSFKEDKALYENAQNKFSKMIT 95 >gi|159904716|ref|YP_001548378.1| XRE family transcriptional regulator [Methanococcus maripaludis C6] gi|159886209|gb|ABX01146.1| transcriptional regulator, XRE family [Methanococcus maripaludis C6] Length = 192 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +VG +I+ R MS E+L + + ++ E G + L I+ L + F Sbjct: 6 HVGIKIKQTRERQNMSIEELAKASNSSVTLIESLENGDLVPSLTPLFKIARALGVRLGTF 65 Query: 74 FDVSPTVCSDISSE 87 D +P ++ Sbjct: 66 LDDAPQNGPVVTKS 79 >gi|116617253|ref|YP_817624.1| XRE-family DNA-binding domain-containing protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096100|gb|ABJ61251.1| XRE-family DNA-binding domain and ATPase component of ABC transporter [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 296 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 30/65 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ + R +SQE + + L ++ Q V K+E+G +L ++++ +++ Sbjct: 8 QLNMLRQKKSLSQEIIAQKLYVSRQSVSKWERGDAEPDIDKLIALADIFGVDLNYLLAGQ 67 Query: 78 PTVCS 82 + Sbjct: 68 QSPEE 72 >gi|90415002|ref|ZP_01222963.1| hypothetical helix-turn-helix XRE-family like protein [Photobacterium profundum 3TCK] gi|90323872|gb|EAS40475.1| hypothetical helix-turn-helix XRE-family like protein [Photobacterium profundum 3TCK] Length = 115 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 35/91 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +RIR+ R ++Q K+ + LG+ Q E G A L I+++L++ F Sbjct: 20 KALAQRIRVARECRELTQVKIAKYLGLARQTYLDIETGKTEPKAGTLLAIAQILKTDYRF 79 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + ++ F + L Sbjct: 80 LLTGEKYNGGIPLTADDVNQYFARNCGDIHL 110 >gi|52142641|ref|YP_084188.1| transcriptional regulator [Bacillus cereus E33L] gi|51976110|gb|AAU17660.1| possible transcriptional regulator/TPR domain protein [Bacillus cereus E33L] Length = 423 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 3/99 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR RM G++Q +L + + + + E G +S +Q +S+ LE + Sbjct: 1 MEIGERIRHVRMQKGLTQGELVSGI-CSITYLSRIESGKITPSSSFIQKVSKKLEVKSDY 59 Query: 73 FFDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQ 109 + + D T L L +++ Sbjct: 60 LINGNYEEIKITIFNICNKYKKDKSITEADLSLLELYVR 98 >gi|54307847|ref|YP_128867.1| transcriptional regulator [Photobacterium profundum SS9] gi|46912273|emb|CAG19065.1| hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 230 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 37/88 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ I G+SQ++LGE LG+ + + G + L+ I+ L + I + Sbjct: 23 ERIKQLAKIQGISQKQLGESLGLQQGTMSRKLSGKYGIEVRELERIAVTLNTSIGYLLTG 82 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN 104 + ++ + ST + + Sbjct: 83 QIDTSTQATTAITHESSQGSTCTYIPII 110 >gi|284044033|ref|YP_003394373.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948254|gb|ADB50998.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 182 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R ++ L E + +T + + E+G+ L + EVL+ P+ Sbjct: 5 QIGERLRAARQRQELTLSALAERVELTKGFLSQVERGLTSPSVGSLLRLCEVLDLPVGEL 64 Query: 74 FDVSPTVCSDISS 86 FD +P + Sbjct: 65 FDANPAPLVRAAE 77 >gi|317053245|ref|YP_004119012.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] gi|316952984|gb|ADU72456.1| transcriptional regulator, XRE family [Pantoea sp. At-9b] Length = 70 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 31/68 (45%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +DI + +R+R R G S + G++ + + E+G + + ++ IS Sbjct: 3 SIDIYISERLRQLRKAQGWSLSETERMTGVSKSMLGQIERGESSPTLATIEKISAGFRLT 62 Query: 70 ISFFFDVS 77 + F ++S Sbjct: 63 LKDFLNLS 70 >gi|258512346|ref|YP_003185780.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479072|gb|ACV59391.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 82 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 35/80 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R+R R + G+S +L E G++ + E G A++L I+E L +S Sbjct: 3 ELAQRLRYYRKLRGLSVRELAERAGVSVSYIYAIESGARGSNAAKLGLIAEALGVSLSDL 62 Query: 74 FDVSPTVCSDISSEENNVMD 93 + + DI + D Sbjct: 63 WGDARPEKGDIPRDPGGEND 82 >gi|238925877|ref|YP_002939395.1| hypothetical protein EUBREC_3535 [Eubacterium rectale ATCC 33656] gi|238877554|gb|ACR77261.1| Hypothetical protein EUBREC_3535 [Eubacterium rectale ATCC 33656] Length = 105 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 41/102 (40%), Gaps = 1/102 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+RI+ R ++QE+L + ++ V E+G+ I+ L+ Sbjct: 4 KAVGQRIKSAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFVAIANALDVSADT 63 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 DV + +++E ++ + + ++ + + + Sbjct: 64 LLIDVVAHSVTGVTNELTEKIEKLPIKEQKKIIKVIHTLLEE 105 >gi|224368187|ref|YP_002602350.1| transcriptional regulator (XRE family protein) [Desulfobacterium autotrophicum HRM2] gi|223690903|gb|ACN14186.1| transcriptional regulator (XRE family protein) [Desulfobacterium autotrophicum HRM2] Length = 182 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 8/118 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK P +++G+ I+ R+ + + L G++ ++K E G R L Sbjct: 1 MAKKKTP---LVHIGETIKKVRLEKSVDLDFLANETGLSIDFLKKVESGEQRPSVGSLLQ 57 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMD-----FISTPDGLQLNRYFIQIDDVK 114 IS L +F + + D ++ + + F + + Sbjct: 58 ISRALGIDSGYFLKDQASNAEKRAEAYTKRTDNYAYTPLTPGAENKHLKAFRILVEAN 115 >gi|218289603|ref|ZP_03493823.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218240253|gb|EED07436.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 436 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 2/97 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R GM+Q +L T + + E A L HI+ L +S F Sbjct: 4 LGQKIRALRKARGMTQSEL-ARGLATASMISQIESDRTMPSAQLLAHIAARLGVDVSEF- 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 S+ + + R+F+ + Sbjct: 62 QRELAGSSEEAHTYRRAKQLAEQGHYEEAIRHFLSLS 98 >gi|210617721|ref|ZP_03291715.1| hypothetical protein CLONEX_03939 [Clostridium nexile DSM 1787] gi|210149163|gb|EEA80172.1| hypothetical protein CLONEX_03939 [Clostridium nexile DSM 1787] Length = 228 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 15/121 (12%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG IR R+ + + L + ++ + KYEKG+ V L+ EV P Sbjct: 3 INERVGNNIRKYRIAHHYTLKDLSALVHKSYSTLSKYEKGILPVSVETLEEFGEVFHIPT 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSS 129 S D+S + L + + + R++I++ ++ + Sbjct: 63 SHLLSAPSEGKPDVSRKS--------------LLKKYYMYNYDGRRKRIMKSIIEEYATD 108 Query: 130 E 130 + Sbjct: 109 Q 109 >gi|167747600|ref|ZP_02419727.1| hypothetical protein ANACAC_02321 [Anaerostipes caccae DSM 14662] gi|167652962|gb|EDR97091.1| hypothetical protein ANACAC_02321 [Anaerostipes caccae DSM 14662] Length = 110 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/95 (11%), Positives = 35/95 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G++IR +R G++ ++L + + +++ E G L + + LE+ ++ Sbjct: 4 KRLGRKIREKRKQCGLTSQQLADLCHVHDGYIRQLESGKKVPSMPLLLSLCDELETSPNY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + + + + + + Sbjct: 64 LLEYAEAGDDKQLLNRLYKLSPEQKNTMICMLDAY 98 >gi|167749015|ref|ZP_02421142.1| hypothetical protein ANACAC_03796 [Anaerostipes caccae DSM 14662] gi|317472587|ref|ZP_07931905.1| hypothetical protein HMPREF1011_02255 [Anaerostipes sp. 3_2_56FAA] gi|167651637|gb|EDR95766.1| hypothetical protein ANACAC_03796 [Anaerostipes caccae DSM 14662] gi|316899921|gb|EFV21917.1| hypothetical protein HMPREF1011_02255 [Anaerostipes sp. 3_2_56FAA] Length = 114 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 12/116 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++I+ R M+QE L E + ++ + E +V L IS L + + Sbjct: 7 ALGRKIKEVRRKQNMTQEYLAEKVDLSVSHISNIETAKTKVSLPTLVEISNALGVSVDYL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S +D + G + ++ ++E+ R + Sbjct: 67 LMDSYHSPEMKEDVFVKELDAVIENCG------------PRDKKIVLEISRKLAEL 110 >gi|126737596|ref|ZP_01753326.1| transcriptional regulator, XRE family with cupin sensor domain [Roseobacter sp. SK209-2-6] gi|126720989|gb|EBA17693.1| transcriptional regulator, XRE family with cupin sensor domain [Roseobacter sp. SK209-2-6] Length = 199 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 33/73 (45%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D +G ++ R++ G++ +L ++ + K E+G S L+ +++ P Sbjct: 13 PLDHLIGAAVKAHRVLAGLTLAELSAKAKVSPAMISKIERGQVSASLSSLEALAQATGVP 72 Query: 70 ISFFFDVSPTVCS 82 + FF + Sbjct: 73 LINFFAGTVERTD 85 >gi|120401475|ref|YP_951304.1| XRE family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119954293|gb|ABM11298.1| transcriptional regulator, XRE family [Mycobacterium vanbaalenii PYR-1] Length = 180 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R GM+ + L G+T + K E+G + + IS LE ++ F P Sbjct: 5 LRAVRQERGMTLDDLAADTGLTKSYLSKVERGQSVPSIAAALKISRALEVDVAQLFSDDP 64 Query: 79 TVCSDISSEENN 90 V + Sbjct: 65 EVSTISVDRAAE 76 >gi|331092590|ref|ZP_08341409.1| hypothetical protein HMPREF9477_02052 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400601|gb|EGG80215.1| hypothetical protein HMPREF9477_02052 [Lachnospiraceae bacterium 2_1_46FAA] Length = 162 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 30/69 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R +SQ ++ E L +T Q+V ++E G + ++ ++E+ ++ Sbjct: 5 EKLCKYRKERKLSQAEIAEKLNVTRQKVSRWEHGTSVPNIETMKQLAEIYGVNVTEMLQQ 64 Query: 77 SPTVCSDIS 85 + Sbjct: 65 EEKKSIEQP 73 >gi|311900230|dbj|BAJ32638.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 200 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G + +L E GI+ + + E G R L ++ + Sbjct: 12 VGPRLRAIRQQHGTTLAQLSEQTGISVSTLSRLESGGRRPTLELLLPLARAHGVALDELV 71 Query: 75 DVSPTVCS 82 D PT Sbjct: 72 DAPPTGDP 79 >gi|297585472|ref|YP_003701252.1| XRE family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297143929|gb|ADI00687.1| transcriptional regulator, XRE family [Bacillus selenitireducens MLS10] Length = 182 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 39/84 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++IR+ R G++ ++L E G++ + + E+G + S L+ I++ L PI+ FF Sbjct: 6 LARQIRVSRTNAGLTLKELSEKTGLSVSFISQVERGTSSPAISSLKKIADGLNVPITSFF 65 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + E +P Sbjct: 66 TPEQNTTYTSVASEQRSFRIDDSP 89 >gi|257081119|ref|ZP_05575480.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|256989149|gb|EEU76451.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] Length = 250 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + +++ + ++ Sbjct: 84 WLLYGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMVRLSEEQL 125 >gi|229057010|ref|ZP_04196404.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH603] gi|228720287|gb|EEL71863.1| HTH-type transcriptional regulator sinR [Bacillus cereus AH603] Length = 107 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ IS VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKISAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T S + SE V D +S+ + R F Sbjct: 61 LLHDETTTESHLDSEWTQLVKDAMSSGVSKEQFREF 96 >gi|224501662|ref|ZP_03669969.1| hypothetical protein LmonFR_03957 [Listeria monocytogenes FSL R2-561] Length = 330 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 38/119 (31%), Gaps = 6/119 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISE 64 + +G +++ R G+S + L + I + + E+G V + +E Sbjct: 21 ILTELGDKLKQARREKGLSLDDLQQITKIQKRYLVAIEEGNYAVMPGKFYARAFIKQYAE 80 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + FD + + +E + + R + +++ Sbjct: 81 AVGLDSATLFDEFESEVPETPQQEVVNNEPTRVQSKRNPMPAQSVGNQANTRNRFFDIL 139 >gi|224499749|ref|ZP_03668098.1| hypothetical protein LmonF1_08684 [Listeria monocytogenes Finland 1988] Length = 330 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 38/119 (31%), Gaps = 6/119 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISE 64 + +G +++ R G+S + L + I + + E+G V + +E Sbjct: 21 ILTELGDKLKQARREKGLSLDDLQQITKIQKRYLVAIEEGNYAVMPGKFYARAFIKQYAE 80 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + FD + + +E + + R + +++ Sbjct: 81 AVGLDSATLFDEFESEVPETPQQEVVNNEPTRVQSKRNPMPAQSVGNQANTRNRFFDIL 139 >gi|229918744|ref|YP_002887390.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229470173|gb|ACQ71945.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 74 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R+ R ++QE+L +G+T + E G G ++ + + F Sbjct: 8 QRLVSLRKAAQLTQEQLALKIGVTQSMIAHIESGTKDPGKDNKLKLAAFFGVTVEYLF 65 >gi|153955107|ref|YP_001395872.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347965|gb|EDK34501.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 372 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 52/134 (38%), Gaps = 11/134 (8%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R G++QE+L + +G++ V K+E G++ L ++ + SP Sbjct: 10 IIQKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNVSVDELLGYSP 69 Query: 79 TVC--------SDISSEENNVMDFISTPDGLQLNRYFIQIDDV--KVRQKIIELVRSIVS 128 + + +S E ++ + + + Q ++ + + Sbjct: 70 QLTKKDIKKIYNKLSHEFATKSFDEVMEQCNKMIKKYYSCFSFLLSMIQLLLNYL-PLAK 128 Query: 129 SEKKYRTIEEECMV 142 +E+ + I +C++ Sbjct: 129 TEEIKKEIIHQCIL 142 >gi|145219415|ref|YP_001130124.1| XRE family transcriptional regulator [Prosthecochloris vibrioformis DSM 265] gi|145205579|gb|ABP36622.1| transcriptional regulator, XRE family [Chlorobium phaeovibrioides DSM 265] Length = 379 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G R+R RM LG SQEKL EC G+ + E+G + + + I+ L Sbjct: 7 DSITRLLGLRVRRWRMALGYSQEKLAECAGLHRTYIGTVERGEQNITVANAEKIANALHI 66 Query: 69 PISFFF 74 ++ Sbjct: 67 TLADIL 72 >gi|320321186|gb|EFW77327.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 121 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 4/98 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +I+ R + GMSQ L E +G V YE+G++ G +L IS + Sbjct: 14 FVGAKIKALRKLSGMSQAVLAEKIGCDAPLVGCYERGIHLPGVEQLIKISMAFDVAPGEL 73 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 D+ T + + + +P+ L+ F Sbjct: 74 LPGGQDILRTRLISLRQAIADKAIEVDSPESLEEILAF 111 >gi|229546719|ref|ZP_04435444.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX1322] gi|256854280|ref|ZP_05559644.1| transcriptional regulator [Enterococcus faecalis T8] gi|307275291|ref|ZP_07556434.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307290889|ref|ZP_07570779.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|229308068|gb|EEN74055.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX1322] gi|256709840|gb|EEU24884.1| transcriptional regulator [Enterococcus faecalis T8] gi|306497959|gb|EFM67486.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306507925|gb|EFM77052.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|315029743|gb|EFT41675.1| helix-turn-helix protein [Enterococcus faecalis TX4000] Length = 232 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + +++ + ++ Sbjct: 66 WLLYGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMVRLSEEQL 107 >gi|225375548|ref|ZP_03752769.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans DSM 16841] gi|225212527|gb|EEG94881.1| hypothetical protein ROSEINA2194_01173 [Roseburia inulinivorans DSM 16841] Length = 145 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 33/84 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + + R + MSQ++L + +G++ Q + KYE G + R + +++V + + Sbjct: 10 ENLIQLRKLNHMSQDELADQIGVSRQTLSKYETGESLPDIERCKRLADVFGVTVDDLINY 69 Query: 77 SPTVCSDISSEENNVMDFISTPDG 100 + F G Sbjct: 70 EKKDSLGLEVPPKGKHIFGMVKVG 93 >gi|217965582|ref|YP_002351260.1| transcriptional activator, Rgg/GadR/MutR family, C- domain protein [Listeria monocytogenes HCC23] gi|217334852|gb|ACK40646.1| transcriptional activator, Rgg/GadR/MutR family, C- domain protein [Listeria monocytogenes HCC23] gi|307569867|emb|CAR83046.1| transcriptional activator, Rgg family [Listeria monocytogenes L99] Length = 300 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 11/113 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R+ G++Q+++ + I+ +EKG + + S + I + + P+ FF Sbjct: 5 GELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFF- 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY--------FIQIDDVKVRQKII 120 + +++ +DF+ + + + +VR+ I+ Sbjct: 63 -FIYRDFSSTEDDSFWIDFVELSGKNDVVGMQALLDKITLERTEQSEVRKAIL 114 >gi|170755017|ref|YP_001780261.1| cupin domain-containing protein [Clostridium botulinum B1 str. Okra] gi|169120229|gb|ACA44065.1| cupin domain protein [Clostridium botulinum B1 str. Okra] Length = 183 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 28/71 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R +S +L E I+ + + EKG + L I+ L+ P Sbjct: 3 INSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPY 62 Query: 71 SFFFDVSPTVC 81 + + Sbjct: 63 TLLLEQKEHDT 73 >gi|220926083|ref|YP_002501385.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219950690|gb|ACL61082.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 109 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 29/76 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R G+SQEK G+ ++Q +E R+G + + + + Sbjct: 21 RAISARLRALRKTTGLSQEKFAARCGLGYKQWGNFEAEEGRIGIDAAIALVKEFGVTLDW 80 Query: 73 FFDVSPTVCSDISSEE 88 + P E+ Sbjct: 81 IYLGHPYRMPAELLEQ 96 >gi|170719389|ref|YP_001747077.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169757392|gb|ACA70708.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 182 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVE 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF ++ + I + + ++D ++L Sbjct: 61 FFSVELEAESHAQIVYKAHELIDISDGAVTMKLV 94 >gi|256964305|ref|ZP_05568476.1| cro/CI family transcriptional regulator [Enterococcus faecalis HIP11704] gi|307271874|ref|ZP_07553142.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|256954801|gb|EEU71433.1| cro/CI family transcriptional regulator [Enterococcus faecalis HIP11704] gi|306511380|gb|EFM80382.1| helix-turn-helix protein [Enterococcus faecalis TX0855] Length = 156 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + ++ + ++ Sbjct: 66 WLLHGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMGRLSEEQL 107 >gi|239945646|ref|ZP_04697583.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239992116|ref|ZP_04712780.1| putative transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291449104|ref|ZP_06588494.1| regulatory protein [Streptomyces roseosporus NRRL 15998] gi|291352051|gb|EFE78955.1| regulatory protein [Streptomyces roseosporus NRRL 15998] Length = 202 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 27/72 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V R+R R G++ E + G++ + + E G + L ++ + + +S Sbjct: 15 VAPRLRDLRRARGLTLETAAQRAGLSPAHLSRLETGRRQPSLPMLLGLARIYGTTVSELL 74 Query: 75 DVSPTVCSDISS 86 P I Sbjct: 75 GEQPPERDAIIR 86 >gi|226308346|ref|YP_002768306.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226187463|dbj|BAH35567.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 62 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 25/59 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ R G+SQ+ + LGIT Q V EKG S I+E + + F Sbjct: 3 NNLQELRTAAGLSQQACADALGITRQTVISIEKGHFDPRLSLAFRIAEYFDKRVDDVFS 61 >gi|187777166|ref|ZP_02993639.1| hypothetical protein CLOSPO_00711 [Clostridium sporogenes ATCC 15579] gi|187774094|gb|EDU37896.1| hypothetical protein CLOSPO_00711 [Clostridium sporogenes ATCC 15579] Length = 393 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 7/87 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRL 59 M+ NK N G+R++ R+ G++ +L E L + Q V YE N + Sbjct: 1 MMRNKTAFN------GERLKAARIYRGLTVAELAEKLELQRQTVSMYENNKLNNPELVTI 54 Query: 60 QHISEVLESPISFFFDVSPTVCSDISS 86 +S VL P FF + + S+ Sbjct: 55 AKMSTVLGFPKKFFLENDKIGIKNGST 81 >gi|118476856|ref|YP_894007.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118416081|gb|ABK84500.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] Length = 114 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 8 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 67 Query: 73 FFDVSPTVCSDISSE 87 T +++ SE Sbjct: 68 LLHDETTKEANLDSE 82 >gi|322804952|emb|CBZ02511.1| transcriptional regulator [Clostridium botulinum H04402 065] Length = 183 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 28/71 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R +S +L E I+ + + EKG + L I+ L+ P Sbjct: 3 INSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPY 62 Query: 71 SFFFDVSPTVC 81 + + Sbjct: 63 TLLLEQKEHDT 73 >gi|302532682|ref|ZP_07285024.1| transcriptional regulator [Streptomyces sp. C] gi|302441577|gb|EFL13393.1| transcriptional regulator [Streptomyces sp. C] Length = 191 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 6/117 (5%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P I VG+ IR R +S L G++ + + E+G+ S + I+E L+ Sbjct: 6 PTPEAIEVGRAIRECRTARRVSMAVLAARSGLSQPFLSQLERGLATPSLSSIYRIAEALD 65 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 F P + S E++ + Q+ R I R ++E Sbjct: 66 VAPGTFL--RPPGRPGVVSHESDPQVIRVSEAAGQVARVLI----PGGRSALMEAYE 116 >gi|259417313|ref|ZP_05741232.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259346219|gb|EEW58033.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 204 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 2/105 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K P + VG IR RR L ++ + L + G++ + + E+ L Sbjct: 1 MPREKPPQEPN--VGPAIRKRRKQLKLTLQALCDKSGVSVGYLSQVERDNATPSLGTLAQ 58 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 IS L+ + +F S + + + + Sbjct: 59 ISAALDVGLDYFISASKPSDGLTRAGTRPLFALDDSSLRYEALGA 103 >gi|229172431|ref|ZP_04299990.1| Transcriptional regulator, Xre [Bacillus cereus MM3] gi|228610902|gb|EEK68165.1| Transcriptional regulator, Xre [Bacillus cereus MM3] Length = 404 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I++ L ISF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIADKLGCEISFLL 62 Query: 75 DVSP 78 + Sbjct: 63 EEDD 66 >gi|225018073|ref|ZP_03707265.1| hypothetical protein CLOSTMETH_02010 [Clostridium methylpentosum DSM 5476] gi|224949070|gb|EEG30279.1| hypothetical protein CLOSTMETH_02010 [Clostridium methylpentosum DSM 5476] Length = 265 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/107 (11%), Positives = 31/107 (28%), Gaps = 8/107 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK+ +G++I + Q+ L + L + + + G +L Sbjct: 1 MYNTKKM-------IGEKINQALTLCNKKQKDLAKELQVADNTISYFVNGSRTPNTEQLI 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 I+ + V ++ + ++ + Sbjct: 54 KIARFCNVSADWLL-GLSEVQKPNTTVAAICDSTGLSETAVENLHAY 99 >gi|212633871|ref|YP_002310396.1| transcriptional regulator [Shewanella piezotolerans WP3] gi|212555355|gb|ACJ27809.1| Transcriptional regulator, putative [Shewanella piezotolerans WP3] Length = 108 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 10/86 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGA 56 M + P P+ R++ R LG+SQ++LG LG+ + YEKG + Sbjct: 1 MSEKQINPLPL------RLKQARTALGISQKQLGIQLGMEPGTASARMNHYEKGKHTPDY 54 Query: 57 SRLQHISEVLESPISFFFDVSPTVCS 82 + L+ +++ L P+++FF S Sbjct: 55 ATLKAMADELGVPVAYFFCESEKNAQ 80 >gi|182417831|ref|ZP_02949145.1| HTH-type transcriptional regulator xre [Clostridium butyricum 5521] gi|237668782|ref|ZP_04528766.1| transcriptional regulator, XRE family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378294|gb|EDT75826.1| HTH-type transcriptional regulator xre [Clostridium butyricum 5521] gi|237657130|gb|EEP54686.1| transcriptional regulator, XRE family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 111 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 46/117 (39%), Gaps = 10/117 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R+ ++QE+L G+ ++ +YE + + ++ + + Sbjct: 5 GERLRQLRIEKNLTQEELANYFGLHKTRISQYELNKRQADDEMKKKLALYFNVSLDWLLG 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + ++ N D + L N + ++ D +++I + + KK Sbjct: 65 L---------TDIRNYTDDPNITIALHSNTDYDELPDEA-KKEIDNFIEFVKQKYKK 111 >gi|206975640|ref|ZP_03236552.1| transcriptional regulator, XRE family [Bacillus cereus H3081.97] gi|206746102|gb|EDZ57497.1| transcriptional regulator, XRE family [Bacillus cereus H3081.97] Length = 110 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 2/99 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RIR R+ L ++QE L E + I+ + + E+G + L ++ L + + Sbjct: 4 KKLGNRIREERLKLNLTQEILAEDINISVSYMGQIERGERNLSLDTLVKLAYRLSVTVDY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 +V ++ + I + I Sbjct: 64 LL--LDSVQANNENSIKQFASLIDGRSQKETYMALDMIK 100 >gi|148378625|ref|YP_001253166.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153934328|ref|YP_001383012.1| DNA-binding cupin domain-containing protein [Clostridium botulinum A str. ATCC 19397] gi|153935310|ref|YP_001386559.1| helix-turn-helix domain-containing protein [Clostridium botulinum A str. Hall] gi|168177994|ref|ZP_02612658.1| cupin domain protein [Clostridium botulinum NCTC 2916] gi|226947877|ref|YP_002802968.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto] gi|148288109|emb|CAL82177.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152930372|gb|ABS35872.1| DNA-binding/cupin domain protein [Clostridium botulinum A str. ATCC 19397] gi|152931224|gb|ABS36723.1| helix-turn-helix domain protein [Clostridium botulinum A str. Hall] gi|182671201|gb|EDT83175.1| cupin domain protein [Clostridium botulinum NCTC 2916] gi|226840881|gb|ACO83547.1| cupin domain protein [Clostridium botulinum A2 str. Kyoto] Length = 183 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R +S +L E I+ + + EKG + L I+ L+ P Sbjct: 3 INSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPY 62 Query: 71 SFFFDVSP 78 + + Sbjct: 63 TLLLEQKE 70 >gi|153814674|ref|ZP_01967342.1| hypothetical protein RUMTOR_00889 [Ruminococcus torques ATCC 27756] gi|317501120|ref|ZP_07959326.1| hypothetical protein HMPREF1026_01269 [Lachnospiraceae bacterium 8_1_57FAA] gi|331090138|ref|ZP_08339026.1| hypothetical protein HMPREF1025_02609 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848168|gb|EDK25086.1| hypothetical protein RUMTOR_00889 [Ruminococcus torques ATCC 27756] gi|316897507|gb|EFV19572.1| hypothetical protein HMPREF1026_01269 [Lachnospiraceae bacterium 8_1_57FAA] gi|330402084|gb|EGG81656.1| hypothetical protein HMPREF1025_02609 [Lachnospiraceae bacterium 3_1_46FAA] Length = 124 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 8/114 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I + ++ R +Q + + L I+ Q YE G + I+ + + Sbjct: 3 NIQLAANLQRLRKDHHFTQTQFSKKLNISRQAYSNYETGKRIPDLDIIIRIANIYHISLE 62 Query: 72 FFFDV--SPTVCSDISSEENNVMDFISTPDGLQLNRY------FIQIDDVKVRQ 117 S + +S + + D + L R + D R+ Sbjct: 63 NLLTQTCSKDGLINETSGPYFTGMVVDSADTIYLTREEIDLITHYRNADADERK 116 >gi|126179762|ref|YP_001047727.1| XRE family transcriptional regulator [Methanoculleus marisnigri JR1] gi|125862556|gb|ABN57745.1| transcriptional regulator, XRE family [Methanoculleus marisnigri JR1] Length = 69 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI++ R + ++QE L LG+T Q + EKG I+ I F Sbjct: 3 NRIKVYRAMHDLTQEGLANELGVTRQTILAIEKGKYDPSLELAFKIAGFFGVTIEDIF 60 >gi|9632458|ref|NP_049430.1| hypothetical protein DT1p41 [Streptococcus phage DT1] gi|4530178|gb|AAD21918.1| unknown [Streptococcus phage DT1] Length = 165 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 28/61 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R + +++ +L E +G+T + +E G + + S + ++E I + Sbjct: 2 NRLKELRELRKITRVELAEKIGVTKLTILNWEHGTHEIKGSNAKKLAEYFNVSIPYLLGY 61 Query: 77 S 77 Sbjct: 62 D 62 >gi|152975886|ref|YP_001375403.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152024638|gb|ABS22408.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 64 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 20/58 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R + +SQ++L ++ Q + E I+ L + F Sbjct: 3 NNIKSLRKVQKISQDELANLCNVSRQTINAIENNKYDPSLVLAFSIANYLNVKVDELF 60 >gi|150388588|ref|YP_001318637.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149948450|gb|ABR46978.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 122 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R++L ++ E+L E L ++ + E+G V L +S L + Sbjct: 8 IGNKIRKERILLDLTLEELAEILDLSPSYMGLIERGQRGVSIETLYKLSTTLNVTTDYLL 67 Query: 75 DVSPTVCSDI 84 + D Sbjct: 68 SPADEKACDT 77 >gi|324327242|gb|ADY22502.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 374 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + ++ + + + ++ I+ + Sbjct: 64 LISYTPQMEQEDIKDLYHRLAEAFSEKPFDEVMMECRKIIKKYYSCFPLLIQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K + EE M Sbjct: 124 HMLTEDTDKRIEMLEEAM 141 >gi|320326795|gb|EFW82833.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330882738|gb|EGH16887.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 118 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 10/118 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R G +Q++L + +G + +YE+GV L + L+ + Sbjct: 7 FIGVRVRAFRKAHGFNQDQLAKLVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAEL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 +D S + + + + + ID + +I L I++S+ Sbjct: 67 L------PADGISSSREHLPKLRD----EAVKKILTIDSTDGLKDVIRLADWILNSQD 114 >gi|303242127|ref|ZP_07328617.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590314|gb|EFL60072.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 196 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 14/125 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R ++Q +L E LG+ Q + YE G L +++ F Sbjct: 13 QRIKQLREENKINQHQLAEILGVKNQTISNYEAGEREPSYGVLLKLADYFNVSTDFLLGR 72 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + SD+ + +++ + D L ++ E + I +K+Y Sbjct: 73 TNISHSDLGQKTEYLLEHDAYSDTL--------------QEIFNEYYKFIDLVDKEYEKT 118 Query: 137 EEECM 141 +E C+ Sbjct: 119 QENCL 123 >gi|237794998|ref|YP_002862550.1| immunity repressor protein [Clostridium botulinum Ba4 str. 657] gi|229264088|gb|ACQ55121.1| immunity repressor protein [Clostridium botulinum Ba4 str. 657] Length = 141 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 28/93 (30%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I+ R ++Q +L L I + E G L +++ + F Sbjct: 1 MLGDKIKQLRENKKLTQHELANKLNIAQSTIGMIEGNKRPAGRKTLIKLADFFGVSVDFL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 +I I LN+ Sbjct: 61 LSEDTASEEEIIKLTQKDEKDIKKALNETLNQL 93 >gi|170756399|ref|YP_001781169.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169121611|gb|ACA45447.1| putative DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 370 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R ++QE+L +G++ V K+E G + + L I+ I Sbjct: 6 IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIAAFFNVTIDTLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + + + + N + + + Sbjct: 66 NFKIELSDEEVMDIFNECEKLFSN 89 >gi|160902864|ref|YP_001568445.1| XRE family transcriptional regulator [Petrotoga mobilis SJ95] gi|160360508|gb|ABX32122.1| transcriptional regulator, XRE family [Petrotoga mobilis SJ95] Length = 178 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 37/80 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R++ M+QE+L +T + + E+ + L+ I L + + Sbjct: 1 MQIGEKIKSLRIMRNMTQEELATRSDLTRGFISQVERDLASPTVENLEMILRALGTDLKD 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 FF + ++E+ + Sbjct: 61 FFSNLENKEKIVFTKEDRIP 80 >gi|126651763|ref|ZP_01723965.1| transcriptional regulator [Bacillus sp. B14905] gi|126591441|gb|EAZ85548.1| transcriptional regulator [Bacillus sp. B14905] Length = 179 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 24/70 (34%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + VG +R R MS E+L ++ + K E+G + L I L P Sbjct: 2 DLSSQVGMNLREIRKNKRMSLEELASISNVSKLTLGKIERGETNPTVNILWKICRGLHIP 61 Query: 70 ISFFFDVSPT 79 + Sbjct: 62 LVSLLSFEEN 71 >gi|2231995|gb|AAC45921.1| aldehyde dehydrogenase [Azotobacter vinelandii] Length = 185 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 35/101 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R++ R + G+SQ +L + G+T + EK S L+ + + + FF Sbjct: 6 VGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLMEFF 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + + + L + D + Sbjct: 66 SLDLEAEASAPVVYRAAEQAELSRGLLSMRLIGKDHPDRAL 106 >gi|315038706|ref|YP_004032274.1| helix-turn-helix domain protein [Lactobacillus amylovorus GRL 1112] gi|312276839|gb|ADQ59479.1| helix-turn-helix domain protein [Lactobacillus amylovorus GRL 1112] Length = 135 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R G+SQ KL + GI + ++E G++ G RL+ I++ L +++ Sbjct: 2 NRIREIRKKQGISQSKLAQLTGIPTSTLSEFENGLHDPGEDRLRKIAQALNVSLNYIQGG 61 >gi|306825347|ref|ZP_07458687.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432285|gb|EFM35261.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 158 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 34/95 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R ++Q + + +GI+ + +YE G++ V + I + Sbjct: 1 MIGENIKALRKTHNLTQPEFAKIVGISRNSLSRYENGISSVSTELIDRICKKFNVSYIDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + ++ I L + + Sbjct: 61 VGEEKMLTPVEDYQLTLKIEVIKERGANILAQLYR 95 >gi|262197418|ref|YP_003268627.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262080765|gb|ACY16734.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 140 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 42/115 (36%), Gaps = 3/115 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ +R R G++QE+ E +G++ + + E+G L I+ E Sbjct: 10 GRTMRRARTAQGLTQERAAERIGVSVEFYARIERGNAHPSVPTLYRIASAFEVSADALIG 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + S + D P ++ ++ R+ + L++ E Sbjct: 70 LDQAAAAAPVSLADLHPD---DPPPVRRAMSRLREAPPTTRRLVEMLLKECERRE 121 >gi|229094268|ref|ZP_04225344.1| hypothetical protein bcere0021_49750 [Bacillus cereus Rock3-42] gi|228689121|gb|EEL42944.1| hypothetical protein bcere0021_49750 [Bacillus cereus Rock3-42] Length = 65 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 5 NKIKELRKQHHITQVEMAKAMKVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|330880055|gb|EGH14204.1| RtrR protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 76 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G+RIR +R +SQ+ L I V + E+G + +L I+ VL Sbjct: 2 DKLAKALGRRIRTQRKACQISQDALALACNIDRSYVGRIERGEVNITVEKLYRIAGVLAC 61 Query: 69 PISFFF 74 S Sbjct: 62 DPSGLL 67 >gi|319939789|ref|ZP_08014145.1| hypothetical protein HMPREF9459_01133 [Streptococcus anginosus 1_2_62CV] gi|319811002|gb|EFW07317.1| hypothetical protein HMPREF9459_01133 [Streptococcus anginosus 1_2_62CV] Length = 133 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 45/89 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R GM+Q +L E +G+T + V K+E+ ++ + + ++++ ++ + Sbjct: 6 LGMMISSLRKAKGMTQLELAEKMGVTDKAVSKWERDLSYPDINTIPKLADLFDTSVDELM 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 + + + +++++D + G+ + Sbjct: 66 QGQTVMKENKKNRKSDIVDTVLRGLGVAM 94 >gi|319650690|ref|ZP_08004829.1| hypothetical protein HMPREF1013_01434 [Bacillus sp. 2_A_57_CT2] gi|317397547|gb|EFV78246.1| hypothetical protein HMPREF1013_01434 [Bacillus sp. 2_A_57_CT2] Length = 297 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R I ++Q++L E + T Q+ K E G AS L IS+ L +++FF Sbjct: 6 IGDKIKELRRIQRITQKELAEDI-CTQAQISKLENGEVIPCASTLFLISQKLGIDVNYFF 64 Query: 75 DVSPTVCSDISSE 87 ++ T D E Sbjct: 65 NIGLTPRLDYVEE 77 >gi|291550212|emb|CBL26474.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 116 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 43/115 (37%), Gaps = 3/115 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +I GMSQ++ + GI + ++K + ++ I EVL+ Sbjct: 4 ISDKIFELLKEKGMSQKEFAQRTGIAESSISDWKKKRTNPVSDKILIICEVLDVTPYELL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + S NN + L + ++ D ++++I + ++ Sbjct: 64 SGAEHTGN--RSRYNNTYVISKETEIGMLVETYQKL-DTNAQKRLIGYLEALKEL 115 >gi|291521205|emb|CBK79498.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 111 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 36/72 (50%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K N + +GKRI+ RR+ LGM Q +L E + I+ + E+G+ R G I +V Sbjct: 2 KNENERFVEMGKRIKARRVSLGMKQMELAERIDISNNHISSIERGIERPGLESFIRICDV 61 Query: 66 LESPISFFFDVS 77 L+ + S Sbjct: 62 LDVTPDYLLLGS 73 >gi|228993099|ref|ZP_04153022.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM 12442] gi|228999148|ref|ZP_04158730.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17] gi|229006696|ref|ZP_04164330.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4] gi|228754557|gb|EEM03968.1| Transcriptional regulator, MerR [Bacillus mycoides Rock1-4] gi|228760765|gb|EEM09729.1| Transcriptional regulator, MerR [Bacillus mycoides Rock3-17] gi|228766747|gb|EEM15387.1| Transcriptional regulator, MerR [Bacillus pseudomycoides DSM 12442] Length = 181 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 35/92 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS+ L P+ + Sbjct: 1 MNIGSAIREIRQRRGVTIAQICEGTGLSKGFMSQVENNKTSPSISTLETISKFLNVPLPY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + EE + ++ Sbjct: 61 LLLEQKDHMKIVKKEERKYSVYGKDEQRIEHV 92 >gi|297204896|ref|ZP_06922293.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197711669|gb|EDY55703.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 135 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 25/140 (17%), Positives = 57/140 (40%), Gaps = 17/140 (12%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + + +P +G+R++ R L MSQ+ + + GI + E+G RV + L+ + Sbjct: 6 SDARARDPELTQLGERLKRTRDYLNMSQQFVSDNTGIPRSAISDIERGERRVDSLELKKL 65 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + P+++F + + L R Q+ D ++ ++E Sbjct: 66 ARLYRQPVAYFLAEEENADAGEYALAG-------------LPRALAQLTDGD-QKTVMEF 111 Query: 123 VRSIV---SSEKKYRTIEEE 139 + ++EK+ E + Sbjct: 112 AEYLSLRRAAEKEQEGSENQ 131 >gi|111021088|ref|YP_704060.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110820618|gb|ABG95902.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 207 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R++ R G + +L E GI+ + + E G + + ++ + P+ Sbjct: 17 AVGPRLKALRQQRGATLAQLSESTGISVSTLSRLESGQRKPTLELMLLLARAHQLPLDEL 76 Query: 74 FD 75 D Sbjct: 77 VD 78 >gi|134100678|ref|YP_001106339.1| HTH DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|291006518|ref|ZP_06564491.1| HTH DNA-binding domain-containing protein [Saccharopolyspora erythraea NRRL 2338] gi|37595051|gb|AAQ94242.1| helix-turn-helix regulator [Saccharopolyspora erythraea] gi|133913301|emb|CAM03414.1| HTH transcriptional regulator, XRE family, cupin domain [Saccharopolyspora erythraea NRRL 2338] Length = 196 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 11/134 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R + G+S ++ I + + E G L +++VLE P+ Sbjct: 7 VGANLRAVRSVRGLSLSEVARRAAIGKGTLSELEAGQRNPTLETLYALAQVLEVPLGELL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + D +S + + RQ+I L + +Y Sbjct: 67 VETEAADGDRQVLVRAGGADLSGRTID--VQLMDRTAIGGFRQEIYRLY---ARAGSRYV 121 Query: 135 TI------EEECMV 142 + E+ +V Sbjct: 122 SPGHRPRVVEQLLV 135 >gi|78187738|ref|YP_375781.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78167640|gb|ABB24738.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 120 Score = 45.6 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +GK IR R+ G SQE L E G+ + E+G + I++ L Sbjct: 6 DIIRMLGKNIRHERVRQGFSQEDLAEKAGLHRTYIGMVERGERNITLLNYAKIADALNLA 65 Query: 70 ISFFFDV 76 + Sbjct: 66 MHDLMKD 72 >gi|327183084|gb|AEA31531.1| DNA-binding membrane protein [Lactobacillus amylovorus GRL 1118] Length = 162 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R +SQ + + L +T Q V ++ N + L I+ V + Sbjct: 6 QIKQLRKENNLSQVQYAKKLHVTRQAVSNWKNNRNLLDLEMLIEINRVFHISLDQLILGD 65 Query: 78 PTV 80 + Sbjct: 66 DNM 68 >gi|310828836|ref|YP_003961193.1| hypothetical protein ELI_3266 [Eubacterium limosum KIST612] gi|308740570|gb|ADO38230.1| hypothetical protein ELI_3266 [Eubacterium limosum KIST612] Length = 66 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 25/60 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R L M+Q+ L E +G+T Q + EKG I VL + F Sbjct: 6 RIKAARAALDMTQKDLAEAVGVTRQTMNAIEKGDYNPTIKLCVAICRVLGKTLDELFWEE 65 >gi|296454298|ref|YP_003661441.1| Cro/CI family transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296183729|gb|ADH00611.1| Transcriptional regulator, Cro/CI family [Bifidobacterium longum subsp. longum JDM301] Length = 65 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RI+ R+ LG+SQ L ++ Q V E S ++ L + + F Sbjct: 6 NRIKELRVNLGLSQGTLARRCDVSRQTVNAIENNKYDPTLSLAFRLARELGATVDGLFT 64 >gi|295095877|emb|CBK84967.1| Predicted transcriptional regulators [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 175 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 35/94 (37%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + ++ ++ R G S KL E G++ + + E+ + S L I+ L P Sbjct: 2 DITQHLATTLKALRQARGWSLSKLAEETGVSKAMLGQIERNESSPTVSTLWKIATGLNVP 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 S F + ++ ++ P QL Sbjct: 62 FSAFITPESEPQAVFDPQQQAMVVKPLFPWDEQL 95 >gi|291558273|emb|CBL35390.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 110 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 34/85 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R +Q+++ + LG + Q KYE G + R +++ + + + Sbjct: 5 QRLRDLREDADKTQQEIADYLGTSAQHYGKYESGKAEIPLERAVRLAKYYNVSLDYIAGI 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 S + S + + +S Sbjct: 65 SSSRHPLTSDNSLSPIGILSDKITR 89 >gi|269961337|ref|ZP_06175702.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833888|gb|EEZ87982.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 518 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 7/73 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G L+ I+EV Sbjct: 13 FLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAEVF 72 Query: 67 ESPISFFFDVSPT 79 + ++F D P Sbjct: 73 QKEPAWFLDDEPE 85 >gi|269928755|ref|YP_003321076.1| hypothetical protein Sthe_2842 [Sphaerobacter thermophilus DSM 20745] gi|269788112|gb|ACZ40254.1| protein of unknown function DUF955 [Sphaerobacter thermophilus DSM 20745] Length = 372 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 36/79 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ L R G+S L E +G++ + + YE+G + G L I++ L PI+FFF Sbjct: 14 RLTLARKRRGLSISALAERVGLSRRSIFNYERGRSVPGDHTLATIAQTLGFPITFFFGND 73 Query: 78 PTVCSDISSEENNVMDFIS 96 S + + + Sbjct: 74 IEELSPDAVSFRAMSKMTA 92 >gi|257061988|ref|YP_003139876.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8802] gi|256592154|gb|ACV03041.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8802] Length = 333 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I +G + R G+SQE L E + + E+G + + I + L+ I Sbjct: 5 ILIELGNFLHKIRTRKGLSQEYLAELADLDRTYISLLERGKRNPSLTCINSIFQALDIDI 64 Query: 71 SFFFDVSP 78 F + Sbjct: 65 IEIFQLFD 72 >gi|90411721|ref|ZP_01219730.1| Hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90327283|gb|EAS43647.1| Hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 103 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 25/61 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R ++QE + + ++ + E G + S L IS+ L IS+ Sbjct: 12 RIKECRERNNLTQEYIARKIKVSRKTYIDIEAGKTALKVSTLFDISDCLGCKISYLLGTD 71 Query: 78 P 78 Sbjct: 72 E 72 >gi|152966546|ref|YP_001362330.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151361063|gb|ABS04066.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 210 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 37/111 (33%), Gaps = 7/111 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 PV VG R+R R G + L GI+ + + E G R L ++ P Sbjct: 18 PVLAGVGSRLRALRRNRGATLNDLSTNTGISISTLSRLESGRRRPTLELLLLLARAHHVP 77 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + +PT +T G+ + + + + II Sbjct: 78 LDELV-GAPTTGDPRIHPRP------TTRHGMTMLPLSRRPGGPQAYKLII 121 >gi|332637654|ref|ZP_08416517.1| hypothetical protein WcibK1_03097 [Weissella cibaria KACC 11862] Length = 70 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R + G++Q++L +G+T Q + EKG I+ L++ ++ F Sbjct: 5 VRKYRTLKGLTQKELANAIGVTRQTIALIEKGTYNPTMKLAIAIATQLDTDLNSLFLRQD 64 Query: 79 TVCSD 83 T ++ Sbjct: 65 TDETN 69 >gi|325954495|ref|YP_004238155.1| helix-turn-helix domain protein [Weeksella virosa DSM 16922] gi|323437113|gb|ADX67577.1| helix-turn-helix domain protein [Weeksella virosa DSM 16922] Length = 113 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 30/65 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+R R +SQ+ L + +G + +YE+ + ++ +++ L + + + Sbjct: 5 GKRLREAREAKNLSQQDLAKLIGSVHTVIGRYERDEMKPSIDVVKRLADELGTTVGYLIG 64 Query: 76 VSPTV 80 + Sbjct: 65 EAKEA 69 >gi|302186628|ref|ZP_07263301.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae 642] Length = 189 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 1/109 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M PV +V + +R R +SQ L E G++ + + E G V + L Sbjct: 1 MDKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLD 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++E L+ S +P E I+ + L R + Sbjct: 61 RVAEALQVAFSDLIQ-APENRDYSRINELAWAGTIAGSKAVLLARAVAR 108 >gi|289178728|gb|ADC85974.1| Transcriptional regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 348 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 30/85 (35%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R M+QE+L +G++ Q V K+E +L + ++ + Sbjct: 19 NLQYLRGSHNMTQEQLAMLIGVSRQSVSKWESEKAYPEMDKLLMLCDMFGVSLDDLVMGD 78 Query: 78 PTVCSDISSEENNVMDFISTPDGLQ 102 +S+ + ++ Sbjct: 79 VRNGIAMSANHVEDGLPKAPMPEME 103 >gi|262404323|ref|ZP_06080878.1| transcriptional regulator YidN, Cro/CI family [Vibrio sp. RC586] gi|262349355|gb|EEY98493.1| transcriptional regulator YidN, Cro/CI family [Vibrio sp. RC586] Length = 181 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 38/84 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 9 QIANQLKVLRKSKGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 F P + S S ++ + T Sbjct: 69 FANDPQLLSSERSFPDDPNMKVHT 92 >gi|302540835|ref|ZP_07293177.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces hygroscopicus ATCC 53653] gi|302458453|gb|EFL21546.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces himastatinicus ATCC 53653] Length = 195 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 5/113 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D + +R R G+S ++ G+ + + E G L + L+ P Sbjct: 17 PMDS-IAAVLRRERGRAGLSLTEVARRAGVAKSTLSQLESGNGNPSLETLWALCVTLDVP 75 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 S D I ++E + + R+ I L Sbjct: 76 PSRLLDPPRPRVQVIRADEGVTLA----SAQADYQAAMLSASPPGARRDIYRL 124 >gi|226948868|ref|YP_002803959.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226843124|gb|ACO85790.1| putative DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 370 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 34/87 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R G++QE+L +G++ V K+E + + L I+ I Sbjct: 6 IGEVIYRLRKEKGITQEQLANFIGVSTAAVSKWESETSYPDITLLPVIAIFFNVTIDTLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 + + + + + + + L Sbjct: 66 NFKIELSDEEVMALFSECEKLFSSGEL 92 >gi|218281525|ref|ZP_03487954.1| hypothetical protein EUBIFOR_00519 [Eubacterium biforme DSM 3989] gi|218217314|gb|EEC90852.1| hypothetical protein EUBIFOR_00519 [Eubacterium biforme DSM 3989] Length = 255 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 10/133 (7%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R GMSQ++L E + ++ Q V ++E G L+ +S+V + I+ Sbjct: 7 ILELRTQRGMSQDELAEKVFVSRQAVSRWENGETVPNTETLKLLSKVFDVSINTLLGSPR 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV------KVRQKIIEL-VRSIVSS-- 129 + + I N + + +IE+ V++++S Sbjct: 67 KLVCQCCGMPLEDDNIIGHNHDGSFNEDYCKWCYADGTYTYNDMDDLIEVCVKNMISENF 126 Query: 130 -EKKYRTIEEECM 141 E++ R+ +E + Sbjct: 127 TEEQARSYMKELL 139 >gi|183601514|ref|ZP_02962884.1| hypothetical protein BIFLAC_02632 [Bifidobacterium animalis subsp. lactis HN019] gi|219683947|ref|YP_002470330.1| transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|241190987|ref|YP_002968381.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196393|ref|YP_002969948.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219120|gb|EDT89761.1| hypothetical protein BIFLAC_02632 [Bifidobacterium animalis subsp. lactis HN019] gi|219621597|gb|ACL29754.1| predicted transcriptional regulator [Bifidobacterium animalis subsp. lactis AD011] gi|240249379|gb|ACS46319.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250947|gb|ACS47886.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793976|gb|ADG33511.1| Xre-type transcriptional regulator [Bifidobacterium animalis subsp. lactis V9] Length = 335 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 30/85 (35%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R M+QE+L +G++ Q V K+E +L + ++ + Sbjct: 6 NLQYLRGSHNMTQEQLAMLIGVSRQSVSKWESEKAYPEMDKLLMLCDMFGVSLDDLVMGD 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQ 102 +S+ + ++ Sbjct: 66 VRNGIAMSANHVEDGLPKAPMPEME 90 >gi|169344592|ref|ZP_02865558.1| LexA repressor [Clostridium perfringens C str. JGS1495] gi|169297202|gb|EDS79314.1| LexA repressor [Clostridium perfringens C str. JGS1495] Length = 415 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 30/76 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R ++QE++ + LGI + YE G L +S+++ + + Sbjct: 11 ENLKSFRKQNKLTQEEMAKKLGIARSTLSYYEHGSIEPNIFVLISLSKLMNCSLDNLIGL 70 Query: 77 SPTVCSDISSEENNVM 92 + + E N Sbjct: 71 NKEKIIPMPFENNKYP 86 >gi|168483951|ref|ZP_02708903.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|172042755|gb|EDT50801.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|332201874|gb|EGJ15944.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] Length = 69 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R+ L ++Q +L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVELDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 78 PTVC 81 Sbjct: 66 EDEK 69 >gi|168183947|ref|ZP_02618611.1| transcriptional regulator [Clostridium botulinum Bf] gi|182672949|gb|EDT84910.1| transcriptional regulator [Clostridium botulinum Bf] Length = 89 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++I RMI G +Q + + I + + KYE G L IS I +F Sbjct: 30 IAEKIYKLRMIKGCTQREFAKMCSIGYSSLCKYELG-FNPSIKNLNKISNAFNIDIGYFL 88 >gi|126729053|ref|ZP_01744867.1| transcriptional regulator [Sagittula stellata E-37] gi|126710043|gb|EBA09095.1| transcriptional regulator [Sagittula stellata E-37] Length = 70 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 27/60 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +++ R+ G++Q +L + ++ + + E GV + ++ L + F +S Sbjct: 11 LKVHRLKAGLTQMELANMVEVSRKTINTVENGVFVPSTTLALRLARCLGVSVEDLFTLSD 70 >gi|168784916|ref|ZP_02809923.1| irep [Escherichia coli O157:H7 str. EC869] gi|261225385|ref|ZP_05939666.1| XRE family transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261255362|ref|ZP_05947895.1| XRE family transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|6318606|gb|AAF06963.1|AF157599_2 Eco0109IREP [Escherichia coli] gi|189374949|gb|EDU93365.1| irep [Escherichia coli O157:H7 str. EC869] gi|240119359|dbj|BAH79222.1| putative transcriptional regulator C.EcoO109I [Escherichia coli O157:H7] Length = 101 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ G++QE+LG +GI + +YEKG + S + I+++L P+S+F Sbjct: 5 RLKKARLNAGLTQEQLGILVGIDECSASARMNQYEKGKHMPDFSLTKKIADLLNVPVSYF 64 Query: 74 FDVSPTVCS 82 + + Sbjct: 65 YTPEDDLAE 73 >gi|47092424|ref|ZP_00230214.1| Transcriptional regulator [Listeria monocytogenes str. 4b H7858] gi|47019201|gb|EAL09944.1| Transcriptional regulator [Listeria monocytogenes str. 4b H7858] Length = 84 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 26/78 (33%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ N + + +GK I+ R S + L E GI + E + + Sbjct: 1 MLRNIVMTRGEFMKIGKNIKRFRTRKNWSLQMLSEESGIPASTLSDLETDKYLPNVEKAK 60 Query: 61 HISEVLESPISFFFDVSP 78 +++ L + Sbjct: 61 KLADALGVTTDDLLEEDK 78 >gi|295700850|ref|YP_003608743.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440063|gb|ADG19232.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 211 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K + ++G+R+R R ++ E G++ + K E G+ LQ I Sbjct: 6 TKSADTSSTDLGRRVRAARQAQDLTLETASRLCGVSRSTLSKIENGLMSPTFDVLQKIVL 65 Query: 65 VLESPISFFFDVSP 78 L+ I F +P Sbjct: 66 GLKIEIGELFGSTP 79 >gi|260662800|ref|ZP_05863694.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN] gi|260552881|gb|EEX25880.1| DNA-binding protein [Lactobacillus fermentum 28-3-CHN] Length = 204 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I R GM+Q L E L I+ + + K+E G + + + + ++L+ ++ Sbjct: 4 IKIGKFIASCRKERGMTQANLAEKLRISDRAISKWETGKSMPDSGIMLELCDLLKINVNE 63 Query: 73 FFDVSPTVCSDISSEENNV 91 + Sbjct: 64 LLSGERIMTEAYDKRAEEN 82 >gi|242240629|ref|YP_002988810.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242132686|gb|ACS86988.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 93 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 4/77 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQ----KYEKGVNRVGASRLQHISEVLESP 69 + +R++ R+ ++QE+LG GI + +YE G + + + L P Sbjct: 1 MIPERLKNARLRANLTQEQLGVLAGIGEETAYSRLSQYESGTHTPSFKTVCAFAHALNVP 60 Query: 70 ISFFFDVSPTVCSDISS 86 S+F+ V + I + Sbjct: 61 ESYFYTVDDSFAEAILT 77 >gi|225863642|ref|YP_002749020.1| DNA-binding protein [Bacillus cereus 03BB102] gi|225789107|gb|ACO29324.1| DNA-binding protein [Bacillus cereus 03BB102] Length = 403 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDDDEMVELIQ 74 >gi|187921632|ref|YP_001890664.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187720070|gb|ACD21293.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 212 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 29/78 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 Query: 75 DVSPTVCSDISSEENNVM 92 T + S + + Sbjct: 95 APQKTPEAIAVSGPHEIP 112 >gi|218248928|ref|YP_002374299.1| XRE family transcriptional regulator [Cyanothece sp. PCC 8801] gi|218169406|gb|ACK68143.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 8801] Length = 333 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I +G + R G+SQE L E + + E+G + + I + L+ I Sbjct: 5 ILIELGNFLHKIRTRKGLSQEYLAELADLDRTYISLLERGKRNPSLTCINSIFQALDIDI 64 Query: 71 SFFFDVSP 78 F + Sbjct: 65 IEIFQLFD 72 >gi|167772023|ref|ZP_02444076.1| hypothetical protein ANACOL_03397 [Anaerotruncus colihominis DSM 17241] gi|167665821|gb|EDS09951.1| hypothetical protein ANACOL_03397 [Anaerotruncus colihominis DSM 17241] Length = 75 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 30/67 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R SQ +G+ LG++ QQ YEKG + L ++++ + + + Sbjct: 7 RRLRELREDHDYSQADIGKRLGMSKQQYFLYEKGYRDIPTPVLIALADLYGTSVDYLVGR 66 Query: 77 SPTVCSD 83 + Sbjct: 67 TDNPSPP 73 >gi|159039221|ref|YP_001538474.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157918056|gb|ABV99483.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 402 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 1/105 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFFF 74 G+RI+L R G++QE + G+T +K+E G V S I+ +L + Sbjct: 12 GQRIKLYRRRAGLTQEVCAQLKGVTVSAWRKWESGERSVNTLSDWVDIARILRVRDLYRI 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 P ++ ++ + + ++R + Sbjct: 72 TGLPVGHLPDDPVDHELVGPLRAAIHAYGPPEVELMPLPELRAAV 116 >gi|15923387|ref|NP_370921.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus Mu50] gi|156978725|ref|YP_001440984.1| hypothetical protein SAHV_0394 [Staphylococcus aureus subsp. aureus Mu3] gi|221141372|ref|ZP_03565865.1| hypothetical protein SauraJ_06998 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|255005192|ref|ZP_05143793.2| hypothetical protein SauraM_01955 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257878698|ref|ZP_05658351.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|282926490|ref|ZP_06334121.1| transcriptional regulator [Staphylococcus aureus A9765] gi|289168175|ref|YP_003446444.1| transcriptional regulator, Tn916 [Streptococcus mitis B6] gi|294615421|ref|ZP_06695293.1| putative transcriptional regulator [Enterococcus faecium E1636] gi|304380403|ref|ZP_07363083.1| probable transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|307291604|ref|ZP_07571480.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|14246165|dbj|BAB56559.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus Mu50] gi|156720860|dbj|BAF77277.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257812926|gb|EEV41684.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|269939971|emb|CBI48345.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus TW20] gi|282592210|gb|EFB97230.1| transcriptional regulator [Staphylococcus aureus A9765] gi|288907742|emb|CBJ22579.1| transcriptional regulator, Tn916 [Streptococcus mitis B6] gi|291591703|gb|EFF23340.1| putative transcriptional regulator [Enterococcus faecium E1636] gi|302750285|gb|ADL64462.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341078|gb|EFM06998.1| probable transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|306497365|gb|EFM66906.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|315035980|gb|EFT47912.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|323465490|gb|ADX77643.1| transcriptional regulator, putative [Staphylococcus pseudintermedius ED99] gi|329313111|gb|AEB87524.1| Transcriptional regulator, Tn916 [Staphylococcus aureus subsp. aureus T0131] Length = 117 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 1/106 (0%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D VG I+ RM G+++E++G + I + + E L + Sbjct: 2 RKKEDKYDFRAVGLAIKEARMKRGLTREQVGTMIEIDPRYLTNIENKGQHPSTQVLYDLV 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +L I FF + + + T L L + Sbjct: 62 SLLHVSIDEFFLPTDNLIKSTRRLQVEKYMDSFTDKELSLMEALAK 107 >gi|75760227|ref|ZP_00740282.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492280|gb|EAO55441.1| Transcriptional regulator, MerR family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 186 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 1/129 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 5 NINVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF + T ++ + G D + ++ L+ SS + Sbjct: 65 NFF-LEDTNTEELVVRADQRKKMTFPESGNVSYELLSPNLDGSLELALMNLLPQTASSME 123 Query: 132 KYRTIEEEC 140 EE Sbjct: 124 PVAHKGEEI 132 >gi|294495804|ref|YP_003542297.1| MerR family transcriptional regulator [Methanohalophilus mahii DSM 5219] gi|292666803|gb|ADE36652.1| transcriptional regulator, MerR family [Methanohalophilus mahii DSM 5219] Length = 190 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R MSQE+L + + + K E G + L +I+ L + F Sbjct: 7 LGEKISQLRQSREMSQEELAKASNNDVELIDKLENGALVPSLTPLFNIARALGVRLGTFL 66 Query: 75 DVSPTVCSDISSE 87 D +P + Sbjct: 67 DDAPQNGPVLVKS 79 >gi|237800519|ref|ZP_04588980.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023379|gb|EGI03436.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. oryzae str. 1_6] Length = 115 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 11/109 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +I+ R +SQ L E +G + +YE+G+N G +L I+ V Sbjct: 1 MVGAKIKALRKSSTLSQADLAEKIGCDAPLIGRYERGINLPGIEQLIRIATVFNVAPGEL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 V +L+ Q+D + ++II L Sbjct: 61 LPGGQDVLRTRLISLRQ-----------ELSEKINQVDSPESLEEIIRL 98 >gi|218290717|ref|ZP_03494799.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239255|gb|EED06454.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 77 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RIR R GM+ E L +GI+ + E G V L IS+VL+ + + Sbjct: 7 VKIGSRIRSARQSKGMTVESLANAIGISKGSLSAIETGKRPVSLLNLTRISDVLDISLDY 66 Query: 73 FFDVSPTVC 81 +S Sbjct: 67 LVGLSDNPE 75 >gi|30264432|ref|NP_846809.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47529886|ref|YP_021235.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49187254|ref|YP_030506.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49478619|ref|YP_038413.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141145|ref|YP_085685.1| transcriptional regulator [Bacillus cereus E33L] gi|65321730|ref|ZP_00394689.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|190566894|ref|ZP_03019810.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196034394|ref|ZP_03101803.1| DNA-binding protein [Bacillus cereus W] gi|196039275|ref|ZP_03106581.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196044751|ref|ZP_03111985.1| DNA-binding protein [Bacillus cereus 03BB108] gi|218905557|ref|YP_002453391.1| DNA-binding protein [Bacillus cereus AH820] gi|225866344|ref|YP_002751722.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227817141|ref|YP_002817150.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228916995|ref|ZP_04080555.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935683|ref|ZP_04098496.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948076|ref|ZP_04110360.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229093433|ref|ZP_04224536.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|229123903|ref|ZP_04253095.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|229186602|ref|ZP_04313763.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] gi|229602882|ref|YP_002868651.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254721950|ref|ZP_05183739.1| MerR family transcriptional regulator [Bacillus anthracis str. A1055] gi|254736465|ref|ZP_05194171.1| MerR family transcriptional regulator [Bacillus anthracis str. Western North America USA6153] gi|254750941|ref|ZP_05202980.1| MerR family transcriptional regulator [Bacillus anthracis str. Vollum] gi|254757730|ref|ZP_05209757.1| MerR family transcriptional regulator [Bacillus anthracis str. Australia 94] gi|301055871|ref|YP_003794082.1| XRE family transcriptional regulator [Bacillus anthracis CI] gi|30259090|gb|AAP28295.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47505034|gb|AAT33710.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49181181|gb|AAT56557.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49330175|gb|AAT60821.1| probable transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974614|gb|AAU16164.1| probable transcriptional regulator [Bacillus cereus E33L] gi|190561885|gb|EDV15854.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195992936|gb|EDX56895.1| DNA-binding protein [Bacillus cereus W] gi|196024239|gb|EDX62912.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196029902|gb|EDX68503.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218537657|gb|ACK90055.1| DNA-binding protein [Bacillus cereus AH820] gi|225788250|gb|ACO28467.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227003894|gb|ACP13637.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228596861|gb|EEK54520.1| Transcriptional regulator, MerR [Bacillus cereus BGSC 6E1] gi|228659205|gb|EEL14853.1| Transcriptional regulator, MerR [Bacillus cereus 95/8201] gi|228689904|gb|EEL43708.1| Transcriptional regulator, MerR [Bacillus cereus Rock3-42] gi|228811434|gb|EEM57771.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823921|gb|EEM69740.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842602|gb|EEM87690.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267290|gb|ACQ48927.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|300378040|gb|ADK06944.1| transcriptional regulator, XRE family [Bacillus cereus biovar anthracis str. CI] gi|324328264|gb|ADY23524.1| MerR family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 181 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + E + ++ Sbjct: 61 LLLEQKDRLKVVKKVERKYSVYGKDEQRIEHV 92 >gi|326388769|ref|ZP_08210357.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326206743|gb|EGD57572.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 243 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 30/75 (40%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P ++ +G R+R R +S L G++ + K E G + + ++ L Sbjct: 49 PRALEKALGARVRQLRRQQDLSVADLAGAAGLSTGMLSKIENGQISASLTSIHSLALALN 108 Query: 68 SPISFFFDVSPTVCS 82 PIS F ++ Sbjct: 109 VPISSLFALAEERQD 123 >gi|296876650|ref|ZP_06900698.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|312867662|ref|ZP_07727868.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|322389318|ref|ZP_08062877.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|296432152|gb|EFH17951.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|311096725|gb|EFQ54963.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|321143982|gb|EFX39401.1| XRE family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 66 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R+ LG+SQ L + +G++ Q + E G ++++ L + ++ F Sbjct: 2 NRVKEYRVNLGLSQLALAKSIGVSRQTINMIENGKYNPSLDLCINLAKELGTDLNSLFWR 61 Query: 77 SPTVC 81 Sbjct: 62 IDDDE 66 >gi|134103762|ref|YP_001109423.1| XRE family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916385|emb|CAM06498.1| transcriptional regulator, XRE family with cupin sensor [Saccharopolyspora erythraea NRRL 2338] Length = 194 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 6/109 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R+R R G + L E GI + + E G + G L ++ + Sbjct: 6 DTVLSAVGPRLRALRRRSGATLTALSETTGIPVSTLSRLESGHRKPGLELLLPLANAYQV 65 Query: 69 PISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 P+ P V + + ++ G + F QI Sbjct: 66 PLDELVGAPASGDPRVHPRPITRNGMTVIPLTRKPGG--LQAFKQILPA 112 >gi|118587226|ref|ZP_01544654.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] gi|118432368|gb|EAV39106.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] Length = 143 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 48/106 (45%), Gaps = 5/106 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ +R G+SQ+++ + L +T Q V +EK + L+ +S++ Sbjct: 1 MAIGQKLQEQRQRNGLSQQQVAQKLNVTRQTVSSWEKDRTIPDPNSLKKLSKIYHET--- 57 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++ T + + + + + ++ + F + + ++ Sbjct: 58 --NILDTQKDNKNKQSDEGLIILTLALVTFVIMPFGLLATPIIIKR 101 >gi|13471465|ref|NP_103031.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14022207|dbj|BAB48817.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 187 Score = 45.6 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 33/86 (38%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N + +G+RI R++ S +L E G++ + E+G+ A+ L I+ Sbjct: 5 ANDISSTIGRRIHAERVMRDWSLAELAERSGVSKAMLSTIERGMTSPTATLLVRIAAAFG 64 Query: 68 SPISFFFDVSPTVCSDISSEENNVMD 93 +S + + E + Sbjct: 65 MTLSTLIARAELQGGGLLREADQPAW 90 >gi|300119183|ref|ZP_07056880.1| MerR family transcriptional regulator [Bacillus cereus SJ1] gi|298723403|gb|EFI64148.1| MerR family transcriptional regulator [Bacillus cereus SJ1] Length = 181 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + E + ++ Sbjct: 61 LLLEQKDRLKVVKKGERKYSVYGKDEQRIEHV 92 >gi|298248193|ref|ZP_06971998.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297550852|gb|EFH84718.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 922 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 7/72 (9%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++IPN + ++ R G +Q +L L + + VQ +E+G + Sbjct: 1 MTTRRIPNVL-------LKQAREEKGWTQRRLALELDVDEKTVQSWERGTRFPSLEYRKQ 53 Query: 62 ISEVLESPISFF 73 +S++L P+ Sbjct: 54 LSDLLGKPLEQL 65 >gi|325678189|ref|ZP_08157818.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110081|gb|EGC04268.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 195 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 6/83 (7%) Query: 9 NPVDINVG------KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +P ++ VG R++ R G++ + L I + YEK N ++ L + Sbjct: 76 SPFNMVVGGNKMFDNRLKQLREARGLTMRQAAADLDIPYTTYVHYEKDENEANSTALVKM 135 Query: 63 SEVLESPISFFFDVSPTVCSDIS 85 + + + D Sbjct: 136 ALYYGVSTDYLLGLPTKTEKDSP 158 >gi|289425420|ref|ZP_06427197.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK187] gi|289154398|gb|EFD03086.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK187] Length = 508 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ IR R GM+Q +L E L + + + E G + + I+E LESPI Sbjct: 9 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64 >gi|227537268|ref|ZP_03967317.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227242872|gb|EEI92887.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 259 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 26/67 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R G++Q++ + + I V YE+ L+ I+E + + Sbjct: 4 IASNLKYIRKKKGLTQQQFADLMEIKRASVGAYEEDRAEPKYELLKKIAEYFDLTMDELA 63 Query: 75 DVSPTVC 81 + S Sbjct: 64 NDSIDDK 70 >gi|196230222|ref|ZP_03129085.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] gi|196225819|gb|EDY20326.1| transcriptional regulator, XRE family [Chthoniobacter flavus Ellin428] Length = 207 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 6/92 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + R+R R G+S + L G++ + E+G + A L+ ++ L + + Sbjct: 16 LNQRIAGRVRELRAAQGLSLDTLANRSGVSRSMISLIERGESSPTAVVLEKLASGLGATL 75 Query: 71 SFFFDVS------PTVCSDISSEENNVMDFIS 96 FD PT ++ D S Sbjct: 76 PSLFDGLSAKASGPTSPVSRREDQPEWRDPAS 107 >gi|167648095|ref|YP_001685758.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167350525|gb|ABZ73260.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 78 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R R G+SQE L + +G+ V + E+G+ ++ ++VL + Sbjct: 11 ALGINVRRLRKERGLSQEALADAVGLAPTYVGQIERGLRNPTLDVVERFADVLGAEALDL 70 Query: 74 FDVSPTV 80 VSP Sbjct: 71 LRVSPDP 77 >gi|160944796|ref|ZP_02092023.1| hypothetical protein FAEPRAM212_02312 [Faecalibacterium prausnitzii M21/2] gi|158443980|gb|EDP20984.1| hypothetical protein FAEPRAM212_02312 [Faecalibacterium prausnitzii M21/2] Length = 120 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 11/114 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R+ GM+QE+L +G+ + E G + L I L+ Sbjct: 7 IGKRIRTCRLAKGMTQEQLANEVGVVVTHISHIETGNSVPSLKTLIDIINALDCSADELL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + + D T + +I +++ ++ L +S+ Sbjct: 67 CIEIKKAKPV-------FDSWMTEQLADCSADEAKI----IKETVVNLKKSLRK 109 >gi|160935696|ref|ZP_02083071.1| hypothetical protein CLOBOL_00586 [Clostridium bolteae ATCC BAA-613] gi|158441440|gb|EDP19150.1| hypothetical protein CLOBOL_00586 [Clostridium bolteae ATCC BAA-613] Length = 112 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 35/62 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ +G +Q+++ + LG+T YE G + ++L+ ++ +L + SF + Sbjct: 5 EQLKKARVSMGYTQQQVADALGLTASTYCGYETGKRQPDVAKLKQLARILNTTGSFLLET 64 Query: 77 SP 78 P Sbjct: 65 EP 66 >gi|153853928|ref|ZP_01995261.1| hypothetical protein DORLON_01252 [Dorea longicatena DSM 13814] gi|149753310|gb|EDM63241.1| hypothetical protein DORLON_01252 [Dorea longicatena DSM 13814] Length = 119 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/111 (12%), Positives = 40/111 (36%), Gaps = 6/111 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ LG+++++ + + I+ +YE G + ++EV + + Sbjct: 7 ERLKECRLKLGITKQEAAKRIQISQPAYLRYEAGSRNPSIQIISKMAEVFSTSTDYLIGK 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 S + E S L + + ++ +++ Sbjct: 67 SADSSPNRLVVEQ------SDTPALFSLVETCKTLNAAQLMRLTAYAKALS 111 >gi|228932646|ref|ZP_04095521.1| hypothetical protein bthur0009_11230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827018|gb|EEM72777.1| hypothetical protein bthur0009_11230 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 156 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 46/110 (41%), Gaps = 5/110 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R+ G +Q+ L E LG++ Q + +E+ L +++V I + Sbjct: 7 NKIKELRIAKGWTQKSLAEKLGVSSQVISNWERAYTSPNQEDLIKLAKVFNVTIDYILSS 66 Query: 77 SPT-----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ ++ M + ++ + + +D+ + ++I++ Sbjct: 67 DKIINLNYDIEKITEYVSSSMLKQDEKELIEKVKKHTKTNDITLFEQILD 116 >gi|268589266|ref|ZP_06123487.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291315284|gb|EFE55737.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 107 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V+I +G +R +R+ ++ E + + L ++ QQV +YE G+N + S + L Sbjct: 8 SKVNILIGNYLRQKRIENDLTGEDISKLLHVSQQQVSRYENGINTISFSLILLFLIKLNI 67 Query: 69 PISFFF 74 + FF Sbjct: 68 SVESFF 73 >gi|187939539|gb|ACD38687.1| hypothetical helix-turn-helix protein [Pseudomonas aeruginosa] Length = 132 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 12/115 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R LGM+Q L ++ YEKG A L ++ + + Sbjct: 22 IGERLKEERERLGMNQTDFAAQLNVSKNSQYNYEKGERSPDALYLSA-ADAFGVDVLYVI 80 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + ++ + ++ D R + + R++ + Sbjct: 81 TGRRLPAELDALSQSELD-----------VLGYMTSMDEADRAAYVRMGRALSEA 124 >gi|149276297|ref|ZP_01882441.1| transcriptional regulator [Pedobacter sp. BAL39] gi|149232817|gb|EDM38192.1| transcriptional regulator [Pedobacter sp. BAL39] Length = 258 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R G +Q++ + +GI + YE+ L+ I+E + I F Sbjct: 4 ISANLKYLRKKKGHTQQQFADAMGIKRSLIGAYEEDRAEPKYDLLKKIAEYFDLTIDEFI 63 Query: 75 DV 76 + Sbjct: 64 NE 65 >gi|146281047|ref|YP_001171200.1| Cro/CI family transcriptional regulator [Pseudomonas stutzeri A1501] gi|145569252|gb|ABP78358.1| transcriptional regulator, Cro/CI family [Pseudomonas stutzeri A1501] Length = 75 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +IR +R G SQ+ L + + + E+G + +L I+ LE Sbjct: 6 KALGGKIREQRKARGFSQDALALACKVDRSYMGRIERGEVNITVEKLYRIAWTLECDPKC 65 Query: 73 FF 74 Sbjct: 66 LL 67 >gi|37524887|ref|NP_928231.1| hypothetical protein plu0895 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784312|emb|CAE13190.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 117 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 36/74 (48%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ ++K + + +G+R++ R+ ++Q ++ E LG+T + V EKG ++ Sbjct: 8 MMLHEKTASAIAEELGERLKQARLNNDLTQAEIAELLGVTRKTVLNAEKGKVQLEIFVAI 67 Query: 61 HISEVLESPISFFF 74 + L + F Sbjct: 68 MAALNLTEQLDLFL 81 >gi|95929111|ref|ZP_01311856.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] gi|95135012|gb|EAT16666.1| transcriptional regulator, XRE family with cupin sensor [Desulfuromonas acetoxidans DSM 684] Length = 198 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 32/82 (39%), Gaps = 1/82 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ N + ++ +G ++R R M+ + L ++ + + E S L Sbjct: 1 MMENIREEVK-ELQIGMKVRNLRQERRMTLQDLANMTRLSKPLLSQIENNQVIPPLSTLL 59 Query: 61 HISEVLESPISFFFDVSPTVCS 82 I++ E ++ FF+ Sbjct: 60 RIAKAFEVSLNCFFEDERDNTQ 81 >gi|325263349|ref|ZP_08130084.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324031742|gb|EGB93022.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 354 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 38/95 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R GM+QE+L LGI+ V K+E + + L ++ L + + Sbjct: 5 LGAHIAALRKTKGMTQEQLAAVLGISAPAVSKWETDSSCPDITLLCPLARALGTNLDTLL 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 T+ + +E N + G + +Q Sbjct: 65 QFEETLTDEQIAEHINQIIEAGRAKGKEPAEELLQ 99 >gi|317403702|gb|EFV84189.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 189 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 34/93 (36%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V +VG ++ R G+SQ L E GI+ + + E G + + S L +++ LE Sbjct: 12 SDVLTHVGANLKRLRKAAGLSQGALAEASGISRRMIAGLEAGNSNISLSSLDKLAQALEV 71 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 I + S L Sbjct: 72 GFVDLVSDPAPERRRIEARAWRGKRPGSQAMLL 104 >gi|313610053|gb|EFR85399.1| DNA-binding protein [Listeria monocytogenes FSL F2-208] Length = 89 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I+ R G+SQE++ L + Q + K+E+G++ + L ISEVLE+ +S Sbjct: 4 ENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSDMLISISEVLETSVSTLLGE 63 >gi|308271699|emb|CBX28307.1| hypothetical protein N47_G36310 [uncultured Desulfobacterium sp.] Length = 373 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 12/104 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+++ R G+SQ +L +GI Q V E G S ++++L + F + Sbjct: 12 RLKVIRQSAGISQIQLASLVGIKRQAVYDIECGKYVPNTSVALQMAKILGCKVEDLFYHN 71 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 +D S + + +I VK+R +++ Sbjct: 72 LPERTDNISLADKSISPN------------NRISVVKIRDRLVA 103 >gi|302385536|ref|YP_003821358.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302196164|gb|ADL03735.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 110 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 28/74 (37%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +GKR+ RR ++QE L E +T Q + E G + + + LE Sbjct: 2 DDLLKEIGKRMYDRRKQKNLTQEALAEKANVTPQTISTAELGHKAMRPETIISVCNALEI 61 Query: 69 PISFFFDVSPTVCS 82 + T Sbjct: 62 STDYLLRGDITPSD 75 >gi|301386540|ref|ZP_07234958.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato Max13] gi|330879318|gb|EGH13467.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330941035|gb|EGH43955.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. pisi str. 1704B] Length = 127 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 4/97 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R +SQ L E +G V +YE+G G +L I+ V Sbjct: 18 VGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATVFNVAPGELL 77 Query: 75 ----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 DV T + E + + +P+ L+ F Sbjct: 78 PGGQDVLRTRLLSLRQEITERIAEVDSPEYLEEMLNF 114 >gi|298246895|ref|ZP_06970700.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297549554|gb|EFH83420.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 869 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G R+R R+ +SQE L E LG++ + + ++E+ AS +S Sbjct: 1 MQFGTRLRQERIQRHLSQEALAEALGVSPRSIARWEQDQALPQASVRLQLSRFFNLHPKE 60 Query: 73 FFDVSPT 79 FF Sbjct: 61 FFGEHEA 67 >gi|237733222|ref|ZP_04563703.1| predicted protein [Mollicutes bacterium D7] gi|229383766|gb|EEO33857.1| predicted protein [Coprobacillus sp. D7] Length = 189 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G++I R G+ QE+LG +G+ + ++E ++ L +S++ E + + Sbjct: 4 GEKIHELRKNKGLLQEELGTLIGVDTSVISRWESSQRQIKIEDLTKLSDLFEVSVDYL 61 >gi|226363378|ref|YP_002781160.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226241867|dbj|BAH52215.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 206 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R++ R G + +L E GI+ + + E G + + ++ + P+ Sbjct: 16 AVGPRLKALRQQRGATLAQLSESTGISVSTLSRLEAGQRKPTLELMLLLARAHQLPLDEL 75 Query: 74 FD 75 D Sbjct: 76 VD 77 >gi|225017725|ref|ZP_03706917.1| hypothetical protein CLOSTMETH_01654 [Clostridium methylpentosum DSM 5476] gi|224949518|gb|EEG30727.1| hypothetical protein CLOSTMETH_01654 [Clostridium methylpentosum DSM 5476] Length = 81 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 28/64 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R+ +Q ++ L I+ +YE G R + ++ ++ + + ++ Sbjct: 9 ERIRNLRIDHDYTQGEIAGLLQISQSTYAQYEVGKRRFPIKLIVKLALFYKTSVDYLLEL 68 Query: 77 SPTV 80 + Sbjct: 69 TDDP 72 >gi|289428534|ref|ZP_06430218.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J165] gi|295130785|ref|YP_003581448.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK137] gi|289158228|gb|EFD06447.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J165] gi|291375959|gb|ADD99813.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes SK137] Length = 508 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ IR R GM+Q +L E L + + + E G + + I+E LESPI Sbjct: 9 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64 >gi|254416780|ref|ZP_05030530.1| hypothetical protein MC7420_100 [Microcoleus chthonoplastes PCC 7420] gi|254417544|ref|ZP_05031282.1| hypothetical protein MC7420_5296 [Microcoleus chthonoplastes PCC 7420] gi|196175642|gb|EDX70668.1| hypothetical protein MC7420_5296 [Microcoleus chthonoplastes PCC 7420] gi|196176520|gb|EDX71534.1| hypothetical protein MC7420_100 [Microcoleus chthonoplastes PCC 7420] Length = 77 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG--ASRLQHISEVLESPISFF 73 G ++ R LG++Q+++ + +G+T Q V +E G + Q + +L+ P+ Sbjct: 4 GHKLMKLRKRLGLTQKQVADAVGVTDQTVSNWEAGRFEPRLTIRQTQALCSILQCPLDEL 63 Query: 74 FDVSPTVCSDISSE 87 + SD E Sbjct: 64 PSFNEAQESDSKRE 77 >gi|91772690|ref|YP_565382.1| MerR family transcriptional regulator [Methanococcoides burtonii DSM 6242] gi|91711705|gb|ABE51632.1| HTH-type transcriptional regulator [Methanococcoides burtonii DSM 6242] Length = 192 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 30/73 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ IR R M+ E+L + ++K EKG + L I+ L + F Sbjct: 7 VGENIRQFREDRSMTVEELANESQSNVELIEKLEKGELIPSLTPLLKIARALGVRLGTFL 66 Query: 75 DVSPTVCSDISSE 87 D +P ++ Sbjct: 67 DDTPQKGPIVNRS 79 >gi|89100699|ref|ZP_01173555.1| hypothetical protein B14911_02414 [Bacillus sp. NRRL B-14911] gi|89084574|gb|EAR63719.1| hypothetical protein B14911_02414 [Bacillus sp. NRRL B-14911] Length = 179 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 47/124 (37%), Gaps = 13/124 (10%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 R ++Q ++ E + I + E G+ + I VL F + Sbjct: 8 RLRKKRNLTQAEIAELIHIDRAYYSQIESGLRNPSEEISRSIGRVLNIDPLLLFSDTNAF 67 Query: 81 CSD--------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKV-----RQKIIELVRSIV 127 S+ + ++ P G++ ++FI D ++ +KI++L + ++ Sbjct: 68 QDAFFQTQSILAHSDLDLRYTWVYNPTGMEKVQHFIGARDDELNYTIDAKKILDLKKKVI 127 Query: 128 SSEK 131 ++K Sbjct: 128 DTQK 131 >gi|327405551|ref|YP_004346389.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327321059|gb|AEA45551.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 273 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++L R SQE++ LG+T YE + G L +S PI Sbjct: 1 MKLGNNLKLVRKSKKKSQEEVAADLGLTRSSYSGYENQIAEPGIDTLIALSSYYGVPIDA 60 Query: 73 FFDVS 77 Sbjct: 61 LLTKD 65 >gi|325273200|ref|ZP_08139486.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324101665|gb|EGB99225.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 182 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQAIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVE 60 Query: 73 FFDVSPTVCSDI 84 FF V S Sbjct: 61 FFSVELEAQSPA 72 >gi|313904771|ref|ZP_07838144.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313470374|gb|EFR65703.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 204 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 31/70 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VGK I R GM+Q L E LGI+ + + K+E G + + + E L+ ++ Sbjct: 4 IKVGKFIAACRKEQGMTQANLAEKLGISDRAISKWETGKSMPDTGIMLELCEHLKINVNE 63 Query: 73 FFDVSPTVCS 82 + Sbjct: 64 LLSGEKIMAE 73 >gi|302385533|ref|YP_003821355.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302196161|gb|ADL03732.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 89 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGI-----TFQQVQKYEKGVNRVGASRLQHISEVL 66 D G I+ R+ G++QE+ L + + E G V S L + ++ Sbjct: 7 DEKFGHNIQRIRLSRGLTQEQTVAQLQVLGSPLSRSTYSLIEMGKGNVFVSDLVGLQKIF 66 Query: 67 ESPISFFFDV 76 S FF+ Sbjct: 67 NVDYSAFFEG 76 >gi|301061892|ref|ZP_07202622.1| cupin domain protein [delta proteobacterium NaphS2] gi|300443996|gb|EFK08031.1| cupin domain protein [delta proteobacterium NaphS2] Length = 182 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 11/120 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G KK D +GKR+ R ++ + LG G+ + + + EKG S + Sbjct: 1 MAGIKK-----DQPIGKRLMKLRKEKKLTLKHLGNETGLNPRFISRVEKGEVMPPVSVIL 55 Query: 61 HISEVLESPISFFFDVSPTVCSDISSE------ENNVMDFISTPDGLQLNRYFIQIDDVK 114 +S LE S + S+E E+ + ++ + + F D K Sbjct: 56 QLSRALEVDSSLLLLEEKKRAGEKSAEGYQKRTEDYSYETLTPEARHKHLKAFKVFIDPK 115 >gi|257791280|ref|YP_003181886.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257475177|gb|ACV55497.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 139 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 42/125 (33%), Gaps = 2/125 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R GM+Q +L E G T ++ YE G + S L I+ L Sbjct: 4 GSRIRALRESRGMTQRQLAERAGCTDAAIRNYEAGRRALKGSALDAIAGALGVAPEALMP 63 Query: 76 VSPTVCSDISSEENNVMDFISTPD--GLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 V D + + G +L K+ I + + ++ Sbjct: 64 VQAESVRDALELLFRIEEEFGLRPVGGGRLAVAPGAEKAPKLAAAIKAWESQVDALDRGE 123 Query: 134 RTIEE 138 T EE Sbjct: 124 ITPEE 128 >gi|238063912|ref|ZP_04608621.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149] gi|237885723|gb|EEP74551.1| conserved hypothetical protein [Micromonospora sp. ATCC 39149] Length = 162 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 5/113 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISE 64 +P+ ++G R+R R G+S + + E ++ V YE+G V SRL +++ Sbjct: 1 MPSEYAKSLGARLRSIRQQQGLSLQGVEEKSNGRWKAVVVGSYERGDRAVTVSRLAELAD 60 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL---NRYFIQIDDVK 114 P+S V + +S+ ++ + L RY I + Sbjct: 61 FYRVPVSELLPDGSGVRHEPTSKIVLDLERLYDDASEDLAYVARYARAIQQQR 113 >gi|227432664|ref|ZP_03914637.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351546|gb|EEJ41799.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 68 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R ++Q +L L +T Q V EKG I+E + PI F Sbjct: 3 NRIQELRKSRKLTQAELAAELEVTRQTVLSLEKGKYNASLFLAHRIAEFFDLPIEDVF 60 >gi|171322013|ref|ZP_02910893.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171092688|gb|EDT37979.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 73 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 23/63 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + G +R R SQE+L E G+ V + E+G I+ E IS Sbjct: 7 HFGANVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFEVSISTL 66 Query: 74 FDV 76 Sbjct: 67 LPG 69 >gi|167754979|ref|ZP_02427106.1| hypothetical protein CLORAM_00483 [Clostridium ramosum DSM 1402] gi|167705029|gb|EDS19608.1| hypothetical protein CLORAM_00483 [Clostridium ramosum DSM 1402] Length = 73 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +++ G RI+ R+ +SQE+L G++ + E+G V ++ I+ Sbjct: 5 DKIEVKFGHRIKELRLKQNISQEELAFRCGLSKNYISDVERGTRNVSLKSIEKIANGFAV 64 Query: 69 PISFFFD 75 + FD Sbjct: 65 NLKELFD 71 >gi|164688731|ref|ZP_02212759.1| hypothetical protein CLOBAR_02378 [Clostridium bartlettii DSM 16795] gi|164602207|gb|EDQ95672.1| hypothetical protein CLOBAR_02378 [Clostridium bartlettii DSM 16795] Length = 115 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 32/64 (50%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++G+ ++ R+ M+QE + E +G++ Q V K+E G + S L ++++ Sbjct: 48 IRKSLGEVLKENRIRCKMTQEFVSESIGVSRQAVSKWENGASDPSTSNLLALAKLYGISA 107 Query: 71 SFFF 74 Sbjct: 108 EDLL 111 >gi|161507294|ref|YP_001577248.1| hypothetical protein lhv_0829 [Lactobacillus helveticus DPC 4571] gi|160348283|gb|ABX26957.1| hypothetical protein lhv_0829 [Lactobacillus helveticus DPC 4571] Length = 266 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 48/126 (38%), Gaps = 6/126 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+++ R+ LG++QE+ + +T + E +++ S L I + Sbjct: 1 MDIGKKLKSTRVFLGLTQEEFCAGI-VTESFYSRVENNKSKISMSDLISILNYHNISLYD 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF + D + ++ + + + + ++ +E + + Sbjct: 60 FFASADKTVHDKKRVMQSFINDDANR-----LKKYQHLLKPAQKKYQLEFKLMLSILNDQ 114 Query: 133 YRTIEE 138 + + Sbjct: 115 IGELPK 120 >gi|311747738|ref|ZP_07721523.1| transcriptional regulator, Cro/CI family [Algoriphagus sp. PR1] gi|126575726|gb|EAZ80036.1| transcriptional regulator, Cro/CI family [Algoriphagus sp. PR1] Length = 289 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 17/116 (14%) Query: 1 MVGNK----KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 MV K K P +GK+I R G++QE+L E + + +Q+ E G + Sbjct: 21 MVNQKLFTMKQP-----ELGKKISEMRKAKGLTQEELVEMCNLNVRTIQRIEAGEVTPRS 75 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 ++ + E L S + + F+ + +F I + Sbjct: 76 YTVKTLFEALGIR--------EERKGSDSEQSFAIPKFLYLALAGGILYFFASIFE 123 >gi|119512219|ref|ZP_01631308.1| Transcriptional Regulator, XRE family protein [Nodularia spumigena CCY9414] gi|119463117|gb|EAW44065.1| Transcriptional Regulator, XRE family protein [Nodularia spumigena CCY9414] Length = 81 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 3/84 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K+ + +G +R R G+SQE+LG + + E+GV + L Sbjct: 1 MNESKQK---ILCALGSLVRKCRTEQGISQEELGLRANLDRTYISGVERGVRNPSLTALV 57 Query: 61 HISEVLESPISFFFDVSPTVCSDI 84 ++ L +S + I Sbjct: 58 SLANGLGISVSILLENLEIEADKI 81 >gi|260844424|ref|YP_003222202.1| putative phage regulatory protein CI [Escherichia coli O103:H2 str. 12009] gi|13360529|dbj|BAB34492.1| putative regulatory protein [Escherichia coli O157:H7 str. Sakai] gi|257759571|dbj|BAI31068.1| predicted phage regulatory protein CI [Escherichia coli O103:H2 str. 12009] gi|320188717|gb|EFW63377.1| Putative regulatory protein [Escherichia coli O157:H7 str. EC1212] gi|323157248|gb|EFZ43369.1| helix-turn-helix family protein [Escherichia coli EPECa14] gi|326338913|gb|EGD62729.1| Putative regulatory protein [Escherichia coli O157:H7 str. 1125] gi|326344317|gb|EGD68076.1| Putative regulatory protein [Escherichia coli O157:H7 str. 1044] Length = 125 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 13/124 (10%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI G SQ +L +G+T Q VQ++ G AS L + EV P+ +F Sbjct: 3 RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKATPKASSLDKLVEVSGHPLHWFL--- 59 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 + + + P +L + F + ++ K + Sbjct: 60 --LPPEECEQIFTPDTMKIGPRQRELLQAFSAFPEEDQ--------EKMLQEIKDKKKSM 109 Query: 138 EECM 141 EE + Sbjct: 110 EETI 113 >gi|329894642|ref|ZP_08270447.1| Transcriptional regulator [gamma proteobacterium IMCC3088] gi|328922898|gb|EGG30227.1| Transcriptional regulator [gamma proteobacterium IMCC3088] Length = 68 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR +R LG++Q+ L +G++ Q + E G S +S V + P+ F Sbjct: 3 NNIREKRQELGLTQQDLARLVGVSRQTINAIETGKFDPSLSLAFKLSGVFKEPVEALF 60 >gi|328465408|gb|EGF36652.1| XRE family transcriptional regulator [Listeria monocytogenes 1816] Length = 72 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 22/66 (33%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK I+ R S + L E GI + E + + +++ L Sbjct: 1 MKIGKNIKRFRTRKNWSLQMLSEESGIPASTLSDLETDKYLPNVEKAKKLADALGVTTDD 60 Query: 73 FFDVSP 78 + Sbjct: 61 LLEEDK 66 >gi|317056543|ref|YP_004105010.1| XRE family transcriptional regulator [Ruminococcus albus 7] gi|315448812|gb|ADU22376.1| transcriptional regulator, XRE family [Ruminococcus albus 7] Length = 63 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R ++Q++L +G++ Q + E ++ L P+ F Sbjct: 3 NRIKELRKSQKLTQDELANAVGVSRQTINAIENDKYNPTLELAIKLARYLRIPVEDLF 60 >gi|295135771|ref|YP_003586447.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294983786|gb|ADF54251.1| XRE family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 152 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 13/138 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R + GM QE L LGI+ Q V E+ + + +L+ +++VL Sbjct: 21 HIGRKISRIRELRGMKQEALAAELGISQQSVSSLEQSEH-IEDEKLEKVAKVLGVSKEAI 79 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-------LVRSI 126 + S + + S + KI+E L I Sbjct: 80 KNFSEEKAINFFNSIYENNFTNSQGTTF-----GNNLGTFNPIDKIVELYQEKEKLYERI 134 Query: 127 VSSEKKYRTIEEECMVEQ 144 + +EK E+ + ++ Sbjct: 135 LQAEKDKVAYLEKLLDKK 152 >gi|258515642|ref|YP_003191864.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779347|gb|ACV63241.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 125 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 37/95 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R + E+L E +G+ + + YEK ++ L ++ + + Sbjct: 5 GERLYQLRKSKNLKAEELAEFVGLKRRIIFLYEKNESKPSYDTLILFADFFNVSLDYLVG 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 S +S+ + +F S ++ QI Sbjct: 65 RSDNPQRILSALSITLDEFFSDDSAPEMLPEVRQI 99 >gi|218673688|ref|ZP_03523357.1| putative transcriptional regulator protein [Rhizobium etli GR56] Length = 99 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ +G +R R LG++ L GI+ + K E G + LQ +S L Sbjct: 32 NNLEMAIGHEVRAYRKKLGITVTDLAAATGISLGMLSKIENGNISPSLTTLQSLSRALGV 91 Query: 69 PISFFF 74 P++ FF Sbjct: 92 PLTAFF 97 >gi|171779398|ref|ZP_02920362.1| hypothetical protein STRINF_01243 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282015|gb|EDT47446.1| hypothetical protein STRINF_01243 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 228 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 43/89 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR+ LG+ Q +L + LGI+ Q +EKG + + L + E+L+ +F ++ Sbjct: 5 EKLKNRRLELGLKQTELAKELGISKQSYFAWEKGTAKPTKANLAKLEELLQVSHGYFSEL 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNR 105 +++N D L+ R Sbjct: 65 EIATLYKQLTDQNQEKALTYVQDLLEQQR 93 >gi|196045124|ref|ZP_03112357.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196024126|gb|EDX62800.1| DNA-binding protein [Bacillus cereus 03BB108] Length = 403 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKSLRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDDDEMVELIQ 74 >gi|154504585|ref|ZP_02041323.1| hypothetical protein RUMGNA_02090 [Ruminococcus gnavus ATCC 29149] gi|260590057|ref|ZP_05855970.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|153795067|gb|EDN77487.1| hypothetical protein RUMGNA_02090 [Ruminococcus gnavus ATCC 29149] gi|260539569|gb|EEX20138.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 65 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+ IR R G+SQ +L E L + + + ++E G + I L + Sbjct: 1 MNLGENIRKARKAAGVSQSELAERLQVHQKDISRWENGAHAPTIEMFAKICRELNASADE 60 Query: 73 FFDV 76 ++ Sbjct: 61 ILEL 64 >gi|153931878|ref|YP_001384723.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935604|ref|YP_001388244.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|170757150|ref|YP_001782087.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|152927922|gb|ABS33422.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931518|gb|ABS37017.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|169122362|gb|ACA46198.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 82 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R ++Q+++ + L IT V YE G+ S L I++ + + Sbjct: 6 RLKGLREDRDLTQDQIADILKITRSAVANYENGIREPDISLLVKIADYFNISLDYLL 62 >gi|159037467|ref|YP_001536720.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916302|gb|ABV97729.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 162 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 5/113 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISE 64 +P+ ++G R+R R G+S + + E ++ V YE+G V SRL +++ Sbjct: 1 MPSEYAKSLGARLRSIRQQQGLSLQGVEEKSNGRWKAVVVGSYERGDRAVTVSRLAELAD 60 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL---NRYFIQIDDVK 114 P+S V + +S+ ++ + L RY I + Sbjct: 61 FYRVPVSELLPDGSGVRHEPTSKIVLDLERLYDEVSEDLAYVARYARAIQQQR 113 >gi|118462695|ref|YP_881469.1| prophage regulatory ptotein [Mycobacterium avium 104] gi|118163982|gb|ABK64879.1| putative prophage regulatory ptotein [Mycobacterium avium 104] Length = 194 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 27/74 (36%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D VG IR R G+ Q LGE LG+ Q + K E G V + I+ L + Sbjct: 4 DQEVGANIRRFRQARGLPQAALGEPLGLNQQAIAKIENGTRAVKLAEAAVIARTLGVELD 63 Query: 72 FFFDVSPTVCSDIS 85 + Sbjct: 64 DIAAGPERAGRRAA 77 >gi|126699363|ref|YP_001088260.1| putative transcriptional regulator [Clostridium difficile 630] gi|260683416|ref|YP_003214701.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260687012|ref|YP_003218145.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296450990|ref|ZP_06892737.1| transcriptional regulator [Clostridium difficile NAP08] gi|296879044|ref|ZP_06903040.1| transcriptional regulator [Clostridium difficile NAP07] gi|115250800|emb|CAJ68624.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260209579|emb|CBA63210.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260213028|emb|CBE04367.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296260208|gb|EFH07056.1| transcriptional regulator [Clostridium difficile NAP08] gi|296429917|gb|EFH15768.1| transcriptional regulator [Clostridium difficile NAP07] Length = 87 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +I++ R LG++QE+LG +G + Q + E G N IS + PI F F Sbjct: 3 NKIKILREKLGLTQEQLGRLVGTSRQAINAIETGKNEPSIWLAYDISRIFNEPIESVFLF 62 Query: 75 DVSPTVCSDISSEENNV 91 + S S Sbjct: 63 EESERKSRAQISRGEYY 79 >gi|325570037|ref|ZP_08145962.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus ATCC 12755] gi|325156865|gb|EGC69036.1| hypothetical protein HMPREF9087_2251 [Enterococcus casseliflavus ATCC 12755] Length = 293 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 30/64 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R ++Q++L L ++ + + K+E+G L ++++L +P+ Sbjct: 7 KKLKDYRSRHNLTQKELAARLFVSDKAISKWERGNGLPDIETLVRLADLLGTPVEELLKE 66 Query: 77 SPTV 80 Sbjct: 67 KKET 70 >gi|312195300|ref|YP_004015361.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311226636|gb|ADP79491.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 261 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 2/113 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-- 72 VG+ +R R +SQ +L I+ + + E G +R + +SE L+ P+ Sbjct: 11 VGQLLRDWRERRRLSQLELSNQAEISTRHLSFVETGRSRPTPEMILRLSERLDVPLRERN 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 ++ + + S L+L + V + EL+ + Sbjct: 71 LLLLAGGYAPAYPQHGLDEPELASVRTALRLVLAGHEPCPALVINRWWELLDA 123 >gi|262199589|ref|YP_003270798.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082936|gb|ACY18905.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 483 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 1/128 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R+R R + Q +L + L I+ + E + A L ++++ E ++ Sbjct: 5 MRLGARVRALRRRENLRQAQLAKMLEISPSYLNLIEHDKRPLSAPLLLKLAKLFEIDLAD 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F + E F R I V + +++L + + Sbjct: 65 FAAETDAQLEADLMEVFGDPIFDDFELSSPEVRELISTL-PGVGKAVLQLYQRYREVHQT 123 Query: 133 YRTIEEEC 140 +I + Sbjct: 124 VASISDAL 131 >gi|254723300|ref|ZP_05185088.1| DNA-binding protein [Bacillus anthracis str. A1055] Length = 374 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 P + + + + + ++ + + + ++ I+ + Sbjct: 64 LISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMECRKIIKKYYSCFPLLIQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDTDRRIEILEEAM 141 >gi|226304066|ref|YP_002764024.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226183181|dbj|BAH31285.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 214 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 1/103 (0%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 K+ PV +G R++ R ++ + L E G+T + K E+ + L Sbjct: 5 AKAKEAVEPVGPRIGARLKAARQSKRLTLDDLAEACGVTKGYLSKLERDHVNASVATLIK 64 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + VLE P+ F+ + + + ++ + F L Sbjct: 65 VCAVLEIPVGSLFE-NASAGEVVRADAMPQISFGGEKMTEYLL 106 >gi|187776895|ref|ZP_02993368.1| hypothetical protein CLOSPO_00434 [Clostridium sporogenes ATCC 15579] gi|187775554|gb|EDU39356.1| hypothetical protein CLOSPO_00434 [Clostridium sporogenes ATCC 15579] Length = 189 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 51/120 (42%), Gaps = 4/120 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+I+ R ++ ++L E ++ + + E+G+ V L I++ L+ +++FF Sbjct: 5 IGKKIKKLRTNKKLTLKELSERTNLSIGFLSQLERGLTTVAIDSLTKIAKELDVNLTYFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + ++ N +D++ + + L+ + + K+ Sbjct: 65 QAPKKNKKIVLRSYEKEILQVENNRFIKYNLS----NDLEDKSFLPRLIEILPTDSKENI 120 >gi|163857884|ref|YP_001632182.1| anaerobic benzoate catabolism transcriptional regulator [Bordetella petrii DSM 12804] gi|163261612|emb|CAP43914.1| aroK1 [Bordetella petrii] Length = 302 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 46/113 (40%), Gaps = 13/113 (11%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P + +G+R+R R I GM+++ L + G++ + + E GV L I++ Sbjct: 16 PFLVALGERVRRLRAIRGMTRKSLSQATGVSERHLANLEHGVGNASILVLLQIAKAFNCA 75 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++ + S + + + +S L R R+ +++L Sbjct: 76 LAELVGD----VTTESPDWLLIRELLSGRTESDLQRA---------REALVQL 115 >gi|37518410|emb|CAE46775.1| hypothetical protein [Yersinia enterocolitica] Length = 122 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 5/118 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLESP 69 V KR+R R G+SQEKL + + I ++ YE G S + I+ +L+ P Sbjct: 3 MVPKRLREAREAAGISQEKLSQLIDIDGKNSRSRLSSYEVGRTEPPFSLVVKIARLLDYP 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI-QIDDVKVRQKIIELVRSI 126 +F+ V + ++ N ++ L + + + R+ + +L + Sbjct: 63 EYYFYTVDDDMAKNMLEVHRNRVNPEENLQYYTLEENKKLRKQNEEARKLLKQLNECL 120 >gi|28377505|ref|NP_784397.1| prophage Lp1 protein 8 [Lactobacillus plantarum WCFS1] gi|28270337|emb|CAD63238.1| prophage Lp1 protein 8 [Lactobacillus plantarum WCFS1] Length = 120 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 17 KRIRLRRM-ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R++ R G++QE+L LG+ + YE+G + L I++ + Sbjct: 4 ERLKELRKREAGLTQERLAMQLGMAKTTLASYEQGKRQPDLETLSKIADRFSVTTDYLLG 63 Query: 76 VSPTVCSDISSEENNVMDFI 95 + T + ++ DF+ Sbjct: 64 KNGTPKWATKKDTIDLKDFL 83 >gi|87122889|ref|ZP_01078757.1| putative transcriptional regulator, [Marinomonas sp. MED121] gi|86161840|gb|EAQ63137.1| putative transcriptional regulator, [Marinomonas sp. MED121] Length = 203 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKR++ R+ G + E++ + GI + K E + +Q + + L + Sbjct: 22 LELGKRVKEIRLSKGWTLEEVSKRTGIARSTLSKIENDQVSPSFTIVQKLIQGLGMDLPQ 81 Query: 73 FF 74 F Sbjct: 82 LF 83 >gi|47569278|ref|ZP_00239963.1| repressor protein, putative [Bacillus cereus G9241] gi|47554049|gb|EAL12415.1| repressor protein, putative [Bacillus cereus G9241] Length = 70 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 10 NKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVRVEEIFTL 69 Query: 77 S 77 Sbjct: 70 E 70 >gi|314938405|ref|ZP_07845696.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314942330|ref|ZP_07849178.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314951464|ref|ZP_07854514.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314993125|ref|ZP_07858511.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314996008|ref|ZP_07861086.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313589762|gb|EFR68607.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313592365|gb|EFR71210.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313596421|gb|EFR75266.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313598947|gb|EFR77792.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313642303|gb|EFS06883.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 95 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R G+SQ +L + + +T Q V ++ G +++ +SE+L P++ F Sbjct: 29 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPMNELFSD 88 >gi|302343044|ref|YP_003807573.1| phage repressor [Desulfarculus baarsii DSM 2075] gi|301639657|gb|ADK84979.1| putative phage repressor [Desulfarculus baarsii DSM 2075] Length = 249 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 30/79 (37%), Gaps = 3/79 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K +P P +G R++ R G +Q+ E L I + + E G L Sbjct: 10 MPSKMLPLP--PEIGDRVKAARESFGYNQKDFAELLAIGQSTLSRIENGERPPSPELLYR 67 Query: 62 IS-EVLESPISFFFDVSPT 79 ++ + + P+ Sbjct: 68 LALKFPSVDLRELLVGYPS 86 >gi|260102595|ref|ZP_05752832.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260083622|gb|EEW67742.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 292 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK +R R++ G++Q ++ + I+ K E+GV+ + A L + + Sbjct: 1 MKIGKLLRETRLVAGLTQTEM-AAVAISESFYSKVERGVHNIDADTLVEVLKANHINPVQ 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF + S + +++D + + ++ + + +K+ +L + I +E++ Sbjct: 60 FFSRTLDGPMQESPHKKSILD------AGFMVKKIVRSANKRDLEKLGQLKKEIDQAEEQ 113 Query: 133 YR 134 + Sbjct: 114 GK 115 >gi|257453157|ref|ZP_05618456.1| MerR family transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|317059692|ref|ZP_07924177.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] gi|313685368|gb|EFS22203.1| transcriptional regulator [Fusobacterium sp. 3_1_5R] Length = 185 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 46/108 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVG IR R+ G+ +++ I+ + + EKG + ++ I++VLE P+ Sbjct: 5 INVGNIIRNIRLSKGLLIKEVAMKCDISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFK 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 FF I+ + IST + +++ + I+ Sbjct: 65 FFLDFEKNEDKINLLKKENRKIISTKNVRYELLSPKTATNIECMKMIL 112 >gi|255531810|ref|YP_003092182.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344794|gb|ACU04120.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 258 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 26/63 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R G +Q++ + + I + YE+ L+ I+E + I F Sbjct: 4 ISSNLKYLRKKKGHTQQQFADAMQIKRSLIGAYEEDRAEPKYDLLKKIAEYFDLTIDEFI 63 Query: 75 DVS 77 + + Sbjct: 64 NEN 66 >gi|255306587|ref|ZP_05350758.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 404 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 37/91 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I+ R ++QE+L + +G++ V K+E G + L +++ I Sbjct: 3 IKIGKVIQCLRKERNLTQEQLAKFIGVSTPAVSKWESGNSYPDIELLPLLADFFNVSIDK 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + + + + ++ + L Sbjct: 63 LLNYKIDLSEEEVMKIYKELESGFARIEIDL 93 >gi|225026228|ref|ZP_03715420.1| hypothetical protein EUBHAL_00469 [Eubacterium hallii DSM 3353] gi|224956479|gb|EEG37688.1| hypothetical protein EUBHAL_00469 [Eubacterium hallii DSM 3353] Length = 141 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 43/101 (42%), Gaps = 1/101 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+RI+ R ++QE+L + ++ V E+G+ I+ L+ Sbjct: 41 KAVGQRIKAAREAKNLTQEELAALVNLSTTHVSVIERGLKVTKLDTFVAIANALDVSADA 100 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 DV + +++E +++++ + + ++ + D Sbjct: 101 LLIDVVTHSVTGVTNELSDMIEKLPKDEQKRILNAVRALVD 141 >gi|223983799|ref|ZP_03633967.1| hypothetical protein HOLDEFILI_01248 [Holdemania filiformis DSM 12042] gi|223964238|gb|EEF68582.1| hypothetical protein HOLDEFILI_01248 [Holdemania filiformis DSM 12042] Length = 83 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 21/65 (32%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G+ QE+L L ++ Q + E G I+ + I F Sbjct: 19 NRLEALRKARGIKQEELAAALEVSRQTIGSLENGRYNPSILLAFKIARYFDVSIEEVFIY 78 Query: 77 SPTVC 81 Sbjct: 79 EEESK 83 >gi|212711629|ref|ZP_03319757.1| hypothetical protein PROVALCAL_02704 [Providencia alcalifaciens DSM 30120] gi|212685731|gb|EEB45259.1| hypothetical protein PROVALCAL_02704 [Providencia alcalifaciens DSM 30120] Length = 75 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 38/68 (55%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +G +I R + G++ +KL + +G++ QQ +YE+GVNR+ RL + + + Sbjct: 7 ISKMIGSKIIYYRKMNGVTLQKLADTIGVSKQQQSRYERGVNRINLDRLAQYANYFDIDL 66 Query: 71 SFFFDVSP 78 + D++ Sbjct: 67 NRLLDIND 74 >gi|160897745|ref|YP_001563327.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160363329|gb|ABX34942.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 131 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 29/80 (36%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + G +R R G+SQE L I + K E+G + + I+ L Sbjct: 48 DIARAFGAAVRSLRNERGISQESLANLADIERSHMGKVERGEHMPTLVIVFKIARGLGCG 107 Query: 70 ISFFFDVSPTVCSDISSEEN 89 + + V S +++ Sbjct: 108 TAEVMGRADEVLSAGTTQAK 127 >gi|118471236|ref|YP_885533.1| transcription regulator [Mycobacterium smegmatis str. MC2 155] gi|118172523|gb|ABK73419.1| transcription regulator [Mycobacterium smegmatis str. MC2 155] Length = 189 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 24/60 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R GMS + +T + E+G+ V L I + L I F+ Sbjct: 5 GARLRQFRRERGMSLTDVAAKAEVTKGFLSLAERGMTNVSVPVLMRICDALGIGIGDLFE 64 >gi|90414720|ref|ZP_01222690.1| putative transcriptional regulator [Photobacterium profundum 3TCK] gi|90324165|gb|EAS40743.1| putative transcriptional regulator [Photobacterium profundum 3TCK] Length = 102 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G+SQ++LG LG+ + YEKG + + L+ I++ L P+S+F Sbjct: 10 RLKESRKTAGISQKELGIRLGMDPSSASGRMNHYEKGRHMPDIATLRRIADELGVPLSYF 69 Query: 74 FDVSPTVCS 82 F S Sbjct: 70 FCDSDNSAK 78 >gi|323174632|gb|EFZ60253.1| helix-turn-helix family protein [Escherichia coli LT-68] Length = 109 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 33/82 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + R+R +R G++ +L L + + + ++E G S L ++ +L Sbjct: 7 NSAINNRLRTQREACGLTTAELARLLDLDEEVIIQWESGEYEPTISMLIPLANILGCDPM 66 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 + + T SEE + Sbjct: 67 WLLTGAVTPPVQPKSEEQQHHN 88 >gi|226946801|ref|YP_002801874.1| Cupin, RmlC-type protein [Azotobacter vinelandii DJ] gi|226721728|gb|ACO80899.1| Cupin, RmlC-type protein [Azotobacter vinelandii DJ] Length = 182 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 37/103 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLME 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 FF + + + L + D + Sbjct: 61 FFSLDLEAEASAPVVYRAAEQAELSRGLLSMRLIGKDHPDRAL 103 >gi|300936711|ref|ZP_07151612.1| helix-turn-helix protein [Escherichia coli MS 21-1] gi|300458170|gb|EFK21663.1| helix-turn-helix protein [Escherichia coli MS 21-1] Length = 133 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 13/124 (10%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI G SQ +L +G+T Q VQ++ G AS L + EV P+ +F Sbjct: 11 RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKATPKASSLDKLVEVTGHPLHWFL--- 67 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 + + + P +L + F + ++ K + Sbjct: 68 --LPPEEGEQIFTPDTMKIGPRQRELLQAFSAFPEEDQ--------EKMLQEIKDKKKSM 117 Query: 138 EECM 141 EE + Sbjct: 118 EETI 121 >gi|322435619|ref|YP_004217831.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321163346|gb|ADW69051.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 110 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 1/99 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R G+S +KL GI Q ++YE+G + + L I+ VL+ S Sbjct: 12 LGERIKAARKQRGISNKKLIIDYGIHDSQWRRYERGGG-ISFASLLRIASVLDMTPSDLL 70 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 P + + +P +L + +Q+D Sbjct: 71 QGIPLPDWKEPTVLRETKEVPRSPRPSELAKRQLQVDRE 109 >gi|283769302|ref|ZP_06342202.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104078|gb|EFC05461.1| DNA-binding protein [Bulleidia extructa W1219] Length = 685 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 8/82 (9%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K PN ++R R LG +Q ++ L I+ + +E G + S++Q ++ Sbjct: 3 NKFPN--------KLRDLRKSLGYAQGEMASRLDISVKDYMNWENGNSLPAFSQIQKMAI 54 Query: 65 VLESPISFFFDVSPTVCSDISS 86 + P+ D + D+ Sbjct: 55 LFNIPVELLMDNRKEISQDLLD 76 >gi|251789530|ref|YP_003004251.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247538151|gb|ACT06772.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 128 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 34/67 (50%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P +G RI L R L ++Q++L E LGI Q + YE G +V AS L ++ +L Sbjct: 18 PFFKELGARIALARKELQLTQQQLAEQLGIAQQTMAHYEGGRLKVSASLLPQLATILNLS 77 Query: 70 ISFFFDV 76 + + Sbjct: 78 LDELLGL 84 >gi|218288753|ref|ZP_03493016.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218241111|gb|EED08287.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 82 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 33/75 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R+R R + G+S +L E G++ + E G A++L I+E L +S Sbjct: 3 ELAQRLRYYRKLRGLSVRELAERAGVSVSYIYAIESGARGSNAAKLGLIAEALGVSLSDL 62 Query: 74 FDVSPTVCSDISSEE 88 + + + + Sbjct: 63 WGDARPEKGGVPRDP 77 >gi|182419849|ref|ZP_02951089.1| putative phage repressor [Clostridium butyricum 5521] gi|237666894|ref|ZP_04526879.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376397|gb|EDT73979.1| putative phage repressor [Clostridium butyricum 5521] gi|237658093|gb|EEP55648.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 156 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 5/124 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RIR R ++Q +L + + ++ ++ YE V L+ IS L IS Sbjct: 1 MTIGARIRTSRKKANLTQAELAKLIDVSPSSIRMYETNKRNVSLEILKKISTALNISISD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 IS + + + + + I+ I+ R+I ++ Sbjct: 61 LIGYDNVDKDYISINTSKNSNTPKSNSFTRYDYARKLIESYN-----IDFERTINQNDPS 115 Query: 133 YRTI 136 T+ Sbjct: 116 NNTL 119 >gi|50842706|ref|YP_055933.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes KPA171202] gi|50840308|gb|AAT82975.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes KPA171202] gi|332675629|gb|AEE72445.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes 266] Length = 548 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ IR R GM+Q +L E L + + + E G + + I+E LESPI Sbjct: 49 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 104 >gi|15800839|ref|NP_286855.1| DicA, regulator of DicB; encoded within cryptic prophage CP-933M [Escherichia coli O157:H7 EDL933] gi|254792181|ref|YP_003077018.1| DicA-like protein, regulator of DicB [Escherichia coli O157:H7 str. TW14359] gi|12514168|gb|AAG55466.1|AE005287_13 similar to DicA, regulator of DicB; encoded within cryptic prophage CP-933M [Escherichia coli O157:H7 str. EDL933] gi|254591581|gb|ACT70942.1| DicA-like protein, regulator of DicB [Escherichia coli O157:H7 str. TW14359] Length = 132 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 13/124 (10%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI G SQ +L +G+T Q VQ++ G AS L + EV P+ +F Sbjct: 10 RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKATPKASSLDKLVEVSGHPLHWFL--- 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 + + + P +L + F + ++ K + Sbjct: 67 --LPPEECEQIFTPDTMKIGPRQRELLQAFSAFPEEDQ--------EKMLQEIKDKKKSM 116 Query: 138 EECM 141 EE + Sbjct: 117 EETI 120 >gi|116617488|ref|YP_817859.1| transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096335|gb|ABJ61486.1| Predicted transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 68 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R ++Q +L L +T Q V EKG I+E + PI F Sbjct: 3 NRIQELRKSRKLTQAELAAELEVTRQTVISLEKGKYNASLFLAHRIAEFFDLPIEDVF 60 >gi|317403434|gb|EFV83946.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 225 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 32/76 (42%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + VD+ +G+++R R G S + + G++ + + E+G++ L ++ Sbjct: 27 SAVDMWLGQQLRQLRKQHGRSLADVAQACGMSLGLLSQIERGLSSASVKTLHQLAREFGV 86 Query: 69 PISFFFDVSPTVCSDI 84 ++ + + Sbjct: 87 SVNTLLRNAEHTEGED 102 >gi|319646699|ref|ZP_08000928.1| hypothetical protein HMPREF1012_01965 [Bacillus sp. BT1B_CT2] gi|317391287|gb|EFV72085.1| hypothetical protein HMPREF1012_01965 [Bacillus sp. BT1B_CT2] Length = 183 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 33/83 (39%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ V + I+ R + S ++L G++ + + EKG + + L I+ L+ Sbjct: 2 NSIEKQVAENIKRLRKVRNYSLDQLSSMTGVSKGMLAQIEKGSSSPTITTLWKIANGLQV 61 Query: 69 PISFFFDVSPTVCSDISSEENNV 91 + + + + E Sbjct: 62 SFTSLAEKPAGEPTVVRKHEKTP 84 >gi|312891075|ref|ZP_07750598.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311296383|gb|EFQ73529.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 116 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 10/124 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+L R G SQ LGI+ K E G+ + SRL +I+++L+ I Sbjct: 3 ELGKNIKLLRHEKGWSQSDFAAKLGISVPAFSKIENGLTDLHLSRLNNIAKILDMSIVEL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 +V ++ ++E ++ + I LN +++++I L I K Sbjct: 63 LSFQKSVRNNDANELDSAKESIKNYMEQILN----------LQKQVILLHEEIRKLSKAP 112 Query: 134 RTIE 137 + + Sbjct: 113 KDVL 116 >gi|295100170|emb|CBK89259.1| Predicted transcriptional regulators [Eubacterium cylindroides T2-87] Length = 117 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 27/64 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I R +SQE LG+ +G+T Q + +E +L+ +S+ Sbjct: 1 MLGENILRLRKGANLSQEALGDIIGVTRQMISNWELEETAPNPEQLKLLSKAFNVSADDL 60 Query: 74 FDVS 77 + Sbjct: 61 LNND 64 >gi|295087511|emb|CBK69034.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 74 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + I G+R+R R MSQE+L + + + E+ V ++ I++ LE Sbjct: 2 SEILIKFGERVRQLRKEKRMSQEELADKANLHRTYIGMIERAEKNVTLINIEKIAKALEV 61 Query: 69 PISFFF 74 I FF Sbjct: 62 SIQDFF 67 >gi|307726765|ref|YP_003909978.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1003] gi|307587290|gb|ADN60687.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1003] Length = 212 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 29/78 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 Query: 75 DVSPTVCSDISSEENNVM 92 T + + + + Sbjct: 95 AAQKTPEAIAVAGPHEIP 112 >gi|239909020|ref|YP_002955762.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] gi|239798887|dbj|BAH77876.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus RS-1] Length = 1199 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 1/88 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R + G++Q +L E G++ + K E+G + + S L + F Sbjct: 11 GRRLRHVRRLCGLTQARLAERSGVSLEHCNKIERGAAAPSLAVIHAFSRALGVEPATLF- 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQL 103 + +D + E + GL L Sbjct: 70 LPERDAADEAGEAGIDWAAVHGRQGLFL 97 >gi|225019346|ref|ZP_03708538.1| hypothetical protein CLOSTMETH_03299 [Clostridium methylpentosum DSM 5476] gi|224947977|gb|EEG29186.1| hypothetical protein CLOSTMETH_03299 [Clostridium methylpentosum DSM 5476] Length = 112 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 7/107 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +QE + LG + + YE + L +++ + + + Sbjct: 8 NRLKELRKESSYTQEAIAAKLGTAQENISNYEIEKVPIPVDLLIQFAQLYHTSTDYILGL 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 S + D +L + ++ K R+ I++L+ Sbjct: 68 SSERQIVKFDADQWEQD------VAKLIELYQRLPKSK-RKVILDLL 107 >gi|254502131|ref|ZP_05114282.1| conserved domain protein [Labrenzia alexandrii DFL-11] gi|222438202|gb|EEE44881.1| conserved domain protein [Labrenzia alexandrii DFL-11] Length = 484 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 4/127 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R G+SQ + + LG++ + + E V AS L I V + ++ F + Sbjct: 13 GHTLRQVRADTGLSQVEFAKKLGLSTPYINQIENNNRPVTASVLLAIYRVFGTDLAAFEE 72 Query: 76 VSPTVCSDISSEENNVMDFISTPDG-LQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + E F T L+ + + + I+++ ++ + +K Sbjct: 73 NDLDRMTQDLEEIFADTRFHGTRISKQDLHELATRAPEAA--RAIMDMYGTMRAYHEKD- 129 Query: 135 TIEEECM 141 E++ + Sbjct: 130 AGEDDLL 136 >gi|153805880|ref|ZP_01958548.1| hypothetical protein BACCAC_00119 [Bacteroides caccae ATCC 43185] gi|149130557|gb|EDM21763.1| hypothetical protein BACCAC_00119 [Bacteroides caccae ATCC 43185] Length = 191 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R ++ E+L + G+ +Q+++ E ++ + L I+ VL + Sbjct: 5 KIVGEKIKSLREDKSITIEELAQRSGLAMEQIERIENNIDIPSLAPLIKIARVLGVRLGT 64 Query: 73 FFDVSPT------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F D + + + I + ++ + D + II+++ Sbjct: 65 FLDDQDEVGPVVCRKKEAKDAISFSNNAIHSRKHMEYHSLSKSKADRHMEPFIIDVM 121 >gi|229541963|ref|ZP_04431023.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] gi|229326383|gb|EEN92058.1| transcriptional regulator, XRE family [Bacillus coagulans 36D1] Length = 71 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I+L R +G++QE+L + L IT Q V E I++ + F + Sbjct: 4 NNIKLLRKEIGITQEQLAKELKITRQTVITIENHRYNPSLELALKIAKFFGKNVEEIFFL 63 Query: 77 SPTVCSDI 84 S + Sbjct: 64 EEGEDSAV 71 >gi|30265200|ref|NP_847577.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47778398|ref|YP_022067.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|30259877|gb|AAP29063.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47552103|gb|AAT34542.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] Length = 70 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 10 NKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 69 Query: 77 S 77 Sbjct: 70 E 70 >gi|148548133|ref|YP_001268235.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148512191|gb|ABQ79051.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 114 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 51/113 (45%), Gaps = 2/113 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K P+P ++G+++ R+ ++Q ++GE L I+ + V + E+G + S+L ++++ Sbjct: 4 KEPSP--HHIGRQLAKYRLARHLTQTQVGEHLQISGEAVSRLERGFVELSVSKLLQLADL 61 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 P D+ + N+++ + D + + ++K Sbjct: 62 YGCPADELLLAISPRPQDLGVQINSIIKELDEADKQFALESLKTLANHLAQRK 114 >gi|69246897|ref|ZP_00604172.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257879186|ref|ZP_05658839.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257881995|ref|ZP_05661648.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257890016|ref|ZP_05669669.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|258615585|ref|ZP_05713355.1| transcriptional regulator, xre family protein [Enterococcus faecium DO] gi|260560167|ref|ZP_05832344.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|293559524|ref|ZP_06676061.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1162] gi|294621805|ref|ZP_06700963.1| transcriptional regulator, xre family, putative [Enterococcus faecium U0317] gi|314947447|ref|ZP_07850866.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|68195026|gb|EAN09490.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|257813414|gb|EEV42172.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817653|gb|EEV44981.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257826376|gb|EEV53002.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260073734|gb|EEW62059.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|291598588|gb|EFF29647.1| transcriptional regulator, xre family, putative [Enterococcus faecium U0317] gi|291606586|gb|EFF35983.1| transcriptional regulator, xre family, putative [Enterococcus faecium E1162] gi|313646105|gb|EFS10685.1| helix-turn-helix protein [Enterococcus faecium TX0082] Length = 221 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 28/57 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G++IR R ++Q++LGE +G++ + + +E L + L PI F Sbjct: 4 GEKIRTYRRNCKLTQKELGEKIGVSDKTISSWENSRTMPDLEMLSLLHHTLGLPIDF 60 >gi|325066629|ref|ZP_08125302.1| transcriptional regulator [Actinomyces oris K20] Length = 62 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G++Q +LG LG++ Q V EKG I+ E+ + F Sbjct: 5 VRGLREARGLTQAQLGAALGVSRQSVNSIEKGKYDPSLPLAIAIARYFETTVEEIF 60 >gi|297560849|ref|YP_003679823.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845297|gb|ADH67317.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 198 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 36/81 (44%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + +D V +RIR R+ G S E+L + ++ + + E G R+ +L Sbjct: 1 MMPMTQEDGELDGLVRRRIRALRVAQGWSLEELAKRAHLSQSSLSRIENGRRRLALDQLV 60 Query: 61 HISEVLESPISFFFDVSPTVC 81 ++ L++ + + + Sbjct: 61 TLARALDTTLDQLVETADDDV 81 >gi|294101545|ref|YP_003553403.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] gi|293616525|gb|ADE56679.1| transcriptional regulator, XRE family [Aminobacterium colombiense DSM 12261] Length = 123 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 32/77 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI+ R ++Q+ L + ++ +Q E L +++ L+ I+ Sbjct: 1 MSLGIRIKTLRKAARLTQQALADKTDVSRIYIQALESNRRLPSMKLLSKLAQALDVEITD 60 Query: 73 FFDVSPTVCSDISSEEN 89 +P+ S E Sbjct: 61 LVKGTPSDESGRIHLEE 77 >gi|260889935|ref|ZP_05901198.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] gi|260860541|gb|EEX75041.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] Length = 183 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R ++Q+ L + + I + KYE+G N+ S L I E + +F Sbjct: 15 LKKLRTEKRLTQKALADKINIPVSMISKYEQGTNKPSFSYLSKICRFFEVELDYFL 70 >gi|320007252|gb|ADW02102.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 33331] Length = 204 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 26/72 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R+R R G++ E G++ + + E G + L ++ V + +S Sbjct: 15 IAPRLRDLRRNRGLTLEAAAGRAGLSPAHLSRLETGRRQPSLPMLLGLARVYGTTVSELL 74 Query: 75 DVSPTVCSDISS 86 P I Sbjct: 75 GEMPPERDAIVR 86 >gi|258406641|ref|YP_003199382.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] gi|257798868|gb|ACV69804.1| transcriptional regulator, XRE family [Desulfohalobium retbaense DSM 5692] Length = 76 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ RR LG+SQEKL + G + E+G L I++ LE+ +S Sbjct: 7 ELGQEIKSRRKQLGLSQEKLADKCGFDRTYISMVERGKRNPSLLNLLKIAKGLEASVSEL 66 Query: 74 FD 75 + Sbjct: 67 TE 68 >gi|149919002|ref|ZP_01907487.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149820155|gb|EDM79574.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 108 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R G++QE L E ++ V++ E L +++ L P Sbjct: 8 ELGERLRTLRKRRGLTQEALAEAAEVSVDSVRRLENAAFSPSFDTLTKLAKGLNVPKVAL 67 Query: 74 FDVSPTVCSDIS 85 D++ Sbjct: 68 ITDHYDEEDDLA 79 >gi|30023206|ref|NP_834837.1| PbsX family transcriptional regulator [Bacillus cereus ATCC 14579] gi|229050832|ref|ZP_04194384.1| hypothetical protein bcere0027_47870 [Bacillus cereus AH676] gi|229130416|ref|ZP_04259374.1| hypothetical protein bcere0015_48510 [Bacillus cereus BDRD-Cer4] gi|29898766|gb|AAP12038.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC 14579] gi|228653115|gb|EEL08995.1| hypothetical protein bcere0015_48510 [Bacillus cereus BDRD-Cer4] gi|228722488|gb|EEL73881.1| hypothetical protein bcere0027_47870 [Bacillus cereus AH676] Length = 65 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 5 NKIKELRKQNHITQVEMAKVMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|16802370|ref|NP_463855.1| hypothetical protein lmo0325 [Listeria monocytogenes EGD-e] gi|224502382|ref|ZP_03670689.1| hypothetical protein LmonFR_07654 [Listeria monocytogenes FSL R2-561] gi|16409689|emb|CAD00852.1| lmo0325 [Listeria monocytogenes EGD-e] Length = 300 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 11/113 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R+ G++Q+++ + I+ +EKG + + S + I + + P+ FF Sbjct: 5 GELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFF- 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY--------FIQIDDVKVRQKII 120 + +++ +DF+ + + + +VR+ I+ Sbjct: 63 -FIYRDFSSTEDDSFWIDFVELSGKNDVVGMQALLDKITLERTEQSEVRKAIL 114 >gi|323488389|ref|ZP_08093636.1| DNA-binding protein [Planococcus donghaensis MPA1U2] gi|323397896|gb|EGA90695.1| DNA-binding protein [Planococcus donghaensis MPA1U2] Length = 67 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R G +QE+L E LG++ Q + E G + I+ + + I F Sbjct: 3 HRIKELRTSFGYTQEQLSEKLGVSRQTIISIENGRYKPSLELAYKIATLFQLRIEDVF 60 >gi|307329641|ref|ZP_07608799.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306884699|gb|EFN15727.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 27/79 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V R+R R G++ E +G++ + + E G + L ++ + +S Sbjct: 31 VAPRLRDLRRRSGLTLEAAAHRVGLSPAHLSRLETGRRQPSLPMLLTLARTYGTTVSDLL 90 Query: 75 DVSPTVCSDISSEENNVMD 93 + + + Sbjct: 91 GEETSERDPVVRADRMEAQ 109 >gi|295104278|emb|CBL01822.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 120 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 28/73 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R+ GM+QE+L +G+ + E G + L I L+ Sbjct: 7 IGKRIRACRLAKGMTQEQLANEVGVVVTHISHIETGNSVPSLKTLIDIINALDCSADELL 66 Query: 75 DVSPTVCSDISSE 87 + + Sbjct: 67 CIEIKKAKPVFDS 79 >gi|288871375|ref|ZP_06117348.2| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] gi|288863735|gb|EFC96033.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] Length = 195 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 5/109 (4%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P++ V K I+ R +S E+L + ++ + + E+G S L IS ++ Sbjct: 14 DPMNTIVAKNIKRLREEKKLSMEELSKLSSVSKSMLAQIERGEGNPTLSTLWKISNGMKV 73 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 P V P +I + + + D + R+ Sbjct: 74 PFDAL-TVRPERIYEIVKTSEVQPLLEDSGK----VKNYSIFPDDENRR 117 >gi|302866468|ref|YP_003835105.1| Cupin 2 conserved barrel domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315502877|ref|YP_004081764.1| cupin 2 conserved barrel domain protein [Micromonospora sp. L5] gi|302569327|gb|ADL45529.1| Cupin 2 conserved barrel domain protein [Micromonospora aurantiaca ATCC 27029] gi|315409496|gb|ADU07613.1| Cupin 2 conserved barrel domain protein [Micromonospora sp. L5] Length = 214 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 35/78 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G++ L G++ + + E+G++ +G + L +++ L+ ++ FF Sbjct: 28 VGGRIRRYRKERGLTLRGLASRSGLSIGFLSQVERGISSIGLTALGSVAKALDRSVADFF 87 Query: 75 DVSPTVCSDISSEENNVM 92 D S Sbjct: 88 DAGTAAPDSTVSSLPRHF 105 >gi|260462394|ref|ZP_05810602.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259031888|gb|EEW33156.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 205 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++L R G++ + L + + K E G L + EVL + I + F Sbjct: 24 LGTRLKLSRQTRGLTLKALATSANCSESLLSKVENGKVSPSLPMLHRLVEVLGTNIGWMF 83 Query: 75 DVSPTVCS 82 + S Sbjct: 84 EESDGEEG 91 >gi|315499432|ref|YP_004088235.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315417444|gb|ADU14084.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 93 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 1/70 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ-KYEKGVNRVGASRLQHISEVLES 68 V +G + R +SQE+L + + Q E G A L I+ L Sbjct: 2 DVQALIGWNVSRLRKKAELSQEELALRVEVVAQTYISNLEAGKCNPTAVTLYLIARALSV 61 Query: 69 PISFFFDVSP 78 +S F Sbjct: 62 NVSELFATDG 71 >gi|237734694|ref|ZP_04565175.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382022|gb|EEO32113.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 142 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 42/118 (35%), Gaps = 8/118 (6%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R +QE++ + +G++ Q V K+E G + ++++ I + Sbjct: 9 LRKHYQYTQEEIAQQVGVSRQSVAKWESGESLPDIDSCMALAKIYNVTIDNLINHDEDDA 68 Query: 82 SDISSEENNVMDFIST---PDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + T + + + +I + KI+ I+ E++ I Sbjct: 69 GIVIPPKGKHFFGAVTVGERGQIVIPQEARRIFKISAGDKIL-----ILGDEERGLAI 121 >gi|237748951|ref|ZP_04579431.1| helix-turn-helix domain-containing protein [Oxalobacter formigenes OXCC13] gi|229380313|gb|EEO30404.1| helix-turn-helix domain-containing protein [Oxalobacter formigenes OXCC13] Length = 121 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 2/112 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NK+ + +G+ I +R G++QE + E L I + V + E+G RL Sbjct: 1 MQKNKEK--AIAKAIGRAIAKKRTEKGLTQEDVAEKLNIGNEAVSRIERGTVIPNVVRLV 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 ++E+ E S D + + + ++ D L + + Sbjct: 59 ELAEIFECGTDELLIESRLRSMDHAKYLYELFERLNEQDKALLLHLMTTLAE 110 >gi|256827327|ref|YP_003151286.1| putative transcriptional regulator [Cryptobacterium curtum DSM 15641] gi|256583470|gb|ACU94604.1| predicted transcriptional regulator [Cryptobacterium curtum DSM 15641] Length = 192 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 8/79 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + +G +I R +SQ+ L + G + + E G + L Sbjct: 1 MSDENR--------LGHKIVTLREAHHLSQQDLADRCGCDVSAIAELEAGEVPPSLAPLI 52 Query: 61 HISEVLESPISFFFDVSPT 79 I+ L + D + Sbjct: 53 KITRALGVRLGTLMDDDES 71 >gi|229148382|ref|ZP_04276660.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|228635082|gb|EEK91634.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] Length = 79 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R G++Q++L + +T Q + E I++ L+ + F Sbjct: 18 SKIKIARTEKGLTQQELAVLVNVTRQTIGLIELNKYNPSLKLCIDIAKSLDKTLDELFWE 77 Query: 77 SP 78 Sbjct: 78 EK 79 >gi|229157978|ref|ZP_04286049.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] gi|228625431|gb|EEK82187.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 4342] Length = 181 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + E + ++ Sbjct: 61 LLLEQKDRLKVVKKVERKYSVYGKDEQRIEHV 92 >gi|225419983|ref|ZP_03762286.1| hypothetical protein CLOSTASPAR_06324 [Clostridium asparagiforme DSM 15981] gi|225041375|gb|EEG51621.1| hypothetical protein CLOSTASPAR_06324 [Clostridium asparagiforme DSM 15981] Length = 151 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 6/125 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I +G RI+ R MSQ++L + G + + K E G+N V S+++ I+E L + Sbjct: 14 IEIGNRIKQLRTEKDMSQDELAKRSGYGSRSTINKIELGINDVPQSKIKAIAEALGVSVG 73 Query: 72 FFF---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF--IQIDDVKVRQKIIELVRSI 126 + + + +E N+++ I G + F D + +I ++ + Sbjct: 74 TLLCWDEFDESHNTIKIQKEINLIEQIEQQHGKTASEAFGMYVQLDSDDQGEIRGEMKQM 133 Query: 127 VSSEK 131 + +EK Sbjct: 134 LKAEK 138 >gi|86140990|ref|ZP_01059549.1| helix-turn-helix family protein [Leeuwenhoekiella blandensis MED217] gi|85832932|gb|EAQ51381.1| helix-turn-helix family protein [Leeuwenhoekiella blandensis MED217] Length = 66 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R L M+Q L + + ++ Q V EKG ++ V I F Sbjct: 3 NNIKELRAALKMTQSDLAQQIEVSRQTVNAIEKGKFDPSLPTAFRLAAVFNCSIEELF 60 >gi|30263282|ref|NP_845659.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47528657|ref|YP_020006.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186132|ref|YP_029384.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|65320613|ref|ZP_00393572.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165869231|ref|ZP_02213891.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167631940|ref|ZP_02390267.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167637201|ref|ZP_02395481.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170685020|ref|ZP_02876245.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170705153|ref|ZP_02895618.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650111|ref|ZP_02933112.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564884|ref|ZP_03017805.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227813847|ref|YP_002813856.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229602441|ref|YP_002867542.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254685897|ref|ZP_05149756.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254738367|ref|ZP_05196070.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254742466|ref|ZP_05200151.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254752683|ref|ZP_05204719.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254761198|ref|ZP_05213222.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30257916|gb|AAP27145.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47503805|gb|AAT32481.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180059|gb|AAT55435.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|164715957|gb|EDR21474.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167514708|gb|EDR90074.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167532238|gb|EDR94874.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170130008|gb|EDS98870.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170671280|gb|EDT22018.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084063|gb|EDT69122.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564201|gb|EDV18165.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227004554|gb|ACP14297.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229266849|gb|ACQ48486.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 374 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 P + + + + + ++ + + + ++ I+ + Sbjct: 64 LISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMECRKIIKKYYSCFPLLIQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDTDRRIEILEEAM 141 >gi|332655408|ref|ZP_08421147.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|332515703|gb|EGJ45314.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 166 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 29/66 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI+ R G++QE+L + +G++ V+ YE G+ + + + + + Sbjct: 2 GQRIQELRKDAGLTQEQLAQRIGVSMAAVRNYENGLREPNSKAMAALERFFKVSGEYLRG 61 Query: 76 VSPTVC 81 Sbjct: 62 DIDRET 67 >gi|332533845|ref|ZP_08409701.1| regulatory protein Cro [Pseudoalteromonas haloplanktis ANT/505] gi|332036776|gb|EGI73239.1| regulatory protein Cro [Pseudoalteromonas haloplanktis ANT/505] Length = 206 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+RI+ RR+ LG++Q L E GI Q +QK E G + L+ +++ L+ F Sbjct: 1 MSVGERIKKRRVELGLTQANLAELAGIIQQSLQKIESGSTK-NPRNLKALADALDCTPEF 59 Query: 73 FFDVSPTVCSDISS 86 + S Sbjct: 60 LQFGIAESINSNVS 73 >gi|239625605|ref|ZP_04668636.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA] gi|239519835|gb|EEQ59701.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA] Length = 190 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G IR R ++ ++L E G++ + + E+ S L+ I+ + P+ Sbjct: 1 MLGTNIREYRKNKKLTIKELSERTGLSIGYISQVEREEAEPSLSSLRKIAREFDVPVYVL 60 Query: 74 FDV 76 D Sbjct: 61 MDD 63 >gi|229092281|ref|ZP_04223456.1| hypothetical protein bcere0021_30650 [Bacillus cereus Rock3-42] gi|228691098|gb|EEL44864.1| hypothetical protein bcere0021_30650 [Bacillus cereus Rock3-42] Length = 374 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 P + + + + + ++ + + + ++ I+ + Sbjct: 64 LISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMECRKIIKKYYSCFPLLIQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDTDRRIEILEEAM 141 >gi|226305590|ref|YP_002765550.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229489625|ref|ZP_04383488.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] gi|226184707|dbj|BAH32811.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|229323722|gb|EEN89480.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] Length = 187 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/114 (9%), Positives = 36/114 (31%), Gaps = 3/114 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +++ + +G +R R G++ ++ G++ + + E G L Sbjct: 1 MDDDQR---AIATAIGAAVRTARKEAGLTLREVAVKSGLSQPFLSQTENGHAVPSVMNLH 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +++ L + S + ++ ++ + + Sbjct: 58 RLAQSLGTTAHSLLAQGERTPSSLVRAGEGRTFELAHDSVIRFCSTGSRTMEPN 111 >gi|188025844|ref|ZP_02960023.2| hypothetical protein PROSTU_01924 [Providencia stuartii ATCC 25827] gi|188020707|gb|EDU58747.1| hypothetical protein PROSTU_01924 [Providencia stuartii ATCC 25827] Length = 116 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHI 62 N K N + VG ++ R+ G++ +L + GI QQ+ +YE+G+NR+G L Sbjct: 9 NMKSTNSISKLVGFHLKKLRIQSGLTAFQLAKQAGIKSEQQLYRYERGINRIGIDELISS 68 Query: 63 SEVLESPISFFFDV--SPTVCSDISSEENNVMDFISTP 98 +VL+ I FF++ ++ + ++ + ++ T Sbjct: 69 LQVLDIDIGEFFELITKESLVENELTDIDKEKQYLDTQ 106 >gi|168183318|ref|ZP_02617982.1| cupin domain protein [Clostridium botulinum Bf] gi|237793956|ref|YP_002861508.1| cupin domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182673516|gb|EDT85477.1| cupin domain protein [Clostridium botulinum Bf] gi|229263990|gb|ACQ55023.1| cupin domain protein [Clostridium botulinum Ba4 str. 657] Length = 183 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R +S +L E I+ + + EKG + L I+ L+ P Sbjct: 3 INSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKGDTNPTINTLWKIANGLKVPY 62 Query: 71 SFFFDVSP 78 + + Sbjct: 63 TLLLEQKE 70 >gi|56698522|ref|YP_168898.1| anaerobic benzoate catabolism transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56680259|gb|AAV96925.1| DNA-binding/shikimate kinase domain protein [Ruegeria pomeroyi DSS-3] Length = 305 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 2/110 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R+R R G+ + L E G++ + + + E G + LQ ++ L+ I + Sbjct: 31 VGERVRAARQRRGIPRRVLSEISGVSPRYLAQLEAGEGNISIGLLQRVATALDHRIEWLV 90 Query: 75 DVSPTVCSDISSEENNV--MDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 SD + + + L+L + R ++ L Sbjct: 91 GEDDPWSSDAMRVADLYRVAGMDTRAEVLRLLSPAPSLAARAGRICLVGL 140 >gi|15640206|ref|NP_229833.1| transcriptional regulator, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|229509387|ref|ZP_04398870.1| hypothetical protein VCE_000787 [Vibrio cholerae B33] gi|229516334|ref|ZP_04405782.1| hypothetical protein VCC_000348 [Vibrio cholerae RC9] gi|229605680|ref|YP_002876384.1| hypothetical protein VCD_000628 [Vibrio cholerae MJ-1236] gi|229606525|ref|YP_002877173.1| hypothetical protein VCD_001434 [Vibrio cholerae MJ-1236] gi|254851305|ref|ZP_05240655.1| transcriptional regulator [Vibrio cholerae MO10] gi|9654580|gb|AAF93352.1| transcriptional regulator, putative [Vibrio cholerae O1 biovar El Tor str. N16961] gi|229346760|gb|EEO11730.1| hypothetical protein VCC_000348 [Vibrio cholerae RC9] gi|229353702|gb|EEO18639.1| hypothetical protein VCE_000787 [Vibrio cholerae B33] gi|229369180|gb|ACQ59603.1| hypothetical protein VCD_001434 [Vibrio cholerae MJ-1236] gi|229372166|gb|ACQ62588.1| hypothetical protein VCD_000628 [Vibrio cholerae MJ-1236] gi|254847010|gb|EET25424.1| transcriptional regulator [Vibrio cholerae MO10] Length = 102 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ+ LG +G+ + +YEKG + L+ I++ L P+++F Sbjct: 10 RLKEARKKAKLSQKALGVRIGMDESSASPRMNQYEKGKHTPDVQTLKLIADELGVPLNYF 69 Query: 74 FDVSPTVCS 82 F Sbjct: 70 FCEDDESAE 78 >gi|325912400|ref|ZP_08174795.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|325475742|gb|EGC78913.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] Length = 109 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 37/87 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R++ ++Q++L G+T ++ YE G +LQ ISE + IS + Sbjct: 4 GKKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISETFDCDISALIN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 P +I + + Sbjct: 64 HEPNSIFEIMHIIFDYEKDMKFRPSAD 90 >gi|322391684|ref|ZP_08065152.1| transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321145495|gb|EFX40888.1| transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 69 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R+ L M+Q L + +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVELDMTQSDLADAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 78 PTVC 81 Sbjct: 66 EDEK 69 >gi|291519985|emb|CBK75206.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4] Length = 122 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R+ R LG+++ + L ++ +YE G L+ I++ + +++ Sbjct: 6 IPQRLAQARENLGITKAEASRRLNLSKIGYGRYESGDRTPSIQTLEVIAQCFGTSVAYL- 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 T +D + + V+ +++P+ L + DD +R+ I ++ K+ Sbjct: 65 ----TGETDEINPDKVVITKMNSPELFNLILSVSECDDAFIRR-ISTYASQLLKDTKEDS 119 Query: 135 TI 136 Sbjct: 120 AP 121 >gi|283783004|ref|YP_003373758.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|298253579|ref|ZP_06977369.1| transcriptional regulator [Gardnerella vaginalis 5-1] gi|283441892|gb|ADB14358.1| DNA-binding protein [Gardnerella vaginalis 409-05] gi|297532346|gb|EFH71234.1| transcriptional regulator [Gardnerella vaginalis 5-1] Length = 67 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G++QE+L + L ++ Q V E G I++ I F Sbjct: 3 NRLEQIRREKGITQEELADALEVSRQTVGSLENGRYNPSIILAYKIAKYFNLTIEEIFIY 62 Query: 77 SPTVC 81 Sbjct: 63 EEDKK 67 >gi|257063253|ref|YP_003142925.1| hypothetical protein Shel_05170 [Slackia heliotrinireducens DSM 20476] gi|256790906|gb|ACV21576.1| uncharacterized conserved protein [Slackia heliotrinireducens DSM 20476] Length = 436 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 30/75 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G I R G++Q +L + +G+T + V K+E G ++ ++ +S + + Sbjct: 3 DYAFGNYIFHLRKQAGLTQAELAKLVGVTNKAVSKWEVGKSKPSVESVRKLSGLFHVSVD 62 Query: 72 FFFDVSPTVCSDISS 86 + Sbjct: 63 ELLRQRDAGRRAEIT 77 >gi|228921209|ref|ZP_04084538.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838424|gb|EEM83736.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 184 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 1/129 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF + T ++ N G D + ++ L+ SS + Sbjct: 63 NFF-LEDTNTEELVVRANQRKKITFPESGNVSYELLSPNLDGSLELALMNLLPQTASSMQ 121 Query: 132 KYRTIEEEC 140 EE Sbjct: 122 PVAHKGEEI 130 >gi|257053436|ref|YP_003131269.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] gi|256692199|gb|ACV12536.1| transcriptional regulator, XRE family [Halorhabdus utahensis DSM 12940] Length = 72 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ RR ++Q +L E +G+T Q + EKG I+ ++ + FD+ Sbjct: 7 IKERREDANLTQAELAEAVGVTRQTILYVEKGEYNPSLELAWRIAREFDTHVEEVFDLPE 66 Query: 79 TVCSDI 84 T Sbjct: 67 TTHEPE 72 >gi|225374973|ref|ZP_03752194.1| hypothetical protein ROSEINA2194_00596 [Roseburia inulinivorans DSM 16841] gi|225213163|gb|EEG95517.1| hypothetical protein ROSEINA2194_00596 [Roseburia inulinivorans DSM 16841] Length = 123 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 48/127 (37%), Gaps = 5/127 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +RI MSQ +L GI + ++K A L I + L+ Sbjct: 1 MIISERIFYIMEQKNMSQLELSRRTGIATSNISDWKKKKTNPKADCLLSICDALDITPEQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 ++ MD+ T +++ + + D + ++++ ++++ E Sbjct: 61 LLTGKGIDPEYKDTD----MDYEVTRSDIKILKQIHSLGDEQY-KRLLAYMKALKKLETM 115 Query: 133 YRTIEEE 139 +EE+ Sbjct: 116 ESIVEEQ 122 >gi|154504949|ref|ZP_02041687.1| hypothetical protein RUMGNA_02459 [Ruminococcus gnavus ATCC 29149] gi|153794832|gb|EDN77252.1| hypothetical protein RUMGNA_02459 [Ruminococcus gnavus ATCC 29149] Length = 248 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 35/75 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R G +Q++L E L ++ + + K+E+G++ + L+ ++++L ++ Sbjct: 13 GGFVAALRKEKGYTQKELAEKLFLSNKAISKWERGLSLPDIALLEPLADILGVTVAELLK 72 Query: 76 VSPTVCSDISSEENN 90 + E + Sbjct: 73 GERIHAALEPQEMDE 87 >gi|254360461|ref|ZP_04976610.1| possible LexA family repressor/S24 family protease [Mannheimia haemolytica PHL213] gi|153091001|gb|EDN73006.1| possible LexA family repressor/S24 family protease [Mannheimia haemolytica PHL213] Length = 218 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ RR L ++Q+ L L ++ V ++E + + + +S VL+ IS+ Sbjct: 6 LGDRIKSRRKELKLTQKDLATALKGVSHVAVSQWESSTTKPNSENILDLSTVLQCDISWL 65 Query: 74 FDVSPTV 80 + Sbjct: 66 LRGNGES 72 >gi|167645630|ref|YP_001683293.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167348060|gb|ABZ70795.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 64 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R SQ L + L ++ Q + E G I+ + PI F Sbjct: 3 NRLKVLRAERDWSQADLADRLEVSRQTINALETGKYDPSLPLAFKIARLFGLPIETIFQD 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|83589109|ref|YP_429118.1| XRE family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572023|gb|ABC18575.1| transcriptional regulator, XRE family [Moorella thermoacetica ATCC 39073] Length = 81 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 28/73 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R+ G++Q +L +G+T EKG I+ L P+ F Sbjct: 5 LRRVRLQAGLTQSELARLVGLTRASYTNIEKGHKNPSVGTALRIARALNRPVEELFADES 64 Query: 79 TVCSDISSEENNV 91 D+ SE + Sbjct: 65 PAVQDVKSEGRAM 77 >gi|47566166|ref|ZP_00237194.1| SinR protein [Bacillus cereus G9241] gi|228984453|ref|ZP_04144631.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229154947|ref|ZP_04283061.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 4342] gi|229195577|ref|ZP_04322343.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1293] gi|47556719|gb|EAL15050.1| SinR protein [Bacillus cereus G9241] gi|228587826|gb|EEK45878.1| HTH-type transcriptional regulator sinR [Bacillus cereus m1293] gi|228628505|gb|EEK85218.1| HTH-type transcriptional regulator sinR [Bacillus cereus ATCC 4342] gi|228775319|gb|EEM23707.1| HTH-type transcriptional regulator sinR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 107 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 2/96 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE-ENNVMDFISTPDGLQLNRYF 107 T + + SE V D +++ + R F Sbjct: 61 LLHDETTKENHLDSEWTQLVKDAMNSGVSKEQFREF 96 >gi|331086520|ref|ZP_08335599.1| hypothetical protein HMPREF0987_01902 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410578|gb|EGG90006.1| hypothetical protein HMPREF0987_01902 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 136 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 50/122 (40%), Gaps = 2/122 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFF 74 G++++ R G++Q +L + +G++ + V+ +E L ++++L IS+ Sbjct: 4 GEKVKNLRKNKGLNQTQLADAVGVSLRTVRGWEIEGRYPKKHDLYQKLADILSCDISYLM 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVRSIVSSEKKY 133 ++ S + N + Q F + + + ++ ++S+ K+ Sbjct: 64 TEEEAFITEASEQFGNRGAKQAQQILEQAAAMFAGGELSDEDKTAFMDEIQSLYLDSKRR 123 Query: 134 RT 135 Sbjct: 124 AK 125 >gi|329897117|ref|ZP_08271861.1| transcriptional regulator, XRE family [gamma proteobacterium IMCC3088] gi|328921409|gb|EGG28799.1| transcriptional regulator, XRE family [gamma proteobacterium IMCC3088] Length = 222 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 4/71 (5%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 ++PNP+ G+R+R R + + + GI+ + K E G + S + + Sbjct: 16 EADRLPNPI----GRRLRQLRKEQDWTLADVSKRTGISVGTLSKLEHGKTDLNFSSVNKL 71 Query: 63 SEVLESPISFF 73 + L ++ Sbjct: 72 ATGLGLAVTDL 82 >gi|328880928|emb|CCA54167.1| putative transcriptional regulatory protein [Streptomyces venezuelae ATCC 10712] Length = 190 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/83 (12%), Positives = 30/83 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + ++ R G++ + L G++ + + E+ +++ L I+ Sbjct: 11 LARNLKRWRKERGLTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLL 70 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 D I + V + ++ Sbjct: 71 DYEQGPQVRIVPPDQAVRMWSTS 93 >gi|325068599|ref|ZP_08127272.1| transcriptional regulator, XRE family protein [Actinomyces oris K20] Length = 76 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D V RI + R +S+ +L E LG+ +Q V E+G I+ + P+ Sbjct: 5 DDFVHNRIAVLRADRRVSRRELAEALGVHYQTVGYLERGEYAPSLHLALRIARYFDVPVE 64 Query: 72 FFFDVSP 78 F + Sbjct: 65 SVFSLEE 71 >gi|302063488|ref|ZP_07255029.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato K40] Length = 129 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 10/118 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R G +Q++L E +G + +YE+GV L + L+ + Sbjct: 18 FIGVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAEL 77 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 +D S + + + + + ID + + +I L I++S+ Sbjct: 78 L------PADGISSSREHLPKLRD----EAVKKILTIDSIDGLKDVIRLADWILNSQD 125 >gi|294678117|ref|YP_003578732.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294476937|gb|ADE86325.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 451 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 10/130 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR RR+ L + Q L +GI+ + E RV L ++ L + Sbjct: 8 GTRIRERRLTLKLRQADLARAVGISAAYLNLIEHNRRRVSEPLLDTFAKALGVAPVALSE 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV-------RSIVS 128 + + + E + + + D ++I E V + + + Sbjct: 68 GAESALFEALREAAAGVAGGAGTGTGDAVGA---LIDPSELERIEEFVGRFPGWAKVLAA 124 Query: 129 SEKKYRTIEE 138 + + +E Sbjct: 125 RQSRLAALER 134 >gi|284043418|ref|YP_003393758.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947639|gb|ADB50383.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 89 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + +P + +G R+R R +G SQE L + + + V + E+G+ V L+ ++ Sbjct: 2 RAKDPELVALGARVRELRERVGKSQETLAHDSDELHWTYVGQIERGLRNVTFKNLRRLAR 61 Query: 65 VLESPISFFFDVSPTVCSDISSEEN 89 LE ++ F T + + Sbjct: 62 GLEVDVAELFRPVGTPVRSPTDDAA 86 >gi|302866813|ref|YP_003835450.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315503228|ref|YP_004082115.1| helix-turn-helix domain protein [Micromonospora sp. L5] gi|302569672|gb|ADL45874.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 27029] gi|315409847|gb|ADU07964.1| helix-turn-helix domain protein [Micromonospora sp. L5] Length = 162 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 5/113 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISE 64 +P+ ++G R+R R G+S + + E ++ V YE+G V SRL +++ Sbjct: 1 MPSEYAKSLGARLRSIRQQQGLSLQGVEEKSNGRWKAVVVGSYERGDRAVTVSRLAELAD 60 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL---NRYFIQIDDVK 114 P+S V + +S+ ++ + L RY I + Sbjct: 61 FYRVPVSELLPDGSGVRHEPTSKIVLDLERLYDEASEDLAYVARYARAIQQQR 113 >gi|257139484|ref|ZP_05587746.1| helix-turn-helix domain-containing protein [Burkholderia thailandensis E264] Length = 119 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 50/117 (42%), Gaps = 16/117 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VGK I RR ++QE + E LG+ + + + E+G+ +RL +++V + ++ Sbjct: 15 RRVGKAIARRREESQLTQEDVAEQLGVGNEAISRIERGIVMPTVARLVQLAKVFQCNVAD 74 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + D + + ++ +S + R+ ++ +V ++ + Sbjct: 75 LLTEASHRPDDQARHLSQLLTKLS----------------PQDRETLVSIVETLAAR 115 >gi|251794968|ref|YP_003009699.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542594|gb|ACS99612.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 272 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 1/105 (0%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD-VS 77 I + R G +QE+L LGI+FQ V K+E + S L + LE I VS Sbjct: 9 IAIYRKERGFTQEELATKLGISFQAVSKWENALTMPDLSLLPELCRTLEVSIDKLLGYVS 68 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 I EE ++ + ++ R K++++ Sbjct: 69 QDKTITIYEEEYKTENYYWGTEPNSGVYEVLKAMPPSRRLKLLDI 113 >gi|258517409|ref|YP_003193631.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257781114|gb|ACV65008.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 218 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 26/75 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R L ++Q++ + L I + EKG S + I + Sbjct: 1 MAIGERIKSLRKFLKLTQQQFADALDIDQGHIAGIEKGSKNPSKSLQKVICLTFYVNDIW 60 Query: 73 FFDVSPTVCSDISSE 87 + Sbjct: 61 LKTGGGEMFISPEES 75 >gi|229115222|ref|ZP_04244632.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] gi|228668362|gb|EEL23794.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] Length = 404 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 2/130 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R ++Q L +T + + E G LQ+I+E L SF Sbjct: 4 LGAKIKTLRKEKKLTQTDL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + ++ + ++ + ++ +Q + L + V++ K + Sbjct: 63 EDDDVETIELIQQMEQLIKANKYDEVYEILLPIVQKELPPTLNT-ARLYKQFVTAAAKMK 121 Query: 135 TIEEECMVEQ 144 E VE+ Sbjct: 122 DYNIEHYVEK 131 >gi|219852278|ref|YP_002466710.1| XRE family transcriptional regulator [Methanosphaerula palustris E1-9c] gi|219546537|gb|ACL16987.1| transcriptional regulator, XRE family [Methanosphaerula palustris E1-9c] Length = 72 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R + ++QE LG +G+ Q + EKG I+ I F Sbjct: 3 NKIKVFRAMNDLTQENLGVAIGVNRQTILAIEKGKYVPSLDLAFKIARYFGVNIEDMFIY 62 Query: 77 SPTVCSDISS 86 +++ Sbjct: 63 EEENSINLAH 72 >gi|213972069|ref|ZP_03400162.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato T1] gi|213923155|gb|EEB56757.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato T1] Length = 118 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 10/118 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R G +Q++L E +G + +YE+GV L + L+ + Sbjct: 7 FIGVRVRAFRKAHGFNQDQLAELVGCEKMTISRYERGVGTPNLDHLVKLCVALKISPAEL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 +D S + + + + + ID + + +I L I++S+ Sbjct: 67 L------PADGISSSREHLPKLRD----EAVKKILTIDSIDGLKDVIRLADWILNSQD 114 >gi|189352431|ref|YP_001948058.1| phage XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|327198009|ref|YP_004306377.1| gp11 [Burkholderia phage KS5] gi|189336453|dbj|BAG45522.1| phage XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|310657143|gb|ADP02258.1| gp11 [Burkholderia phage KS5] Length = 160 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 15/117 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R+R R +SQ E G+T + YEKG A L+ I+ + F Sbjct: 11 VSIGDRLRDERKRTSLSQRAFAERGGVTEKTQVLYEKGERVPDAIYLEKIAA-AGVDVLF 69 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 E ++ + D K R ++ ++ + Sbjct: 70 VLTGHRNSAELSPDE--------------EVLVTGYRSLDAKGRAGVLGMIAGMTQQ 112 >gi|160934569|ref|ZP_02081955.1| hypothetical protein CLOLEP_03442 [Clostridium leptum DSM 753] gi|156866022|gb|EDO59394.1| hypothetical protein CLOLEP_03442 [Clostridium leptum DSM 753] Length = 121 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 3/115 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NK+ + G+ I+ R G+S+ +L + L I + + E L Sbjct: 3 MKQNKEKFDF--KAFGQAIKAARKAKGISRNQLADTLNIAPRYIASIENSGQHPSLQILY 60 Query: 61 HISEVLESPIS-FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + +L+ + FFF S + + ++D +S D L+ I++ Sbjct: 61 ELVTLLDVSVDQFFFPEREQEKSTRRRQLDTMLDGMSEKDLKILSATAKGIEEAN 115 >gi|84685009|ref|ZP_01012908.1| regulator of anaerobic catobolism of benzoate BzdR [Maritimibacter alkaliphilus HTCC2654] gi|84666741|gb|EAQ13212.1| regulator of anaerobic catobolism of benzoate BzdR [Rhodobacterales bacterium HTCC2654] Length = 302 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 2/117 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 ++ + + VG+R+R R G+ + L E G++ + + + E G + LQ Sbjct: 16 SETDRVVDDLIARVGERVRAARDRKGIPRRVLSEKSGVSPRYLAQLEAGEGNISIGLLQK 75 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++ L+ I + SD + +T + + + R+ Sbjct: 76 VAHALDHKIEWLVGEDDPWTSDALRIADLYRS--ATAQVQEAVLATLSPEPTAQRRA 130 >gi|293365795|ref|ZP_06612501.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|306824899|ref|ZP_07458243.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|306829820|ref|ZP_07463007.1| transcriptional regulator [Streptococcus mitis ATCC 6249] gi|307703337|ref|ZP_07640281.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|315613479|ref|ZP_07888387.1| transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|291315728|gb|EFE56175.1| conserved hypothetical protein [Streptococcus oralis ATCC 35037] gi|304427831|gb|EFM30924.1| transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304433110|gb|EFM36082.1| transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307623113|gb|EFO02106.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|315314475|gb|EFU62519.1| transcriptional regulator [Streptococcus sanguinis ATCC 49296] Length = 69 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R+ ++Q L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 78 PTVC 81 Sbjct: 66 EDEK 69 >gi|291166792|gb|EFE28838.1| transcriptional regulator, Cro/CI family [Filifactor alocis ATCC 35896] Length = 172 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 38/76 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I+ R++ ++QE+L +T + K E+ + S L I EVL + + Sbjct: 1 MDIGEKIKRLRILNQLTQEELALRCDLTKGFISKVERNLTSPSISTLMDILEVLGTDLKS 60 Query: 73 FFDVSPTVCSDISSEE 88 FFD + ++ Sbjct: 61 FFDDAIDDKVVYGKDD 76 >gi|288921266|ref|ZP_06415550.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288347356|gb|EFC81649.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 490 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 6/121 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLES 68 P + +G +R R G++Q++L + LG V K E G + S L+HI+ L Sbjct: 15 PTSVGIGSLLRAYRQAHGLTQQQLADLLGFDQSYVSKVESGRRAIHDISTLRHIARNLGL 74 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + ++ ST + + ++ ++ + I L R+ Sbjct: 75 SPE-----DVGLAPGGLADRRREPPRGSTVEKVAGSQRAWRLTRDHLNHHRISLARAAAR 129 Query: 129 S 129 Sbjct: 130 L 130 >gi|253578952|ref|ZP_04856223.1| predicted protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849895|gb|EES77854.1| predicted protein [Ruminococcus sp. 5_1_39BFAA] Length = 170 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 27/69 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R+ +Q +L +G+T + + YEKG + + ++ + + Sbjct: 5 SRIKDLRIENNYTQRELAAKIGLTPKMISFYEKGERVPPLDIIVKLVQIFNVSSDYLLGL 64 Query: 77 SPTVCSDIS 85 S D Sbjct: 65 SDKRYPDED 73 >gi|300860062|ref|ZP_07106150.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|300850880|gb|EFK78629.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|315145159|gb|EFT89175.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315163067|gb|EFU07084.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|327534455|gb|AEA93289.1| cro/CI family transcriptional regulator [Enterococcus faecalis OG1RF] Length = 232 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 39/104 (37%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + + +EN + P + ++ + ++ Sbjct: 66 WLLYGNFDRFVRQLIKENFQNKQLLKPP--FFTQLMGRLSEEQL 107 >gi|228904657|ref|ZP_04068720.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 4222] gi|228854977|gb|EEM99572.1| Transcriptional regulator, XRE [Bacillus thuringiensis IBL 4222] Length = 105 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 7/111 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R L M Q +L + +G+ + + YE +++I+ V + Sbjct: 2 GSRIKEVRKSLKMKQNELADAVGVNYTMISLYESNKREPSRETVENIARVTNVSADYIMG 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +S D + + + D + + Q+ K R+KII ++ + Sbjct: 62 LSKHKTFDKETSKKIIDDVE------DIMKRINQLPADK-REKIINMINDL 105 >gi|229032011|ref|ZP_04187995.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] gi|228729317|gb|EEL80310.1| Transcriptional regulator, MerR [Bacillus cereus AH1271] Length = 181 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + E + ++ Sbjct: 61 LLLEQKDRLKVVKKVERKYSVYGKDEQRIEHV 92 >gi|229175843|ref|ZP_04303341.1| hypothetical protein bcere0006_49140 [Bacillus cereus MM3] gi|228607576|gb|EEK64900.1| hypothetical protein bcere0006_49140 [Bacillus cereus MM3] Length = 65 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 5 NKIKELRKQHHITQVEMAKVMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|269125959|ref|YP_003299329.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310917|gb|ACY97291.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 141 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 4/127 (3%) Query: 7 IPNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + VD V K + RR LG++QE+L E G+T + + E G A I Sbjct: 1 MAGQVDRERVAKYVVARRGSLGLTQEQLAERAGVTVKTIYNLESGGRWPQARTRGAIEAA 60 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF---IQIDDVKVRQKIIEL 122 L + + EE D + L+ + ++ D + R+ + Sbjct: 61 LRWRPGDLVRIGEGQEPSVIPEEAAEPDLDTVVRELRELEAYFADLRADSGERRRMALAF 120 Query: 123 VRSIVSS 129 +R++ Sbjct: 121 LRALYGE 127 >gi|255658093|ref|ZP_05403502.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849858|gb|EEX69865.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 143 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 3/96 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R G+SQ ++ LGIT KYE G + + +L+ ++++ + Sbjct: 6 QRLRALRKREGLSQTEVARILGITRTAYNKYESGASAP-SRKLRELAQLYHVSTDYILGE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + + + + L L+ I D Sbjct: 65 EDALAEKLREADARTSSHL--RKYLDLSDEGKDIVD 98 >gi|152995548|ref|YP_001340383.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1] gi|150836472|gb|ABR70448.1| transcriptional regulator, XRE family [Marinomonas sp. MWYL1] Length = 176 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 33/93 (35%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + P+ ++G+ I+ RM G+S +L G+ + + E+G + ++ L Sbjct: 1 MNKPILGSLGRNIQKMRMAKGLSLSQLALDAGLAKSNLSRIEQGEGNPTLETIWRLAVQL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 P + + + + P Sbjct: 61 NVPFGDLVATVESTLGENGVQVRLIDQGEDNPR 93 >gi|72161456|ref|YP_289113.1| helix-hairpin-helix DNA-binding motif-containing protein [Thermobifida fusca YX] gi|71915188|gb|AAZ55090.1| helix-turn-helix motif [Thermobifida fusca YX] Length = 165 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 38/113 (33%), Gaps = 6/113 (5%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISEV 65 P+ +G R+R R G+S + E ++ V YE+G V +L ++E Sbjct: 3 PSEYAKALGARLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQKLADLAEF 62 Query: 66 LESPISFFFDVSPTVCS----DISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 P+S P + M + L RY I + Sbjct: 63 YGVPMSELLPGEPAPAPLGPTPKLVIDLERMQQLPKEKAGPLARYVATIQSQR 115 >gi|89097356|ref|ZP_01170246.1| post-exponential-phase response transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89088179|gb|EAR67290.1| post-exponential-phase response transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 115 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 VG+RI+ R++ G S +L E G++ + E+ L ++ L + + Sbjct: 1 MVGERIKRLRLLRGFSINELAEKSGVSKSYLSYIERDIQKNPSLQVLSKLAATLGTSVEE 60 Query: 73 FFDVSPTVCSDISSEENNV 91 D + + + Sbjct: 61 LLDYKVRSNIEPTELDPEW 79 >gi|86140951|ref|ZP_01059510.1| hypothetical protein MED217_17405 [Leeuwenhoekiella blandensis MED217] gi|85832893|gb|EAQ51342.1| hypothetical protein MED217_17405 [Leeuwenhoekiella blandensis MED217] Length = 275 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 35/92 (38%), Gaps = 4/92 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I R G +QE+L E I+ + + + E G ++ I L+ + Sbjct: 5 QLGLKILELRQQKGFTQEELVEQCNISVRTILRIEAGEVMPRVYTVKTILAALDRDLDDL 64 Query: 74 ----FDVSPTVCSDISSEENNVMDFISTPDGL 101 F+ + +++ + F+ L Sbjct: 65 QESVFEKKVKKAFFLEIDDDKKVSFLFNQLHL 96 >gi|42783489|ref|NP_980736.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47566547|ref|ZP_00237369.1| transcriptional regulator, merR family [Bacillus cereus G9241] gi|206976014|ref|ZP_03236924.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217961850|ref|YP_002340420.1| DNA-binding protein [Bacillus cereus AH187] gi|222097805|ref|YP_002531862.1| DNA-binding protein [Bacillus cereus Q1] gi|42739418|gb|AAS43344.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47556577|gb|EAL14909.1| transcriptional regulator, merR family [Bacillus cereus G9241] gi|206745766|gb|EDZ57163.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217066022|gb|ACJ80272.1| DNA-binding protein [Bacillus cereus AH187] gi|221241863|gb|ACM14573.1| DNA-binding protein [Bacillus cereus Q1] Length = 181 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + E + ++ Sbjct: 61 LLLEQKDRLKVVKKVERKYSVYGKDEQRIEHV 92 >gi|307710471|ref|ZP_07646908.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307618734|gb|EFN97873.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 158 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 34/95 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R ++Q + + +GI+ + +YE G++ V + I + Sbjct: 1 MIGENIKTLRKTHDLTQPEFAKIIGISRNSLSRYENGISSVSTELVDRICKKFNVSYLDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + ++ I L + + Sbjct: 61 VGEEKMLTPVEDYQLTLKIELIKERGANILAQLYR 95 >gi|323526715|ref|YP_004228868.1| XRE family transcriptional regulator with shikimate kinase activity [Burkholderia sp. CCGE1001] gi|323383717|gb|ADX55808.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia sp. CCGE1001] Length = 330 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 3/125 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ Sbjct: 31 TGEREERDPFLTAMGERVRLLRARRGMTRKTLAAETGLSERHLANLESGVGNASVLVLRQ 90 Query: 62 ISEVLESPISFFFDVSPTVCSD---ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I+ L P++ T ++ I + + L F Q R+ Sbjct: 91 IAATLNCPLAEVIGDETTASAEWLLIRELLHGRDQAALQRARMALAEMFAQAPRDPHRKD 150 Query: 119 IIELV 123 I L+ Sbjct: 151 RIALI 155 >gi|218290563|ref|ZP_03494672.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239466|gb|EED06662.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 205 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 9/128 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR--VGASRLQHISEVLESPISFFFD 75 R++ R G+SQE+L E LGI + YE N RL+ I++ + Sbjct: 6 RLKTLREQRGISQERLAEILGIPRSSIAHYESPENDRLPRPERLKKIADFFGVTTDYLI- 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV-----RSIVSSE 130 + + I T + +L ++ + +Q++++ R++ +S Sbjct: 65 GRTNDPHGHAIVNFADSEPIVTAEERRLLETVRELP-PEKKQELMDFADFLRSRAVENSR 123 Query: 131 KKYRTIEE 138 K+ E Sbjct: 124 KEQIATIE 131 >gi|210613654|ref|ZP_03289813.1| hypothetical protein CLONEX_02020 [Clostridium nexile DSM 1787] gi|210151084|gb|EEA82092.1| hypothetical protein CLONEX_02020 [Clostridium nexile DSM 1787] Length = 118 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 38/84 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG++IR R MSQ +L E +G+T + E + + +L I+EVL+ + Sbjct: 14 EVGRKIRHYREKKKMSQLELAEAIGVTQNTIYLIETAQSEMKLEKLFRIAEVLDVTPNKL 73 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 S+ E ++M +S Sbjct: 74 LPGEAKTASNKFFEFEHMMKQLSE 97 >gi|145594394|ref|YP_001158691.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145303731|gb|ABP54313.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 162 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 5/113 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISE 64 +P+ ++G R+R R G+S + + E ++ V YE+G V SRL +++ Sbjct: 1 MPSEYAKSLGARLRSIRQQQGLSLQGVEEKSNGRWKAVVVGSYERGDRAVTVSRLAELAD 60 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL---NRYFIQIDDVK 114 P+S V + +S+ ++ + L RY I + Sbjct: 61 FYRVPVSELLPDGSGVRHEPTSKIVLDLERLYDEASEDLAYVARYARAIQQQR 113 >gi|90420986|ref|ZP_01228890.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] gi|90334764|gb|EAS48540.1| possible transcriptional regulator [Aurantimonas manganoxydans SI85-9A1] Length = 132 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 3/113 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISF-- 72 G+++R R G++Q ++ LG++ + E G R LQ I L Sbjct: 5 GEKVRAFRKERGVTQSQMAAALGVSSAYLSALEHGRRGRPTWDLLQRIIGYLNVIWDDAE 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + + + E + +T +L + + +++ EL + Sbjct: 65 ELERLAELSHPKVTVETAGLGPDATALANRLAETIAILPEADLKRLRAELEEA 117 >gi|77408597|ref|ZP_00785332.1| Tn916, transcriptional regulator, putative [Streptococcus agalactiae COH1] gi|314937580|ref|ZP_07844906.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314942921|ref|ZP_07849734.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314950859|ref|ZP_07853928.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314991492|ref|ZP_07856969.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314994988|ref|ZP_07860108.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|77172790|gb|EAO75924.1| Tn916, transcriptional regulator, putative [Streptococcus agalactiae COH1] gi|313590714|gb|EFR69559.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313593972|gb|EFR72817.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313596868|gb|EFR75713.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313598393|gb|EFR77238.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313642957|gb|EFS07537.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 117 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 1/106 (0%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D VG I+ R+ G+++E++G + I + + E L + Sbjct: 2 RKKEDKYDFRAVGLAIKEARIKRGLTREQVGTIIEIDPRYLTNIENKGQHPSTQVLYDLV 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +L I FF + + + T L L + Sbjct: 62 SLLHVSIDEFFLPTDNLIKSTRRLQIEKYMDSFTDKELSLMEALAK 107 >gi|99082554|ref|YP_614708.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99038834|gb|ABF65446.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 204 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 3/106 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K P NVG IR RR L ++ + L + G++ + + E+ L Sbjct: 1 MQREKPSTEP---NVGPAIRKRRKQLKLTLQALSDRSGVSVGYLSQVERDNATPSLGTLA 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 IS L+ + +F S S + + + Sbjct: 58 QISAALDVGLDYFISASKPSDGLTRSGSRPLFALDDSSLRYEALGA 103 >gi|52140394|ref|YP_086438.1| DNA-binding protein; transcriptional regulator [Bacillus cereus E33L] gi|65317144|ref|ZP_00390103.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|51973863|gb|AAU15413.1| DNA-binding protein; transcriptional regulator [Bacillus cereus E33L] Length = 68 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 8 NKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 67 Query: 77 S 77 Sbjct: 68 E 68 >gi|312864492|ref|ZP_07724723.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] gi|311099619|gb|EFQ57832.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] Length = 137 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 29/74 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K I+ R SQE L E +G++ Q + K+E G + ++E+ E + Sbjct: 1 MINKTIQSLRKKADYSQETLAEMVGVSRQTLSKWELGESLPDIISSSRLAEIFEISLDEL 60 Query: 74 FDVSPTVCSDISSE 87 +E Sbjct: 61 VKGDELPFMSKPTE 74 >gi|307709978|ref|ZP_07646425.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307619349|gb|EFN98478.1| helix-turn-helix family protein [Streptococcus mitis SK564] Length = 114 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 31/68 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI+ R+ ++Q+K+ E L + + K EKG + + ++ +S + + + Sbjct: 9 VGKRIKELRISSNLTQDKIAEYLSLNQSMIAKMEKGERNITSDVIEKLSALFCCTVEYLL 68 Query: 75 DVSPTVCS 82 Sbjct: 69 FGEQAEQQ 76 >gi|295105402|emb|CBL02946.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 66 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R++ R+ G +Q +L +G+T + V +E L +++ + + Sbjct: 4 ISERLQHLRLTHGYTQTELARTMGVTRRAVYAWEHDKC-PEIPHLIQLAQFYQVSTDYLL 62 Query: 75 DVSP 78 ++ Sbjct: 63 GLTE 66 >gi|229526104|ref|ZP_04415508.1| hypothetical protein VCA_000212 [Vibrio cholerae bv. albensis VL426] gi|229336262|gb|EEO01280.1| hypothetical protein VCA_000212 [Vibrio cholerae bv. albensis VL426] Length = 207 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|227356056|ref|ZP_03840447.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227163833|gb|EEI48741.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 187 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 11/145 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + P + + + I R G+S ++ GI + + E G L Sbjct: 1 MMSSPSAPIEI---ISQSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLW 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I L P S I + + L + R Sbjct: 58 AICVALNIPFSQLISSPKPEVKVIRKGDGFKISAEKAYYHAFLL---SSCPNGAKR---- 110 Query: 121 ELVRSIVSSEKKYRT-IEEECMVEQ 144 ++ I K + + + E Sbjct: 111 DIYTVIAQPGKDRVSDPHSKNVTEH 135 >gi|212710117|ref|ZP_03318245.1| hypothetical protein PROVALCAL_01170 [Providencia alcalifaciens DSM 30120] gi|212687324|gb|EEB46852.1| hypothetical protein PROVALCAL_01170 [Providencia alcalifaciens DSM 30120] Length = 214 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 1/71 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ +G+R++ R G+SQ +L + ++ YE G ++ A ISE L Sbjct: 4 INEIIGERLKSIRESRGLSQAQLAKLCGYSAASRIGNYELGERKISADDALVISEALGVS 63 Query: 70 ISFFFDVSPTV 80 + + + Sbjct: 64 PAELMFGTQSD 74 >gi|171056856|ref|YP_001789205.1| XRE family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170774301|gb|ACB32440.1| transcriptional regulator, XRE family [Leptothrix cholodnii SP-6] Length = 200 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 30/84 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I+ +R G++ ++ E I+ + K E G G L I+ L +S F Sbjct: 16 VGAAIKEQRQRHGLTIAQVSEQASISRGMLSKIENGQTSAGMDTLARIARALGVSMSMLF 75 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 S + + + Sbjct: 76 SKYDVTASSAQHIKKGMGMEVVRR 99 >gi|168180189|ref|ZP_02614853.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182668963|gb|EDT80939.1| putative DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 370 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 34/87 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R G++QE+L +G++ V K+E + + L I+ I Sbjct: 6 IGEVIYRLRKEKGITQEQLANFIGVSTAAVSKWESETSYPDITLLPVIAIFFNVTIDTLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 + + + + + + + L Sbjct: 66 NFKIELSDEEVMALFSECEKLFSSGEL 92 >gi|218235252|ref|YP_002368031.1| DNA-binding protein [Bacillus cereus B4264] gi|218163209|gb|ACK63201.1| DNA-binding protein [Bacillus cereus B4264] Length = 374 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 52/138 (37%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R G++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKGITQEELAMYIGITKASVSKWETGQSYPDITFLPLLASYFNVSIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ--------LNRYFIQIDDVKVRQKIIEL-V 123 +P + + + + + + + + + + ++ ++ + Sbjct: 64 LICYTPQMEPEGIRNLYHRLAEAFSEEPFDEVMIECRGIIKKYYSCFSLLLQMGLLFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + K + EE M Sbjct: 124 HMLTEDTDKRIEMLEEAM 141 >gi|206970338|ref|ZP_03231291.1| conserved domain protein [Bacillus cereus AH1134] gi|206734915|gb|EDZ52084.1| conserved domain protein [Bacillus cereus AH1134] Length = 70 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 5 NKIKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTL 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|127514555|ref|YP_001095752.1| XRE family transcriptional regulator [Shewanella loihica PV-4] gi|126639850|gb|ABO25493.1| transcriptional regulator, XRE family [Shewanella loihica PV-4] Length = 65 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +Q L L ++ Q + EKG I+ + + PI F+ Sbjct: 3 NRLKPLRAERNWTQADLAGLLDVSRQTINAIEKGKYDPSLPLAFKIARLFQLPIEAIFEE 62 Query: 77 SPT 79 Sbjct: 63 DEA 65 >gi|310828390|ref|YP_003960747.1| toxin-antitoxin system [Eubacterium limosum KIST612] gi|308740124|gb|ADO37784.1| toxin-antitoxin system [Eubacterium limosum KIST612] Length = 178 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++ +SQ L + L + + VQKYE G + + + I++VL++ ++ Sbjct: 6 EIGARIKESRKLMKLSQTDLADALNKSLRTVQKYESGEIELNIATINEIAKVLKTSPAYL 65 Query: 74 F 74 Sbjct: 66 L 66 >gi|284802769|ref|YP_003414634.1| transcriptional regulator [Listeria monocytogenes 08-5578] gi|284995911|ref|YP_003417679.1| transcriptional regulator [Listeria monocytogenes 08-5923] gi|284058331|gb|ADB69272.1| transcriptional regulator [Listeria monocytogenes 08-5578] gi|284061378|gb|ADB72317.1| transcriptional regulator [Listeria monocytogenes 08-5923] Length = 101 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 33/99 (33%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++++ R +QE + LG++ E G N + ++ E + Sbjct: 3 GDKLKMLRSKTNKTQEDIANILGVSRAAYSHIENGRNEPDMETIVKLANYFEVSTDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 SD+ + + ++ FI+ + Sbjct: 63 RDEIDNSDLLAAHIDDDLTEDERIEIEKYLKFIRSQKEE 101 >gi|241759132|ref|ZP_04757240.1| Helix-turn-helix [Neisseria flavescens SK114] gi|241320551|gb|EER56828.1| Helix-turn-helix [Neisseria flavescens SK114] Length = 76 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 27/69 (39%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + + +G +IR R ++QE L I + + E+G + +L +S L Sbjct: 2 SKISVLIGIKIREIRKQSNINQESLALLADIDRSYMGRIERGEVNITIDKLYQLSSALNC 61 Query: 69 PISFFFDVS 77 + Sbjct: 62 SVHDLLPDD 70 >gi|269122272|ref|YP_003310449.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268616150|gb|ACZ10518.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 180 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 2/91 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R ++Q +L + ++ + + E+ + S L+ I EVL + I Sbjct: 1 MKIGEKLKSLRQEKLLTQNELADRCELSKGFISQLERDLTSPSLSTLEDILEVLGTNIRD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 FF+ T I + +F + G ++ Sbjct: 61 FFN--ETQQEKIVFSVEDFYEFQNEELGYEI 89 >gi|228475590|ref|ZP_04060308.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] gi|228270372|gb|EEK11807.1| putative bacteriophage CI repressor protein [Staphylococcus hominis SK119] Length = 137 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G +I+ R MSQEKL E LG++ + +E+ ++ + I+++ + Sbjct: 1 METKIGHQIQKLRKSENMSQEKLAEKLGVSRHSISNWEREISNPDLKTILEITKLFNVSL 60 Query: 71 SFFFDVSP 78 + Sbjct: 61 NQLIKGVE 68 >gi|254476881|ref|ZP_05090267.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] gi|214031124|gb|EEB71959.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. R11] Length = 188 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 3/81 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N + + + R++ R G+S E + G++ V + E+G + + L Sbjct: 1 MTEN---VDDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLW 57 Query: 61 HISEVLESPISFFFDVSPTVC 81 +++ L+ + D + Sbjct: 58 NLTRALQVDFAGLLDSNEAQD 78 >gi|254932580|ref|ZP_05265939.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293584139|gb|EFF96171.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|332311836|gb|EGJ24931.1| Conserved DNA-binding domain protein [Listeria monocytogenes str. Scott A] Length = 309 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 6/116 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G +++ R G+S + L + I + + E+G V + +E + Sbjct: 3 ELGDKLKQARREKGLSLDDLQQVTKIQKRYLVAIEEGNYAVMPGKFYARAFIKQYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + FD + + +E + + R + +++ Sbjct: 63 IDSATLFDEFESEVPETPQQEVVNNEPTRVQSKRNPMPAQSVGNQANTRNRFFDIL 118 >gi|159038022|ref|YP_001537275.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916857|gb|ABV98284.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 191 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R G++ +L E GI+ + + E G + L I+ P+ Sbjct: 11 EIGPRLKQARAQRGVTLAELAETTGISKSTLSRLEAGQRKPSLELLLPIAAAHRIPLDKL 70 >gi|313905701|ref|ZP_07839062.1| plasmid maintenance system antidote protein, XRE family [Eubacterium cellulosolvens 6] gi|313469525|gb|EFR64866.1| plasmid maintenance system antidote protein, XRE family [Eubacterium cellulosolvens 6] Length = 362 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 48/123 (39%), Gaps = 4/123 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I+ G+ I + G++Q +L G+T V G + A + L SF Sbjct: 14 IHPGETISDILVERGITQAELAARTGVTPAYVCNVIAGKKDISAKFALALEYALGVSKSF 73 Query: 73 FFDV----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + ++ + SE + ++ + +Y +I + +R+ + + + S+ Sbjct: 74 WINLQANYDAELLEASESETITDEERVARNSLKDIVKYLREIGKMPLREAVDDSILSLRK 133 Query: 129 SEK 131 + + Sbjct: 134 ALQ 136 >gi|257074512|ref|YP_003162909.1| transcriptional regulator, XRE family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048733|gb|ACV37918.1| transcriptional regulator, XRE family [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 108 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 1/89 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+++R R G++ E+ E +G + + K R A R+ +++VL F Sbjct: 3 ALGEKVRALRKKAGLTLEQFAEQIGASKSSVWELENKEKARPSADRIHEVAKVLGVTPEF 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 + S ++E + S +G+ Sbjct: 63 LMNDDVAEPSIDVADEAFFRKYQSLDNGV 91 >gi|229551634|ref|ZP_04440359.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|229314952|gb|EEN80925.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus rhamnosus LMS2-1] Length = 260 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 3/116 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 K ++ R G Q+ E + + V ++E G A L I+ + + Sbjct: 4 KNLKYLRAKRGYDQQTFAEMIHRSVSTVSEWESGKYTPKAGILADIANMFGVKLDDMMNK 63 Query: 75 DVSPTVCSDISSEENNVMDFIS-TPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 D+S +V + + + N M + Q+++ + ++ L + Sbjct: 64 DLSKSVDNTVIEKTTNTMRKLHPVRQQKVYTYAEKQLNEQQNPDNVVSLDEAHAER 119 >gi|258654029|ref|YP_003203185.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557254|gb|ACV80196.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 64 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 22/60 (36%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G +Q L + L ++ Q V E G I+ + + I FD Sbjct: 5 LRSLREAKGWTQGALADRLEVSRQTVNALETGKYDPSLPLAFRIARLFDRAIEEVFDPDG 64 >gi|226366606|ref|YP_002784389.1| hypothetical protein ROP_71970 [Rhodococcus opacus B4] gi|226245096|dbj|BAH55444.1| hypothetical protein [Rhodococcus opacus B4] Length = 208 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 24/69 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R + +S E L ++ + E G L I+ L +S Sbjct: 27 ALGARIRTERQLRRLSLEDLARSSEVSRSMLSAIELGAKVPTVLVLDRIAVALGVSVSRL 86 Query: 74 FDVSPTVCS 82 D + Sbjct: 87 LDEEREGRA 95 >gi|78062077|ref|YP_371985.1| transcriptional regulator [Burkholderia sp. 383] gi|77969962|gb|ABB11341.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia sp. 383] Length = 220 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 23/72 (31%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R ++ + + G+ + E L I E + Sbjct: 30 QIGQRLRALRQSRDLTLNEASQLTGVPAATFSRIETNKMSPTFGVLHRIIEGMGFDWRDV 89 Query: 74 FDVSPTVCSDIS 85 P + +S Sbjct: 90 LTNQPRHRNSLS 101 >gi|30265072|ref|NP_847449.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47778382|ref|YP_021927.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|65317017|ref|ZP_00389976.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|165870871|ref|ZP_02215523.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|228930058|ref|ZP_04093068.1| hypothetical protein bthur0010_47400 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228948759|ref|ZP_04111036.1| hypothetical protein bthur0007_48830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124568|ref|ZP_04253753.1| hypothetical protein bcere0016_48520 [Bacillus cereus 95/8201] gi|30259749|gb|AAP28935.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47552087|gb|AAT34402.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|164713380|gb|EDR18905.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|228658908|gb|EEL14563.1| hypothetical protein bcere0016_48520 [Bacillus cereus 95/8201] gi|228810891|gb|EEM57235.1| hypothetical protein bthur0007_48830 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829557|gb|EEM75184.1| hypothetical protein bthur0010_47400 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 79 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+ + P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVE 65 Query: 72 FFFDVSPTVCSDIS 85 F + Sbjct: 66 EIFTLVEGEDDGEE 79 >gi|315648648|ref|ZP_07901744.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315275850|gb|EFU39201.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 189 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ VG+ ++ R G+S + + E G++ + + E+G + S L I L Sbjct: 3 PIHKKVGRNLQAIRKSRGLSLDNVAELTGVSKAMLGQIERGDSNPTISVLWRIVSGLGIS 62 Query: 70 ISFFFDVSPTVCSDISSEENNVMD 93 + + + T + +S ++ Sbjct: 63 FTTLIEETETEVTVVSPDDLEPFH 86 >gi|257874864|ref|ZP_05654517.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257809030|gb|EEV37850.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 86 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 30/66 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R++ ++Q++L + +G++ Q + EKG ++ V + I+ F Sbjct: 16 IANKVYEYRVLARLTQQELADKVGVSKQTIFVMEKGNYTPTLLLAYRLANVFQVDITDLF 75 Query: 75 DVSPTV 80 + Sbjct: 76 TYTEGE 81 >gi|261344492|ref|ZP_05972136.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567400|gb|EFB72935.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 92 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 38/88 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G +I+ R + +++ + +GI Q +YEKG +R+ +L+ ++ Sbjct: 5 HTISEIIGHKIKFIRERKKLPLQEVADAVGIDEMQQIRYEKGQSRIPIDKLKQYADYFGI 64 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFIS 96 + FF + I FIS Sbjct: 65 NMVTFFIFTEVEKKKIREHVKKTEKFIS 92 >gi|255505268|ref|ZP_05345130.3| conserved domain protein [Bryantella formatexigens DSM 14469] gi|255269040|gb|EET62245.1| conserved domain protein [Bryantella formatexigens DSM 14469] Length = 86 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R M+Q++L + +G++ Q + + E+ I++V + I FD Sbjct: 22 SKIHIYRATKRMTQQELADLVGVSRQTIMQLERNRYNPSMLLAYSIAKVFDVTIEDLFDF 81 Query: 77 SP 78 S Sbjct: 82 SE 83 >gi|222528145|ref|YP_002572027.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222454992|gb|ACM59254.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 81 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 30/66 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I + ++L + +G+T Q + KY +G + + +L I+E P+ +F Sbjct: 7 IGNNIHALMKKQNVKIKQLADLIGVTRQTMTKYLEGEVIIDSEKLFKIAEFFGKPLDYFL 66 Query: 75 DVSPTV 80 + Sbjct: 67 ENKHEE 72 >gi|254420808|ref|ZP_05034532.1| hypothetical protein BBAL3_3118 [Brevundimonas sp. BAL3] gi|196186985|gb|EDX81961.1| hypothetical protein BBAL3_3118 [Brevundimonas sp. BAL3] Length = 65 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R++L R+ G +QE+LG+ LG++ Q V E + I+ + P+ F+ Sbjct: 3 NRLKLLRVERGWTQEQLGQALGVSRQAVIALETERHDPSLDLAYRIAAAFDRPVEEIFE 61 >gi|153954625|ref|YP_001395390.1| hypothetical protein CKL_2007 [Clostridium kluyveri DSM 555] gi|219855103|ref|YP_002472225.1| hypothetical protein CKR_1760 [Clostridium kluyveri NBRC 12016] gi|146347483|gb|EDK34019.1| Hypothetical protein CKL_2007 [Clostridium kluyveri DSM 555] gi|219568827|dbj|BAH06811.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 106 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 13/114 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R + ++ KL LGI+ Q+ + E VN + I + +S FF Sbjct: 4 LGARIRELRKLNNVTAVKLSAKLGISQGQLSRIENNVNTAQFDTIMRICDFFSITLSEFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + N + T + +L + ++ + I ++++I Sbjct: 64 NDD------------NSEHIVLTSELKELLNSAKDLTPSQL-EAIQSIIKAIKE 104 >gi|146311755|ref|YP_001176829.1| XRE family transcriptional regulator [Enterobacter sp. 638] gi|145318631|gb|ABP60778.1| transcriptional regulator, XRE family [Enterobacter sp. 638] Length = 191 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 37/98 (37%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +P+ ++ + RIRL R G S +L E G++ + K E+ + A+ L +S Sbjct: 2 NTMPDDMNHRISARIRLERESRGWSLSELAERAGVSRAMIHKIERSESSPTATLLARLSG 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 +S + + N + L+ Sbjct: 62 AFGISMSTLIARAEMQEGKLLRFANQPVWRDPQSQYLR 99 >gi|88855827|ref|ZP_01130490.1| putative transcriptional regulator [marine actinobacterium PHSC20C1] gi|88815151|gb|EAR25010.1| putative transcriptional regulator [marine actinobacterium PHSC20C1] Length = 201 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 35/99 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R ++ ++L E G++ + V E+G L +SE L + Sbjct: 12 IGARVKNERQARKLTLDQLAENAGVSRRMVINVEQGAANPSVGTLLRLSEALGVSLPALV 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + + ++ + G + I + Sbjct: 72 EPPTAQKAKVTRAGAGAALWAGENGGRGILMSSSNIPEA 110 >gi|307131678|ref|YP_003883694.1| hypothetical protein Dda3937_02768 [Dickeya dadantii 3937] gi|306529207|gb|ADM99137.1| hypothetical protein Dda3937_02768 [Dickeya dadantii 3937] Length = 81 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR RR LG+SQE L GI + + E+G V L I++ LE + F Sbjct: 17 LGQTIRQRREFLGLSQENLASATGIDRSHMGRIERGERNVTLLNLLRIADALEWSLEQLF 76 >gi|261251082|ref|ZP_05943656.1| transcriptional regulator YidN, Cro/CI family [Vibrio orientalis CIP 102891] gi|260937955|gb|EEX93943.1| transcriptional regulator YidN, Cro/CI family [Vibrio orientalis CIP 102891] Length = 188 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 47/132 (35%), Gaps = 4/132 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG ++ R G S +K + G++ + + E+G + ++L I+ E S Sbjct: 5 IKVGDNLKRLRSDKGWSLDKAAKETGVSKAMLGQIERGESSPTVAKLWQIASGFEVSFSS 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F + N + G ++ F + + +I EL ++ + + Sbjct: 65 FITTCSNNELTSLFRDANELRREEYNVGFFVSLLFP--FEPALGFEIFEL--TLAPNYQH 120 Query: 133 YRTIEEECMVEQ 144 + E Sbjct: 121 ESEPHNLGVTEH 132 >gi|251789116|ref|YP_003003837.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537737|gb|ACT06358.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 81 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR RR +LG+SQE L GI + + E+G V L I++ LE + F Sbjct: 17 LGQTIRQRRELLGLSQENLASATGIDRSHMGRIERGERNVTLLNLLRIADALEWSLEQLF 76 >gi|160934049|ref|ZP_02081436.1| hypothetical protein CLOLEP_02912 [Clostridium leptum DSM 753] gi|156866722|gb|EDO60094.1| hypothetical protein CLOLEP_02912 [Clostridium leptum DSM 753] Length = 236 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I L R G+SQ++ L I+ + YEKG+ G + ++ + +P Sbjct: 9 ITLLRKERGLSQKQAASDLQISQALLSHYEKGIRECGLDFVVRTADYYNVSCDYLLGRTP 68 Query: 79 TVCSDISSEEN 89 + E+ Sbjct: 69 DRSGATLTVED 79 >gi|110834231|ref|YP_693090.1| transcriptional regulator [Alcanivorax borkumensis SK2] gi|110647342|emb|CAL16818.1| transcriptional regulator, putative [Alcanivorax borkumensis SK2] Length = 71 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N G ++R R G+SQE+L G+ + E+G + ++ IS+ L Sbjct: 1 MSNARLQAFGAKVRAMRKQKGLSQEELASLAGLDRSYMGHIERGEKNITLLKIYQISDAL 60 Query: 67 ESPISFFFDVS 77 P + F Sbjct: 61 SLPAAIFLTDE 71 >gi|103487671|ref|YP_617232.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977748|gb|ABF53899.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 222 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 38/95 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R+ ++Q +L LG++ + +E R A R++ +SE L IS Sbjct: 128 GSRLQRLRVARELTQGQLAAQLGVSEPSISAWELDKARPKAGRMEALSEALGVEISELLG 187 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + T + G+ R I+I Sbjct: 188 IDGTEPLGTLIARAKQQIARAAGVGVDRVRVTIEI 222 >gi|66046479|ref|YP_236320.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63257186|gb|AAY38282.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a] Length = 189 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 1/109 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M PV +V + +R R +SQ L E G++ + + E G V + L Sbjct: 1 MHKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLD 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++E LE S +P E I+ + L R + Sbjct: 61 RVAEALEVAFSDLIQ-APENRDYSRINELAWAGTIAGSKAVLLARAVAR 108 >gi|21221957|ref|NP_627736.1| DNA-binding protein [Streptomyces coelicolor A3(2)] gi|4678664|emb|CAB41077.1| putative DNA-binding protein [Streptomyces coelicolor A3(2)] Length = 390 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R + G ++++L + +T V +YE G R +++ ++E L P +FF Sbjct: 19 GARLTQARRLAGWTKKELATKINVTPAAVGQYEAGAIRPRPEQVRRLAEALGMPSAFFTA 78 Query: 76 VSPTVCSDISS 86 P D ++ Sbjct: 79 GRPRAGLDTAA 89 >gi|326693522|ref|ZP_08230527.1| HTH-type transcriptional regulator [Leuconostoc argentinum KCTC 3773] Length = 137 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 33/77 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++I+L R ++Q++L L ++ Q V +E S L +S++ + + Sbjct: 1 MLISEKIKLLRQDNRLTQKELALKLHVSAQAVSNWELNKGFPDISNLIMLSDLFDITLDS 60 Query: 73 FFDVSPTVCSDISSEEN 89 + + ++ Sbjct: 61 LIKEDADMKEQLLQDKA 77 >gi|307130384|ref|YP_003882400.1| transcriptional regulator [Dickeya dadantii 3937] gi|306527913|gb|ADM97843.1| Transcriptional regulator [Dickeya dadantii 3937] Length = 188 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 4/93 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + D + RIR R G S L E ++ + K E+G + A+ L Sbjct: 1 MSKETNM----DKRIAARIRSERENRGWSLSDLAEKASVSRAMIHKIERGESSPTANLLG 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 +S +S + + + Sbjct: 57 KLSGAFGLSMSTLLARAEMKQGRLLRVNDQPTW 89 >gi|295101270|emb|CBK98815.1| Helix-turn-helix [Faecalibacterium prausnitzii L2-6] Length = 109 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 20/125 (16%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK ++I +G I++ R G +Q+ L E LG+T + E+G + + LQ Sbjct: 1 MREKK---DINIEIGGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQR 57 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + +L + ++ L L R I + RQ++ E Sbjct: 58 LCRLLGVSADRIIFGTEEPEAEA----------------LALARRISDIK-PEYRQQVQE 100 Query: 122 LVRSI 126 L+ +I Sbjct: 101 LLSAI 105 >gi|268610909|ref|ZP_06144636.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 73 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 28/69 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +RIR R + +Q+ + + L I + YE GV + L I+++ + + Sbjct: 1 MIYERIRNLREDMDYTQQHMADLLFINRRTYSSYETGVRGIPNEVLSQIADIFNTSTDYL 60 Query: 74 FDVSPTVCS 82 + Sbjct: 61 LGRTDEKKP 69 >gi|219855544|ref|YP_002472666.1| hypothetical protein CKR_2201 [Clostridium kluyveri NBRC 12016] gi|219569268|dbj|BAH07252.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 375 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 52/134 (38%), Gaps = 11/134 (8%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R G++QE+L + +G++ V K+E G++ L ++ + SP Sbjct: 13 IIQKRKEKGITQEQLADYIGVSKASVSKWESGLSYPDILLLPELATYFNVSVDELLGYSP 72 Query: 79 TVC--------SDISSEENNVMDFISTPDGLQLNRYFIQIDDV--KVRQKIIELVRSIVS 128 + + +S E ++ + + + Q ++ + + Sbjct: 73 QLTKKDIKKIYNKLSHEFATKSFDEVMEQCNKMIKKYYSCFSFLLSMIQLLLNYL-PLAK 131 Query: 129 SEKKYRTIEEECMV 142 +E+ + I +C++ Sbjct: 132 TEEIKKEIIHQCIL 145 >gi|218676103|ref|YP_002394922.1| hypothetical protein VS_II0323 [Vibrio splendidus LGP32] gi|218324371|emb|CAV25742.1| Conserved hypothetical protein [Vibrio splendidus LGP32] Length = 521 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G L+ I++V Sbjct: 29 FLGTKIRNLRKRNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAQVF 88 Query: 67 ESPISFFFDVSPTVCSDISS 86 + ++F D + Sbjct: 89 QKNPTWFLDDESEQQAIAPD 108 >gi|210621510|ref|ZP_03292670.1| hypothetical protein CLOHIR_00613 [Clostridium hiranonis DSM 13275] gi|210154709|gb|EEA85715.1| hypothetical protein CLOHIR_00613 [Clostridium hiranonis DSM 13275] Length = 136 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 32/75 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I R GM+Q L + +G+T + V K+E+ ++ + + ++E+ + + Sbjct: 7 GEMISSLRKDRGMTQLDLAKKMGVTDKAVSKWERDLSFPDINSIPKLAEIFDVSVDELMQ 66 Query: 76 VSPTVCSDISSEENN 90 V V Sbjct: 67 VKSDVNVGEEEVVKE 81 >gi|197261593|ref|YP_002154410.1| helix-turn-helix domain protein [Bacillus phage IEBH] gi|197092465|gb|ACH42340.1| helix-turn-helix domain protein [Bacillus phage IEBH] gi|283765986|gb|ADB28402.1| helix-turn-helix domain protein [Bacillus phage 250] Length = 137 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ +R++ R G +Q + E L + + YE G + L ++++ E + + Sbjct: 24 MNLNERLKACREKKGYTQTFISEKLDVNKATLSSYESGRRKPDYETLTKLADIYEVSVDY 83 Query: 73 FFDVS 77 S Sbjct: 84 LLGRS 88 >gi|163734643|ref|ZP_02142082.1| DNA-binding protein [Roseobacter litoralis Och 149] gi|161392136|gb|EDQ16466.1| DNA-binding protein [Roseobacter litoralis Och 149] Length = 218 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 42/100 (42%), Gaps = 2/100 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R G++ +L GI+ + K E G + LQ ++ L P+ Sbjct: 30 LEVAIGREVRGYRKQQGITVAELSALTGISIGMLSKIENGNTSPSLTTLQTLANALSVPL 89 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + FF + + ++ +G + N + + Sbjct: 90 TSFFRRFEESRLAVHTRAGEGVEI--DREGTRANHQYKLL 127 >gi|159035684|ref|YP_001534937.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157914519|gb|ABV95946.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 401 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 2/109 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFFF 74 G RI+L R G++QE + G++ +K+E G V + I+ +L + Sbjct: 11 GGRIKLYRRRRGLTQEVCAQLKGVSVGAWRKWESGERSVNSLADWIEIARILNVRDLYKL 70 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 P E+ + + Q+ V + + L Sbjct: 71 TGHPLGVLPDDPAEHESVPPL-RAAMTAYAPDIDQLSSVAELRSAVRLA 118 >gi|46402122|ref|YP_006616.1| Gp36 [Klebsiella phage phiKO2] gi|40218266|gb|AAR83052.1| Gp36 [Klebsiella phage phiKO2] Length = 202 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 41/107 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ RR+ L M+ +++ E +GI+ VQ E+G +++ L P+ + Sbjct: 9 GERLKARRLELKMTLKQVAESVGISLPGVQNLERGDVMPSLEIGLALAKCLRMPVQWILY 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + + S + + V R + L Sbjct: 69 GTESDPDRVPVIGTTESGPDSDWQPGEPANTERFLPFVSQRNTVYAL 115 >gi|41057272|ref|NP_958300.1| hypothetical protein VWBp58 [Streptomyces phage VWB] gi|39656095|gb|AAR29746.1| hypothetical protein [Streptomyces phage VWB] Length = 76 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 31/59 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR R++ +SQ +L G+ + + + E G++ G L I+ ++ P++ Sbjct: 16 IGARIRDARILTNLSQLELATLAGVDHKTIHRVEYGLSDPGLGLLLQIAHAVDVPLAVL 74 >gi|52081939|ref|YP_080730.1| phage-like protein [Bacillus licheniformis ATCC 14580] gi|52005150|gb|AAU25092.1| hypothetical phagelike protein [Bacillus licheniformis ATCC 14580] Length = 212 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPIS 71 + VG+RIR RR L MS ++L + L V +YE + + + L+ +++ L + Sbjct: 1 MTVGERIRSRRKQLNMSVDQLAQKLKKNRATVYRYESNEIDNMPLTVLEPLAKALNVTPA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFIS 96 + T +S++ IS Sbjct: 61 YLMGWESTEPVQLSTKYPYYPIGIS 85 >gi|229605809|ref|YP_002876513.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae MJ-1236] gi|229372295|gb|ACQ62717.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae MJ-1236] Length = 114 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 37/87 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +IR R+ ++QE++ +G+ YEKG ++ +++ PI+ Sbjct: 7 SKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAELVSD 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQL 103 S T + + +++ + P+ L Sbjct: 67 SETNIDEKLKSKIRMIESLDEPEKESL 93 >gi|220929667|ref|YP_002506576.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219999995|gb|ACL76596.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 117 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 48/123 (39%), Gaps = 12/123 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 + G R+R R ++Q +LG+ + ++ + + YE L I++ + Sbjct: 1 MRFGDRLRELREERDITQNELGKSINVSGRVIGYYEANDRFPRDENLLKTIADYFNVSVD 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ--KIIELVRSIVSS 129 + +E + D I T + N + D +++ I+L+++ Sbjct: 61 YLLG---------RTENRQMSDEIVTESKIPYNLDLKGLPDEALKKVEDYIDLIKTKYKP 111 Query: 130 EKK 132 +KK Sbjct: 112 DKK 114 >gi|118480114|ref|YP_897265.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|228917662|ref|ZP_04081203.1| hypothetical protein bthur0012_48660 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229094144|ref|ZP_04225224.1| hypothetical protein bcere0021_48550 [Bacillus cereus Rock3-42] gi|229187275|ref|ZP_04314420.1| hypothetical protein bcere0004_48110 [Bacillus cereus BGSC 6E1] gi|118419339|gb|ABK87758.1| DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|228596285|gb|EEK53960.1| hypothetical protein bcere0004_48110 [Bacillus cereus BGSC 6E1] gi|228689247|gb|EEL43068.1| hypothetical protein bcere0021_48550 [Bacillus cereus Rock3-42] gi|228841899|gb|EEM87005.1| hypothetical protein bthur0012_48660 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 79 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVE 65 Query: 72 FFFDVSPTVCSDIS 85 F + Sbjct: 66 EIFTLVEGEDDGEE 79 >gi|91791587|ref|YP_561238.1| transciptional regulator [Shewanella denitrificans OS217] gi|91713589|gb|ABE53515.1| transcriptional regulator, XRE family [Shewanella denitrificans OS217] Length = 508 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A+ L I+ V Sbjct: 13 FLGTKIRNLRKRNHLTMEDLSARCVRMDAGSAPSVSYLSMIERGKRVPSAAMLSVIAAVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + + +F D P + Sbjct: 73 QKEVEWFLDDVPEEAAITPD 92 >gi|325264752|ref|ZP_08131481.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324030044|gb|EGB91330.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 130 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 47/133 (35%), Gaps = 10/133 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I + + R M+Q++L + L I+ Q YE G L IS++ + Sbjct: 3 NIQLVANLARYRKARHMTQKELAKMLNISRQAYSNYETGKRTPDIDLLLKISQIYNITLD 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + S + G++L + + +++ +++ Sbjct: 63 QLIN------QPFSPDGTIREQKGPYQSGVELLSADTIYLTAEE----VSILKGYRTAKD 112 Query: 132 KYRTIEEECMVEQ 144 + R + + ++ Q Sbjct: 113 EVRIVINKLLIPQ 125 >gi|313837698|gb|EFS75412.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes HL037PA2] gi|314972637|gb|EFT16734.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes HL037PA3] gi|328907505|gb|EGG27271.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium sp. P08] Length = 508 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ IR R GM+Q +L E L + + + E G + + I+E LESPI Sbjct: 9 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRIAEALESPI 64 >gi|291301766|ref|YP_003513044.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570986|gb|ADD43951.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 80 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI + R G+S+ +L E LG+ +Q + E+G I++ E + F Sbjct: 8 IYNRIAMLRAERGISRRQLAEALGVHYQTIGYLERGEYSPSLYLALRIAQYFEVEVEVVF 67 Query: 75 DVSP 78 +P Sbjct: 68 STAP 71 >gi|254502876|ref|ZP_05115027.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222438947|gb|EEE45626.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 182 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 8/131 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K I+ R+ GMS L + G+ + + E G L I+ L P SF F Sbjct: 7 IAKAIQRERLKAGMSLSALAKTAGLAKSTLSQLEAGQGNPSVETLWAIASALNVPFSFLF 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR-SIVSSEKKY 133 + T +D + + +++ + R +L R S+ + Sbjct: 67 E---TGTTDKTLIRAGEGEPVASEAAGFTAVLLANCPPGRRR----DLYRTSLSGGALRS 119 Query: 134 RTIEEECMVEQ 144 +E Sbjct: 120 AEPHPAGTIEH 130 >gi|218896717|ref|YP_002445128.1| DNA-binding protein [Bacillus cereus G9842] gi|218542568|gb|ACK94962.1| DNA-binding protein [Bacillus cereus G9842] Length = 404 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 2/130 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R ++Q L +T + + E G LQ+I+E L SF Sbjct: 4 LGAKIKTLRKEKKLTQTDL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + ++ + ++ + ++ +Q + L + V++ K + Sbjct: 63 EDDDVEKIELIQQMEQLIKANKYDEVYEILLPIVQKELPPTLNT-ARLYKQFVTAAAKMK 121 Query: 135 TIEEECMVEQ 144 E VE+ Sbjct: 122 DYNIEHYVEK 131 >gi|126652726|ref|ZP_01724878.1| hypothetical protein BB14905_21323 [Bacillus sp. B14905] gi|126590415|gb|EAZ84534.1| hypothetical protein BB14905_21323 [Bacillus sp. B14905] Length = 134 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 47/116 (40%), Gaps = 2/116 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 R++ R ++QE+L L T + YE G + L +S++L+ + Sbjct: 5 HRLKAARKAKKLTQEQLAGKLQTTKGTISNYENGHSTPSNEMLVLLSKILDVTTDYLLGV 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 +PT + ++ + ++ +F+ +++ + + L+ ++ E Sbjct: 65 TDNPTPVDYKLAGISDEDYNNLSAYQKEVINFFLTRENLFFKNQPENLLDALEQFE 120 >gi|146308997|ref|YP_001189462.1| putative phage repressor [Pseudomonas mendocina ymp] gi|145577198|gb|ABP86730.1| putative phage repressor [Pseudomonas mendocina ymp] Length = 240 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 2/93 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ R GMSQ+ L E + ++ YE + S L I+ L ++ Sbjct: 4 LGQRLKRLRKAKGMSQQALAEECGWASQSRIGNYEADLRAPSLSDLLLIAPALGVSLAEL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 S + + G + Sbjct: 64 -AGSDEWTGAYGVQVQVKNHQVRESVGAETIEA 95 >gi|47097555|ref|ZP_00235089.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes str. 1/2a F6854] gi|254854561|ref|ZP_05243909.1| transcriptional regulator [Listeria monocytogenes FSL R2-503] gi|254900900|ref|ZP_05260824.1| helix-turn-helix domain-containing protein [Listeria monocytogenes J0161] gi|254913887|ref|ZP_05263899.1| transcriptional regulator [Listeria monocytogenes J2818] gi|254938424|ref|ZP_05270121.1| transcriptional regulator [Listeria monocytogenes F6900] gi|47014066|gb|EAL05065.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes str. 1/2a F6854] gi|258607961|gb|EEW20569.1| transcriptional regulator [Listeria monocytogenes FSL R2-503] gi|258611038|gb|EEW23646.1| transcriptional regulator [Listeria monocytogenes F6900] gi|293591904|gb|EFG00239.1| transcriptional regulator [Listeria monocytogenes J2818] Length = 140 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 53/129 (41%), Gaps = 9/129 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G R+R R ++Q+K+ + L I + + YE+ L+ ++E S+ Sbjct: 3 GDRLRSLRENKNLTQQKVADDLNIKRENLSNYERNKREPDYEMLKKLAEYYGVSRSYILG 62 Query: 75 --------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 ++ I + ++D +S D ++ ++D+ + I+ L S+ Sbjct: 63 ETDKKQYWELDDKDERSIQKDLQKMIDDLSNSDAFAYSKEDGEMDENTKKLLIMSLENSL 122 Query: 127 VSSEKKYRT 135 ++++ + Sbjct: 123 RIAKEESKK 131 >gi|107101758|ref|ZP_01365676.1| hypothetical protein PaerPA_01002802 [Pseudomonas aeruginosa PACS2] gi|296389278|ref|ZP_06878753.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313110791|ref|ZP_07796645.1| putative transcriptional regulator, XRE family [Pseudomonas aeruginosa 39016] gi|310883147|gb|EFQ41741.1| putative transcriptional regulator, XRE family [Pseudomonas aeruginosa 39016] Length = 210 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 14/142 (9%) Query: 12 DINVGKRIRL----RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 D +G+R+ R +S + L G++ + + E G + L I++ L+ Sbjct: 23 DDLIGQRVAHNLLRLRGKRNLSLDALARISGVSRAMLAQIESGRSVPSIKVLCKIAQGLK 82 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI--IEL-VR 124 ++ F D + ++ + + DG +R + V +++ EL +R Sbjct: 83 VSVAAFLD--DRAFAGVAVLPAQQSKRLVSADGAFTSRA---LFPFDVARQVEFYELRLR 137 Query: 125 SIVSSEKKYRTI--EEECMVEQ 144 + + + +E +V Q Sbjct: 138 GLGQEDAEAHAPGTQENLVVAQ 159 >gi|303242387|ref|ZP_07328871.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590065|gb|EFL59829.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 147 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 48/132 (36%), Gaps = 10/132 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + + R + G+SQE++ E + I+ Q K+EKG + ++E + + Sbjct: 5 NLIMLRTMNGLSQEQIAEKIDISRQAYGKWEKGETIPDVEKCALLAEFYGTTVDSLLHFD 64 Query: 78 PTVCSDISSEENNVMDF-----ISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + +S + + + D+K +++I L E + Sbjct: 65 TNQDGIVVPPAPKGKHIFGTVTMSERGQIVIPKAARDTMDMKPGERLIVL-----GDENE 119 Query: 133 YRTIEEECMVEQ 144 + + + E+ Sbjct: 120 GIALMKASLFEE 131 >gi|302876028|ref|YP_003844661.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307686745|ref|ZP_07629191.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578885|gb|ADL52897.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 345 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 2/100 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR R ++QE++ L IT V K+E G++ + L ++ VL+ ++ Sbjct: 1 MRIGEVIRNYRKKENLTQEQVANYLNITAPAVNKWESGMSYPDITLLAPLARVLKIDVNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + + ++ +G N+ F + D Sbjct: 61 LVAFDDELTDAEVKILTKGIGETASKEG--FNKAFEKASD 98 >gi|238025484|ref|YP_002909716.1| hypothetical protein bglu_2g21780 [Burkholderia glumae BGR1] gi|237880149|gb|ACR32481.1| Hypothetical protein bglu_2g21780 [Burkholderia glumae BGR1] Length = 156 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R L +SQ + G+T YE + L ++ I + Sbjct: 5 VGARLREERTRLKLSQTAFADLAGVTKATQGNYETNKRSPDTTYLAAVAR-NGVDIQYVV 63 Query: 75 DVSPTVCSDISSEE 88 S ++ + Sbjct: 64 TGQRAAHSGVAVDT 77 >gi|229488922|ref|ZP_04382788.1| regulatory protein [Rhodococcus erythropolis SK121] gi|229324426|gb|EEN90181.1| regulatory protein [Rhodococcus erythropolis SK121] Length = 208 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 27/73 (36%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N + +G R++ R ++ L E GI+ + + E G R L Sbjct: 14 MNVNGPHIDAAISQIGARLKRIRTQRNVTLTALSESTGISKSTLSRLEAGERRPSLELLL 73 Query: 61 HISEVLESPISFF 73 I+ + P+ Sbjct: 74 PIALAHQVPLDQL 86 >gi|226308038|ref|YP_002767998.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226187155|dbj|BAH35259.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 195 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 27/73 (36%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N + +G R++ R ++ L E GI+ + + E G R L Sbjct: 1 MNVNGPHIDAAISQIGARLKRIRTQRNVTLTALSESTGISKSTLSRLEAGERRPSLELLL 60 Query: 61 HISEVLESPISFF 73 I+ + P+ Sbjct: 61 PIALAHQVPLDQL 73 >gi|223984758|ref|ZP_03634870.1| hypothetical protein HOLDEFILI_02166 [Holdemania filiformis DSM 12042] gi|223963244|gb|EEF67644.1| hypothetical protein HOLDEFILI_02166 [Holdemania filiformis DSM 12042] Length = 180 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 40/114 (35%), Gaps = 5/114 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ V I+ R +S E+L + ++ + + E+G S L IS L+ P Sbjct: 1 MNSIVAANIKRLREERKLSMEELAKFSSVSKSMIAQIERGEGNPTLSTLWKISNGLKVPF 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 V P +I F + R + D + R+ I + Sbjct: 61 DSL-TVRPKTQHEIVKISEIQPLFENEGK----VRNYSLFPDDENRRFAIYYLE 109 >gi|195940391|ref|ZP_03085773.1| XRE family transcriptional regulator [Escherichia coli O157:H7 str. EC4024] Length = 175 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 35/94 (37%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + ++ ++ R G S KL E G++ + + E+ + S L I+ L P Sbjct: 2 DITQHLATTLKALRQARGWSLSKLAEETGVSKAMLGQIERNESSPTVSTLWKIATGLNVP 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 S F + ++ ++ P QL Sbjct: 62 FSAFITPESDPQAVFDPQQQAMVVKPLFPWDDQL 95 >gi|170758576|ref|YP_001785951.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169405565|gb|ACA53976.1| DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 130 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 1/94 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FD 75 ++ R G+SQ++LG L ++ Q + K+E G +L + + + + D Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFKISLDELVMD 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 V + N + I + + + + Sbjct: 65 VKAKESTKTEPLVMNRFETIIDSIDRENVKMYTK 98 >gi|254825625|ref|ZP_05230626.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254853405|ref|ZP_05242753.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|255519854|ref|ZP_05387091.1| transcriptional regulator [Listeria monocytogenes FSL J1-175] gi|300764545|ref|ZP_07074537.1| transcriptional activator [Listeria monocytogenes FSL N1-017] gi|258606774|gb|EEW19382.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293594869|gb|EFG02630.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300514652|gb|EFK41707.1| transcriptional activator [Listeria monocytogenes FSL N1-017] Length = 300 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 11/113 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R+ G++Q+++ + I+ +EKG + + S + I + + P+ FF Sbjct: 5 GELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFF- 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY--------FIQIDDVKVRQKII 120 + +++ +DF+ + + + +VR+ I+ Sbjct: 63 -FIYRDFSSTEDDSFWIDFVELSGKNDVVGMQALLDKITLERTEQTEVRKAIL 114 >gi|152982646|ref|YP_001354227.1| hypothetical protein mma_2537 [Janthinobacterium sp. Marseille] gi|151282723|gb|ABR91133.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 109 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +R R G SQE L E + V + E+G L ++ L +S Sbjct: 26 VSLGLAVRQLREAQGWSQEALAEKAQLNRSYVGEVERGKTIPSLITLDKLASALGLKVSD 85 Query: 73 FF 74 Sbjct: 86 LL 87 >gi|114769125|ref|ZP_01446751.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255] gi|114550042|gb|EAU52923.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255] Length = 201 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N I +G IR R G++ L L + + + E+G +V + IS L Sbjct: 1 MTNSDKIRLGSEIREVRKARGLTLNNLSSMLSCSTAYLSRIERGTAQVSEILIVEISTAL 60 Query: 67 ESPISFFF 74 ++FF Sbjct: 61 NIEKNWFF 68 >gi|89889583|ref|ZP_01201094.1| hypothetical protein BBFL7_01400 [Flavobacteria bacterium BBFL7] gi|89517856|gb|EAS20512.1| hypothetical protein BBFL7_01400 [Flavobacteria bacterium BBFL7] Length = 251 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 22/62 (35%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK I+ R I +SQ+ + + + YE+G + + I+ I Sbjct: 5 GKNIKKIRGIKSLSQQAFADLFDLKRGTLGAYEEGRSEPKIETIIKIANYFSISIDDILT 64 Query: 76 VS 77 Sbjct: 65 AE 66 >gi|154244524|ref|YP_001415482.1| helix-turn-helix domain-containing protein [Xanthobacter autotrophicus Py2] gi|154158609|gb|ABS65825.1| helix-turn-helix domain protein [Xanthobacter autotrophicus Py2] Length = 263 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 23/44 (52%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 P+ D ++G R+R R + G++Q ++ E L I V + E Sbjct: 15 PDATDGHIGHRLREIRKLAGLTQAQVAERLQIVQSAVTRLESRK 58 >gi|325962304|ref|YP_004240210.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323468391|gb|ADX72076.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 191 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ V + +G RIR R ++ E++ + G+T + + E+ + + L + +VL Sbjct: 8 PSNVPVAIGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVASLVTLCQVLS 67 Query: 68 SPISFFF 74 I F Sbjct: 68 ISIGDLF 74 >gi|316941295|gb|ADU75329.1| helix-turn-helix domain protein [Clostridium thermocellum DSM 1313] Length = 374 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 31/74 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ + I R G++QE + +G++ V K+E G + + L ++ + I Sbjct: 4 INIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDE 63 Query: 73 FFDVSPTVCSDISS 86 P + + Sbjct: 64 LMGYEPQMSKEDIR 77 >gi|322433358|ref|YP_004210575.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] gi|321165747|gb|ADW71448.1| helix-turn-helix domain protein [Acidobacterium sp. MP5ACTX9] Length = 84 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 28/72 (38%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V + +G+RI G SQ+KL E GI V E G + L IS L Sbjct: 13 MAKDVCVTLGERIYALITERGWSQKKLAELAGIHADYVHDVEYGKKEICLRMLARISAAL 72 Query: 67 ESPISFFFDVSP 78 +S + Sbjct: 73 GCKMSDMLEGME 84 >gi|258653312|ref|YP_003202468.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556537|gb|ACV79479.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 80 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R+ + R G+++ +L E +G+ +Q V E+G I+E E P+ F Sbjct: 7 NRLAVLRAERGITRRQLAEAVGVHYQTVGYLERGEYSPSLVLALRIAEYFEMPVEQVFS 65 >gi|228930605|ref|ZP_04093586.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228829001|gb|EEM74657.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 114 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 28/72 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I+ R G++QE + G + Q++ +E ++ ++ +S + Sbjct: 4 LGQTIKFFRKKTGLTQEDFADKYGFSHGQMKHWETDRHQPDVESIKTLSSIFRISTDTLL 63 Query: 75 DVSPTVCSDISS 86 + S Sbjct: 64 GFENEQDDALLS 75 >gi|220911740|ref|YP_002487049.1| XRE family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858618|gb|ACL38960.1| transcriptional regulator, XRE family [Arthrobacter chlorophenolicus A6] Length = 191 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ V + +G RIR R ++ E++ + G+T + + E+ + + L + +VL Sbjct: 8 PSNVPVAIGSRIRAARQSQRLTIEQVADATGLTKGFLSRVERDLTSPSVASLVTLCQVLS 67 Query: 68 SPISFFF 74 I F Sbjct: 68 ISIGDLF 74 >gi|126726067|ref|ZP_01741909.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126705271|gb|EBA04362.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 130 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/127 (12%), Positives = 49/127 (38%), Gaps = 18/127 (14%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G++ + + E +G++ + ++ +E + +R+Q ++ +L + + Sbjct: 20 GDRLEAARDAKGLTIKGMAEKIGVSVRTIKAWENDRSVPRGNRVQMLAGMLNVSMVWLIS 79 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + S+++ + I +I +L ++ + K Sbjct: 80 GTGNGTSNVAETHDRP------------------IGVNDALGEIAQLKSTLSDAVAKLEA 121 Query: 136 IEEECMV 142 +E+ + Sbjct: 122 LEDRLLK 128 >gi|148556966|ref|YP_001264548.1| helix-turn-helix domain-containing protein [Sphingomonas wittichii RW1] gi|148502156|gb|ABQ70410.1| helix-turn-helix domain protein [Sphingomonas wittichii RW1] Length = 125 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R+R R LG+ Q+++ L I + E G RV A L ++++ +++ Sbjct: 17 RRLGDRLREARKYLGLKQDEVATYLKIPRTALTDIESGQRRVEAIELTRLAKLYRQSVAY 76 Query: 73 FFDVSPTVCS--DISSEENNVMDFISTPDGLQLNR 105 F S + + +ST D +L+R Sbjct: 77 FTGEDEASASLPVDVAHLARRVADLSTEDRAELSR 111 >gi|147921238|ref|YP_684949.1| putative transcription regulator [uncultured methanogenic archaeon RC-I] gi|110620345|emb|CAJ35623.1| putative transcription regulator [uncultured methanogenic archaeon RC-I] Length = 68 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 23/61 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R M+QE L + +G++ Q + EK S ++ I F+ Sbjct: 5 LKELRARHNMTQEDLAQKVGVSRQTIVAIEKQKYDPSLSLAFRLARCFGVKIEDIFEEDT 64 Query: 79 T 79 Sbjct: 65 D 65 >gi|15673253|ref|NP_267427.1| transcription regulator [Lactococcus lactis subsp. lactis Il1403] gi|12724246|gb|AAK05369.1|AE006359_7 transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|326406810|gb|ADZ63881.1| transcriptional repressor [Lactococcus lactis subsp. lactis CV56] Length = 252 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 28/72 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R ++Q +L E LG+ +E+ L+ ++++ + PI Sbjct: 4 GQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQKSTNPTLEILEKLADIYDLPIQELIK 63 Query: 76 VSPTVCSDISSE 87 + + Sbjct: 64 ETDNNAEKQLID 75 >gi|186681969|ref|YP_001865165.1| XRE family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464421|gb|ACC80222.1| transcriptional regulator, XRE family [Nostoc punctiforme PCC 73102] Length = 83 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 34/75 (45%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ +D +G ++ RR G SQE L E G+ + + E+G+ L HI++ L Sbjct: 3 PSKLDQILGLELQRRRTEKGWSQEYLAEVTGLHRTYISQLERGLKSPSVRVLSHITKALG 62 Query: 68 SPISFFFDVSPTVCS 82 +S F S Sbjct: 63 MTMSEFLQPVEESLS 77 >gi|330506970|ref|YP_004383398.1| hypothetical protein MCON_0781 [Methanosaeta concilii GP-6] gi|328927778|gb|AEB67580.1| conserved hypothetical protein [Methanosaeta concilii GP-6] Length = 189 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R + +S E++ E L + YE G+ + AS L I+ L Sbjct: 9 EIGTRLRELRELNRVSPEEMAEHLNVAVDTYNCYEDGMLDIPASILIGIARRLNVDTGLL 68 Query: 74 FDVSPTVCS 82 + S Sbjct: 69 LTGEESKMS 77 >gi|319900779|ref|YP_004160507.1| transcriptional regulator [Bacteroides helcogenes P 36-108] gi|319415810|gb|ADV42921.1| transcriptional regulator [Bacteroides helcogenes P 36-108] Length = 191 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 37/90 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R +S E L + G+ +QV++ E ++ + L I+ VL + Sbjct: 5 KIVGEKIKSLRESQSISMEDLAQRSGLAIEQVERIENNIDLPSLAPLIKIARVLGVRLGT 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 F D + + + + +Q Sbjct: 65 FLDDQDENGPVVCRKNEAQNSISFSNNAIQ 94 >gi|297626284|ref|YP_003688047.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922049|emb|CBL56613.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase (Enoylpyruvate transferase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 511 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +G+ IR R GM+Q +L E L + + + E G + + I+ LESP+ Sbjct: 10 IGRLIRDARKQRGMTQNQLAEELSTSQSAIHRIESGHQNLSLETINRIAGALESPL 65 >gi|289644973|ref|ZP_06477012.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289505209|gb|EFD26269.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 74 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 21/58 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R+ R SQ L + ++ Q + E G ++++ I F Sbjct: 3 NRLRVLRAERRWSQADLADRCRVSRQTINAIETGRYDPSLPLAFTLADIFGLAIEEIF 60 >gi|229175036|ref|ZP_04302554.1| Transcriptional regulator, MerR [Bacillus cereus MM3] gi|228608404|gb|EEK65708.1| Transcriptional regulator, MerR [Bacillus cereus MM3] Length = 181 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 1 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + E + ++ Sbjct: 61 LLLEQKDRLKVVKKVERKYSVYGKDEQRIEHV 92 >gi|197302440|ref|ZP_03167495.1| hypothetical protein RUMLAC_01168 [Ruminococcus lactaris ATCC 29176] gi|197298338|gb|EDY32883.1| hypothetical protein RUMLAC_01168 [Ruminococcus lactaris ATCC 29176] Length = 130 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 12/122 (9%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I + K + R +Q++LG+ L IT Q YE G L +S + I Sbjct: 9 NIQLAKNLLQLRQEHHYTQKQLGDKLNITHQAYSYYETGHRDPNIDMLTKLSALYGFSIE 68 Query: 72 FFFDVSPTVCSDISSEENNVMD----------FISTPDGLQLNRYFIQIDDV--KVRQKI 119 V ++ + + E N T + +L + D K+ +KI Sbjct: 69 QLLTVPCSIKNSFAKESANTYHTGLIITTGDTIYLTEEEAELLIRLREASDDDRKLIKKI 128 Query: 120 IE 121 ++ Sbjct: 129 LD 130 >gi|168699329|ref|ZP_02731606.1| DNA-binding protein, putative [Gemmata obscuriglobus UQM 2246] Length = 89 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+R R+ ++Q +LGE G+ +Q V K E+G + + +++ L F Sbjct: 16 GKRLRELRIDKNLTQSQLGERAGMMYQDVAKLERGEREPMWATVIRLADALGVRADDFRT 75 Query: 76 VSPTVCS 82 + + Sbjct: 76 LEDPLAD 82 >gi|163790416|ref|ZP_02184847.1| putative transcriptional regulator [Carnobacterium sp. AT7] gi|159874320|gb|EDP68393.1| putative transcriptional regulator [Carnobacterium sp. AT7] Length = 65 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+++ R MSQ++L + + +T Q + E+G + I + ++ F Sbjct: 6 RLKVARTKKDMSQQQLADAVNVTRQTISAIERGDYNPTINLCIEICKEFNLTLNDLFWEE 65 >gi|158423697|ref|YP_001524989.1| XRE family-like protein [Azorhizobium caulinodans ORS 571] gi|158330586|dbj|BAF88071.1| helix-turn-helix XRE-family like protein [Azorhizobium caulinodans ORS 571] Length = 231 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 36/101 (35%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G IR R+ G+S +++ + G++ + + E+G++ L+ I L + Sbjct: 48 DRAFGSSIREARLARGLSLQRVADAAGLSVGLLSQVERGISSPSVRVLRAICGALGVTVQ 107 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 F S+ + + F+ D Sbjct: 108 SLFGEDGAPLSESRHVMRPYQRRRLDLGAKGIVKEFLSRSD 148 >gi|153826821|ref|ZP_01979488.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-2] gi|149739342|gb|EDM53588.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-2] Length = 181 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 38/84 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 9 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 F P + S S +++ I T Sbjct: 69 FANDPQLLSSERSFPDDLNMKIHT 92 >gi|114771744|ref|ZP_01449148.1| hypothetical protein OM2255_13689 [alpha proteobacterium HTCC2255] gi|114547816|gb|EAU50706.1| hypothetical protein OM2255_13689 [alpha proteobacterium HTCC2255] Length = 281 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 34/77 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R +SQ ++ E L ++ + +E G ++ +L+ ++ + ++ ++ Sbjct: 2 RIKEYRKSKRLSQAEVAEILKVSQSTIYLWESGKGKINEEQLRSLALLFGCTVNDLNGIN 61 Query: 78 PTVCSDISSEENNVMDF 94 P + +N F Sbjct: 62 PNKLTGNFIVDNFPKIF 78 >gi|330977318|gb|EGH77271.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 182 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 39/91 (42%), Gaps = 2/91 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R + G+SQ +L + G+T + EK S L+ + + + FF Sbjct: 4 GERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVEFFS 63 Query: 76 VS--PTVCSDISSEENNVMDFISTPDGLQLN 104 P + + + + ++D ++L Sbjct: 64 EESVPENAAQVVYKASELIDISDGAVTMKLV 94 >gi|327184359|gb|AEA32806.1| hypothetical protein LAB52_09520 [Lactobacillus amylovorus GRL 1118] Length = 94 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ ++I R SQE+L E L ++ Q V K+E G ++ ++ +S + + + Sbjct: 1 MNLNQKITQLRNDNNWSQEELAEKLNVSRQSVSKWESGQSKPDLDKIVVLSNIFDVSTDY 60 Query: 73 FFDV 76 Sbjct: 61 LLKD 64 >gi|297539828|ref|YP_003675597.1| XRE family transcriptional regulator [Methylotenera sp. 301] gi|297259175|gb|ADI31020.1| transcriptional regulator, XRE family [Methylotenera sp. 301] Length = 76 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N + G RI+ R+ G+SQE+LG + + E+G+ V ++ ++ L Sbjct: 1 MSNSILKVFGARIKSIRLEKGLSQEQLGLIAELDRTYISGIERGLRNVSLINIERLALAL 60 Query: 67 ESPISFFFDVSPTV 80 + S + Sbjct: 61 NIEPAELLKFSESD 74 >gi|291550787|emb|CBL27049.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 127 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 9/114 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I + +R R +Q ++G+ L IT Q YE GV L +S + + + Sbjct: 3 NIQLADNLRRLRKQYNYTQAQIGKKLHITHQAYSNYETGVREPNLQLLAELSWIYHTSVD 62 Query: 72 FFFDVSPTVCSDISSEENNV---------MDFISTPDGLQLNRYFIQIDDVKVR 116 + S E N D + T + + L + + + + Sbjct: 63 SLITQYCNAKNPSSVEVKNYFCIKIENSENDILLTKNEVNLLLKYRSAGEAERK 116 >gi|258510225|ref|YP_003183659.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476951|gb|ACV57270.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 106 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+R+R R + M+Q L LG++ + E+G + A + I+ L + Sbjct: 5 GRRLRAFRKLKHMTQADLARALGVSLATIGGIERGTRQPTAHLVSAIASALSVDVEEL 62 >gi|237736495|ref|ZP_04566976.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] gi|229421537|gb|EEO36584.1| transcriptional regulator [Fusobacterium mortiferum ATCC 9817] Length = 187 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 49/100 (49%), Gaps = 2/100 (2%) Query: 7 IPNPV-DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + N + D+ +GK+I+ R+ ++ ++L E +G+T + + E+ + + L+ IS+ Sbjct: 1 MKNDILDLGLGKKIQNYRLNKKLTIKELSEKIGMTSSMLSQIERDLVNPSIATLRAISKA 60 Query: 66 LESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 L+ P+ FF + + ++ ++ + +L Sbjct: 61 LDVPLFMFFKEENNEELVVRANSRKSIGLPENNEVRYELL 100 >gi|228904543|ref|ZP_04068626.1| Transcriptional repressor [Bacillus thuringiensis IBL 4222] gi|228855107|gb|EEM99683.1| Transcriptional repressor [Bacillus thuringiensis IBL 4222] Length = 112 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 32/92 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R G + E + L ++ YE + L +++V S F Sbjct: 1 MDIGGNLKFLRKRYGWTTEHVANQLEVSISTYNGYEINYRKPNPEMLCKLADVFNSTTDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + ++ + + G +L Sbjct: 61 ILGRIDNPDGSKDNLQDILENGTLNYGGRELT 92 >gi|228918433|ref|ZP_04081881.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841238|gb|EEM86432.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 142 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 31/84 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++Q++L E +G++ + + YE L +++ + Sbjct: 1 MIGVRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSVSADYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 + T + + D Sbjct: 61 LGRAVTDETKKQLTPKDEKDIAKR 84 >gi|227431793|ref|ZP_03913820.1| possible transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352476|gb|EEJ42675.1| possible transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 64 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 7/63 (11%), Positives = 21/63 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R+ ++ + + GI YE G + + + +++ + Sbjct: 2 NRLKELRLERELTLKYMELGTGIKRSTYSDYENGKSEPKLATWEILADYFNVTPQYLVGW 61 Query: 77 SPT 79 Sbjct: 62 VDE 64 >gi|218290643|ref|ZP_03494734.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239308|gb|EED06506.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 106 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+R+R R + M+Q L LG++ + E+G + A + I+ L + Sbjct: 5 GRRLRAFRKLKHMTQADLARALGVSLATIGGIERGTRQPTAHLVSAIASALSVDVEEL 62 >gi|206601889|gb|EDZ38371.1| Putative transcriptional regulator, XRE family [Leptospirillum sp. Group II '5-way CG'] Length = 121 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 44/112 (39%), Gaps = 8/112 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R MSQ E LGI +++ ++E G L +S + + + + Sbjct: 16 LGARIRHLRG--NMSQTAFAELLGIRQEEISRFESGSRVPSVELLVRLSGIHKVTLDWLV 73 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + EE+ + P +L F Q+ + R ++ + + Sbjct: 74 MGGTSGGEGSVREEDTPL-----PQEKKLLDRFRQLG-RRDRSLVLTIADRL 119 >gi|24380321|ref|NP_722276.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|24378337|gb|AAN59582.1|AE015021_3 putative transcriptional regulator [Streptococcus mutans UA159] Length = 81 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 29/76 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R I +SQ +L + L +T Q + EKG I++ + I F Sbjct: 4 RIQELRKINKLSQSELADALSVTRQTIISLEKGRYNASLELAYKIAKYFGTTIEDVFIFE 63 Query: 78 PTVCSDISSEENNVMD 93 D ++ + Sbjct: 64 DENRGDGNNVSKFRKE 79 >gi|114049377|ref|YP_739927.1| XRE family transcriptional regulator [Shewanella sp. MR-7] gi|113890819|gb|ABI44870.1| transcriptional regulator, XRE family [Shewanella sp. MR-7] Length = 107 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 9/105 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPI 70 + R++ R G +Q +LG +G+ + YEKG + L+ ++ L P+ Sbjct: 6 IPNRLKQARKQAGYTQMQLGVMIGMDEGSASGRMNHYEKGRHTPDIRTLKKMANALGVPL 65 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 ++FF DIS+E + +D +S L ++ ++ Sbjct: 66 NYFFCED-----DISAELSIQIDRLSPEKKQMLLQFINELQQENH 105 >gi|322375562|ref|ZP_08050074.1| putative transcriptional repressor [Streptococcus sp. C300] gi|321279270|gb|EFX56311.1| putative transcriptional repressor [Streptococcus sp. C300] Length = 69 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R+ L ++Q L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVELDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 78 PTVC 81 Sbjct: 66 EDEK 69 >gi|315163418|gb|EFU07435.1| helix-turn-helix protein [Enterococcus faecalis TX0645] Length = 78 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R G SQ +L + + +T Q V ++ G +++ +SE+L PI+ F Sbjct: 12 SNLSRYRKEKGFSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPINELFSD 71 >gi|312130932|ref|YP_003998272.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM 17132] gi|311907478|gb|ADQ17919.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM 17132] Length = 120 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 6/115 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +IR+ R + G+SQE + + L I+ YE ++ ++ I+ VL Sbjct: 3 GAKIRMIREMRGLSQENVADELDISQSTYSLYESDKIKITGEMIEKIASVLNVSPLDIMS 62 Query: 76 VSP-----TVCSDISSEENNVMDFISTPDGL-QLNRYFIQIDDVKVRQKIIELVR 124 P N+ + STP L + ++++ I +L+ Sbjct: 63 HQPVIINFQSNKGTQQAIGNIETYTSTPKELYDEMLAAKNAEIERLQKIIEKLIE 117 >gi|296393462|ref|YP_003658346.1| hypothetical protein Srot_1042 [Segniliparus rotundus DSM 44985] gi|296180609|gb|ADG97515.1| helix-turn-helix domain protein [Segniliparus rotundus DSM 44985] Length = 188 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 29/166 (17%) Query: 1 MVGNKKIP---NPVDINVGKRIRLRRMILGMSQEKLGEC-----LGITFQQVQKYEKGVN 52 M P + D VG+RI+ R GMSQ L + L + Q + + E+G Sbjct: 1 MSEETVYPWEIDDFDALVGRRIKALRTACGMSQTALVDELAQRGLNLPQQTIVRIEQGAR 60 Query: 53 RVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDF--------ISTPDGLQLN 104 + S + L P+ +E F S + Sbjct: 61 SLKFSEATAFASALRVPLEVLQAQDSEASDSWINEHVAFSAFQEAVKDAVASIKGAEEKM 120 Query: 105 RYFIQIDDVKVRQKIIELV-----------RSIVSSEKKYRTIEEE 139 + + + + R+ I L + +++K+R EE Sbjct: 121 KAWSEASEEHGRE--IGLHVFGWIPSTDDDERLKDADRKHRLRLEE 164 >gi|325678257|ref|ZP_08157885.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110020|gb|EGC04208.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 254 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 27/56 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR R G+SQE L + +T Q V ++EKG L+ +S + + I+ Sbjct: 7 IRELRTKAGLSQEDLANKVYVTRQAVSRWEKGETVPSTDTLKLLSALFDVSINTIL 62 >gi|293401673|ref|ZP_06645815.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304931|gb|EFE46178.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 67 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R++ R +SQ + + L I+ + YE G + L +++ + I + + Sbjct: 5 RLKNLREDHDLSQSDIAKYLNISQRTYSYYETGGRDIPIQILIKLADYYNTSIDYLVN 62 >gi|229114819|ref|ZP_04244233.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-3] gi|228668884|gb|EEL24312.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock1-3] Length = 107 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE 87 + + SE Sbjct: 61 LLHDETEKEAHLDSE 75 >gi|229105641|ref|ZP_04236274.1| hypothetical protein bcere0019_47690 [Bacillus cereus Rock3-28] gi|229118501|ref|ZP_04247855.1| hypothetical protein bcere0017_47680 [Bacillus cereus Rock1-3] gi|228665071|gb|EEL20559.1| hypothetical protein bcere0017_47680 [Bacillus cereus Rock1-3] gi|228677777|gb|EEL32021.1| hypothetical protein bcere0019_47690 [Bacillus cereus Rock3-28] Length = 79 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAKIFNVPVE 65 Query: 72 FFFDVSPTVCSDIS 85 F + D Sbjct: 66 EIFTLVEGEEDDEE 79 >gi|268591074|ref|ZP_06125295.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291313881|gb|EFE54334.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 106 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 32/67 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ +G+ +R R ++ E+L + L I+ QQ+ +YE G ++ + I + Sbjct: 6 NEINKEIGQYLRGIRKERNLTGEELAKRLNISQQQISRYETGKTKLTFEMMDTILLIFNK 65 Query: 69 PISFFFD 75 F+ Sbjct: 66 SWRDLFN 72 >gi|225019632|ref|ZP_03708824.1| hypothetical protein CLOSTMETH_03585 [Clostridium methylpentosum DSM 5476] gi|224947599|gb|EEG28808.1| hypothetical protein CLOSTMETH_03585 [Clostridium methylpentosum DSM 5476] Length = 120 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 23/62 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G+ I+ R G+S+ +L + L I + + E + L+ + Sbjct: 11 KAFGQAIKEARKAKGISRNQLADRLNIAPRYIASIENSGQHPSLQIFYELVTFLDVSVDQ 70 Query: 73 FF 74 FF Sbjct: 71 FF 72 >gi|218885897|ref|YP_002435218.1| XRE family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756851|gb|ACL07750.1| transcriptional regulator, XRE family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 101 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 31/89 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G IR R LG SQE+L E + + + E+G + + I++ + Sbjct: 13 MALGTAIRQFREALGWSQEQLAERVELHRTYIGGVERGERNLCLLNILVIAKAMGMSPGR 72 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 D + + + D Sbjct: 73 LIDRAFPDHAASTPHIPAAATPEDESDDC 101 >gi|209809535|ref|YP_002265073.1| putative DNA-binding protein [Aliivibrio salmonicida LFI1238] gi|208011097|emb|CAQ81517.1| putative DNA-binding protein [Aliivibrio salmonicida LFI1238] Length = 215 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR++ R+ LG++ E+ + G+ + K E LQ ++ L+ I F Sbjct: 36 LGKRLKDIRIQLGLTLEEASKRTGLARSTLSKIENEQISPTFQALQKLASGLDIDIPQIF 95 Query: 75 D 75 + Sbjct: 96 E 96 >gi|169351319|ref|ZP_02868257.1| hypothetical protein CLOSPI_02099 [Clostridium spiroforme DSM 1552] gi|169291541|gb|EDS73674.1| hypothetical protein CLOSPI_02099 [Clostridium spiroforme DSM 1552] Length = 212 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL+ + Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNEL 69 Query: 74 FDVS 77 Sbjct: 70 LSGE 73 >gi|167924589|ref|ZP_02511680.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei BCC215] Length = 74 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 24/69 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R G SQEKL G+ V E+G + + ++E L S Sbjct: 3 GKRLVELRKAKGWSQEKLALESGLARSYVGGIERGQRNIALYNICVLAETLNVAPSDMLA 62 Query: 76 VSPTVCSDI 84 Sbjct: 63 FDVEPVKAT 71 >gi|146305289|ref|YP_001185754.1| XRE family transcriptional regulator [Pseudomonas mendocina ymp] gi|145573490|gb|ABP83022.1| transcriptional regulator, XRE family [Pseudomonas mendocina ymp] Length = 182 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLGGIPMSLVE 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF D+ + + + + D S ++L Sbjct: 61 FFSLDLEQENQTQVVYRASELTDICSGAITMKLI 94 >gi|152986025|ref|YP_001346033.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150961183|gb|ABR83208.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 184 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 35/89 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R R GM+ + L + + + V + E+G++R L IS+VL P ++F Sbjct: 10 QIASLVRELRKRKGMTLQALADGIRRSVGFVSQVERGLSRPAVDDLVAISQVLGVPATYF 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQ 102 F T S + + Sbjct: 70 FCSPKTQASPWVTRPDERRTLAYARGASD 98 >gi|89899047|ref|YP_521518.1| transcriptional regulator [Rhodoferax ferrireducens T118] gi|89343784|gb|ABD67987.1| transcriptional regulator, XRE family with cupin sensor domain [Rhodoferax ferrireducens T118] Length = 197 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 34/64 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R RR I G++ +L + G++ + + E+G++ + I L P+S+ F Sbjct: 16 LGMQVRQRRRIKGLTLTELSQQSGLSVGLLSQIERGLSSPSLKSMTQICTALGVPLSWLF 75 Query: 75 DVSP 78 D P Sbjct: 76 DNGP 79 >gi|83720757|ref|YP_443247.1| helix-turn-helix domain-containing protein [Burkholderia thailandensis E264] gi|83654582|gb|ABC38645.1| Helix-turn-helix domain protein, putative [Burkholderia thailandensis E264] Length = 115 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 50/117 (42%), Gaps = 16/117 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VGK I RR ++QE + E LG+ + + + E+G+ +RL +++V + ++ Sbjct: 11 RRVGKAIARRREESQLTQEDVAEQLGVGNEAISRIERGIVMPTVARLVQLAKVFQCNVAD 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + D + + ++ +S + R+ ++ +V ++ + Sbjct: 71 LLTEASHRPDDQARHLSQLLTKLS----------------PQDRETLVSIVETLAAR 111 >gi|82702660|ref|YP_412226.1| XRE family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82410725|gb|ABB74834.1| transcriptional regulator, XRE family [Nitrosospira multiformis ATCC 25196] Length = 189 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 54/133 (40%), Gaps = 3/133 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ + IR R L ++Q +L E +G++ Q VQ++E G + RL I+EVL+ P + Sbjct: 6 MDIARIIREGREKLKLNQSELAELVGVSPQAVQQWESGATQPRGKRLNKIAEVLKLPPAM 65 Query: 73 F---FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + D + T ++ + +++E +R + Sbjct: 66 MHFGMSLEVPAAPDAAVSRQPENPGRGTRGTSPRVTEKPVSENDALINQVVEAMRRMSKE 125 Query: 130 EKKYRTIEEECMV 142 + + +V Sbjct: 126 DAARLVTISKALV 138 >gi|125974048|ref|YP_001037958.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125714273|gb|ABN52765.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] Length = 374 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 31/74 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ + I R G++QE + +G++ V K+E G + + L ++ + I Sbjct: 4 INIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDE 63 Query: 73 FFDVSPTVCSDISS 86 P + + Sbjct: 64 LMGYEPQMSKEDIR 77 >gi|331700580|ref|YP_004397539.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329127923|gb|AEB72476.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 74 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 30/65 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NV ++I+ R + ++Q+++G L ++ + + +E G + L + + + + Sbjct: 1 MNVSQKIQYCRTLRNLTQDEVGNLLHVSRKTISGWETGRSSPDILSLVKLCNLFDISLDD 60 Query: 73 FFDVS 77 Sbjct: 61 LLRDE 65 >gi|325168260|ref|YP_004277301.1| XRE family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325052939|dbj|BAJ83272.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 73 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R+ G +QE+L E G+ + E+G +G L I+ L P + Sbjct: 10 GRKVKQLRLAKGWTQEELAEHTGLHPTYIGGVERGERNLGLDNLLKIARALGEPPAALLL 69 Query: 76 VSP 78 P Sbjct: 70 DFP 72 >gi|256397327|ref|YP_003118891.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363553|gb|ACU77050.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 165 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 48/122 (39%), Gaps = 4/122 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR +R S +L + G++ + + E+G+ + A LQ +++ L + Sbjct: 14 LGEYIREQRRNAEYSVRQLAQAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETLY 73 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + +E+ D G++ + + ++ ++++ + + Sbjct: 74 VRAGLLDGGADVDEDAATDG----HGVRSAVADDPWLNARQKRALLDIYEAFRIESARDA 129 Query: 135 TI 136 Sbjct: 130 AA 131 >gi|199597287|ref|ZP_03210718.1| Predicted transcriptional regulator [Lactobacillus rhamnosus HN001] gi|229551796|ref|ZP_04440521.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258507943|ref|YP_003170694.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|258539196|ref|YP_003173695.1| transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|199591803|gb|EDY99878.1| Predicted transcriptional regulator [Lactobacillus rhamnosus HN001] gi|229314850|gb|EEN80823.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257147870|emb|CAR86843.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|257150872|emb|CAR89844.1| Transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|259649270|dbj|BAI41432.1| putative transcriptional regulator [Lactobacillus rhamnosus GG] Length = 62 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +IR R ++Q++L + + +T Q + E S ++ L++ + F Sbjct: 3 NKIRTLRTQQHLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALARQLQTTVDHLF 60 >gi|218781614|ref|YP_002432932.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218762998|gb|ACL05464.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 184 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK N I+ G+RI R M E L G+ ++K E G N L Sbjct: 1 MPPKKKAKN---ISTGQRIHDLRKDKDMDLETLANETGLAVDTLEKIESGENMPSVGSLL 57 Query: 61 HISEVLESPISFFFDVS 77 I+ LE +FF + Sbjct: 58 QIARALEVDSAFFLEKE 74 >gi|154503786|ref|ZP_02040846.1| hypothetical protein RUMGNA_01610 [Ruminococcus gnavus ATCC 29149] gi|153795886|gb|EDN78306.1| hypothetical protein RUMGNA_01610 [Ruminococcus gnavus ATCC 29149] Length = 262 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 8/121 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR RR L +S+ +L + +T + YE GV+ L + L+ ++ Sbjct: 1 MKIGNQIRHRRTELNLSRGELANKIQVTPSAIANYENGVSYPKPDILVALMNALDVDANY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK---VRQKIIELVRSIVSS 129 + +S + + +P+ + + ++ + VR I E + + S Sbjct: 61 LYW-----NYLSNSTIQRLYRKVLSPEEKESILKYRELSENGKSLVRLIIDEEYKRMNQS 115 Query: 130 E 130 E Sbjct: 116 E 116 >gi|148643588|ref|YP_001274101.1| HTH XRE-like family transcriptional regulator [Methanobrevibacter smithii ATCC 35061] gi|148552605|gb|ABQ87733.1| predicted transcriptional regulator, HTH XRE-like family [Methanobrevibacter smithii ATCC 35061] Length = 115 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 42/107 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + VG+R+ R +G+SQ+ L E L I+ + + G + + L + + Sbjct: 5 NKIVGERMEFLRENMGVSQKNLAEYLDISQPYLSQIAAGKRPMSLTILDKLCALFGCSEQ 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + + + + + +D +N+ + + + +QK Sbjct: 65 YLLGLDDSFHPKSYAFRSKKIDVADLKCIASINKLYKNLKYLHKKQK 111 >gi|254249607|ref|ZP_04942927.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] gi|124876108|gb|EAY66098.1| conserved hypothetical protein [Burkholderia cenocepacia PC184] Length = 195 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 30/79 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L + G+T + K E+G++ + +S+ L + F S Sbjct: 19 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLFSES 78 Query: 78 PTVCSDISSEENNVMDFIS 96 + + Sbjct: 79 RNRELITVTRAGERTAMGA 97 >gi|153004833|ref|YP_001379158.1| XRE family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028406|gb|ABS26174.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. Fw109-5] Length = 112 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 3/80 (3%) Query: 1 MVGNKKIPNPVDINV---GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 M K +P + G+R+R +R G++QE L E L ++ V E+G + Sbjct: 33 MAKTKSQRDPRRDELRRFGERVREQRRTRGLTQEALAEALDLSVAYVSLIERGGRNPPYT 92 Query: 58 RLQHISEVLESPISFFFDVS 77 + I+ L P S Sbjct: 93 TVVAIARALGIPASSIVADD 112 >gi|119946356|ref|YP_944036.1| DNA-binding transcriptional regulator [Psychromonas ingrahamii 37] gi|119864960|gb|ABM04437.1| predicted DNA-binding transcriptional regulator, helix-turn-helix domain [Psychromonas ingrahamii 37] Length = 208 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ R G++ E+ + G+ + K E +Q ++ L+ + Sbjct: 27 VKLGERLKEIRKSFGLTLEEASKKTGLARSTLSKIENEQISPTFQAMQKLTRGLQIDLPQ 86 Query: 73 FF 74 F Sbjct: 87 LF 88 >gi|78060929|ref|YP_370837.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968814|gb|ABB10193.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 180 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 30/79 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L + G+T + K E+G++ + +S+ L + F S Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLFSES 63 Query: 78 PTVCSDISSEENNVMDFIS 96 + + Sbjct: 64 HNRELITVTRAGERTAMGA 82 >gi|99081351|ref|YP_613505.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99037631|gb|ABF64243.1| transcriptional regulator, XRE family [Ruegeria sp. TM1040] Length = 443 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 32/81 (39%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P D G RIR RRM+LG+ Q L GI+ + E R+G L +++VL Sbjct: 2 PGDSLTGSRIRERRMMLGLRQADLARDAGISASYLNLIEHNRRRIGGKLLVTLAQVLGVE 61 Query: 70 ISFFFDVSPTVCSDISSEENN 90 S + E Sbjct: 62 PSLLTEGVEATLVASLREAAA 82 >gi|15641970|ref|NP_231602.1| transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121590656|ref|ZP_01677990.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 2740-80] gi|121728635|ref|ZP_01681654.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V52] gi|147674892|ref|YP_001217496.1| transcriptional regulator [Vibrio cholerae O395] gi|153217017|ref|ZP_01950781.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587] gi|153801860|ref|ZP_01956446.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-3] gi|153819310|ref|ZP_01971977.1| transcriptional regulator, HTH_3 family [Vibrio cholerae NCTC 8457] gi|153822466|ref|ZP_01975133.1| transcriptional regulator, HTH_3 family [Vibrio cholerae B33] gi|227082095|ref|YP_002810646.1| transcriptional regulator, HTH_3 family [Vibrio cholerae M66-2] gi|229507941|ref|ZP_04397446.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae BX 330286] gi|229511823|ref|ZP_04401302.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae B33] gi|229515349|ref|ZP_04404809.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TMA 21] gi|229518960|ref|ZP_04408403.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae RC9] gi|229607486|ref|YP_002878134.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae MJ-1236] gi|254849056|ref|ZP_05238406.1| transcriptional regulator [Vibrio cholerae MO10] gi|255745280|ref|ZP_05419229.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholera CIRS 101] gi|262156005|ref|ZP_06029125.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae INDRE 91/1] gi|262167921|ref|ZP_06035621.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae RC27] gi|298497998|ref|ZP_07007805.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9656508|gb|AAF95116.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121547499|gb|EAX57605.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 2740-80] gi|121629098|gb|EAX61543.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V52] gi|124113941|gb|EAY32761.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587] gi|124122632|gb|EAY41375.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-3] gi|126510130|gb|EAZ72724.1| transcriptional regulator, HTH_3 family [Vibrio cholerae NCTC 8457] gi|126520042|gb|EAZ77265.1| transcriptional regulator, HTH_3 family [Vibrio cholerae B33] gi|146316775|gb|ABQ21314.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O395] gi|227009983|gb|ACP06195.1| transcriptional regulator, HTH_3 family [Vibrio cholerae M66-2] gi|227013865|gb|ACP10075.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O395] gi|229343649|gb|EEO08624.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae RC9] gi|229348054|gb|EEO13013.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae TMA 21] gi|229351788|gb|EEO16729.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae B33] gi|229355446|gb|EEO20367.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae BX 330286] gi|229370141|gb|ACQ60564.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae MJ-1236] gi|254844761|gb|EET23175.1| transcriptional regulator [Vibrio cholerae MO10] gi|255737110|gb|EET92506.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholera CIRS 101] gi|262023648|gb|EEY42349.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae RC27] gi|262030183|gb|EEY48827.1| transcriptional regulator YidN, Cro/CI family [Vibrio cholerae INDRE 91/1] gi|297542331|gb|EFH78381.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 181 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 38/84 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 9 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 F P + S S +++ I T Sbjct: 69 FANDPQLLSSERSFPDDLNMKIHT 92 >gi|330976223|gb|EGH76285.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 193 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 1/109 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M PV +V + +R R +SQ L E G++ + + E G V + L Sbjct: 5 MHKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLD 64 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++E LE S +P E I+ + L R + Sbjct: 65 RVAEALEVAFSDLIQ-APENHDYSRINELAWAGTIAGSKAVLLARAVAR 112 >gi|325830940|ref|ZP_08164293.1| putative transcriptional regulator, PvuIIC [Eggerthella sp. HGA1] gi|325487102|gb|EGC89547.1| putative transcriptional regulator, PvuIIC [Eggerthella sp. HGA1] Length = 77 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + ++ + + + G RI+ R G+SQ +G++ + E+G V ++ Sbjct: 1 MPEHGRM-STIRVQYGLRIKDLRDERGLSQRGFAARIGMSPTYLADVERGARNVSIDNMK 59 Query: 61 HISEVLESPISFFFDVSP 78 I++ + Sbjct: 60 RIADGFGVTFHEMTEGME 77 >gi|304395275|ref|ZP_07377159.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304357528|gb|EFM21891.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 192 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 1/94 (1%) Query: 1 MVGN-KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+ + ++I +G +++ R G S L G++ + K E+G + A L Sbjct: 1 MLDEMSSKEDSLNIRIGLKVKDERERRGWSLTDLAGHSGVSRAMIHKIERGESSPTAVLL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 +S + IS + + EN + Sbjct: 61 ARLSGSFDMSISQLLAQTEVQTGTLVRHENQPVW 94 >gi|281492427|ref|YP_003354407.1| phage XRE family regulator [Lactococcus lactis subsp. lactis KF147] gi|281376091|gb|ADA65582.1| Phage protein, regulator, Xre family [Lactococcus lactis subsp. lactis KF147] Length = 228 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 52/138 (37%), Gaps = 7/138 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEV 65 + N V + RI+ R+ G++Q + + +GI+ + YE G ++ +++ Sbjct: 1 MANEVYKAL-NRIKELRIEKGVTQSTVAKAIGISQGMLTNYETGKRSPRDFKVWQDLADY 59 Query: 66 LESPISFFFDVSP--TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII--- 120 + S+ S T +I+ + + + ++ + + + Sbjct: 60 FDVTTSYIMGTSDFRTYQDEINEIQTSAKENYGVEVPAEIIKDYKGNPVSTTYNTLALRT 119 Query: 121 ELVRSIVSSEKKYRTIEE 138 E+ + ++ K + + Sbjct: 120 EMAKKLLPELDKMISTID 137 >gi|217970536|ref|YP_002355770.1| XRE family transcriptional regulator [Thauera sp. MZ1T] gi|217507863|gb|ACK54874.1| transcriptional regulator, XRE family [Thauera sp. MZ1T] Length = 85 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 2/82 (2%) Query: 7 IPNPVDINV--GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 + + D V GK + R G SQE L G+ + E+G + + ++ Sbjct: 1 MTSSSDPRVLFGKHLAELRRSRGWSQEYLALESGLARSYLGGVERGQRNIALLNIIRLAN 60 Query: 65 VLESPISFFFDVSPTVCSDISS 86 LE P S + ++S Sbjct: 61 ALELPPSKLLEFEDRNGGRVAS 82 >gi|170699135|ref|ZP_02890189.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170135930|gb|EDT04204.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 108 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 44/117 (37%), Gaps = 25/117 (21%) Query: 17 KRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R+ G++QE+LG GI +V +YEKG + Q ++ L P SF Sbjct: 13 QRLKQARLRSGLTQEQLGIQAGIDEFSASARVNQYEKGKHTPTVQTSQRLARALLVPTSF 72 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 ++ + S L ++ K R ++ ++ Sbjct: 73 LYEEDDLLAS--------------------LLAIAGRLSKEKKR-ALVASAEALAQE 108 >gi|206974896|ref|ZP_03235811.1| DNA-binding protein [Bacillus cereus H3081.97] gi|206746915|gb|EDZ58307.1| DNA-binding protein [Bacillus cereus H3081.97] Length = 403 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + ++ + ++ L Sbjct: 63 EEDEGKIVELIQKMEPLIKANGDEVYKTLL 92 >gi|156934075|ref|YP_001437991.1| hypothetical protein ESA_01901 [Cronobacter sakazakii ATCC BAA-894] gi|156532329|gb|ABU77155.1| hypothetical protein ESA_01901 [Cronobacter sakazakii ATCC BAA-894] Length = 191 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 39/94 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ +G+RIR+ R G S +L E G++ + K E+G + A+ L +S L Sbjct: 6 DTLNQRIGERIRVERETRGWSLSELAERAGVSRAMIHKIERGESSPTATLLGRLSGALGL 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 +S + + + + L+ Sbjct: 66 SMSTLIARAEMNEGRLLRFADQPVWHDPQSHYLR 99 >gi|118588049|ref|ZP_01545459.1| DNA binding protein, putative [Stappia aggregata IAM 12614] gi|118439671|gb|EAV46302.1| DNA binding protein, putative [Stappia aggregata IAM 12614] Length = 186 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 2/115 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + + R++ R G+S E + + G++ V + E+G + + L +++ L Sbjct: 4 SDILSRLPARLKKARRAQGLSLEAVEKLSGVSRSMVSQIERGESNPTVATLLNLTRALNV 63 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + D + G + R +I EL+ Sbjct: 64 DFAGLLG--EETAEDRVEIVHEHQTPALDRAGDGCRIRILSPPQDTGRFEIYELI 116 >gi|145594859|ref|YP_001159156.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145304196|gb|ABP54778.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 203 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 2/106 (1%) Query: 4 NKKIPN-PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N K+ + + VG + R GMS L I+ + E+G S L + Sbjct: 17 NTKVVHMDLARTVGSNVHRLRNTAGMSLADLATAGDISKTTLHGIEQGHGNPTLSTLWAL 76 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + L P+ + +PT +D+ ++ +L Sbjct: 77 ATALRVPLGELLE-TPTPRTDVVRADDQRPRISGDAVSARLLHRIR 121 >gi|71279897|ref|YP_269962.1| DNA-binding protein [Colwellia psychrerythraea 34H] gi|71145637|gb|AAZ26110.1| DNA-binding protein [Colwellia psychrerythraea 34H] Length = 179 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 10/78 (12%), Positives = 28/78 (35%), Gaps = 4/78 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + NP+ + I+ R ++Q KL + I + E + + + +++ L Sbjct: 1 MSNPIS----EGIKRLRAQHKLTQTKLADMADIPRATLANMESEQSNPSITLVVKVAQAL 56 Query: 67 ESPISFFFDVSPTVCSDI 84 + +++ Sbjct: 57 GVSVDDLISRQSAHVTEV 74 >gi|46906563|ref|YP_012952.1| transcriptional activator [Listeria monocytogenes serotype 4b str. F2365] gi|47091462|ref|ZP_00229259.1| transcriptional activator, putative [Listeria monocytogenes str. 4b H7858] gi|226222952|ref|YP_002757059.1| transcriptional regulator [Listeria monocytogenes Clip81459] gi|254932554|ref|ZP_05265913.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|254992837|ref|ZP_05275027.1| transcriptional regulator [Listeria monocytogenes FSL J2-064] gi|46879828|gb|AAT03129.1| putative transcriptional activator [Listeria monocytogenes serotype 4b str. F2365] gi|47020139|gb|EAL10875.1| transcriptional activator, putative [Listeria monocytogenes str. 4b H7858] gi|225875414|emb|CAS04111.1| Putative transcriptional regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293584112|gb|EFF96144.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|332310745|gb|EGJ23840.1| Transcriptional activator [Listeria monocytogenes str. Scott A] Length = 300 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 11/113 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R+ G++Q+++ + I+ +EKG + + S + I + + P+ FF Sbjct: 5 GELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFF- 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY--------FIQIDDVKVRQKII 120 + +++ +DF+ + + + +VR+ I+ Sbjct: 63 -FIYRDFSSTEDDSFWIDFVELSGKNDVVGMQALLDKITLERTEQTEVRKAIL 114 >gi|332883135|gb|EGK03418.1| hypothetical protein HMPREF9456_01485 [Dysgonomonas mossii DSM 22836] Length = 184 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 29/71 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R++ R L M+ E+ GI +YE+G + S L++I+ +S Sbjct: 6 KQIGQRLKGLREALDMTTEEFASSCGIDPVVYLEYEEGRKDLTISTLKNIASKHNIDVSV 65 Query: 73 FFDVSPTVCSD 83 S Sbjct: 66 LMFADEPRMSS 76 >gi|297184582|gb|ADI20694.1| predicted transcriptional regulators [uncultured alpha proteobacterium EF100_94H03] Length = 204 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D +G RIR R G S ++ ++ + K EK L+ ++E Sbjct: 22 PLD--LGNRIRELRSEHGWSLDEAAAQTSLSRSSLFKIEKNRMSPTFDALRKLAEGFGLA 79 Query: 70 ISFF 73 ++ Sbjct: 80 MAEL 83 >gi|296284442|ref|ZP_06862440.1| transcriptional regulator, XRE family protein [Citromicrobium bathyomarinum JL354] Length = 86 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK I+ R+ G+SQE+L I + E+ L I+ VL I+ F Sbjct: 7 VGKNIKRLRVAQGISQEQLAFDASIDRSFLGGIERCDENPSVDTLDKIASVLSVNIAELF 66 >gi|254784460|ref|YP_003071888.1| DNA-binding protein [Teredinibacter turnerae T7901] gi|237686654|gb|ACR13918.1| DNA-binding protein [Teredinibacter turnerae T7901] Length = 185 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 19/56 (33%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R R G +Q+++ I E G S L ++ L+ I Sbjct: 13 NVRQLRSERGFTQQQMATLAQIPRPTWASIESGAANPTLSVLSKLANALQVSIEEL 68 >gi|255036105|ref|YP_003086726.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254948861|gb|ACT93561.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 279 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 1/84 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 G IR R ++QE E LG+T ++ E G A L IS+ I F Sbjct: 9 GSNIRFLRERRRLTQEDFAEQLGVTRVKLAAIEAGRTENPSAVDLIKISDFFGLSIDNLF 68 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + ++ E + Sbjct: 69 RIDLRGVGELPLRELEAGSPLYMK 92 >gi|223983971|ref|ZP_03634129.1| hypothetical protein HOLDEFILI_01410 [Holdemania filiformis DSM 12042] gi|223964047|gb|EEF68401.1| hypothetical protein HOLDEFILI_01410 [Holdemania filiformis DSM 12042] Length = 179 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 34/76 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G RI+ R ++ E+L +T + + E+ + + LQ I E L + ++ Sbjct: 1 MDIGYRIKQLRTKNNLTLEELASRCELTKGFLSQLERNLTSPSIATLQDIVEALGTTLAK 60 Query: 73 FFDVSPTVCSDISSEE 88 FF + ++ Sbjct: 61 FFQEETEEKLVFTDDD 76 >gi|113867108|ref|YP_725597.1| hypothetical protein H16_A1088 [Ralstonia eutropha H16] gi|113525884|emb|CAJ92229.1| conserved hypothetical protein [Ralstonia eutropha H16] Length = 146 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 1/101 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R G SQE L G++ + E G + + + ++E L P D Sbjct: 10 GLHLAWLRKQRGWSQETLSLESGLSRSYLSGIESGKRNLALANICRLAETLAVPTPEMLD 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQL-NRYFIQIDDVKV 115 S S + E++ ++ R+ ++ + ++ Sbjct: 70 FSRHDASQLQVEQSRAPFGNRQRAAIEATVRHMAELTEPEL 110 >gi|78186565|ref|YP_374608.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166467|gb|ABB23565.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 105 Score = 45.2 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K+ + +G+ IR R+ G S+EKL E G++ + E+G+ + Q Sbjct: 1 MTEIKRA--QAALRLGRNIRAARVKAGYSREKLSELSGLSTNYIGIIERGMKNITIINCQ 58 Query: 61 HISEVLESPISFFFDV 76 ++ L + I + Sbjct: 59 RLACALSTSIDKLLEG 74 >gi|319936190|ref|ZP_08010610.1| hypothetical protein HMPREF9488_01442 [Coprobacillus sp. 29_1] gi|319808764|gb|EFW05297.1| hypothetical protein HMPREF9488_01442 [Coprobacillus sp. 29_1] Length = 84 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 31/68 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+R++ R+ G+SQ ++ E L ++ V +YE +L S + + + Sbjct: 1 MSIGERLKTLRLEAGLSQRQVAETLKMSKPIVSQYESNQRTPSLGKLIRFSRFYNASLDY 60 Query: 73 FFDVSPTV 80 + Sbjct: 61 ICENVDEK 68 >gi|313899914|ref|ZP_07833417.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312955529|gb|EFR37194.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 69 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R L M+QE+L + ++ Q + EKG I+ + + I F Sbjct: 3 NRIRKLRQELQMTQEELAQRCRVSRQTIISLEKGKYDPSIHLAHRIATIFQHHIEDVFLF 62 Query: 77 SPTVCSD 83 + Sbjct: 63 TEGADES 69 >gi|300716279|ref|YP_003741082.1| regulatory protein [Erwinia billingiae Eb661] gi|299062115|emb|CAX59231.1| Regulatory protein [Erwinia billingiae Eb661] Length = 229 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 46/112 (41%), Gaps = 1/112 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR R M+ L +G + + E+GV + LQ +++ L PIS F Sbjct: 4 GERIRQLRKAKKMTLNALAMQVGSDVGNLSRLERGVQGYSDALLQKLADALAVPISALFS 63 Query: 76 VSPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + +++ + + + + +++++++RSI Sbjct: 64 SGELKNTGDLYSVSSLTEMGRDDVYRVDVLDVSASAGEGSPAREVVQVIRSI 115 >gi|291541918|emb|CBL15028.1| looped-hinge helix DNA binding domain, AbrB family [Ruminococcus bromii L2-63] Length = 136 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 53/131 (40%), Gaps = 11/131 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++ R G SQE L E L ++ Q V K+E + + ++++ E+ + Sbjct: 1 MIGMNLKYLRKKYGYSQEDLAERLEVSRQSVAKWENEESLPDVEKCVTMAQIFETTVEML 60 Query: 74 F------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + S + D + + +S + L ++ ++ ++ +++ L Sbjct: 61 LVCPFYEEESDALTPDGDGKYIFGIVKVSERGQITLPKHARKVFGIEAGDRLLVL----- 115 Query: 128 SSEKKYRTIEE 138 EKK + + Sbjct: 116 GDEKKGMALAK 126 >gi|291531478|emb|CBK97063.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 380 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 39/97 (40%), Gaps = 1/97 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N + + +G+ ++ R+ ++QE+L + LG++ Q V ++E G + L Sbjct: 4 TEENTMLN-LGLKLGENLKKFRLQRELTQEQLADVLGVSAQAVSRWENGTTYPDITLLPT 62 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 I E + + + E ++ + Sbjct: 63 IVSYFEITLDELMGMENWRSEEQLKELLGQLEENGSK 99 >gi|242240962|ref|YP_002989143.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242133019|gb|ACS87321.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 189 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 2/85 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N+ + +D+ + +R+ R G S ++L I+ + + E+G A+ L Sbjct: 1 MENR--LSDIDLRLSERLSALRRERGWSLDELALNSDISRATLSRMERGETSPTAALLGR 58 Query: 62 ISEVLESPISFFFDVSPTVCSDISS 86 + V +S T Sbjct: 59 LCVVYGCTMSRLLAEVETPSPQKLE 83 >gi|315499433|ref|YP_004088236.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] gi|315417445|gb|ADU14085.1| helix-turn-helix domain protein [Asticcacaulis excentricus CB 48] Length = 99 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 1/69 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRLQHISEVLES 68 V+ VG + R G+SQ +L I Q + K E G ++E L Sbjct: 2 DVEALVGLNVARLRTERGLSQLELALRCEILTQGYISKLEAGKRNPTVVIQYLLAEALGV 61 Query: 69 PISFFFDVS 77 + F Sbjct: 62 EVGALFSRE 70 >gi|269792208|ref|YP_003317112.1| transcriptional regulator, XRE family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099843|gb|ACZ18830.1| transcriptional regulator, XRE family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 117 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 57/124 (45%), Gaps = 8/124 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R+++ R G++Q+ L + + ++ +Q E R L+ ++E L+ ++ Sbjct: 1 MSLGMRVKVLRRAKGLTQQGLADTVNVSRVYIQSIESNRRRPSMDLLERLAEALDVTVAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS-EK 131 SP + EE + +++ ++ +V ++I LV +I+ ++ Sbjct: 61 LVKDSPGDGKRMQLEE------VLASGQVEVWYRSRKLSPREV-KRINRLVETILEEWDE 113 Query: 132 KYRT 135 + + Sbjct: 114 EDQE 117 >gi|228998574|ref|ZP_04158161.1| hypothetical protein bmyco0003_31350 [Bacillus mycoides Rock3-17] gi|228761042|gb|EEM10001.1| hypothetical protein bmyco0003_31350 [Bacillus mycoides Rock3-17] Length = 143 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 31/86 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R + ++Q+ L + + T + YE G + L+ ++ +L + Sbjct: 3 ERLKEARKMRKLTQQGLADKVNATKGTISNYENGHSTPSNEMLKDLANILGVTTDYLLGR 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 + E D L+ Sbjct: 63 DDELGPSNQLPELTKKDTRDIARDLE 88 >gi|227874818|ref|ZP_03992971.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|306818111|ref|ZP_07451842.1| transcriptional regulator [Mobiluncus mulieris ATCC 35239] gi|227844593|gb|EEJ54749.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|304649075|gb|EFM46369.1| transcriptional regulator [Mobiluncus mulieris ATCC 35239] Length = 69 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +I R +SQE+LG +G+T Q + E G I+ I FD Sbjct: 4 KIPQLRKERKLSQEELGTAVGVTRQTITSIETGKYVASLPLAYKIAHYFGRTIEDVFD 61 >gi|213031120|emb|CAR31457.1| hypothetical protein [Streptococcus pneumoniae] Length = 227 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 29/56 (51%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ +R G+SQ +L LGI+ +E G + + L +SE+L + +F Sbjct: 6 KLKRKRESQGLSQSQLASSLGISRASYFNWESGKTKPNQNNLSKLSEILNVDLRYF 61 >gi|209517814|ref|ZP_03266649.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209501760|gb|EEA01781.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 211 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 30/74 (40%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K + ++G+R+R R ++ E G++ + K E G+ LQ I Sbjct: 6 TKSADTSSTDLGRRVRAARQAQDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVL 65 Query: 65 VLESPISFFFDVSP 78 L+ I F +P Sbjct: 66 GLKIEIGELFGSTP 79 >gi|170016495|ref|YP_001727414.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169803352|gb|ACA81970.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 131 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 40/89 (44%), Gaps = 1/89 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FDV 76 +++ R G+SQE + L ++ Q + ++E G + L ++E+LE+ + Sbjct: 8 QLKRMRTERGLSQEDIANQLFVSRQAISRWESGDATPDLTNLVKLAEILETSLDSLVLGT 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNR 105 + + ++ + +F+ P + R Sbjct: 68 VQQEETAVDVDKIDKHEFMFDPRTGKYIR 96 >gi|217959269|ref|YP_002337817.1| DNA-binding protein [Bacillus cereus AH187] gi|217068137|gb|ACJ82387.1| DNA-binding protein [Bacillus cereus AH187] Length = 403 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + ++ + ++ L Sbjct: 63 EEDEGKIVELIQKMEPLIKANGDEVYKTLL 92 >gi|170725490|ref|YP_001759516.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810837|gb|ACA85421.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 182 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 33/72 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R I G+SQ +L + G+T + EK S L+ + L + Sbjct: 1 MDIGASLKAVRKIKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVD 60 Query: 73 FFDVSPTVCSDI 84 FF + T S+ Sbjct: 61 FFSMEDTAASEA 72 >gi|297157260|gb|ADI06972.1| hypothetical protein SBI_03851 [Streptomyces bingchenggensis BCW-1] Length = 293 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 34/108 (31%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + P+ +G +R R G+S ++ L ++ E G V +RL Sbjct: 1 MAPRSEPSERQRRLGAELRKLRNRAGLSGDQAAVILEADRARISNIEAGRIDVSRNRLYK 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + P FD + + + + L L + Sbjct: 61 LLREYGCPQGPLFDGLMEMAQERGKGWWDEFRDVMGRSVLDLAELESR 108 >gi|291530986|emb|CBK96571.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] gi|291551031|emb|CBL27293.1| Predicted transcriptional regulators [Ruminococcus torques L2-14] gi|295104178|emb|CBL01722.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 118 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 36/77 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 1 MPIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVL 60 Query: 67 ESPISFFFDVSPTVCSD 83 + + ++ + Sbjct: 61 HISLDTLINPDISLEDE 77 >gi|255012031|ref|ZP_05284157.1| DNA-binding protein [Bacteroides fragilis 3_1_12] gi|313149871|ref|ZP_07812064.1| predicted protein [Bacteroides fragilis 3_1_12] gi|313138638|gb|EFR55998.1| predicted protein [Bacteroides fragilis 3_1_12] Length = 72 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R+R R G+SQEKL E G+ + E+ + I+ L ++ F Sbjct: 15 QRVRTLREAQGISQEKLAERAGLHRTYIGMVERLERNPSLVCIHKIANGLGVHVTELF 72 >gi|213023224|ref|ZP_03337671.1| hypothetical protein Salmonelentericaenterica_11800 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 132 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 3/129 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ G++Q +LG +G T Q V + + L+ + + P+ +FF Sbjct: 2 GERLQRVLNETGITQSELGRRVGATSQSVNGWCQSGILPRKDILELLPKATGKPLYWFFM 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV-RSIVSSEKKYR 134 ++ +L F Q+ V+ + + IEL + + Sbjct: 62 EDDDESDVPERLTQGGPTDLNDRQ-KRLLEIFDQLPTVE-QDRFIELAGTRLQELDDFMA 119 Query: 135 TIEEECMVE 143 + +E Sbjct: 120 EYQRRRKIE 128 >gi|239617008|ref|YP_002940330.1| transcriptional regulator, XRE family [Kosmotoga olearia TBF 19.5.1] gi|239505839|gb|ACR79326.1| transcriptional regulator, XRE family [Kosmotoga olearia TBF 19.5.1] Length = 69 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 19 IRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R+ G ++QE+L +G+T Q + EKG I++VL + F++ Sbjct: 5 IKKVRITKGEITQEELARRVGVTRQTIIYIEKGKFNPSVKLALKIAKVLGCSVEELFELE 64 Query: 78 PTV 80 Sbjct: 65 EGD 67 >gi|149019378|ref|ZP_01834740.1| hypothetical protein CGSSp23BS72_05475 [Streptococcus pneumoniae SP23-BS72] gi|147931248|gb|EDK82227.1| hypothetical protein CGSSp23BS72_05475 [Streptococcus pneumoniae SP23-BS72] Length = 69 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R+ ++Q +L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRYLGKTLDQLFWEE 65 Query: 78 PTVC 81 Sbjct: 66 EDEK 69 >gi|170728642|ref|YP_001762668.1| XRE family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813989|gb|ACA88573.1| transcriptional regulator, XRE family [Shewanella woodyi ATCC 51908] Length = 181 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 4/69 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + NP++ + I+ R ++Q +L E GI + E + S + +++ L Sbjct: 1 MANPIN----EGIKRLRAQHKLTQIELAEMAGIPRATLANMESSNSNPSISVVMKVAQAL 56 Query: 67 ESPISFFFD 75 + Sbjct: 57 GVTVDDLIT 65 >gi|28870201|ref|NP_792820.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213970618|ref|ZP_03398744.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|28853447|gb|AAO56515.1| DNA-binding protein, putative [Pseudomonas syringae pv. tomato str. DC3000] gi|213924615|gb|EEB58184.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] Length = 120 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 12/115 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R LGMSQ GE G+ KYE G A L ++ + + Sbjct: 4 IGCRLREERERLGMSQRTFGEIGGVEANAQGKYENGDRAPKADYLAAVAAK-GVDVLYVL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 T + + ++ + + + I L +I Sbjct: 63 TGKRTPVPIDNLSVIE-----------ETILGNYRVLEKEDQDAIRRLTTTIAEL 106 >gi|322385351|ref|ZP_08058996.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321270610|gb|EFX53525.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 227 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 42/110 (38%), Gaps = 10/110 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ +R G+SQ +L LGI+ +E G + + L +S++L +F Sbjct: 6 KLKEKRESQGLSQSQLASSLGISRASYFNWESGKTKPNQNNLTKLSQILNVDPRYF---- 61 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + E ++ + Y + + + K++E+ Sbjct: 62 -----ESEYEIVETYLKLTEKNQKATLHYAKDLLNNQN-SKVVEVSERFA 105 >gi|289449377|ref|YP_003475735.1| Xre family toxin-antitoxin system antitoxin protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289183924|gb|ADC90349.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 128 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 26/61 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++R R + ++Q +L E L I+ + + YE L I +S+ D Sbjct: 4 GEKLRELRRLNHITQAELAEELKISLRALVYYENNHRFPPRDTLVAIGNFFHVNVSYLVD 63 Query: 76 V 76 Sbjct: 64 D 64 >gi|257077759|ref|ZP_05572120.1| predicted protein [Enterococcus faecalis JH1] gi|256985789|gb|EEU73091.1| predicted protein [Enterococcus faecalis JH1] Length = 268 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 42 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 101 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + ++ + ++ Sbjct: 102 WLLYGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMGRLSEEQL 143 >gi|228929407|ref|ZP_04092428.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229198488|ref|ZP_04325192.1| Transcriptional regulator, MerR [Bacillus cereus m1293] gi|228584991|gb|EEK43105.1| Transcriptional regulator, MerR [Bacillus cereus m1293] gi|228830195|gb|EEM75811.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 194 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 14 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 73 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + E + ++ Sbjct: 74 LLLEQKDRLKVVKKVERKYSVYGKDEQRIEHV 105 >gi|268592470|ref|ZP_06126691.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] gi|291311872|gb|EFE52325.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] Length = 354 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 29/59 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R++ R G+S ++L G++ ++KYE + + L +S L +FF Sbjct: 3 GERLKRARSAAGLSMKELSLRAGVSANMIKKYEHDESMPSSGVLIKMSRALGVRNEYFF 61 >gi|212711747|ref|ZP_03319875.1| hypothetical protein PROVALCAL_02822 [Providencia alcalifaciens DSM 30120] gi|212685849|gb|EEB45377.1| hypothetical protein PROVALCAL_02822 [Providencia alcalifaciens DSM 30120] Length = 107 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +K+ + I R +S +LG +G++ QQ+ +YE G+ + S L + Sbjct: 7 EKMTESFSQAIADEIASLRRKRLLSGSQLGSLIGVSQQQISRYENGICEITLSTLCLLLH 66 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 L + FF E + + G Sbjct: 67 YLGVSLESFFFFVSERIEANEPELYGEFNLLFEQHG 102 >gi|163784885|ref|ZP_02179654.1| hypothetical protein HG1285_00035 [Hydrogenivirga sp. 128-5-R1-1] gi|159879846|gb|EDP73581.1| hypothetical protein HG1285_00035 [Hydrogenivirga sp. 128-5-R1-1] Length = 128 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 5/82 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IR R LG++QE+ + LG+ F V ++E G + L+ + + + + Sbjct: 3 GKEIRELRKKLGLTQEEFAQLLGVGFTTVNRWENGKSEPRGQALEALEK-----LRTLIE 57 Query: 76 VSPTVCSDISSEENNVMDFIST 97 + + ++ I + Sbjct: 58 EAEEGKDFTIEDLKEILKDIES 79 >gi|119899299|ref|YP_934512.1| putative DNA binding helix-turn helix protein [Azoarcus sp. BH72] gi|119671712|emb|CAL95625.1| putative DNA binding helix-turn helix protein [Azoarcus sp. BH72] Length = 200 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 2/85 (2%) Query: 2 VGN--KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 + N +K ++ +VG IR R+ G++ ++ E GI+ + K E G G L Sbjct: 1 MENLTEKSAPVLEESVGAVIRELRLKEGLTIAQVAELAGISRGMLSKIETGSTMAGMDTL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDI 84 I+ L +S F + Sbjct: 61 ARIARSLGVAMSALFSRYDATTASA 85 >gi|114769621|ref|ZP_01447231.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255] gi|114549326|gb|EAU52208.1| DNA-binding protein, putative [alpha proteobacterium HTCC2255] Length = 190 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 36/72 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ +L E +G + + + E+ ++ + L+ +++ + P+S FF Sbjct: 12 LGVDLRALRKSRGITLTELSEKMGRSVGWLSQVERDISSPTINELRQLAKEFQVPLSLFF 71 Query: 75 DVSPTVCSDISS 86 + +++ Sbjct: 72 GSTEAKANEVGK 83 >gi|86739571|ref|YP_479971.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566433|gb|ABD10242.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 497 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 4/118 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLES 68 P + VG+ +R R G++Q++L + LG V K E G + S L+HI+ L Sbjct: 15 PTSVGVGQLLRAYRQAHGLTQQQLADRLGFDQSYVSKVESGRRAIHDISTLRHIARNLAL 74 Query: 69 PISFFF---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + ++ +L R + + + + + L Sbjct: 75 SPEDVGLAPGSMTDRRRETAPRSPAAEQAAASQRAWRLTRDHLNHHRISLARAAVRLY 132 >gi|148253455|ref|YP_001238040.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405628|gb|ABQ34134.1| transcriptional regulator [Bradyrhizobium sp. BTAi1] Length = 225 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R R L ++ +LG GI+ + K E G + L +++ L PI+ Sbjct: 41 EIGAEVRRLRKDLDLTVSELGAAAGISAGMLSKIENGSISPSLATLSALAKALNVPIARL 100 Query: 74 FDVSPTVCS 82 F + Sbjct: 101 FRENGEERD 109 >gi|75762080|ref|ZP_00741987.1| Transcriptional repressor [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490433|gb|EAO53742.1| Transcriptional repressor [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 95 Score = 44.8 bits (104), Expect = 0.003, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 33/91 (36%), Gaps = 2/91 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R G + E + L ++ YE + L +++V S F Sbjct: 1 MDIGGNLKFLRKRYGWTTEHVANQLEVSISTYNGYEINYRKPNPEMLCKLADVFNSTTDF 60 Query: 73 FFD--VSPTVCSDISSEENNVMDFISTPDGL 101 +P D + + ++ + L Sbjct: 61 ILGRIDNPDGSKDNLQDILETVHYMVEENLL 91 >gi|312126546|ref|YP_003991420.1| XRE family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311776565|gb|ADQ06051.1| transcriptional regulator, XRE family [Caldicellulosiruptor hydrothermalis 108] Length = 145 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 9/142 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N + +G +I+ R G + +L G+ + + E+G + + L I++ L Sbjct: 3 KKNKIARTLGLKIKKLREEKGWTINQLALYAGVNPTSIMRAERGESELSLGNLLRIAKAL 62 Query: 67 ESPISFFFDVS----PTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKII 120 + ++ + S ++ EE + I N F I + V+Q I+ Sbjct: 63 KVDLNTLVEESMGQIKLGDEELVPEEKDKTPDIYEIIKKAENLNFKGIPVNEPDVKQAIV 122 Query: 121 ELVR---SIVSSEKKYRTIEEE 139 E + + + EK+ E E Sbjct: 123 EAITFAIRLKAKEKRQENKEIE 144 >gi|283851802|ref|ZP_06369079.1| transcriptional regulator, XRE family [Desulfovibrio sp. FW1012B] gi|283572718|gb|EFC20701.1| transcriptional regulator, XRE family [Desulfovibrio sp. FW1012B] Length = 186 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 33/103 (32%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R + G S E L E G++ QV +YE G + S L +++ ++ Sbjct: 9 REIAMRLRGIREVTGFSAEALAEATGVSPAQVLQYETGETEIPVSYLYEVAKACGVDLTA 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 S + + + + Sbjct: 69 LLTGDEAHLLAYSLVPAGQGLSVDRRKAYKYQALAYRFHKPSM 111 >gi|262402586|ref|ZP_06079147.1| putative transcriptional regulator [Vibrio sp. RC586] gi|262351368|gb|EEZ00501.1| putative transcriptional regulator [Vibrio sp. RC586] Length = 102 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 9/102 (8%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLE 67 D + R++ R G++Q+ LG +G+ + YEKG + L+ ++E L Sbjct: 4 DNPIPTRLKEARKKAGITQKDLGIRIGMEPSSASGRMNHYEKGRHVPDLGTLERMAEELN 63 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 P+++FF +++S+E V+D +S + L + Sbjct: 64 VPLNYFF-----CRNELSAELACVIDKMSDEEKAALLDSLSR 100 >gi|228956235|ref|ZP_04118111.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228803444|gb|EEM50187.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 105 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 7/111 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R L M Q +L + +G+ + + YE +++I+ V + Sbjct: 2 GSRIKEVRKSLKMKQNELADAVGVNYTMISLYESNKREPSRETVENIARVTNVSADYIMG 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +S D + + D + + Q+ K R KII ++ + Sbjct: 62 LSKHKTFDEETSKKITDDVE------DIMKRINQLPADK-RSKIINMINDL 105 >gi|54298059|ref|YP_124428.1| hypothetical protein lpp2116 [Legionella pneumophila str. Paris] gi|53751844|emb|CAH13268.1| hypothetical protein lpp2116 [Legionella pneumophila str. Paris] Length = 86 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G +IR R G SQE L + + + E+G + L I+ +L + Sbjct: 9 IKIGDQIRTIRSSKGFSQEGLAAAATLGRTYMGRVERGEQNISIQNLIKIAFILNVNVGE 68 Query: 73 F 73 Sbjct: 69 L 69 >gi|88858936|ref|ZP_01133577.1| Transcriptional regulator [Pseudoalteromonas tunicata D2] gi|88819162|gb|EAR28976.1| Transcriptional regulator [Pseudoalteromonas tunicata D2] Length = 119 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 38/78 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++R R+ +SQ+ L + L I+ Q +Q +E+G N +R+ ++E+L P+ + S Sbjct: 11 KLRKARLEKDLSQQNLADHLKISVQSIQHWERGANTPKLARMNQLAEILSVPVEYLMIQS 70 Query: 78 PTVCSDISSEENNVMDFI 95 + + + + Sbjct: 71 NETENVQHTAGKKIPQIL 88 >gi|86144456|ref|ZP_01062788.1| predicted transcriptional regulator [Vibrio sp. MED222] gi|85837355|gb|EAQ55467.1| predicted transcriptional regulator [Vibrio sp. MED222] Length = 505 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 26/80 (32%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G L+ I++V Sbjct: 13 FLGTKIRNLRKRNHLTMEDLSARCIRINPEYAPSVSYLSMIERGKRVPSIDMLEVIAQVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + ++F D + Sbjct: 73 QKNPTWFLDDESEQQAIAPD 92 >gi|330812572|ref|YP_004357034.1| XRE family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380680|gb|AEA72030.1| putative transcription regulator, Xre family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 182 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVE 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF ++ + I + N ++D ++L Sbjct: 61 FFSEEILQEKPTQIVYKANELIDISDGAVTMKLV 94 >gi|296110846|ref|YP_003621227.1| hypothetical protein LKI_03580 [Leuconostoc kimchii IMSNU 11154] gi|295832377|gb|ADG40258.1| hypothetical protein LKI_03580 [Leuconostoc kimchii IMSNU 11154] Length = 296 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 31/66 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ L R +SQE L + L ++ Q V K+E G ++L ++E+L ++F Sbjct: 7 SQLSLLRQKKNLSQEALAQKLYVSRQSVSKWEHGDAEPDIAKLISLAEILAVDLNFLLSG 66 Query: 77 SPTVCS 82 + Sbjct: 67 QQSNED 72 >gi|260432343|ref|ZP_05786314.1| DNA-binding protein [Silicibacter lacuscaerulensis ITI-1157] gi|260416171|gb|EEX09430.1| DNA-binding protein [Silicibacter lacuscaerulensis ITI-1157] Length = 198 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G++ + L + + + E+ ++ S L+ I+E L P+S F Sbjct: 20 LGADIRALRKSRGLTLTDVARRLDRSVGWLSQVERDLSEPSISDLRQIAECLGVPMSMLF 79 >gi|229070989|ref|ZP_04204216.1| transcriptional regulator, XRE [Bacillus cereus F65185] gi|228712171|gb|EEL64119.1| transcriptional regulator, XRE [Bacillus cereus F65185] Length = 108 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 4/103 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G IR R G++Q++L L ++ + YE+ + + L I++ F Sbjct: 5 GNIIRDLRKQKGITQKELALSLKLSESTIGMYERNERQPDYNTLIRIADYFNVSTDFLLG 64 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 F+V + + N + + +L R++ I + Sbjct: 65 RDFNVKEGRNNKELDQWLNDIKLAPSQKREELKRFWNFIMQEE 107 >gi|257791706|ref|YP_003182312.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257475603|gb|ACV55923.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 73 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 11 VDINVGKRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V VG R++ R G+SQEK +G+ E+G + V L+ I++ + Sbjct: 6 VQKQVGVRLKALRKEKTGLSQEKFAYSIGVDRAYYAHIEQGRHGVSIVMLKKIADGMGIG 65 Query: 70 ISFFFDVS 77 + F Sbjct: 66 LEEMFKGM 73 >gi|229815066|ref|ZP_04445403.1| hypothetical protein COLINT_02107 [Collinsella intestinalis DSM 13280] gi|229809296|gb|EEP45061.1| hypothetical protein COLINT_02107 [Collinsella intestinalis DSM 13280] Length = 391 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 30/71 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R M+QE+L LG++ Q V K+E + +L + ++ E + Sbjct: 6 NLQYLRAERRMTQEQLAMLLGVSRQSVTKWEAEKSYPEMDKLIKMCQIFECSLDDLVQGD 65 Query: 78 PTVCSDISSEE 88 + S ++ Sbjct: 66 VSRHGVPSRDD 76 >gi|254286899|ref|ZP_04961851.1| transcriptional regulator, HTH_3 family [Vibrio cholerae AM-19226] gi|150423049|gb|EDN14998.1| transcriptional regulator, HTH_3 family [Vibrio cholerae AM-19226] Length = 181 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 38/84 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 9 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 68 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 F P + S S +++ I T Sbjct: 69 FANDPQLLSSERSFPDDLNMKIHT 92 >gi|91780754|ref|YP_555961.1| transcriptional regulator [Burkholderia xenovorans LB400] gi|91693414|gb|ABE36611.1| Transcriptional regulator, XRE family with Cupin sensor domain [Burkholderia xenovorans LB400] Length = 204 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R+ G+S +L G++ V + E+ L+ + + LE P++ Sbjct: 19 VGARLRALRVAQGLSVNELAMRAGVSVGTVSQVERNKANPSVRILERLRQALEVPLTALL 78 Query: 75 DVSPTVCSDISSE 87 + V I+ + Sbjct: 79 EEDDAVSDPITGD 91 >gi|38703909|ref|NP_309096.2| regulatory protein [Escherichia coli O157:H7 str. Sakai] gi|195935171|ref|ZP_03080553.1| putative regulatory protein [Escherichia coli O157:H7 str. EC4024] gi|260854273|ref|YP_003228164.1| putative phage repressor protein [Escherichia coli O26:H11 str. 11368] gi|261225700|ref|ZP_05939981.1| putative regulatory protein [Escherichia coli O157:H7 str. FRIK2000] gi|261254659|ref|ZP_05947192.1| putative phage repressor protein [Escherichia coli O157:H7 str. FRIK966] gi|257752922|dbj|BAI24424.1| predicted phage repressor protein [Escherichia coli O26:H11 str. 11368] Length = 133 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 13/124 (10%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI G SQ +L +G+T Q VQ++ G AS L + EV P+ +F Sbjct: 11 RISKLLQETGWSQAELARRIGVTQQTVQQWVSGKATPKASSLDKLVEVSGHPLHWFL--- 67 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 + + + P +L + F + ++ K + Sbjct: 68 --LPPEECEQIFTPDTMKIGPRQRELLQAFSAFPEEDQ--------EKMLQEIKDKKKSM 117 Query: 138 EECM 141 EE + Sbjct: 118 EETI 121 >gi|19745476|ref|NP_606612.1| hypothetical protein spyM18_0360 [Streptococcus pyogenes MGAS8232] gi|19747592|gb|AAL97111.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232] Length = 112 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/80 (13%), Positives = 26/80 (32%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R LG++Q + + +E + +++ I+ ++ Sbjct: 4 RIKYLRQALGLTQSAFAAKAHVHKNMIANHESQNSNPSLKQIEKIALAFNVEPAWLAGWD 63 Query: 78 PTVCSDISSEENNVMDFIST 97 I + V D + Sbjct: 64 TKPQIVIKEKVVRVQDPSAR 83 >gi|147671814|ref|YP_001215344.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|147673183|ref|YP_001217016.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|147673763|ref|YP_001217013.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|153824168|ref|ZP_01976835.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae B33] gi|229508578|ref|ZP_04398081.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae BX 330286] gi|254226669|ref|ZP_04920247.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae V51] gi|254226678|ref|ZP_04920256.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae V51] gi|262166856|ref|ZP_06034579.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae RC27] gi|262166979|ref|ZP_06034698.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae RC27] gi|298498461|ref|ZP_07008268.1| cryptic phage CTXphi transcriptional repressor rstR [Vibrio cholerae MAK 757] gi|11134457|sp|O85264|RSR2_VIBCH RecName: Full=Cryptic phage CTXphi transcriptional repressor rstR gi|6851391|gb|AAF29541.1|AF220606_1 RstR [Vibrio cholerae] gi|11559577|gb|AAG38011.1|AF262318_2 RstR classical [Vibrio phage CTX] gi|21637281|gb|AAM70434.1|AF510999_1 RstR [Vibrio phage CTX] gi|3252903|gb|AAC24223.1| repressor [Vibrio cholerae 569B] gi|34980245|gb|AAQ84035.1| RstR [Vibrio cholerae] gi|66268071|gb|AAY43122.1| RstR [Vibrio phage CTX] gi|125620783|gb|EAZ49139.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae V51] gi|125620792|gb|EAZ49148.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae V51] gi|126518308|gb|EAZ75533.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae B33] gi|146314197|gb|ABQ18737.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|146315066|gb|ABQ19605.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|146315646|gb|ABQ20185.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae O395] gi|221236971|gb|ACM16038.1| RstR [Vibrio phage CTX] gi|221236983|gb|ACM16045.1| RstR [Vibrio phage CTX] gi|221236998|gb|ACM16055.1| RstR [Vibrio phage CTX] gi|227013372|gb|ACP09582.1| cryptic phage CTXphi transcriptional repressor RstR, classical [Vibrio cholerae O395] gi|227013375|gb|ACP09585.1| cryptic phage CTXphi transcriptional repressor RstR, classical [Vibrio cholerae O395] gi|227015379|gb|ACP11588.1| cryptic phage CTXphi transcriptional repressor RstR, classical [Vibrio cholerae O395] gi|229354532|gb|EEO19455.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae BX 330286] gi|258523312|gb|ACV73677.1| RstR [Vibrio phage CTX] gi|259046014|gb|ACV91462.1| RstR [Vibrio phage CTX] gi|259046023|gb|ACV91471.1| RstR [Vibrio phage CTX] gi|259046033|gb|ACV91480.1| RstR [Vibrio phage CTX] gi|259046042|gb|ACV91489.1| RstR [Vibrio phage CTX] gi|259046052|gb|ACV91498.1| RstR [Vibrio phage CTX] gi|259046061|gb|ACV91507.1| RstR [Vibrio phage CTX] gi|259046071|gb|ACV91516.1| RstR [Vibrio phage CTX] gi|259046080|gb|ACV91525.1| RstR [Vibrio phage CTX] gi|259046090|gb|ACV91534.1| RstR [Vibrio phage CTX] gi|259046099|gb|ACV91543.1| RstR [Vibrio phage CTX] gi|259046109|gb|ACV91552.1| RstR [Vibrio phage CTX] gi|259046118|gb|ACV91561.1| RstR [Vibrio phage CTX] gi|259130184|gb|ACV95535.1| RstR [Vibrio phage CTX] gi|259130202|gb|ACV95552.1| RstR [Vibrio phage CTX] gi|259130211|gb|ACV95561.1| RstR [Vibrio phage CTX] gi|259130221|gb|ACV95570.1| RstR [Vibrio phage CTX] gi|259130230|gb|ACV95579.1| RstR [Vibrio phage CTX] gi|259130246|gb|ACV95593.1| RstR [Vibrio phage CTX] gi|259130255|gb|ACV95602.1| RstR [Vibrio phage CTX] gi|262024620|gb|EEY43302.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae RC27] gi|262024719|gb|EEY43397.1| cryptic phage CTXphi transcriptional repressor RstR [Vibrio cholerae RC27] gi|297542794|gb|EFH78844.1| cryptic phage CTXphi transcriptional repressor rstR [Vibrio cholerae MAK 757] Length = 111 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 37/87 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +IR R+ ++QE++ +G+ YEKG ++ +++ PI+ Sbjct: 4 SKIRDLRVERDLNQEEVANGIGVGKNTYLAYEKGTQSPKLETVEKLAKFYGVPIAELVSD 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQL 103 S T + + +++ + P+ L Sbjct: 64 SETNIDEKLKSKIRMIESLDEPEKESL 90 >gi|328468682|gb|EGF39669.1| hypothetical protein AAULH_04674 [Lactobacillus helveticus MTCC 5463] Length = 222 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/126 (12%), Positives = 48/126 (38%), Gaps = 6/126 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+++ R+ LG++QE+ + +T + E +++ S L I + Sbjct: 1 MDIGKKLKSTRVFLGLTQEEFCAGI-VTESFYSRVENNKSKISMSDLISILNYHNISLYD 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF + D + ++ + + + + ++ +E + + Sbjct: 60 FFASADKTVHDKKRVMQSFINDDANR-----LKKYQHLLKPAQKKYQLEFKLMLSILNDQ 114 Query: 133 YRTIEE 138 + + Sbjct: 115 IGELPK 120 >gi|254472772|ref|ZP_05086171.1| DNA-binding protein [Pseudovibrio sp. JE062] gi|211958236|gb|EEA93437.1| DNA-binding protein [Pseudovibrio sp. JE062] Length = 185 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 33/69 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ R GM+ E+ + +G + + + E+ + + L+ +EV +S FF Sbjct: 7 LGEDLKALRTSRGMTLEETAKKMGRSVGWLSQVERDKSTPRHTDLKQFAEVFGVQLSLFF 66 Query: 75 DVSPTVCSD 83 + S+ Sbjct: 67 GHAEAPESE 75 >gi|170697588|ref|ZP_02888677.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170137475|gb|EDT05714.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 80 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PV + +G IR R MSQE+L + + + E+G N V RL+ I++ L Sbjct: 10 DPVLVALGHAIRRIRKERDMSQEQLALSAEVDMSYLGRVERGDNNVAVLRLKRIADALGM 69 Query: 69 PISFFFDVSP 78 ++ + Sbjct: 70 TMTELMSEAG 79 >gi|71734040|ref|YP_276442.1| RtrR protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554593|gb|AAZ33804.1| RtrR protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|115265594|dbj|BAF32856.1| RtrR protein [Pseudomonas syringae pv. actinidiae] gi|115265646|dbj|BAF32907.1| RtrR protein [Pseudomonas syringae pv. phaseolicola] gi|330966722|gb|EGH66982.1| RtrR protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 76 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G+RIR +R +SQ+ L I + + E+G + +L I+ VL Sbjct: 2 DKLAKALGRRIRTQRKACQISQDALALACNIDRSYMGRIERGEVNITVEKLYRIAGVLAC 61 Query: 69 PISFFF 74 S Sbjct: 62 DPSGLL 67 >gi|49482390|ref|YP_039614.1| DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|221140693|ref|ZP_03565186.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|257424286|ref|ZP_05600715.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257426962|ref|ZP_05603364.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257429600|ref|ZP_05605987.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257432247|ref|ZP_05608610.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257435206|ref|ZP_05611257.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|282902738|ref|ZP_06310631.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus C160] gi|282907140|ref|ZP_06314988.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282907482|ref|ZP_06315324.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912385|ref|ZP_06320181.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282913004|ref|ZP_06320796.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus M899] gi|282921420|ref|ZP_06329138.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282922631|ref|ZP_06330321.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|283959595|ref|ZP_06377036.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus A017934/97] gi|293498058|ref|ZP_06665912.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|293511647|ref|ZP_06670341.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M809] gi|293550257|ref|ZP_06672929.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus M1015] gi|295426693|ref|ZP_06819332.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589106|ref|ZP_06947747.1| transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|304380109|ref|ZP_07362829.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|49240519|emb|CAG39176.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257273304|gb|EEV05406.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257276593|gb|EEV08044.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257280081|gb|EEV10668.1| transcriptional regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257283126|gb|EEV13258.1| transcriptional regulator [Staphylococcus aureus subsp. aureus E1410] gi|257285802|gb|EEV15918.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|269939674|emb|CBI48042.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus TW20] gi|282314852|gb|EFB45238.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|282315835|gb|EFB46219.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282323104|gb|EFB53423.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus M899] gi|282324081|gb|EFB54397.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282328387|gb|EFB58658.1| transcriptional regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330039|gb|EFB59560.1| transcriptional regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282597197|gb|EFC02156.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus C160] gi|283789187|gb|EFC28014.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290919304|gb|EFD96380.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus M1015] gi|291096989|gb|EFE27247.1| DNA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|291465605|gb|EFF08137.1| transcriptional regulator [Staphylococcus aureus subsp. aureus M809] gi|295129145|gb|EFG58772.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577617|gb|EFH96330.1| transcriptional regulator [Staphylococcus aureus subsp. aureus MN8] gi|302750028|gb|ADL64205.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341090|gb|EFM07009.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436742|gb|ADQ75813.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315194604|gb|EFU24993.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus CGS00] Length = 391 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE +++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEINKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|85707180|ref|ZP_01038267.1| transcriptional regulator, putative [Roseovarius sp. 217] gi|85668339|gb|EAQ23213.1| transcriptional regulator, putative [Roseovarius sp. 217] Length = 436 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 50/135 (37%), Gaps = 10/135 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P+ + +G RIR RR++ G+ Q L + GI+ + E R+G L ++E L Sbjct: 1 MPDRL--MIGTRIRERRVLNGIRQSDLAQQAGISPSYLNLIEHNHRRIGGKTLLKLAEAL 58 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI------QIDDVKVRQKII 120 + S + E D + L F ++R++ Sbjct: 59 KVEPSQLTQGAEVTLISGLREAAGKPD--TDGPELDRIEEFAGRYPGWAGLLNELRRRNQ 116 Query: 121 ELVRSIVSSEKKYRT 135 L R+I + + Sbjct: 117 ALERTIETLTDRLAH 131 >gi|329312845|gb|AEB87258.1| Transcriptional regulator [Staphylococcus aureus subsp. aureus T0131] Length = 381 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE +++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEINKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|330501217|ref|YP_004378086.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] gi|328915503|gb|AEB56334.1| XRE family transcriptional regulator [Pseudomonas mendocina NK-01] Length = 182 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 33/72 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGVRLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLSGIPMSLVE 60 Query: 73 FFDVSPTVCSDI 84 FF + + I Sbjct: 61 FFSLDMEQENQI 72 >gi|322378022|ref|ZP_08052509.1| transcriptional regulator [Streptococcus sp. M334] gi|321281004|gb|EFX58017.1| transcriptional regulator [Streptococcus sp. M334] Length = 305 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +GKRIR R G+S+E + +T +Q+ + E G N ++L +I+++L PI Sbjct: 8 NLEIGKRIRTLRTEKGLSREAFCGDEKELTVRQLGRIETGNNLPSLAKLDYIAKILGVPI 67 Query: 71 SFFFDV 76 S D Sbjct: 68 SQLIDE 73 >gi|284045004|ref|YP_003395344.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949225|gb|ADB51969.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 196 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 29/83 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R + +S L E G++ + + E+G I+ L+ +S Sbjct: 11 AIGSRVRALREAMDLSLRDLAERSGVSAPMLSQVERGETSPTLQVATRIAHGLDLRLSQL 70 Query: 74 FDVSPTVCSDISSEENNVMDFIS 96 + I + S Sbjct: 71 LRLDEEGAVTIVRVQERRRGPSS 93 >gi|256957267|ref|ZP_05561438.1| predicted protein [Enterococcus faecalis DS5] gi|256947763|gb|EEU64395.1| predicted protein [Enterococcus faecalis DS5] Length = 269 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 43 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 102 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + ++ + ++ Sbjct: 103 WLLYGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMGRLSEEQL 144 >gi|258515819|ref|YP_003192041.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779524|gb|ACV63418.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 364 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 32/88 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I +R +QE+L +G++ V K+E G L I+ L + + Sbjct: 5 IGEVITAKRKEKLWTQEQLANAVGVSTPAVSKWETGTTYPDIMLLSPIARALNTTVDKLL 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ 102 + + + + +G Sbjct: 65 SYQNELSDEEVDKVTKDAMHVYESEGFD 92 >gi|269957018|ref|YP_003326807.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305699|gb|ACZ31249.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 190 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 39/110 (35%), Gaps = 2/110 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V NVG R+R R L ++ L E G+T + + E+ R +L ++ V Sbjct: 5 DDVLDNVGPRLRAFRQALRLTLSDLAEQTGLTSSTISRLERSQIRPTLEQLLPLARVYGV 64 Query: 69 PISFFFD--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 P+ + + + F+ + + I + R Sbjct: 65 PLDELVAAPAHGDPRVHLRPIRRDGLTFVPLGINRGQLQAYKVIYPPESR 114 >gi|297190002|ref|ZP_06907400.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718661|gb|EDY62569.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 209 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 2/91 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G + + GI+ + + E G + + + + + Sbjct: 14 GPRLRATREQRGATLAGISSATGISPSTLSRIETGRRKPTLEVVLRLVKEYGVSLDELAG 73 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 +P ++ + + F + L L RY Sbjct: 74 TAPVPAAEPRTSAP--LSFGDSKVVLPLTRY 102 >gi|158320616|ref|YP_001513123.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140815|gb|ABW19127.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 179 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 35/65 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++IR R++ ++Q++L + +T + K E+ + + L + E L + + Sbjct: 1 MDIGEKIRRLRLLNELTQDELAQRCDLTKGFISKIERNITSPSIATLMDLLEALGTDVKK 60 Query: 73 FFDVS 77 FF+ Sbjct: 61 FFNED 65 >gi|315924489|ref|ZP_07920710.1| prophage repressor [Pseudoramibacter alactolyticus ATCC 23263] gi|315622193|gb|EFV02153.1| prophage repressor [Pseudoramibacter alactolyticus ATCC 23263] Length = 223 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 10/109 (9%), Positives = 35/109 (32%), Gaps = 1/109 (0%) Query: 7 IPNPVDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + N + ++ G+R++ + L E ++ + +Y +G + + +++ Sbjct: 1 MSNSIHKSIFGQRLKQLMKNFNETTYSLSEQFNLSPPSISRYTRGEMAPKMTTVYALADY 60 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + + ++ + + RY I Sbjct: 61 FDVNPEWLMGKTVSMYESEILGDTHAAGHAFDISVFDEIRYDRPIFSNH 109 >gi|270264896|ref|ZP_06193160.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041194|gb|EFA14294.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 152 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 30/78 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R+ GMSQE + G + + E+G + ++ ++ L Sbjct: 8 GQRVKELRVATGMSQEAFADRCGFACSYMSRIERGGSNASLDAIEVLANALSVEPWQLLV 67 Query: 76 VSPTVCSDISSEENNVMD 93 + +D+ D Sbjct: 68 SDSSEDTDLELLVPYAAD 85 >gi|253581969|ref|ZP_04859193.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251836318|gb|EES64855.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 181 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + +R+R R G+ Q K+ E L I Q YE R+ L ++ I + Sbjct: 8 ITLAQRLRELREEKGLLQLKVAEALEIPRSSYQGYETASKRLSLEALDKLAFYFNVSIDY 67 Query: 73 FFDVSPTVCSDISSEENNV 91 + ++E Sbjct: 68 LLGRTDIRSPYPYNDEEFY 86 >gi|239932677|ref|ZP_04689630.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 181 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 9/108 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R ++ L E GI+ + + E G+ R L I++ + P+ Sbjct: 2 GPRLRRIRKEREVTLAALSEATGISVSTLSRLESGLRRPSLELLLPIAQAHQVPLDELVG 61 Query: 76 ----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 P V S ++ G + + + + R+K+ Sbjct: 62 APPVGDPRVRSKPIERYGRTHWPLTRQPGG--LQAYKVL---EPRRKL 104 >gi|227494440|ref|ZP_03924756.1| possible transcriptional regulator [Actinomyces coleocanis DSM 15436] gi|226832174|gb|EEH64557.1| possible transcriptional regulator [Actinomyces coleocanis DSM 15436] Length = 354 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 29/73 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G++QE+L LG++ Q + K+E +L I ++ + Sbjct: 29 ENLQHLRSTRGLTQERLAVLLGVSRQAISKWESDRAYPEMDKLLTICDLFGCTLDELVTG 88 Query: 77 SPTVCSDISSEEN 89 + E+ Sbjct: 89 DLRTTDADTLEDP 101 >gi|222095409|ref|YP_002529469.1| DNA-binding protein [Bacillus cereus Q1] gi|221239467|gb|ACM12177.1| DNA-binding protein [Bacillus cereus Q1] Length = 403 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + ++ + ++ L Sbjct: 63 EEDEGKIVELIQKMEPLIKANGDEVYKTLL 92 >gi|182683145|ref|YP_001834892.1| hypothetical protein SPCG_0175 [Streptococcus pneumoniae CGSP14] gi|182684300|ref|YP_001836047.1| hypothetical protein SPCG_1330 [Streptococcus pneumoniae CGSP14] gi|228477717|ref|ZP_04062346.1| helix-turn-helix domain protein [Streptococcus salivarius SK126] gi|309803232|ref|ZP_07697329.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|309808541|ref|ZP_07702439.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 01V1-a] gi|317495463|ref|ZP_07953831.1| hypothetical protein HMPREF0432_00433 [Gemella moribillum M424] gi|322392773|ref|ZP_08066231.1| hypothetical protein HMPREF9180_1621 [Streptococcus peroris ATCC 700780] gi|331267240|ref|YP_004326870.1| Tn916 conserved hypothetical protein; transcriptional regulator, putative [Streptococcus oralis Uo5] gi|182628479|gb|ACB89427.1| hypothetical protein SPCG_0175 [Streptococcus pneumoniae CGSP14] gi|182629634|gb|ACB90582.1| hypothetical protein SPCG_1330 [Streptococcus pneumoniae CGSP14] gi|228250606|gb|EEK09817.1| helix-turn-helix domain protein [Streptococcus salivarius SK126] gi|295980964|emb|CBJ57212.1| hypothetical protein [Streptococcus pneumoniae] gi|308164740|gb|EFO66990.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|308168218|gb|EFO70338.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 01V1-a] gi|316914277|gb|EFV35755.1| hypothetical protein HMPREF0432_00433 [Gemella moribillum M424] gi|321144351|gb|EFX39754.1| hypothetical protein HMPREF9180_1621 [Streptococcus peroris ATCC 700780] gi|326683912|emb|CBZ01530.1| Tn916 conserved hypothetical protein; transcriptional regulator, putative [Streptococcus oralis Uo5] Length = 79 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 1/71 (1%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D G I+ R+ G+++E++G + I + + E L + Sbjct: 2 RKKEDKYDFRAFGLAIKEARLKRGLTREQVGALIEIDPRYLTNIENKGQHPSIQVLYDLV 61 Query: 64 EVLESPISFFF 74 +L + FF Sbjct: 62 SLLHVSVDEFF 72 >gi|118587212|ref|ZP_01544640.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] gi|118432354|gb|EAV39092.1| transcriptional regulator, helix-turn-helix XRE-family [Oenococcus oeni ATCC BAA-1163] Length = 199 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R LGM+Q+++ E L ++ Q + +EKG N L +S++ + + Sbjct: 14 ISSKRRELGMTQDQVAELLHVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLDVLIKGDK 73 Query: 79 TVCSDISSEENN 90 V + + + Sbjct: 74 EVMKKVQEDSQD 85 >gi|114775570|ref|ZP_01451138.1| hypothetical protein SPV1_04558 [Mariprofundus ferrooxydans PV-1] gi|114553681|gb|EAU56062.1| hypothetical protein SPV1_04558 [Mariprofundus ferrooxydans PV-1] Length = 180 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G+SQ L E GI+ + + E G + L+ +++ L I+ FF Sbjct: 4 IGGTIRSLREQQGLSQRALAEAAGISAAALSQLEAGQTSPSVATLEKLADGLGIAIAAFF 63 Query: 75 DVSPTVCSDISSEENNVM 92 S + N Sbjct: 64 LDSGNPADIEIFDLNERP 81 >gi|32470379|ref|NP_863294.1| hypothetical protein MWP024 [Staphylococcus aureus] gi|49398102|ref|YP_031701.1| putative regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253730993|ref|ZP_04865158.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297208875|ref|ZP_06925281.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300913080|ref|ZP_07130516.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus TCH70] gi|21205830|dbj|BAB96521.1| truncated conserved hypothetical protein [Staphylococcus aureus] gi|49168433|emb|CAG43234.1| putative regulatory protein [Staphylococcus aureus subsp. aureus MSSA476] gi|253725270|gb|EES93999.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|270055309|gb|ACZ58802.1| hypothetical protein SAP032A_013 [Staphylococcus aureus] gi|270055397|gb|ACZ58890.1| hypothetical protein SAP037A_010 [Staphylococcus aureus] gi|270269036|gb|ACZ66028.1| hypothetical protein SAP111A_016 [Staphylococcus aureus] gi|270269153|gb|ACZ66145.1| hypothetical protein SAP043A_012 [Staphylococcus aureus] gi|270299957|gb|ACZ68763.1| hypothetical protein SAP072A_021 [Staphylococcus aureus] gi|281334960|gb|ADA62044.1| hypothetical protein SAP053A_001 [Staphylococcus aureus] gi|296886493|gb|EFH25420.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885633|gb|EFK80842.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus TCH70] gi|302334349|gb|ADL24541.1| putative bacteriophage CI repressor [Staphylococcus aureus subsp. aureus JKD6159] gi|304388021|gb|ADM29122.1| Transcriptional regulator, Cro/CI family [Staphylococcus aureus] Length = 113 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ +R + G SQE+L L ++ Q V K+E N L +S++ + Sbjct: 1 MKLAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEH 60 Query: 73 FFDVS 77 Sbjct: 61 LIKGD 65 >gi|332300885|ref|YP_004442806.1| helix-turn-helix domain protein [Porphyromonas asaccharolytica DSM 20707] gi|332177948|gb|AEE13638.1| helix-turn-helix domain protein [Porphyromonas asaccharolytica DSM 20707] Length = 355 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 15/116 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR R + GM+ +L + +G++ + E+G + + L +SE L+ PI +F Sbjct: 6 GERIRKGRALRGMTLRELADKVGVSHTHISNLERGGKEITGATLIALSEALDLPIDYFV- 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 I + + F +D K+ QKI + + + E+ Sbjct: 65 --------------YQDTPIIESVNFRKIKAFSSKEDKKIWQKIERQLENYLELEE 106 >gi|327490807|gb|EGF22588.1| hypothetical transcriptional regulator [Streptococcus sanguinis SK1058] Length = 231 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 49/122 (40%), Gaps = 26/122 (21%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ RR+ LG+ Q + E L ++ Q +EKG + L+ + +L+ P +F + Sbjct: 10 KLKNRRLKLGLRQVDIIEKLNVSKQAYSAWEKGKIKPSQDNLKKLETILKVPEGYFTE-- 67 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 L++ + +++ ++ I V ++ ++K Sbjct: 68 -----------------------LEIATLYKKLNKPNQQKAKI-YVEDLLETQKSKVQSI 103 Query: 138 EE 139 ++ Sbjct: 104 KK 105 >gi|322616176|gb|EFY13092.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620883|gb|EFY17742.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623026|gb|EFY19868.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322634721|gb|EFY31452.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638712|gb|EFY35407.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322649122|gb|EFY45563.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654501|gb|EFY50823.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660780|gb|EFY57013.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665118|gb|EFY61306.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667862|gb|EFY64022.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671726|gb|EFY67847.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677228|gb|EFY73292.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680109|gb|EFY76148.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685462|gb|EFY81458.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193671|gb|EFZ78875.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199978|gb|EFZ85066.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204709|gb|EFZ89706.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205725|gb|EFZ90688.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323216770|gb|EGA01494.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223035|gb|EGA07379.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225164|gb|EGA09411.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231914|gb|EGA16021.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234441|gb|EGA18528.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237892|gb|EGA21951.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243507|gb|EGA27526.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249504|gb|EGA33418.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254252|gb|EGA38070.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255077|gb|EGA38863.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261261|gb|EGA44849.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266626|gb|EGA50113.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271352|gb|EGA54778.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 110 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 12/86 (13%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGA 56 M IP +R++ R G+SQ LG +G ++ YEKG + Sbjct: 1 MSEKNPIP--------ERLKEARCRAGLSQRSLGLLVGFDPASASSRMNHYEKGRHVPDI 52 Query: 57 SRLQHISEVLESPISFFFDVSPTVCS 82 L+ ++ L P+++FF T Sbjct: 53 DTLRRMAAELNVPLNYFFCDDQTTAE 78 >gi|322384025|ref|ZP_08057752.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151372|gb|EFX44562.1| LexA repressor-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 210 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 4/86 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +KK + I R ++Q L + LG+ V +EK A ++ Sbjct: 1 MDDKK----IQEIFASNINKLRKSKSLTQSDLAKILGVGVSTVSDWEKAKKYPRAGVIEK 56 Query: 62 ISEVLESPISFFFDVSPTVCSDISSE 87 +S+ P S FF+V + E Sbjct: 57 LSQHFGIPKSNFFEVQGSATDLYEDE 82 >gi|297162420|gb|ADI12132.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 196 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 29/76 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R G++ ++L + ++ + E+G L I++ L P++ Sbjct: 7 LGTRVQGLRHERGLTLQQLADAAEVSVSMLSSVERGQKAPTVLVLARIADGLGVPLAELV 66 Query: 75 DVSPTVCSDISSEENN 90 + + Sbjct: 67 AEPEDSRVIVRRAADQ 82 >gi|256004475|ref|ZP_05429455.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|255991616|gb|EEU01718.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] Length = 376 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 31/74 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ + I R G++QE + +G++ V K+E G + + L ++ + I Sbjct: 6 INIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDE 65 Query: 73 FFDVSPTVCSDISS 86 P + + Sbjct: 66 LMGYEPQMSKEDIR 79 >gi|228987613|ref|ZP_04147727.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772073|gb|EEM20525.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 194 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 14 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 73 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + E + ++ Sbjct: 74 LLLEQKDRLKVVKKVERKYSVYGKDEQRIEHV 105 >gi|240147124|ref|ZP_04745725.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257200713|gb|EEU98997.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|291524691|emb|CBK90278.1| Helix-turn-helix [Eubacterium rectale DSM 17629] gi|291534496|emb|CBL07608.1| Helix-turn-helix [Roseburia intestinalis M50/1] gi|291539069|emb|CBL12180.1| Helix-turn-helix [Roseburia intestinalis XB6B4] Length = 111 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 3/110 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK ++I +GKR++ R G +QE E L + + +K E GV + ++ Sbjct: 1 MKAEKK---EINIQIGKRLQTARENSGYTQEVFAETLDVGVEHYRKIESGVYGLQPEKML 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + E ++ DI N ++ Y ++ Sbjct: 58 ILYEKYRIEPTYLVTGDTNHKVDIELFLANCSREERDAFIDRMLAYMRKL 107 >gi|167624221|ref|YP_001674515.1| XRE family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167354243|gb|ABZ76856.1| transcriptional regulator, XRE family [Shewanella halifaxensis HAW-EB4] Length = 511 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 7/92 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRV 54 + N + +G +IR R ++ E L + E+G Sbjct: 1 MKNNQSLIRKSHFLGTKIRNLRKRNHLTMEDLSARCVRVDPESAPSVSYLSMIERGKRVP 60 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSDISS 86 + L I+ V + I +F D P + Sbjct: 61 SSGMLAVIATVFQKEIDWFLDDVPEDDAITPD 92 >gi|153217261|ref|ZP_01951025.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587] gi|124113716|gb|EAY32536.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 1587] Length = 207 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|15020664|emb|CAC44539.1| restriction endonuclease control protein [Lactococcus lactis subsp. cremoris] Length = 77 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 5/82 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NK I++GK I R + +SQE L E + + E G + L+ Sbjct: 1 MSDNK-----FIISIGKTIAHLRKVHNLSQEDLAELSDTHRTYLSEVEGGKRNPTITVLK 55 Query: 61 HISEVLESPISFFFDVSPTVCS 82 + + + +S FF + Sbjct: 56 KMVDSFDISMSSFFKMVEEKND 77 >gi|15901770|ref|NP_346374.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae TIGR4] gi|15903805|ref|NP_359355.1| transcriptional activator [Streptococcus pneumoniae R6] gi|116517204|ref|YP_817168.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae D39] gi|168484245|ref|ZP_02709197.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00] gi|221232674|ref|YP_002511828.1| transcriptional regulator [Streptococcus pneumoniae ATCC 700669] gi|14973451|gb|AAK76014.1| putative transcriptional regulator PlcR [Streptococcus pneumoniae TIGR4] gi|15459444|gb|AAL00566.1| Transcriptional activator [Streptococcus pneumoniae R6] gi|116077780|gb|ABJ55500.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae D39] gi|172042485|gb|EDT50531.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00] gi|220675136|emb|CAR69719.1| putative transcriptional regulator [Streptococcus pneumoniae ATCC 700669] gi|332199372|gb|EGJ13449.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] Length = 287 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + V S++S+ ++ + + L + Sbjct: 63 NEQIEVKSNLSNFKHLSARLLDDRNYDDLEYLYK 96 >gi|16799427|ref|NP_469695.1| hypothetical protein lin0350 [Listeria innocua Clip11262] gi|16412779|emb|CAC95583.1| lin0350 [Listeria innocua Clip11262] Length = 300 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 11/113 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R+ G++Q+++ + I+ +EKG + + S + I + + P+ FF Sbjct: 5 GELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFF- 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY--------FIQIDDVKVRQKII 120 + +++ +DF+ + + + +VR+ I+ Sbjct: 63 -FIYRDFSSTEDDSFWIDFVELSGKNDVVGMQALLDKITLERTEQSEVRKAIL 114 >gi|116691614|ref|YP_837147.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170736384|ref|YP_001777644.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|206562401|ref|YP_002233164.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|116649614|gb|ABK10254.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] gi|169818572|gb|ACA93154.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] gi|198038441|emb|CAR54399.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 73 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 24/64 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + G +R R SQE+L E G+ V + E+G I+ + IS Sbjct: 7 HFGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSISTL 66 Query: 74 FDVS 77 + Sbjct: 67 LPGA 70 >gi|332974608|gb|EGK11526.1| LexA family repressor/S24 family protease [Psychrobacter sp. 1501(2011)] Length = 212 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R +S++ LG +G++ ++ +E+ N + +S+V I + Sbjct: 4 LGQRLFNLRRSKKLSRDALGAKIGVSKTAIKNWEEDSNFPKHEFIDGLSKVFGCSIGYLV 63 Query: 75 DVSPTVCS 82 D P + Sbjct: 64 DGIPDGDN 71 >gi|329922205|ref|ZP_08277922.1| hypothetical protein HMPREF9412_0726 [Paenibacillus sp. HGF5] gi|328942318|gb|EGG38587.1| hypothetical protein HMPREF9412_0726 [Paenibacillus sp. HGF5] Length = 331 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 6/104 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G+++R R+ GMS + + E I + ++ E G +V +E + Sbjct: 3 ELGQQLREARLQKGMSLDDVQEMTKIRKRYLEAIEAGDYKVLPGSFYVRAFIKTYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + E R + Sbjct: 63 IDPDELLEGHKQDVPKSEPEATMEPVIQKRASRPTAERNMKWLP 106 >gi|325979177|ref|YP_004288893.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325179105|emb|CBZ49149.1| DNA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 69 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 6/72 (8%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N K I + K I+ R++ MSQ L + +G++ Q + K+E G N L Sbjct: 1 MKNNK------IQLSKNIKKYRLMKKMSQSDLSKRIGVSHQAISKWETGENYPDFMSLIS 54 Query: 62 ISEVLESPISFF 73 ++++ E + Sbjct: 55 LAQLFEVSLDIL 66 >gi|228907976|ref|ZP_04071826.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] gi|228851642|gb|EEM96446.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] Length = 184 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI- 70 +INVG++I R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINVGQKIMAFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST 97 +FF + + T + + + + F + Sbjct: 63 NFFLEDTNTEELVVRANQRKKITFPES 89 >gi|226362736|ref|YP_002780514.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226241221|dbj|BAH51569.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 206 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 8/112 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R ++ ++L GIT + K E+ + L I L P+ F Sbjct: 18 IGPRLKAARQAQRLTLDELAAGCGITKGYLSKIERDHASASVATLVRICAALNIPVGSLF 77 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + + ++ + F L F + ++I L+ I Sbjct: 78 E-NSAAGEVVRADAYPPISFGGERMAEFLLTPFGE-------RRIQSLLSRI 121 >gi|212635473|ref|YP_002311998.1| helix-turn-helix domain-containing protein [Shewanella piezotolerans WP3] gi|212556957|gb|ACJ29411.1| Helix-turn-helix motif protein [Shewanella piezotolerans WP3] Length = 511 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A L I+ V Sbjct: 13 FLGTKIRNLRKRNHLTMEDLSARCVRVDPESAPSVSYLSMIERGKRVPSAGMLAVIAAVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + + +F D P + Sbjct: 73 QKEVDWFLDDVPEDNAITPE 92 >gi|261407907|ref|YP_003244148.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284370|gb|ACX66341.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 340 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 6/104 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G+++R R+ GMS + + E I + ++ E G +V +E + Sbjct: 3 ELGQQLREARLQKGMSLDDVQEMTKIRKRYLEAIEAGDYKVLPGSFYVRAFIKTYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + E R + Sbjct: 63 IDPDELLEGHKQDVPKSEPEATMEPVIQKRASRPTAERNMKWLP 106 >gi|168998508|ref|YP_001687776.1| putative regulatory protein [Staphylococcus aureus] Length = 113 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ +R + G SQE+L L ++ Q V K+E N L +S++ + Sbjct: 1 MKLAEAIKEQRELKGWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEH 60 Query: 73 FFDVS 77 Sbjct: 61 LIKGD 65 >gi|166364239|ref|YP_001656512.1| transcriptional regulator [Microcystis aeruginosa NIES-843] gi|159030851|emb|CAO88530.1| unnamed protein product [Microcystis aeruginosa PCC 7806] gi|166086612|dbj|BAG01320.1| transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 103 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 30/89 (33%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N+ + G+ + R+ G+SQE+L E + + E+G L + Sbjct: 15 NRSMAKDNLAQFGRCLHNARIQKGLSQERLAEAANLDRTYISLLERGKRNPSLLCLISLC 74 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVM 92 L +S F+ + + Sbjct: 75 RALNISLSELFNTMSINSDVNTDDVRRFD 103 >gi|116619126|ref|YP_819497.1| hypothetical protein LEUM_2054 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116097973|gb|ABJ63124.1| hypothetical protein LEUM_2054 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 255 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K I+ R ++Q + L ++ Q V +E+ R L+ IS+ P+S Sbjct: 3 EINKIIKKIRDDNKLTQTEFAAFLSVSHQTVSSWERARTRPTLVMLKKISQSFNIPLSKL 62 Query: 74 FDVSPTVCSDISSEENN 90 V + Sbjct: 63 LPVDKVPKKSKRDLDKE 79 >gi|110677441|ref|YP_680448.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109453557|gb|ABG29762.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 190 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ L E LG + + + E+ + S L+ I++VLE IS F Sbjct: 12 LGADLRALRKARGLTLADLAERLGRSVGWLSQVERDKSDPSISDLRAIAKVLEVSISMLF 71 Query: 75 DVSPTVCSDI 84 +P ++ Sbjct: 72 RHAPATATEA 81 >gi|15678727|ref|NP_275843.1| hypothetical protein MTH700 [Methanothermobacter thermautotrophicus str. Delta H] gi|2621786|gb|AAB85205.1| conserved protein [Methanothermobacter thermautotrophicus str. Delta H] Length = 182 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R+R R + +++E++ + L I + ++YE G + + AS L I+ L + Sbjct: 6 KEIGSRVRELRELSEITEEEMADYLKIDVETYRRYETGEDDIPASILFEIAHRLGVDMGL 65 Query: 73 FFDVSPTV 80 T Sbjct: 66 LLTGEETR 73 >gi|152977534|ref|YP_001377051.1| helix-turn-helix domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|114152691|gb|ABI52595.1| PlcR [Bacillus cytotoxicus] gi|119380976|gb|ABL73864.1| PlcR [Bacillus cytotoxicus] gi|152026286|gb|ABS24056.1| helix-turn-helix domain protein [Bacillus cytotoxicus NVH 391-98] Length = 288 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 45/103 (43%), Gaps = 4/103 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI+ F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPITHFY 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 +V + + + +S +I ++++ Sbjct: 65 EVLVYSDIERKKRFKDQIQLLSKKKQYD---EIYKIVSNELKK 104 >gi|121587112|ref|ZP_01676888.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 2740-80] gi|153803456|ref|ZP_01958042.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-3] gi|153827548|ref|ZP_01980215.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-2] gi|153829053|ref|ZP_01981720.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 623-39] gi|229514757|ref|ZP_04404218.1| hypothetical protein VCB_002409 [Vibrio cholerae TMA 21] gi|229527755|ref|ZP_04417146.1| hypothetical protein VCG_000827 [Vibrio cholerae 12129(1)] gi|254225954|ref|ZP_04919555.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V51] gi|254284909|ref|ZP_04959875.1| transcriptional regulator, HTH_3 family [Vibrio cholerae AM-19226] gi|261212794|ref|ZP_05927078.1| predicted transcriptional regulator [Vibrio sp. RC341] gi|262189992|ref|ZP_06048298.1| predicted transcriptional regulator [Vibrio cholerae CT 5369-93] gi|297579612|ref|ZP_06941539.1| transcriptional regulator [Vibrio cholerae RC385] gi|121548648|gb|EAX58698.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 2740-80] gi|124121006|gb|EAY39749.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-3] gi|125621488|gb|EAZ49821.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V51] gi|148875482|gb|EDL73617.1| transcriptional regulator, HTH_3 family [Vibrio cholerae 623-39] gi|149738481|gb|EDM52877.1| transcriptional regulator, HTH_3 family [Vibrio cholerae MZO-2] gi|150424912|gb|EDN16689.1| transcriptional regulator, HTH_3 family [Vibrio cholerae AM-19226] gi|229334117|gb|EEN99602.1| hypothetical protein VCG_000827 [Vibrio cholerae 12129(1)] gi|229348737|gb|EEO13695.1| hypothetical protein VCB_002409 [Vibrio cholerae TMA 21] gi|260837859|gb|EEX64536.1| predicted transcriptional regulator [Vibrio sp. RC341] gi|262034133|gb|EEY52567.1| predicted transcriptional regulator [Vibrio cholerae CT 5369-93] gi|297535258|gb|EFH74092.1| transcriptional regulator [Vibrio cholerae RC385] Length = 207 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|295099031|emb|CBK88120.1| Helix-turn-helix. [Eubacterium cylindroides T2-87] Length = 139 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 40/94 (42%), Gaps = 1/94 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFF 74 G+++R R MSQ++L +G++++ ++ +E + L +++ L+ +S+ Sbjct: 4 GEKVRSLRKEKKMSQQELASMVGVSYRTIRSWEVEGRFPKQNVLYQKLADALQCDVSYLM 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 ++ S + N + Q F Sbjct: 64 SEDEAFITEASEQFGNRGARQAQQILEQAAAMFA 97 >gi|293374855|ref|ZP_06621157.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|325840161|ref|ZP_08166969.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] gi|292646524|gb|EFF64532.1| DNA-binding protein [Turicibacter sanguinis PC909] gi|325490400|gb|EGC92723.1| DNA-binding helix-turn-helix protein [Turicibacter sp. HGF1] Length = 356 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 37/94 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++N+GK I R ++QE+L +G++ V K+E + + L I+ + I Sbjct: 1 MNLNIGKVIYELRKKAKVTQEQLANAVGVSVPAVSKWENNTSYPDITLLPAIARYFNTSI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 T+ ++ + ++ Sbjct: 61 DELMSYDMTLSTEEIDVFIKKCQSMLQTQPFEMI 94 >gi|323529073|ref|YP_004231225.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323386075|gb|ADX58165.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 212 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 38/97 (39%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 T + + +++ +S D L R + I+ Sbjct: 95 APQKTPEAIAVAGPHDIPT-LSGHDAKYLLRVWGPIE 130 >gi|300773794|ref|ZP_07083663.1| DNA-binding protein [Sphingobacterium spiritivorum ATCC 33861] gi|300759965|gb|EFK56792.1| DNA-binding protein [Sphingobacterium spiritivorum ATCC 33861] Length = 110 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 9/115 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+IRL R G SQE + + L I+ K E G+ V SRL IS++ + Sbjct: 3 ALGKKIRLLRHQKGWSQEDVAKRLDISIPAFSKIETGITDVNLSRLNQISKLFSLSVVQL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 S + E+ + ++ R I ++++K+I+L + Sbjct: 63 LSTSDS------EEDKQYANELADMSKKLQVRETEVI---ELQKKVIDLYEQLHK 108 >gi|228955292|ref|ZP_04117300.1| hypothetical protein bthur0006_46500 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961271|ref|ZP_04122890.1| hypothetical protein bthur0005_47190 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229049716|ref|ZP_04194273.1| hypothetical protein bcere0027_46740 [Bacillus cereus AH676] gi|229072514|ref|ZP_04205716.1| hypothetical protein bcere0025_46750 [Bacillus cereus F65185] gi|229082273|ref|ZP_04214736.1| hypothetical protein bcere0023_48900 [Bacillus cereus Rock4-2] gi|229112472|ref|ZP_04242009.1| hypothetical protein bcere0018_47120 [Bacillus cereus Rock1-15] gi|229130284|ref|ZP_04259243.1| hypothetical protein bcere0015_47200 [Bacillus cereus BDRD-Cer4] gi|229142358|ref|ZP_04270877.1| hypothetical protein bcere0013_54400 [Bacillus cereus BDRD-ST26] gi|229147576|ref|ZP_04275921.1| hypothetical protein bcere0012_47030 [Bacillus cereus BDRD-ST24] gi|229153219|ref|ZP_04281398.1| hypothetical protein bcere0011_47490 [Bacillus cereus m1550] gi|229181321|ref|ZP_04308651.1| hypothetical protein bcere0005_46630 [Bacillus cereus 172560W] gi|229193309|ref|ZP_04320259.1| hypothetical protein bcere0002_49550 [Bacillus cereus ATCC 10876] gi|228590110|gb|EEK47979.1| hypothetical protein bcere0002_49550 [Bacillus cereus ATCC 10876] gi|228602214|gb|EEK59705.1| hypothetical protein bcere0005_46630 [Bacillus cereus 172560W] gi|228630318|gb|EEK86968.1| hypothetical protein bcere0011_47490 [Bacillus cereus m1550] gi|228635866|gb|EEK92351.1| hypothetical protein bcere0012_47030 [Bacillus cereus BDRD-ST24] gi|228641128|gb|EEK97440.1| hypothetical protein bcere0013_54400 [Bacillus cereus BDRD-ST26] gi|228653217|gb|EEL09096.1| hypothetical protein bcere0015_47200 [Bacillus cereus BDRD-Cer4] gi|228670852|gb|EEL26159.1| hypothetical protein bcere0018_47120 [Bacillus cereus Rock1-15] gi|228700705|gb|EEL53228.1| hypothetical protein bcere0023_48900 [Bacillus cereus Rock4-2] gi|228710490|gb|EEL62463.1| hypothetical protein bcere0025_46750 [Bacillus cereus F65185] gi|228722629|gb|EEL74017.1| hypothetical protein bcere0027_46740 [Bacillus cereus AH676] gi|228798392|gb|EEM45386.1| hypothetical protein bthur0005_47190 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804425|gb|EEM51036.1| hypothetical protein bthur0006_46500 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 79 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVE 65 Query: 72 FFFDVSPTVCSDIS 85 F + D Sbjct: 66 EIFTLVEGEEDDEE 79 >gi|225873562|ref|YP_002755021.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225793885|gb|ACO33975.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 63 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G SQ L + LG++ Q V E G ++ + PI F Sbjct: 3 NRLRDLRAERGWSQADLAQELGVSRQSVNAIETGRFDPSLPLAFKLARLFGEPIEKIF 60 >gi|261856939|ref|YP_003264222.1| XRE family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261837408|gb|ACX97175.1| transcriptional regulator, XRE family [Halothiobacillus neapolitanus c2] Length = 184 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 26/71 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+RL R+ +SQ L + G+ + E G S L+ I + + FF Sbjct: 5 VGFRLRLVRLRHQLSQRALAKRTGVAHATISLIESGRTSPSVSALKRILAGIPMTLGEFF 64 Query: 75 DVSPTVCSDIS 85 Sbjct: 65 SDELPPAESEI 75 >gi|170750171|ref|YP_001756431.1| anaerobic benzoate catabolism transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170656693|gb|ACB25748.1| transcriptional regulator, XRE family with shikimate kinase activity [Methylobacterium radiotolerans JCM 2831] Length = 294 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 45/115 (39%), Gaps = 12/115 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R + G+S++ L + G++ + + + E G V L+ ++ + + Sbjct: 15 LGRRVRHARTVRGLSRKVLSQTSGLSERYIAQLEGGQGNVSIILLRRVANAMGVRLDDLI 74 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI-------DDVKVRQKIIEL 122 +D + V D ++ Q+ + + R +I L Sbjct: 75 TG-----NDALPDWPVVRDLLAQASPAQIVAAKEALSGGSRPESSNRPRVALIGL 124 >gi|163816098|ref|ZP_02207466.1| hypothetical protein COPEUT_02282 [Coprococcus eutactus ATCC 27759] gi|158448518|gb|EDP25513.1| hypothetical protein COPEUT_02282 [Coprococcus eutactus ATCC 27759] Length = 69 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 28/65 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R LG++Q+++G + + Q + + E+G + I++V + F Sbjct: 5 NKLKEYRAKLGVNQQEMGALVQTSRQTISQIERGDYSPSVTLALKIAKVCGVRVEDIFQY 64 Query: 77 SPTVC 81 Sbjct: 65 EEDEE 69 >gi|111220943|ref|YP_711737.1| putative HTH-type transcriptional regulator [Frankia alni ACN14a] gi|111148475|emb|CAJ60147.1| Putative HTH-type transcriptional regulator [Frankia alni ACN14a] Length = 498 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 4/120 (3%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVL 66 P + VG+ +R R G++Q++L + LG V K E G + S L+HI+ L Sbjct: 13 ATPASVGVGQLLRAYRQAHGLTQQQLADRLGFDQSYVSKVESGRRAIHDISTLRHIARNL 72 Query: 67 ESPISFFF---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 D ++ +L R + + + + + L Sbjct: 73 ALSPEDVGLAPGAMADRRRDTGPRSPAAEQVAASQRAWRLTRDHLNHHRISLARAAVRLY 132 >gi|9635515|ref|NP_059606.1| C2 [Enterobacteria phage P22] gi|62362268|ref|YP_224193.1| gp55 [Enterobacteria phage ES18] gi|168240083|ref|ZP_02665015.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451869|ref|YP_002044323.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|59800201|sp|P69202|RPC2_BPP22 RecName: Full=Repressor protein C2 gi|15655|emb|CAA24470.1| unnamed protein product [Enterobacteria phage P22] gi|1143409|emb|CAA60873.1| c2 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|8439602|gb|AAF75024.1| repressor protein [Enterobacteria phage P22] gi|28394307|tpg|DAA01021.1| TPA_inf: prophage repressor [Enterobacteria phage P22] gi|58339111|gb|AAW70526.1| gp55 [Enterobacteria phage ES18] gi|169658888|dbj|BAG12645.1| prophage repressor [Enterobacteria phage P22] gi|194410173|gb|ACF70392.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205340367|gb|EDZ27131.1| P22 repressor protein c2 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 216 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +S+ L+ + Sbjct: 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLK 66 Query: 76 VSPTVCSDISSEENNV 91 + + + Sbjct: 67 GDLSQTNVAYHSRHEP 82 >gi|85710340|ref|ZP_01041405.1| predicted transcription regulator, containing DNA-binding HTH domain [Erythrobacter sp. NAP1] gi|85689050|gb|EAQ29054.1| predicted transcription regulator, containing DNA-binding HTH domain [Erythrobacter sp. NAP1] Length = 66 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 20/56 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G++Q L L ++ Q + E ++ + P+ F Sbjct: 5 LRDLRKGRGLNQADLANTLEVSRQTIIAIEADKYDPSLPMAYRLAAFFDVPVEELF 60 >gi|333023200|ref|ZP_08451264.1| putative DNA-binding protein [Streptomyces sp. Tu6071] gi|332743052|gb|EGJ73493.1| putative DNA-binding protein [Streptomyces sp. Tu6071] Length = 204 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 24/68 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E + ++ + + E G + L ++ + +S +P Sbjct: 20 LRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSELLGETP 79 Query: 79 TVCSDISS 86 + Sbjct: 80 AGPGSVVR 87 >gi|324993465|gb|EGC25385.1| transcriptional regulator [Streptococcus sanguinis SK405] gi|327458828|gb|EGF05176.1| transcriptional regulator [Streptococcus sanguinis SK1057] Length = 65 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R M+Q L + +G+T Q + E G S I + L + F Sbjct: 6 RLKMARAERDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLF 62 >gi|319946276|ref|ZP_08020516.1| transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747658|gb|EFV99911.1| transcriptional regulator [Streptococcus australis ATCC 700641] Length = 158 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 1 MIGENIKALRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYIDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + ++ I L + + Sbjct: 61 VGEEKMLTPVEDYQLTLKIEVIKERGANILAQLYR 95 >gi|296284711|ref|ZP_06862709.1| DNA-binding protein [Citromicrobium bathyomarinum JL354] Length = 81 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 1/73 (1%) Query: 15 VGKRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R+R R MSQ LGE +G+T + E+G I+ + + Sbjct: 7 ITNRVRELREEHDKMSQAALGEAVGVTRHTIIAIEQGRYSPSLETAFRIARLFGVGVEDV 66 Query: 74 FDVSPTVCSDISS 86 F S Sbjct: 67 FGWEGGDPRRTPS 79 >gi|317127194|ref|YP_004093476.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472142|gb|ADU28745.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 207 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 6/90 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI-- 70 +++G I +R L +SQE + + LG++ Q V K+E +++ L ++ + E I Sbjct: 1 MSLGSNINNKRKSLNLSQEYVADQLGVSRQAVSKWENNLSKPSTQNLIKMATLFECDIKE 60 Query: 71 ----SFFFDVSPTVCSDISSEENNVMDFIS 96 F + + + S+++ M + Sbjct: 61 LVSSDKFMEKQKNLENQTESKKDIRMHMAA 90 >gi|262173540|ref|ZP_06041217.1| predicted transcriptional regulator [Vibrio mimicus MB-451] gi|261890898|gb|EEY36885.1| predicted transcriptional regulator [Vibrio mimicus MB-451] Length = 207 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|258509371|ref|YP_003172122.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|257149298|emb|CAR88271.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG] gi|259650650|dbj|BAI42812.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 215 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R ++Q ++G L ++ + + +E G + S L IS++ + P+ Sbjct: 6 KLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQIPLDQLLRED 65 Query: 78 PT 79 Sbjct: 66 QD 67 >gi|225855439|ref|YP_002736951.1| transcriptional activator [Streptococcus pneumoniae JJA] gi|225723117|gb|ACO18970.1| transcriptional activator [Streptococcus pneumoniae JJA] Length = 287 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + V S++S+ ++ + + L + Sbjct: 63 NEQIEVKSNLSNFKHLSARLLDDRNYDDLEYLYK 96 >gi|210610561|ref|ZP_03288487.1| hypothetical protein CLONEX_00677 [Clostridium nexile DSM 1787] gi|210152420|gb|EEA83426.1| hypothetical protein CLONEX_00677 [Clostridium nexile DSM 1787] Length = 101 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ + V + +G+RI+ R+ ++ L L I Q+ + E G +L IS+ Sbjct: 7 KEYSSDVQLQIGQRIQKLRIDKKIAAVDLAAVLDIQSNQMSRIENGRANCTVPQLYVISQ 66 Query: 65 VLESPISFFF 74 +L + + Sbjct: 67 ILGCSVDYLL 76 >gi|169343424|ref|ZP_02864427.1| helix-turn-helix domain protein [Clostridium perfringens C str. JGS1495] gi|169298510|gb|EDS80596.1| helix-turn-helix domain protein [Clostridium perfringens C str. JGS1495] Length = 182 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 15/142 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G ++ R ++QE++ + L I YE L+ ISEV P+ Sbjct: 7 IKIGNSLKEIRKNHSLTQEEMAKALNIPRSTYANYENNKREPSKELLEKISEVFNIPLID 66 Query: 73 ----FFDVSPTVCSDISSEENNVMD-------FISTPDGLQLNRYFI--QIDDVKVRQKI 119 F S D I+ ++L +I + + + I Sbjct: 67 KPVSIFSGPGGEQLKKSLSMPINNDIKKYFDSPITKNALIELINNEYNEKIAEPESNESI 126 Query: 120 IE--LVRSIVSSEKKYRTIEEE 139 + L+ +++ S + E+ Sbjct: 127 LNYHLLSALLESLDYNIDLLED 148 >gi|149012465|ref|ZP_01833496.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] gi|147763521|gb|EDK70457.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP19-BS75] Length = 287 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + S++S+ + + + L + Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYDDLEYLYK 96 >gi|126698979|ref|YP_001087876.1| putative phage regulatory protein [Clostridium difficile 630] gi|254974925|ref|ZP_05271397.1| putative phage regulatory protein [Clostridium difficile QCD-66c26] gi|255092314|ref|ZP_05321792.1| putative phage regulatory protein [Clostridium difficile CIP 107932] gi|255100395|ref|ZP_05329372.1| putative phage regulatory protein [Clostridium difficile QCD-63q42] gi|255306340|ref|ZP_05350511.1| putative phage regulatory protein [Clostridium difficile ATCC 43255] gi|255314052|ref|ZP_05355635.1| putative phage regulatory protein [Clostridium difficile QCD-76w55] gi|255516732|ref|ZP_05384408.1| putative phage regulatory protein [Clostridium difficile QCD-97b34] gi|255649831|ref|ZP_05396733.1| putative phage regulatory protein [Clostridium difficile QCD-37x79] gi|260682989|ref|YP_003214274.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260686587|ref|YP_003217720.1| putative phage regulatory protein [Clostridium difficile R20291] gi|306519931|ref|ZP_07406278.1| putative phage regulatory protein [Clostridium difficile QCD-32g58] gi|115250416|emb|CAJ68238.1| Transcriptional regulator, Phage-type [Clostridium difficile] gi|260209152|emb|CBA62363.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260212603|emb|CBE03613.1| putative phage regulatory protein [Clostridium difficile R20291] Length = 139 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 52/122 (42%), Gaps = 6/122 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R + Q +L E LG + K+E+ + + L+ I+E+ + + Sbjct: 4 LGERIVYLRKAKNLKQYELEEMLGCDN--LSKFERNIRKPNYEILKSIAEIFNVSVDWLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ--LNRYFIQIDDVKVRQKIIELVR-SIVSSEK 131 + +++ +++ + + L F +++D + KI ++ + EK Sbjct: 62 NGDNLSHKSDLICDSSSNYPLNSINSNEIKLLNNFRKLNDYD-KAKIEGMIELKLHEYEK 120 Query: 132 KY 133 + Sbjct: 121 EK 122 >gi|70733319|ref|YP_263093.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68347618|gb|AAY95224.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 182 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVE 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF +V S I + + ++D ++L Sbjct: 61 FFSEEVLQETPSQIVYKAHELIDISDGAVTMKLV 94 >gi|82749860|ref|YP_415601.1| transcriptional regulator [Staphylococcus aureus RF122] gi|82655391|emb|CAI79776.1| probable transcriptional regulator [Staphylococcus aureus RF122] Length = 391 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE +++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEINKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|328958082|ref|YP_004375468.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] gi|328674406|gb|AEB30452.1| putative DNA-binding protein, XRE family [Carnobacterium sp. 17-4] Length = 63 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I R G++Q L + +T Q V E +S++L + + F Sbjct: 3 NKIEQLRKDKGLTQADLAKACNVTRQTVNAIENNKYDPTLQLAFSLSKILNTEVDKLFTP 62 Query: 77 S 77 Sbjct: 63 D 63 >gi|320532299|ref|ZP_08033153.1| helix-turn-helix protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135486|gb|EFW27580.1| helix-turn-helix protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 62 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G++Q +LG LG++ Q + EKG I+ E+ + F Sbjct: 5 VRGLREARGLTQAQLGAALGVSRQSINSIEKGKYDPSLPLAIAIARYFETTVEEIF 60 >gi|293410222|ref|ZP_06653798.1| transcriptional regulator [Escherichia coli B354] gi|291470690|gb|EFF13174.1| transcriptional regulator [Escherichia coli B354] Length = 134 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 16/126 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R LG+SQ + + G+ +YEKG + A+ L +S + + Sbjct: 5 IGQRLREERERLGLSQVAMSDIGGVKKLTQLRYEKGDSFPDAAYLAALSR-FGLDVQYVV 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + E+ +L F + + V+ +I ++ SEK+ + Sbjct: 64 LGIHSPETYNDDEQ-------------ELITRF-RAASLDVKNAVIGALKG-AVSEKETQ 108 Query: 135 TIEEEC 140 E Sbjct: 109 PSGREL 114 >gi|256617057|ref|ZP_05473903.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] gi|256596584|gb|EEU15760.1| helix-turn-helix domain-containing protein [Enterococcus faecalis ATCC 4200] Length = 111 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 4/104 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 10 IREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLDNVD 69 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIE 121 D E +ST D ++ Y + R ++++ Sbjct: 70 ---IDYEEEFLAFYRSLSTEDAIRTIDYMKLLKRQENERNQLLK 110 >gi|283796194|ref|ZP_06345347.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291076130|gb|EFE13494.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 118 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 43/111 (38%), Gaps = 6/111 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G SQ + + +G Q++E G + I+ + + Sbjct: 10 ERLKKLRQEKGFSQMEASDYVGAGTGTWQQWEIGQRIPRDIAIIAIAAKYNVNVGYICGT 69 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR--QKIIELVRS 125 + D+ + N ++ + + ++Q+ + Q+++E VR Sbjct: 70 TDQRLPDLVTIPRNQLE----EGDWEAIQQYLQLTQEEKLFVQQVLEFVRQ 116 >gi|219854874|ref|YP_002471996.1| hypothetical protein CKR_1531 [Clostridium kluyveri NBRC 12016] gi|219568598|dbj|BAH06582.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 257 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+R R ++Q + L +T + KYE G + L+ +S+ I + Sbjct: 56 RLRELREENNLTQGAIASILNLTKANISKYELGRLQPNIETLKLLSDHFNVSIDYL 111 >gi|212697471|ref|ZP_03305599.1| hypothetical protein ANHYDRO_02041 [Anaerococcus hydrogenalis DSM 7454] gi|212675470|gb|EEB35077.1| hypothetical protein ANHYDRO_02041 [Anaerococcus hydrogenalis DSM 7454] Length = 140 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 57/133 (42%), Gaps = 5/133 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPI 70 +++ G ++R R ++Q++L + +G++ + + +YE G ++ ++ ++EVL++ Sbjct: 8 NMSFGTKLRQLRESKNLTQDQLAKLVGVSLKTISRYEMGESKPRYRKVYDKLAEVLDTSH 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVRS---I 126 + D + + + + D K ++ I++ ++ I Sbjct: 68 DYLVTDEDNFILDAREKYGYKGAKDAKEMVDGVIGLMAGGEIDEKDKKAILDSIQEAYYI 127 Query: 127 VSSEKKYRTIEEE 139 ++ K ++ Sbjct: 128 AKNKNKKYNPHKD 140 >gi|168487423|ref|ZP_02711931.1| transcriptional activator [Streptococcus pneumoniae CDC1087-00] gi|183569749|gb|EDT90277.1| transcriptional activator [Streptococcus pneumoniae CDC1087-00] Length = 287 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L + + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAKGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + S++S+ + + + L + Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYDDLEYLYK 96 >gi|167582937|ref|ZP_02375811.1| DNA-binding protein [Burkholderia thailandensis TXDOH] Length = 185 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 4/106 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F S Sbjct: 4 RLKLLRKQKGWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSES 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + S R + I +K++ V Sbjct: 64 RDRELITVTRAAQRAPMGSAAS----ARTYESIAAGVAPKKLLPFV 105 >gi|116695851|ref|YP_841427.1| anaerobic benzoate catabolism transcriptional regulator [Ralstonia eutropha H16] gi|113530350|emb|CAJ96697.1| Transcriptional Regulator [Ralstonia eutropha H16] Length = 320 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 17/111 (15%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP + +G+R+R R G++++ + G++ + + E G LQHI++ L+ Sbjct: 32 NPFLVALGERVRELRACRGLTRKAAAQAAGVSERHLANLEYGSGNASILVLQHIADALQC 91 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 ++ D ++ L R ++ D +++ Sbjct: 92 SLAGLLG-----------------DITTSSPEWILLRELLEHRDEATLRRV 125 >gi|77458573|ref|YP_348078.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382576|gb|ABA74089.1| putative DNA binding protein [Pseudomonas fluorescens Pf0-1] Length = 215 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 30/67 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+ V + ++ R +S + L G++ + + E G + L I++ L+ Sbjct: 29 DPICERVAQNLQRLRGKRHLSLDALARQCGVSRAMLAQIESGRSVPSIKVLCKIAKGLKV 88 Query: 69 PISFFFD 75 ++ F + Sbjct: 89 SVAAFLE 95 >gi|332971256|gb|EGK10219.1| transcriptional regulator with an addtional conserved domain protein [Desmospora sp. 8437] Length = 386 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 44/113 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R+R R G++ ++L E +G++ Q + KYE G Q + L PI FF Sbjct: 10 FIPERLREGREARGLTIQELSERVGVSHQSISKYENGKAVPSGMVFQKLLFTLNLPIHFF 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + D + S L + D +KI++ + + Sbjct: 70 YKPIHRGIEDSVVFFRSKAATTSRSKKLHEIKINWLQDISVELEKILDFPKVL 122 >gi|319787830|ref|YP_004147305.1| XRE family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466342|gb|ADV28074.1| transcriptional regulator, XRE family [Pseudoxanthomonas suwonensis 11-1] Length = 73 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 1/61 (1%) Query: 15 VGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V IR R G M+Q+ L + G+T Q + E G I+ + Sbjct: 8 VANEIRRLRFERGEMTQQALADACGVTRQTIIALEAGRYAPSLELAFRIARAFGVGVEDV 67 Query: 74 F 74 F Sbjct: 68 F 68 >gi|297184311|gb|ADI20428.1| predicted transcriptional regulators [uncultured alpha proteobacterium EB080_L43F08] Length = 190 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 36/72 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ +L E +G + + + E+ ++ + L+ +++ + P+S FF Sbjct: 12 LGVDLRALRKSRGITLTELSEKMGRSVGWLSQVERDISSPTINELRQLAKEFQVPLSLFF 71 Query: 75 DVSPTVCSDISS 86 + +++ Sbjct: 72 GSTEAKANEVGK 83 >gi|229072719|ref|ZP_04205921.1| Transcription regulator, probable-related protein [Bacillus cereus F65185] gi|229193504|ref|ZP_04320451.1| Transcription regulator, probable-related protein [Bacillus cereus ATCC 10876] gi|228590036|gb|EEK47908.1| Transcription regulator, probable-related protein [Bacillus cereus ATCC 10876] gi|228710695|gb|EEL62668.1| Transcription regulator, probable-related protein [Bacillus cereus F65185] Length = 68 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 7 NNVKQYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSLFWE 66 Query: 77 SP 78 Sbjct: 67 GD 68 >gi|217978763|ref|YP_002362910.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] gi|217504139|gb|ACK51548.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] Length = 217 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 30/66 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +IR+ R L ++ +L G++ + K E G S LQ ++ L P+S F Sbjct: 35 AIGAQIRMHRKRLDITGGELAAAAGLSTGMLSKIENGQISPSLSTLQSLARALNQPLSSF 94 Query: 74 FDVSPT 79 F Sbjct: 95 FTPFEE 100 >gi|167759390|ref|ZP_02431517.1| hypothetical protein CLOSCI_01737 [Clostridium scindens ATCC 35704] gi|167662947|gb|EDS07077.1| hypothetical protein CLOSCI_01737 [Clostridium scindens ATCC 35704] Length = 117 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/120 (10%), Positives = 45/120 (37%), Gaps = 7/120 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R+ M+Q+ + L + + YE + +L ++ + I + + Sbjct: 5 KKLKTLRLENEMTQDYVASRLNVARSTIAGYETKNRQPSHEKLAALANLFHVTIDYLLED 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + ++ +N P L + + + ++ ++E + + +++ Sbjct: 65 DEVIHMALAQNDNLP------PMEQNLLYKYKMLSS-RSQKDLLEYIHLLELRDREQEAT 117 >gi|106879454|emb|CAJ20007.1| putative DNA binding regulatory protein [Streptomyces cattleya] Length = 185 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 44/131 (33%), Gaps = 12/131 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V + VG ++R R G+S +L G++ + E G + I+ L P+ Sbjct: 7 VGVTVGAQVRRLREFRGLSVAELSRLSGVSRATLSMLESGRGNPTIETVSAIAVALRLPL 66 Query: 71 SFFFDV----SPTVCSDISSEENNVMDFI--------STPDGLQLNRYFIQIDDVKVRQK 118 P + + + D + S L+L ++D + Sbjct: 67 GDLLVDPTPPEPVLRPGTPRPQTSRQDLLDRIGAGGHSEIWRLRLCGAGRRVDSPPHTRG 126 Query: 119 IIELVRSIVSS 129 +E V ++ Sbjct: 127 TLERVVALRGR 137 >gi|60594530|pdb|1Y9Q|A Chain A, Crystal Structure Of Hth_3 Family Transcriptional Regulator From Vibrio Cholerae Length = 192 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 38/84 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 11 QIANQLKNLRKSRGLSLDATAQLTGVSKAXLGQIERGESSPTIATLWKIASGLEASFSAF 70 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 F P + S S +++ I T Sbjct: 71 FANDPQLLSSERSFPDDLNXKIHT 94 >gi|330837028|ref|YP_004411669.1| helix-turn-helix domain-containing protein [Spirochaeta coccoides DSM 17374] gi|329748931|gb|AEC02287.1| helix-turn-helix domain protein [Spirochaeta coccoides DSM 17374] Length = 191 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ RM ++ L E G++ + + E + + IS+ L + Sbjct: 8 IGKNIQKLRMSRNLTLNVLSERSGVSKAMLSQIESDKVNPTVATVWKISKGLGVELQDVL 67 Query: 75 DVSP 78 D+ Sbjct: 68 DIDD 71 >gi|322834164|ref|YP_004214191.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321169365|gb|ADW75064.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 184 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 32/84 (38%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + R++ R G+S E+L G++ + K E+ + AS L ++ L Sbjct: 2 SIDQLIATRLQALRKSQGLSLEQLASSSGVSKAMISKIERQDSSPSASLLGRLAASLGVS 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMD 93 ++ + + + Sbjct: 62 LAQLLSEDNEQPAPLRPLAQQEVW 85 >gi|300863840|ref|ZP_07108765.1| Transcriptional Regulator, XRE family protein [Oscillatoria sp. PCC 6506] gi|300338188|emb|CBN53911.1| Transcriptional Regulator, XRE family protein [Oscillatoria sp. PCC 6506] Length = 82 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +KK + +G +R RR LG+SQE+LG + + E+GV + L Sbjct: 1 MNQSKKK---ILRALGHLVRQRRTALGISQEELGLRANLDRTYISGVERGVRNPSLTALT 57 Query: 61 HISEVLESPISFFFDVSPTVCSDIS 85 +++ L+ +S + V +I Sbjct: 58 SLAKGLDLTVSNLLNNLEIVVENIE 82 >gi|317127466|ref|YP_004093748.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472414|gb|ADU29017.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 429 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+R++ R +SQ + E + + E G L +SE L P ++ Sbjct: 1 MHIGERLKRLRNNNNISQISVCEGIT-SPSHYSNIESGRYEPSEDILVQLSERLHVPAAY 59 Query: 73 FFDVSPTV 80 +V Sbjct: 60 LLNVYDES 67 >gi|281491791|ref|YP_003353771.1| transcriptional repressor [Lactococcus lactis subsp. lactis KF147] gi|281375505|gb|ADA65015.1| Transcriptional repressor [Lactococcus lactis subsp. lactis KF147] Length = 252 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 28/72 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R ++Q +L E LG+ +E+ L+ ++++ + PI Sbjct: 4 GQNLKKLRKNAKLTQSQLAEKLGMKQNAYVLWEQKSTNPTLELLEKLADIYDLPIQELIK 63 Query: 76 VSPTVCSDISSE 87 + + Sbjct: 64 ETDNNAEKQLID 75 >gi|254463689|ref|ZP_05077100.1| DNA-binding protein [Rhodobacterales bacterium Y4I] gi|206684597|gb|EDZ45079.1| DNA-binding protein [Rhodobacterales bacterium Y4I] Length = 189 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 30/69 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G++ + L + + + E+ ++ S L+ I+E L P+S F Sbjct: 11 LGADIRALRKARGLTLTDVAAVLNRSVGWLSQVERDMSEPSISDLRQIAEALGVPMSMLF 70 Query: 75 DVSPTVCSD 83 S + Sbjct: 71 AHSGAPAHE 79 >gi|254931138|ref|ZP_05264497.1| transcriptional regulator [Listeria monocytogenes HPB2262] gi|293582686|gb|EFF94718.1| transcriptional regulator [Listeria monocytogenes HPB2262] Length = 140 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 54/135 (40%), Gaps = 11/135 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G R+R R ++Q+K+ + L I + + YE+ L+ ++E S+ Sbjct: 3 GDRLRSLRENKNLTQQKVADDLNIKRENLSNYERNKREPDYEMLKKLAEYYGVSRSYILG 62 Query: 75 --------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +++ I + ++D +S D ++ ++D+ + I+ L S+ Sbjct: 63 ETDKKHYWELNDKDERSIQKDLQKMIDDLSNSDAFAYSKEDGEMDENTKKLLIMSLENSL 122 Query: 127 --VSSEKKYRTIEEE 139 E K R ++ Sbjct: 123 RIAKEESKKRFTPKK 137 >gi|149203901|ref|ZP_01880869.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] gi|149142343|gb|EDM30388.1| transcriptional regulator, XRE family protein [Roseovarius sp. TM1035] Length = 133 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 12/124 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R GMSQ L + LG+ + ++ +E ++ A++L ++ +L + + Sbjct: 18 GDRVTGARERSGMSQSDLAKRLGVKLKTLKAWENDLSEPRANKLSMMAGMLNVSLLWLLS 77 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E + D + + I R ++ + EK R Sbjct: 78 GEGEGPGAPEMGEL-------SRDVMDMLTEIRDI-----RAQMTRATDRLGRLEKTLRA 125 Query: 136 IEEE 139 E Sbjct: 126 KLRE 129 >gi|312130063|ref|YP_003997403.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM 17132] gi|311906609|gb|ADQ17050.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM 17132] Length = 255 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 4/100 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V + I++ R +G++QEKL LGI + V YE+ +L ++ + + Sbjct: 3 YVNENIKVLRNRMGLTQEKLAALLGINRKAVGSYEENRATPPLDKLNRLASLFGVSMDQL 62 Query: 74 ----FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 F + + + E + + ++ + F + Sbjct: 63 IHHRFSTESPLFEEQAPEVPTEVVKEAPALIVEKKKPFSR 102 >gi|312866087|ref|ZP_07726308.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] gi|311098491|gb|EFQ56714.1| transcriptional regulator, AbrB family [Streptococcus downei F0415] Length = 162 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + + + R + G SQEK+ E + I+ Q K+E G + ++EV I Sbjct: 21 ENLIMLRKLKGFSQEKIAEKIAISRQAYGKWESGETIPNIEKCALLAEVYGVTIDSLIRE 80 Query: 77 SPTVCSDISSEENNVMDF 94 + ++ F Sbjct: 81 YRVEDTPMAPAPEGKHIF 98 >gi|255528296|ref|ZP_05395109.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255508014|gb|EET84441.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 71 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +IR R G++ +L + G+T + + E+ + S L+ IS LE PI F Sbjct: 1 MLGPKIREIRQEKGLTLNELADKTGLTASYLSQIERNIIDPSLSSLRKISLSLEVPIYTF 60 Query: 74 FDVSPTVCSD 83 Sbjct: 61 LTDEKKTKGA 70 >gi|257063361|ref|YP_003143033.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256791014|gb|ACV21684.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 256 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 5/115 (4%) Query: 10 PVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 PVD GK I+ R ++Q ++ +G+T + V K+E+G A + + L Sbjct: 2 PVDRAGFGKTIQALRKHASVTQGEVASRVGVTDKAVSKWERGEALPAAESFAALGKALNV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFIST----PDGLQLNRYFIQIDDVKVRQKI 119 P F+ + + + P G + R I+ QK+ Sbjct: 62 PALVLFEAMEPESEQGQAARALPQAALLSLGIEPKGFEHTRLLIRRPYTDTLQKL 116 >gi|229074639|ref|ZP_04207662.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-18] gi|228708521|gb|EEL60671.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock4-18] Length = 107 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE 87 + + SE Sbjct: 61 LLHDETEKEARLDSE 75 >gi|260880974|ref|ZP_05403308.2| repressor protein C2 [Mitsuokella multacida DSM 20544] gi|260850090|gb|EEX70097.1| repressor protein C2 [Mitsuokella multacida DSM 20544] Length = 141 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 49/130 (37%), Gaps = 10/130 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +++G IR RR L ++Q KLG+ + Q + +E G + L +++ L I Sbjct: 10 MSIGDNIRKRRKELKLTQTKLGQMVHKCSQVISNWEGGYTTGITIEDLIALADALRISIL 69 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + E+ + ++ + +++++L+ ++ Sbjct: 70 SLIPYVKDDSNSYREEQASFETDYINTT---------KVAENITNKRLLQLINEYPHLDE 120 Query: 132 KYRTIEEECM 141 K I + + Sbjct: 121 KSNAIIDAII 130 >gi|220921966|ref|YP_002497267.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946572|gb|ACL56964.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 227 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 +G +R R+ LGM+QE+L E ++ + K E+G+ + + L I+ L IS Sbjct: 4 IGNNVRNARLRLGMTQEQLAEAANVSQTTIDKIERGLTK-RSKYLPWIAIALSVDISELD 62 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPDG 100 SPT E + ++ G Sbjct: 63 NSLRYSPTEKEKDVGEVVSRPHLLAFRPG 91 >gi|161505000|ref|YP_001572112.1| hypothetical protein SARI_03130 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866347|gb|ABX22970.1| hypothetical protein SARI_03130 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 94 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 4/77 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESP 69 + KR+R+ R + MSQE L G++ + + YE G +R + ++ VL P Sbjct: 1 MIPKRLRIARELADMSQEDLAAAAGVSEETGSSRISHYEHGRHRPKFELVCQLARVLNVP 60 Query: 70 ISFFFDVSPTVCSDISS 86 +F+ + + + Sbjct: 61 EGYFYTLDDSFAEAMLK 77 >gi|86751755|ref|YP_488251.1| anaerobic benzoate catabolism transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86574783|gb|ABD09340.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodopseudomonas palustris HaA2] Length = 305 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 1/118 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + +G+R+R R + GMS++ L + GI+ + + + E G V L+ Sbjct: 1 MTQSAESDASFLLELGQRVRTLRGLRGMSRKVLAKVSGISERYIAQLESGKGNVSIMLLR 60 Query: 61 HISEVLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 +S+ L +P+ P++ + + + + ++ R+ Sbjct: 61 RVSDALATPLEDLLPSGDPSIDWPVIRDLVRRATPVQIAHAKDVLSGMGRLGAGARRE 118 >gi|15901276|ref|NP_345880.1| transcriptional repressor, putative [Streptococcus pneumoniae TIGR4] gi|15903322|ref|NP_358872.1| transcriptional repressor, putative [Streptococcus pneumoniae R6] gi|298502624|ref|YP_003724564.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|14972912|gb|AAK75520.1| putative transcriptional repressor [Streptococcus pneumoniae TIGR4] gi|15458920|gb|AAL00083.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|298238219|gb|ADI69350.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] Length = 79 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R+ ++Q +L E +G+T Q + E G S Q I L + F Sbjct: 16 KLKLARVERDLTQGQLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 75 Query: 78 PTVC 81 Sbjct: 76 EDEK 79 >gi|304407914|ref|ZP_07389564.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304342933|gb|EFM08777.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 72 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 1/68 (1%) Query: 14 NVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ IR R G M+Q++L + +G+T Q + EKG I+ V + + Sbjct: 5 HITSNIRSLRFNHGEMTQQQLADLVGVTRQTIVAIEKGKYSPSLELAFRIARVFKLSLEE 64 Query: 73 FFDVSPTV 80 F Sbjct: 65 VFTYGDEG 72 >gi|298480154|ref|ZP_06998353.1| DNA-binding protein [Bacteroides sp. D22] gi|298273963|gb|EFI15525.1| DNA-binding protein [Bacteroides sp. D22] Length = 191 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R +S E+L + G+ +QV++ E ++ + L I+ VL + Sbjct: 5 KIVGEKIKALREDKSISIEELAQRSGLAIEQVERIENNIDIPSLAPLIKIARVLGVRLGT 64 Query: 73 FFDVSPT------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F D + + + I + ++ + D + II+++ Sbjct: 65 FLDDQDEVGPVVCRKKEAKDAISFSNNAIHSRKHMEYHSLSKSKADRHMEPFIIDVM 121 >gi|290962183|ref|YP_003493365.1| regulatory protein [Streptomyces scabiei 87.22] gi|260651709|emb|CBG74834.1| putative regulatory protein [Streptomyces scabiei 87.22] Length = 198 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R + L E GI+ + + E G+ + L I+ + P+ Sbjct: 18 VGPRLRRIRKEREATLAGLSEATGISVSTLSRLESGLRKPSLELLLPIARAHQVPLDELI 77 Query: 75 DVSP 78 P Sbjct: 78 GEPP 81 >gi|269794408|ref|YP_003313863.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269096593|gb|ACZ21029.1| transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 64 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R R G+SQ LG LG++ Q + E G I+ + + F V Sbjct: 5 VRALREAAGLSQAALGTVLGVSRQTINSIETGKYDPSLPLAIAIARHFTTTVEEIFHVD 63 >gi|302517506|ref|ZP_07269848.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302426401|gb|EFK98216.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 398 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 2/105 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R G SQ + GI+ + + E G + L ++ L P+ Sbjct: 4 LGAKVRHYRQRGGRSQAVIAGLCGISDRYLSLIENGRAEPSLAVLTSLAAELGVPVGALL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 D + + + + G R + +R+++ Sbjct: 64 DGPQPGPEPVPTTVSAGVAQALMGHGRP--RSEEAVTPAALRERV 106 >gi|229141099|ref|ZP_04269641.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|228642377|gb|EEK98666.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] Length = 194 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 14 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 73 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + E + ++ Sbjct: 74 LLLEQKDRLKVVKKVERKYSVYGKDEQRIEHV 105 >gi|228988281|ref|ZP_04148376.1| hypothetical protein bthur0001_49380 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229158633|ref|ZP_04286691.1| hypothetical protein bcere0010_48060 [Bacillus cereus ATCC 4342] gi|229169747|ref|ZP_04297447.1| hypothetical protein bcere0007_46910 [Bacillus cereus AH621] gi|229175726|ref|ZP_04303232.1| hypothetical protein bcere0006_48020 [Bacillus cereus MM3] gi|228607677|gb|EEK64993.1| hypothetical protein bcere0006_48020 [Bacillus cereus MM3] gi|228613786|gb|EEK70911.1| hypothetical protein bcere0007_46910 [Bacillus cereus AH621] gi|228624617|gb|EEK81386.1| hypothetical protein bcere0010_48060 [Bacillus cereus ATCC 4342] gi|228771453|gb|EEM19924.1| hypothetical protein bthur0001_49380 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 79 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 29/74 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+ + P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVE 65 Query: 72 FFFDVSPTVCSDIS 85 F + D Sbjct: 66 EIFTLVEGEEDDEE 79 >gi|198277577|ref|ZP_03210108.1| hypothetical protein BACPLE_03799 [Bacteroides plebeius DSM 17135] gi|198270075|gb|EDY94345.1| hypothetical protein BACPLE_03799 [Bacteroides plebeius DSM 17135] Length = 184 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 27/71 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR R L +S E + G+ + Q+ E G + S LQ I P+ Sbjct: 6 RQIGERIRGLRDALDLSVEDMAGQCGLPVDKYQQIESGECDIAVSTLQQIGRKCNVPLDV 65 Query: 73 FFDVSPTVCSD 83 + Sbjct: 66 LMFGEEPKMNA 76 >gi|170761242|ref|YP_001785744.1| TPR repeat-containing DNA binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169408231|gb|ACA56642.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 434 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++E L + I +F Sbjct: 6 LGEKIKRRRKELNMTLKDL-AGDRITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + T I N+ + D L + + Sbjct: 65 ESEDTQAEKICKYYENIAESHIINDNLNIAEQY 97 >gi|169828385|ref|YP_001698543.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] gi|168992873|gb|ACA40413.1| transcriptional regulator [Lysinibacillus sphaericus C3-41] Length = 194 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 23/66 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +R R MS E+L ++ + K E+G + L I L P+ Sbjct: 21 QVGMNLREIRKNKRMSLEELASVSNVSKLTLGKIERGETNPTVNILWKICRGLHIPLISL 80 Query: 74 FDVSPT 79 Sbjct: 81 LSFEEN 86 >gi|121593352|ref|YP_985248.1| XRE family transcriptional regulator [Acidovorax sp. JS42] gi|120605432|gb|ABM41172.1| putative transcriptional regulator, XRE family [Acidovorax sp. JS42] Length = 264 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 42/129 (32%), Gaps = 8/129 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG---VNRVGASRLQHISEVLESPIS 71 +G R+R R + +SQ + LG + +G N V + ++V E I Sbjct: 88 IGDRLRQARELCNLSQSVAAQRLGYSNSSKLSKVEGATDTNSVPLWLILRAAKVYEVSID 147 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 F F V+ + + + + ++++ + R + Sbjct: 148 FLFGVTDDWEVGAPRGTQEWLLNVWQKLRERDMAAL-----DHLHREVLAVSRHTAALVA 202 Query: 132 KYRTIEEEC 140 R + E Sbjct: 203 GVREVAEGL 211 >gi|15614377|ref|NP_242680.1| hypothetical protein BH1814 [Bacillus halodurans C-125] gi|10174432|dbj|BAB05533.1| BH1814 [Bacillus halodurans C-125] Length = 297 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 1/90 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +I+ R LG+SQ L E + T + EK +I++ L +P +F Sbjct: 6 VGHKIKTLRQSLGLSQRDLAEGI-CTQALISHIEKNKTTPTVDVFFNIAKKLGAPADYFL 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + I + + + + + Sbjct: 65 ETHDNSLDYILEVQYQIRKQVQEHNYEEAL 94 >gi|332685598|ref|YP_004455372.1| XRE family transcriptional regulator [Melissococcus plutonius ATCC 35311] gi|332369607|dbj|BAK20563.1| transcriptional regulator, XRE family [Melissococcus plutonius ATCC 35311] Length = 193 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/86 (13%), Positives = 31/86 (36%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ +R G +Q+++ + L I+ Q + +E + L +S+ + + Sbjct: 7 LKKKRQERGETQQQVADMLHISRQSISNWENNKSYPDVPTLIELSQYFDFSLDVLKGDDD 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLN 104 + E + + L L Sbjct: 67 LMKKIKKDYEFIHKEKENKKYQLYLM 92 >gi|309798569|ref|ZP_07692844.1| conserved domain protein [Streptococcus infantis SK1302] gi|322387445|ref|ZP_08061055.1| transcriptional regulator [Streptococcus infantis ATCC 700779] gi|308117805|gb|EFO55206.1| conserved domain protein [Streptococcus infantis SK1302] gi|321141974|gb|EFX37469.1| transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 69 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R+ L M+Q L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVELDMTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRCLGKTLDQLFWEE 65 Query: 78 PTVC 81 Sbjct: 66 EDEK 69 >gi|302871197|ref|YP_003839833.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302574056|gb|ADL41847.1| helix-turn-helix domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 140 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 55/129 (42%), Gaps = 16/129 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I + R +SQ++L + L I+ Q + YEKG G + L +SE L+ I F Sbjct: 12 ELGLKIGILREEKRISQKELAKRLEISPQALANYEKGKRMPGINILVRLSEELDVSIDFL 71 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 ++ I P + ++ ++ +++I+ L+ + + E + Sbjct: 72 LGLTD----------------IRKPRSRMVKEQLEMLESIQEKEEILSLIEELSNWEPEA 115 Query: 134 RTIEEECMV 142 I E + Sbjct: 116 VKIIERFLK 124 >gi|294631998|ref|ZP_06710558.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. e14] gi|292835331|gb|EFF93680.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. e14] Length = 509 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MADDYLVRIGKLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|260899786|ref|ZP_05908181.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus AQ4037] gi|308110450|gb|EFO47990.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus AQ4037] Length = 518 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 7/73 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G L+ ++EV Sbjct: 13 FLGTKIRNLRKNNHLTMEDLSARCVRINPEYAPSVSYLSMIERGKRVPSIDMLEVVAEVF 72 Query: 67 ESPISFFFDVSPT 79 + ++F D P Sbjct: 73 QKDPAWFLDDEPE 85 >gi|229163310|ref|ZP_04291262.1| Transcriptional regulator, MerR [Bacillus cereus R309803] gi|228620091|gb|EEK76965.1| Transcriptional regulator, MerR [Bacillus cereus R309803] Length = 194 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 33/92 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G IR R G++ ++ E G++ + + E S L+ IS L P+ + Sbjct: 14 MNIGSAIREIRQRRGITIAQICEGTGLSKGFMSQVENNKTSPSISTLETISNFLNVPLPY 73 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + E + ++ Sbjct: 74 LLLEQKDRLKVVKKVERKYSVYGKDEQRIEHV 105 >gi|254390574|ref|ZP_05005789.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|294815656|ref|ZP_06774299.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|326444005|ref|ZP_08218739.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197704276|gb|EDY50088.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] gi|294328255|gb|EFG09898.1| UDP-N-acetylglucosamine transferase [Streptomyces clavuligerus ATCC 27064] Length = 509 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MADDYLVRIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|167628192|ref|YP_001678691.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] gi|167590932|gb|ABZ82680.1| helix-turn-helix domain protein [Heliobacterium modesticaldum Ice1] Length = 193 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 28/70 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R +SQ +LG LG++ + YEK L +++ F + Sbjct: 7 ERLRGLRKGRKLSQNELGAALGLSRGSISYYEKQSRTAPIDVLYVVADYFNVSADFLLGL 66 Query: 77 SPTVCSDISS 86 DI+ Sbjct: 67 KEEPDPDIAQ 76 >gi|160943186|ref|ZP_02090422.1| hypothetical protein FAEPRAM212_00671 [Faecalibacterium prausnitzii M21/2] gi|158445425|gb|EDP22428.1| hypothetical protein FAEPRAM212_00671 [Faecalibacterium prausnitzii M21/2] Length = 392 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 39/71 (54%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ L R I +S KL E +G+T Q V +YE G+ + A ++ IS+ L+ P FFF+ Sbjct: 11 GMRLTLAREIQNISSPKLAEKIGVTKQTVSQYENGLIKPSADKVLAISQELKFPPKFFFE 70 Query: 76 VSPTVCSDISS 86 S S + Sbjct: 71 GSSDNFSPGVA 81 >gi|152982459|ref|YP_001354080.1| Cro/CI family transcriptional regulator [Janthinobacterium sp. Marseille] gi|151282536|gb|ABR90946.1| transcriptional regulator, Cro/CI family [Janthinobacterium sp. Marseille] Length = 221 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 32/84 (38%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +++ +G+R+ R G +Q++L G T + K E L I++ L + Sbjct: 14 SDIELRLGRRVSELRTARGYTQDRLASETGFTKGYLSKIENSKIIPPIGTLIKIAQALHT 73 Query: 69 PISFFFDVSPTVCSDISSEENNVM 92 ++ SD + Sbjct: 74 DLAELLGTETAERSDAICIVRSWE 97 >gi|118444959|ref|YP_878922.1| transcriptional regulator [Clostridium novyi NT] gi|118135415|gb|ABK62459.1| transcriptional regulator, putative [Clostridium novyi NT] Length = 212 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L +SQE+L E + +T Q + +E + L +S + + Sbjct: 23 QIKKYRTNLNLSQEELAEKVYVTRQTISNWENNKSYPDIHSLLLLSSLFNISLDQLIKGD 82 >gi|90410131|ref|ZP_01218148.1| Hypothetical transcriptional regulator [Photobacterium profundum 3TCK] gi|90329484|gb|EAS45741.1| Hypothetical transcriptional regulator [Photobacterium profundum 3TCK] Length = 99 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++I+ R ++Q + + L ++ Q E G L I+ V I FF+ Sbjct: 5 ISEKIKTARTSRDITQVDMAKKLNLSRQTYLNLETGKTSPRCDMLLDIANVTGYEIGFFY 64 Query: 75 DVSPTVCSDI 84 Sbjct: 65 TREEGKEHPD 74 >gi|20065987|ref|NP_612853.1| putative CI-like transcriptional repressor [Clostridium phage phi3626] gi|168211659|ref|ZP_02637284.1| helix-turn-helix domain protein [Clostridium perfringens B str. ATCC 3626] gi|19908318|gb|AAL96794.1| putative CI-like transcriptional repressor [Clostridium phage phi3626] gi|170710397|gb|EDT22579.1| helix-turn-helix domain protein [Clostridium perfringens B str. ATCC 3626] Length = 240 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 44/99 (44%), Gaps = 1/99 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +N+G+RI+ +R +G++ +++ + L V +YE + + S L+ ++E+L++ S Sbjct: 1 MNIGQRIKEKRKSMGLTVDEVAKKLNKNRATVYRYESNDIENLPISILEPLAEILQTTPS 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + + + + R F +I Sbjct: 61 YLMGWEDNELNSYENLNKSKKLKELILSRYNSIREFSKI 99 >gi|332533207|ref|ZP_08409074.1| repressor protein [Pseudoalteromonas haloplanktis ANT/505] gi|332037286|gb|EGI73741.1| repressor protein [Pseudoalteromonas haloplanktis ANT/505] Length = 66 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 23/64 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I R G+SQ+ L + + ++ + + E I++ + + F + Sbjct: 3 NKIAKYRKEAGLSQQDLADLIAVSRKTISTVETARFTPSVIIALKIAKHFNTSVESLFVL 62 Query: 77 SPTV 80 Sbjct: 63 DKND 66 >gi|323443643|gb|EGB01257.1| transcriptional regulator [Staphylococcus aureus O46] Length = 391 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE S++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|318062399|ref|ZP_07981120.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actG] gi|318077608|ref|ZP_07984940.1| XRE family transcriptional regulator [Streptomyces sp. SA3_actF] Length = 398 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 2/105 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R G SQ + GI+ + + E G + L ++ L P+ Sbjct: 4 LGAKVRHYRQRGGRSQAVIAGLCGISDRYLSLIENGRAEPSLAVLTSLAAELGVPVGALL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 D + + + + G R + +R+++ Sbjct: 64 DGPQPGPEPVPTTVSAGVAQALMGHGRP--RSEEAVTPAALRERV 106 >gi|331673630|ref|ZP_08374393.1| putative transcription regulator [Escherichia coli TA280] gi|331068903|gb|EGI40295.1| putative transcription regulator [Escherichia coli TA280] Length = 154 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 40/112 (35%), Gaps = 1/112 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R+ +G+SQE + G + + E+G + ++ +++ L Sbjct: 10 GQRVKEFRIAIGLSQEAFADRCGFARSYMSRIERGCSNASLDAIEVLADALRIEPWQLLA 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFI-QIDDVKVRQKIIELVRSI 126 D D GL R ++ + +++ ++ Sbjct: 70 SDSRKPDDQEVLVPYAADGSCFHPGLASTRDGSFRVGEKSAQKRFSSFNEAL 121 >gi|307305919|ref|ZP_07585665.1| helix-turn-helix domain protein [Shewanella baltica BA175] gi|306911412|gb|EFN41838.1| helix-turn-helix domain protein [Shewanella baltica BA175] Length = 510 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A L I+ V Sbjct: 13 FLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAGMLAVIAAVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + +F D P + Sbjct: 73 QKDADWFLDDVPEESAITPD 92 >gi|304314800|ref|YP_003849947.1| transcriptional regulator [Methanothermobacter marburgensis str. Marburg] gi|302588259|gb|ADL58634.1| predicted transcriptional regulator [Methanothermobacter marburgensis str. Marburg] Length = 190 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R ++ E+L E G+ + ++K E+G + L IS L + Sbjct: 6 VGERIKQLRDNQNITLEELAERSGVNRELIKKIEEGDILPSLTPLIKISRTLGVRLGTLL 65 Query: 75 DV 76 D Sbjct: 66 DD 67 >gi|262197634|ref|YP_003268843.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262080981|gb|ACY16950.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 147 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 2/133 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + ++G R R LG++QE E L ++ + + E+G + L I+ VL Sbjct: 1 MNKELAKSIGSAARQARTALGLTQEDAAERLDVSVEFYARIERGNSLPSVPTLARIAAVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +P + +S + + ++ ++ + + L++ I Sbjct: 61 GVSADALLGRAP--FAPGASATWMQVAPPADTPEVRRVVRMLRRASPGSVRLVSMLLKEI 118 Query: 127 VSSEKKYRTIEEE 139 + E Sbjct: 119 DRRLQAVSAEPTE 131 >gi|262164343|ref|ZP_06032081.1| predicted transcriptional regulator [Vibrio mimicus VM223] gi|262026723|gb|EEY45390.1| predicted transcriptional regulator [Vibrio mimicus VM223] Length = 207 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|302557707|ref|ZP_07310049.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseoflavus Tu4000] gi|302475325|gb|EFL38418.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseoflavus Tu4000] Length = 509 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E L + V + E+G + + I E L Sbjct: 1 MSDDYLVRIGKLIRDARQHRGWTQTQLAEALNTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|226357938|ref|YP_002787678.1| transcriptional regulator, XRE Family [Deinococcus deserti VCD115] gi|226320181|gb|ACO48174.1| putative transcriptional regulator, XRE Family [Deinococcus deserti VCD115] Length = 129 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/124 (10%), Positives = 39/124 (31%), Gaps = 15/124 (12%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R G+ + + I+ + E+G LQ ++ + + Sbjct: 5 ERLRELRQERGLRLKDIAGAAQISVPYLSDLERGRTNPSLETLQSLASTYGITVHDLLEG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII-ELVRSIVSSEKKYRT 135 + + + I D + ++ + +R++ E + + Sbjct: 65 VEFYGDQTAGALPQGLADL--------------IADPALGAQLTPDWIRTLARIELRGKR 110 Query: 136 IEEE 139 ++ Sbjct: 111 PRDK 114 >gi|254463197|ref|ZP_05076613.1| helix-turn-helix domain protein [Rhodobacterales bacterium HTCC2083] gi|206679786|gb|EDZ44273.1| helix-turn-helix domain protein [Rhodobacteraceae bacterium HTCC2083] Length = 454 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 30/76 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR+I GM Q L I+ + E R+G L I+ VL+ S Sbjct: 4 DTLTGSRIRERRLIQGMKQADLARRTEISASYLNLIEHNRRRIGGKLLLSIAAVLDVEAS 63 Query: 72 FFFDVSPTVCSDISSE 87 + + E Sbjct: 64 ALSEGAEAALLASLRE 79 >gi|168178698|ref|ZP_02613362.1| transcriptional regulator [Clostridium botulinum NCTC 2916] gi|182671003|gb|EDT82977.1| transcriptional regulator [Clostridium botulinum NCTC 2916] Length = 170 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++++ R +S L E GI + K E G ++ LQ I++ ++ PI Sbjct: 1 MEISEKLKDLRTFKNLSTYDLAEKTGIPQSTISKLENGNRKIDTDILQKIADAMDVPIDI 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|153939757|ref|YP_001389775.1| TPR repeat-containing DNA binding protein [Clostridium botulinum F str. Langeland] gi|170755693|ref|YP_001780059.1| TPR repeat-containing DNA binding protein [Clostridium botulinum B1 str. Okra] gi|152935653|gb|ABS41151.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum F str. Langeland] gi|169120905|gb|ACA44741.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum B1 str. Okra] gi|295317864|gb|ADF98241.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum F str. 230613] Length = 434 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++E L + I +F Sbjct: 6 LGEKIKRRRKELNMTLKDL-AGDRITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + T I N+ + D L + + Sbjct: 65 ESEDTQAEKICKYYENIAESHIINDNLNIAEQY 97 >gi|222054633|ref|YP_002536995.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] gi|221563922|gb|ACM19894.1| transcriptional regulator, XRE family [Geobacter sp. FRC-32] Length = 209 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 37/112 (33%), Gaps = 14/112 (12%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K++ + +G RI+ R M+Q++ + LGI + E+G V + + Sbjct: 1 MSEKEM----NCRMGLRIKEIRQAKDMTQKEFADSLGIVQGFLSGVERGKKNVSDTLIIA 56 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + + ++ E + + F +I Sbjct: 57 LCHSYGINKEWLKTGYGEKFRELQIEASRPSN----------VPLFKKIPQD 98 >gi|323489112|ref|ZP_08094346.1| ans operon repressor protein [Planococcus donghaensis MPA1U2] gi|323397235|gb|EGA90047.1| ans operon repressor protein [Planococcus donghaensis MPA1U2] Length = 123 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++IR R +S + L LGI V YE G +V S LQ +++ + + + Sbjct: 4 IGQKIRELREDHQLSVDDLASQLGIAKSVVWGYESGKKQVSVSHLQLLADYFKVTVDYIL 63 Query: 75 DVSPTVCS 82 + + Sbjct: 64 ERNQPTNQ 71 >gi|317490340|ref|ZP_07948825.1| hypothetical protein HMPREF1023_02525 [Eggerthella sp. 1_3_56FAA] gi|325833363|ref|ZP_08165812.1| putative ATP synthase F0, A subunit [Eggerthella sp. HGA1] gi|316910554|gb|EFV32178.1| hypothetical protein HMPREF1023_02525 [Eggerthella sp. 1_3_56FAA] gi|325485287|gb|EGC87756.1| putative ATP synthase F0, A subunit [Eggerthella sp. HGA1] Length = 394 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + R G++QE L E L ++ Q V K++ G N +L + ++ + + S Sbjct: 6 NLVYLRQHYGITQEGLAEQLSVSRQTVSKWKAGTNYPEMDKLLQLCDLFHTSLDDLMRGS 65 Query: 78 PTVCSDISSEENNVM 92 V + +E + Sbjct: 66 VHVVKENDTERYDEH 80 >gi|304436877|ref|ZP_07396841.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370076|gb|EFM23737.1| XRE family transcriptional regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 86 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R +Q++ G+T + Q +E G + L +++ + + + S Sbjct: 8 LRAIRKERKHTQKEAAAAAGVTERNYQDWEYGKTKPTFDTLIALADYFDVSLDYLVGRSD 67 Query: 79 TVCSDISSEEN 89 S E Sbjct: 68 NPTISRQSNER 78 >gi|302335525|ref|YP_003800732.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301319365|gb|ADK67852.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 398 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 48/115 (41%), Gaps = 1/115 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G I R + G +Q++L E LG++ V K+E G + + L I+ + Sbjct: 5 VSIGSVIARERRLRGDTQQELAERLGVSKAAVSKWEVGQSIPDVTLLPRIAAYFSLTLDE 64 Query: 73 FFDVSPT-VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 F ++++ + + L+R + D +++ ++ S+ Sbjct: 65 LFGYRSVLSNEEVATLYAELRAKAARDQSSALDRLREAVQDHYADCRLLVMMASL 119 >gi|302873056|ref|YP_003841689.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] gi|307688788|ref|ZP_07631234.1| transcriptional regulator, XRE family protein [Clostridium cellulovorans 743B] gi|302575913|gb|ADL49925.1| transcriptional regulator, XRE family [Clostridium cellulovorans 743B] Length = 67 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R+ G++QE+L + + +T Q + E G I L ++ F Sbjct: 4 NKIKTARVEKGITQEELADMIKVTRQTISLIESGKYNPTLKLCISICLALGKTLNDLFWE 63 Query: 77 SP 78 Sbjct: 64 EE 65 >gi|257792471|ref|YP_003183077.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476368|gb|ACV56688.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 395 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 32/75 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + R G++QE L E L ++ Q V K++ G N +L + ++ + + S Sbjct: 6 NLVYLRQHYGITQEGLAEQLSVSRQTVSKWKAGTNYPEMDKLLQLCDLFHTSLDDLMRGS 65 Query: 78 PTVCSDISSEENNVM 92 V + +E + Sbjct: 66 VHVVKENDTERYDEH 80 >gi|227520115|ref|ZP_03950164.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX0104] gi|227554980|ref|ZP_03985027.1| Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|229546714|ref|ZP_04435439.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX1322] gi|255971323|ref|ZP_05421909.1| predicted protein [Enterococcus faecalis T1] gi|255973942|ref|ZP_05424528.1| predicted protein [Enterococcus faecalis T2] gi|256617741|ref|ZP_05474587.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256761627|ref|ZP_05502207.1| predicted protein [Enterococcus faecalis T3] gi|256957270|ref|ZP_05561441.1| predicted protein [Enterococcus faecalis DS5] gi|256959996|ref|ZP_05564167.1| predicted protein [Enterococcus faecalis Merz96] gi|256964308|ref|ZP_05568479.1| predicted protein [Enterococcus faecalis HIP11704] gi|257077756|ref|ZP_05572117.1| predicted protein [Enterococcus faecalis JH1] gi|257081116|ref|ZP_05575477.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|257083785|ref|ZP_05578146.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|257086210|ref|ZP_05580571.1| predicted protein [Enterococcus faecalis D6] gi|257089282|ref|ZP_05583643.1| predicted protein [Enterococcus faecalis CH188] gi|257415435|ref|ZP_05592429.1| predicted protein [Enterococcus faecalis AR01/DG] gi|257418466|ref|ZP_05595460.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|293383748|ref|ZP_06629655.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|293388776|ref|ZP_06633269.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|307267947|ref|ZP_07549335.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307271869|ref|ZP_07553137.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|307277295|ref|ZP_07558398.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307278434|ref|ZP_07559509.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|307286678|ref|ZP_07566764.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|307292450|ref|ZP_07572305.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312901588|ref|ZP_07760861.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|312904430|ref|ZP_07763589.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|312907036|ref|ZP_07766032.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312952861|ref|ZP_07771723.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|312978706|ref|ZP_07790433.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|227072459|gb|EEI10422.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX0104] gi|227175889|gb|EEI56861.1| Cro/CI family transcriptional regulator [Enterococcus faecalis HH22] gi|229308174|gb|EEN74161.1| Cro/CI family transcriptional regulator [Enterococcus faecalis TX1322] gi|255962341|gb|EET94817.1| predicted protein [Enterococcus faecalis T1] gi|255966814|gb|EET97436.1| predicted protein [Enterococcus faecalis T2] gi|256597268|gb|EEU16444.1| predicted protein [Enterococcus faecalis ATCC 4200] gi|256682878|gb|EEU22573.1| predicted protein [Enterococcus faecalis T3] gi|256947766|gb|EEU64398.1| predicted protein [Enterococcus faecalis DS5] gi|256950492|gb|EEU67124.1| predicted protein [Enterococcus faecalis Merz96] gi|256954804|gb|EEU71436.1| predicted protein [Enterococcus faecalis HIP11704] gi|256985786|gb|EEU73088.1| predicted protein [Enterococcus faecalis JH1] gi|256989146|gb|EEU76448.1| cro/CI family transcriptional regulator [Enterococcus faecalis E1Sol] gi|256991815|gb|EEU79117.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|256994240|gb|EEU81542.1| predicted protein [Enterococcus faecalis D6] gi|256998094|gb|EEU84614.1| predicted protein [Enterococcus faecalis CH188] gi|257157263|gb|EEU87223.1| predicted protein [Enterococcus faecalis ARO1/DG] gi|257160294|gb|EEU90254.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|291078824|gb|EFE16188.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis R712] gi|291081933|gb|EFE18896.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis S613] gi|306496495|gb|EFM66057.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306502156|gb|EFM71440.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306504940|gb|EFM74135.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306506029|gb|EFM75196.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306511375|gb|EFM80377.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|306515588|gb|EFM84115.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|310627021|gb|EFQ10304.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|310629377|gb|EFQ12660.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310632128|gb|EFQ15411.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|311288413|gb|EFQ66969.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|311291383|gb|EFQ69939.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|315027056|gb|EFT38988.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315029041|gb|EFT40973.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315032500|gb|EFT44432.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315034266|gb|EFT46198.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315145162|gb|EFT89178.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315148028|gb|EFT92044.1| helix-turn-helix protein [Enterococcus faecalis TX4244] gi|315149631|gb|EFT93647.1| helix-turn-helix protein [Enterococcus faecalis TX0012] gi|315152943|gb|EFT96959.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315155174|gb|EFT99190.1| helix-turn-helix protein [Enterococcus faecalis TX0043] gi|315157502|gb|EFU01519.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315163070|gb|EFU07087.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315165270|gb|EFU09287.1| helix-turn-helix protein [Enterococcus faecalis TX1302] gi|315167995|gb|EFU12012.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|315171773|gb|EFU15790.1| helix-turn-helix protein [Enterococcus faecalis TX1342] gi|315174886|gb|EFU18903.1| helix-turn-helix protein [Enterococcus faecalis TX1346] gi|315574217|gb|EFU86408.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315577347|gb|EFU89538.1| helix-turn-helix protein [Enterococcus faecalis TX0630] gi|315581640|gb|EFU93831.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|327534452|gb|AEA93286.1| cro/CI family transcriptional regulator [Enterococcus faecalis OG1RF] gi|329577861|gb|EGG59282.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 101 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I + R + M+Q+ L +G++ Q + + E+ I+ V I F Sbjct: 32 IHVYRAMARMTQQDLANRVGVSRQTIIQLERNKYNPSLLLAHDIANVFGVTIDDVFTFKE 91 Query: 79 TVCSDISSEE 88 T+ D+ E Sbjct: 92 TLNDDVEQEA 101 >gi|225868447|ref|YP_002744395.1| transcriptional regulator [Streptococcus equi subsp. zooepidemicus] gi|225870630|ref|YP_002746577.1| transcriptional regulator [Streptococcus equi subsp. equi 4047] gi|225700034|emb|CAW94064.1| putative transcriptional regulator [Streptococcus equi subsp. equi 4047] gi|225701723|emb|CAW99080.1| putative transcriptional regulator [Streptococcus equi subsp. zooepidemicus] Length = 65 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 22/63 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G++QE+L L ++ Q + E G I++ I F Sbjct: 3 NRLEEIRKENGITQEELASILEVSRQTIGSLENGRYNPSIILAFKIAKYFSLSIEDIFIY 62 Query: 77 SPT 79 Sbjct: 63 EEE 65 >gi|167760985|ref|ZP_02433112.1| hypothetical protein CLOSCI_03383 [Clostridium scindens ATCC 35704] gi|167661364|gb|EDS05494.1| hypothetical protein CLOSCI_03383 [Clostridium scindens ATCC 35704] Length = 166 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + + + R + G SQE++ E + I+ Q K+E G + ++EV I Sbjct: 21 ENLIMLRKLKGFSQEEIAEKIDISRQAYGKWESGETIPDIEKCALLAEVYGITIDSLIRE 80 Query: 77 SPTVCSDISSEENNVMDF 94 + ++ F Sbjct: 81 YQVENTPMAPAPEGKHIF 98 >gi|16079688|ref|NP_390512.1| Xre family transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|221310566|ref|ZP_03592413.1| hypothetical protein Bsubs1_14416 [Bacillus subtilis subsp. subtilis str. 168] gi|221314890|ref|ZP_03596695.1| hypothetical protein BsubsN3_14337 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319812|ref|ZP_03601106.1| hypothetical protein BsubsJ_14253 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324091|ref|ZP_03605385.1| hypothetical protein BsubsS_14387 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312135|ref|YP_004204422.1| putative Xre family transcriptional regulator [Bacillus subtilis BSn5] gi|1176724|sp|P45902|YQAE_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator yqaE gi|1217833|dbj|BAA06918.1| ORF7 [Bacillus subtilis] gi|1303723|dbj|BAA12379.1| YqaE [Bacillus subtilis] gi|2635080|emb|CAB14576.1| putative transcriptional regulator (Xre family); skin element [Bacillus subtilis subsp. subtilis str. 168] gi|320018409|gb|ADV93395.1| putative transcriptional regulator (Xre family); skin element [Bacillus subtilis BSn5] Length = 116 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 41/108 (37%), Gaps = 6/108 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R ++Q+ + + LGIT YE G L +IS +L+ + + Sbjct: 4 ENLKKCRKQKKLTQQNMADKLGITRPAYTAYELGSREPDYKTLINISNILDVSLDYLLKG 63 Query: 77 SP------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + ++ + ++ + ++I +++++ Sbjct: 64 ESNEKVFQDEAKKVLNDPETFLAAKDGEVTDEILQAALEIITEQLKER 111 >gi|15668446|ref|NP_247244.1| repressor protein YorfE [Methanocaldococcus jannaschii DSM 2661] gi|1590997|gb|AAB98257.1| repressor protein, putative (yorfE) [Methanocaldococcus jannaschii DSM 2661] Length = 79 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R + ++QE L + LG++ Q + EKG I++ I F Sbjct: 16 NKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIFIY 75 Query: 77 SPTV 80 Sbjct: 76 EDDE 79 >gi|89073167|ref|ZP_01159706.1| transcriptional regulator, putative [Photobacterium sp. SKA34] gi|89051120|gb|EAR56577.1| transcriptional regulator, putative [Photobacterium sp. SKA34] Length = 106 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 9/107 (8%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLE 67 D + R++ R +SQ++LG +GI + +YEKG + S L+ +++ L Sbjct: 4 DNPIPVRLKEIRKKTKISQKELGIRIGIDESSASARMNQYEKGKHTPDISTLKKMADELG 63 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 P+++FF + + +S L + I + + Sbjct: 64 VPLNYFFCEDESSAELTIAISK-----LSIKQRKLLLKLIADISNEE 105 >gi|315182632|gb|ADT89545.1| transcriptional regulator, HTH_3 family [Vibrio furnissii NCTC 11218] Length = 207 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGQRIKDIRAKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|284008333|emb|CBA74709.1| phage transcriptional regulator [Arsenophonus nasoniae] Length = 230 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R+ M+Q +L E L +T Q VQ++E +RL I++VL+ +++ Sbjct: 6 ERIKQARLAKKMTQAELAEKLSVTPQSVQQWETST-EPKKNRLMKIADVLDINVNWLLFG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQL 103 + N + + L Sbjct: 65 EKKNKDGRLKNKMNFREISEWDESTPL 91 >gi|264679862|ref|YP_003279771.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262210377|gb|ACY34475.1| transcriptional regulator, XRE family [Comamonas testosteroni CNB-2] Length = 104 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 49/100 (49%), Gaps = 9/100 (9%) Query: 16 GKRIRLRRMILGMSQEKLGEC----LGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+R++ R+ G+SQ+ LG + ++ +YE G+++ ++ ++ VL P++ Sbjct: 9 GERLKQARLAAGLSQKMLGIEAGLDPFVASTRINRYELGIHKPDLLTVRKLATVLRVPVA 68 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 FF+ + +++ + +++ + + R + I Sbjct: 69 FFYADTDDEIAELL-----LRYGLTSKEIREKIRNLLAIS 103 >gi|260770117|ref|ZP_05879050.1| predicted transcriptional regulator [Vibrio furnissii CIP 102972] gi|260615455|gb|EEX40641.1| predicted transcriptional regulator [Vibrio furnissii CIP 102972] Length = 207 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGQRIKDIRAKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|226947857|ref|YP_002802948.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226844191|gb|ACO86857.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 130 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 1/94 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FD 75 ++ R G+SQ++LG L ++ Q + K+E G +L + + E + D Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDELVMD 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 V + N + I + + + + Sbjct: 65 VKAKESTKTEPLVMNRFETIIDSIDRENVKMYTK 98 >gi|187776986|ref|ZP_02993459.1| hypothetical protein CLOSPO_00531 [Clostridium sporogenes ATCC 15579] gi|187773914|gb|EDU37716.1| hypothetical protein CLOSPO_00531 [Clostridium sporogenes ATCC 15579] Length = 434 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++E L + I +F Sbjct: 6 LGEKIKRRRKELNMTLKDL-AGDRITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 75 DVSPTVCSDISSEENNVMD 93 + T I N+ + Sbjct: 65 ESEDTQAEKICKYYENIAE 83 >gi|187921899|ref|YP_001893488.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] gi|187720337|gb|ACD21559.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 79 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 25/67 (37%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +P + GK +R R GMSQ L + + E+G + +++ L Sbjct: 1 MNSPANYAFGKALRSLRARRGMSQYSLANEANLDRSYISLLERGHRSPTLETMCSLAQAL 60 Query: 67 ESPISFF 73 I Sbjct: 61 NVSIGEM 67 >gi|158522991|ref|YP_001530861.1| helix-turn-helix domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158511817|gb|ABW68784.1| helix-turn-helix domain protein [Desulfococcus oleovorans Hxd3] Length = 387 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ IR R G + +L +G+ + + E+G N A+ + +S L + Sbjct: 10 FIGRNIRKLRRQRGWTISRLAGEIGMAEIPLGRIERGGNAPSAAVIFQLSRALGVSVDTL 69 Query: 74 FDVSPTV 80 F + Sbjct: 70 FAEDESD 76 >gi|160895617|ref|YP_001561199.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361201|gb|ABX32814.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 227 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 43/117 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG ++R R G++ +++ E G+ + K E+G + ++ + L+ ++ Sbjct: 45 EVGAKLRKARKERGLTLQQVAESSGLAVSTISKAERGQIALSYEKVLMLGNALDIDMTRL 104 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F V + + F + + +K+ LV I + E Sbjct: 105 FMVGDAQQAAGDTPTVVKDCFEDVQRYETDQYLYSVLCGAFPGKKMQPLVAVINARE 161 >gi|16126471|ref|NP_421035.1| Cro/CI family transcriptional regulator [Caulobacter crescentus CB15] gi|221235251|ref|YP_002517688.1| Cro/CI family transcriptional regulator [Caulobacter crescentus NA1000] gi|13423739|gb|AAK24203.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus CB15] gi|220964424|gb|ACL95780.1| transcriptional regulator, Cro/CI family [Caulobacter crescentus NA1000] Length = 64 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R SQ L + L ++ Q + E G I+ + PI F Sbjct: 3 NRLKVLRAERDWSQADLADRLEVSRQTINALETGKYDPSLPLAFKIARLFGQPIESIFQD 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|16759882|ref|NP_455499.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142345|ref|NP_805687.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161613269|ref|YP_001587234.1| hypothetical protein SPAB_00979 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|213162107|ref|ZP_03347817.1| hypothetical protein Salmoneentericaenterica_19774 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424625|ref|ZP_03357408.1| hypothetical protein SentesTyphi_02471 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581901|ref|ZP_03363727.1| hypothetical protein SentesTyph_12144 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213615676|ref|ZP_03371502.1| hypothetical protein SentesTyp_14844 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648031|ref|ZP_03378084.1| hypothetical protein SentesTy_12529 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213854860|ref|ZP_03383100.1| hypothetical protein SentesT_12555 [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289823906|ref|ZP_06543506.1| hypothetical protein Salmonellentericaenterica_01524 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25359245|pir||AD0618 probable DNA-binding protein STY1020 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502175|emb|CAD05414.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137975|gb|AAO69536.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161362633|gb|ABX66401.1| hypothetical protein SPAB_00979 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 134 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 3/129 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ G++Q +LG +G T Q V + + L+ + + P+ +FF Sbjct: 4 GERLQRVLNETGITQSELGRRVGATSQSVNGWCQSGILPRKDILELLPKATGKPLYWFFM 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV-RSIVSSEKKYR 134 ++ +L F Q+ V+ + + IEL + + Sbjct: 64 EDDDESDVPERLTQGGPTDLNDRQ-KRLLEIFDQLPTVE-QDRFIELAGTRLQELDDFMA 121 Query: 135 TIEEECMVE 143 + +E Sbjct: 122 EYQRRRKIE 130 >gi|262282005|ref|ZP_06059774.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] gi|262262459|gb|EEY81156.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA] Length = 190 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 39/82 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R+ GM+Q++L + +G+T Q + YEKG RL+ I++ L+ + F + Sbjct: 18 IKSARLKAGMTQKELAKIIGVTKQTIINYEKGTTDPSWERLEDIAKALKVDVDALFPYNE 77 Query: 79 TVCSDISSEENNVMDFISTPDG 100 + + ++ ++ Sbjct: 78 FGEMKGDVKWADHLERLANDWH 99 >gi|229827176|ref|ZP_04453245.1| hypothetical protein GCWU000182_02561 [Abiotrophia defectiva ATCC 49176] gi|229788794|gb|EEP24908.1| hypothetical protein GCWU000182_02561 [Abiotrophia defectiva ATCC 49176] Length = 109 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 15/124 (12%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + ++I +GK+I+ R+ GM+QE+L E L + YE + S L+ I+++L Sbjct: 1 MERKMEITLGKKIKEYRLKRGMTQEELAERLFSRKSTISDYENDKIDIKISILREIAKIL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P+ F D +Q+ QI ++R+ I+ V + Sbjct: 61 GMPLFCFLCEQNADTDDEI---------------MQMAMALKQIKSKELRKAAIKQVMIL 105 Query: 127 VSSE 130 E Sbjct: 106 AEME 109 >gi|254513703|ref|ZP_05125766.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221531933|gb|EEE34990.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 209 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 43/103 (41%), Gaps = 10/103 (9%) Query: 1 MVGN-KKIPNPV---------DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 M N + P+ V ++ +G+ +R R ++ +L + G++ + K E G Sbjct: 1 MAANLTQNPHSVRSGDREKVLEVAIGREVRAFRKQQNITVAELAQLTGLSIGMLSKIENG 60 Query: 51 VNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 + LQ +++ L P++ FF + ++ ++ Sbjct: 61 NTSPSLTTLQSLADALSVPLTSFFRQFEERREAVHTKAGEGVE 103 >gi|281418200|ref|ZP_06249220.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|281409602|gb|EFB39860.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] Length = 376 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 31/74 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ + I R G++QE + +G++ V K+E G + + L ++ + I Sbjct: 6 INIARTIVKMRREKGLTQEDIANYIGVSKASVSKWETGQSYPDITFLPQLATLFNISIDE 65 Query: 73 FFDVSPTVCSDISS 86 P + + Sbjct: 66 LMGYEPQMSKEDIR 79 >gi|194430430|ref|ZP_03062914.1| conserved hypothetical protein [Escherichia coli B171] gi|218695476|ref|YP_002403143.1| conserved hypothetical protein; putative regulator [Escherichia coli 55989] gi|260855849|ref|YP_003229740.1| putative phage repressor protein [Escherichia coli O26:H11 str. 11368] gi|331683418|ref|ZP_08384019.1| putative transcriptional regulator [Escherichia coli H299] gi|194411536|gb|EDX27874.1| conserved hypothetical protein [Escherichia coli B171] gi|195182943|dbj|BAG66509.1| probable transcriptional regulator [Escherichia coli O111:H-] gi|218352208|emb|CAU97954.1| conserved hypothetical protein; putative regulator [Escherichia coli 55989] gi|257754498|dbj|BAI26000.1| putative phage repressor protein [Escherichia coli O26:H11 str. 11368] gi|323152671|gb|EFZ38946.1| transcriptional regulator, XRE family [Escherichia coli EPECa14] gi|331079633|gb|EGI50830.1| putative transcriptional regulator [Escherichia coli H299] Length = 134 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 16/126 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R LG+SQ + + G+ +YEKG + A+ L +S + + Sbjct: 5 IGQRLREERERLGLSQVAMSDIGGVKKLTQLRYEKGDSFPDAAYLAALSR-FGLDVQYVV 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + E+ +L F + + V+ +I ++ SEK+ + Sbjct: 64 LGIHSPETYNDDEQ-------------ELITRF-RAASLDVKNAVIGALKG-AISEKETQ 108 Query: 135 TIEEEC 140 E Sbjct: 109 PSGREL 114 >gi|170723125|ref|YP_001750813.1| putative phage repressor [Pseudomonas putida W619] gi|169761128|gb|ACA74444.1| putative phage repressor [Pseudomonas putida W619] Length = 259 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +RIR R+ G++Q L E +GI + + E G + +S L I+ ++ Sbjct: 1 MKLSERIRAARLHAGLTQRDLAEKIGIAQTAISQLESGKTQ-RSSYLMAIASTCGVSSAW 59 Query: 73 FFDVSPTVCSDISSEEN 89 + T+ D +S E Sbjct: 60 LAEGWGTMLRDAASVEA 76 >gi|146280879|ref|YP_001171032.1| transcriptional regulator [Pseudomonas stutzeri A1501] gi|145569084|gb|ABP78190.1| probable transcriptional regulator [Pseudomonas stutzeri A1501] gi|327479148|gb|AEA82458.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 182 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 32/72 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGVRLQTIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLKKVLSGIPMSLVE 60 Query: 73 FFDVSPTVCSDI 84 FF SD Sbjct: 61 FFSPDFDQDSDT 72 >gi|110681030|ref|YP_684037.1| helix-turn-helix domain-containing protein [Roseobacter denitrificans OCh 114] gi|109457146|gb|ABG33351.1| helix-turn-helix domain protein, putative [Roseobacter denitrificans OCh 114] Length = 135 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 11/124 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R M+Q +L LG+ ++ +E ++ A+RL ++ +L + + + Sbjct: 16 GDRLAAARETSEMTQAELARRLGVRVATLRSWENDLSEPRANRLSMMAGLLNVSMMWLIN 75 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E S + L R ++R +I V + EKK R Sbjct: 76 GQGEGLDAPMEERAL---PASASEVLNEMR--------ELRTDMIARVEQMGRLEKKLRV 124 Query: 136 IEEE 139 + Sbjct: 125 ALRD 128 >gi|156522766|ref|YP_001429540.1| hypothetical protein pK214_p30 [Lactococcus lactis subsp. lactis K214] gi|257867222|ref|ZP_05646875.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257873557|ref|ZP_05653210.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|312902281|ref|ZP_07761489.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|2467236|emb|CAA63526.1| hypothetical protein [Lactococcus lactis subsp. lactis K214] gi|257801278|gb|EEV30208.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257807721|gb|EEV36543.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|283466088|emb|CBG92863.1| hypothetical protein [Enterococcus casseliflavus] gi|310634340|gb|EFQ17623.1| helix-turn-helix protein [Enterococcus faecalis TX0635] Length = 119 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 31/90 (34%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ KK +G I+ R+ G+++E++G + I + + E + + Sbjct: 1 MMDRKKHRTFDFKPLGLAIKEARLSKGLTREQVGSMIQIAPRYLTNIENKGQQPSFHVVY 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN 90 + +L + F + Sbjct: 61 DLVTLLNISLDGFILGEENSHKSSKRLQVE 90 >gi|119775778|ref|YP_928518.1| XRE family transcriptional regulator [Shewanella amazonensis SB2B] gi|119768278|gb|ABM00849.1| putative transcriptional regulator, XRE family [Shewanella amazonensis SB2B] Length = 182 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDIGASLKAVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLAGIPMSLVE 60 Query: 73 FFDVSPTVCSD 83 FF + + ++ Sbjct: 61 FFSIGDSASAE 71 >gi|114565053|ref|YP_752567.1| transcriptional regulator, XRE family protein [Shewanella frigidimarina NCIMB 400] gi|114336346|gb|ABI73728.1| transcriptional regulator, XRE family [Shewanella frigidimarina NCIMB 400] Length = 511 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 7/92 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRV 54 + N+K +G +IR R ++ E L + E+G Sbjct: 1 MRNEKSLMRKTHFLGTKIRNLRKRNNLTMEDLSARCVRVDSGNSPSVSYLSMIERGKRVP 60 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSDISS 86 A L I+ V + + +F D P + Sbjct: 61 SADMLAVIAVVFQKEVEWFLDDVPEDEAITPE 92 >gi|325104086|ref|YP_004273740.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] gi|324972934|gb|ADY51918.1| helix-turn-helix domain protein [Pedobacter saltans DSM 12145] Length = 113 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 9/117 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK+IRL R G SQE + + L I+ K E G+ V SRL+ IS + + + Sbjct: 4 LGKKIRLLRHQRGWSQEDVSKQLDISIPAFSKIETGITDVNLSRLEQISALFDMSVVELL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + + + ++ +++K+IEL I + Sbjct: 64 TYNDPEQEVKYASDLEIATKKLQERDAEVI---------DLQKKVIELYEEIRGMKS 111 >gi|304570593|ref|YP_389834.2| hypothetical protein Dde_3345 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 161 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 43/130 (33%), Gaps = 8/130 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG RI+ R + Q++ LGI + YE+ A + I++V + Sbjct: 1 MSVGNRIKQIRGR--IPQKEFAATLGIAQNTLGGYERDERTPNAEVIVSIAKVFNISFDW 58 Query: 73 FFDVSP------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + L+ ++ D K R+K LV+++ Sbjct: 59 LLTGEGCKYREQNAKLVQQPSPDTGAGPCQRCAKLEKELDDLRQDQRKEREKNDALVQAL 118 Query: 127 VSSEKKYRTI 136 + + Sbjct: 119 LKERDRLEEA 128 >gi|295107575|emb|CBL05118.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 143 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 43/115 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++I+ R G + ++L E LGI+ ++KYE G + I+ LE S Sbjct: 1 MKVGEKIQRIRKERGYTADQLAEMLGISAVSLRKYEYGERTPKDPMIDEIARCLEVNPSS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + +D + + + + + + L R++ Sbjct: 61 LKSDWGSDANDAIHMLFELEEAFCLEPIKVGGTVVLALPEDLGSEDQEALARALR 115 >gi|296101665|ref|YP_003611811.1| putative phage represso [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056124|gb|ADF60862.1| putative phage represso [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 256 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 42/101 (41%), Gaps = 4/101 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R++ R + G++Q+ LG+ +G++ +QK E G ++L ++ L+ + Sbjct: 27 LAERLKEARTLRGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKLVELANALKVKPEWLS 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + E D T ++ + D +V Sbjct: 86 SGEGAMLLTGQDEAIPPSDQWGT---VEPWDNSTPLPDDEV 123 >gi|260774236|ref|ZP_05883151.1| predicted transcriptional regulator [Vibrio metschnikovii CIP 69.14] gi|260611197|gb|EEX36401.1| predicted transcriptional regulator [Vibrio metschnikovii CIP 69.14] Length = 510 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 7/76 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G ++R R ++ E L + E+G L+ I+EV Sbjct: 13 FLGTKVRNLRKRNHLTMEDLSARCIRVNPEYAPSVSYLSMIERGKRVPSVEMLEVIAEVF 72 Query: 67 ESPISFFFDVSPTVCS 82 + +F D P Sbjct: 73 QKDPRWFLDDEPEQAD 88 >gi|257139965|ref|ZP_05588227.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 185 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 4/106 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F S Sbjct: 4 RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSES 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + S R + I +K++ V Sbjct: 64 RDRELITVTRAAQRAPMGSAAS----ARTYESIAAGVAPKKLLPFV 105 >gi|157373772|ref|YP_001472372.1| DNA-binding protein [Shewanella sediminis HAW-EB3] gi|157316146|gb|ABV35244.1| DNA-binding protein [Shewanella sediminis HAW-EB3] Length = 181 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 4/69 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + NP++ + I+ R ++Q +L E GI + E + S + +++ L Sbjct: 1 MANPIN----EGIKRLRAQHKLTQIELAEMAGIPRATLANMEGANSNPSISVVMKVAQAL 56 Query: 67 ESPISFFFD 75 + Sbjct: 57 GVTVDDLIT 65 >gi|149187584|ref|ZP_01865881.1| predicted transcriptional regulator [Vibrio shilonii AK1] gi|148838464|gb|EDL55404.1| predicted transcriptional regulator [Vibrio shilonii AK1] Length = 206 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L + F Sbjct: 27 LGERIKDIRAKLGLTLEEASQRTGLARSTLSKIENEQISPTFQAMQKLALGLHIDMPQLF 86 Query: 75 D 75 + Sbjct: 87 E 87 >gi|119472046|ref|ZP_01614304.1| Predicted transcriptional regulator [Alteromonadales bacterium TW-7] gi|119445181|gb|EAW26473.1| Predicted transcriptional regulator [Alteromonadales bacterium TW-7] Length = 66 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I R G+SQ++L + + ++ + + E I+ P+ F + Sbjct: 3 NNIAKFRKEAGLSQQELADAISVSRKTISTVETNRFTPSVIIALKIAANFNMPVESLFIL 62 Query: 77 SPTV 80 Sbjct: 63 EEAD 66 >gi|15900996|ref|NP_345600.1| transcriptional regulator [Streptococcus pneumoniae TIGR4] gi|14972607|gb|AAK75240.1| transcriptional regulator [Streptococcus pneumoniae TIGR4] Length = 282 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + VG+RI+ R+ G S EK GE + V +EKG N L I+ + + + Sbjct: 5 NKLVGERIQNIRLSHGDSMEKFGEKFNTSKGTVNNWEKGRNLPNKENLLKIASIGKMSVE 64 Query: 72 FFFDVS 77 Sbjct: 65 ELLYGD 70 >gi|71897954|ref|ZP_00680159.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1] gi|71732198|gb|EAO34253.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1] Length = 126 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 5/111 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFFD 75 +R+R R + ++QE L LG+T V ++E + L ++ + Sbjct: 8 ERVREARNLCSLTQEALASDLGVTRSAVAQWEMEQGTKPSVENLIALARRTGMAFEYLST 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ---LNRYFIQIDDVKVRQKIIELV 123 + Q L F ++ + R ++EL+ Sbjct: 68 GRGKPDCGKPISSISEPTPTYQKFDSQQKLLLEQFAKLT-PRQRSGLLELL 117 >gi|328956479|ref|YP_004373865.1| hypothetical protein CAR_c00980 [Carnobacterium sp. 17-4] gi|328672803|gb|AEB28849.1| hypothetical protein CAR_c00980 [Carnobacterium sp. 17-4] Length = 66 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R+ G SQ + E L I+ Q + K+E ++ L +S + Sbjct: 1 MLLGEKLKSSRVKKGFSQNDVAEELHISRQSISKWENDISYPDLDNLVKLSTYYQVSTDH 60 Query: 73 FF 74 Sbjct: 61 LL 62 >gi|329962332|ref|ZP_08300337.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] gi|328530193|gb|EGF57074.1| DNA-binding helix-turn-helix protein [Bacteroides fluxus YIT 12057] Length = 191 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 39/89 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R +S E+L + G+ +Q+++ E ++ + L I+ VL + Sbjct: 5 KIVGEKIKSLRESQSISMEELAQRSGLAIEQIERIENNIDLPSLAPLIKIARVLGVRLGT 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 F D + + ++ + + + Sbjct: 65 FLDDQDEMGPVVCRKKEAQDSISFSNNAI 93 >gi|324325802|gb|ADY21062.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 403 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + ++ + ++ L Sbjct: 63 EEDEGKIVELIQKMEPLIKANGDEVYKTLL 92 >gi|323486595|ref|ZP_08091916.1| cro/CI family Transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323692262|ref|ZP_08106503.1| cro/CI family Transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323399976|gb|EGA92353.1| cro/CI family Transcriptional regulator [Clostridium symbiosum WAL-14163] gi|323503677|gb|EGB19498.1| cro/CI family Transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 106 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 17/116 (14%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+ R G+S + +G + K E G +I E L S FFD Sbjct: 8 GRRLSQLRERKGVSARDMSLSMGQNPGYINKVENGKAMPSMEVFFYICEFLAITPSDFFD 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 P L + + + I+ +V+ + + Sbjct: 68 EKKKE-----------------PWKLHQLTEECRYLSSESLEHILAIVKGLAEHNR 106 >gi|317496310|ref|ZP_07954668.1| hypothetical protein HMPREF0432_01272 [Gemella moribillum M424] gi|316913568|gb|EFV35056.1| hypothetical protein HMPREF0432_01272 [Gemella moribillum M424] Length = 64 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +I R GM+Q++L LG++ Q V E +S++ P+ Sbjct: 1 MSIPNKISFYRKKNGMTQDELASMLGVSRQFVSSIEGAKKIPSIKLAFQLSDIFGVPVDN 60 Query: 73 FF 74 F Sbjct: 61 LF 62 >gi|315122578|ref|YP_004063067.1| hypothetical protein CKC_04150 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495980|gb|ADR52579.1| hypothetical protein CKC_04150 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 174 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 27/66 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI+ R GM+ ++ G +G+++ + E G + I + + + Sbjct: 94 VEIGNRIKSIRKDKGMTLKEFGNLIGLSYAGLDNIENGHRKPRIETAIKIKYATQKSLDW 153 Query: 73 FFDVSP 78 + Sbjct: 154 IYFGDE 159 Score = 41.0 bits (94), Expect = 0.052, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G+S +++ + ++E+G+ + + + + + Sbjct: 14 VGIRIRDIRKNKGISTKEMAIVSETMRSAISQFERGICSTSINYALFLRNEFKVGFDWIY 73 Query: 75 DVS 77 D Sbjct: 74 DGE 76 >gi|299144678|ref|ZP_07037746.1| DNA-binding protein [Bacteroides sp. 3_1_23] gi|298515169|gb|EFI39050.1| DNA-binding protein [Bacteroides sp. 3_1_23] Length = 191 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R +S E+L + G+ +QV++ E ++ + L I+ VL + Sbjct: 5 KIVGEKIKALREDKSISIEELAQRSGLAIEQVERIENNIDIPSLAPLIKIARVLGVRLGT 64 Query: 73 FFDVSPT------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F D + + + I + ++ + D + II+++ Sbjct: 65 FLDDQDEVGPVVCRKKEAKDAISFSNNAIHSRKHMEYHSLSKSKADRHMEPFIIDVM 121 >gi|283479895|emb|CAY75811.1| putative HTH-type transcriptional regulatory protein Memar_2347 [Erwinia pyrifoliae DSM 12163] gi|283479904|emb|CAY75820.1| putative HTH-type transcriptional regulatory protein Memar_2347 [Erwinia pyrifoliae DSM 12163] Length = 142 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI R ++Q +L E LGI Q + YE G +V A+ L ++++L + Sbjct: 34 KQLGARIAQSRKEQQLTQTQLAEQLGIAQQTMAHYEGGKLKVSAALLPQLAQILNLSLDE 93 Query: 73 FFDVS 77 +S Sbjct: 94 LLGLS 98 >gi|222081941|ref|YP_002541306.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726620|gb|ACM29709.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 471 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 9/132 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV K I G ++R R LGM+Q + + L I+ + E+ + L Sbjct: 1 MVERK-------IFAGPKVRRVRNGLGMTQIAMADALEISPSYLNLIERNQRPLTVQLLL 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +S + + + S + + + P +L + ++ Sbjct: 54 KLSSAFKIDLDDLRSEAGNGLSQLKEVFADPLLAGELPGDQELVELADIAPNAAS--GMV 111 Query: 121 ELVRSIVSSEKK 132 +L R+ + Sbjct: 112 KLYRAYREQAAR 123 >gi|307155287|ref|YP_003890671.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306985515|gb|ADN17396.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 82 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 3/84 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +++ + +G +++ R LG+SQE+LG + + E+GV + L Sbjct: 1 MDESRRN---ILRALGSQVKRHRTKLGLSQEELGFRSNLDRTYISGVERGVRNPSFTALV 57 Query: 61 HISEVLESPISFFFDVSPTVCSDI 84 ++ L +S D +I Sbjct: 58 SLASGLGLTLSELLDNLEVEARNI 81 >gi|153813072|ref|ZP_01965740.1| hypothetical protein RUMOBE_03480 [Ruminococcus obeum ATCC 29174] gi|153814732|ref|ZP_01967400.1| hypothetical protein RUMTOR_00947 [Ruminococcus torques ATCC 27756] gi|154502995|ref|ZP_02040055.1| hypothetical protein RUMGNA_00817 [Ruminococcus gnavus ATCC 29149] gi|317501372|ref|ZP_07959574.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] gi|145847763|gb|EDK24681.1| hypothetical protein RUMTOR_00947 [Ruminococcus torques ATCC 27756] gi|149830874|gb|EDM85964.1| hypothetical protein RUMOBE_03480 [Ruminococcus obeum ATCC 29174] gi|153796349|gb|EDN78769.1| hypothetical protein RUMGNA_00817 [Ruminococcus gnavus ATCC 29149] gi|295107719|emb|CBL21672.1| Helix-turn-helix. [Ruminococcus obeum A2-162] gi|316897236|gb|EFV19305.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] Length = 209 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R + RR L ++Q + E +G+T +Q+YE G + +SE L + + Sbjct: 10 IGSRAKQRRTELNLTQPYIAEKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ + + T QL + +D + ++ +++ Sbjct: 70 RGETDEYETDITDKRELQIRDAMTDILKQLPLDLTKTEDAFSKDLLLLMLKQ 121 >gi|172062153|ref|YP_001809804.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994670|gb|ACB65588.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 203 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P I + + + ++ DG R + ID Sbjct: 86 S-QPKAAETIRVDGPHDIPTLAGHDGRYQLRVWGPID 121 >gi|56698227|ref|YP_168599.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56679964|gb|AAV96630.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 189 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 2/80 (2%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N + P+ +G +R R G++ ++ LG + + + E+ ++ S L+ I+ Sbjct: 2 NTQAPSS--ATLGADLRALRKARGLTLSEIAARLGRSVGWLSQVERDMSEPSISDLRQIA 59 Query: 64 EVLESPISFFFDVSPTVCSD 83 L P+S F + + Sbjct: 60 GCLGVPMSMLFAHAAAPAEE 79 >gi|42780878|ref|NP_978125.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42736799|gb|AAS40733.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 403 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLECEPSFLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + ++ + ++ L Sbjct: 63 EEDEGEVVELIQKMEPLIKANGDEVYKTLL 92 >gi|54308498|ref|YP_129518.1| hypothetical protein PBPRA1305 [Photobacterium profundum SS9] gi|46912927|emb|CAG19716.1| hypothetical helix-turn-helix XRE-family like proteins [Photobacterium profundum SS9] Length = 104 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 35/91 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +RIR+ R ++Q ++ + LG+ Q E G A L I+++L++ F Sbjct: 9 KALAQRIRVARECRELTQVRMAKYLGLARQTYLDIETGKTEPKAGTLLAIAQILKTDYRF 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + ++ F + L Sbjct: 69 LLTGEKYNGGIPLTVDDVNQYFARNCGDIHL 99 >gi|95931163|ref|ZP_01313886.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] gi|95132769|gb|EAT14445.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] Length = 215 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI+ R++L MSQ +L + L I+ QV E G L+ I + D Sbjct: 3 GQRIKEIRLLLEMSQAELADELCISKGQVSNVESGNKVPSEMLLELIIFKFGVNRDWLID 62 Query: 76 VSPTVCSDISSEEN 89 ++ + Sbjct: 63 GKGMPFEEVQPAKP 76 >gi|107027580|ref|YP_625091.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693708|ref|YP_839241.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|105896954|gb|ABF80118.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116651708|gb|ABK12348.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] Length = 180 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 30/79 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L + G+T + K E+G++ + +S+ L + F S Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLFSES 63 Query: 78 PTVCSDISSEENNVMDFIS 96 + + Sbjct: 64 RNRELITVTRAGERTAMGA 82 >gi|323703832|ref|ZP_08115468.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323531189|gb|EGB21092.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 70 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 30/69 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R G++Q KL E G++ + + E+G + ++ +++ L +S Sbjct: 2 KLQKYREDQGLTQAKLAEKSGVSQAYICELEQGKKQPSVFIVKKLAKALGISVSKLLGED 61 Query: 78 PTVCSDISS 86 + + Sbjct: 62 DDIPKASNE 70 >gi|307708163|ref|ZP_07644630.1| transcriptional regulator [Streptococcus mitis NCTC 12261] gi|307615609|gb|EFN94815.1| transcriptional regulator [Streptococcus mitis NCTC 12261] Length = 225 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 41/84 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ +R LG+ Q++L E +G++ Q K+EKG+++ + + +VL+ P + + Sbjct: 6 KLKQKREELGLEQQELAELIGVSKQAYFKWEKGLSKPTKVNIAKLEKVLKIPEGYLSEDE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGL 101 + +E N D L Sbjct: 66 ISSLYKQLTEPNQEKAITYVRDLL 89 >gi|291524263|emb|CBK89850.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 73 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 30/68 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ RR L ++Q+++G G++ Q + E+G + I++V + F + Sbjct: 5 NRLKERRAALNVNQQEMGRLCGVSRQTISLIERGDYSPSVTLALTIAKVCGVTVEDVFYL 64 Query: 77 SPTVCSDI 84 + Sbjct: 65 QEEDEDEE 72 >gi|281334739|gb|ADA61823.1| hypothetical protein SAP047A_004 [Staphylococcus aureus] Length = 113 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ +R + G SQE+L L ++ Q V K+E N L +S++ + Sbjct: 1 MKLAEAIKEQRELKGWSQEELANILKVSRQNVSKWESAKNYPSLDILIAMSDLFGISLEH 60 Query: 73 FFDVS 77 Sbjct: 61 LIKGD 65 >gi|171317225|ref|ZP_02906424.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171097600|gb|EDT42435.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 203 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P I + + + ++ DG R + ID Sbjct: 86 S-QPKAAETIRVDGPHDIPTLAGHDGRYQLRVWGPID 121 >gi|160883113|ref|ZP_02064116.1| hypothetical protein BACOVA_01081 [Bacteroides ovatus ATCC 8483] gi|237718837|ref|ZP_04549318.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|260173280|ref|ZP_05759692.1| transcriptional regulator [Bacteroides sp. D2] gi|293371883|ref|ZP_06618287.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|315921554|ref|ZP_07917794.1| transcriptional regulator [Bacteroides sp. D2] gi|156111585|gb|EDO13330.1| hypothetical protein BACOVA_01081 [Bacteroides ovatus ATCC 8483] gi|229451969|gb|EEO57760.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|292633129|gb|EFF51706.1| DNA-binding protein [Bacteroides ovatus SD CMC 3f] gi|295085499|emb|CBK67022.1| transcriptional regulator [Bacteroides xylanisolvens XB1A] gi|313695429|gb|EFS32264.1| transcriptional regulator [Bacteroides sp. D2] Length = 191 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R +S E+L + G+ +QV++ E ++ + L I+ VL + Sbjct: 5 KIVGEKIKALREDKSISIEELAQRSGLAIEQVERIENNIDIPSLAPLIKIARVLGVRLGT 64 Query: 73 FFDVSPT------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F D + + + I + ++ + D + II+++ Sbjct: 65 FLDDQDEVGPVVCRKKEAKDAISFSNNAIHSRKHMEYHSLSKSKADRHMEPFIIDVM 121 >gi|49481669|ref|YP_039048.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140498|ref|YP_086329.1| DNA-binding protein [Bacillus cereus E33L] gi|196040491|ref|ZP_03107791.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196047511|ref|ZP_03114721.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225867013|ref|YP_002752391.1| DNA-binding protein [Bacillus cereus 03BB102] gi|301056519|ref|YP_003794730.1| DNA-binding helix-turn helix protein [Bacillus anthracis CI] gi|49333225|gb|AAT63871.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973967|gb|AAU15517.1| DNA-binding protein [Bacillus cereus E33L] gi|196021625|gb|EDX60322.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196028623|gb|EDX67230.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|225787723|gb|ACO27940.1| DNA-binding protein [Bacillus cereus 03BB102] gi|300378688|gb|ADK07592.1| DNA-binding helix-turn helix protein [Bacillus cereus biovar anthracis str. CI] Length = 73 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 1 MKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEE 60 Query: 73 FFDVSPTVCSDIS 85 F + Sbjct: 61 IFTLVEGEDDGEE 73 >gi|68536003|ref|YP_250708.1| hypothetical protein jk0926 [Corynebacterium jeikeium K411] gi|68263602|emb|CAI37090.1| hypothetical protein jk0926 [Corynebacterium jeikeium K411] Length = 294 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 18/117 (15%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+R+R R+ G+SQ L E + + + ++E GV+ + ++ L +S Sbjct: 10 EFGRRLRHARLDRGLSQNALAEGI-CSASAISRWEAGVHLPPEDAIWSLANRLGIDVSVL 68 Query: 74 --------FDVSPTVCSDISSEENNVMDFIST---------PDGLQLNRYFIQIDDV 113 F SP +++ S LQL R + D Sbjct: 69 TGLGFDTRFAESPDRFAEVISAGVEDCSTFDDCSTAPRSPIAHWLQLARTLLNCVDP 125 >gi|115359716|ref|YP_776854.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285004|gb|ABI90520.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] Length = 203 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P I + + + ++ DG R + ID Sbjct: 86 S-QPKAAETIRVDGPHDIPTLAGHDGRYQLRVWGPID 121 >gi|327473020|gb|EGF18447.1| hypothetical transcriptional regulator [Streptococcus sanguinis SK408] Length = 227 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 49/122 (40%), Gaps = 26/122 (21%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ RR+ LG+ Q + E L ++ Q +EKG + L+ + +L+ P +F + Sbjct: 6 KLKNRRLKLGLRQVDIIEKLNVSKQAYSAWEKGKIKPSQDNLKKLETILKVPEGYFTE-- 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 L++ + +++ ++ I V ++ ++K Sbjct: 64 -----------------------LEIATLYKKLNKPNQQKAKI-YVEDLLETQKSKVQSI 99 Query: 138 EE 139 ++ Sbjct: 100 KK 101 >gi|326803106|ref|YP_004320924.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651536|gb|AEA01719.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 115 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 32/73 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I+ +R + +SQ +L L T Q V +E + L +S + + P+ Sbjct: 1 MKIGQIIKEQRELNNISQGQLASYLKTTQQTVSNWENNKSYPNVENLILLSSIFDQPMEE 60 Query: 73 FFDVSPTVCSDIS 85 + S+ + Sbjct: 61 LLNEDIRDISEAT 73 >gi|308068010|ref|YP_003869615.1| transcriptional regulator yazB [Paenibacillus polymyxa E681] gi|305857289|gb|ADM69077.1| Putative HTH-type transcriptional regulator yazB [Paenibacillus polymyxa E681] Length = 127 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 32/91 (35%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D + +RI GM+++ E L I+ + + +G G + L IS+ + Sbjct: 3 DQTIYQRIEALIKDRGMTKKAFCEKLKISSGNLGDWRRGKTTPGTTHLIQISDFFNVSLD 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + + ++ + P Q Sbjct: 63 WLMKGIKPGEGVLQEQKAAYFFGVMGPLNCQ 93 >gi|298717602|ref|YP_003730244.1| HTH-type transcriptional regulator [Pantoea vagans C9-1] gi|298361791|gb|ADI78572.1| Uncharacterized HTH-type transcriptional regulator ydcN [Pantoea vagans C9-1] Length = 200 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 35/102 (34%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V V RI+ R +S ++L G++ + + EKG + L I+ L + Sbjct: 18 VSQAVSDRIKSWRKSQKLSLDELSRRAGVSKGMLVEIEKGAANPSIAILCKIAAALGVSV 77 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + +S + + + + G + D Sbjct: 78 ADIVSISHAPDAWLIENSEMPVLWQGEQGGSAQLLAGTRGPD 119 >gi|291530756|emb|CBK96341.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 302 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++++ R G++QE+L + LG+T Q V K+E G L I+++ + I + Sbjct: 7 KQLQMLRKQSGITQEQLADKLGVTAQAVSKWENGSY-PDGDLLPKIADIFDVSIDNLYGR 65 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 CS N++ + Sbjct: 66 GEERCSFEQQVLNHMRAIADSNQ 88 >gi|289628554|ref|ZP_06461508.1| hypothetical protein PsyrpaN_26043 [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 111 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 14/118 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS-EVLESPISFF 73 VG R+R R LG+SQ + G +G++ + YE G ++ E + Sbjct: 7 VGVRLREERERLGLSQTEFGTLVGVSRGTQKNYELGTALGALDLKYLMALEANGIDAGYV 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 I+SEE+ Q+ + I D R + ++++ + Sbjct: 67 LTAQRRYGRGITSEES------------QILAQYRSITDGDQR-ALRRFLKAMADDAE 111 >gi|261406993|ref|YP_003243234.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283456|gb|ACX65427.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 186 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 45/116 (38%), Gaps = 8/116 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + +G ++ R MS + L E G++ + E+G + + Sbjct: 1 MDEVNESKQIVLQMGGALKKYRKEKNMSLDDLAEITGVSKLTLGNIERGETNPTLAIIWK 60 Query: 62 ISEVLESPISFFFDVS--------PTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 IS+ + P+ F + E+N +++ + + +++ R ++Q Sbjct: 61 ISKGISLPLFALFKSENPVSLYRAGEGLRFSNDEKNWIIEPVFKSNDMEMCRAYLQ 116 >gi|261208044|ref|ZP_05922719.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289565525|ref|ZP_06445973.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|260077628|gb|EEW65344.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289162723|gb|EFD10575.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] Length = 87 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R G+SQ +L + + +T Q V ++ G +++ +SE+L P++ F Sbjct: 21 SNLSRYRKEKGLSQTELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPMNELFSD 80 >gi|237800459|ref|ZP_04588920.1| DNA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023318|gb|EGI03375.1| DNA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 120 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 27/130 (20%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R LG+SQ GE G+ KYE G A L ++ + + Sbjct: 4 IGYRLRKERERLGLSQRSFGEIGGVEANAQGKYENGDRAPKADYLAAVAAK-GVDVLYVL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + T + +KI+ R + ++ Sbjct: 63 TGTHTPVPIDNLSVIE--------------------------EKILGNYRVLEKEDQDAI 96 Query: 135 TIEEECMVEQ 144 + E Sbjct: 97 RRLTTTIAEH 106 >gi|229173521|ref|ZP_04301064.1| transcriptional regulator/TPR domain protein [Bacillus cereus MM3] gi|228609903|gb|EEK67182.1| transcriptional regulator/TPR domain protein [Bacillus cereus MM3] Length = 440 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 17/144 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR RM G++Q +L + + + + E G + +S ++ +S+ LE + Sbjct: 18 MEIGERIRHVRMHKGLTQGELVSGI-CSITYLSRIESGKIKPSSSFIKKVSKKLEVKSDY 76 Query: 73 FFDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDV--------------KVR 116 + + + D T L L +++ D VR Sbjct: 77 LINGNYEAIKLTIFKICNKYKTDKSITEADLSLLELYVREVDSIPLLLKVYGVLIYYHVR 136 Query: 117 QKIIELVRSIVSSEKKYRTIEEEC 140 QK + V+S++ + + E Sbjct: 137 QKKVLYVKSLIDQASQMIPSQVEL 160 >gi|225022262|ref|ZP_03711454.1| hypothetical protein CORMATOL_02297 [Corynebacterium matruchotii ATCC 33806] gi|224944985|gb|EEG26194.1| hypothetical protein CORMATOL_02297 [Corynebacterium matruchotii ATCC 33806] Length = 70 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R G+SQE+ + LG+ + E+G + ++H++E + + Sbjct: 10 VGAYLRSYRKERGLSQERFADVLGVHRTYMGSVERGERNLTLQTVEHLAEQIGVEVREML 69 >gi|218898949|ref|YP_002447360.1| immunity repressor protein [Bacillus cereus G9842] gi|218543383|gb|ACK95777.1| immunity repressor protein [Bacillus cereus G9842] Length = 144 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 36/98 (36%), Gaps = 2/98 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++Q+ L + + T + YE G + L+ ++ VL + Sbjct: 4 QRLKEMRKTRKLTQQGLADKVNTTKGTISNYENGHSTPSNEMLKDLANVLGVTTDYLLGR 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + N D + L + +++ + Sbjct: 64 EDESRVSNTLPDLNKKD--TRDIARDLEKTLKDLENSE 99 >gi|217975377|ref|YP_002360128.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|217500512|gb|ACK48705.1| transcriptional regulator, XRE family [Shewanella baltica OS223] Length = 510 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A L I+ V Sbjct: 13 FLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAGMLAVIAAVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + +F D P + Sbjct: 73 QKDADWFLDDVPEESAITPD 92 >gi|24372846|ref|NP_716888.1| transcriptional regulator, putative [Shewanella oneidensis MR-1] gi|24346951|gb|AAN54333.1|AE015570_7 transcriptional regulator, putative [Shewanella oneidensis MR-1] Length = 182 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +R R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDIGASLRTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVD 60 Query: 73 FFDVSPTVC 81 FF + + Sbjct: 61 FFSIEASSE 69 >gi|167038622|ref|YP_001666200.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320117013|ref|YP_004187172.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857456|gb|ABY95864.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930104|gb|ADV80789.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 74 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + R ++QE+L + LGI+ + YE G SR + I++ P+ F Sbjct: 4 LAELRKSRRLTQEQLSKLLGISKSSIAMYETGQRVPSLSRAKKIAKFFNVPVEKIFFGD 62 >gi|328955940|ref|YP_004373273.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328456264|gb|AEB07458.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 218 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 41/106 (38%), Gaps = 3/106 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +R+ R G SQE+L + LG++ Q + K+E+ + L ++ + + Sbjct: 1 MNVQTAQRLAELRRTKGYSQEELAQRLGLSRQAISKWERAESSPDTDNLIALARLYSVSL 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + + + R Q+ + R Sbjct: 61 D---ELVGAPFGGTAEDLVEEAAAATRETTRERARDEEQLRVERER 103 >gi|329910926|ref|ZP_08275406.1| hypothetical protein IMCC9480_333 [Oxalobacteraceae bacterium IMCC9480] gi|327546048|gb|EGF31123.1| hypothetical protein IMCC9480_333 [Oxalobacteraceae bacterium IMCC9480] Length = 191 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 26/77 (33%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG ++ R+ ++ E L G++ + + E+ + ++ L I+ Sbjct: 12 EVGATLQRMRLERDLTLEDLSRAAGVSKSMLSQIEREKANPTIAVAWRLANALGVSIAEL 71 Query: 74 FDVSPTVCSDISSEENN 90 I E + Sbjct: 72 LSTEARPLEAIRVMEPH 88 >gi|327398988|ref|YP_004339857.1| helix-turn-helix domain-containing protein [Hippea maritima DSM 10411] gi|327181617|gb|AEA33798.1| helix-turn-helix domain protein [Hippea maritima DSM 10411] Length = 72 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEV 65 + N +GK+I+ R LG+SQ++L + + + K E G + + + I++ Sbjct: 1 MENNQGNKLGKKIKKLRTGLGLSQDELARKADVPYTTLTKIETGVIKKPSVYVVAKIAKA 60 Query: 66 LESPISFFFD 75 L I + Sbjct: 61 LNITIEELIN 70 >gi|326802770|ref|YP_004320588.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651230|gb|AEA01413.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 194 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R++ R G++ E + E +G + V +YE+G + V L ++E+ + Sbjct: 4 LANRLKSAREAAGLTIEAVSEKIGKSVSTVWRYEQGKSEVNQESLTKLAELYGVSELYLR 63 Query: 75 DVSPTVCSDISS 86 S +D+ Sbjct: 64 GFSDMKSADVIE 75 >gi|309779373|ref|ZP_07674135.1| DNA binding protein [Ralstonia sp. 5_7_47FAA] gi|308921931|gb|EFP67566.1| DNA binding protein [Ralstonia sp. 5_7_47FAA] Length = 198 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 29/72 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +++ R +S ++L G++ + + E+ + + L ++ L ++ F Sbjct: 16 AVGAKLQTLRQARKLSLDELSRRAGVSKSMLSQVERNLANPTVAVLWRLATALGVGLADF 75 Query: 74 FDVSPTVCSDIS 85 + + Sbjct: 76 LSPEGAADAAPA 87 >gi|308175926|ref|YP_003915332.1| transcriptional regulator [Arthrobacter arilaitensis Re117] gi|307743389|emb|CBT74361.1| putative transcriptional regulator [Arthrobacter arilaitensis Re117] Length = 65 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G SQ+ L + LG++ Q + EKG +S V I F Sbjct: 3 NNLSEYRKEHGFSQQALADLLGVSRQTIISLEKGRYDPSLPLAFKLSAVFGCKIEDLF 60 >gi|307286682|ref|ZP_07566768.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306502160|gb|EFM71444.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315165266|gb|EFU09283.1| helix-turn-helix protein [Enterococcus faecalis TX1302] Length = 232 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 6 KQVGARMRDARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + ++ + ++ Sbjct: 66 WLLYGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMGRLSEEQL 107 >gi|298292090|ref|YP_003694029.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296928601|gb|ADH89410.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 206 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 32/91 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R +S +L E G+ + + E+ + + +S+ L+ I F Sbjct: 23 QLGRTIQRLRKAYNLSLSELSEQSGVAKSIISQIERNETNPTLATVWRLSQALDVSIDRF 82 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + +S +L Sbjct: 83 MAATDDEPFVEHLTRADTPILLSEDGKCRLT 113 >gi|291545572|emb|CBL18680.1| Helix-turn-helix [Ruminococcus sp. SR1/5] Length = 97 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 40/94 (42%), Gaps = 1/94 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+RI+ R ++QE+L + ++ V E+G+ I+ L+ Sbjct: 4 KAVGQRIKSAREAKNLTQEELAALVNLSPTHVSVIERGLKVTKLDTFVAIANALDVSADT 63 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 DV + +++E ++ + + +L++ Sbjct: 64 LLIDVVAHSVTGVTNELTEKIEKLPIKEQKKLSK 97 >gi|253730501|ref|ZP_04864666.1| transcription regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725750|gb|EES94479.1| transcription regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 391 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE S++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|229101980|ref|ZP_04232694.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-28] gi|228681563|gb|EEL35726.1| HTH-type transcriptional regulator sinR [Bacillus cereus Rock3-28] Length = 107 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R+ G+S +L E G+ + E+ L+ I+ VL+ P+ Sbjct: 1 MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDT 60 Query: 73 FFDVSPTVCSDISSE 87 + + SE Sbjct: 61 LLHDETEKEARLDSE 75 >gi|261346297|ref|ZP_05973941.1| DNA-binding protein [Providencia rustigianii DSM 4541] gi|282565609|gb|EFB71144.1| DNA-binding protein [Providencia rustigianii DSM 4541] Length = 113 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 37/87 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ +R R + G S K+ + LG++ Q +YE G R+ L +L+ S FF+ Sbjct: 20 GRELRRIRKMKGFSGAKIAKQLGVSQQHYSRYECGKCRISIDTLLISLAILDFDFSDFFN 79 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 + + E + T ++ Sbjct: 80 EMKFIIKNDKREYPIDIKLNDTHKDIE 106 >gi|260880930|ref|ZP_05403166.2| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] gi|260849947|gb|EEX69954.1| toxin-antitoxin system, antitoxin component, Xre family [Mitsuokella multacida DSM 20544] Length = 164 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 31/63 (49%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ R++ R GM ++++ E LGIT Q YE G S L +S++ + P+ Sbjct: 8 MDMVFANRLKEVRERSGMKRKEVAEKLGITMQAYTCYEYGRREPRLSNLIKLSKIFDIPV 67 Query: 71 SFF 73 Sbjct: 68 DVL 70 >gi|206559412|ref|YP_002230173.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|206561186|ref|YP_002231951.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198035450|emb|CAR51327.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198037228|emb|CAR53149.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 206 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 4/100 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R+R R + G + + L G++ + E+ A L ++ L + Sbjct: 14 INERIARRVRGLRAVRGYTLDTLAARSGVSRSMISLIERASASPTAVVLDKLAAGLGVSL 73 Query: 71 SFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + F D +P +++ D S L+ Sbjct: 74 AGLFGGDRDDAPAQPLARRAQQAEWRDPASGYVRRNLSPA 113 >gi|196037572|ref|ZP_03104883.1| conserved domain protein [Bacillus cereus NVH0597-99] gi|218235301|ref|YP_002365690.1| hypothetical protein BCB4264_A0957 [Bacillus cereus B4264] gi|296501634|ref|YP_003663334.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|296506639|ref|YP_003667873.1| transcriptional regulator [Bacillus thuringiensis BMB171] gi|196031814|gb|EDX70410.1| conserved domain protein [Bacillus cereus NVH0597-99] gi|218163258|gb|ACK63250.1| conserved domain protein [Bacillus cereus B4264] gi|296322686|gb|ADH05614.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|296327226|gb|ADH10153.1| Transcriptional regulator [Bacillus thuringiensis BMB171] Length = 65 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R G++Q++L + +T Q + E I++ L+ + F Sbjct: 4 SKIKIARTEKGLTQQELAVLVNVTRQTIGLIELNKYNPSLKLCIDIAKSLDKTLDELFWE 63 Query: 77 SP 78 Sbjct: 64 EK 65 >gi|134096404|ref|YP_001101479.1| hypothetical protein HEAR3251 [Herminiimonas arsenicoxydans] gi|133740307|emb|CAL63358.1| Conserved hypothetical protein; putative cupin domain [Herminiimonas arsenicoxydans] Length = 198 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 KK P ++G R+R R++ G++ +L + + + K E+G + L ++ Sbjct: 15 EKKSPTA---SLGLRLRHARLVAGLTLLQLAQKAACSESLISKIERGSATPSLAMLHRLA 71 Query: 64 EVLESPISFFFDVSPTVCSDISS 86 LE+ IS I Sbjct: 72 MALETNISSLMSEDGPATGPILR 94 >gi|148554493|ref|YP_001262075.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148499683|gb|ABQ67937.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1] Length = 57 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 20/57 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R R G SQE + GI + E+G ++ ++ P D Sbjct: 1 MRRLREEKGWSQEAYADEAGIHRTYISDIERGARNPTVKVVEKLAAPFGVPAGQLID 57 >gi|319794332|ref|YP_004155972.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315596795|gb|ADU37861.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 199 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 35/99 (35%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P +D + R+ R G+S +L E G++ + K E+ + A L ++ L Sbjct: 11 APGHLDALIATRLLALRQAKGLSLAELAELSGVSKAMISKVERAQSSPTAVLLGRLAAGL 70 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 ++ + + + P+ L R Sbjct: 71 GVSLAQLLTEEKEKEAPQRLRTKAMQEVWRDPEAGYLRR 109 >gi|257090579|ref|ZP_05584940.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|294619908|ref|ZP_06699284.1| transcriptional regulator, xre family [Enterococcus faecium E1679] gi|312905109|ref|ZP_07764230.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|256999391|gb|EEU85911.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|291593845|gb|EFF25343.1| transcriptional regulator, xre family [Enterococcus faecium E1679] gi|310631499|gb|EFQ14782.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315163419|gb|EFU07436.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315579063|gb|EFU91254.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 111 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 4/104 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR +R LG +Q++L E + T Q V ++E V L +S L +P+S F D Sbjct: 10 IREKRKALGWTQKELAEKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD--- 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIE 121 V D E + +ST D ++ Y + R ++++ Sbjct: 67 NVVVDYEEEFLALYRSLSTEDAVRTIDYMKLLKRQENERNQLLK 110 >gi|256855125|ref|ZP_05560486.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|300861901|ref|ZP_07107981.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|256709638|gb|EEU24685.1| conserved hypothetical protein [Enterococcus faecalis T8] gi|300848426|gb|EFK76183.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|315028790|gb|EFT40722.1| helix-turn-helix protein [Enterococcus faecalis TX4000] Length = 117 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 1/105 (0%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D VG I+ R+ G+++E++G + I + + E L + Sbjct: 2 RKKEDKYDFRAVGLAIKEARIKRGLTREQVGTIIEIDPRYLTNIENKGQHPSTQVLYDLV 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 +L I FF + + + T L L Sbjct: 62 SLLHVSIDEFFLPTDNLIKSTRRLQIEKYMDNFTDQELSLMEALA 106 >gi|225575462|ref|ZP_03784072.1| hypothetical protein RUMHYD_03552 [Blautia hydrogenotrophica DSM 10507] gi|225037314|gb|EEG47560.1| hypothetical protein RUMHYD_03552 [Blautia hydrogenotrophica DSM 10507] Length = 145 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I R G+SQ++L E + +T Q V ++E G L+ +S++ + I+ Sbjct: 7 ISELRKEYGLSQDELAEKVYVTRQAVSRWETGETIPNIETLKLLSKLFDVSINTLL 62 >gi|224538886|ref|ZP_03679425.1| hypothetical protein BACCELL_03782 [Bacteroides cellulosilyticus DSM 14838] gi|224519493|gb|EEF88598.1| hypothetical protein BACCELL_03782 [Bacteroides cellulosilyticus DSM 14838] Length = 81 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ R G+SQE+L + + E+ + +++ L P+ Sbjct: 13 LALGKRIKFFREEKGVSQEQLAAICNVHRTYIGMLERAERNATIISIIKVAKGLNIPLVK 72 Query: 73 FFDVSPTV 80 + Sbjct: 73 LLENLENE 80 >gi|221316990|ref|YP_002533134.1| transcriptional regulator [Bacillus cereus Q1] gi|221243322|gb|ACM16030.1| transcriptional regulator [Bacillus cereus Q1] Length = 108 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 30/90 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R + QE + + L + +E G + L IS+ I Sbjct: 4 LGERLLYFRKNRKLRQEDIADHLNVARATYTNWEAGRAEPDIATLIKISDFYTISIDNLV 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + ++ + D LN Sbjct: 64 GRTYRIEPQFEVIKDQIKDLQPEKQKRALN 93 >gi|295835540|ref|ZP_06822473.1| DNA-binding protein [Streptomyces sp. SPB74] gi|197699432|gb|EDY46365.1| DNA-binding protein [Streptomyces sp. SPB74] Length = 204 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 24/68 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E + ++ + + E G + L ++ + +S +P Sbjct: 20 LRELRRRAGLTLEAAAKAASLSPAHLSRLETGRRQPSLPMLLALARTYGTTVSELLGETP 79 Query: 79 TVCSDISS 86 + Sbjct: 80 AGPGAVVR 87 >gi|160878668|ref|YP_001557636.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427334|gb|ABX40897.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 114 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++Q +L E LG+ V YE N +L +S + + +S Sbjct: 6 RLKQLRQKHKLTQSELAEILGLKPTAVSNYESRRNEPSFEKLIALSRYFDVSCDYLLGIS 65 Query: 78 PT 79 Sbjct: 66 DA 67 >gi|77462199|ref|YP_351703.1| hypothetical protein RSP_6209 [Rhodobacter sphaeroides 2.4.1] gi|77386617|gb|ABA77802.1| hypothetical protein RSP_6209 [Rhodobacter sphaeroides 2.4.1] Length = 120 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 21/114 (18%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R G +QE L G++ Q+ E+ RL I+ L F+ + Sbjct: 27 RIKQLREARGWTQEVLAARSGMSRSQLAMIERETRPANTIRLNAIAGALGVSTEDLFESN 86 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 P L+L R + + + +I + + + + Sbjct: 87 PRE-----------------RALLELIR----LLPSEDVEALIRVAEGLAAKSQ 119 >gi|17988333|ref|NP_540967.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|62290921|ref|YP_222714.1| hypothetical protein BruAb1_2052 [Brucella abortus bv. 1 str. 9-941] gi|82700832|ref|YP_415406.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella melitensis biovar Abortus 2308] gi|189025134|ref|YP_001935902.1| Helix-turn-helix motif [Brucella abortus S19] gi|225853508|ref|YP_002733741.1| XRE family transcriptional regulator [Brucella melitensis ATCC 23457] gi|237816428|ref|ZP_04595421.1| transcriptional regulator [Brucella abortus str. 2308 A] gi|254690210|ref|ZP_05153464.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 6 str. 870] gi|254694700|ref|ZP_05156528.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 3 str. Tulya] gi|254696327|ref|ZP_05158155.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254731243|ref|ZP_05189821.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 4 str. 292] gi|256045681|ref|ZP_05448559.1| transcriptional regulator, XRE family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256112402|ref|ZP_05453323.1| transcriptional regulator, XRE family protein [Brucella melitensis bv. 3 str. Ether] gi|256258465|ref|ZP_05464001.1| transcriptional regulator, XRE family protein [Brucella abortus bv. 9 str. C68] gi|256263010|ref|ZP_05465542.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|260546183|ref|ZP_05821923.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260562982|ref|ZP_05833468.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260755750|ref|ZP_05868098.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260758974|ref|ZP_05871322.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260760698|ref|ZP_05873041.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260884776|ref|ZP_05896390.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261215027|ref|ZP_05929308.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|265992102|ref|ZP_06104659.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265993839|ref|ZP_06106396.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|297247305|ref|ZP_06931023.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|17984108|gb|AAL53231.1| transcriptional regulator [Brucella melitensis bv. 1 str. 16M] gi|62197053|gb|AAX75353.1| conserved hypothetical protein [Brucella abortus bv. 1 str. 9-941] gi|82616933|emb|CAJ12034.1| Helix-turn-helix motif [Brucella melitensis biovar Abortus 2308] gi|189020706|gb|ACD73428.1| Helix-turn-helix motif [Brucella abortus S19] gi|225641873|gb|ACO01787.1| transcriptional regulator, XRE family protein [Brucella melitensis ATCC 23457] gi|237788495|gb|EEP62710.1| transcriptional regulator [Brucella abortus str. 2308 A] gi|260096290|gb|EEW80166.1| helix-turn-helix domain-containing protein [Brucella abortus NCTC 8038] gi|260152998|gb|EEW88090.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 1 str. 16M] gi|260669292|gb|EEX56232.1| transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671130|gb|EEX57951.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260675858|gb|EEX62679.1| transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260874304|gb|EEX81373.1| transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260916634|gb|EEX83495.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|262764820|gb|EEZ10741.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263003168|gb|EEZ15461.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263092883|gb|EEZ17058.1| helix-turn-helix domain-containing protein [Brucella melitensis bv. 2 str. 63/9] gi|297174474|gb|EFH33821.1| helix-hairpin-helix DNA-binding domain-containing protein [Brucella abortus bv. 5 str. B3196] gi|326410075|gb|ADZ67140.1| Helix-turn-helix motif protein [Brucella melitensis M28] Length = 126 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 3/120 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 GKR+R R G++Q+++ + L ++ + E G + LQ I Sbjct: 5 GKRLRELREERGVTQKEMAQALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIWDE-- 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + +S + +P QL + R I L I ++ K+ R Sbjct: 63 AEELQNLAAVSHPRVVIDTSGLSPQATQLANLLAKNIRFIDRDTIKHLTEEIAAARKRRR 122 >gi|167740855|ref|ZP_02413629.1| DNA-binding protein [Burkholderia pseudomallei 14] gi|167826439|ref|ZP_02457910.1| DNA-binding protein [Burkholderia pseudomallei 9] gi|167913192|ref|ZP_02500283.1| DNA-binding protein [Burkholderia pseudomallei 112] gi|167921137|ref|ZP_02508228.1| DNA-binding protein [Burkholderia pseudomallei BCC215] gi|217423144|ref|ZP_03454646.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|226193468|ref|ZP_03789073.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] gi|254192687|ref|ZP_04899123.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei S13] gi|169649442|gb|EDS82135.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei S13] gi|217394052|gb|EEC34072.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 576] gi|225934350|gb|EEH30332.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pakistan 9] Length = 202 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 30/89 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 25 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 + +++ QL Sbjct: 85 AQPKAPETIRVDGPHDIPTLAGHDAQYQL 113 >gi|76818409|ref|YP_336666.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b] gi|126445514|ref|YP_001061010.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126456620|ref|YP_001074047.1| DNA-binding cupin domain-containing protein [Burkholderia pseudomallei 1106a] gi|167721896|ref|ZP_02405132.1| DNA-binding protein [Burkholderia pseudomallei DM98] gi|167847952|ref|ZP_02473460.1| DNA-binding protein [Burkholderia pseudomallei B7210] gi|237508050|ref|ZP_04520765.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei MSHR346] gi|242312736|ref|ZP_04811753.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] gi|254185569|ref|ZP_04892156.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|254192180|ref|ZP_04898678.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pasteur 52237] gi|254264681|ref|ZP_04955546.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] gi|76582882|gb|ABA52356.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b] gi|126225005|gb|ABN88510.1| DNA-binding protein [Burkholderia pseudomallei 668] gi|126230388|gb|ABN93801.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106a] gi|157987660|gb|EDO95427.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei Pasteur 52237] gi|184209803|gb|EDU06846.1| DNA-binding protein [Burkholderia pseudomallei 1655] gi|235000255|gb|EEP49679.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei MSHR346] gi|242135975|gb|EES22378.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1106b] gi|254215683|gb|EET05068.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 1710a] Length = 202 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 30/89 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 25 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 + +++ QL Sbjct: 85 AQPKAPETIRVDGPHDIPTLAGHDAQYQL 113 >gi|309774559|ref|ZP_07669585.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917674|gb|EFP63388.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] Length = 400 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 37/94 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I R G +Q +L E L ++ + V ++E + L+ +SE L Sbjct: 8 EKIIRLRKKKGYTQAQLAELLNVSNKAVSRWETAEGYPDITLLKPLSEALGVSCDELLGD 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 S + + + + T L L F+++ Sbjct: 68 SESYSDLSRYDLQRYLPYALTLLALLLYYIFLKL 101 >gi|304412024|ref|ZP_07393634.1| helix-turn-helix domain protein [Shewanella baltica OS183] gi|304349574|gb|EFM13982.1| helix-turn-helix domain protein [Shewanella baltica OS183] Length = 510 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A L I+ V Sbjct: 13 FLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAGMLAVIAAVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + +F D P + Sbjct: 73 QKDADWFLDDVPEESAITPD 92 >gi|291539157|emb|CBL12268.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 184 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF- 72 +GK I+ +R ++Q++ + LG + + +QKYE G + L+ I+ L P Sbjct: 6 EIGKAIQKQRRAQKITQKEFAQRLGKSERTIQKYESGEILLKIDVLKQIANELNVPWQEL 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 F D ++ E +F + D + ++ D Sbjct: 66 LFAKDTNTPKDNTTAEYPSYEFHTMSDVINALFAITELTD 105 >gi|262404912|ref|ZP_06081465.1| putative transcriptional regulator [Vibrio sp. RC586] gi|262348878|gb|EEY98018.1| putative transcriptional regulator [Vibrio sp. RC586] Length = 107 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ+ LG +G+ + +YEKG + L+ I++ L+ P+S+F Sbjct: 10 RLKEARKKAKLSQKALGVRIGMDESSASPRMNQYEKGKHTPDVRTLKLIADELDVPLSYF 69 Query: 74 FDVSPTVCS 82 F + Sbjct: 70 FSEDEITAN 78 >gi|237717327|ref|ZP_04547808.1| transcriptional regulator [Bacteroides sp. D1] gi|262406092|ref|ZP_06082642.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|294648160|ref|ZP_06725703.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|229443310|gb|EEO49101.1| transcriptional regulator [Bacteroides sp. D1] gi|262356967|gb|EEZ06057.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|292636544|gb|EFF55019.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] Length = 191 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R +S E+L + G+ +Q+++ E ++ + L I+ VL + Sbjct: 5 KIVGEKIKALREDKSISIEELAQRSGLAIEQIERIENNIDIPSLAPLIKIARVLGVRLGT 64 Query: 73 FFDVSPT------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F D + + + I + ++ + D + II+++ Sbjct: 65 FLDDQDEVGPVVCRKKEAKDAISFSNNAIHSRKHMEYHSLSKSKADRHMEPFIIDVM 121 >gi|228911093|ref|ZP_04074900.1| Transcription regulator, probable-related protein [Bacillus thuringiensis IBL 200] gi|228848597|gb|EEM93444.1| Transcription regulator, probable-related protein [Bacillus thuringiensis IBL 200] Length = 68 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 7 NNVKKYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSLFWE 66 Query: 77 SP 78 Sbjct: 67 GD 68 >gi|224823653|ref|ZP_03696762.1| putative phage repressor [Lutiella nitroferrum 2002] gi|224604108|gb|EEG10282.1| putative phage repressor [Lutiella nitroferrum 2002] Length = 324 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 36/90 (40%), Gaps = 1/90 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR+ R + G++Q +L + +G++ Q + E G N+ G L I++ L ++ Sbjct: 97 LGKRVTHARELKGLTQLELAKRVGVSAQTINFVENGRNK-GTKHLLAIAKALGVSATWLD 155 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ D + Sbjct: 156 SGKGSMTEVSLRPIEVWEDEEQLAQSGEYI 185 >gi|222085057|ref|YP_002543586.1| hypothetical protein Arad_1139 [Agrobacterium radiobacter K84] gi|221722505|gb|ACM25661.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 207 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + G+ +R R G S ++L + G++ + + E G + S L I+ L+ Sbjct: 19 DEISSLTGQNLRRLRTRRGYSLDRLAKISGVSRAMLGQVETGKSSPTISILWKIAAALDV 78 Query: 69 PISFF 73 P Sbjct: 79 PCGSL 83 >gi|229815595|ref|ZP_04445922.1| hypothetical protein COLINT_02647 [Collinsella intestinalis DSM 13280] gi|229808825|gb|EEP44600.1| hypothetical protein COLINT_02647 [Collinsella intestinalis DSM 13280] Length = 312 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + R M+QE L LG+T Q V K+E G + +L + E+ E + Sbjct: 6 NLLYLRDSRNMTQEHLAMLLGVTRQAVSKWEAGASTPDMDKLVRLCEIFEVDLDELIRGD 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQ 102 TV + + +S G Sbjct: 66 VTVRTVNQTLAIPDDAPVSDVTGYD 90 >gi|162457184|ref|YP_001619551.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] gi|161167766|emb|CAN99071.1| DNA-binding protein [Sorangium cellulosum 'So ce 56'] Length = 79 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Query: 19 IRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 IR R G M+Q +L E +G+T Q + E+G I+ P+ F Sbjct: 12 IRTLRFHAGEMTQAELAEKVGVTRQTIVAIEQGRYSPSLEVAFRIAAAFGVPLEHVFQWK 71 Query: 78 PTVCSD 83 V + Sbjct: 72 GDVSGE 77 >gi|21914458|gb|AAM81423.1|AF527608_45 C2 protein [Salmonella phage P22-pbi] Length = 216 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +S+ L+ + Sbjct: 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGEDLLALSKALQCSPDYLLK 66 Query: 76 VSPTVCSDISSEENNV 91 + + + Sbjct: 67 GDLSQTNVAYHSRHEP 82 >gi|317487075|ref|ZP_07945882.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316921647|gb|EFV42926.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 116 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 41/96 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I RR + G +Q + E +G+ + + E+G RL+ ++ +LE + F Sbjct: 13 VGANITARRKLKGWTQAEFAEKMGMGPDSLSRIERGTVAPRFPRLEEMARLLECSPADLF 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + +IS + + I ++ R +I Sbjct: 73 RSPDEILQEISGKTQIKVQAIPLAPKEEVIRLAEKI 108 >gi|300857312|ref|YP_003782296.1| putative membrane-associated gene regulator [Clostridium ljungdahlii DSM 13528] gi|300437427|gb|ADK17194.1| putative membrane-associated gene regulator with a HTH motif [Clostridium ljungdahlii DSM 13528] Length = 344 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK I +R ++Q++L E L ++ V K+E+G++ S + I + L+ Sbjct: 8 GKFIIKKRKENNLTQKELAEKLYVSESAVSKWERGISYPDISLILSICDALKISEHELIT 67 Query: 76 VSPT 79 S Sbjct: 68 ASED 71 >gi|297158987|gb|ADI08699.1| hypothetical protein SBI_05579 [Streptomyces bingchenggensis BCW-1] Length = 440 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 21/127 (16%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 + RR +LG SQE L + LG+ V ++E G + ++E+L+ ++ + Sbjct: 24 LAERRKVLGYSQETLAQALGVDRTTVGRWECGKSEPQPPLRPKLAEILQVDLADLDSLLG 83 Query: 79 -------TVCSDISSEENNVMDFISTPDGLQLNRYFI--------------QIDDVKVRQ 117 S +++ + R ++ + R Sbjct: 84 RSHALPQEAAGSSPSSDDHTPGVTEDMIRREFLRAITVTGALAALPGDEVEELSERAHRG 143 Query: 118 KIIELVR 124 + + +R Sbjct: 144 AVADFLR 150 >gi|255021528|ref|ZP_05293572.1| Transcriptional regulator, MerR family [Acidithiobacillus caldus ATCC 51756] gi|254969056|gb|EET26574.1| Transcriptional regulator, MerR family [Acidithiobacillus caldus ATCC 51756] Length = 181 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 3/98 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++++ R +S LGE G++ + + E G + L+ I L I+ Sbjct: 3 QLGRQLQKLREERQLSLRSLGELAGVSASAISQMEAGKVSPSIATLEKICNALGVHIASL 62 Query: 74 FDVSPTVCSDIS---SEENNVMDFISTPDGLQLNRYFI 108 FD I +E V S L R F Sbjct: 63 FDEPQGDQGPILLRTNERRRVYSADSHASIEPLARNFA 100 >gi|239983013|ref|ZP_04705537.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] gi|291454845|ref|ZP_06594235.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] gi|291357794|gb|EFE84696.1| UDP-N-acetylglucosamine transferase [Streptomyces albus J1074] Length = 509 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MADDYLVRIGKLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|229099483|ref|ZP_04230412.1| hypothetical protein bcere0020_47010 [Bacillus cereus Rock3-29] gi|228683979|gb|EEL37928.1| hypothetical protein bcere0020_47010 [Bacillus cereus Rock3-29] Length = 79 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAKIFNVPVE 65 Query: 72 FFFDV 76 F + Sbjct: 66 EIFTL 70 >gi|288549632|ref|ZP_05967658.2| DNA-binding protein [Enterobacter cancerogenus ATCC 35316] gi|288318084|gb|EFC57022.1| DNA-binding protein [Enterobacter cancerogenus ATCC 35316] Length = 183 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 32/90 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ ++ R G S L E G++ + + E+ + S L I+ L P S F Sbjct: 14 HLASTLKALRQARGWSLSMLAEKTGVSKAMLGQIERNESSPTVSTLWKIATGLNVPFSAF 73 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + ++ ++ P L Sbjct: 74 ITPEAESPAVYDPQQQAMVVKPLFPWDEAL 103 >gi|170696008|ref|ZP_02887146.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia graminis C4D1M] gi|170139088|gb|EDT07278.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia graminis C4D1M] Length = 330 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 3/124 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ I Sbjct: 32 GEREERDPFLTAMGERVRLLRARRGMTRKTLAAETGLSERHLANLESGVGNASVLVLRQI 91 Query: 63 SEVLESPISFFFDVSPTVCSD---ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + L P++ T ++ I + + L F Q R+ Sbjct: 92 AATLNCPLAEVIGDETTASAEWLLIRELLHGRDQAALQRARIALAEMFAQAPRDPHRKDR 151 Query: 120 IELV 123 I L+ Sbjct: 152 IALI 155 >gi|219849656|ref|YP_002464089.1| helix-turn-helix domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219543915|gb|ACL25653.1| helix-turn-helix domain protein [Chloroflexus aggregans DSM 9485] Length = 393 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +R+R R+ GM+ + L + +T Q + KYE G + LQ +++ L + Sbjct: 1 MINQRLRQLRLARGMTLDDLAQATNRIVTRQAISKYEHGQAQPSPIVLQRLAQALGVRPT 60 Query: 72 FFFDVSPTVCS 82 D + T Sbjct: 61 DLLDSTNTQIE 71 >gi|95929475|ref|ZP_01312218.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] gi|95134591|gb|EAT16247.1| transcriptional regulator, XRE family [Desulfuromonas acetoxidans DSM 684] Length = 307 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 2/89 (2%) Query: 1 MVGNKKIPNPVDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASR 58 M+ K N I + G IR R ++Q + + +G+T + ++E + Sbjct: 1 MMAEKNQKNDGMIQIDGAAIRQAREDQSLTQLYVAKMVGVTTDTISRWENNRYPTIKRPN 60 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSE 87 + ++E LE P+ V + Sbjct: 61 AEKLAEALEVPLDQILWQEEEVPQPQTRS 89 >gi|126173345|ref|YP_001049494.1| cupin 2 domain-containing protein [Shewanella baltica OS155] gi|152999697|ref|YP_001365378.1| cupin 2 domain-containing protein [Shewanella baltica OS185] gi|160874315|ref|YP_001553631.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|217974352|ref|YP_002359103.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|304409280|ref|ZP_07390900.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS183] gi|307303638|ref|ZP_07583391.1| Cupin 2 conserved barrel domain protein [Shewanella baltica BA175] gi|125996550|gb|ABN60625.1| transcriptional regulator, XRE family with cupin sensor [Shewanella baltica OS155] gi|151364315|gb|ABS07315.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS185] gi|160859837|gb|ABX48371.1| transcriptional regulator, XRE family [Shewanella baltica OS195] gi|217499487|gb|ACK47680.1| transcriptional regulator, XRE family [Shewanella baltica OS223] gi|304351798|gb|EFM16196.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS183] gi|306912536|gb|EFN42959.1| Cupin 2 conserved barrel domain protein [Shewanella baltica BA175] gi|315266550|gb|ADT93403.1| Cupin 2 conserved barrel domain protein [Shewanella baltica OS678] Length = 182 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 33/71 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDIGASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVD 60 Query: 73 FFDVSPTVCSD 83 FF + + S+ Sbjct: 61 FFSIEASADSE 71 >gi|103487098|ref|YP_616659.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977175|gb|ABF53326.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 71 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 27/67 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R + SQ +L + L ++ Q V E G ++ + + PI FD Sbjct: 3 NQLKVLRAMRNWSQAELADRLDVSRQAVNAIETGKYDPSLPLAFKLARLFDMPIEEIFDD 62 Query: 77 SPTVCSD 83 D Sbjct: 63 GHKGQDD 69 >gi|126172361|ref|YP_001048510.1| XRE family transcriptional regulator [Shewanella baltica OS155] gi|125995566|gb|ABN59641.1| transcriptional regulator, XRE family [Shewanella baltica OS155] Length = 509 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A L I+ V Sbjct: 13 FLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAGMLAVIAAVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + +F D P + Sbjct: 73 QKDADWFLDDVPEESAITPD 92 >gi|53716036|ref|YP_104861.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|53721043|ref|YP_110028.1| DNA-binding protein [Burkholderia pseudomallei K96243] gi|67642050|ref|ZP_00440812.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|121596499|ref|YP_990749.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124381530|ref|YP_001025232.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126447905|ref|YP_001077212.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134283993|ref|ZP_01770688.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305] gi|166998988|ref|ZP_02264838.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|167821625|ref|ZP_02453305.1| DNA-binding protein [Burkholderia pseudomallei 91] gi|254179132|ref|ZP_04885785.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254204277|ref|ZP_04910635.1| DNA-binding protein [Burkholderia mallei FMH] gi|254209445|ref|ZP_04915790.1| DNA-binding protein [Burkholderia mallei JHU] gi|254301893|ref|ZP_04969335.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 406e] gi|254359589|ref|ZP_04975861.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|52211457|emb|CAH37447.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|52422006|gb|AAU45576.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121224297|gb|ABM47828.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|126240759|gb|ABO03871.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|134244604|gb|EBA44703.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 305] gi|147744814|gb|EDK51896.1| DNA-binding protein [Burkholderia mallei FMH] gi|147749965|gb|EDK57037.1| DNA-binding protein [Burkholderia mallei JHU] gi|148028776|gb|EDK86736.1| DNA-binding protein [Burkholderia mallei 2002721280] gi|157825063|gb|EDO88955.1| DNA-binding/cupin domain protein [Burkholderia pseudomallei 406e] gi|160694650|gb|EDP84659.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|238523111|gb|EEP86551.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|243064807|gb|EES46993.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|261826366|gb|ABM99779.2| DNA-binding protein [Burkholderia mallei NCTC 10229] Length = 202 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 30/89 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 25 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 + +++ QL Sbjct: 85 AQPKAPETIRVDGPHDIPTLAGHDAQYQL 113 >gi|328955768|ref|YP_004373101.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328456092|gb|AEB07286.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 72 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 1/65 (1%) Query: 13 INVGKRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI+ R GM+Q+ I E+G + L+ I+ L +S Sbjct: 7 KQLGARIKSLRKTRIGMTQDAFARKCAIDETYYAAIEQGRHNPTFLMLKKIASGLRVSLS 66 Query: 72 FFFDV 76 Sbjct: 67 ELLKD 71 >gi|325970144|ref|YP_004246335.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324025382|gb|ADY12141.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 112 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 2/110 (1%) Query: 11 VDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + G+RIR R+ GM+Q L +G++ E G ++ L I++ L++ Sbjct: 3 IDYELLGQRIREARIKTGMTQATLSGIIGLSPSHYSHIESGKAKINLPTLVAIAQALDTT 62 Query: 70 ISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 I D P + + ++++ + + L + IQ+ V R + Sbjct: 63 IDSLLYDSIPVLIDSYDKDFKDLLEDCTRDEKETLLQNTIQMKTVMRRNR 112 >gi|301059073|ref|ZP_07200027.1| helix-turn-helix protein [delta proteobacterium NaphS2] gi|300446806|gb|EFK10617.1| helix-turn-helix protein [delta proteobacterium NaphS2] Length = 119 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 29/72 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +NVG+R++ R ++ + + + +++ E G + +++ L+ Sbjct: 47 DIQVNVGERVKRVRKDRDLTLQDISRRTDLDVAFLEQIENGSVAPPLGTVIKLAKALDLK 106 Query: 70 ISFFFDVSPTVC 81 + +F Sbjct: 107 MGYFISGDEDRP 118 >gi|291523377|emb|CBK81670.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 202 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 32/61 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R +G++Q+KL E GI ++KYE + +L+ I+ L + Sbjct: 1 MTIGEKIKYCRKQIGITQDKLAELTGIHPVSIRKYETNKMQPQPPQLEKIAAALGVSYNA 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|238912528|ref|ZP_04656365.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|320085551|emb|CBY95330.1| HTH-type transcriptional regulator dicA Repressor protein of division inhibition gene dicA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 134 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 3/129 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ G++Q +LG +G T Q V + + L+ + + P+ +FF Sbjct: 4 GERLQRVLNETGITQSELGRRVGATSQSVNGWCQSGILPRKDILELLPKATGKPLYWFFM 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV-RSIVSSEKKYR 134 ++ +L F Q+ V+ + + IEL + + Sbjct: 64 EDDEESDVPERLTQGGPTDLNDRQ-KRLLEIFDQLPTVE-QDRFIELAGTRLQELDDFMA 121 Query: 135 TIEEECMVE 143 + +E Sbjct: 122 EYQRRRKIE 130 >gi|227832369|ref|YP_002834076.1| HTH-type transcriptional regulator [Corynebacterium aurimucosum ATCC 700975] gi|227453385|gb|ACP32138.1| HTH-type transcriptional regulator [Corynebacterium aurimucosum ATCC 700975] Length = 435 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 35/95 (36%), Gaps = 3/95 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R ++Q + + LG++ + + E + + L +++ ++F Sbjct: 7 GARIHALRKERHLTQAAMAKQLGLSTSYLNQLENDQRPLTVTVLMQLTQRFGVDATYF-- 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + +E + S L+ F ++ Sbjct: 65 -AGDRDLRALAELRQLFPEASEATLTDLSGRFPEL 98 >gi|253702724|ref|YP_003023913.1| XRE family transcriptional regulator [Geobacter sp. M21] gi|251777574|gb|ACT20155.1| transcriptional regulator, XRE family [Geobacter sp. M21] Length = 307 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 5/103 (4%) Query: 1 MVGNKKIPNPVD---INV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VG 55 M+ + + + + G RIR R ++Q + +G+T + ++E + Sbjct: 1 MMETNDRADKLSAASVAIDGTRIRTVREAKRLTQLYVANVVGVTTDTISRWENNRYPSIK 60 Query: 56 ASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 Q +++ LE P+ TV D + + T Sbjct: 61 RENAQKLADALEVPLVDILREETTVPEDEAGADLPPPSPRLTK 103 >gi|124008127|ref|ZP_01692825.1| transcriptional regulator, Cro/CI family [Microscilla marina ATCC 23134] gi|123986375|gb|EAY26188.1| transcriptional regulator, Cro/CI family [Microscilla marina ATCC 23134] Length = 269 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 7/128 (5%) Query: 13 INVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + K ++ R G +QE L LGIT + YE G + I++ + Sbjct: 1 MFLSKNLKHLRERNGKQTQENLANALGITRSAISSYEDGRAEPKLVVMNRIAQYFNITLD 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV--RSIVSS 129 +V D+ ++ + ++ + L++ I + + IELV ++ Sbjct: 61 QLLNVELATLGDVDLQQQKEVKKYASAENLRIL----TITTDRENNENIELVPEKAAAGY 116 Query: 130 EKKYRTIE 137 K Y E Sbjct: 117 TKGYADAE 124 >gi|322411768|gb|EFY02676.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 73 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R ++Q+++ L T K E+G + A L IS + I + + Sbjct: 3 QRIRDLREDNDLTQKEVATILSFTHSAYAKIERGERILSAEVLIKISNIYGVNIDYLLGL 62 Query: 77 SP 78 + Sbjct: 63 TD 64 >gi|322374196|ref|ZP_08048729.1| putative transcriptional repressor [Streptococcus sp. C150] gi|321276901|gb|EFX53973.1| putative transcriptional repressor [Streptococcus sp. C150] Length = 66 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R+ ++Q+ L + +G++ Q + EKG + I + L+ + F S Sbjct: 5 KLKSARVAKDLTQQGLADAIGVSRQTISAIEKGDYNPTINLCIAICKTLDKTLDQLFWES 64 Query: 78 PT 79 Sbjct: 65 ED 66 >gi|307546676|ref|YP_003899155.1| transcriptional regulator [Halomonas elongata DSM 2581] gi|307218700|emb|CBV43970.1| probable transcriptional regulator [Halomonas elongata DSM 2581] Length = 196 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 1/99 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R LG++ E L E G++ + K E+G+N + +++ L + F Sbjct: 21 RLKLLRKKLGVTLEALAEGTGLSKSYLSKVERGLNNPSIAAALKLAKALNVQVEELFSDE 80 Query: 78 PTVCSDISSEENNVMDFI-STPDGLQLNRYFIQIDDVKV 115 P S + DGL ++ + ++ Sbjct: 81 PGTQQSYSIVRAEQRGTLTHDNDGLSYASLARRVSEHQL 119 >gi|284800615|ref|YP_003412480.1| hypothetical protein LM5578_0362 [Listeria monocytogenes 08-5578] gi|284993801|ref|YP_003415569.1| hypothetical protein LM5923_0361 [Listeria monocytogenes 08-5923] gi|284056177|gb|ADB67118.1| hypothetical protein LM5578_0362 [Listeria monocytogenes 08-5578] gi|284059268|gb|ADB70207.1| hypothetical protein LM5923_0361 [Listeria monocytogenes 08-5923] Length = 300 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 11/113 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R+ G++Q+++ + I+ +EKG + + S + I + + P+ FF Sbjct: 5 GELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFF- 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY--------FIQIDDVKVRQKII 120 + +++ +DF+ + + + +VR+ I+ Sbjct: 63 -FIYRDFSSTEDDSFWIDFVELSGKNDVVGMQVLLDKITLERTEQTEVRKAIL 114 >gi|302522509|ref|ZP_07274851.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB78] gi|318058819|ref|ZP_07977542.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SA3_actG] gi|318075294|ref|ZP_07982626.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SA3_actF] gi|333023793|ref|ZP_08451857.1| putative UDP-N-acetylglucosamine transferase [Streptomyces sp. Tu6071] gi|302431404|gb|EFL03220.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB78] gi|332743645|gb|EGJ74086.1| putative UDP-N-acetylglucosamine transferase [Streptomyces sp. Tu6071] Length = 509 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G SQ +L E L + V + E+G + + I E L Sbjct: 1 MADDYLVRIGKLIRDARQHRGWSQAQLAEALATSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|228949440|ref|ZP_04111697.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810236|gb|EEM56600.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 138 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 5/134 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ +I VGK I+ R I G+S++++ E L T++ V +E G ++L+ I+ Sbjct: 10 NKMTIDENI-VGKNIKKLRAIKGVSRKEMAEDLNTTYRTVSSWETGEKTPRLNKLEEIAT 68 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L +S + S + L ++ + D + EL++ Sbjct: 69 YLNVSVSSLLKKEIPDEDLLKSIKGEDP---VERLARLLYERYMSVPDKHKPRIEEELLK 125 Query: 125 SIVSSEKKYRTIEE 138 S K EE Sbjct: 126 -YASQLKAQVEQEE 138 >gi|167755728|ref|ZP_02427855.1| hypothetical protein CLORAM_01243 [Clostridium ramosum DSM 1402] gi|167704667|gb|EDS19246.1| hypothetical protein CLORAM_01243 [Clostridium ramosum DSM 1402] Length = 145 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 42/118 (35%), Gaps = 8/118 (6%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R +QE++ + +G++ Q V K+E G + ++++ I + Sbjct: 12 LRKHYQYTQEEIAQQVGVSRQSVAKWESGESLPDIDSCMALAKIYNVTIDNLINHDEDDA 71 Query: 82 SDISSEENNVMDFIST---PDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + T + + + +I + KI+ I+ E++ I Sbjct: 72 GIVIPPKGKHFFGAVTVGERGQIVIPQEARRIFKISAGDKIL-----ILGDEERGLAI 124 >gi|167618211|ref|ZP_02386842.1| DNA-binding protein [Burkholderia thailandensis Bt4] Length = 185 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 4/106 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F S Sbjct: 4 RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSES 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + S R + I +K++ V Sbjct: 64 RDRELITVTRAAQRAPMGSAAS----ARTYESIAAGVAPKKLLPFV 105 >gi|160932465|ref|ZP_02079855.1| hypothetical protein CLOLEP_01303 [Clostridium leptum DSM 753] gi|156868424|gb|EDO61796.1| hypothetical protein CLOLEP_01303 [Clostridium leptum DSM 753] Length = 100 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R G SQ +L + LGI +YE G L+ +S + F D+ Sbjct: 12 QKLKAFRESRGYSQNQLADYLGIERSSYTRYETGETEPSLFALKKLSILYGVSADFLLDI 71 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNR 105 V + ++ + R Sbjct: 72 HMNVNYKLQNDITRKYKILRGYHLDDFIR 100 >gi|149187671|ref|ZP_01865968.1| transcriptional regulator, XRE family with cupin sensor protein [Vibrio shilonii AK1] gi|148838551|gb|EDL55491.1| transcriptional regulator, XRE family with cupin sensor protein [Vibrio shilonii AK1] Length = 182 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 6/117 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G R + R G+SQ +L + G+T + + E + L + + S + Sbjct: 1 METEIGPRFKALRERAGLSQRELAKRAGVTNGFISQIESNAVSPSVASLSKLLSKIPSSM 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + FF V S + + + QI ++I L ++ Sbjct: 61 AEFFAVDEPKPDQFFSRKQQQPEIGRGKIS------YRQIGHYHDDRQIGMLRETLS 111 >gi|148993187|ref|ZP_01822753.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP9-BS68] gi|147928161|gb|EDK79179.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP9-BS68] gi|332072036|gb|EGI82523.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] Length = 215 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 2/97 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + S++S+ + + + L Y +I+ Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYDDL-EYIYRIE 98 >gi|170736981|ref|YP_001778241.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169819169|gb|ACA93751.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 180 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 30/79 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L + G+T + K E+G++ + +S+ L + F S Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLFSES 63 Query: 78 PTVCSDISSEENNVMDFIS 96 + + Sbjct: 64 RNRELITVTRAGERTAMGA 82 >gi|49185356|ref|YP_028608.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49477744|ref|YP_036632.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65319812|ref|ZP_00392771.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|229122064|ref|ZP_04251280.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201] gi|49179283|gb|AAT54659.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49329300|gb|AAT59946.1| DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228661407|gb|EEL17031.1| Transcriptional regulator, XRE [Bacillus cereus 95/8201] Length = 69 Score = 44.8 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R G +QE+L + +G++ Q + EK I+ V E PI+ FD Sbjct: 7 NRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKPITDVFDY 66 Query: 77 SPT 79 Sbjct: 67 QEE 69 >gi|312865715|ref|ZP_07725939.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098836|gb|EFQ57056.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 116 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ G++Q+++ L +T Q + E G + + L +E + + Sbjct: 4 ERLKSLRLEAGLTQKEIATKLNMTQPQYARTENGGRKPSSETLNKFAEFFDVSTDYLLGN 63 Query: 77 S 77 S Sbjct: 64 S 64 >gi|312977554|ref|ZP_07789302.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] gi|310895985|gb|EFQ45051.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] Length = 76 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 KI N V+ G+R++ R +QE+LG + ++ + +YE G++ + +++V Sbjct: 2 KIMNDVEKF-GRRLKRFRKNKHYTQERLGREVYVSDTTIGRYEHGISMPDKRMVYELAQV 60 Query: 66 LESPISFFFDVSPTVC 81 L + Sbjct: 61 LGVTPDQLLGLESKEE 76 >gi|307277179|ref|ZP_07558283.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306506109|gb|EFM75275.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|323481377|gb|ADX80816.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 111 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 10 IREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD--- 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIE 121 V D E + +ST D ++ Y + R ++++ Sbjct: 67 NVVVDYEEEFLALYRSLSTEDAVRTIDYMKLLKRQENERNQLLK 110 >gi|295107365|emb|CBL04908.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 289 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 29/72 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R + MSQ L + +G++ Q V K+E + +L I ++ + Sbjct: 22 NLQHLRDLQDMSQADLAQRIGVSRQSVAKWEAEKSYPEMDKLIKICDLFGCSLDDLVRGD 81 Query: 78 PTVCSDISSEEN 89 S+E + Sbjct: 82 LAGREAASAEPS 93 >gi|284040164|ref|YP_003390094.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283819457|gb|ADB41295.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 68 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +IR R G++Q++L E LG++ V +YE G + L I+ L S Sbjct: 11 QIRDARKAKGLTQKELAEKLGVSESTVNQYESGKQNLTIDTLVKIANALGMKFSTLLS 68 >gi|229096267|ref|ZP_04227240.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] gi|228687227|gb|EEL41132.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] Length = 405 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 2/130 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R ++Q L +T + + E G LQ+I+E L SF Sbjct: 5 LGAKIKTLRKEKKLTQTDL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + ++ + ++ + ++ +Q + L + V++ K + Sbjct: 64 EDDDVEMIELIQQMEQLIKANKYDEVYEILLPIVQKELPPTLNT-ARLYKQFVTAAAKMK 122 Query: 135 TIEEECMVEQ 144 E VE+ Sbjct: 123 DYNIEHYVEK 132 >gi|163751558|ref|ZP_02158780.1| transcriptional regulator, putative [Shewanella benthica KT99] gi|161328566|gb|EDP99719.1| transcriptional regulator, putative [Shewanella benthica KT99] Length = 184 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R G+SQ +L + G+T + EK + L+ + L + FF Sbjct: 5 IGASLKVIRKQKGLSQRELAKRAGVTNSTISMIEKNSVSPSVNSLKKVLSGLSLSLVDFF 64 Query: 75 DVSPTVCSDI 84 + S+ Sbjct: 65 SMEGNTQSEA 74 >gi|217975334|ref|YP_002360085.1| XRE family transcriptional regulator [Shewanella baltica OS223] gi|217500469|gb|ACK48662.1| transcriptional regulator, XRE family [Shewanella baltica OS223] Length = 103 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 10/97 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGA 56 M P P+ R++ R+ G+SQ++LG LG+ + +YEKG + Sbjct: 1 MADKIINPLPI------RLKQARISKGISQKQLGIQLGMEVGSASARMNQYEKGKHTPDY 54 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 L+ ++ L P+++FF S + + E D Sbjct: 55 KTLKAMANELGVPVAYFFCESKSTAELLCLLEKMTED 91 >gi|297581782|ref|ZP_06943703.1| DNA methyltransferase [Vibrio cholerae RC385] gi|297533876|gb|EFH72716.1| DNA methyltransferase [Vibrio cholerae RC385] Length = 69 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 27/62 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGKRI R G+SQ+KL I V + E+G + +L +++ L Sbjct: 7 VIVGKRIAKIRKSKGLSQDKLALLSEIDRSYVGRIERGEVNITLEKLYELADTLGCDAKE 66 Query: 73 FF 74 Sbjct: 67 LL 68 >gi|66395676|ref|YP_240035.1| ORF020 [Staphylococcus phage 47] gi|209363558|ref|YP_002267976.1| probable transcriptional repressor [Staphylococcus phage phi2958PVL] gi|257428267|ref|ZP_05604665.1| transcriptional repressor [Staphylococcus aureus subsp. aureus 65-1322] gi|282905891|ref|ZP_06313746.1| transcriptional repressor [Staphylococcus aureus subsp. aureus Btn1260] gi|282919258|ref|ZP_06326993.1| transcriptional repressor [Staphylococcus aureus subsp. aureus C427] gi|284024543|ref|ZP_06378941.1| transcriptional repressor [Staphylococcus aureus subsp. aureus 132] gi|62636100|gb|AAX91211.1| ORF020 [Staphylococcus phage 47] gi|208973059|dbj|BAG74375.1| probable transcriptional repressor [Staphylococcus phage phi2958PVL] gi|257275108|gb|EEV06595.1| transcriptional repressor [Staphylococcus aureus subsp. aureus 65-1322] gi|282317068|gb|EFB47442.1| transcriptional repressor [Staphylococcus aureus subsp. aureus C427] gi|282331183|gb|EFB60697.1| transcriptional repressor [Staphylococcus aureus subsp. aureus Btn1260] Length = 204 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 32/65 (49%), Gaps = 1/65 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFDVS 77 I+ RR L ++ E++G+ +G+ V+K+E G + + ++ +++ L S+ + Sbjct: 5 IKSRRKELNLTLEQVGDLVGVGKSTVRKWETGDIENMKRDKIVKLAKALRVSPSYIMGIE 64 Query: 78 PTVCS 82 Sbjct: 65 DEKPQ 69 >gi|30020574|ref|NP_832205.1| XRE family transcriptional regulator [Bacillus cereus ATCC 14579] gi|228958740|ref|ZP_04120453.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|229109926|ref|ZP_04239508.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] gi|229127880|ref|ZP_04256866.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] gi|229145086|ref|ZP_04273479.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|296503031|ref|YP_003664731.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] gi|29896125|gb|AAP09406.1| Transcriptional regulator, XRE family [Bacillus cereus ATCC 14579] gi|228638407|gb|EEK94844.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228655645|gb|EEL11497.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] gi|228673580|gb|EEL28842.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] gi|228800955|gb|EEM47859.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|296324083|gb|ADH07011.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 292 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ F Sbjct: 6 LGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYIF 64 Query: 75 DVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + D + +L + D Sbjct: 65 ALTKNKKIKYIENVKCVMRDCVKQKQYNELYEIVKKEKDEN 105 >gi|328545558|ref|YP_004305667.1| transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326415299|gb|ADZ72362.1| Probable transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 478 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 1/123 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R G+SQ LG++ V + E V V A L +S + ++ F Sbjct: 8 GHVLRKIRERAGLSQVGFATRLGLSPSYVNQLESNVRPVSAGVLIAVSREFGADLASFEA 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E F GLQ + + + ++L ++ ++ + Sbjct: 68 SDLDRLVADLGEAFADSRFHDGSVGLQDLKS-VATHTPDFARAFLDLYGALRRMSEQQAS 126 Query: 136 IEE 138 +++ Sbjct: 127 LDD 129 >gi|322804684|emb|CBZ02236.1| xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium botulinum H04402 065] Length = 434 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++E L + I +F Sbjct: 6 LGEKIKRRRKELNMTLKDL-AGDRITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + T I N+ + D L + + Sbjct: 65 ESEDTQAEKICKYYENIAESHIINDNLNIAEQY 97 >gi|317491564|ref|ZP_07950000.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921111|gb|EFV42434.1| peptidase S24 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 230 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 1/113 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R M+ +L +G + + E+G+ + L+ I++ L IS F Sbjct: 4 IGNKIRQIRKAKKMTILELANAVGSDVGNISRLERGIQGYSDAMLRKIADGLSVHISELF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + S ++ + + + D ++E++RSI Sbjct: 64 STEDDGGTVDSYSVKSLSESGRKNVYRVDVLDVSASAGDGANTGDVVEIIRSI 116 >gi|313898304|ref|ZP_07831841.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956686|gb|EFR38317.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 180 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 3/106 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITF--QQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R++ R M+++++G+ +GI + ++ YE G L ++E L+ S+ Sbjct: 4 LGYRLKKVRKARRMTRKEIGDLIGINYADTRLDAYETGKTYPREKMLNKLAEALDVSSSW 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + S EE + + P + +Y+ Q D R K Sbjct: 64 LATGELDDKTVKSLEEKGIFYVVFKPFSEE-IKYYYQYTDFLARNK 108 >gi|309388333|gb|ADO76213.1| transcriptional regulator, XRE family [Halanaerobium praevalens DSM 2228] Length = 375 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 KR++ R +SQ+KL E LG + YE+ + + I++ + + Sbjct: 6 KRLKNIRNQHNLSQKKLAEELGYARTTISNYEQNIRIPSLQTITEIADYFNVSVDYLL 63 >gi|224541773|ref|ZP_03682312.1| hypothetical protein CATMIT_00945 [Catenibacterium mitsuokai DSM 15897] gi|224525300|gb|EEF94405.1| hypothetical protein CATMIT_00945 [Catenibacterium mitsuokai DSM 15897] Length = 68 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 28/60 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R+ G+SQE+LG ++ + E+G V + ++ L + FD Sbjct: 8 GMRIKELRVQQGISQEELGFRCHLSKNYISDVERGTRNVSLKAIDQFAKGLGITLKELFD 67 >gi|209919284|ref|YP_002293368.1| hypothetical protein ECSE_2093 [Escherichia coli SE11] gi|209912543|dbj|BAG77617.1| hypothetical phage protein [Escherichia coli SE11] Length = 167 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 31/82 (37%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + R+R +R G++ +L L + + + ++E G S L ++ VL Sbjct: 65 NSAINNRLRTQREACGLTTAELARLLDLDEEIIIQWESGEYEPTISMLIPLANVLGCDPM 124 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 T SEE D Sbjct: 125 RLLTGEVTPPEQPKSEEQQHHD 146 >gi|49187883|ref|YP_031136.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|167634898|ref|ZP_02393216.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167639942|ref|ZP_02398210.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170685616|ref|ZP_02876839.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707037|ref|ZP_02897494.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177652240|ref|ZP_02934743.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190567224|ref|ZP_03020139.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196033157|ref|ZP_03100570.1| DNA-binding protein [Bacillus cereus W] gi|218906227|ref|YP_002454061.1| DNA-binding protein [Bacillus cereus AH820] gi|227817802|ref|YP_002817811.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229603307|ref|YP_002869269.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254687363|ref|ZP_05151220.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254725376|ref|ZP_05187159.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254733728|ref|ZP_05191444.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254740566|ref|ZP_05198257.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254753172|ref|ZP_05205208.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254761515|ref|ZP_05213536.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|49181810|gb|AAT57186.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|167512023|gb|EDR87401.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529648|gb|EDR92397.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170128140|gb|EDS97010.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170670080|gb|EDT20820.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172082246|gb|EDT67312.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190561728|gb|EDV15698.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195994586|gb|EDX58541.1| DNA-binding protein [Bacillus cereus W] gi|218539421|gb|ACK91819.1| DNA-binding protein [Bacillus cereus AH820] gi|227005411|gb|ACP15154.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229267715|gb|ACQ49352.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 73 Score = 44.4 bits (103), Expect = 0.004, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 27/73 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R+R R +SQ LG+ +G + Q + E+G I+ + P+ Sbjct: 1 MKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEE 60 Query: 73 FFDVSPTVCSDIS 85 F + Sbjct: 61 IFTLVEGEDDGEE 73 >gi|309777338|ref|ZP_07672299.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308914879|gb|EFP60658.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 190 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I++ R +SQE L L ++ Q V K+EKG+++ + L ++E+ I + S Sbjct: 3 KIKMLRTEHQLSQESLAALLDVSRQSVSKWEKGLSKPSSENLARLAEIFSVHIQDLMNDS 62 >gi|307701893|ref|ZP_07638902.1| helix-turn-helix domain protein [Streptococcus mitis NCTC 12261] gi|307616708|gb|EFN95896.1| helix-turn-helix domain protein [Streptococcus mitis NCTC 12261] Length = 158 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 34/95 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFAQIIGISRNSLSRYENGTSPVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|300940028|ref|ZP_07154650.1| helix-turn-helix protein [Escherichia coli MS 21-1] gi|300455126|gb|EFK18619.1| helix-turn-helix protein [Escherichia coli MS 21-1] Length = 118 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 7/106 (6%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++G+R+ R G++Q + LGI+ + + E G G L + + + Sbjct: 1 MSKDIGERVISVRKKAGLNQREFAARLGISNGGISQIENGKAMPGGEFLLKMHQEFNVDV 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ T + + +P+ +L F + + R Sbjct: 61 NWLLTGMSTDGMTRNQNQ-------ISPEKQKLIDTFDDMTPDQQR 99 >gi|298693412|gb|ADI96634.1| Putative transcription regulator [Staphylococcus aureus subsp. aureus ED133] gi|323440125|gb|EGA97839.1| transcriptional regulator [Staphylococcus aureus O11] Length = 391 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE S++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|295691904|ref|YP_003600514.1| transcriptional regulator, xre family [Lactobacillus crispatus ST1] gi|295030010|emb|CBL49489.1| Transcriptional regulator, XRE family [Lactobacillus crispatus ST1] Length = 270 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 42/112 (37%), Gaps = 1/112 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++ R LG++Q ++ + I+ K E+ ++ +G + L + ++ Sbjct: 1 MTIGSALKQLRTKLGLTQAEMAAGI-ISVSFYSKVERDIHDIGTTELIELLNQHNIDVTT 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 FF + S ++ ++ + + + + E R Sbjct: 60 FFTTYISPKSKPDTDILEQINTAYERGDKKELLKIQTKLNALPKDHVTEYYR 111 >gi|289644398|ref|ZP_06476479.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289505791|gb|EFD26809.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 261 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 41/113 (36%), Gaps = 2/113 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-- 72 VG+ +R R +SQ +L I+ + + E G +R + +SE L P+ Sbjct: 11 VGQLLRDWRERRRLSQLELSNQAEISTRHLSFVETGRSRPTPEMIIRLSEHLNVPLRERN 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 ++ + + S L+L + + + EL+ + Sbjct: 71 LLLLAGGYAPAYPQHGLDEPELASVRTALRLVLSGHEPCPALMINRWWELLDA 123 >gi|283767889|ref|ZP_06340804.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|283461768|gb|EFC08852.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19] Length = 391 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE S++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|282915477|ref|ZP_06323249.1| transcriptional regulator [Staphylococcus aureus subsp. aureus D139] gi|282320580|gb|EFB50918.1| transcriptional regulator [Staphylococcus aureus subsp. aureus D139] Length = 391 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE S++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|253575334|ref|ZP_04852672.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845331|gb|EES73341.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 111 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 1/86 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 ++G+RI+ R G S +L E + + E+ + S ++ I++ L I+ Sbjct: 4 HIGERIQKLRQDRGYSLSELAEKADVAKSYLSNVERNIQSNPSISFIEKIADALNVSINL 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 + E + ++ T Sbjct: 64 LLYGDRPAPELLDPEWSELVQEAMTS 89 >gi|262200767|ref|YP_003271975.1| XRE family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262084114|gb|ACY20082.1| helix-turn-helix domain protein [Gordonia bronchialis DSM 43247] Length = 182 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 22/73 (30%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI R MS L GI + + E G L ++ L P+S Sbjct: 15 AIGARITELRTARSMSLSALARAAGIGKGSLSELESGQRNPTIDTLYAVAGPLGVPLSAL 74 Query: 74 FDVSPTVCSDISS 86 S Sbjct: 75 LGEESGTEGSGRS 87 >gi|226313439|ref|YP_002773333.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226096387|dbj|BAH44829.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 185 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 34/64 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR+ R G + E + G++ + + E+G+++ L I++ LESPI FF Sbjct: 8 IGHKIRMIRKERGFTLEIMAGKTGLSKGLLSQVERGISQPSLDSLWKITKALESPIIHFF 67 Query: 75 DVSP 78 + Sbjct: 68 EDID 71 >gi|225406864|ref|ZP_03761053.1| hypothetical protein CLOSTASPAR_05085 [Clostridium asparagiforme DSM 15981] gi|225042620|gb|EEG52866.1| hypothetical protein CLOSTASPAR_05085 [Clostridium asparagiforme DSM 15981] Length = 63 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 IR +R G+SQE+L + G++ Q V E + H++ L++ + F Sbjct: 5 IRDKRKQQGLSQEELAKRCGVSRQTVNAIENDKYDPTLALAFHLARELDTRVDELFT 61 >gi|168177751|ref|ZP_02612415.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum NCTC 2916] gi|168181271|ref|ZP_02615935.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum Bf] gi|226947637|ref|YP_002802728.1| tetratricopeptide repeat/DNA binding domain-containing protein [Clostridium botulinum A2 str. Kyoto] gi|237793726|ref|YP_002861278.1| tetratricopeptide repeat/DNA binding domain-containing protein [Clostridium botulinum Ba4 str. 657] gi|182671545|gb|EDT83519.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum NCTC 2916] gi|182675370|gb|EDT87331.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum Bf] gi|226840984|gb|ACO83650.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum A2 str. Kyoto] gi|229261791|gb|ACQ52824.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum Ba4 str. 657] Length = 434 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++E L + I +F Sbjct: 6 LGEKIKRRRKELNMTLKDL-AGDRITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + T I N+ + D L + + Sbjct: 65 ESEDTQAEKICKYYENIAESHIINDNLNIAEQY 97 >gi|148378407|ref|YP_001252948.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum A str. ATCC 3502] gi|153932397|ref|YP_001382785.1| TPR repeat-containing DNA binding protein [Clostridium botulinum A str. ATCC 19397] gi|153936558|ref|YP_001386336.1| TPR repeat-containing DNA binding protein [Clostridium botulinum A str. Hall] gi|148287891|emb|CAL81957.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152928441|gb|ABS33941.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum A str. ATCC 19397] gi|152932472|gb|ABS37971.1| tetratricopeptide repeat/DNA binding domain protein [Clostridium botulinum A str. Hall] Length = 434 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++E L + I +F Sbjct: 6 LGEKIKRRRKELNMTLKDL-AGDRITPGQISLVESGKSNPSMDLLEYLAETLNTSIEYFM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + T I N+ + D L + + Sbjct: 65 ESEDTQAEKICKYYENIAESHIINDNLNIAEQY 97 >gi|116332766|ref|YP_794293.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116098113|gb|ABJ63262.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 104 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/98 (13%), Positives = 34/98 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R ++Q+ + + ++ Q + +E G + L +S + + Sbjct: 1 MTLGAKLKQARADHQLTQQAVATQVAVSRQTISSWETGKSFPDIDSLVTLSNLYGLSLDI 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + + E LN F+ I Sbjct: 61 LIKEDTGMLDYLRKSEILRKLRPIYQSMQILNFLFLII 98 >gi|126700949|ref|YP_001089846.1| putative transposon-related DNA-binding protein [Clostridium difficile 630] gi|237733571|ref|ZP_04564052.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|115252386|emb|CAJ70227.1| Transcriptional regulator, HTH-type Tn916-like,CTn6-Orf6 [Clostridium difficile] gi|229383404|gb|EEO33495.1| conserved hypothetical protein [Coprobacillus sp. D7] gi|291561400|emb|CBL40199.1| Helix-turn-helix [butyrate-producing bacterium SS3/4] Length = 118 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 3/101 (2%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D +G I+ R G+++E++G + I + + E L + Sbjct: 2 RKKEDKYDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLV 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 +L + FF P S++ + + I L Sbjct: 62 SLLNVSVDEFF--LPASSQVKSTKRRQLENKIDNFTDADLV 100 >gi|78044139|ref|YP_360516.1| prophage LambdaCh01, PBSX family transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77996254|gb|ABB15153.1| prophage LambdaCh01, transcriptional regulator, PBSX family [Carboxydothermus hydrogenoformans Z-2901] Length = 76 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R G++Q ++ + LGI+ + E G R+ I+ +L+ + F Sbjct: 2 NKLKQLRKANGLTQMEMAKKLGISESYYCQIENGTRRMSLKTALDIAAILKVTPNDLF 59 >gi|325662744|ref|ZP_08151338.1| hypothetical protein HMPREF0490_02078 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470981|gb|EGC74209.1| hypothetical protein HMPREF0490_02078 [Lachnospiraceae bacterium 4_1_37FAA] Length = 194 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 34/61 (55%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R G +Q+ L LG + + +QKYE G V + + +++VL++ ++ Sbjct: 8 AIGERIKTLRKKRGYNQKDLATLLGKSLRTIQKYESGEIEVSIAMVNELAKVLDTTSTYL 67 Query: 74 F 74 Sbjct: 68 L 68 >gi|323352799|ref|ZP_08087769.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|322121835|gb|EFX93581.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|325688158|gb|EGD30177.1| transcriptional regulator [Streptococcus sanguinis SK72] gi|325694179|gb|EGD36097.1| transcriptional regulator [Streptococcus sanguinis SK150] gi|327469090|gb|EGF14562.1| transcriptional regulator [Streptococcus sanguinis SK330] gi|328945639|gb|EGG39790.1| transcriptional regulator [Streptococcus sanguinis SK1087] gi|332363393|gb|EGJ41178.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 65 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R M+Q L + +G+T Q + E G S I + L + F Sbjct: 6 RLKMARAEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLF 62 >gi|319649465|ref|ZP_08003621.1| hypothetical protein HMPREF1013_00225 [Bacillus sp. 2_A_57_CT2] gi|317398627|gb|EFV79309.1| hypothetical protein HMPREF1013_00225 [Bacillus sp. 2_A_57_CT2] Length = 148 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/138 (12%), Positives = 49/138 (35%), Gaps = 8/138 (5%) Query: 15 VGKRIRLRRMIL-----GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GKR+R R +Q + +G+ YE G + + +++V + Sbjct: 4 LGKRLRQLREEKKKENSKFTQGYVANLIGVARVTYTSYENGTKQPPIETVNKLADVFDVS 63 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID---DVKVRQKIIELVRSI 126 + S + + I +E++ + + + + I L+ ++ Sbjct: 64 TDYLQGRSDSRKAAIVTEKDEKDIAKRMEQIREDLTKVDGLSFQGEPLSEEAIESLMEAM 123 Query: 127 VSSEKKYRTIEEECMVEQ 144 ++ I ++ + ++ Sbjct: 124 EHIVRQTERINKKYIPKK 141 >gi|308071596|ref|YP_003873201.1| transcriptional regulator sinR [Paenibacillus polymyxa E681] gi|305860875|gb|ADM72663.1| HTH-type transcriptional regulator sinR [Paenibacillus polymyxa E681] Length = 114 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RIR R G++Q++L E G+ + E+G L+ + L IS Sbjct: 8 VGERIRTIRKAKGLTQQQLAELSGLDDAYIGSVERGERNFSIDTLEKVLTALNVSISELM 67 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 + D + + + +F++ Sbjct: 68 FSKEHMTKDETIRQEAIDEFVA 89 >gi|304407873|ref|ZP_07389524.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304343356|gb|EFM09199.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 95 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI R G++Q++L + LGI + + E A ++ +S+ + PI Sbjct: 7 AIGNRISRIRKHRGITQQQLADALGIDRASLSQIETCRYSPRAETIRKLSDFFQLPIGDI 66 Query: 74 F 74 F Sbjct: 67 F 67 >gi|302392845|ref|YP_003828665.1| XRE family transcriptional regulator [Acetohalobium arabaticum DSM 5501] gi|302204922|gb|ADL13600.1| transcriptional regulator, XRE family [Acetohalobium arabaticum DSM 5501] Length = 129 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 12/125 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R+ + Q+ + E L +T + YE+G + L +++ E + + Sbjct: 5 KRLKKLRLEHNLRQKDIAEDLNLTPSAIGFYEQGKRKPDFEMLSRLADYFEVSVDYLLGR 64 Query: 77 SPTV----------CSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVR 124 + ++ N P+ L + Q + K Q +IE ++ Sbjct: 65 TKKDQFYHSQQKQGKMVKENQTNYCAQDNEVPNRDDLAKLVQQAESLPPKAIQALIEFIQ 124 Query: 125 SIVSS 129 ++ Sbjct: 125 TMEEE 129 >gi|283780906|ref|YP_003371661.1| XRE family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283439359|gb|ADB17801.1| transcriptional regulator, XRE family [Pirellula staleyi DSM 6068] Length = 183 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 41/124 (33%), Gaps = 8/124 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R G++ E+L E G+T + K E L I+E + Sbjct: 8 QRIREMRTSAGLTLEELAEKTGMTRGVISKIENFRVTPSLPTLAKIAEAFGVSTADLLAG 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + + ++ ++ I+L+ ++ + + Sbjct: 68 LDQRPQIVVVRKEERQEITRDGSAIRYFALAH--------KRAIKLMEPMLLEIQPGKGR 119 Query: 137 EEEC 140 +E+ Sbjct: 120 DEKL 123 >gi|323526312|ref|YP_004228465.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323383314|gb|ADX55405.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 74 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R G SQE+L G+ + E+G + + ++ L + + Sbjct: 10 GKRLIALRKARGWSQERLALESGLARSYIGGIERGQRNIALYNICVLAATLGISPASMLE 69 Query: 76 VSP 78 Sbjct: 70 FDE 72 >gi|257877218|ref|ZP_05656871.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257811384|gb|EEV40204.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 198 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 31/78 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R L +SQE L E L ++ Q + +E + L +S + + + Sbjct: 8 MNLSKQIKKHRERLSLSQEGLAEKLYVSRQTISNWENEKSYPDVHNLLLLSVLFDVSLDE 67 Query: 73 FFDVSPTVCSDISSEENN 90 + + Sbjct: 68 LVKGDVEQMKETIEKTEM 85 >gi|257867132|ref|ZP_05646785.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257873466|ref|ZP_05653119.1| transcriptional regulator [Enterococcus casseliflavus EC10] gi|257801188|gb|EEV30118.1| transcriptional regulator [Enterococcus casseliflavus EC30] gi|257807630|gb|EEV36452.1| transcriptional regulator [Enterococcus casseliflavus EC10] Length = 191 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 31/80 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ K+I+ R L +SQE L E L ++ Q + +E + L +S + + + Sbjct: 1 MNLSKQIKKHRERLSLSQEGLAEKLYVSRQTISNWENEKSYPDVHNLLLLSVLFDVSLDE 60 Query: 73 FFDVSPTVCSDISSEENNVM 92 + + Sbjct: 61 LVKGDVEQMKETIEKTAMDH 80 >gi|242240827|ref|YP_002989008.1| XRE family transcriptional regulator [Dickeya dadantii Ech703] gi|242132884|gb|ACS87186.1| transcriptional regulator, XRE family [Dickeya dadantii Ech703] Length = 86 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ ++QEKLG GI ++ +YE G++R + ++VL P +F Sbjct: 5 RLKTARLRANLTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMICAFAKVLNVPECYF 64 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 + V + N + + Sbjct: 65 YTVDDDFAEVVLKTHNQWSNNL 86 >gi|229593332|ref|YP_002875451.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|312963834|ref|ZP_07778305.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] gi|229365198|emb|CAY53478.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25] gi|311281869|gb|EFQ60479.1| transcriptional regulator, XRE family [Pseudomonas fluorescens WH6] Length = 182 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVE 60 Query: 73 FFDVS 77 FF Sbjct: 61 FFSEE 65 >gi|283797040|ref|ZP_06346193.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075456|gb|EFE12820.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291528288|emb|CBK93874.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] gi|291534520|emb|CBL07632.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 207 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R + RR LG++Q + E +G+T +Q+YE G +++ L + + Sbjct: 11 IGSRAKSRRQELGLNQPYVAEKMGVTASTIQRYEAGTIDNTKKMTLEGLADALHVSVEWL 70 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ + + + T +L Q + + ++ ++R Sbjct: 71 KGETDEYETDITDKRELQIRDVMTSILNKLPYDMEQSESDFSKDLLLLMLRE 122 >gi|297191369|ref|ZP_06908767.1| UDP-N-acetylglucosamine transferase [Streptomyces pristinaespiralis ATCC 25486] gi|197720621|gb|EDY64529.1| UDP-N-acetylglucosamine transferase [Streptomyces pristinaespiralis ATCC 25486] Length = 509 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MSDDYLVRIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|295835925|ref|ZP_06822858.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB74] gi|197698390|gb|EDY45323.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. SPB74] Length = 509 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G SQ +L E L + V + E+G + + I E L Sbjct: 1 MADDYLVRIGKLIRDARQHRGWSQAQLAEALATSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|167756260|ref|ZP_02428387.1| hypothetical protein CLORAM_01791 [Clostridium ramosum DSM 1402] gi|167703668|gb|EDS18247.1| hypothetical protein CLORAM_01791 [Clostridium ramosum DSM 1402] Length = 71 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R L M+Q+ L + +G++ Q + EKG I +VL + F Sbjct: 6 RIKAARAALDMTQKDLADAVGVSRQTMNAIEKGDYNPTVKLCIKICKVLNKSLDELFWED 65 >gi|164686153|ref|ZP_02210183.1| hypothetical protein CLOBAR_02591 [Clostridium bartlettii DSM 16795] gi|164601755|gb|EDQ95220.1| hypothetical protein CLOBAR_02591 [Clostridium bartlettii DSM 16795] Length = 183 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 36/95 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ +R R LG+S ++ + G++ + + E+G + S L IS L+ + Sbjct: 8 VGQNLRRLRNSLGLSLDEASKLTGVSKAMLGQIERGESSPTISTLWKISSGLKVNFTSLL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 D + ++ + L F Sbjct: 68 DDEQNELVLVKKDDIKAIKEEEGKMVLYPIFQFSS 102 >gi|21230716|ref|NP_636633.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188992439|ref|YP_001904449.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. B100] gi|21112308|gb|AAM40557.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167734199|emb|CAP52407.1| transcriptional regulator [Xanthomonas campestris pv. campestris] Length = 460 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 55/134 (41%), Gaps = 10/134 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R G++Q +L LG++ + + E+ + + Q + L Sbjct: 11 QLGLRLQRLRQRHGLTQAELARRLGLSPSYLNQIERNQRPLTLAIQQRLKTALG------ 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVRSIVSSE 130 D+ + +D + +D G L+ +++ +V Q +++L R+ + Sbjct: 65 -DLDGLLSADDPAALVEPLDEALRALGHGLSAAELRMLTGNLPQVAQALLDLQRAHTHLQ 123 Query: 131 KKYRTIEEECMVEQ 144 ++ +E + E Sbjct: 124 ERTAALEVQVGAEH 137 >gi|29348192|ref|NP_811695.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253569505|ref|ZP_04846915.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|298386116|ref|ZP_06995673.1| DNA-binding protein [Bacteroides sp. 1_1_14] gi|29340095|gb|AAO77889.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|251841524|gb|EES69605.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|298261344|gb|EFI04211.1| DNA-binding protein [Bacteroides sp. 1_1_14] Length = 191 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R +S E+L + G+ +Q+++ E ++ + L I+ VL + Sbjct: 5 KIVGEKIKALREDKSISIEELAQRSGLAIEQIERIENNIDIPSLAPLIKIARVLGVRLGT 64 Query: 73 FFDVSPT------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F D + + + I + ++ + D + II+++ Sbjct: 65 FLDDQDEIGPVVCRKKEAKDAISFSNNAIHSRKHMEYHSLSKSKADRHMEPFIIDVM 121 >gi|15923137|ref|NP_370671.1| transcription regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15925851|ref|NP_373384.1| hypothetical protein SA0142 [Staphylococcus aureus subsp. aureus N315] gi|148266573|ref|YP_001245516.1| hypothetical protein SaurJH9_0133 [Staphylococcus aureus subsp. aureus JH9] gi|150392612|ref|YP_001315287.1| hypothetical protein SaurJH1_0138 [Staphylococcus aureus subsp. aureus JH1] gi|156978477|ref|YP_001440736.1| hypothetical protein SAHV_0146 [Staphylococcus aureus subsp. aureus Mu3] gi|253316322|ref|ZP_04839535.1| hypothetical protein SauraC_09311 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255004944|ref|ZP_05143545.2| hypothetical protein SauraM_00705 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794038|ref|ZP_05643017.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|258408554|ref|ZP_05680839.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|258421144|ref|ZP_05684071.1| transcription regulator [Staphylococcus aureus A9719] gi|258438894|ref|ZP_05689985.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|258444129|ref|ZP_05692463.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258447008|ref|ZP_05695158.1| transcription regulator [Staphylococcus aureus A6300] gi|258448466|ref|ZP_05696579.1| transcription regulator [Staphylococcus aureus A6224] gi|258455699|ref|ZP_05703654.1| transcription regulator [Staphylococcus aureus A5937] gi|269201799|ref|YP_003281068.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282894370|ref|ZP_06302600.1| hypothetical protein SGAG_01720 [Staphylococcus aureus A8117] gi|282926254|ref|ZP_06333886.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|295405418|ref|ZP_06815228.1| hypothetical protein SMAG_00571 [Staphylococcus aureus A8819] gi|296276513|ref|ZP_06859020.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus MR1] gi|297244755|ref|ZP_06928635.1| hypothetical protein SLAG_00845 [Staphylococcus aureus A8796] gi|13700063|dbj|BAB41362.1| SA0142 [Staphylococcus aureus subsp. aureus N315] gi|14245914|dbj|BAB56309.1| similar to transcription regulator [Staphylococcus aureus subsp. aureus Mu50] gi|147739642|gb|ABQ47940.1| protein of unknown function DUF955 [Staphylococcus aureus subsp. aureus JH9] gi|149945064|gb|ABR51000.1| protein of unknown function DUF955 [Staphylococcus aureus subsp. aureus JH1] gi|156720612|dbj|BAF77029.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|257788010|gb|EEV26350.1| conserved hypothetical protein [Staphylococcus aureus A9781] gi|257840563|gb|EEV65022.1| conserved hypothetical protein [Staphylococcus aureus A9763] gi|257842568|gb|EEV66990.1| transcription regulator [Staphylococcus aureus A9719] gi|257847770|gb|EEV71766.1| conserved hypothetical protein [Staphylococcus aureus A9299] gi|257850388|gb|EEV74336.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257854021|gb|EEV76974.1| transcription regulator [Staphylococcus aureus A6300] gi|257858097|gb|EEV80985.1| transcription regulator [Staphylococcus aureus A6224] gi|257861911|gb|EEV84684.1| transcription regulator [Staphylococcus aureus A5937] gi|262074089|gb|ACY10062.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282591583|gb|EFB96654.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282763415|gb|EFC03545.1| hypothetical protein SGAG_01720 [Staphylococcus aureus A8117] gi|285815872|gb|ADC36359.1| Putative transcription regulator [Staphylococcus aureus 04-02981] gi|294969493|gb|EFG45512.1| hypothetical protein SMAG_00571 [Staphylococcus aureus A8819] gi|297178272|gb|EFH37519.1| hypothetical protein SLAG_00845 [Staphylococcus aureus A8796] gi|312828665|emb|CBX33507.1| helix-turn-helix family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130120|gb|EFT86108.1| hypothetical protein CGSSa03_04609 [Staphylococcus aureus subsp. aureus CGS03] gi|329725707|gb|EGG62186.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21172] Length = 391 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE S++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|313674149|ref|YP_004052145.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312940847|gb|ADR20037.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 214 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 27/59 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+ I+ R + G++Q +L + + ++ + YE+G + +EV + I Sbjct: 5 GENIKKIRSVRGLTQSQLADIIDVSRGVISSYEEGRAEPKIETIIKTAEVFQVTIDTLL 63 >gi|311894823|dbj|BAJ27231.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 191 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 32/83 (38%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + V + + ++ R+ G + + L G++ V + E+ + +++ L Sbjct: 4 ADLVTQALARNLKRLRLERGHTLDALAARSGVSRGMVVQIEQARTNPSVGTVVRLADALG 63 Query: 68 SPISFFFDVSPTVCSDISSEENN 90 I+ D + I+ E+ Sbjct: 64 VSIARLLDYDASSEVRITPVEDA 86 >gi|291528651|emb|CBK94237.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 213 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 13/142 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R+ M+Q++L + G+ ++ YE G + L +I+ L Sbjct: 9 VGYLIRNFRIASDMTQKELADKCGLNESTIRNYELGNRYPDEATLLNIANNLGVSFYALS 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF----IQIDDVKVR--------QKIIEL 122 D ++ ++ + ++ R QK++E Sbjct: 69 DPDVANIFSALHVLFDIEWAYGLRPTIKDGEVYFKFEKRLPSAGPRPQEDLDNFQKMVEY 128 Query: 123 VRSIV-SSEKKYRTIEEECMVE 143 + E + E + E Sbjct: 129 WARLRDKLEDDKISETEYYLKE 150 >gi|291522416|emb|CBK80709.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 114 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/106 (11%), Positives = 36/106 (33%), Gaps = 6/106 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+ + Q++L + + ++ V ++ + + I++ + Sbjct: 1 MTIGERVFFLLDKYAIQQKELADAINVSKATVNGWKTRKGSPSSDLIVPIAKFFHVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS------TPDGLQLNRYFIQIDD 112 S +S E+ ++ + R + I D Sbjct: 61 LLTGSEAESRILSLEDEEWLNIVHQIPEDRQAMCKDFLRTHMVIPD 106 >gi|229016024|ref|ZP_04172980.1| Transcriptional regulator [Bacillus cereus AH1273] gi|229022243|ref|ZP_04178788.1| Transcriptional regulator [Bacillus cereus AH1272] gi|228739046|gb|EEL89497.1| Transcriptional regulator [Bacillus cereus AH1272] gi|228745257|gb|EEL95303.1| Transcriptional regulator [Bacillus cereus AH1273] Length = 66 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R+ L ++Q++L E +G+T Q + EKG I + ++ F Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVNKTLNDLFWE 63 Query: 77 SPT 79 Sbjct: 64 EEE 66 >gi|229160744|ref|ZP_04288736.1| Transcriptional regulator, Xre [Bacillus cereus R309803] gi|228622759|gb|EEK79593.1| Transcriptional regulator, Xre [Bacillus cereus R309803] Length = 405 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I++ LE +SF Sbjct: 5 LGEKIKALRKEKKLTQTELS-GSELTKSMLSQIENGKATPSMKTLQYIADKLECEMSFLL 63 Query: 75 DVSPTVCSDISSEEN 89 + ++ + Sbjct: 64 EDDDEEIVELIQQTE 78 >gi|282600636|ref|ZP_05979286.2| transcriptional regulator, Cro/CI family [Subdoligranulum variabile DSM 15176] gi|282571663|gb|EFB77198.1| transcriptional regulator, Cro/CI family [Subdoligranulum variabile DSM 15176] Length = 120 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 36/77 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G+++R R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 3 MPIDDLTALGQKMREARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRALAKVL 62 Query: 67 ESPISFFFDVSPTVCSD 83 + + ++ + Sbjct: 63 HISLDTLINPDISLEDE 79 >gi|255655392|ref|ZP_05400801.1| putative phage regulatory protein [Clostridium difficile QCD-23m63] gi|296451380|ref|ZP_06893118.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296880270|ref|ZP_06904235.1| probable phage regulatory protein [Clostridium difficile NAP07] gi|296259796|gb|EFH06653.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296428713|gb|EFH14595.1| probable phage regulatory protein [Clostridium difficile NAP07] Length = 132 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 18/130 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R ++Q KL + L + KYE G + + I++ + Sbjct: 4 LGKRIAYLRNSKKLTQRKLMDILKFEN--LGKYETGDRKPNCDIVMSIADYFNVTTDWLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 V S+ S +E+ ++ I++ ++ I+ L R + +K Sbjct: 62 YGKEKVNSNNSVKEDK--------------EDYLHINNDEM--TILNLYRQLNERDKIKI 105 Query: 135 TIEEECMVEQ 144 E + + Sbjct: 106 EGILELKISE 115 >gi|182418942|ref|ZP_02950199.1| transcriptional regulator, XRE family [Clostridium butyricum 5521] gi|237667576|ref|ZP_04527560.1| transcriptional regulator, XRE family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377225|gb|EDT74793.1| transcriptional regulator, XRE family [Clostridium butyricum 5521] gi|237655924|gb|EEP53480.1| transcriptional regulator, XRE family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 92 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 21/56 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R + + QE + + L + +E G L ++ + + + Sbjct: 5 RLKYLRNEIELKQEDIADKLNVARSTYGNWELGRTEPDIKALIKLARFYKVSLDYL 60 >gi|162146218|ref|YP_001600677.1| transcriptional regulatory protein [Gluconacetobacter diazotrophicus PAl 5] gi|161784793|emb|CAP54335.1| putative transcriptional regulatory protein [Gluconacetobacter diazotrophicus PAl 5] Length = 83 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R G+SQE L E +G+ + E G L H S+ L + D Sbjct: 8 GANVRRLRRAAGLSQEALAERMGVDRAYISWIETGRQNATLLSLWHASQALGVRPATLLD 67 Query: 76 VSPTVCSDISS 86 S ++ + Sbjct: 68 ESHVAATEEAP 78 >gi|163746908|ref|ZP_02154265.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161380022|gb|EDQ04434.1| probable transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 205 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 23/76 (30%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R ++ L G+ + K E G ++ +++ L+ I Sbjct: 6 ALGARLRHLRKSRKLTLSALASLSGVAVSTISKIENGALSPTLDKVLRLADGLDLSIGQL 65 Query: 74 FDVSPTVCSDISSEEN 89 Sbjct: 66 IGEEQIDDHKSQPNSR 81 >gi|158425505|ref|YP_001526797.1| putative HTH-type transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158332394|dbj|BAF89879.1| putative HTH-type transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 72 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ R G++QE + G + Q + E+G L +++ L Sbjct: 7 VGRNFARLRQEKGLTQEDVQTRSGFSQQYISGLERGRRNPTVITLYELAQALGVSHEEL 65 >gi|124010294|ref|ZP_01694946.1| cryptic phage CTXphi transcriptional repressor RstR [Microscilla marina ATCC 23134] gi|123983628|gb|EAY24073.1| cryptic phage CTXphi transcriptional repressor RstR [Microscilla marina ATCC 23134] Length = 121 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 11/128 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +I+ R +SQ+++ L + Q K EKG + L+ I + L ++ Sbjct: 1 MEIGDKIKKVREAKKLSQKEVALTLNMDQSQYSKIEKGKTDPTTATLEKICKALNIEVAE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F S++ ++ Q+ D +Q I +++ S++ ++ Sbjct: 61 LF----------VSDQLFKNVDSLDKSLVEKVHLLEQL-DESEKQSIFQIIDSLIIKKRL 109 Query: 133 YRTIEEEC 140 T+ + Sbjct: 110 KDTLNDAI 117 >gi|94968170|ref|YP_590218.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550220|gb|ABF40144.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 74 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K + + + VGKRIR R+ G +Q + L I + E+G G LQ Sbjct: 1 MSSDK---HALLLAVGKRIRALRIQKGWTQTDMAVYLDINRGHISDIERGKREAGLITLQ 57 Query: 61 HISEVLESPISFFFDV 76 I+ L++ ++ Sbjct: 58 IIARGLDTTMARLLKG 73 >gi|29171513|ref|NP_808697.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28856006|gb|AAO59063.1| transcriptional regulator, PbsX family [Pseudomonas syringae pv. tomato str. DC3000] Length = 111 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 38/98 (38%), Gaps = 4/98 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +I+ R +SQ L E +G V +YE+G G +L I+ V Sbjct: 1 MVGAKIKALRKSTTLSQADLAEMIGCDAPLVSRYERGSTLPGIEQLIRIATVFNVAPGEL 60 Query: 74 F----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 DV T + E + + +P+ L+ F Sbjct: 61 LPGGQDVLRTRLLSLRQEITERIAEVDSPEYLEEMLNF 98 >gi|324328969|gb|ADY24229.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 69 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 1 MKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEE 60 Query: 73 FFDVSPTVC 81 F++ Sbjct: 61 IFELVEGEE 69 >gi|295112179|emb|CBL28929.1| Predicted transcriptional regulators [Synergistetes bacterium SGP1] Length = 155 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R++ R + G+SQ L + +G+ + ++E G + A +Q +++ L++ ++ Sbjct: 1 MKISDRVKTLRDLRGLSQGDLAQIIGVDVNTIWRWENGRSSP-ARSIQKLAQALDTTTAY 59 Query: 73 FFDVSPTVC 81 + Sbjct: 60 LLGETDNPK 68 >gi|257440134|ref|ZP_05615889.1| transcriptional regulator, AraC family [Faecalibacterium prausnitzii A2-165] gi|257197486|gb|EEU95770.1| transcriptional regulator, AraC family [Faecalibacterium prausnitzii A2-165] Length = 109 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 20/125 (16%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK ++I +G I++ R G +Q+ L E LG+T + E+G + + LQ Sbjct: 1 MREKK---DINIEIGGNIQVAREQAGYTQDTLSEMLGMTPNHLSAIERGASGISLEALQR 57 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + +L + ++ L L R I + RQ++ E Sbjct: 58 LCRLLGISADRIIFGTDEPEAEA----------------LALARRISDIK-PEYRQQVQE 100 Query: 122 LVRSI 126 L+ +I Sbjct: 101 LLSAI 105 >gi|227505314|ref|ZP_03935363.1| HTH_3 family transcriptional regulator [Corynebacterium striatum ATCC 6940] gi|227198016|gb|EEI78064.1| HTH_3 family transcriptional regulator [Corynebacterium striatum ATCC 6940] Length = 86 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK +P+ R+RL R+ MS+ +L + +G+ Q + E+G + Sbjct: 1 MSPKKKPSSPIF----NRVRLLRVERDMSRAQLADAVGVNPQSIGALERGDHSPSLDLAF 56 Query: 61 HISEVLESPISFFFDVSP 78 I EV + P+ F + Sbjct: 57 SICEVFDLPVEAVFSRTE 74 >gi|194397893|ref|YP_002038537.1| transcriptional activator [Streptococcus pneumoniae G54] gi|194357560|gb|ACF56008.1| transcriptional activator, putative [Streptococcus pneumoniae G54] Length = 287 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 2/97 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + S++S+ + + + L Y +I+ Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYEDL-EYIYRIE 98 >gi|167896507|ref|ZP_02483909.1| DNA-binding protein [Burkholderia pseudomallei 7894] Length = 202 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 30/89 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 25 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 + +++ QL Sbjct: 85 AQPKAPETIRVDGPHDIPTLAGHDAQYQL 113 >gi|157734756|dbj|BAF80762.1| prophage repressor [Enterobacteria phage P22] Length = 216 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +S+ L+ + Sbjct: 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGESLLALSKALQCSPDYLLK 66 Query: 76 VSPTVCSDISSEENNV 91 + + + Sbjct: 67 GDLSQTNVAYHSRHEP 82 >gi|121609979|ref|YP_997786.1| XRE family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121554619|gb|ABM58768.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae EF01-2] Length = 208 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R+ G++ ++ E GI+ + K E G G L I+ L +S F Sbjct: 24 VGAAIRELRLREGLTIAQVSEQAGISRGMLSKIETGSTMAGLDTLARIARTLGVAMSALF 83 Query: 75 DVSPTVCS 82 + Sbjct: 84 GKYDASAA 91 >gi|18249874|ref|NP_543062.1| hypothetical protein P27p10 [Enterobacteria phage phiP27] gi|18152341|emb|CAC83528.1| hypothetical protein [Enterobacteria phage phiP27] Length = 138 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + R+R +R G++ +L L + + + ++E G S L ++ +L Sbjct: 65 NSAINNRLRTQREACGLTTAELAMLLDLDEEIIIQWESGDYEPTISMLIPLANILGCDPM 124 Query: 72 FFFDVSPTVCS 82 + PT Sbjct: 125 WLLTGKPTGGD 135 >gi|16800500|ref|NP_470768.1| hypothetical protein lin1432 [Listeria innocua Clip11262] gi|16413905|emb|CAC96663.1| lin1432 [Listeria innocua Clip11262] gi|313619010|gb|EFR90838.1| DNA-binding domain-containing protein [Listeria innocua FSL S4-378] gi|313623828|gb|EFR93953.1| DNA-binding domain-containing protein [Listeria innocua FSL J1-023] Length = 311 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 6/116 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G +++ R G+S + L + I + + E+G V + +E + Sbjct: 3 ELGDKLKQARREKGLSLDDLQQITKIQKRYLIAIEEGNYAVMPGKFYARAFIKQYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + FD + + +E + + R + +++ Sbjct: 63 LDSATLFDEFESEVPETPQQEVVNNEPTRVQSKRNPMPAQSVGNQANSRNRFFDIL 118 >gi|113971256|ref|YP_735049.1| XRE family transcriptional regulator [Shewanella sp. MR-4] gi|114048494|ref|YP_739044.1| XRE family transcriptional regulator [Shewanella sp. MR-7] gi|117921538|ref|YP_870730.1| XRE family transcriptional regulator [Shewanella sp. ANA-3] gi|113885940|gb|ABI39992.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. MR-4] gi|113889936|gb|ABI43987.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. MR-7] gi|117613870|gb|ABK49324.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. ANA-3] Length = 208 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 2/95 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++++G +R R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 26 NLDIGASLRTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLV 85 Query: 72 FFF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + S + + ++D + P +L Sbjct: 86 DFFSIEASIESEQKVVYRSDELLDIGTGPLEFKLI 120 >gi|325289095|ref|YP_004265276.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964496|gb|ADY55275.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 272 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 31/77 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I R + G +QE+L + L + Q + K+E G + S L ++ L + I+ Sbjct: 6 QNISKYRKMRGFTQEELAQKLNRSSQAISKWETGQSSPDISLLPDLAFALGTDINSLMGY 65 Query: 77 SPTVCSDISSEENNVMD 93 E+ + Sbjct: 66 VYDKKKITIYEDEYRQE 82 >gi|322390596|ref|ZP_08064111.1| DNA-binding protein [Streptococcus parasanguinis ATCC 903] gi|321142675|gb|EFX38138.1| DNA-binding protein [Streptococcus parasanguinis ATCC 903] Length = 296 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +GK++R R GM++E L + +T +Q+ + EKG + +L++I+ +L+ Sbjct: 3 DIKSEIGKKLRRLREEKGMTREVLCNDESELTVRQLVRIEKGESLPSLKKLEYIANMLDI 62 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV-RSIV 127 P+S D V E ++ T + R D I E + Sbjct: 63 PVSNIVDHDKAVLPRRYLELKFLVTHFMTYGDEERIRLKESYFDE-----IYESYFEDLP 117 Query: 128 SSEKKYRTIEEECM 141 E+ + + Sbjct: 118 EEEQVAIEAVDAAL 131 >gi|313635327|gb|EFS01613.1| transcriptional regulator, putative [Listeria seeligeri FSL N1-067] gi|313640009|gb|EFS04664.1| transcriptional regulator, putative [Listeria seeligeri FSL S4-171] Length = 170 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 51/129 (39%), Gaps = 13/129 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK ++ R+ LG +Q++ + L I Q K E+G+ +L I L + Sbjct: 11 IGKNLKAYRLELGATQKEFADELNINHQNYSKMERGIYTPSLEKLLEICNSLRITPNDLL 70 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + I L L R +++++ +++ + + + Sbjct: 71 LDNREYDEYKQEIFRELDEDI-----LDLMREMKVVEEIR--------AKALKAKREGNK 117 Query: 135 TIEEECMVE 143 +EE+ + + Sbjct: 118 KLEEQYLAD 126 >gi|299138223|ref|ZP_07031402.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] gi|298599469|gb|EFI55628.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX8] Length = 64 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R+ R G SQ L + L ++ Q V E G I+ + + I F+ Sbjct: 3 NRLRVLRAEKGWSQADLADRLEVSRQSVNAIETGKYDPSLPLAFRIARLFDQRIEEIFED 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|260597879|ref|YP_003210450.1| hypothetical protein CTU_20870 [Cronobacter turicensis z3032] gi|260217056|emb|CBA30782.1| hypothetical protein CTU_20870 [Cronobacter turicensis z3032] Length = 191 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 39/94 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ +G+RIR+ R G S +L E G++ + K E+G + A+ L +S L Sbjct: 6 DTLNQRIGERIRVERETRGWSLSELAERAGVSRAMIHKIERGESSPTATLLGRLSGALGL 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 +S + + + + L+ Sbjct: 66 SMSTLIARAEMNEGRLLRFADQPVWRDPQSHYLR 99 >gi|224148667|ref|XP_002336695.1| predicted protein [Populus trichocarpa] gi|222836536|gb|EEE74943.1| predicted protein [Populus trichocarpa] Length = 63 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 23/58 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 IR R G SQ L + LG++ Q V E G I+ V E+ I F Sbjct: 5 IRELRAERGWSQAALADLLGVSRQTVNAIETGRYDPSLPLAFAIARVFETRIEAIFQE 62 >gi|254441331|ref|ZP_05054824.1| Helix-turn-helix domain protein [Octadecabacter antarcticus 307] gi|198251409|gb|EDY75724.1| Helix-turn-helix domain protein [Octadecabacter antarcticus 307] Length = 131 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 41/100 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R + ++Q++L + +GI ++ +E+ ++ A+RL + +L + + Sbjct: 19 GDRLAAARDVAQLTQKELAQRVGIKTSTLRNWEEDLSEPRANRLSILCGILGVSLRWLLT 78 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + D + L+ R ++ ++ Sbjct: 79 AEGEGLLAPDEDAPIAPDVSAMLTELRAVRAQMKQSTERL 118 >gi|206564610|ref|YP_002235373.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198040650|emb|CAR56636.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 180 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 30/79 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L + G+T + K E+G++ + +S+ L + F S Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNVDVEQLFSES 63 Query: 78 PTVCSDISSEENNVMDFIS 96 + + Sbjct: 64 RNRELITVTRAGERTAMGA 82 >gi|148994781|ref|ZP_01823852.1| hypothetical protein CGSSp9BS68_01273 [Streptococcus pneumoniae SP9-BS68] gi|149003970|ref|ZP_01828778.1| hypothetical protein CGSSp14BS69_02881 [Streptococcus pneumoniae SP14-BS69] gi|149013158|ref|ZP_01833975.1| hypothetical protein CGSSp19BS75_12238 [Streptococcus pneumoniae SP19-BS75] gi|168483136|ref|ZP_02708088.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|168488904|ref|ZP_02713103.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|182684188|ref|YP_001835935.1| hypothetical protein SPCG_1218 [Streptococcus pneumoniae CGSP14] gi|225858850|ref|YP_002740360.1| hypothetical protein SP70585_1105 [Streptococcus pneumoniae 70585] gi|237650039|ref|ZP_04524291.1| hypothetical protein SpneC1_04825 [Streptococcus pneumoniae CCRI 1974] gi|237821750|ref|ZP_04597595.1| hypothetical protein SpneC19_05472 [Streptococcus pneumoniae CCRI 1974M2] gi|303256100|ref|ZP_07342120.1| hypothetical protein CGSSpBS455_11370 [Streptococcus pneumoniae BS455] gi|303260599|ref|ZP_07346564.1| hypothetical protein CGSSp9vBS293_01687 [Streptococcus pneumoniae SP-BS293] gi|303263011|ref|ZP_07348944.1| hypothetical protein CGSSp14BS292_06339 [Streptococcus pneumoniae SP14-BS292] gi|303264859|ref|ZP_07350775.1| hypothetical protein CGSSpBS397_01811 [Streptococcus pneumoniae BS397] gi|303266922|ref|ZP_07352799.1| hypothetical protein CGSSpBS457_08599 [Streptococcus pneumoniae BS457] gi|303269104|ref|ZP_07354884.1| hypothetical protein CGSSpBS458_06524 [Streptococcus pneumoniae BS458] gi|147758029|gb|EDK65035.1| hypothetical protein CGSSp14BS69_02881 [Streptococcus pneumoniae SP14-BS69] gi|147763009|gb|EDK69953.1| hypothetical protein CGSSp19BS75_12238 [Streptococcus pneumoniae SP19-BS75] gi|147927047|gb|EDK78089.1| hypothetical protein CGSSp9BS68_01273 [Streptococcus pneumoniae SP9-BS68] gi|172043442|gb|EDT51488.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|182629522|gb|ACB90470.1| hypothetical protein SPCG_1218 [Streptococcus pneumoniae CGSP14] gi|183572348|gb|EDT92876.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|225721783|gb|ACO17637.1| conserved domain protein [Streptococcus pneumoniae 70585] gi|302596947|gb|EFL64073.1| hypothetical protein CGSSpBS455_11370 [Streptococcus pneumoniae BS455] gi|302635838|gb|EFL66340.1| hypothetical protein CGSSp14BS292_06339 [Streptococcus pneumoniae SP14-BS292] gi|302638249|gb|EFL68719.1| hypothetical protein CGSSpBS293_01687 [Streptococcus pneumoniae SP-BS293] gi|302641353|gb|EFL71720.1| hypothetical protein CGSSpBS458_06524 [Streptococcus pneumoniae BS458] gi|302643555|gb|EFL73825.1| hypothetical protein CGSSpBS457_08599 [Streptococcus pneumoniae BS457] gi|302645547|gb|EFL75778.1| hypothetical protein CGSSpBS397_01811 [Streptococcus pneumoniae BS397] gi|332073420|gb|EGI83899.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] gi|332201543|gb|EGJ15613.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] Length = 67 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 27/61 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +SQ ++ + L + + E G + S L+ ++++ + + ++ Sbjct: 4 RLKNLREDKDLSQCQIAQYLHCSQSAYSRIESGKQDIPTSFLKQLAKLYQVTTDYILEMD 63 Query: 78 P 78 Sbjct: 64 K 64 >gi|146341324|ref|YP_001206372.1| putative HTH-type transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146194130|emb|CAL78149.1| putative HTH-type transcriptional regulator [Bradyrhizobium sp. ORS278] Length = 184 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 34/84 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G R+R R+ GM L + +G + K E G L + L+ ++ Sbjct: 1 MNIGPRLRRARLSKGMRMRDLAQIVGCDESMISKIEAGKVMPSLPMLDKMVHALDRDMAS 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 FF + + E+ + ++ Sbjct: 61 FFGLRVDDYKQVQKPEDRMKVYVD 84 >gi|118477924|ref|YP_895075.1| transcriptional regulator, DNA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|118417149|gb|ABK85568.1| transcriptional regulator, DNA-binding protein [Bacillus thuringiensis str. Al Hakam] Length = 69 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R G +QE+L + +G++ Q + EK I+ V E I+ FD Sbjct: 7 NRIVVYRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSITDVFDY 66 Query: 77 SPT 79 Sbjct: 67 QEE 69 >gi|126699832|ref|YP_001088729.1| putative regulatory protein [Clostridium difficile 630] gi|254975815|ref|ZP_05272287.1| putative regulatory protein [Clostridium difficile QCD-66c26] gi|255101355|ref|ZP_05330332.1| putative regulatory protein [Clostridium difficile QCD-63q42] gi|255307231|ref|ZP_05351402.1| putative regulatory protein [Clostridium difficile ATCC 43255] gi|255314944|ref|ZP_05356527.1| putative regulatory protein [Clostridium difficile QCD-76w55] gi|255517618|ref|ZP_05385294.1| putative regulatory protein [Clostridium difficile QCD-97b34] gi|255650729|ref|ZP_05397631.1| putative regulatory protein [Clostridium difficile QCD-37x79] gi|260683815|ref|YP_003215100.1| putative regulatory protein [Clostridium difficile CD196] gi|260687475|ref|YP_003218609.1| putative regulatory protein [Clostridium difficile R20291] gi|306520644|ref|ZP_07406991.1| putative regulatory protein [Clostridium difficile QCD-32g58] gi|115251269|emb|CAJ69100.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260209978|emb|CBA63987.1| putative regulatory protein [Clostridium difficile CD196] gi|260213492|emb|CBE05196.1| putative regulatory protein [Clostridium difficile R20291] Length = 105 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 26/91 (28%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKR++ R ++ ++ +G++ + + E G +L Sbjct: 3 YIGKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVNILNISADVL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + N L L Sbjct: 63 IKDITSTGKTYLENDINEELKDLNSRELNLI 93 >gi|31747743|gb|AAO38363.1| Lfe164p1 [Leptospirillum ferrooxidans] Length = 85 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+R+ R G+S +LG +G+T ++KYE ++ L +S L + Sbjct: 5 IMIGQRLYRARKAAGLSLRELGSRIGLTHAAIKKYEDEQVTPTSATLLKLSRALNVRTEY 64 Query: 73 FF 74 FF Sbjct: 65 FF 66 >gi|49081786|gb|AAT50293.1| PA1884 [synthetic construct] Length = 184 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 30/84 (35%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + +R+ R ++ +L E ++ + + E+ + AS L ++ L Sbjct: 2 DIDELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVA 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMD 93 +S + + + Sbjct: 62 LSELLGDAQAPAEPLCRRAQQEVW 85 >gi|116628702|ref|YP_813874.1| transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|300362660|ref|ZP_07058836.1| transcriptional regulator [Lactobacillus gasseri JV-V03] gi|116094284|gb|ABJ59436.1| Predicted transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|300353651|gb|EFJ69523.1| transcriptional regulator [Lactobacillus gasseri JV-V03] Length = 70 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 23/62 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G+SQ L + + + Q + E ++ L++ ++ F Sbjct: 8 NRVKEYRKQKGLSQMALAKRIDVARQTINLIENDKYNPSLDLCLKLAHELDTDLNTLFWD 67 Query: 77 SP 78 Sbjct: 68 GD 69 >gi|331086098|ref|ZP_08335181.1| hypothetical protein HMPREF0987_01484 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407021|gb|EGG86526.1| hypothetical protein HMPREF0987_01484 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 110 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/116 (11%), Positives = 42/116 (36%), Gaps = 12/116 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+G ++ R +Q+++ E GI + + YE V + ++ + + Sbjct: 2 KNIGLTLKNARENKDYTQKRVMELTGINRKSLSGYENNVAEPDLNTFATLARLYDLSADD 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 ++ P + ++ F + + + R+ +++ + ++ Sbjct: 62 VLEIKPG-----------HASLSLSRLETRMLLVFHSLPEERQREFLVQ-IEALSK 105 >gi|326575959|gb|EGE25882.1| peptidase S24-like protein [Moraxella catarrhalis CO72] Length = 233 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 10/93 (10%), Positives = 29/93 (31%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R++ R G++Q+++ E + Q + +R ++ + + + Sbjct: 1 MELKDRLKYARKAKGLTQKQVTEQIKGLSQSAYSQLESGKSKSTTRAIELAHLFGVDVHW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + + STP Sbjct: 61 LISGEGEMTKNNYKLAPITEWDDSTPLDDDEAE 93 >gi|325847068|ref|ZP_08169894.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481040|gb|EGC84085.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 132 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 54/129 (41%), Gaps = 5/129 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFFF 74 G ++R R ++Q++L + +G++ + + +YE G ++ ++ ++EVL++ + Sbjct: 4 GTKLRQLRESKNLTQDQLAKLVGVSLKTISRYEMGESKPRYRKVYDKLAEVLDTSHDYLV 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVRS---IVSSE 130 D + + + + D K ++ I++ ++ I ++ Sbjct: 64 TDEDNFILDAREKYGYKGAKDAKEMVDGVIGLMAGGEIDEKDKKAILDSIQEAYYIAKNK 123 Query: 131 KKYRTIEEE 139 K ++ Sbjct: 124 NKKYNPHKD 132 >gi|315648066|ref|ZP_07901167.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315276712|gb|EFU40055.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 319 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 6/104 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G+++R R+ GMS + + E I + ++ E G +V +E + Sbjct: 3 ELGQQLREARLQKGMSLDDVQEMTKIRKRYLEAIEAGDYKVLPGSFYVRAFIKTYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + E R + Sbjct: 63 IDPDELLEGHKQDVPKSEPEATMEPVIQKRASRPSAERNMKWLP 106 >gi|293400018|ref|ZP_06644164.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306418|gb|EFE47661.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 108 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G+RIR R M+ ++L + +G + Q +Q+YE G +N + + +++ I+ +L + +F Sbjct: 4 IGERIRTARKKQNMTLDELAKKVGTSKQTIQRYETGIINNIPSDKIKAIAAILCTTPAFL 63 Query: 74 FDVSPTVCSDISSEENNVMD 93 + S + + D Sbjct: 64 TGWTEKSPITTLSNIDLLND 83 >gi|307729113|ref|YP_003906337.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307583648|gb|ADN57046.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia sp. CCGE1003] Length = 330 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 3/124 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ I Sbjct: 32 GEREERDPFLTAMGERVRLLRARRGMTRKTLAAETGLSERHLANLESGVGNASVLVLRQI 91 Query: 63 SEVLESPISFFFDVSPTVCSD---ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + L P++ T ++ I + + L F Q R+ Sbjct: 92 AATLNCPLAEVIGDETTASAEWLLIRELLHGRDQAALQRARMTLAEMFAQAPRDPHRKDR 151 Query: 120 IELV 123 I L+ Sbjct: 152 IALI 155 >gi|269139111|ref|YP_003295812.1| predicted transcriptional regulator [Edwardsiella tarda EIB202] gi|267984772|gb|ACY84601.1| predicted transcriptional regulator [Edwardsiella tarda EIB202] Length = 194 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/100 (15%), Positives = 37/100 (37%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + VD ++ + + R G + +L + G++ + K E+G + A+ L Sbjct: 1 MDKTSKNQIVDSDIARLLLKHRKTRGWTVAELAQRSGVSQAMISKVERGTSSPSATILSR 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ + +S FF + + + G+ Sbjct: 61 LASAMNITLSTFFAELEQHQNSRVRFAHQQQHWTDEQSGI 100 >gi|261213196|ref|ZP_05927479.1| putative transcriptional regulator [Vibrio sp. RC341] gi|260837614|gb|EEX64308.1| putative transcriptional regulator [Vibrio sp. RC341] Length = 105 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ+ LG +G+ + +YEKG + L+ +++ L P+S+F Sbjct: 10 RLKEARKKAKLSQKALGVRIGMDESSASPRMNQYEKGKHTPDVQTLKLLADELGVPLSYF 69 Query: 74 FDVSPTVCS 82 F Sbjct: 70 FCEDEISAE 78 >gi|229491001|ref|ZP_04384834.1| regulatory protein [Rhodococcus erythropolis SK121] gi|229322117|gb|EEN87905.1| regulatory protein [Rhodococcus erythropolis SK121] Length = 194 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 3/106 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R M+ L E I+ + + E G R L I++ P+ Sbjct: 13 IGPRLRALRQQSEMTLADLSEATDISVSTLSRLESGTRRANLELLLPIAKAHGVPLDDLV 72 Query: 75 DV---SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + P V + + + +++ G I R+ Sbjct: 73 NSKIKDPRVREEPRTVGCMTVIPLTSQPGNLQAYKMIISPTDDDRE 118 >gi|229548807|ref|ZP_04437532.1| Cro/CI family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|229306036|gb|EEN72032.1| Cro/CI family transcriptional regulator [Enterococcus faecalis ATCC 29200] Length = 101 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I + R + M+Q+ L +G++ Q + + E+ I+ V I F Sbjct: 32 IHVYRAMARMTQQDLANRIGVSRQTIIQLERNKYNPSLLLAHDIANVFGVTIDDVFTFKE 91 Query: 79 TVCSDISSEE 88 T+ D+ E Sbjct: 92 TLNDDVEQEA 101 >gi|229082772|ref|ZP_04215209.1| hypothetical protein bcere0023_53730 [Bacillus cereus Rock4-2] gi|228700527|gb|EEL53076.1| hypothetical protein bcere0023_53730 [Bacillus cereus Rock4-2] Length = 144 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/86 (16%), Positives = 31/86 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++Q+ L + + T + YE G + L+ ++ VL + Sbjct: 4 QRLKEMRKTRKLTQQGLADKVNTTKGTISNYENGHSTPSNEMLKDLANVLGVTTDYLLGR 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 + + N D L+ Sbjct: 64 EDESRMSNALPDLNKKDTRDIARDLE 89 >gi|224498830|ref|ZP_03667179.1| transcriptional activator, putative [Listeria monocytogenes Finland 1988] Length = 300 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 11/113 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R+ G++Q+++ + I+ +EKG + + S + I + + P+ FF Sbjct: 5 GELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFF- 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY--------FIQIDDVKVRQKII 120 + +++ +DF+ + + + +VR+ I+ Sbjct: 63 -FIYRDFSSTEDDSFWIDFVELSGKNDVVGMQALLDKITLERTEQTEVRKAIL 114 >gi|170699355|ref|ZP_02890402.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|170135727|gb|EDT04008.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] Length = 203 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P I + + + ++ DG R + ID Sbjct: 86 S-QPKAAETIRVDGPHDIPTLAGHDGRYQLRVWGPID 121 >gi|168177975|ref|ZP_02612639.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|182671147|gb|EDT83121.1| DNA-binding protein [Clostridium botulinum NCTC 2916] Length = 130 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 1/94 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FD 75 ++ R G+SQ++LG L ++ Q + K+E G +L + + E + D Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDELVMD 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 V + N + I + + + + Sbjct: 65 VKAKESTKTEPLVMNRFETIIDSIDRENVKMYTK 98 >gi|241664279|ref|YP_002982639.1| XRE family transcriptional regulator [Ralstonia pickettii 12D] gi|240866306|gb|ACS63967.1| transcriptional regulator, XRE family [Ralstonia pickettii 12D] Length = 117 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 50/109 (45%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V +GK I RM ++QE+L E LG+ + + ++E+G RL +++V P Sbjct: 9 AVANRLGKAIARERMARELTQEQLAELLGVEQETISRFERGSTLPPLPRLIQLADVFNVP 68 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + + +D + + + ++ + + R+ ++ + R++ Sbjct: 69 LESLLRTTTGRPADEAVDISKMLAKLDGDGRDFVRRWVTEMCEKLARKR 117 >gi|77461744|ref|YP_351251.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77385747|gb|ABA77260.1| putative DNA-binding protein [Pseudomonas fluorescens Pf0-1] Length = 182 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 2/94 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG+R++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDVGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLGGIPMSMVE 60 Query: 73 FF--DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF ++ + I + N ++D ++L Sbjct: 61 FFSEEILQEKPTQIVYKANELIDISDGAVTMKLV 94 >gi|56961997|ref|YP_173719.1| transcriptional regulator [Bacillus clausii KSM-K16] gi|56908231|dbj|BAD62758.1| transcriptional regulator [Bacillus clausii KSM-K16] Length = 63 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R LG++Q +L + + ++ Q + EK +++ L + F Sbjct: 3 NRVKQARRDLGLTQGELADKVNVSRQTIGLIEKNHYNPSLKLCIALAKALNKTLDQLF 60 >gi|83956173|ref|ZP_00964626.1| subunit S of type I restriction-modification system [Sulfitobacter sp. NAS-14.1] gi|83839559|gb|EAP78739.1| subunit S of type I restriction-modification system [Sulfitobacter sp. NAS-14.1] Length = 164 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 23/66 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG I+ R G+SQE L + + K E N ++ I+ L S+ Sbjct: 6 QVGLNIQKLRRERGISQEDLALMAKVNRGYMGKLENAKNSASLDMVERIATALNVVPSWL 65 Query: 74 FDVSPT 79 Sbjct: 66 LVGDEP 71 >gi|330974510|gb|EGH74576.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 189 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 1/109 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M PV +V + +R R +SQ L E G++ + + E G V + L Sbjct: 1 MHKENSQRPPVLQHVSQNVRRLRNCADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLD 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++E LE S +P E I+ + L R + Sbjct: 61 RVAEALEVAFSDLIQ-APENRDYSRINELAWAGTIAGSKAVLLARAVAR 108 >gi|319651012|ref|ZP_08005147.1| hypothetical protein HMPREF1013_01756 [Bacillus sp. 2_A_57_CT2] gi|317397368|gb|EFV78071.1| hypothetical protein HMPREF1013_01756 [Bacillus sp. 2_A_57_CT2] Length = 149 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDIS 85 G SQE L E L ++ Q V K+E G N + +S++ I + + Sbjct: 14 KGWSQEDLAEKLFVSRQSVSKWENGQNYPSIEIIIKLSDLFGVTIDELLRSDEELTEKVI 73 Query: 86 SEENNVMDF 94 + + Sbjct: 74 KDSRQLAYP 82 >gi|302335716|ref|YP_003800923.1| transcriptional regulator [Olsenella uli DSM 7084] gi|301319556|gb|ADK68043.1| transcriptional regulator [Olsenella uli DSM 7084] Length = 73 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI R ++Q +L +G+T Q + E G IS I FD S Sbjct: 4 RIPELRKDRKITQAELALAVGVTRQTITSIEVGKYTASLVLAYRISRYFGLTIEDVFDFS 63 Query: 78 P 78 Sbjct: 64 D 64 >gi|300933872|ref|ZP_07149128.1| hypothetical protein CresD4_07355 [Corynebacterium resistens DSM 45100] Length = 294 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 18/117 (15%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+R+R R+ G+SQ L E + + + ++E GV+ + ++ L +S Sbjct: 10 EFGRRLRHARLDRGLSQNALAEGI-CSASAISRWEAGVHLPPEDAIWSLANRLGIDVSVL 68 Query: 74 --------FDVSPTVCSDISSEENNVMDFIST---------PDGLQLNRYFIQIDDV 113 F SP +++ S + LQL R + D Sbjct: 69 TGLGFDTRFAESPDRFAEVVSAGVEDCSTFDDCSTAPRSPIANWLQLARSLLNCVDP 125 >gi|291522925|emb|CBK81218.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 139 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFF 74 G+++R R MSQ++L +G++++ ++ +E + L +++ L+ +S+ Sbjct: 4 GEKVRSLRKEKKMSQQELASMVGVSYRTIRSWEVEGRFPKQNVLYQKLADALQCDVSYLM 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + ++ S + N + Q F Sbjct: 64 SENEAFITEASEQFGNRGAKQAQQILEQAAAMFA 97 >gi|258623173|ref|ZP_05718182.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM573] gi|258625497|ref|ZP_05720389.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM603] gi|258582203|gb|EEW07060.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM603] gi|258584471|gb|EEW09211.1| transcriptional regulator, HTH_3 family [Vibrio mimicus VM573] Length = 223 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 44 LGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDMPQLF 103 Query: 75 D 75 + Sbjct: 104 E 104 >gi|228960181|ref|ZP_04121838.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799449|gb|EEM46409.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 114 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 30/80 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R ++Q + GE + ++ QV E N+ L I+ L + Sbjct: 5 GENLKKFRASRSLTQSEFGEKVQLSRSQVGNLEINYNQPDLDTLDRIATYLGVSVDALMG 64 Query: 76 VSPTVCSDISSEENNVMDFI 95 + T + + + + Sbjct: 65 RTSTPHEKNIANALDEIQTV 84 >gi|228962231|ref|ZP_04123669.1| hypothetical protein bthur0005_55850 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797460|gb|EEM44635.1| hypothetical protein bthur0005_55850 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 217 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 18/128 (14%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R + G+S++K+ E L + +E G S L +I+ + I+ + Sbjct: 105 ENLKRLRSLKGLSRKKIAEELNTPYSTYAGWENGFREPDISTLNNIASYYKVSINDLLN- 163 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 ++ + + + L +I + D EKK Sbjct: 164 ------PEAAVRDEDTLKLISRLSKNLFETYISVPDEHR-----------AELEKKLIAY 206 Query: 137 EEECMVEQ 144 E ++ Sbjct: 207 MNEFKSQK 214 Score = 37.9 bits (86), Expect = 0.42, Method: Composition-based stats. Identities = 18/129 (13%), Positives = 46/129 (35%), Gaps = 12/129 (9%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+ ++ R ++Q++L + I++ +E + L+ S + I Sbjct: 9 NTFLGQNLKYLRNSQKLTQKELASRIDISYYAYNNWENDLREPDLLSLKKFSIYYDLLID 68 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + I L + + + D +K ++ ++ +RS+ + Sbjct: 69 ELVNTQIISSDSIE----------IQNQKLDMIKKLEKKDVLKPLEENLKRLRSLKGLSR 118 Query: 132 KYRTIEEEC 140 K EE Sbjct: 119 KKIA--EEL 125 >gi|237731580|ref|ZP_04562061.1| conserved hypothetical protein [Citrobacter sp. 30_2] gi|226907119|gb|EEH93037.1| conserved hypothetical protein [Citrobacter sp. 30_2] Length = 191 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ + RIR+ R G S +L E G++ + K E+G + A+ L +S Sbjct: 6 DSINQRISARIRIERESRGWSLTELAERAGVSRAMIHKIERGESSPTATLLGRLSGAFGI 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 +S + + + + L+ Sbjct: 66 SMSTLIARAEMQEGKLLRFVDQPVWHDPQSHYLR 99 >gi|209519410|ref|ZP_03268207.1| transcriptional regulator, XRE family [Burkholderia sp. H160] gi|209500149|gb|EEA00208.1| transcriptional regulator, XRE family [Burkholderia sp. H160] Length = 212 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 24/60 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 35 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 94 >gi|164687400|ref|ZP_02211428.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM 16795] gi|164603174|gb|EDQ96639.1| hypothetical protein CLOBAR_01041 [Clostridium bartlettii DSM 16795] Length = 179 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 36/89 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I+ RM ++QE+L ++ + + E + + L I E+L + + Sbjct: 1 MDIGSKIKSMRMEKQLTQEELANRCELSKGFISQLENNLTSPSIATLIDILEILGTNLRE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 FF+ E+ + L Sbjct: 61 FFNEIDPERITFKKEDMFETEDEELKYHL 89 >gi|311747857|ref|ZP_07721642.1| toxin-antitoxin system, antitoxin component, Xre family [Algoriphagus sp. PR1] gi|126575850|gb|EAZ80160.1| toxin-antitoxin system, antitoxin component, Xre family [Algoriphagus sp. PR1] Length = 203 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 3/80 (3%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K+ N +G++++ R+ G SQ++L E G++ + VQ+ E ++ + Sbjct: 2 KTKMEN---KALGEKLKTLRLKNGFSQDELAESAGVSLRTVQRIENAEAVPRMDTIKRLF 58 Query: 64 EVLESPISFFFDVSPTVCSD 83 ++ D S T Sbjct: 59 QIFGMSPEEVLDWSQTEDKG 78 >gi|59714374|ref|YP_207148.1| DNA-binding protein RDGA [Vibrio fischeri ES114] gi|59482651|gb|AAW88260.1| DNA-binding protein RDGA [Vibrio fischeri ES114] Length = 203 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R++ +R L SQ KL + + +T + ++E+ L ++EVL + + Sbjct: 2 KEISIRLKEKRKALRYSQRKLADLVNVTTSAISQWEREETTPKGEHLVRLAEVLNCTVQW 61 Query: 73 FFDVSPT 79 Sbjct: 62 LVGTEDD 68 >gi|88801551|ref|ZP_01117079.1| transcriptional regulator, PBSX family protein [Polaribacter irgensii 23-P] gi|88782209|gb|EAR13386.1| transcriptional regulator, PBSX family protein [Polaribacter irgensii 23-P] Length = 64 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR+ R ++Q L E +G++ Q + E + ++ E + + FD Sbjct: 5 IRVERARHRLTQGDLAEKVGVSRQTIYAIENNKFNPSVTLAIKMARYFEVTVEYLFDSEE 64 >gi|87119803|ref|ZP_01075700.1| transcriptional regulator, putative [Marinomonas sp. MED121] gi|86165279|gb|EAQ66547.1| transcriptional regulator, putative [Marinomonas sp. MED121] Length = 184 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 30/71 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+R+ R G+SQ L + G+T + E S L+ I + ++ Sbjct: 1 MDIGERLLTIRRNKGLSQRDLAKRAGVTNSAISMIETNRVSPSVSSLEKILAGMGMSLTE 60 Query: 73 FFDVSPTVCSD 83 FF + D Sbjct: 61 FFSIKQKDKLD 71 >gi|331271170|ref|YP_004385879.1| hypothetical protein CbC4_6088 [Clostridium botulinum BKT015925] gi|329127665|gb|AEB77607.1| hypothetical protein CbC4_6088 [Clostridium botulinum BKT015925] Length = 121 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R +SQ++ G+ LGI + + ++E G + + L IS+V Sbjct: 5 QKIQKLRKAKKLSQKEFGKKLGIHDEIILQWESGTSYPSINELIKISDVFNITTDSLLKD 64 Query: 77 SPTVCSDI 84 + D Sbjct: 65 NINEYEDD 72 >gi|325263068|ref|ZP_08129803.1| transcriptional regulator, Cro/CI family [Clostridium sp. D5] gi|324031461|gb|EGB92741.1| transcriptional regulator, Cro/CI family [Clostridium sp. D5] Length = 122 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P V + +G+ +R R G++Q++L + G + +Q EKG L + L Sbjct: 1 MPEDVFVYLGQCLRDAREECGLTQQELADQTGRGLRHLQDIEKGRKNPSYDVLASFIKRL 60 Query: 67 ESPISFFFDVSPTVCS 82 + F + Sbjct: 61 GISANELFYPDASEQE 76 >gi|312278175|gb|ADQ62832.1| DNA polymerase III subunit beta [Streptococcus thermophilus ND03] Length = 170 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/125 (9%), Positives = 46/125 (36%), Gaps = 4/125 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +Q+++ + +G+T + +E+G ++ + + +++ + + Sbjct: 2 NRLKELRQSKKKTQQEMADIVGVTKRTYIYWEQGERQIKPEKAKVLADYFGVTVGYLLGY 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 +E+ + + I E++ ++ K+ + Sbjct: 62 EDIEDLVTETEDILKKGVEEQQKARRQASDHY----DYFLETIFEVLSTLKEGTKENKLE 117 Query: 137 EEECM 141 ++E + Sbjct: 118 QKETL 122 >gi|295108102|emb|CBL22055.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 174 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 34/72 (47%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 ++ + N+ K + R +SQE+ E +G+T Q V ++E GV+ + L I Sbjct: 31 KRRRKVKDSNQNIAKAVLKIRQDNKLSQEQFAEMVGVTRQAVSRWEMGVSVPNINTLILI 90 Query: 63 SEVLESPISFFF 74 SE + P+ Sbjct: 91 SEKFDIPVDEML 102 >gi|257868272|ref|ZP_05647925.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257874455|ref|ZP_05654108.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|325568146|ref|ZP_08144587.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|257802386|gb|EEV31258.1| conserved hypothetical protein [Enterococcus casseliflavus EC30] gi|257808619|gb|EEV37441.1| conserved hypothetical protein [Enterococcus casseliflavus EC10] gi|325158347|gb|EGC70498.1| cro/CI family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 110 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 41/109 (37%), Gaps = 5/109 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R+ +Q+++ + LGIT +E N + ++E+ + F Sbjct: 1 MLGERLRTLRLRTNQTQQQIADQLGITRAAYSHFENDRNEPDGETIVKLAEIFQVSTDFL 60 Query: 74 FD-----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + + ++ D ++ + Y I ++ Sbjct: 61 LGRQVPAGFTPPSAKVQTVAAHIDDDVTDEQMEDILSYIEFIKQRHAQK 109 >gi|182683999|ref|YP_001835746.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|182629333|gb|ACB90281.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] Length = 177 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 34/95 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 20 MIGKNIKSLRKTHDLTQHEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 79 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + E ++ + L+R + Sbjct: 80 VGENKMLNPVEDYELTLKIEIVKERGANLLSRLYR 114 >gi|170751194|ref|YP_001757454.1| XRE family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657716|gb|ACB26771.1| transcriptional regulator, XRE family [Methylobacterium radiotolerans JCM 2831] Length = 201 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ +G ++R R +S L GI+ V K E G + + +++ L P Sbjct: 15 SLERALGHQVRALRRERELSVADLSAAAGISPGMVSKIENGQISPSLATVNAVAKALNVP 74 Query: 70 ISFFFDVSPTVCS 82 I+ F Sbjct: 75 ITTLFAAFEESRD 87 >gi|167759110|ref|ZP_02431237.1| hypothetical protein CLOSCI_01457 [Clostridium scindens ATCC 35704] gi|167663228|gb|EDS07358.1| hypothetical protein CLOSCI_01457 [Clostridium scindens ATCC 35704] Length = 126 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R LG++ EK G+ LGI V K EKG N + + ++ I + Sbjct: 5 ERVKEVRKTLGLTLEKFGDRLGIKKAAVSKIEKGENSLTDANIKSICREFSVDYMWLTTG 64 Query: 77 SPTVCSDISSEENNVMDFIS-----TPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + + +D I T + + DD++ ++++ S+ + K Sbjct: 65 EGEMFVETDDDFFERIDRIMAGENETRKNMIKMLLYASDDDIEAFDRLVDYYISLRAENK 124 Query: 132 KY 133 K Sbjct: 125 KD 126 >gi|163734287|ref|ZP_02141727.1| DNA-binding protein [Roseobacter litoralis Och 149] gi|161392295|gb|EDQ16624.1| DNA-binding protein [Roseobacter litoralis Och 149] Length = 190 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ L E LG + + + E+ + S L+ I++VLE IS F Sbjct: 12 LGADLRALRKARGLTLADLAERLGRSVGWLSQVERDKSDPSISDLRAIAKVLEVSISMLF 71 Query: 75 DVSPTVCSDI 84 +P ++ Sbjct: 72 RHAPATATEA 81 >gi|119871924|ref|YP_929931.1| XRE family transcriptional regulator [Pyrobaculum islandicum DSM 4184] gi|119673332|gb|ABL87588.1| transcriptional regulator, XRE family [Pyrobaculum islandicum DSM 4184] Length = 516 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+ R G+S +L G++ + + E + L I+ L P Sbjct: 5 LGNRLSELRRRKGLSLSRLARLAGVSKSTLWEIENDKISPSINTLWAIANALGVPFGEL 63 >gi|73490241|dbj|BAE19798.1| hypothetical protein [Pseudomonas fluorescens] Length = 198 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 2/92 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+R++ R + G+SQ +L + G+T + EK S L+ + + + FF Sbjct: 19 VGERLQSIRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSISSLRKVLSGIPMSMVEFF 78 Query: 75 --DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + I + N ++D ++L Sbjct: 79 SEEILQENPTQIVYKANELIDISDGAVTMKLV 110 >gi|323486027|ref|ZP_08091358.1| hypothetical protein HMPREF9474_03109 [Clostridium symbiosum WAL-14163] gi|323400594|gb|EGA92961.1| hypothetical protein HMPREF9474_03109 [Clostridium symbiosum WAL-14163] Length = 143 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 25/61 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + ++ R G +Q +L GI + + +E G + + ++++ + Sbjct: 1 MYLAENLKFLREQNGKTQGELAVLFGIEQKTISSWECGSRKPPIGTIVSLAKLYRVSLDD 60 Query: 73 F 73 Sbjct: 61 L 61 Score = 36.3 bits (82), Expect = 1.2, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R GM+Q++L E +G+ + E G L+ +++ + Sbjct: 76 NLAYLRKKYGMTQQELVEIIGLKNKSSISLIENGKYEPSIENLEKLADFFGVTMDQI 132 >gi|313669549|ref|YP_004049974.1| hypothetical protein Sulku_2772 [Sulfuricurvum kujiense DSM 16994] gi|313156746|gb|ADR35421.1| protein of unknown function DUF955 [Sulfuricurvum kujiense DSM 16994] Length = 354 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RI R G+S L + +G++ + KYEK + L +S+ L +FF Sbjct: 3 GERIARARKTAGLSLRGLADQVGVSQTAIAKYEKNQIHPDSQMLLKLSQALGVKSGYFF 61 >gi|312879205|ref|ZP_07739005.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM 12260] gi|310782496|gb|EFQ22894.1| transcriptional regulator, XRE family [Aminomonas paucivorans DSM 12260] Length = 134 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 53/127 (41%), Gaps = 3/127 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R G+ Q++L E +GI+ + + E+G L+ S VL P++ + Sbjct: 5 GSRIREARKARGLEQKELAERMGISAAFLSRIERGERGCSLDLLRRASAVLGCPLAELAE 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVR-SIVSSEKK 132 +P + ++ L L + D + R+ + + ++ ++ +++ Sbjct: 65 ETPRPERQALEDLLDLAVREHPEVALYLRHLSGKAGDLTEEERRFLADHLKLALGQADEA 124 Query: 133 YRTIEEE 139 R E Sbjct: 125 LRRHRRE 131 >gi|291520457|emb|CBK75678.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4] Length = 111 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 37/74 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+L R ++QEKL E L I+ V K E+G+ L I+++++ I+ Sbjct: 8 IGSRIKLYRKSKKLTQEKLAELLAISVGYVSKMERGIEHPNLEMLSSIAQIVDCDIANLI 67 Query: 75 DVSPTVCSDISSEE 88 S ++ ++ Sbjct: 68 SESTISQTEYLDDD 81 >gi|302537531|ref|ZP_07289873.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. C] gi|302446426|gb|EFL18242.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sp. C] Length = 509 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L + LG + V + E+G + + I E L Sbjct: 1 MADDYLVRIGKLIRDARQHRGWTQSQLADALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|290894331|ref|ZP_06557297.1| predicted protein [Listeria monocytogenes FSL J2-071] gi|290556150|gb|EFD89698.1| predicted protein [Listeria monocytogenes FSL J2-071] Length = 237 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/106 (12%), Positives = 36/106 (33%), Gaps = 3/106 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++R R +Q L E +G++ + V ++E+ + + I V + + + Sbjct: 1 MAIHMKLREERKRKQWTQNVLAEKIGVSREVVGRWERLESIPTLKNCKSICRVFDITMDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS---TPDGLQLNRYFIQIDDVKV 115 + D + + R + I ++ Sbjct: 61 LIKDEVDTKDNQLKYMKLGKDILDLANERYPIDFIRKYHIISKEEI 106 >gi|258512333|ref|YP_003185767.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479059|gb|ACV59378.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 165 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+RI R G++Q KL E ++ + YE + L I+E L ++ Sbjct: 10 VGERIAQLRKERGLTQAKLAERARLSTSAIAMYETNRRQPDERTLAQIAEALGVEMTQI 68 >gi|170690931|ref|ZP_02882097.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] gi|170144180|gb|EDT12342.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] Length = 207 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 32/88 (36%), Gaps = 2/88 (2%) Query: 7 IPNPVDI--NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P+ + VG++I+ R M+ + L G++ + + E+ + ++ Sbjct: 20 TPSAIAAPPRVGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTN 79 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVM 92 L + F T + + + + Sbjct: 80 ALGVSLDSLFAPQKTPEAIAVAGPHEIP 107 >gi|167770470|ref|ZP_02442523.1| hypothetical protein ANACOL_01815 [Anaerotruncus colihominis DSM 17241] gi|167667065|gb|EDS11195.1| hypothetical protein ANACOL_01815 [Anaerotruncus colihominis DSM 17241] Length = 71 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R G SQ + LGIT + +KYE G + S + +++ + + + Sbjct: 5 KRLKELRNAKGTSQIAIAAALGITDRGYRKYEAGDSEPTLSVIIALADYFDVSLDYLCGR 64 Query: 77 SPTVC 81 S Sbjct: 65 SDDPA 69 >gi|220916034|ref|YP_002491338.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953888|gb|ACL64272.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 260 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 3/108 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R +S EKL + G++ + + E G + + L IS L P S Sbjct: 80 VGTNLRRLRTQRDLSLEKLSKLSGVSRAMLGQIELGQSAPTINVLWKISSALSVPFSALI 139 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 T + +S+ DG +R D+ + R + EL Sbjct: 140 TARSTGGLHVLR--AEHAKVLSSHDGSYSSRALFPFDEPR-RVEFYEL 184 >gi|153953129|ref|YP_001393894.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146346010|gb|EDK32546.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 65 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R QE L LG+T Q + E ++ +L + + F+ Sbjct: 5 IKKLRKEKNYRQEDLANALGVTRQTINAIENNKYDPTLLLAFKLANILGTTVDKLFEPD 63 >gi|332519788|ref|ZP_08396252.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4] gi|332044347|gb|EGI80541.1| helix-turn-helix domain protein [Lacinutrix algicola 5H-3-7-4] Length = 258 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 33/82 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + K I+ R + +SQE L E L +T ++ YE+ + L S+ + PI Sbjct: 3 YISKNIKHLRNLKKLSQEGLAEELNVTRSRIGSYEENRSSPTIEFLIAFSDYFKIPIDIL 62 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 T D S E N + Sbjct: 63 LRNDLTKAKDFSFIELNNQRVL 84 >gi|317120864|ref|YP_004100867.1| hypothetical protein Tmar_0015 [Thermaerobacter marianensis DSM 12885] gi|315590844|gb|ADU50140.1| helix-turn-helix domain protein [Thermaerobacter marianensis DSM 12885] Length = 73 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G +Q + LGI+ + +YE G+ ++++ PI F Sbjct: 8 QLRKARGWTQYDVARMLGISRARYSQYELGLRNPPIDVAIRLADLFGVPIQELF 61 >gi|308177557|ref|YP_003916963.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] gi|307745020|emb|CBT75992.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis Re117] Length = 191 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD + +RIR R LG S E L ++ + + E G R+ +L I++ L + + Sbjct: 7 VDQVIRQRIRNLRQNLGWSLESLASKASMSVSTLSRIETGSRRIALDQLIPIAKALNTSL 66 Query: 71 SFFFDVSPTV 80 S Sbjct: 67 DELVSTSEAQ 76 >gi|291531986|emb|CBK97571.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 110 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 34/85 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R +Q+++ + LG + Q KYE G + R +++ + + + Sbjct: 5 QRLRDLREDADKTQQEIADYLGTSAQHYGKYESGKAEIPLERAVLLAKYYNVSLDYIAGI 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGL 101 S + S + + +S Sbjct: 65 SSSRHPLTSDSSLSPIGILSDKITR 89 >gi|228903645|ref|ZP_04067765.1| hypothetical protein bthur0014_48030 [Bacillus thuringiensis IBL 4222] gi|228855913|gb|EEN00453.1| hypothetical protein bthur0014_48030 [Bacillus thuringiensis IBL 4222] Length = 65 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 8/59 (13%), Positives = 21/59 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 7 IKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTLE 65 >gi|226949688|ref|YP_002804779.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226842029|gb|ACO84695.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 82 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R ++Q+++ L IT V YE G+ S L I++ + + Sbjct: 6 RLKGLREDRDLTQDQIANILKITRSAVANYENGIREPDISLLVKIADYFNISLDYLL 62 >gi|224543501|ref|ZP_03684040.1| hypothetical protein CATMIT_02710 [Catenibacterium mitsuokai DSM 15897] gi|224523628|gb|EEF92733.1| hypothetical protein CATMIT_02710 [Catenibacterium mitsuokai DSM 15897] Length = 126 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V +K N ++G+ ++ R+ M+QE + E LG++ Q V K+E G + + L Sbjct: 45 VREEKKVNA--KSLGESLKENRLRCKMTQEFVAETLGVSRQAVSKWENGTSDPNTTNLIA 102 Query: 62 ISEVLESPISFFF 74 +S + + Sbjct: 103 LSRLYKVTPEDLL 115 >gi|169342567|ref|ZP_02863620.1| helix-turn-helix domain protein [Clostridium perfringens C str. JGS1495] gi|169299339|gb|EDS81406.1| helix-turn-helix domain protein [Clostridium perfringens C str. JGS1495] Length = 112 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 2/96 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R L +SQ+ G L ++ + E+G + + I + S+ + Sbjct: 3 NRLKELRKTLNLSQKDFGAKLKLSPDMISLLERGKRKFTERVISDICREFDVNRSWLENG 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + DI +E + + + D ++ R ++Q+DD Sbjct: 63 EGDMFIDILAEIDEFNN--ADKDVQEMVRLYMQLDD 96 >gi|154496287|ref|ZP_02034983.1| hypothetical protein BACCAP_00574 [Bacteroides capillosus ATCC 29799] gi|150274370|gb|EDN01447.1| hypothetical protein BACCAP_00574 [Bacteroides capillosus ATCC 29799] Length = 74 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R + Q++L L + YE G V A L ++ + + + + Sbjct: 5 ARIRALREDADLKQKELAAMLNLHQTTYSDYELGRLNVPAPVLIQLAGFYHTSVDYILGL 64 >gi|126741323|ref|ZP_01757000.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126717579|gb|EBA14304.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 189 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R G++ + L + + + E+ ++ S L+ IS L P+S F Sbjct: 11 LGADIRALRKARGLTLTDIAGMLDRSVGWLSQVERDLSEPSISDLRQISNCLGVPMSMLF 70 Query: 75 DVSPTVCSD 83 S + Sbjct: 71 AHSGAPAEE 79 >gi|161521857|ref|YP_001585284.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189351982|ref|YP_001947609.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|160345907|gb|ABX18992.1| transcriptional regulator, XRE family [Burkholderia multivorans ATCC 17616] gi|189336004|dbj|BAG45073.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC 17616] Length = 203 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P I + + + ++ DG R + ID Sbjct: 86 S-QPKAPEAIRVDGPHDIPTLAGHDGQYQLRVWGPID 121 >gi|260906742|ref|ZP_05915064.1| transcriptional regulator, XRE family protein [Brevibacterium linens BL2] Length = 69 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R G++Q +L + G++ Q + E+G I+ LE+ + F + Sbjct: 6 SNLKHVRKAAGLTQAQLAQRTGVSRQTIIATERGDYAPSVYLALRIARSLETTVEEIFSL 65 Query: 77 SPTV 80 Sbjct: 66 QEEA 69 >gi|119384106|ref|YP_915162.1| hypothetical protein Pden_1365 [Paracoccus denitrificans PD1222] gi|119373873|gb|ABL69466.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 477 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R+ R LG++Q ++ LG++ V E A L ++E+ + I+ Sbjct: 9 IGQRLRVLRQSLGLTQAQMAAELGVSASYVTLIESDQRPASARFLMRLAEIYDLNIAEL 67 >gi|323126868|gb|ADX24165.1| putative transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 113 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 41/105 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++L R ++Q ++ + LG++ Q +E+GV + L +S + + Sbjct: 5 ERLKLLRTQAKLTQSQIAKKLGVSQQAYGDWERGVKKPTQDNLVKLSNIFNVSVDSLLVG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 E +L ++ +K R+KI++ Sbjct: 65 EENDVDLSEVEILFRNTSKGMTKEEKLIFKNELMEFMKERKKILK 109 >gi|319937771|ref|ZP_08012174.1| transcriptional regulator Cro/CI family protein [Coprobacillus sp. 29_1] gi|319807206|gb|EFW03820.1| transcriptional regulator Cro/CI family protein [Coprobacillus sp. 29_1] Length = 75 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 34/72 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I G+R++ R+I +SQE+L ++ V E+G V ++ ++ L+ P+ Sbjct: 4 INIKFGRRVKELRLIQNISQEELAFRCQLSKNYVSDVERGTRNVTLKVVEKFAQGLKVPV 63 Query: 71 SFFFDVSPTVCS 82 F + Sbjct: 64 HILFRWHDDIDE 75 >gi|268610104|ref|ZP_06143831.1| hypothetical protein RflaF_11484 [Ruminococcus flavefaciens FD-1] Length = 119 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 45/111 (40%), Gaps = 4/111 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R L +SQ +L E I+ + K E G + G S L ISE L+ Sbjct: 9 VPIGERIKQARKELDISQTELAERADISVPYLSKIEMGKSDFGVSVLIRISEALQISTDK 68 Query: 73 FFDVSPTVCSDISSEE----NNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + I++++ + + ++ + + + KI Sbjct: 69 LLRPDIPETTIIAADDLSKVLDGCTPMEKASIIETAKNMRKAFTEAKKNKI 119 >gi|266621149|ref|ZP_06114084.1| transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288867198|gb|EFC99496.1| transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 66 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 KR+++ R+ +SQE+LGE +G+T Q + E G + I + L + F Sbjct: 4 KRLKIARIEHDLSQEQLGERVGVTRQTISMIESGNYNPTLNLCIAICKELGKTLDELF 61 >gi|259417133|ref|ZP_05741052.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] gi|259346039|gb|EEW57853.1| transcriptional regulator, XRE family with cupin sensor [Silicibacter sp. TrichCH4B] Length = 188 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 3/79 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + R++ R G+S E + G++ V + E+G + + L Sbjct: 1 MTDTT---DDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLW 57 Query: 61 HISEVLESPISFFFDVSPT 79 +++ L+ + + S T Sbjct: 58 NLTRALQVDFAGLLEASET 76 >gi|228969513|ref|ZP_04130324.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] gi|228790215|gb|EEM37986.1| Transcriptional regulator, Cro/CI [Bacillus thuringiensis serovar sotto str. T04001] Length = 114 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 45/117 (38%), Gaps = 7/117 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R + G +Q++LG +G+ + E G + +EV + Sbjct: 5 GERVKTLRKMKGWTQDELGAAVGLKKAAISGIENNKRDRGEKSVSKFAEVFGCTADYLLG 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 S + DF ++ ++ + + ++ + ++ S + + KK Sbjct: 65 FSDDPALNSEQNLRLKKDFD------EIYNKLKELPETE-QEMYLRMINSFIDANKK 114 >gi|227431795|ref|ZP_03913822.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352478|gb|EEJ42677.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 65 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G+SQ++L + I + +++YE G N + L +++ E I + Sbjct: 2 NRLRELRNERGLSQDRLANEMLINIKTLRRYEVGENDPRVAILIDLADYFEVSIDYLAGR 61 Query: 77 SP 78 S Sbjct: 62 SD 63 >gi|163838971|ref|YP_001623376.1| Cro/CI family transcriptional regulator [Renibacterium salmoninarum ATCC 33209] gi|162952447|gb|ABY21962.1| transcriptional regulator, Cro/CI family [Renibacterium salmoninarum ATCC 33209] Length = 191 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 30/74 (40%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M PN + +G RIR R ++ E + E G+T + + E+ + L Sbjct: 1 MKALPAEPNQGPVQIGSRIRAARQAQRLTIEHVAEATGLTKGFLSRVERDFTSPSVASLV 60 Query: 61 HISEVLESPISFFF 74 + EVL I F Sbjct: 61 TLCEVLAISIGDLF 74 >gi|66769288|ref|YP_244050.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|66574620|gb|AAY50030.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] Length = 460 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 55/134 (41%), Gaps = 10/134 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R G++Q +L LG++ + + E+ + + Q + L Sbjct: 11 QLGLRLQRLRQRHGLTQAELARRLGLSPSYLNQIERNQRPLTLAIQQRLKTALG------ 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVRSIVSSE 130 D+ + +D + +D G L+ +++ +V Q +++L R+ + Sbjct: 65 -DLDGLLSADDPAALVEPLDEALRALGHGLSAAELRMLTGNLPQVAQALLDLQRAHTHLQ 123 Query: 131 KKYRTIEEECMVEQ 144 ++ +E + E Sbjct: 124 ERTAALEVQVGAEH 137 >gi|16803435|ref|NP_464920.1| hypothetical protein lmo1395 [Listeria monocytogenes EGD-e] gi|254827656|ref|ZP_05232343.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|254829846|ref|ZP_05234501.1| hypothetical protein Lmon1_00755 [Listeria monocytogenes 10403S] gi|255017336|ref|ZP_05289462.1| hypothetical protein LmonF_05368 [Listeria monocytogenes FSL F2-515] gi|255026434|ref|ZP_05298420.1| hypothetical protein LmonocytFSL_09020 [Listeria monocytogenes FSL J2-003] gi|284801781|ref|YP_003413646.1| hypothetical protein LM5578_1536 [Listeria monocytogenes 08-5578] gi|284994923|ref|YP_003416691.1| hypothetical protein LM5923_1488 [Listeria monocytogenes 08-5923] gi|16410824|emb|CAC99473.1| lmo1395 [Listeria monocytogenes EGD-e] gi|258600035|gb|EEW13360.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|284057343|gb|ADB68284.1| hypothetical protein LM5578_1536 [Listeria monocytogenes 08-5578] gi|284060390|gb|ADB71329.1| hypothetical protein LM5923_1488 [Listeria monocytogenes 08-5923] Length = 309 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 6/116 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G +++ R G+S + L + I + + E+G V + +E + Sbjct: 3 ELGDKLKQARREKGLSLDDLQQITKIQKRYLVAIEEGNYAVMPGKFYARAFIKQYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + FD + + +E + + R + +++ Sbjct: 63 LDSATLFDEFESEVPETPQQEVVNNEPTRVQSKRNPMPAQSVGNQANTRNRFFDIL 118 >gi|134288210|ref|YP_001110373.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134132860|gb|ABO59570.1| transcriptional regulator, XRE family [Burkholderia vietnamiensis G4] Length = 217 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKR++ RM L + + G++ + K E GV LQ I L+ + Sbjct: 15 ELGKRVKAARMHLDYTLDAASRVCGVSRSTLSKIENGVMSPTFDVLQRIVHGLKIDLGEL 74 Query: 74 FDVSPTVCSD 83 F +P ++ Sbjct: 75 FGSAPRPRAN 84 >gi|47567072|ref|ZP_00237789.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|206970262|ref|ZP_03231215.1| DNA-binding protein [Bacillus cereus AH1134] gi|206978226|ref|ZP_03239106.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217962506|ref|YP_002341078.1| DNA-binding protein [Bacillus cereus AH187] gi|218234825|ref|YP_002369834.1| DNA-binding protein [Bacillus cereus B4264] gi|222098481|ref|YP_002532539.1| DNA-binding protein [Bacillus cereus Q1] gi|296505465|ref|YP_003667165.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|47556390|gb|EAL14724.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|206734839|gb|EDZ52008.1| DNA-binding protein [Bacillus cereus AH1134] gi|206743585|gb|EDZ55012.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217065545|gb|ACJ79795.1| DNA-binding protein [Bacillus cereus AH187] gi|218162782|gb|ACK62774.1| DNA-binding protein [Bacillus cereus B4264] gi|221242540|gb|ACM15250.1| DNA-binding protein [Bacillus cereus Q1] gi|296326517|gb|ADH09445.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 73 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 29/73 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 1 MKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEE 60 Query: 73 FFDVSPTVCSDIS 85 F + D Sbjct: 61 IFTLVEGEEDDEE 73 >gi|322516931|ref|ZP_08069826.1| XRE family transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322124508|gb|EFX95995.1| XRE family transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 108 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 39/100 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + KRIR+ R+ GM+QE L E + V K E + L+ I + L+ I F Sbjct: 7 YISKRIRVLRIKEGMTQEMLEEKAELGTNYVYKIENLEPNIKIKTLEKIMKALDVDIPTF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 FDV+ + + + + +L I Sbjct: 67 FDVTLKEEDSDLVKLIDNLKALPEYKQKKLITAINTIMTE 106 >gi|322376588|ref|ZP_08051081.1| putative transcriptional regulator [Streptococcus sp. M334] gi|321282395|gb|EFX59402.1| putative transcriptional regulator [Streptococcus sp. M334] Length = 158 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|315127949|ref|YP_004069952.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315016463|gb|ADT69801.1| Predicted transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 66 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 23/62 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R G+SQ++L + + ++ + + E I++ + + F + Sbjct: 5 IAEFRKKAGLSQQELADAINVSRKTISTVETSRFTPSVIIALKIAQHFNTSVERLFSLDE 64 Query: 79 TV 80 Sbjct: 65 HD 66 >gi|309702160|emb|CBJ01475.1| putative phage protein [Escherichia coli ETEC H10407] Length = 134 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 16/126 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R LG+SQ + + G+ +YEKG + A+ L +S + + Sbjct: 5 IGQRLREERERLGLSQVAMSDIGGVKKLTQLRYEKGDSFPDAAYLAALSR-FGLDVQYVV 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + E+ +L F + + V+ +I ++ SEK+ + Sbjct: 64 LGIHSPETYNDDEQ-------------ELITRF-RAASLDVKNAVIGALKG-AISEKETQ 108 Query: 135 TIEEEC 140 E Sbjct: 109 PSGREL 114 >gi|300312342|ref|YP_003776434.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] gi|300075127|gb|ADJ64526.1| XRE family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 124 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 27/70 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ R++ GM+Q L + + E G + G L+ + + +++ Sbjct: 19 AIGERLKSVRLLAGMNQRDFAARLKTSGAYISCVELGHSMPGGRFLRSLHHEFDVNVNWL 78 Query: 74 FDVSPTVCSD 83 Sbjct: 79 LTGQEPSLPP 88 >gi|261250781|ref|ZP_05943355.1| predicted transcriptional regulator [Vibrio orientalis CIP 102891] gi|260937654|gb|EEX93642.1| predicted transcriptional regulator [Vibrio orientalis CIP 102891] Length = 207 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGERIKTIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAMGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|260597934|ref|YP_003210505.1| hypothetical protein CTU_21420 [Cronobacter turicensis z3032] gi|260217111|emb|CBA30892.1| hypothetical protein CTU_21420 [Cronobacter turicensis z3032] Length = 199 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 33/88 (37%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + + +R++ R ++ + L G++ + + EK + L Sbjct: 8 MTEPGADIDSLSVALAQRLKSWRKEHNVTLDTLSRRAGVSKGMLVELEKAAANPSIAILC 67 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEE 88 I+ L ++ DV+ + + Sbjct: 68 KIAAALGLSVADLLDVASQPAARLIEAS 95 >gi|239945081|ref|ZP_04697018.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces roseosporus NRRL 15998] gi|239991543|ref|ZP_04712207.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces roseosporus NRRL 11379] gi|291448543|ref|ZP_06587933.1| UDP-N-acetylglucosamine transferase [Streptomyces roseosporus NRRL 15998] gi|291351490|gb|EFE78394.1| UDP-N-acetylglucosamine transferase [Streptomyces roseosporus NRRL 15998] Length = 509 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MSDDYLVRIGKLIRDARQHRGWTQTQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|238924797|ref|YP_002938313.1| hypothetical protein EUBREC_2448 [Eubacterium rectale ATCC 33656] gi|238876472|gb|ACR76179.1| Hypothetical protein EUBREC_2448 [Eubacterium rectale ATCC 33656] gi|291526055|emb|CBK91642.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 108 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI++RR L + Q +L E L I+ + E G + I ++L + Sbjct: 2 GNRIKIRRKELRIKQAELAEKLNISNNHMSSIENGRQKPSLDIFIRICDLLNVTPDYLLL 61 Query: 76 VS 77 S Sbjct: 62 GS 63 >gi|229065719|ref|ZP_04200943.1| Transcriptional regulator, MerR [Bacillus cereus AH603] gi|228715537|gb|EEL67338.1| Transcriptional regulator, MerR [Bacillus cereus AH603] Length = 186 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 1/129 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +INVG++I + R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 5 NINVGQKIMVFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISVALNIPLF 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF + T ++ N G D + ++ L+ SS + Sbjct: 65 NFF-LEDTNTEELVVRANQRKKITFPESGNVSYELLSPNLDGSLELALMNLLPQTASSME 123 Query: 132 KYRTIEEEC 140 EE Sbjct: 124 PVAHKGEEI 132 >gi|167760715|ref|ZP_02432842.1| hypothetical protein CLOSCI_03100 [Clostridium scindens ATCC 35704] gi|167661602|gb|EDS05732.1| hypothetical protein CLOSCI_03100 [Clostridium scindens ATCC 35704] Length = 202 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++I+ R +G++Q+KL E GI ++KYE + +L+ I+ L + Sbjct: 1 MTVGEKIKYCRKQIGITQDKLAELTGIHPVSIRKYETNKMQPQPPQLEKIAAALGVSYNA 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|329116131|ref|ZP_08244848.1| peptidase S24-like protein [Streptococcus parauberis NCFD 2020] gi|326906536|gb|EGE53450.1| peptidase S24-like protein [Streptococcus parauberis NCFD 2020] Length = 230 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 3/115 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R MSQE+LG+ LG+ + +EK N L + + E+ +F + Sbjct: 4 GKQLKKIRQQHKMSQEQLGQELGVNKMTISNWEKDKNSPNQKHLNALVSIFETDQDYF-N 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI--IELVRSIVS 128 + + T L + I ++++ + S+ + Sbjct: 63 HYQEIIIPYKQLTKQNQSKVVTYSEKLLAQESKIITLPTKKKELFSYRVYESLSA 117 >gi|295705479|ref|YP_003598554.1| DNA-binding protein [Bacillus megaterium DSM 319] gi|294803138|gb|ADF40204.1| DNA-binding protein [Bacillus megaterium DSM 319] Length = 181 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 33/63 (52%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I++GK++ R G+S +L + IT + + E+G+ S L+ +++ L+ P Sbjct: 3 NIDIGKKVEKFRKEKGLSSRELAKLADITPSMLSQIERGLANPSISTLKLLAKSLDVPTF 62 Query: 72 FFF 74 F Sbjct: 63 SFL 65 >gi|257418469|ref|ZP_05595463.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] gi|257160297|gb|EEU90257.1| cro/CI family transcriptional regulator [Enterococcus faecalis T11] Length = 250 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ + Sbjct: 24 KQVGARMRETRKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTVD 83 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + ++ + ++ Sbjct: 84 WLLYGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMGRLSEEQL 125 >gi|271964073|ref|YP_003338269.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270507248|gb|ACZ85526.1| transcriptional regulator [Streptosporangium roseum DSM 43021] Length = 64 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G+SQ+ LGE LG++ Q + E+G ++ + F Sbjct: 5 VRELRGSAGLSQQALGERLGVSRQTINAIEQGRYDPSLPLAIRLARFFGRTVEEVFHCDD 64 >gi|218134936|ref|ZP_03463740.1| hypothetical protein BACPEC_02841 [Bacteroides pectinophilus ATCC 43243] gi|217990321|gb|EEC56332.1| hypothetical protein BACPEC_02841 [Bacteroides pectinophilus ATCC 43243] Length = 188 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ +R ++Q++ + LG + + +QKYE G + L+ I+ L P Sbjct: 6 EIGKAIQKQRRAQKITQKEFAQHLGKSERTIQKYESGEILMKIDVLKQIANELNVPWQEL 65 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 ++ T Sbjct: 66 LSPEDNNIPKDNTATEYPAYEFHT 89 >gi|297201083|ref|ZP_06918480.1| regulatory protein [Streptomyces sviceus ATCC 29083] gi|197712131|gb|EDY56165.1| regulatory protein [Streptomyces sviceus ATCC 29083] Length = 448 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 5/116 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R+ G++Q++L E T + E G R L+H+++ L Sbjct: 10 IGRRVQQLRVERGLTQKQLAE-PAYTPAYISTLESGRVRPSDDALRHLADRLGVGFEELA 68 Query: 75 DVSPTV-CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 P +D+ ++T + + + ++ ++L ++ Sbjct: 69 TGRPARLVTDLRLRLTEAQRTLATGEAEESATQYARLLTEADG---LDLAEVRAAA 121 >gi|194289198|ref|YP_002005105.1| XRE family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223033|emb|CAQ69038.1| putative transcriptional regulator, xenobiotic response element (XRE) family [Cupriavidus taiwanensis LMG 19424] Length = 149 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 1/101 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R G SQE L G++ + E G + + + ++E L P + D Sbjct: 10 GLHLAWLRKQRGWSQETLSLESGLSRSYLSGIESGKRNLALANICRLAETLAVPTAEMLD 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQL-NRYFIQIDDVKV 115 S S + E++ ++ + ++ + ++ Sbjct: 70 FSRHDASQLQVEQSRAPFGNRQRAAIEATVHHMTELTEPEL 110 >gi|170691179|ref|ZP_02882345.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] gi|170144428|gb|EDT12590.1| transcriptional regulator, XRE family [Burkholderia graminis C4D1M] Length = 230 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 31/74 (41%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P+ ++G+R+R R ++ E G++ + K E G+ LQ I Sbjct: 26 TKPAEPLTTDLGRRVRAARQSQDLTLETASRLCGVSRSTLSKVENGLMSPTFDVLQKIVL 85 Query: 65 VLESPISFFFDVSP 78 L+ I F +P Sbjct: 86 GLKIEIGELFGSAP 99 >gi|163787647|ref|ZP_02182094.1| hypothetical protein FBALC1_03872 [Flavobacteriales bacterium ALC-1] gi|159877535|gb|EDP71592.1| hypothetical protein FBALC1_03872 [Flavobacteriales bacterium ALC-1] Length = 363 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK + R G++Q ++ E +T + +Q+ E G + +S ++ ISE L FF+ Sbjct: 7 GKELIKIRKARGLTQAEVAEKCNVTTRTIQRIESGAVKPRSSTIKIISEFLGVN---FFE 63 Query: 76 VSP 78 S Sbjct: 64 TSD 66 >gi|3219886|sp|Q57720|Y272_METJA RecName: Full=Uncharacterized HTH-type transcriptional regulator MJ0272 Length = 66 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R + ++QE L + LG++ Q + EKG I++ I F Sbjct: 3 NKLKYYRALHNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIFIY 62 Query: 77 SPTV 80 Sbjct: 63 EDDE 66 >gi|303243062|ref|ZP_07329512.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302589397|gb|EFL59195.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 114 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 34/65 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIR +R+ + ++QE+L E + +++ V + E+G + L ++ L + + Sbjct: 4 KALGERIRKQRLKVNLTQEQLAEKIDMSYSFVGQIERGDRVLSLETLVRLANELSISVDY 63 Query: 73 FFDVS 77 S Sbjct: 64 LIQDS 68 >gi|239928289|ref|ZP_04685242.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] gi|291436618|ref|ZP_06576008.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] gi|291339513|gb|EFE66469.1| UDP-N-acetylglucosamine transferase [Streptomyces ghanaensis ATCC 14672] Length = 509 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G+ IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MADDYLVRIGRLIRDARQHRGWTQAQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|218290714|ref|ZP_03494796.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239252|gb|EED06451.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 72 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + R+ G++QE++ G+ K E G + Q IS V+ P FF+ Sbjct: 6 LAKWRIEHGLTQEEMAARCGLKRVTYAKVEYGK-TISVETAQKISRVVGVPWPQFFEDD 63 >gi|168210926|ref|ZP_02636551.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|209947633|ref|YP_002291140.1| putative LexA repressor [Clostridium perfringens] gi|170711066|gb|EDT23248.1| LexA repressor [Clostridium perfringens B str. ATCC 3626] gi|209910424|dbj|BAG75513.1| putative LexA repressor [Clostridium perfringens] Length = 379 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 47/128 (36%), Gaps = 2/128 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R +SQE + L I + YE+ + L +SEV+ I + Sbjct: 14 LKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSEPPIYTLVKMSEVMNCSIDELLGTTK 73 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV--RQKIIELVRSIVSSEKKYRTI 136 + + + + +L + + + +++ ++ + S+K+ + Sbjct: 74 AISNSAEEKFSYNELIEKIYYLNELIDKNRKNYEDLIMSKKRTERMLDELSMSKKRTERM 133 Query: 137 EEECMVEQ 144 +E + + Sbjct: 134 FDELSMSK 141 >gi|167769192|ref|ZP_02441245.1| hypothetical protein ANACOL_00515 [Anaerotruncus colihominis DSM 17241] gi|167668832|gb|EDS12962.1| hypothetical protein ANACOL_00515 [Anaerotruncus colihominis DSM 17241] Length = 166 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 11/128 (8%), Positives = 45/128 (35%), Gaps = 2/128 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R++ R G++Q++L E L + + YE + ++ L +S + Sbjct: 12 YLSARLKALRSEKGITQKQLAEQLNTSISSIISYENSIRFPSSAVLGLLSRYFNVSKEYL 71 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL--QLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + ++ ++ + ++ + ++ + +++ + + + Sbjct: 72 LGETDERRPAQKWDDPELIQAVRDNLSALFDTVEQAVRGVSDEEQKLVFDVMVELRHTLE 131 Query: 132 KYRTIEEE 139 + + Sbjct: 132 LKDIAQRQ 139 >gi|311747920|ref|ZP_07721705.1| putative transcriptional regulator [Algoriphagus sp. PR1] gi|126575914|gb|EAZ80224.1| putative transcriptional regulator [Algoriphagus sp. PR1] Length = 192 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 40/117 (34%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N V + +I+ R ++ + + + G+T + + E G L I + L Sbjct: 1 MENEVVAQISNKIKSVRKEKSLTLQDIADRAGVTKGLISQIENGRTIPSLLVLIEIIQAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 E FF S ++ L + +I K+ I++V Sbjct: 61 EVDFDSFFTELSKFSSGTKVFVQRKNEYQKFEKEDALGFDYSRIFTRKMPSSTIDIV 117 >gi|116688212|ref|YP_833835.1| hypothetical protein Bcen2424_0188 [Burkholderia cenocepacia HI2424] gi|116646301|gb|ABK06942.1| protein of unknown function DUF955 [Burkholderia cenocepacia HI2424] Length = 383 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 36/72 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G +R+ R+ SQ++LGE +G + Q + + E G + A+ + + + L F Sbjct: 2 IFIGSNLRIARLFHNFSQQELGEHIGCSKQFLSRLESGGDVPTAALVSKLCDQLAVLPEF 61 Query: 73 FFDVSPTVCSDI 84 F + P +D Sbjct: 62 FVEPDPMPIADE 73 >gi|26989603|ref|NP_745028.1| XRE family transcriptional regulator [Pseudomonas putida KT2440] gi|148548020|ref|YP_001268122.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|167033897|ref|YP_001669128.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|325276264|ref|ZP_08142055.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] gi|24984484|gb|AAN68492.1|AE016481_8 transcriptional regulator, putative [Pseudomonas putida KT2440] gi|148512078|gb|ABQ78938.1| transcriptional regulator, XRE family [Pseudomonas putida F1] gi|166860385|gb|ABY98792.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] gi|298682210|gb|ADI95276.1| XRE family transcriptional regulator [Pseudomonas putida] gi|313499097|gb|ADR60463.1| XRE family transcriptional regulator [Pseudomonas putida BIRD-1] gi|324098604|gb|EGB96659.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 181 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++L R +SQ +L G+T + + E+ S L+ + E + ++ FF Sbjct: 4 GTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRVSPSVSSLKKLLEGIPMSLAEFFS 63 Query: 76 VSPTVCSD 83 V + Sbjct: 64 FDEPVREE 71 >gi|324997834|ref|ZP_08118946.1| XRE family transcriptional regulator [Pseudonocardia sp. P1] Length = 187 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+R+R R G+S L GI + + E G S L ++ L P+S Sbjct: 9 AVGERLRSARTAHGLSVGALAARAGIGKGSLSELENGSRNPTLSTLYALANTLGLPVSHL 68 Query: 74 F 74 Sbjct: 69 L 69 >gi|237734898|ref|ZP_04565379.1| transcriptional regulator [Mollicutes bacterium D7] gi|229382226|gb|EEO32317.1| transcriptional regulator [Coprobacillus sp. D7] Length = 71 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R L M+Q+ L + +G++ Q + EKG I +VL + F Sbjct: 6 RIKAARAALDMTQKDLADAVGVSRQTMNAIEKGDYNPTVKLCIKICKVLNKSLDELFWED 65 >gi|229058432|ref|ZP_04196816.1| Transcriptional regulator, Xre [Bacillus cereus AH603] gi|228719941|gb|EEL71531.1| Transcriptional regulator, Xre [Bacillus cereus AH603] Length = 404 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+ L SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIANKLGCETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDDAEIVELIQ 74 >gi|228478091|ref|ZP_04062702.1| transcriptional regulator, xre family [Streptococcus salivarius SK126] gi|228250271|gb|EEK09524.1| transcriptional regulator, xre family [Streptococcus salivarius SK126] Length = 169 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + F Sbjct: 9 GPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLFG 68 Query: 76 VSPT-VCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIELVR 124 S E N D +S ++ +F+Q D + + ++ L R Sbjct: 69 TSKEIELEKSVLESNEYSDKVSEILKAVKYIEHFLQ-TDGQYLEDLLYLTR 118 >gi|170736644|ref|YP_001777904.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818832|gb|ACA93414.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 111 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR+R R+ G+SQE+LG GI +V +YE G + +++VL P SF Sbjct: 13 KRLREARLRSGLSQEQLGIEAGIDEFSASARVNQYETGKHAPKLQTAHRLAQVLHVPTSF 72 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 ++ + + + + D + Sbjct: 73 LYESNDLLARLLVAAAPLPQDSL 95 >gi|169334606|ref|ZP_02861799.1| hypothetical protein ANASTE_01009 [Anaerofustis stercorihominis DSM 17244] gi|169259323|gb|EDS73289.1| hypothetical protein ANASTE_01009 [Anaerofustis stercorihominis DSM 17244] Length = 102 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 25/70 (35%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 + R G SQE+ E L +T Q + +E G + I+++ + + D Sbjct: 1 MIRKKEGYSQEEAAEKLNVTRQTISNWETGQTSPSIEQSISIAKLYKISLDELTDNDIRN 60 Query: 81 CSDISSEENN 90 + Sbjct: 61 VIENKVSNTE 70 >gi|167766468|ref|ZP_02438521.1| hypothetical protein CLOSS21_00974 [Clostridium sp. SS2/1] gi|167711877|gb|EDS22456.1| hypothetical protein CLOSS21_00974 [Clostridium sp. SS2/1] Length = 123 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 43/100 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+R+R +R +SQE L E +GI+ V + E G + + EVL + + Sbjct: 18 IQLGERVRQKRKDCHLSQETLAEKVGISVNTVSRIEGGQAAISIEIFVKLVEVLGADANE 77 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +P + + + + + + + + + + D Sbjct: 78 LLGKNPEGDRNPAHKMVSRVLNLQPKEQKIVIQTISALMD 117 >gi|163938083|ref|YP_001642967.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229165063|ref|ZP_04292859.1| Transcriptional regulator Xre [Bacillus cereus AH621] gi|163860280|gb|ABY41339.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228618448|gb|EEK75477.1| Transcriptional regulator Xre [Bacillus cereus AH621] Length = 67 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RIR R + G +QE + LG++ + + E+G + +++ L I Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKTLNVSIDELM 65 >gi|254831844|ref|ZP_05236499.1| hypothetical protein Lmon1_10845 [Listeria monocytogenes 10403S] Length = 300 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 11/113 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R+ G++Q+++ + I+ +EKG + + S + I + + P+ FF Sbjct: 5 GELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFF- 62 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY--------FIQIDDVKVRQKII 120 + +++ +DF+ + + + +VR+ I+ Sbjct: 63 -FIYRDFSSTEDDSFWIDFVELSGKNDVVGMQALLDKITLERTEQTEVRKAIL 114 >gi|34496668|ref|NP_900883.1| hypothetical protein CV_1213 [Chromobacterium violaceum ATCC 12472] gi|34102523|gb|AAQ58888.1| conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] Length = 115 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 16/119 (13%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G+ + R LGM+QE L E LG+ + + + E+G + RL ++EVL + Sbjct: 9 LNQRIGQAVARHRKALGMNQEDLAEKLGVGLEAISRLERGRIKPTLVRLLELAEVLGCSV 68 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + D L + ++ RQ ++++V + Sbjct: 69 NDLLSETSVNPGD---------------QARYLEQLLARLKQAD-RQLVVDMVEQLSDR 111 >gi|308067835|ref|YP_003869440.1| transcriptional regulator [Paenibacillus polymyxa E681] gi|305857114|gb|ADM68902.1| Putative HTH-type transcriptional regulator [Paenibacillus polymyxa E681] Length = 115 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 2/104 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G+SQE L E G + E+ + L+ I++ L + Sbjct: 8 VGTRIRDIRKSKGLSQEALAEKAGFNSSYIGFIERAERNISLKNLEKIAKALNVGVYQLL 67 Query: 75 D--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ S ++ + T + + D+ +R Sbjct: 68 TYVKDNDELTEEHSSIKTILTLLRTRESKDTELALKILTDIFMR 111 >gi|300691939|ref|YP_003752934.1| transcription regulator protein [Ralstonia solanacearum PSI07] gi|299078999|emb|CBJ51660.1| putative transcription regulator protein [Ralstonia solanacearum PSI07] Length = 113 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR++ R SQE L + + E+G+ L +I L +S F Sbjct: 24 LGKRVKQCRHAADKSQETLAFEAHVDRTYISSIERGIANPSVETLANICHCLGVTLSELF 83 >gi|227545435|ref|ZP_03975484.1| ABC superfamily ATP binding cassette transporter ATPase [Lactobacillus reuteri CF48-3A] gi|300908481|ref|ZP_07125944.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus reuteri SD2112] gi|227184576|gb|EEI64647.1| ABC superfamily ATP binding cassette transporter ATPase [Lactobacillus reuteri CF48-3A] gi|300893888|gb|EFK87246.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus reuteri SD2112] Length = 293 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 29/80 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R +SQ +L L + Q V K+E G +L +++V + Sbjct: 7 HQLLKLRTEKQLSQAELATRLFVPRQAVSKWENGDAEPSIDKLILLAKVFNVSLDRLILG 66 Query: 77 SPTVCSDISSEENNVMDFIS 96 + + N V F S Sbjct: 67 TNDFNQPVVKLNNIVKTFNS 86 >gi|254386053|ref|ZP_05001368.1| UDP-N-acetylglucosamine transferase [Streptomyces sp. Mg1] gi|194344913|gb|EDX25879.1| UDP-N-acetylglucosamine transferase [Streptomyces sp. Mg1] Length = 509 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L + LG + V + E+G + + I E L Sbjct: 1 MADDYLVRIGKLIRDARQHRGWTQSQLADALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|187924674|ref|YP_001896316.1| anaerobic benzoate catabolism transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187715868|gb|ACD17092.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia phytofirmans PsJN] Length = 374 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 3/118 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P +G+R+RL R GM+++ L G++ + + E GV L+ I+ L Sbjct: 82 DPFLTAMGERVRLLRARRGMTRKTLAAETGLSERHLANLESGVGNASVLVLRQIAGTLNC 141 Query: 69 PISFFFDVSPTVCSD---ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 ++ T ++ I + L F Q R+ I L+ Sbjct: 142 SLAEVIGDETTASAEWLLIRELLQGRDQAALQRARVALAEMFAQAPRDPHRKDRIALI 199 >gi|167841007|ref|ZP_02467691.1| DNA-binding protein [Burkholderia thailandensis MSMB43] Length = 194 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 30/89 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 13 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 + +++ QL Sbjct: 73 AQPKAPETIRVDGPHDIPTLAGHDAQYQL 101 >gi|166032986|ref|ZP_02235815.1| hypothetical protein DORFOR_02707 [Dorea formicigenerans ATCC 27755] gi|225028332|ref|ZP_03717524.1| hypothetical protein EUBHAL_02604 [Eubacterium hallii DSM 3353] gi|166027343|gb|EDR46100.1| hypothetical protein DORFOR_02707 [Dorea formicigenerans ATCC 27755] gi|224954378|gb|EEG35587.1| hypothetical protein EUBHAL_02604 [Eubacterium hallii DSM 3353] Length = 152 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 40/94 (42%), Gaps = 1/94 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFF 74 G+++R R MSQ++L +G++++ ++ +E + L +++ L+ +S+ Sbjct: 17 GEKVRSLRKEKKMSQQELASMVGVSYRTIRSWEVEGRFPKQNVLYQKLADALQCDVSYLM 76 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 ++ S + N + Q F Sbjct: 77 SEDEAFITEASEQFGNRGAKQAQQILEQAAAMFA 110 >gi|5852826|gb|AAD54225.1|AF143443_4 MesF [Leuconostoc mesenteroides] gi|30909074|gb|AAP37399.1| MesF [Leuconostoc mesenteroides subsp. mesenteroides] Length = 87 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R + +SQ KLG+ L + V YE G L IS++L+ I Sbjct: 26 IGPNLKKYRKLANISQFKLGQLLNVNQVTVSHYESGQRVPDIDSLIKISDILDVDIKDIL 85 Query: 75 D 75 Sbjct: 86 S 86 >gi|323691518|ref|ZP_08105787.1| hypothetical protein HMPREF9475_00649 [Clostridium symbiosum WAL-14673] gi|323504412|gb|EGB20205.1| hypothetical protein HMPREF9475_00649 [Clostridium symbiosum WAL-14673] Length = 136 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R GM+Q +L E +G+T + V K+E+ + + L ++ + + Sbjct: 7 GMLIAEYRKEKGMTQLELAEKMGVTDKAVSKWERDLLYPDVNSLPKLAGIFGISVDQLMQ 66 Query: 76 VSPTVCSDISSEENNVMDFI 95 + N + I Sbjct: 67 IKTNDGPVNDRPVANRIIPI 86 >gi|311031859|ref|ZP_07709949.1| transcriptional regulator SinR [Bacillus sp. m3-13] Length = 124 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 1/90 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+R++ R + G S +L E G++ + E+ L I+ LE+ + F Sbjct: 1 MLGERLKRLRKVKGYSLSELSELAGVSKSYLSYLERNIQTNPSLQFLNKIAVTLETDLDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + + + + Sbjct: 61 LLNGESDNDKPDVQVLDEEWRRLVQRAIAE 90 >gi|295700669|ref|YP_003608562.1| XRE family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439882|gb|ADG19051.1| transcriptional regulator, XRE family [Burkholderia sp. CCGE1002] Length = 215 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 36/97 (37%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R M+ + L G++ + + E+ + ++ L + F Sbjct: 38 VGEQIQRLRAERRMTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGVSLDSLF 97 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P I+ + + +S + R + I+ Sbjct: 98 A-PPKSPEAIAVSGPHDIPTLSGHEAKYQLRVWGPIE 133 >gi|268611394|ref|ZP_06145121.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 78 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R M+Q + + L + Q +YE + L ++E ++ + + ++ Sbjct: 8 RIRDLREDNDMTQAAMAKILRCSQQTYSRYESHTTEIPLESLIALAEYYDTSVDYLLGIT 67 Query: 78 P 78 Sbjct: 68 D 68 >gi|260583645|ref|ZP_05851393.1| prophage Sa05, DNA-binding protein [Granulicatella elegans ATCC 700633] gi|260158271|gb|EEW93339.1| prophage Sa05, DNA-binding protein [Granulicatella elegans ATCC 700633] Length = 133 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 32/82 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R +SQE+L + +G + V +E G + +L +S+ I + Sbjct: 4 GYLLSELRREKRLSQEELAKIIGTSQSSVGHWESGRRNIPQDKLLQLSKYFNVSIDYLLG 63 Query: 76 VSPTVCSDISSEENNVMDFIST 97 +S + +N ++ Sbjct: 64 ISKSRKKYYDLSRDNNFCIVNR 85 >gi|261208045|ref|ZP_05922720.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289565524|ref|ZP_06445972.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|294615155|ref|ZP_06695039.1| transcriptional regulator, xre family [Enterococcus faecium E1636] gi|314938404|ref|ZP_07845695.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314942329|ref|ZP_07849177.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314951463|ref|ZP_07854513.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314993126|ref|ZP_07858512.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314996009|ref|ZP_07861087.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|260077629|gb|EEW65345.1| helix-turn-helix domain-containing protein [Enterococcus faecium TC 6] gi|289162722|gb|EFD10574.1| helix-turn-helix domain-containing protein [Enterococcus faecium D344SRF] gi|291591975|gb|EFF23600.1| transcriptional regulator, xre family [Enterococcus faecium E1636] gi|313589763|gb|EFR68608.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313592366|gb|EFR71211.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313596420|gb|EFR75265.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313598946|gb|EFR77791.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313642302|gb|EFS06882.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 111 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 4/104 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR +R LG +Q++L E + T Q V ++E V L +S L +P+S F D Sbjct: 10 IREKRKALGWTQKELAEKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD--- 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIE 121 V D E + +ST D ++ Y + R ++++ Sbjct: 67 NVVVDYEEEFLALYRSLSTEDVVRTIDYMKLLKRQENERNQLLK 110 >gi|166030371|ref|ZP_02233200.1| hypothetical protein DORFOR_00032 [Dorea formicigenerans ATCC 27755] gi|166029840|gb|EDR48597.1| hypothetical protein DORFOR_00032 [Dorea formicigenerans ATCC 27755] Length = 159 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 31/68 (45%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + V K + R ++Q++L E LG+ + +E GVN + L I ++ Sbjct: 1 MSDNIKETVAKNLLYYRKKNKITQKELAEKLGVKHNAISSWENGVNSIDIDTLFQICKIF 60 Query: 67 ESPISFFF 74 ++ + Sbjct: 61 GISVNDMY 68 >gi|91780911|ref|YP_556118.1| anaerobic benzoate catabolism transcriptional regulator [Burkholderia xenovorans LB400] gi|91693571|gb|ABE36768.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia xenovorans LB400] Length = 315 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 3/118 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P +G+R+RL R GM+++ L G++ + + E GV L+ I+ L Sbjct: 23 DPFLTAMGERVRLLRARRGMTRKTLATETGLSERHLANLESGVGNASVLVLRQIASTLNC 82 Query: 69 PISFFFDVSPTVCSD---ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 P++ T ++ I + + L F Q R+ I L+ Sbjct: 83 PLAEVIGDETTASAEWLLIRELLHGRDQAALQRARVALAEMFAQAPRDPHRKDRIALI 140 >gi|89896129|ref|YP_519616.1| hypothetical protein DSY3383 [Desulfitobacterium hafniense Y51] gi|89335577|dbj|BAE85172.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 169 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 1/79 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI+ R +S L I+ + + E G A + IS Sbjct: 37 KALGTRIKQLRKNGKLSLADLSRHLPSISRANLGRIENGEVMPSAIFIYEISSFFNVSAD 96 Query: 72 FFFDVSPTVCSDISSEENN 90 + + + E+ Sbjct: 97 WLLTGNTPALPIYLNAEHE 115 >gi|69245861|ref|ZP_00603678.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|256853748|ref|ZP_05559113.1| helix-turn-helix domain-containing protein [Enterococcus faecalis T8] gi|257879178|ref|ZP_05658831.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257882003|ref|ZP_05661656.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257890008|ref|ZP_05669661.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|258615576|ref|ZP_05713346.1| XRE family transcriptional regulator [Enterococcus faecium DO] gi|260560175|ref|ZP_05832352.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|294620832|ref|ZP_06700036.1| transcriptional regulator, xre family [Enterococcus faecium U0317] gi|314947724|ref|ZP_07851131.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|68195563|gb|EAN10005.1| Helix-turn-helix motif [Enterococcus faecium DO] gi|256710691|gb|EEU25734.1| helix-turn-helix domain-containing protein [Enterococcus faecalis T8] gi|257813406|gb|EEV42164.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,230,933] gi|257817661|gb|EEV44989.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,502] gi|257826368|gb|EEV52994.1| helix-turn-helix domain-containing protein [Enterococcus faecium 1,231,410] gi|260073742|gb|EEW62067.1| helix-turn-helix domain-containing protein [Enterococcus faecium C68] gi|291599617|gb|EFF30630.1| transcriptional regulator, xre family [Enterococcus faecium U0317] gi|313645704|gb|EFS10284.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|315030235|gb|EFT42167.1| helix-turn-helix protein [Enterococcus faecalis TX4000] gi|315144772|gb|EFT88788.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315158697|gb|EFU02714.1| helix-turn-helix protein [Enterococcus faecalis TX0312] Length = 111 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 2/103 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 10 IREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLDNVD 69 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + + + + + R ++++ Sbjct: 70 IDYEEEFLALYRSLSTEDAIRTIDYMKLLKR--QENERNQLLK 110 >gi|322386886|ref|ZP_08060510.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269168|gb|EFX52104.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 65 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+++ R M+Q L + +G+T Q + E G S I + L + F Sbjct: 6 RLKMARAEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLFWEE 65 >gi|310640786|ref|YP_003945544.1| transcriptional regulator, xre family [Paenibacillus polymyxa SC2] gi|309245736|gb|ADO55303.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2] Length = 127 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 6/127 (4%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D + +RI GM+++ E L I+ + + +G G + L IS+ + Sbjct: 3 DQTIYQRIEALIKDRGMTKKAFCEKLKISSGNLGDWRRGKTTPGTAHLIQISDFFNVSLD 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + ++ + P LN ++ + + I+E V K Sbjct: 63 WLMKGIKPGEGVLQEQKAAYFFGVMGP----LNCQAEDLETEE-QNFILEYVE-FAKYRK 116 Query: 132 KYRTIEE 138 + R ++ Sbjct: 117 QKREKDK 123 >gi|309803453|ref|ZP_07697547.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|309805571|ref|ZP_07699615.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|312870937|ref|ZP_07731042.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|312872150|ref|ZP_07732223.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|325913375|ref|ZP_08175742.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|308164462|gb|EFO66715.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 11V1-d] gi|308165110|gb|EFO67349.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|311092234|gb|EFQ50605.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2062A-h1] gi|311093627|gb|EFQ51966.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 3008A-a] gi|325477301|gb|EGC80446.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] Length = 105 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 31/83 (37%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G I+ R ++Q +L G + +E G + + ++ L Sbjct: 1 MNNILGSVIKEIRKDKKITQSELARLTGFKQNTISNHENGKRSLDECDIYTYAKALNVSP 60 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 FFD DI S N + D Sbjct: 61 QTFFDKYTNQDKDILSIYNQLHD 83 >gi|325679879|ref|ZP_08159448.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108317|gb|EGC02564.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 119 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 45/111 (40%), Gaps = 4/111 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+RI+ R L +SQ +L E I+ + K E G + G S L ISE L+ Sbjct: 9 IPIGERIKQARKELDISQTELAERADISVPYLSKIEMGKSDFGVSVLIRISEALQISTDK 68 Query: 73 FFDVSPTVCSDISSEE----NNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + I++++ + + ++ + + + KI Sbjct: 69 LLRPDIPETTIIAADDLSKVLDGCTPVEKASIIETAKNMRKAFTEAKKNKI 119 >gi|255692636|ref|ZP_05416311.1| DNA-binding protein [Bacteroides finegoldii DSM 17565] gi|260621612|gb|EEX44483.1| DNA-binding protein [Bacteroides finegoldii DSM 17565] Length = 191 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG++I+ R ++ E+L + G+ +Q+++ E ++ + L I+ VL + Sbjct: 5 KIVGEKIKALREDKTITIEELAQRSGLAIEQIERIENNIDIPSLAPLIKIARVLGVRLGT 64 Query: 73 FFDVSPT------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F D + + + I + ++ + D + II+++ Sbjct: 65 FLDDQDEVGPVVCRKKEAKDAISFSNNAIHSRKHMEYHSLSKSKADRHMEPFIIDVM 121 >gi|220905587|ref|YP_002480899.1| XRE family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869886|gb|ACL50221.1| transcriptional regulator, XRE family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 189 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 25/67 (37%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P +G RIR R + E L + G+ +QK E LQ ++ L Sbjct: 2 PAARTIGSRIRAFREEREVDLETLAQNTGLDQCYLQKLESDTIYPSIGPLQKVARALGVR 61 Query: 70 ISFFFDV 76 + F D Sbjct: 62 LGTFLDD 68 >gi|154498983|ref|ZP_02037361.1| hypothetical protein BACCAP_02975 [Bacteroides capillosus ATCC 29799] gi|257440105|ref|ZP_05615860.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|261366750|ref|ZP_05979633.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|332655489|ref|ZP_08421223.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|150271823|gb|EDM99049.1| hypothetical protein BACCAP_02975 [Bacteroides capillosus ATCC 29799] gi|257197457|gb|EEU95741.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|282571577|gb|EFB77112.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|295101293|emb|CBK98838.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] gi|332515590|gb|EGJ45205.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 142 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFF 74 G++ + R ++Q+++ + LGI + + +YE G++ I+E + +++ Sbjct: 4 GEKFKAEREKRKLTQQEVADALGINRRMITRYENGISFPRTKDAYRKIAEYFKVDVNYLL 63 Query: 75 DVSPTVCSDISS 86 S Sbjct: 64 TEDEEFVVQASE 75 >gi|70729712|ref|YP_259451.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68344011|gb|AAY91617.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 182 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 3/102 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++L R +SQ +L G+T + E+ S L+ + E + ++ FF Sbjct: 4 GTRLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSVSSLKKLLEGIPMSLADFFT 63 Query: 76 VS-PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 P N D DGL+L + + ++R Sbjct: 64 FDQPPREHQYVFRANEQPDLG--RDGLRLLMIGAPVANRQMR 103 >gi|15838590|ref|NP_299278.1| PbsX family transcriptional regulator [Xylella fastidiosa 9a5c] gi|28198718|ref|NP_779032.1| PbsX family transcriptional regulator [Xylella fastidiosa Temecula1] gi|71275869|ref|ZP_00652153.1| Helix-turn-helix motif [Xylella fastidiosa Dixon] gi|71899365|ref|ZP_00681525.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1] gi|170730146|ref|YP_001775579.1| XRE family transcriptional regulator [Xylella fastidiosa M12] gi|182681410|ref|YP_001829570.1| XRE family transcriptional regulator [Xylella fastidiosa M23] gi|9107109|gb|AAF84798.1|AE004019_4 transcriptional regulator (PbsX family) [Xylella fastidiosa 9a5c] gi|28056809|gb|AAO28681.1| transcriptional regulator PbsX family [Xylella fastidiosa Temecula1] gi|71163447|gb|EAO13165.1| Helix-turn-helix motif [Xylella fastidiosa Dixon] gi|71730879|gb|EAO32950.1| Helix-turn-helix motif [Xylella fastidiosa Ann-1] gi|167964939|gb|ACA11949.1| putative transcriptional regulator, XRE family [Xylella fastidiosa M12] gi|182631520|gb|ACB92296.1| transcriptional regulator, XRE family [Xylella fastidiosa M23] Length = 126 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 5/111 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFFD 75 +R+R R + ++QE L LG+T V ++E + L ++ + Sbjct: 8 ERVREARNLCSLTQEALASDLGVTRSAVAQWEMEQGTKPSVENLIALARRTGMAFEYLST 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ---LNRYFIQIDDVKVRQKIIELV 123 + Q L F ++ + R ++EL+ Sbjct: 68 GRGKPDCGKPISSISEPTPTYQKFDSQQKLLLEQFAKLT-PRQRSGLLELL 117 >gi|313892448|ref|ZP_07826038.1| peptidase S24-like protein [Dialister microaerophilus UPII 345-E] gi|313119130|gb|EFR42332.1| peptidase S24-like protein [Dialister microaerophilus UPII 345-E] Length = 218 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 45/112 (40%), Gaps = 3/112 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEV 65 + N ++ +G+RIR R ++ ++ +G++ VQ+YE G A ++V Sbjct: 1 MYNNINKEIGQRIRKTRKANKLTLLEVAHKMGLSEGNVQRYEIGKIENFALSTLTKFAKV 60 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFIS--TPDGLQLNRYFIQIDDVKV 115 L + S + + V + +S P+ + + +I V Sbjct: 61 LNTTPEELLGWVDKEDVTNSFDYSYVDEPVSAGLPENINAIKNLPKIPIADV 112 >gi|303239088|ref|ZP_07325618.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302593426|gb|EFL63144.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 67 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ VG+ IR R MSQE+L G T + + + E G L +I+ L+ P Sbjct: 2 PIRKEVGQNIRKERDRKRMSQEELAGLAGTTQEYISRIENGTRNPSMDLLYNIAGALKCP 61 Query: 70 ISFF 73 + Sbjct: 62 VKRL 65 >gi|302385132|ref|YP_003820954.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302195760|gb|ADL03331.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 174 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R LG+SQE+ G+ L +T + K E G+N ++ I + Sbjct: 3 NRIKEVRKKLGLSQEEFGKRLRVTKTSISKIEAGINNPSDQTIKLICSEFSVNEEWLRTG 62 Query: 77 SPTVCSDISSEENNVMD 93 + + SE+ + Sbjct: 63 AGGQDNMFLSEDVKYIQ 79 >gi|323343170|ref|ZP_08083401.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463234|gb|EFY08429.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 127 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 11/119 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R+ ++Q +L + + + Q V K+E G++ S L I E L + Sbjct: 4 ANLKKIRLKRKLTQRELAKRVNYSQQAVAKWEVGISNPDISNLVKICEELNISVECLLCQ 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI-------DDVKVRQKIIELVRSIVS 128 P E + ++ L L +I D+ + I +LV + Sbjct: 64 KPKHMQ----EFDEWSLHLAFYHVLNLCGTHHEIGLDIRDLDEENKIRLINDLVMFLRK 118 >gi|304317116|ref|YP_003852261.1| XRE family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778618|gb|ADL69177.1| transcriptional regulator, XRE family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 268 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 51/139 (36%), Gaps = 5/139 (3%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+ + V N+G +R + ++ ++ E + +T V KY G + ++ ++E Sbjct: 3 KLHDKVAANIGAVLRQLKERNNVTIHQIAEAVNVTDGAVAKYLSGERKPNKQVIKRLAEF 62 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 F + + + + ++ ++ L + KV++ I +L + Sbjct: 63 FHVDQKVFAGTDDDIINIALEQYTSAVNQLN-----ALKESIAEAPLNKVQEYINQLKEA 117 Query: 126 IVSSEKKYRTIEEECMVEQ 144 +K + + Sbjct: 118 SNEVDKAKEALHSLLQSSK 136 >gi|228952839|ref|ZP_04114909.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806882|gb|EEM53431.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 292 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ F Sbjct: 6 LGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYIF 64 Query: 75 DVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + D + +L + + + Sbjct: 65 ALTKNKKIKYIENVKCVMRDCVKQKQYNELYKIVKKEKNDN 105 >gi|228966939|ref|ZP_04127977.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] gi|228792673|gb|EEM40237.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar sotto str. T04001] Length = 114 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 30/80 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R ++Q + GE + ++ QV E N+ L I+ L + Sbjct: 5 GQNLKKFRSSRSLTQSEFGERVQLSRSQVGNLEINYNQPDLDTLDRIATYLGVSVDALMG 64 Query: 76 VSPTVCSDISSEENNVMDFI 95 + T + + + + Sbjct: 65 RTSTPHEKNIANALDEIQTV 84 >gi|228942395|ref|ZP_04104933.1| Transcription regulator, probable-related protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228981964|ref|ZP_04142258.1| Transcription regulator, probable-related protein [Bacillus thuringiensis Bt407] gi|228777725|gb|EEM25998.1| Transcription regulator, probable-related protein [Bacillus thuringiensis Bt407] gi|228817236|gb|EEM63323.1| Transcription regulator, probable-related protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 68 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 7 NNVKQYRKSEGLSQLELAKKINVARQTINLIENNKYNPSLALCIELAKALKTDLNSLFWE 66 Query: 77 SP 78 Sbjct: 67 GD 68 >gi|229091875|ref|ZP_04223064.1| transcriptional regulator/TPR domain protein [Bacillus cereus Rock3-42] gi|228691455|gb|EEL45214.1| transcriptional regulator/TPR domain protein [Bacillus cereus Rock3-42] Length = 433 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 3/100 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G+RIR RM G++Q +L + + + + E G + +S ++ +S+ LE Sbjct: 10 NMEIGERIRHVRMHKGLTQGELVSGI-CSITYLSRIESGKIKPSSSFIKKVSKKLEVKSD 68 Query: 72 FFFDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQ 109 + + + + D T L L +++ Sbjct: 69 YLINGNYEEIKLTIFKICNKYKKDKSITEADLSLLELYVR 108 >gi|212633085|ref|YP_002309610.1| Cro/CI family transcriptional regulator [Shewanella piezotolerans WP3] gi|212554569|gb|ACJ27023.1| Transcriptional regulator, Cro/CI family [Shewanella piezotolerans WP3] Length = 69 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R +Q L + L ++ Q + EKG ++ + + PI F+ Sbjct: 3 NRLKILRAERDWTQADLADKLEVSRQTINAIEKGKYDPSLPLAFKVARLFQIPIEAIFED 62 Query: 77 SPT 79 Sbjct: 63 EAE 65 >gi|210608450|ref|ZP_03287826.1| hypothetical protein CLONEX_00005 [Clostridium nexile DSM 1787] gi|210153061|gb|EEA84067.1| hypothetical protein CLONEX_00005 [Clostridium nexile DSM 1787] Length = 157 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL+ + Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNEL 69 Query: 74 FDVS 77 Sbjct: 70 LSGE 73 >gi|170759644|ref|YP_001785784.1| hypothetical protein CLK_3646 [Clostridium botulinum A3 str. Loch Maree] gi|169406633|gb|ACA55044.1| conserved domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 65 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+I++ R+ MSQE+L + +G+ Q + E G + I +VL ++ F Sbjct: 4 KKIKIARIECDMSQEQLADAVGVARQTIGLIEAGKYNPSLNLCISICKVLNKTLNDLFWE 63 Query: 77 S 77 Sbjct: 64 E 64 >gi|167758839|ref|ZP_02430966.1| hypothetical protein CLOSCI_01182 [Clostridium scindens ATCC 35704] gi|167663579|gb|EDS07709.1| hypothetical protein CLOSCI_01182 [Clostridium scindens ATCC 35704] Length = 350 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 34/74 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR RR + ++QE++ LG++ V K+E G + + L ++ +L + ++ Sbjct: 1 MKINEMIRTRRKEMNLTQEQVASRLGVSAPAVHKWETGNSYPDITLLPALARLLGTDLNT 60 Query: 73 FFDVSPTVCSDISS 86 + Sbjct: 61 LLSFQEDLSRQEVD 74 >gi|20091114|ref|NP_617189.1| transcriptional regulator [Methanosarcina acetivorans C2A] gi|19916214|gb|AAM05669.1| transcriptional regulator, Hth-3 family [Methanosarcina acetivorans C2A] Length = 79 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 26/65 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R ++QE L + +G+ + V EKG I+ L++ + F Sbjct: 15 RIKEFRARHDLTQEALAKIVGVRRETVVFLEKGKYNPSLKLAYRIARALDTTLDELFIFE 74 Query: 78 PTVCS 82 + Sbjct: 75 DSDFE 79 >gi|315647016|ref|ZP_07900129.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315277218|gb|EFU40547.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 181 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 32/87 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R+ ++ +++ + I+ + + E+ S L+ I+ L + F Sbjct: 4 IGEVIRNTRIKQKLTLKEVAKAGSISLSFLSEIERDKANPSISVLKRIANALNVNFTDLF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 +E ++ + Sbjct: 64 GEKEQSIVVRKNERKPLLHSEGSRITW 90 >gi|313886599|ref|ZP_07820312.1| DNA-binding helix-turn-helix protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923955|gb|EFR34751.1| DNA-binding helix-turn-helix protein [Porphyromonas asaccharolytica PR426713P-I] Length = 363 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 15/116 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR R + GM+ +L + +G++ + E+G + + L +SE L+ PI +F Sbjct: 14 GERIRKGRALRGMTLRELADKVGVSHTHISNLERGGKEITGATLIALSEALDLPIDYFV- 72 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 I + + F +D K+ QKI + + + E+ Sbjct: 73 --------------YQDTPIIESVNFRKIKAFSSKEDKKIWQKIERQLENYLELEE 114 >gi|310826476|ref|YP_003958833.1| hypothetical protein ELI_0858 [Eubacterium limosum KIST612] gi|308738210|gb|ADO35870.1| hypothetical protein ELI_0858 [Eubacterium limosum KIST612] Length = 148 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G + R G+SQE++ E LG++ Q + K+E + + ++++ + Sbjct: 1 MTLGNSLYKARKRTGLSQEEVAEKLGVSRQTISKWETNETLPDIRQSKQMAQLYHLSLDE 60 Query: 73 FFDVSPTVCS 82 D V Sbjct: 61 LIDFDVDVKE 70 >gi|271964091|ref|YP_003338287.1| hypothetical protein Sros_2570 [Streptosporangium roseum DSM 43021] gi|270507266|gb|ACZ85544.1| hypothetical protein Sros_2570 [Streptosporangium roseum DSM 43021] Length = 430 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 1/91 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R G+SQ +L ++ V E G S L+ ++E L+ +++ Sbjct: 7 VGQRIKTVRRQRGLSQAQL-AHPELSDSYVSLIESGKRTPTPSVLELLAEKLDCSLTYLI 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + + + R Sbjct: 66 NGVTAEQMQEIELALSYAQLAMNNGEVAEAR 96 >gi|302554854|ref|ZP_07307196.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces viridochromogenes DSM 40736] gi|302472472|gb|EFL35565.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces viridochromogenes DSM 40736] Length = 509 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G+ IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MADDYLVRIGRLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|229028494|ref|ZP_04184614.1| Transcriptional regulator [Bacillus cereus AH1271] gi|228732807|gb|EEL83669.1| Transcriptional regulator [Bacillus cereus AH1271] Length = 66 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 30/63 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R+ L ++Q++L E +G+T Q + EKG I V++ ++ F Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYVVDKTLNDLFWE 63 Query: 77 SPT 79 Sbjct: 64 EEE 66 >gi|126180158|ref|YP_001048123.1| XRE family transcriptional regulator [Methanoculleus marisnigri JR1] gi|125862952|gb|ABN58141.1| transcriptional regulator, XRE family [Methanoculleus marisnigri JR1] Length = 68 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R G++QE+L + +G+ + + EKG ++ L S I F Sbjct: 4 RIRELRAKAGITQEELAQQVGVRRETIVFLEKGKYNPSLKLAYKVAHTLGSTIEEVFTFE 63 Query: 78 PTV 80 Sbjct: 64 EED 66 >gi|17545878|ref|NP_519280.1| transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17428173|emb|CAD14861.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 182 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G + E L E G+T + K E+G++ + ++ L P F Sbjct: 4 RLKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLAGALGVPAETLF-GE 62 Query: 78 PTVCSDIS 85 P S I+ Sbjct: 63 PAAASAIT 70 >gi|326802631|ref|YP_004320449.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651355|gb|AEA01538.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 69 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G+SQ+ L E +G+ Q V E +++ L++ ++ F Sbjct: 2 NRLKYYRTRSGLSQKALAEEIGVARQTVNMIENDRYNPSLELCIALAKALDTDLNALF 59 >gi|295690255|ref|YP_003593948.1| XRE family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432158|gb|ADG11330.1| transcriptional regulator, XRE family [Caulobacter segnis ATCC 21756] Length = 64 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R SQ L + L ++ Q + E G I+ + PI F Sbjct: 3 NRLKVLRAERDWSQADLADRLEVSRQTINALETGKYDPSLPLAFRIARLFGQPIEAIFQD 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|229825610|ref|ZP_04451679.1| hypothetical protein GCWU000182_00972 [Abiotrophia defectiva ATCC 49176] gi|229790173|gb|EEP26287.1| hypothetical protein GCWU000182_00972 [Abiotrophia defectiva ATCC 49176] Length = 79 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGE-CLGITFQQVQKYEKGVNRVGASRLQHI 62 KK+P +D + G++I R G + +L + T Q + K++KG L + Sbjct: 2 KKLPT-IDMVKTGEKIEYLRKARGFTVSELQDCLGFNTPQSIYKWQKGKVVPTIDHLVAL 60 Query: 63 SEVLESPISFF 73 S + I Sbjct: 61 SSLFGVTIDEI 71 >gi|288572782|ref|ZP_06391139.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568523|gb|EFC90080.1| transcriptional regulator, XRE family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 148 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 34/70 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K ++ R G +Q+++ + LGI+ + Q YE G ++ +L ++++ + + Sbjct: 6 KNLKKIRKRSGFTQKQVAKHLGISERAYQHYEAGDRKISPEKLLAMAKLFQVSADYLLGN 65 Query: 77 SPTVCSDISS 86 SP + + Sbjct: 66 SPGLLKGLED 75 >gi|238855030|ref|ZP_04645359.1| SOS-response transcriptional repressor [Lactobacillus jensenii 269-3] gi|282934070|ref|ZP_06339350.1| SOS-response transcriptional repressor [Lactobacillus jensenii 208-1] gi|238832401|gb|EEQ24709.1| SOS-response transcriptional repressor [Lactobacillus jensenii 269-3] gi|281301872|gb|EFA94136.1| SOS-response transcriptional repressor [Lactobacillus jensenii 208-1] Length = 225 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K ++ R +SQ +LGE LG++ Q V +E S + +IS ++ + Sbjct: 14 LAKALKEYRKKQHISQTELGEKLGVSKQTVSYWESKKKSPKMSAVINISNLIGVSVKELM 73 Query: 75 DVSPTVCSDISS 86 + V Sbjct: 74 FGTSDVAYSNED 85 >gi|168212348|ref|ZP_02637973.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|170716147|gb|EDT28329.1| DNA-binding protein [Clostridium perfringens CPE str. F4969] Length = 348 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 11/136 (8%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ +R G++QE++ LG++ V K+EKG + L ++ +L+ ++ Sbjct: 7 IKEKRNAQGLTQEQVAMYLGVSTPAVNKWEKGTCYPDITLLPALARLLKVDLNTLLSFKE 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLN--RYFIQIDDVKVRQKII---------ELVRSIV 127 + N + I+ DG + + +I + K+I L V Sbjct: 67 DLSEQEIGVFVNELVKIANNDGFHIAFEKAMDKIYEYPTCDKLILTVSTVMQGSLYMFGV 126 Query: 128 SSEKKYRTIEEECMVE 143 S++KY EE ++ Sbjct: 127 ESKEKYEEQIEEFYIK 142 >gi|148985005|ref|ZP_01818248.1| transcriptional regulator, putative [Streptococcus pneumoniae SP3-BS71] gi|147922703|gb|EDK73820.1| transcriptional regulator, putative [Streptococcus pneumoniae SP3-BS71] gi|301800013|emb|CBW32605.1| putative epsilon antitoxin [Streptococcus pneumoniae OXC141] Length = 158 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHDLTQHEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|302549793|ref|ZP_07302135.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|51317972|gb|AAU00097.1| putative ORF192 [Streptomyces viridochromogenes] gi|302467411|gb|EFL30504.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 192 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 32/80 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R+ ++ + L + ++ + E+G L I+E L + Sbjct: 7 LGSRIQELRLSQSLTLQDLADRAAVSVSMLSSVERGRKAPTVVVLARIAEGLGVTAAHLL 66 Query: 75 DVSPTVCSDISSEENNVMDF 94 V ++E++ V + Sbjct: 67 TEPAPVRVRRAAEQDVVEEP 86 >gi|163939593|ref|YP_001644477.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861790|gb|ABY42849.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 404 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 4 LGEKIKTLRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSPTVCSDISSEENN 90 + +I + Sbjct: 63 EEDDVEIVEIIQQMEQ 78 >gi|303239261|ref|ZP_07325790.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302593306|gb|EFL63025.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 125 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 45/107 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R LG +QE+LG+ +G++ + V YE L ++++ + I + Sbjct: 3 NRIRELRKELGFTQEELGKMIGLSERSVGSYETSDRDPDTDTLNKLAQIFDCTIDYMLMR 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 S T ++ E + + ++ +VR+++ E Sbjct: 63 SNTRKTEEKKEMAEAEEMYRVDPDFLIEMCRAKVLPDEVRKRLREYA 109 >gi|291536948|emb|CBL10060.1| Predicted transcriptional regulators [Roseburia intestinalis M50/1] Length = 198 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 33/84 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ +R ++Q++ + LG + + +QKYE G + L+ I+ L P Sbjct: 16 EIGKAIQKQRRAQKITQKEFAQHLGKSERTIQKYESGEILMKIDVLKQIANELNVPWQEL 75 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 ++ T Sbjct: 76 LSPEDNNIPKDNTTTKYPAYEFHT 99 >gi|284043470|ref|YP_003393810.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947691|gb|ADB50435.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 93 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 32/75 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ +R R ++QE LG + V E+G L+ ++ L +S Sbjct: 17 VTLGRAVREIRARRSLTQEGLGRESALHRNYVGAIERGEINPTFRILRKLAAGLNVELSE 76 Query: 73 FFDVSPTVCSDISSE 87 F + CSD ++ Sbjct: 77 LFALFERRCSDAEAD 91 >gi|260662799|ref|ZP_05863693.1| predicted protein [Lactobacillus fermentum 28-3-CHN] gi|260552880|gb|EEX25879.1| predicted protein [Lactobacillus fermentum 28-3-CHN] Length = 167 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V +I+ R+ +SQE+L E ++ + +Q+ E G + L ++ L + Sbjct: 1 MVNNKIKQLRLSKNLSQEQLAEKAKVSVRTIQRMEAG-DDASIETLNLVAGALGVSVKEL 59 Query: 74 FDVSPTVCSDISSEENNVMDFISTPD 99 FD SP + I + E N+ + + Sbjct: 60 FDDSPAQKNKIRNAEENLQYQLKSRH 85 >gi|229153416|ref|ZP_04281594.1| Transcription regulator, probable-related protein [Bacillus cereus m1550] gi|228630020|gb|EEK86671.1| Transcription regulator, probable-related protein [Bacillus cereus m1550] Length = 68 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R G+SQ +L + + + Q + E + +++ LE+ ++ F Sbjct: 7 NNVKQYRKSEGLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALETDLNSLFWE 66 Query: 77 SP 78 Sbjct: 67 GD 68 >gi|254465799|ref|ZP_05079210.1| transcriptional regulator, XRE family with cupin sensor [Rhodobacterales bacterium Y4I] gi|206686707|gb|EDZ47189.1| transcriptional regulator, XRE family with cupin sensor [Rhodobacterales bacterium Y4I] Length = 188 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N + + + R++ R G+S E + G++ V + E+G + + L Sbjct: 1 MTENT---DDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLW 57 Query: 61 HISEVLESPISFFFDVSP 78 +++ L+ + + Sbjct: 58 NLTRALQVDFAGLLESGD 75 >gi|167768271|ref|ZP_02440324.1| hypothetical protein CLOSS21_02827 [Clostridium sp. SS2/1] gi|167709795|gb|EDS20374.1| hypothetical protein CLOSS21_02827 [Clostridium sp. SS2/1] Length = 84 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KRI++ R+ MSQE L + +G+T Q + E G I + L + F Sbjct: 24 KRIKIARLECDMSQEDLAKTVGVTRQTIGLIEAGNYNPTLKLCLAICKALNKTLDDLFWE 83 Query: 77 S 77 Sbjct: 84 E 84 >gi|220926724|ref|YP_002502026.1| XRE family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219951331|gb|ACL61723.1| transcriptional regulator, XRE family [Methylobacterium nodulans ORS 2060] Length = 245 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R G++ E L E G + + + + G V L ISE L+ P++ Sbjct: 16 NRIAEWREKRGLTLEALAEATGFSTGYLSRMQNGSRNVSLKNLAKISEALKVPVADLVPE 75 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 V + + + G+ F +++ Sbjct: 76 GEEVPPGGEASPIPLPKGMVRVIGIAKAGLFREVES 111 >gi|116049838|ref|YP_791355.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115585059|gb|ABJ11074.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 183 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 30/84 (35%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + +R+ R ++ +L E ++ + + E+ + AS L ++ L Sbjct: 2 DIDELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVA 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMD 93 +S + + + Sbjct: 62 LSELLGDAQAPAEPLCRRAQQEVW 85 >gi|303328373|ref|ZP_07358811.1| putative DNA-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302861703|gb|EFL84639.1| putative DNA-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 122 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 38/111 (34%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N + + +G+RI+ R ++ +L G+ + E G R+ Sbjct: 1 MAKNSYKESEELLRIGERIKRFREQADLTLAELSRLSGVPANTISNIEHGRENPSYYRIF 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 I + + PIS + +I E + + F Q+D Sbjct: 61 DIYKGVGLPISLVVQIDDGSPREIRQESTKELIRFLKKASDEERLKFQQMD 111 >gi|302331894|gb|ADL22087.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 391 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE S++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|257866766|ref|ZP_05646419.1| helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC30] gi|257872717|ref|ZP_05652370.1| helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC10] gi|257800724|gb|EEV29752.1| helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC30] gi|257806881|gb|EEV35703.1| helix-turn-helix domain-containing protein [Enterococcus casseliflavus EC10] Length = 260 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLES 68 P I VG RI R LG++ ++ G + V +E G N ++ I+++ + Sbjct: 3 PDAIKVGSRINFIRKKLGLTMQEFGHKVSNSPRSTVSTWEHGGNLPSKEKMSQIAKLGQV 62 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 + + ++IS + Sbjct: 63 NEDWIKWGDFEEYINEYISFLGYSNYISNRQYI 95 >gi|229606284|ref|YP_002876932.1| hypothetical protein VCD_001187 [Vibrio cholerae MJ-1236] gi|229607600|ref|YP_002878248.1| hypothetical protein VCD_002512 [Vibrio cholerae MJ-1236] gi|229607707|ref|YP_002878355.1| hypothetical protein VCD_002619 [Vibrio cholerae MJ-1236] gi|229608129|ref|YP_002878777.1| hypothetical protein VCD_003047 [Vibrio cholerae MJ-1236] gi|229368939|gb|ACQ59362.1| hypothetical protein VCD_001187 [Vibrio cholerae MJ-1236] gi|229370255|gb|ACQ60678.1| hypothetical protein VCD_002512 [Vibrio cholerae MJ-1236] gi|229370362|gb|ACQ60785.1| hypothetical protein VCD_002619 [Vibrio cholerae MJ-1236] gi|229370784|gb|ACQ61207.1| hypothetical protein VCD_003047 [Vibrio cholerae MJ-1236] Length = 69 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI R G++Q+KL I V + E+G + +L I+E L Sbjct: 9 VGKRIAKMRKSKGLTQDKLALFAEIDRSYVGRIERGEVNITIEKLYEIAETLGCDAKELL 68 >gi|229000137|ref|ZP_04159707.1| hypothetical protein bmyco0003_46900 [Bacillus mycoides Rock3-17] gi|229007658|ref|ZP_04165251.1| hypothetical protein bmyco0002_45370 [Bacillus mycoides Rock1-4] gi|228753609|gb|EEM03054.1| hypothetical protein bmyco0002_45370 [Bacillus mycoides Rock1-4] gi|228759674|gb|EEM08650.1| hypothetical protein bmyco0003_46900 [Bacillus mycoides Rock3-17] Length = 296 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 4/103 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ RM+ G++Q++L + + +V + E G LQ I+ L PI F+ Sbjct: 6 LGAEIKKIRMLRGLTQKQLSDNI-CHQSEVSRIEAGSVYPSMDILQGIAAKLRVPIIHFY 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 +V + + + + +S +I ++++ Sbjct: 65 EVLIYSDIERKKQFKDQIQLLSKKKRYD---EIHKIVSEELKK 104 >gi|257065740|ref|YP_003151996.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256797620|gb|ACV28275.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 129 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/123 (10%), Positives = 43/123 (34%), Gaps = 5/123 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFFD 75 +++ R I ++QE L + ++ + + +YE G ++ + +++ L++ + Sbjct: 5 NKVKELREIKKLTQEDLAKLCNVSTKTISRYELGESKPRYRKTYDLLAKHLDTTHDYLVT 64 Query: 76 VSPTVCSDISSEENNVMDFISTPD--GLQLNRYFIQIDDVKVRQKIIELVRS--IVSSEK 131 + G+ ++ + R + + + I E Sbjct: 65 DEDEFILKARENFGEGGAKDAQDMINGVIGLMAGGELPEDDKRAILDAISEAYYIAKMEN 124 Query: 132 KYR 134 + + Sbjct: 125 EKK 127 >gi|227534620|ref|ZP_03964669.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187721|gb|EEI67788.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 277 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN +G I+ R M+Q L GI + +E + + + ++ L Sbjct: 1 MPNKSANILGPVIKELRKQKKMTQADLSRITGIAQNTISNHENQNRALDENSIIKYAKAL 60 Query: 67 ESPISFFFD 75 +D Sbjct: 61 GVTPQALYD 69 >gi|300774480|ref|ZP_07084343.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300506295|gb|EFK37430.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 209 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 21/61 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I+ R + G+SQ+ + + + YE+G + ++ + Sbjct: 5 GTNIKKIRQVKGLSQKAFADLFDLNRGVISSYEEGRAEPKIETILKVASHFNLNLDQLLT 64 Query: 76 V 76 Sbjct: 65 E 65 >gi|217967677|ref|YP_002353183.1| XRE family transcriptional regulator [Dictyoglomus turgidum DSM 6724] gi|217336776|gb|ACK42569.1| transcriptional regulator, XRE family [Dictyoglomus turgidum DSM 6724] Length = 110 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 33/66 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +R++ R G+++++L +G++ + +YE+ + L+ ISEVL+ I + Sbjct: 8 KIISERLKEVREKRGLTKKELALKIGVSPSTITRYEEEGRVPKLTILKRISEVLDVSIDY 67 Query: 73 FFDVSP 78 Sbjct: 68 LLGKEE 73 >gi|168494718|ref|ZP_02718861.1| transcriptional activator [Streptococcus pneumoniae CDC3059-06] gi|183575348|gb|EDT95876.1| transcriptional activator [Streptococcus pneumoniae CDC3059-06] Length = 287 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + S++S+ + + + L + Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYDDLEYIYR 96 >gi|156936528|ref|YP_001440443.1| hypothetical protein ESA_pESA2p06574 [Cronobacter sakazakii ATCC BAA-894] gi|260585153|ref|YP_003212727.1| hypothetical protein Ctu_2p00150 [Cronobacter turicensis z3032] gi|156534782|gb|ABU79607.1| hypothetical protein ESA_pESA2p06574 [Cronobacter sakazakii ATCC BAA-894] gi|260219335|emb|CBA34688.1| hypothetical protein Ctu_2p00150 [Cronobacter turicensis z3032] Length = 118 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 49/117 (41%), Gaps = 7/117 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLESP 69 V KR++ R G+SQEKL + + + ++ YE G + +++ L P Sbjct: 1 MVPKRLKEAREAAGISQEKLAQLVDLESVNSRSKISNYEAGRFAPSFEFVCRVAKALGYP 60 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +F+ VS + + + ++ + Q+DD VR+ + EL + Sbjct: 61 EYYFYTVSDATAQILLQQHREGFH-LQEGIAGEVQKMAEQLDD--VRKLVAELNECL 114 >gi|148998484|ref|ZP_01825925.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP11-BS70] gi|168576644|ref|ZP_02722510.1| transcriptional activator [Streptococcus pneumoniae MLV-016] gi|307068564|ref|YP_003877530.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|147755677|gb|EDK62723.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP11-BS70] gi|183577638|gb|EDT98166.1| transcriptional activator [Streptococcus pneumoniae MLV-016] gi|306410101|gb|ADM85528.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] Length = 287 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + S++S+ + + + L + Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYDDLEYIYR 96 >gi|126464104|ref|YP_001045217.1| XRE family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|332557508|ref|ZP_08411830.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] gi|126105915|gb|ABN78445.1| transcriptional regulator, XRE family [Rhodobacter sphaeroides ATCC 17029] gi|332275220|gb|EGJ20535.1| XRE family transcriptional regulator [Rhodobacter sphaeroides WS8N] Length = 115 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 6/104 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++QE+L E +G + + + E G L+ + +E P+ + Sbjct: 4 RLKELRKAKNLTQEQLAEMVGSSKSYISEIESGKKFPSGRLLKAFAHTMEVPVQALIEDD 63 Query: 78 PTVCS-----DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + + L + Q+ + R Sbjct: 64 QAGTDLMAHLEVMRDLPEHDQKAVIRHAIGLLEH-AQLSPPEPR 106 >gi|157961825|ref|YP_001501859.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157846825|gb|ABV87324.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] Length = 511 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 7/88 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRV 54 + N + +G +IR R ++ E L + E+G Sbjct: 1 MKNNQSLIRKSHFLGTKIRNLRKRNHLTMEDLSARCVRVDPESAPSVSYLSMIERGKRVP 60 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCS 82 A L I+ V + + +F D P + Sbjct: 61 SAGMLAVIAAVFQKELDWFLDDVPEDDA 88 >gi|326385587|ref|ZP_08207221.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326209921|gb|EGD60704.1| transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 227 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 2/76 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++ P G +R R LG++ +G GI + K E + ++ Sbjct: 5 MASRREDPET--ARFGHILRDLRTRLGLTLNDVGLKTGIPRSTLSKIENDKMSLSYDKIV 62 Query: 61 HISEVLESPISFFFDV 76 IS L IS F Sbjct: 63 KISSALNVDISELFGG 78 >gi|262046886|ref|ZP_06019846.1| predicted protein [Lactobacillus crispatus MV-3A-US] gi|260572868|gb|EEX29428.1| predicted protein [Lactobacillus crispatus MV-3A-US] Length = 74 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R ++Q +L E +G + + +YE G++ RL I+ L + + Sbjct: 10 GKRLMRARKNRQLTQVQLAERIGASTTTISRYENGLSFPSKRRLSEIAHFLGVKVDWLLT 69 Query: 76 VSPTV 80 Sbjct: 70 GFKED 74 >gi|257438941|ref|ZP_05614696.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257198619|gb|EEU96903.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 100 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 38/77 (49%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+ R + +Q+ L + LGI+ ++ +E+G + ++ L I ++ + + Sbjct: 1 MLGERLAELRKLNDDTQQTLADKLGISVWSIRAWEQGKSYPFSNVLLAICKLYGTSADYL 60 Query: 74 FDVSPTVCSDISSEENN 90 ++ SD + ++ Sbjct: 61 LGLTDIDPSDEARKQRQ 77 >gi|221069664|ref|ZP_03545769.1| transcriptional regulator, XRE family with shikimate kinase activity [Comamonas testosteroni KF-1] gi|220714687|gb|EED70055.1| transcriptional regulator, XRE family with shikimate kinase activity [Comamonas testosteroni KF-1] Length = 300 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 34/74 (45%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G++ +P+ +G+R+R R G+++ L ++ + + E G V LQ I Sbjct: 14 GDEAGKSPLLQALGERVRNLRARRGLTRRGLASAAVVSERHLANLEYGTGNVSILVLQQI 73 Query: 63 SEVLESPISFFFDV 76 ++ L+ ++ Sbjct: 74 AQALQCSMAELLGD 87 >gi|89893759|ref|YP_517246.1| hypothetical protein DSY1013 [Desulfitobacterium hafniense Y51] gi|89333207|dbj|BAE82802.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 361 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK I +R +QE+L + +G++ V K+E G + L I+ L + + F Sbjct: 6 GKVITAKRKEKSWTQEQLAQAVGVSTPAVSKWETGATYPDITLLPPIARALNTTVDELFS 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 + + S + +G Sbjct: 66 YQNELSDNDVSGFTQKATSLYEAEGFD 92 >gi|116073|sp|P23939|CEBA_BACAM RecName: Full=BamHI control element gi|1333709|emb|CAA39000.1| BamH I control element [Bacillus amyloliquefaciens] Length = 102 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 7 IPNPVDINVGKRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + N + + G+++R R+ MSQEKL + + E+G V ++ IS+ Sbjct: 22 MTNNIRLLFGQKVRQIRLSKSNMSQEKLAFECDLHRTYISDIERGTRNVSLDNIEKISKA 81 Query: 66 LESPISFFFD 75 L D Sbjct: 82 LGVQPKDLLD 91 >gi|47093401|ref|ZP_00231167.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|47018228|gb|EAL08995.1| conserved hypothetical protein [Listeria monocytogenes str. 4b H7858] gi|328466779|gb|EGF37897.1| hypothetical protein LM1816_04818 [Listeria monocytogenes 1816] Length = 309 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 6/116 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G +++ R G+S + L + I + + E+G V + +E + Sbjct: 3 ELGDKLKQARREKGLSLDDLQQVTKIQKRYLVAIEEGNYAVMPGKFYARAFIKQYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + FD + + +E + + R + +++ Sbjct: 63 LDSATLFDEFESEVPETPQQEVVNNEPTRVQSKRNPMPAQSVGNQANTRNRFFDIL 118 >gi|15597081|ref|NP_250575.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107101318|ref|ZP_01365236.1| hypothetical protein PaerPA_01002352 [Pseudomonas aeruginosa PACS2] gi|254240277|ref|ZP_04933599.1| hypothetical protein PA2G_00921 [Pseudomonas aeruginosa 2192] gi|9947875|gb|AAG05273.1|AE004614_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126193655|gb|EAZ57718.1| hypothetical protein PA2G_00921 [Pseudomonas aeruginosa 2192] Length = 183 Score = 44.4 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 30/84 (35%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + +R+ R ++ +L E ++ + + E+ + AS L ++ L Sbjct: 2 DIDELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVA 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMD 93 +S + + + Sbjct: 62 LSELLGDAQAPAEPLCRRAQQEVW 85 >gi|262067783|ref|ZP_06027395.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium periodonticum ATCC 33693] gi|291378506|gb|EFE86024.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium periodonticum ATCC 33693] Length = 143 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 12/104 (11%), Positives = 37/104 (35%), Gaps = 4/104 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RI R+ ++Q ++ + + + +E+G + LQ I + + + Sbjct: 3 EIKDRILDLRIENSLTQSQMAKIFDVGISTISMWEQGQRIPRPNTLQEICDYFNVDMDYL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 S + + + + + F ++ D ++ + Sbjct: 63 MGRSDIRNRYQAGLKYDWENKKEEKENN----IFSKLTDEELAK 102 >gi|149924529|ref|ZP_01912888.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149814622|gb|EDM74203.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 135 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 34/98 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK +R R G++QE L E ++ +++ E G + L ++ +S Sbjct: 24 GKHLRNLRNARGLTQEVLAERANLSSDTIRRLEHGTFSPTLNTLLRLASGYGLRLSTLLA 83 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + E +++ S D L + Sbjct: 84 SYEIGMLPLERELADLLIGRSEKDLRMLLEVAKVLLRD 121 >gi|153955364|ref|YP_001396129.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855783|ref|YP_002472905.1| hypothetical protein CKR_2440 [Clostridium kluyveri NBRC 12016] gi|146348222|gb|EDK34758.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569507|dbj|BAH07491.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 78 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R LG++QE+LG+ +G++ Q + E IS + I F Sbjct: 3 NRLKELRESLGLTQEQLGKLVGVSRQAINAIETEKFEPSIWLAYDISNIFNCFIEEVF 60 >gi|254224740|ref|ZP_04918356.1| hypothetical protein VCV51_A0080 [Vibrio cholerae V51] gi|125622803|gb|EAZ51121.1| hypothetical protein VCV51_A0080 [Vibrio cholerae V51] Length = 505 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G ++R R ++ E L + E+G L+ I+EV Sbjct: 13 FLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVEMLEVIAEVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + +F D P Sbjct: 73 QKDPIWFLDDEPEQIDITPE 92 >gi|290890363|ref|ZP_06553439.1| hypothetical protein AWRIB429_0829 [Oenococcus oeni AWRIB429] gi|290479981|gb|EFD88629.1| hypothetical protein AWRIB429_0829 [Oenococcus oeni AWRIB429] Length = 67 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R +SQE L L I+ Q + K+E G + L +SE+L+ + Sbjct: 6 EQLKKYRNKKNLSQEDLAGKLFISRQAISKWESGETTPDLNNLIKLSELLDVSLDTLVLG 65 Query: 77 SP 78 S Sbjct: 66 SE 67 >gi|329940155|ref|ZP_08289437.1| UDP-N-acetylglucosamine transferase [Streptomyces griseoaurantiacus M045] gi|329300981|gb|EGG44877.1| UDP-N-acetylglucosamine transferase [Streptomyces griseoaurantiacus M045] Length = 509 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MSDDYLVRIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|323498569|ref|ZP_08103562.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323316458|gb|EGA69476.1| transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 103 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 39/66 (59%), Gaps = 4/66 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R+R R G++QE+LG LG+ ++ +YE G + + ++ I++VL++P+++ Sbjct: 7 RRLRHIRKKQGITQEELGYKLGMEPAGASARISQYETGKHAPDYATVKRIADVLQAPVAY 66 Query: 73 FFDVSP 78 F+ Sbjct: 67 FYCEDD 72 >gi|300788896|ref|YP_003769187.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299798410|gb|ADJ48785.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 77 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R +S+ +L E LG+ +Q + E+G I+E E + F Sbjct: 7 NRIAMLRAERSISRRQLAEALGVHYQTIGYLERGEYSPSLFLALRIAEFFEVSVEVLFST 66 Query: 77 SP 78 P Sbjct: 67 KP 68 >gi|294619907|ref|ZP_06699283.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1679] gi|312952950|ref|ZP_07771806.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|291593844|gb|EFF25342.1| transcriptional regulator, Cro/CI family [Enterococcus faecium E1679] gi|310629091|gb|EFQ12374.1| helix-turn-helix protein [Enterococcus faecalis TX0102] Length = 71 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R G SQ +L + + +T Q V ++ G +++ +SE+L P++ F Sbjct: 5 SNLSRYRKEKGFSQIELAKKMNVTQQCVSSWQTGRTIPKPYQMKMLSEILSVPMNELFSD 64 >gi|288870687|ref|ZP_06114960.2| putative, transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288866263|gb|EFC98561.1| putative, transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 122 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 15/117 (12%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I+ R G+++++L + I+ + + E L+ + FF Sbjct: 17 GQAIKSTREKKGLTRKELAAQIRISPRYIASIENSGQTPSLQVFYRFVTCLDMSVDQFFF 76 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + T QL+ I + +R I + + I +E+K Sbjct: 77 PEKVIAK--------------TTQRRQLDTLLDNISENGLR-IITAVAKEIADTEQK 118 >gi|288557180|ref|YP_003429247.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4] gi|288548474|gb|ADC52355.1| site-specific tyrosine recombinase XerS [Bacillus pseudofirmus OF4] Length = 319 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 49/133 (36%), Gaps = 8/133 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+ ++ R I GM+Q +L + + ++ + E G + IS L PI Sbjct: 2 RKIGEEVKRLREIRGMTQGRLAKGI-CNQSEIARIELGRVTPSFHLMGLISSRLNVPIEH 60 Query: 73 F----FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR---S 125 F F +++ N +D + + + + I D K I + Sbjct: 61 FLTFMFVEREAYFNEVRLVINGFLDDKNYNGLYEFVKKELNIADNKRDSNICYFLEWNLL 120 Query: 126 IVSSEKKYRTIEE 138 + E +IEE Sbjct: 121 VAKQETNQISIEE 133 >gi|281491183|ref|YP_003353163.1| XRE family transcriptional regulator [Lactococcus lactis subsp. lactis KF147] gi|281374924|gb|ADA64442.1| Transcriptional regulator, XRE family [Lactococcus lactis subsp. lactis KF147] Length = 201 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 1/87 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R G +QE L E IT + +Q+ E G V L IS L P+S F+ Sbjct: 5 RVAELRKKRGWTQEVLAEKANITVRTIQRIENGT-DVSLDTLASISNALLVPVSELFESI 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + + I + Sbjct: 64 EEEAKEVEIMDMSKEQLIQLKYRRTII 90 >gi|251795604|ref|YP_003010335.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543230|gb|ACT00249.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 215 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 38/80 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I+ R + S + L E +G+T + +Q+YE+G +R+ RL+ ++ L+ + + Sbjct: 15 GANIKKYRDLRNYSLQVLAEKVGLTKKTIQRYEQGEHRIDTERLKALAAALDVTVLQLTE 74 Query: 76 VSPTVCSDISSEENNVMDFI 95 + E NV + Sbjct: 75 GAYEKLGIEVDESENVTLPV 94 >gi|251788551|ref|YP_003003272.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247537172|gb|ACT05793.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 96 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 1/85 (1%) Query: 1 MVGNKKIPNPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M NP + ++ R G+SQEK E V + E+ V + L Sbjct: 12 MKNTHATLNPNARTRISLNLKRLRAEKGLSQEKAAELADFHRTYVSQLERCVTNISIDGL 71 Query: 60 QHISEVLESPISFFFDVSPTVCSDI 84 + ++E L I+ + + +D Sbjct: 72 ERLAEALGVDITELLQIPDSSQADS 96 >gi|241896515|ref|ZP_04783811.1| conserved hypothetical protein [Weissella paramesenteroides ATCC 33313] gi|241870237|gb|EER73988.1| conserved hypothetical protein [Weissella paramesenteroides ATCC 33313] Length = 156 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 42/110 (38%), Gaps = 8/110 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I+ M+ L E +G++ + + G +++ ++E S + Sbjct: 39 GRNIKRYIKQNEMTAAHLAEVIGVSTATISDWSNGKTYPRIDKIEAMAEFFGISKSDLVE 98 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + ++E ++ GL + + D + R ++I+ +S Sbjct: 99 EPNQSSKAVVTDEPV---LMAAHWGLDI----SGLPDEE-RSRVIDRAKS 140 >gi|300776874|ref|ZP_07086732.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300502384|gb|EFK33524.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 141 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 2/131 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I+ G+ ++ R +LG+ QE L + Q+ + + L+ ISEVL+ P+ Sbjct: 8 IHQGRNVKRFREMLGIKQEALAFDLGDDWNQKKVSLLEQKEIIEDPLLKKISEVLKIPVE 67 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV-KVRQKIIELVRSIVSSE 130 F + + +I S + S + N F ID + ++ + + L ++ + Sbjct: 68 AFQNFNDEQAINIISNTFHDFKDNSVASAMNYNCTFNPIDKIVELYDEKVALYERMLKEK 127 Query: 131 KKYRTIEEECM 141 + E + Sbjct: 128 DEMMERLERLI 138 >gi|221210520|ref|ZP_03583500.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia multivorans CGD1] gi|221169476|gb|EEE01943.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia multivorans CGD1] Length = 203 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P I + + + ++ DG R + ID Sbjct: 86 S-QPKAPEAIRVDGPHDIPTLAGHDGQYQLRVWGPID 121 >gi|239815430|ref|YP_002944340.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239802007|gb|ACS19074.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 196 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-D 75 ++ R ++Q++L + + IT + + ++E G S L+ ++ + I D Sbjct: 10 SNLKRLRTERFLTQKQLADAIRITTRTLIRWENAEGEPGISELRMLASFFDIGIDQLISD 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 + P S + ++ + + Sbjct: 70 LLPPNDSGALARVADLACPLLDYWIAR 96 >gi|196249528|ref|ZP_03148225.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|196210822|gb|EDY05584.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 71 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 30/66 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R G+ Q+ + + GI+ QQ+ YE G + I+ VL+ + + Sbjct: 6 RIREIRENKGLKQKFVAQKTGISQQQLSDYETGKAYPRIDKAYKIAAVLDCKVDDLYIKK 65 Query: 78 PTVCSD 83 T ++ Sbjct: 66 ETTPNE 71 >gi|187934446|ref|YP_001886145.1| MerR family transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187722599|gb|ACD23820.1| transcriptional regulator, MerR family [Clostridium botulinum B str. Eklund 17B] Length = 118 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG++++L R ++ ++L + GI+ + E L+ +++ L+ +S Sbjct: 1 MSVGEKLKLFRNKKDLTLKELNKLTGISISFISDIENNRRNPSIDNLKILAKALDVQVSQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 D + + ++ +D + + + + + RQK+++++ Sbjct: 61 LLDEGTSRLPQKNISIDDKLDELEEDMKILFLKA--KKLSKEDRQKVLKMM 109 >gi|154506035|ref|ZP_02042773.1| hypothetical protein RUMGNA_03577 [Ruminococcus gnavus ATCC 29149] gi|153793534|gb|EDN75954.1| hypothetical protein RUMGNA_03577 [Ruminococcus gnavus ATCC 29149] Length = 122 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 12/112 (10%), Positives = 38/112 (33%), Gaps = 9/112 (8%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I + + + R +Q+++ + L I+ Q YE L ++++ + Sbjct: 3 NIQLVENLYRLRKAHHYTQQEISDLLNISRQAYSNYETSKRTPDLDSLMRLADIYGVSLD 62 Query: 72 FFFD---------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + + E + T + ++L + + ++ Sbjct: 63 QLVNHPCTKDGLILEQKGPFTYAMEIDTADTLYLTREEVELIKGYRAMNPED 114 >gi|153810652|ref|ZP_01963320.1| hypothetical protein RUMOBE_01036 [Ruminococcus obeum ATCC 29174] gi|149833048|gb|EDM88130.1| hypothetical protein RUMOBE_01036 [Ruminococcus obeum ATCC 29174] Length = 137 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 44/113 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I+ R +GM+Q++LG+ +G + Q+ YE + L I+EV ++ Sbjct: 9 VGQEIKKVRYRMGMTQKELGKLIGKSESQIGAYENASASITLDVLFKIAEVTKTKPEELI 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + + + + D + ++++ +++ Sbjct: 69 TGPAKKEVKTGWDAELRIYGLEDRKTVMTILAVNGYDVGQHKKQVTPTGKAVA 121 >gi|89897034|ref|YP_520521.1| hypothetical protein DSY4288 [Desulfitobacterium hafniense Y51] gi|89336482|dbj|BAE86077.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 215 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 47/130 (36%), Gaps = 13/130 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R +S + + E +T + + E+ + L+ I+ L PIS FF Sbjct: 40 LGSAIRFMRKNQKLSLKDVAEKTELTISHLSQIERNLASPSLITLEKIASALGYPISSFF 99 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + I +E + L I++V R ++ + + Sbjct: 100 VNPQFTSTHIPAEAQRTIQINPGMTLRFL------INNVGQRNQLGAYIAEVAD------ 147 Query: 135 TIEEECMVEQ 144 + EE ++ Sbjct: 148 -LSEEIIIHH 156 >gi|21910237|ref|NP_664505.1| putative immunity repressor protein - phage associated [Streptococcus pyogenes MGAS315] gi|28876166|ref|NP_795393.1| putaive immunity repressor protein [Streptococcus pyogenes phage 315.1] gi|28896063|ref|NP_802413.1| repressor protein [Streptococcus pyogenes SSI-1] gi|21904431|gb|AAM79308.1| putaive immunity repressor protein - phage-associated [Streptococcus pyogenes phage 315.1] gi|28811313|dbj|BAC64246.1| putative repressor protein [Streptococcus pyogenes SSI-1] Length = 112 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 26/80 (32%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R LG++Q I + +E + +++ I+ ++ Sbjct: 4 RIKYLRQALGLTQSAFAAKAHIHKNMIANHESQNSNPSLKQIEKIALAFNVEPAWLAGWD 63 Query: 78 PTVCSDISSEENNVMDFIST 97 I + V D + Sbjct: 64 TKPQIVIKEKVVRVQDPSAR 83 >gi|319744194|gb|EFV96561.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 59 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 29/56 (51%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +++ R GM+QE+L + + + + V ++EKG + + + I+ E + F Sbjct: 2 KLKELRQAKGMTQEELAKVIDVNVRSVNRWEKGQSDIYLQKAIKIARFFEVSLDEF 57 >gi|296840682|ref|ZP_06863200.2| transcriptional regulator, Cro/CI family [Neisseria polysaccharea ATCC 43768] gi|296840230|gb|EFH24168.1| transcriptional regulator, Cro/CI family [Neisseria polysaccharea ATCC 43768] Length = 68 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R +SQEK I + E+G + ++ I L + FF Sbjct: 6 IGARIRELRKAQNLSQEKFALKAEIDRTYLAGIEQGKRNLSMKNMEKIINALGTTFHQFF 65 Query: 75 DV 76 + Sbjct: 66 ED 67 >gi|239814989|ref|YP_002943899.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801566|gb|ACS18633.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 187 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R RM MS L + G++ + + E+G+ L+ +++ L P+S FF Sbjct: 6 IGAQVRALRMAAEMSAGSLAKASGVSASMLSRIERGLVSPSVETLERVAQGLHVPVSRFF 65 Query: 75 DVSPTVCS 82 Sbjct: 66 GDQARRTD 73 >gi|229192131|ref|ZP_04319099.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|228591338|gb|EEK49189.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 114 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 30/80 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R ++Q + GE + ++ QV E N+ L I+ L + Sbjct: 5 GENLKKFRSSRSLTQSEFGEKVQLSRSQVGNLEINYNQPDLDTLDRIATYLGVSVDALMG 64 Query: 76 VSPTVCSDISSEENNVMDFI 95 + T + + + + Sbjct: 65 RTSTPYEKNIANALDEIQTV 84 >gi|225017295|ref|ZP_03706487.1| hypothetical protein CLOSTMETH_01221 [Clostridium methylpentosum DSM 5476] gi|224949912|gb|EEG31121.1| hypothetical protein CLOSTMETH_01221 [Clostridium methylpentosum DSM 5476] Length = 81 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGI-----TFQQVQKYEKGVNRVGASRLQHISEVL 66 DI +GK IR R ++Q + L + T K E G+ + AS L I+E+L Sbjct: 8 DIPLGKNIRSIRKQKKLTQMDVVRELELAGLGTTRSSYAKIEAGIQHIYASELIAIAEIL 67 Query: 67 ESPISFFFDVSPTV 80 + P++ F +PT Sbjct: 68 DVPLTELFRSNPTD 81 >gi|182626310|ref|ZP_02954066.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177908408|gb|EDT70950.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] Length = 65 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R + MSQ +L + +G+ Q + E I++ L + ++ F V Sbjct: 2 NKIKEYRSLANMSQLELSKKVGVVRQTINLIENQKYNPSLDLCIRIAKALGTDLNTLFWV 61 Query: 77 SPTV 80 + Sbjct: 62 NEEE 65 >gi|38049246|gb|AAR10417.1| putative repressor protein [Enterococcus faecium] Length = 63 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R LG++QE+L + G+ Q + E +S++L+ + F Sbjct: 3 NKIKAIRKKLGITQEQLAKECGVVRQTINCIENDKYDPTLELAFKLSKMLKVKVDELF 60 >gi|29374780|ref|NP_813932.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|255974637|ref|ZP_05425223.1| predicted protein [Enterococcus faecalis T2] gi|29342238|gb|AAO80004.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|255967509|gb|EET98131.1| predicted protein [Enterococcus faecalis T2] gi|315578071|gb|EFU90262.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0630] Length = 124 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 52/123 (42%), Gaps = 4/123 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I+ R ++Q+++ L I K E G+ + L I++ I + Sbjct: 5 EKIKQLRENREITQKEISNALDINVSVYNKIELGIRPLREEELTAIADFFNVSIDYLTGR 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK-IIELVRSIVSSEKKYRT 135 + + ++++ + IS +LN + DD++ +K +I+ ++ K+ + Sbjct: 65 TDNPTTPSNNQKEAGQNIIS---HFRLNTNDLSSDDIEELEKELIDFQEFLIKRAKERKK 121 Query: 136 IEE 138 E Sbjct: 122 KSE 124 >gi|75759013|ref|ZP_00739121.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493479|gb|EAO56587.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 70 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 8/59 (13%), Positives = 21/59 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 12 IKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGVKVEEIFTLE 70 >gi|329768028|ref|ZP_08259539.1| hypothetical protein HMPREF0428_01236 [Gemella haemolysans M341] gi|328838513|gb|EGF88121.1| hypothetical protein HMPREF0428_01236 [Gemella haemolysans M341] Length = 361 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 35/75 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG+RIR R+ G + EK G+ G + +Q +E G RL +IS++ ++ Sbjct: 8 IAVGQRIRQIRINGGYTYEKFGDFFGASRGNIQAWEYGKALPNKERLVNISKIAGITVNE 67 Query: 73 FFDVSPTVCSDISSE 87 S + + E Sbjct: 68 LLYGSIDEFLENNIE 82 >gi|312952949|ref|ZP_07771805.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310629090|gb|EFQ12373.1| helix-turn-helix protein [Enterococcus faecalis TX0102] Length = 109 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 19/117 (16%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ +R LG +Q++L E + T Q V ++E V L +S L +P+S F D Sbjct: 10 IKEKRKALGWTQKELAEKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLDEEM 69 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + + R++ I+ ++ + E + Sbjct: 70 IETEE------------------DFVTLYRSL-SPHDRERTIDYMKLLKKQEFERNE 107 >gi|332654336|ref|ZP_08420080.1| conserved domain protein [Ruminococcaceae bacterium D16] gi|332517422|gb|EGJ47027.1| conserved domain protein [Ruminococcaceae bacterium D16] Length = 87 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G++QE+LGE +G + Q + E IS+V E I F Sbjct: 3 NRIKELREQRGLTQEQLGELVGASRQAINAIETEKFEPSIWLAYDISKVFECAIEEVFLF 62 Query: 77 SPTVCSDISSEENN 90 ++ + Sbjct: 63 DVSLRKSRADSSRQ 76 >gi|291525427|emb|CBK91014.1| Helix-turn-helix [Eubacterium rectale DSM 17629] Length = 112 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++GK IR R+ ++QE+L E + + + E+G +++ S L I L+ + Sbjct: 8 KHIGKIIRFYRLKNNLTQEQLSEYADCSCGFIGQIERGESKISLSVLSKIINTLKIDANE 67 Query: 73 FFDVSPTVCSDISSEENN 90 F + T S+ +N Sbjct: 68 LFWGTDTHTSESQQLDNQ 85 >gi|225869607|ref|YP_002745554.1| phage repressor protein [Streptococcus equi subsp. equi 4047] gi|225699011|emb|CAW92101.1| phage repressor protein [Streptococcus equi subsp. equi 4047] Length = 248 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 62/128 (48%), Gaps = 14/128 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPIS 71 +++G +++ RR+ + +S E+L + LG++ + +YEKG +V L+ IS++L + + Sbjct: 1 MDIGAKLKQRRLEVNVSVEELAKKLGVSKTTIYRYEKGEILKVPTEVLEKISKILNTNPA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 +F S T + T ++ Q++ + ++K++ + + Sbjct: 61 YFMGWSDTPT------------PVQTQTLQEIIVTSKQLEQPR-QEKVLSFANEQLEEQN 107 Query: 132 KYRTIEEE 139 K +I ++ Sbjct: 108 KVVSIFDK 115 >gi|224584483|ref|YP_002638281.1| DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469010|gb|ACN46840.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 134 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 47/129 (36%), Gaps = 3/129 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ G++Q +LG +G T Q V + + L+ + + P+ +FF Sbjct: 4 GERLQRVLNETGITQSELGRRVGATSQSVNGWCQSGILPRKDILELLPKATGKPLYWFFM 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV-RSIVSSEKKYR 134 ++ +L F Q+ V+ + + IEL + + Sbjct: 64 EDDEESDVPERLTQGGPTDLNDRQ-KRLLEIFDQLPTVE-QDRFIELAGARLQELDDFMA 121 Query: 135 TIEEECMVE 143 + +E Sbjct: 122 EYQRRRKIE 130 >gi|187933387|ref|YP_001884799.1| DNA-binding protein [Clostridium botulinum B str. Eklund 17B] gi|187721540|gb|ACD22761.1| putative DNA-binding protein [Clostridium botulinum B str. Eklund 17B] Length = 124 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 26/68 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R + + + + + + +EKG L I++ + I + Sbjct: 6 ERLKELRESKDLLSKDFAKIMNVEPATITNWEKGNRFPKDDVLIKIADYFDCSIDYILGR 65 Query: 77 SPTVCSDI 84 + C+ I Sbjct: 66 TDNPCAKI 73 >gi|148378605|ref|YP_001253146.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153931517|ref|YP_001382992.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937449|ref|YP_001386538.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|148288089|emb|CAL82157.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152927561|gb|ABS33061.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933363|gb|ABS38862.1| DNA-binding protein [Clostridium botulinum A str. Hall] Length = 130 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 1/94 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FD 75 ++ R G+SQ++LG L ++ Q + K+E G +L + + E + D Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDELVMD 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 V + N + I + + + + Sbjct: 65 VKAKESTKTEPLVMNRFETIIDSIDRENVKMYTK 98 >gi|120599870|ref|YP_964444.1| XRE family transcriptional regulator [Shewanella sp. W3-18-1] gi|146292194|ref|YP_001182618.1| XRE family transcriptional regulator [Shewanella putrefaciens CN-32] gi|120559963|gb|ABM25890.1| transcriptional regulator, XRE family with cupin sensor [Shewanella sp. W3-18-1] gi|145563884|gb|ABP74819.1| transcriptional regulator, XRE family with cupin sensor [Shewanella putrefaciens CN-32] Length = 182 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDIGASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVD 60 Query: 73 FFDVSPTVC 81 FF + T Sbjct: 61 FFSIEATSE 69 >gi|219668134|ref|YP_002458569.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538394|gb|ACL20133.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 361 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK I +R +QE+L + +G++ V K+E G + L I+ L + + F Sbjct: 6 GKVITAKRKEKSWTQEQLAQAVGVSTPAVSKWETGATYPDITLLPPIARALNTTVDELFS 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 + + S + +G Sbjct: 66 YQNELSDNEVSGFTQKATSLYEAEGFD 92 >gi|313633319|gb|EFS00169.1| DNA-binding domain-containing protein [Listeria seeligeri FSL N1-067] Length = 334 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 39/119 (32%), Gaps = 6/119 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISE 64 + +G +++ R G+S + L + I + + E+G V + +E Sbjct: 23 ILTELGDKLKQARREKGLSLDDLQQITKIQKRYLVAIEEGNYAVMPGKFYARAFIKQYAE 82 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + FD + + +E + + V R + +++ Sbjct: 83 AVGLDSATLFDEFESEVPETPQQEVVNNEPSRVQSKRNPMPAQSVGNQVNSRNRFFDIL 141 >gi|315122910|ref|YP_004063399.1| hypothetical protein CKC_05830 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496312|gb|ADR52911.1| hypothetical protein CKC_05830 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 251 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 7/137 (5%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 KKI NP +G R++ R+ +G++Q++ G +G++ V E G I Sbjct: 86 EKKIFNP--HAIGARLKAIRLKMGLTQKEFGLLIGLSSVGVGNIENGHRTPEIKTALKIK 143 Query: 64 EVLESPISFFFDVSP--TVCSDISSEENNVMDFISTPDGLQLN-RYFIQIDDVKVRQKII 120 L + + + + + +L I ++ R + Sbjct: 144 RALNKTLDWIYFGDECIGTRNRVRPSVTTKPTIPLKQLKKELKEEAISYIKNMDERD--L 201 Query: 121 ELVRSIVSSEKKYRTIE 137 ++ + + E+K+ Sbjct: 202 AMLTTRLRMEQKHNATL 218 Score = 36.7 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 43/112 (38%), Gaps = 2/112 (1%) Query: 4 NKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +K++ N ++ +G+R R R G Q +L G V ++E G+ + + Sbjct: 2 DKELKNNLNWKEIGQRFRALRKQHGFDQTELVSMSG-RRGNVARFEAGLAPASTNYALFL 60 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + +D + S+ E + + + L+ R + + + Sbjct: 61 RNTFGASFDWLYDGVENLRSERDRTEKKIFNPHAIGARLKAIRLKMGLTQKE 112 >gi|288929417|ref|ZP_06423262.1| DNA-binding protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329519|gb|EFC68105.1| DNA-binding protein [Prevotella sp. oral taxon 317 str. F0108] Length = 184 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 28/69 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R +L + E++ + GI+ + K E G RL IS+ + Sbjct: 8 IGQRLKGLREVLNIPAEEIADLCGISLEHYLKMEDGTADPSVYRLAKISKRYGIDLDVLL 67 Query: 75 DVSPTVCSD 83 S Sbjct: 68 FGEEPRMSA 76 >gi|238912425|ref|ZP_04656262.1| hypothetical protein SentesTe_15010 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 97 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 4/85 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLES 68 + + R++ R+ +QEKLG GI ++ +YE G++R + + VL Sbjct: 11 VMLPARLKSARLRANFTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMMCAFARVLNV 70 Query: 69 PISFFFDVSPTVCSDISSEENNVMD 93 P +F+ V + + Sbjct: 71 PECYFYTVDDDFAEAVLDLHRQWGN 95 >gi|238917665|ref|YP_002931182.1| hypothetical protein EUBELI_01745 [Eubacterium eligens ATCC 27750] gi|238873025|gb|ACR72735.1| Hypothetical protein EUBELI_01745 [Eubacterium eligens ATCC 27750] Length = 185 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 28/66 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI + + + + R G +QE + E +GI+ Q K+E+G + ++E + Sbjct: 38 DIMLQENLIMLRSFAGKTQEDIAEVIGISRQAYAKWERGETIPDIEKCGRLAEFYGVTMD 97 Query: 72 FFFDVS 77 Sbjct: 98 SLIKDD 103 >gi|258653000|ref|YP_003202156.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556225|gb|ACV79167.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 73 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 9/81 (11%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 MV ++ N IR R G M+Q L + +G+T Q V E+G Sbjct: 1 MVKPTRVTNS--------IRALRFAAGEMTQADLADRIGVTRQTVIAIEQGRYSPSLEMA 52 Query: 60 QHISEVLESPISFFFDVSPTV 80 I+ V + F P Sbjct: 53 FRIAHVFGVGLDAVFQYQPDS 73 >gi|256425817|ref|YP_003126470.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256040725|gb|ACU64269.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 250 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 30/88 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G +Q++ + LGI + YE+ L+ +S++ I Sbjct: 6 RNLKFLRKQKGWTQQEFADKLGIKRSLLGAYEEERAEPRTEVLELVSDMFRISIDDLLRR 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN 104 + E+ S ++ Sbjct: 66 DVGSQKESFLEKRRQQKMGSDRQVIEFV 93 >gi|257413954|ref|ZP_04744773.2| transcriptional regulator [Roseburia intestinalis L1-82] gi|257201706|gb|EEU99990.1| transcriptional regulator [Roseburia intestinalis L1-82] Length = 170 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 26/69 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + I+L R GMSQE+L E + Q V K+E G + ++E + Sbjct: 27 MLSDNIQLLRKRAGMSQEQLAELTETSRQTVSKWESGESIPDVIACDRMAEAFGVALEDM 86 Query: 74 FDVSPTVCS 82 S Sbjct: 87 LHYEEKNKS 95 >gi|225017049|ref|ZP_03706241.1| hypothetical protein CLOSTMETH_00974 [Clostridium methylpentosum DSM 5476] gi|224950216|gb|EEG31425.1| hypothetical protein CLOSTMETH_00974 [Clostridium methylpentosum DSM 5476] Length = 115 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 9/83 (10%), Positives = 24/83 (28%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++ + R + Q + LG+ YE + + Sbjct: 17 LGEKLEVLRKGKRLQQNEAANLLGVKPSTFSGYENDTTTPSLEVFSDLCAFYNVSADYLL 76 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 + ++ + IS+ Sbjct: 77 GYDKKQMLSVEGLTDDEIGLISS 99 >gi|182435303|ref|YP_001823022.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775942|ref|ZP_08235207.1| transcriptional regulator, XRE family [Streptomyces cf. griseus XylebKG-1] gi|178463819|dbj|BAG18339.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656275|gb|EGE41121.1| transcriptional regulator, XRE family [Streptomyces cf. griseus XylebKG-1] Length = 509 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E L + V + E+G + + I E L Sbjct: 1 MSDDYLVRIGKLIRDARQHRGWTQTQLAEALATSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|306521451|ref|ZP_07407798.1| putative phage DNA-binding protein [Clostridium difficile QCD-32g58] Length = 166 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 2/130 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES--PI 70 + +GK ++ R ++Q +L E GI+ + YE L +++ L+ I Sbjct: 1 MQIGKNLKKIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIEKTI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 +F + + ++ + + + + + L+ S + Sbjct: 61 FYFDIENEVMTNEDVLYFLQSLFPEEYYSFDEFLNAISNLMEDDDIRITSSLLLGAWSDK 120 Query: 131 KKYRTIEEEC 140 +Y + E+ Sbjct: 121 DQYYKLGEKL 130 >gi|148985532|ref|ZP_01818721.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP3-BS71] gi|148990157|ref|ZP_01821397.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP6-BS73] gi|149007428|ref|ZP_01831071.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP18-BS74] gi|168492078|ref|ZP_02716221.1| transcriptional activator [Streptococcus pneumoniae CDC0288-04] gi|225857528|ref|YP_002739039.1| transcriptional activator [Streptococcus pneumoniae P1031] gi|307128154|ref|YP_003880185.1| transcriptional activator [Streptococcus pneumoniae 670-6B] gi|147761000|gb|EDK67969.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP18-BS74] gi|147922252|gb|EDK73373.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP3-BS71] gi|147924551|gb|EDK75639.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP6-BS73] gi|183573649|gb|EDT94177.1| transcriptional activator [Streptococcus pneumoniae CDC0288-04] gi|225724859|gb|ACO20711.1| transcriptional activator [Streptococcus pneumoniae P1031] gi|301800717|emb|CBW33365.1| putative transcriptional regulator [Streptococcus pneumoniae OXC141] gi|306485216|gb|ADM92085.1| transcriptional activator [Streptococcus pneumoniae 670-6B] gi|332071931|gb|EGI82419.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] gi|332072142|gb|EGI82628.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] gi|332199268|gb|EGJ13346.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] Length = 287 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + S++S+ + + + L + Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYDDLEYIYR 96 >gi|160899167|ref|YP_001564749.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364751|gb|ABX36364.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 63 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 23/58 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 IR R G SQ L + LG++ Q V E G I+ V E+ I F Sbjct: 5 IRELRAQRGWSQAALADLLGVSRQTVNAIETGRYDPSLPLAFAIARVFETRIEAIFQE 62 >gi|87308573|ref|ZP_01090713.1| restriction-modification system regulatory protein, putative [Blastopirellula marina DSM 3645] gi|87288665|gb|EAQ80559.1| restriction-modification system regulatory protein, putative [Blastopirellula marina DSM 3645] Length = 73 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + I G+R+R R G SQE + V E+G + ++ I+E L+ Sbjct: 6 DILIRFGERVRELRAERGYSQEAFAHICELDRTYVGGIERGERNLALRNIERIAESLDIS 65 Query: 70 ISFFFDV 76 IS Sbjct: 66 ISELMKG 72 >gi|326772673|ref|ZP_08231957.1| transcriptional regulator, XRE family [Actinomyces viscosus C505] gi|326637305|gb|EGE38207.1| transcriptional regulator, XRE family [Actinomyces viscosus C505] Length = 65 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G++Q +LG LG++ Q + EKG I+ E+ + F Sbjct: 8 VRSLREACGLTQAQLGVALGVSRQSINSIEKGKYDPSLPLAIAIARYFETTVEEIF 63 >gi|325918018|ref|ZP_08180182.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937] gi|325535782|gb|EGD07614.1| Helix-turn-helix protein [Xanthomonas vesicatoria ATCC 35937] Length = 128 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 52/113 (46%), Gaps = 8/113 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGASRLQHISEVLESPISF 72 R+ R + G+SQ LG+ +G+ ++ +YE V +G L +++VL+ P+++ Sbjct: 12 ARLAQARQLRGLSQRALGDRMGLGKEKGSSRINRYEHQVTAIGFDNLNTLAQVLDVPVAY 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 ++ I + + D +L + D + K++EL+++ Sbjct: 72 LLADDASMADAILA--LSQADEAQRKVLTKLIPAV--LQDPSMLSKLVELLQA 120 >gi|295115097|emb|CBL35944.1| Predicted transcriptional regulators [butyrate-producing bacterium SM4/1] Length = 107 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 2/88 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +P D +G R++ R ++QE+L E +GI + + E + L + + L Sbjct: 1 MKSP-DHELGYRLKAARENRHLTQERLAEMVGIAASYLSEIENKRTVPSFNVLSSLCQTL 59 Query: 67 ESPISFF-FDVSPTVCSDISSEENNVMD 93 + F I+ + D Sbjct: 60 NVSLDDLIFHTESDQIESITRLLSQCND 87 >gi|316932209|ref|YP_004107191.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599923|gb|ADU42458.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 231 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 38/76 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++++ R + ++QE L + G+T + ++K E G +R L+ I+ ++ + +F Sbjct: 10 YIAEQVKFIRKMHKLTQENLADAAGLTTRTIEKIESGRHRPDEQTLRSIARAMQIDVRYF 69 Query: 74 FDVSPTVCSDISSEEN 89 +P + +E Sbjct: 70 EKPTPEQEARQKAEME 85 >gi|282866826|ref|ZP_06275862.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282558318|gb|EFB63884.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 509 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L E L + V + E+G + + I E L Sbjct: 1 MEDDYLVRIGKLIRDARQHRGWTQTQLAEALATSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|271962500|ref|YP_003336696.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505675|gb|ACZ83953.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 175 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 13/130 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR +R +S +L G++ + + E+G+ + A L I++ L + Sbjct: 9 IGEYIREQRTHAKISLRQLAAAAGVSNPYLSQIERGLRKPSAEILNQIAKGLHISSQALY 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + D L R I + RQ +I++ S E + Sbjct: 69 -----------VQAGLIEEREPDSDVLTAIRADHLI-SERQRQVLIDIYESFRK-ENRAG 115 Query: 135 TIEEECMVEQ 144 +E+ Q Sbjct: 116 APDEDAQTSQ 125 >gi|225856822|ref|YP_002738333.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] gi|225725104|gb|ACO20956.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] Length = 158 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 32/95 (33%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHDLTQHDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|219855694|ref|YP_002472816.1| hypothetical protein CKR_2351 [Clostridium kluyveri NBRC 12016] gi|219569418|dbj|BAH07402.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 66 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R LG++QE+L + G+ Q + E +S+ L+ + F Sbjct: 6 NKIKTIRNKLGITQEQLAKKCGVVRQTINCIENDKYDPTLELAFKLSKTLKVKVDELF 63 >gi|158522721|ref|YP_001530591.1| XRE family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158511547|gb|ABW68514.1| transcriptional regulator, XRE family [Desulfococcus oleovorans Hxd3] Length = 112 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 12/77 (15%), Positives = 30/77 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R++ R+ + QE + + G ++ + E+G L + E+ + ++ Sbjct: 8 KRLGIRLKELRLAKNLKQEDIEKKHGFNYRYYGRLERGEINPSLETLNKLCEIFDVSLAA 67 Query: 73 FFDVSPTVCSDISSEEN 89 F + E+ Sbjct: 68 LFQFLNPDDKLSTERES 84 >gi|254284584|ref|ZP_04959551.1| hypothetical protein A33_A0144 [Vibrio cholerae AM-19226] gi|150425369|gb|EDN17145.1| hypothetical protein A33_A0144 [Vibrio cholerae AM-19226] Length = 505 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G ++R R ++ E L + E+G L+ I+EV Sbjct: 13 FLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVEMLEVIAEVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + +F D P Sbjct: 73 QKDPIWFLDDEPEQIDITPE 92 >gi|78355603|ref|YP_387052.1| MerR family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218008|gb|ABB37357.1| transcriptional regulator, MerR family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 189 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 30/86 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI R GM++E+L E G+ + E+ LQ I+ L + Sbjct: 4 KKLGARICKFREERGMTREELAEAAGLGADFITALEEEDLYPSIGPLQKIARALNVRLGT 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 F D T + + D Sbjct: 64 FMDDEVTRDPIVVRKSGRESDLTMQK 89 >gi|15902995|ref|NP_358545.1| transcriptional regulator [Streptococcus pneumoniae R6] gi|15458561|gb|AAK99755.1| Hypothetical protein spr0951 [Streptococcus pneumoniae R6] Length = 177 Score = 44.4 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 20 MIGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 79 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 80 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 114 >gi|329948033|ref|ZP_08294934.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523172|gb|EGF50273.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 62 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 25/56 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G++Q +LG LG++ Q + EKG I+ E+ + F Sbjct: 5 VRSLREARGLTQAQLGAALGVSRQSINSIEKGKYDPSLPLAIAIARYFETAVEEIF 60 >gi|327404285|ref|YP_004345123.1| helix-turn-helix domain-containing protein [Fluviicola taffensis DSM 16823] gi|327319793|gb|AEA44285.1| helix-turn-helix domain protein [Fluviicola taffensis DSM 16823] Length = 121 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 33/65 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR R + G+SQ+ L LGI+ Q QK E GV ++ R I+ L + F Sbjct: 10 LGIKIRFFRDMKGLSQQALAMQLGISQQAYQKIESGVTKLDVERANVIANELGVQLDFLI 69 Query: 75 DVSPT 79 SP Sbjct: 70 SFSPA 74 >gi|320547716|ref|ZP_08042001.1| XRE family transcriptional regulator [Streptococcus equinus ATCC 9812] gi|320447791|gb|EFW88549.1| XRE family transcriptional regulator [Streptococcus equinus ATCC 9812] Length = 114 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 6/90 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R+ +SQ+ L E L I+ Q + KYE G + L I+++L + Sbjct: 10 QLKKLRVERKLSQDALAEQLFISRQSISKYETGESTPDLENLIKIADILGVSLDELVLGK 69 Query: 78 ------PTVCSDISSEENNVMDFISTPDGL 101 V S N+ +F+ L Sbjct: 70 KPCKIVERVIERKESSSMNIWEFLDKKWWL 99 >gi|283469388|emb|CAQ48599.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus ST398] Length = 391 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 32/68 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK + R + +S+++L E + ++ Q + +YE S++ ++ + S+ Sbjct: 1 MFIGKNLEYVRKLNALSRKELSEKINVSEQAIWQYETKNMMPEISKIYDMTSIFNVKSSY 60 Query: 73 FFDVSPTV 80 F P Sbjct: 61 FISEQPEE 68 >gi|302869357|ref|YP_003837994.1| Cupin 2 conserved barrel domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315504168|ref|YP_004083055.1| cupin 2 conserved barrel domain protein [Micromonospora sp. L5] gi|302572216|gb|ADL48418.1| Cupin 2 conserved barrel domain protein [Micromonospora aurantiaca ATCC 27029] gi|315410787|gb|ADU08904.1| Cupin 2 conserved barrel domain protein [Micromonospora sp. L5] Length = 207 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 2/115 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M V V +++R R G S E+L G++ + + E L Sbjct: 1 MTDTGGRVGAVTSAVARQVRDLRAARGWSFEELAGRSGVSKGMLVQIEGARTNPSIGTLC 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 +++ I+ + P S + + + L R + + + Sbjct: 61 RVADAFGVSIARLLE--PAEQSTVRVSAADEAPVLWRGPNGGLARLLSGLGEPDL 113 >gi|257790750|ref|YP_003181356.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317488538|ref|ZP_07947086.1| hypothetical protein HMPREF1023_00784 [Eggerthella sp. 1_3_56FAA] gi|257474647|gb|ACV54967.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316912372|gb|EFV33933.1| hypothetical protein HMPREF1023_00784 [Eggerthella sp. 1_3_56FAA] Length = 72 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 25/63 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I R +SQ +G++ + + E G L+ I+ L++ + Sbjct: 9 QLGTNIARLRASANVSQTSFALMVGVSRKYLIDIESGKANPTVDMLERIAGGLDTTVGQL 68 Query: 74 FDV 76 F+ Sbjct: 69 FEG 71 >gi|229132613|ref|ZP_04261461.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196] gi|228650845|gb|EEL06832.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196] Length = 405 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 5 LGEKIKTLRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 63 Query: 75 DVSPTVCSDISSEENN 90 + +I + Sbjct: 64 EEDDVEIVEIIQQMEQ 79 >gi|226305801|ref|YP_002765761.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226184918|dbj|BAH33022.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 194 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 3/106 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R M+ L E I+ + + E G R L I++ P+ Sbjct: 13 IGPRLRALRQQSDMTLADLSETTDISVSTLSRLESGTRRANLELLLPIAKAHGVPLDDLV 72 Query: 75 DV---SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + P V + + + +++ G I R+ Sbjct: 73 NSKIKDPRVREEPRTVGCMTVIPLTSQPGNLQAYKMIISPTDDDRE 118 >gi|146318559|ref|YP_001198271.1| Cro/CI family transcriptional regulator [Streptococcus suis 05ZYH33] gi|146320757|ref|YP_001200468.1| Cro/CI family transcriptional regulator [Streptococcus suis 98HAH33] gi|253751682|ref|YP_003024823.1| Cro/CI family transcriptional regulator [Streptococcus suis SC84] gi|253755603|ref|YP_003028743.1| Cro/CI family transcriptional regulator [Streptococcus suis BM407] gi|145689365|gb|ABP89871.1| transcriptional regulator, Cro/CI family [Streptococcus suis 05ZYH33] gi|145691563|gb|ABP92068.1| transcriptional regulator, Cro/CI family [Streptococcus suis 98HAH33] gi|251815971|emb|CAZ51587.1| transcriptional regulator, Cro/CI family [Streptococcus suis SC84] gi|251818067|emb|CAZ55859.1| transcriptional regulator, Cro/CI family [Streptococcus suis BM407] Length = 73 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R SQE L L + K E G ++ L ISE+ + + + Sbjct: 3 RRIRDLREDCDYSQEYLARYLSCSQSAYSKIESGKRQIPVDFLIKISELYQVSTDYLLGL 62 Query: 77 SPTV 80 + T Sbjct: 63 TDTP 66 >gi|152996614|ref|YP_001341449.1| XRE family transcriptional regulator [Marinomonas sp. MWYL1] gi|150837538|gb|ABR71514.1| transcriptional regulator, XRE family [Marinomonas sp. MWYL1] Length = 203 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKR++ R+ G + E++G+ GI + K E + +Q + LE + Sbjct: 22 LELGKRVKEIRLSKGWTLEEVGKRTGIARSTLSKIENDQVSPSFTIVQKLINGLEMDLPQ 81 Query: 73 FFDVSPTVCSDISSE 87 F + + Sbjct: 82 LFVEASEHSIAGRRD 96 >gi|317508654|ref|ZP_07966310.1| hypothetical protein HMPREF9336_02682 [Segniliparus rugosus ATCC BAA-974] gi|316253057|gb|EFV12471.1| hypothetical protein HMPREF9336_02682 [Segniliparus rugosus ATCC BAA-974] Length = 86 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 1/84 (1%) Query: 2 VGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + + + + +D +G + RR+ G S L GI + +YE L Sbjct: 1 MSSAEDEDGIDLRALGHELARRRVAKGWSLTDLVGHTGIAKATLHRYEMAQTNHTIRHLV 60 Query: 61 HISEVLESPISFFFDVSPTVCSDI 84 I+ L+ PIS V + Sbjct: 61 KIARALDVPISQIVSVLDEPPASS 84 >gi|251779168|ref|ZP_04822088.1| DNA-biding phage protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083483|gb|EES49373.1| DNA-biding phage protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 80 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R G+SQ +L + L I+ + E G L I+ LE + Sbjct: 8 LKNIRENKGISQRQLAKKLNISQGYISSIENGKKSPTIRMLYRIANALEICPHYLL 63 >gi|237733521|ref|ZP_04564002.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383354|gb|EEO33445.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 211 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL+ + Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNEL 69 Query: 74 FDVS 77 Sbjct: 70 LSGE 73 >gi|167771894|ref|ZP_02443947.1| hypothetical protein ANACOL_03267 [Anaerotruncus colihominis DSM 17241] gi|167665692|gb|EDS09822.1| hypothetical protein ANACOL_03267 [Anaerotruncus colihominis DSM 17241] Length = 188 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 34/95 (35%), Gaps = 1/95 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R +S ++L + ++ + + E N + L+ IS L +S Sbjct: 3 QLGMNIKAERKKQNISLQELASWVQVSTSFLSQIENEKNEPSLTTLKRISTCLGVTVSKL 62 Query: 74 F-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + I E + + + ++ F Sbjct: 63 LGEDESVRLMMIKKESRHRLTNLGDGLEIEFISAF 97 >gi|167761064|ref|ZP_02433191.1| hypothetical protein CLOSCI_03462 [Clostridium scindens ATCC 35704] gi|167661298|gb|EDS05428.1| hypothetical protein CLOSCI_03462 [Clostridium scindens ATCC 35704] Length = 71 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++++ R+ L MSQE L + +T Q + E G I +VL + F Sbjct: 4 KKMKMARLSLDMSQEMLAAKVDVTRQTIGMIEAGKFNPSLKLCIAICKVLHVTLDDLFWE 63 Query: 77 SPTVCSDI 84 + Sbjct: 64 EDEYEENS 71 >gi|160945426|ref|ZP_02092652.1| hypothetical protein FAEPRAM212_02948 [Faecalibacterium prausnitzii M21/2] gi|158443157|gb|EDP20162.1| hypothetical protein FAEPRAM212_02948 [Faecalibacterium prausnitzii M21/2] Length = 66 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R++ R+ G +Q L +G+T + V +E L +++ + + Sbjct: 4 ISERLQHLRLTHGYTQTDLARTMGVTRRAVYAWEHDKC-PEILHLIQLAQFYQVSTDYLL 62 Query: 75 DVSP 78 ++ Sbjct: 63 GLTE 66 >gi|15601711|ref|NP_233342.1| hypothetical protein VCA0958 [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586667|ref|ZP_01676451.1| hypothetical protein VC274080_A0999 [Vibrio cholerae 2740-80] gi|121726421|ref|ZP_01679695.1| hypothetical protein VCV52_A0910 [Vibrio cholerae V52] gi|147672118|ref|YP_001215122.1| hypothetical protein VC0395_0281 [Vibrio cholerae O395] gi|153801392|ref|ZP_01955978.1| hypothetical protein A51_C0942 [Vibrio cholerae MZO-3] gi|153818327|ref|ZP_01970994.1| hypothetical protein A5C_A1168 [Vibrio cholerae NCTC 8457] gi|153821038|ref|ZP_01973705.1| hypothetical protein A5E_A0970 [Vibrio cholerae B33] gi|153827802|ref|ZP_01980469.1| hypothetical protein A59_A0011 [Vibrio cholerae 623-39] gi|227812524|ref|YP_002812534.1| hypothetical protein VCM66_A0918 [Vibrio cholerae M66-2] gi|229505902|ref|ZP_04395411.1| hypothetical protein VCF_001112 [Vibrio cholerae BX 330286] gi|229510244|ref|ZP_04399724.1| hypothetical protein VCE_001648 [Vibrio cholerae B33] gi|229514370|ref|ZP_04403831.1| hypothetical protein VCB_002020 [Vibrio cholerae TMA 21] gi|229517626|ref|ZP_04407071.1| hypothetical protein VCC_001649 [Vibrio cholerae RC9] gi|229522483|ref|ZP_04411899.1| hypothetical protein VIF_003043 [Vibrio cholerae TM 11079-80] gi|229526492|ref|ZP_04415896.1| hypothetical protein VCA_000620 [Vibrio cholerae bv. albensis VL426] gi|229528143|ref|ZP_04417534.1| hypothetical protein VCG_001223 [Vibrio cholerae 12129(1)] gi|229605434|ref|YP_002876138.1| hypothetical protein VCD_000376 [Vibrio cholerae MJ-1236] gi|254850124|ref|ZP_05239474.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|297579993|ref|ZP_06941920.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|298499732|ref|ZP_07009538.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|9658396|gb|AAF96854.1| hypothetical protein VC_A0958 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549095|gb|EAX59130.1| hypothetical protein VC274080_A0999 [Vibrio cholerae 2740-80] gi|121631169|gb|EAX63544.1| hypothetical protein VCV52_A0910 [Vibrio cholerae V52] gi|124123058|gb|EAY41801.1| hypothetical protein A51_C0942 [Vibrio cholerae MZO-3] gi|126511140|gb|EAZ73734.1| hypothetical protein A5C_A1168 [Vibrio cholerae NCTC 8457] gi|126521412|gb|EAZ78635.1| hypothetical protein A5E_A0970 [Vibrio cholerae B33] gi|146314501|gb|ABQ19041.1| hypothetical protein VC0395_0281 [Vibrio cholerae O395] gi|148876647|gb|EDL74782.1| hypothetical protein A59_A0011 [Vibrio cholerae 623-39] gi|227011666|gb|ACP07877.1| conserved hypothetical protein [Vibrio cholerae M66-2] gi|227015605|gb|ACP11814.1| conserved hypothetical protein [Vibrio cholerae O395] gi|229334505|gb|EEN99990.1| hypothetical protein VCG_001223 [Vibrio cholerae 12129(1)] gi|229336650|gb|EEO01668.1| hypothetical protein VCA_000620 [Vibrio cholerae bv. albensis VL426] gi|229340468|gb|EEO05474.1| hypothetical protein VIF_003043 [Vibrio cholerae TM 11079-80] gi|229345662|gb|EEO10635.1| hypothetical protein VCC_001649 [Vibrio cholerae RC9] gi|229348350|gb|EEO13308.1| hypothetical protein VCB_002020 [Vibrio cholerae TMA 21] gi|229352689|gb|EEO17629.1| hypothetical protein VCE_001648 [Vibrio cholerae B33] gi|229356253|gb|EEO21171.1| hypothetical protein VCF_001112 [Vibrio cholerae BX 330286] gi|229371920|gb|ACQ62342.1| hypothetical protein VCD_000376 [Vibrio cholerae MJ-1236] gi|254845829|gb|EET24243.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|297535639|gb|EFH74473.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297541713|gb|EFH77764.1| conserved hypothetical protein [Vibrio cholerae MAK 757] Length = 505 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G ++R R ++ E L + E+G L+ I+EV Sbjct: 13 FLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVEMLEVIAEVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + +F D P Sbjct: 73 QKDPIWFLDDEPEQIDITPE 92 >gi|332666273|ref|YP_004449061.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332335087|gb|AEE52188.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 173 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 17/133 (12%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF--- 73 K IR R + +SQE+L +G+ + YE G L IS + I Sbjct: 12 KNIRFLRKRMNLSQEELACKIGLNRGNIASYENGSAEPKVCNLLRISRLFGVSICDLAQR 71 Query: 74 -FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI-----V 127 +++ D + P+ L++ Q ++++++ + + Sbjct: 72 DLSEGQAASRVNGHLVSDLQDQLKNPEQLEVIHSNAQ--------RMLQMIEGLMTCSRI 123 Query: 128 SSEKKYRTIEEEC 140 E+ I +E Sbjct: 124 KLEQADNQIPQEL 136 >gi|328885857|emb|CCA59096.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces venezuelae ATCC 10712] Length = 509 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +GK IR R G +Q +L + L + V + E+G + + I E L Sbjct: 1 MADDYLVRIGKLIRDARQHRGWTQTQLADALATSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|311032008|ref|ZP_07710098.1| transcriptional regulator, XRE family protein [Bacillus sp. m3-13] Length = 134 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 35/114 (30%), Gaps = 7/114 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ N + + I+ R SQ+ L + L + K+E L Sbjct: 1 MMNNTS-------FLARNIKSLRNQKNWSQQDLADRLNRVHGTISKWETEKEVPPIETLI 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +S++ + I + + + + + + Y Q + K Sbjct: 54 ELSKLFQVSIDYLVGNHYEQEHYVKEFNQLYQIKQADEELMHIVDYLKQHPNFK 107 >gi|331677084|ref|ZP_08377780.1| putative transcriptional regulator [Escherichia coli H591] gi|331075773|gb|EGI47071.1| putative transcriptional regulator [Escherichia coli H591] Length = 89 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R G+SQ + E G+T + E+ S LQ + +V +S FF Sbjct: 9 GKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDKVSPAISTLQKLLKVYGLSLSEFFS 68 Query: 76 VSPTVCSD 83 Sbjct: 69 EPEKPDEP 76 >gi|307273982|ref|ZP_07555192.1| helix-turn-helix protein [Enterococcus faecalis TX0855] gi|306509290|gb|EFM78350.1| helix-turn-helix protein [Enterococcus faecalis TX0855] Length = 111 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR +R LG +Q++L + + T Q V ++E V L +S L +P+S F D Sbjct: 10 IREKRKALGWTQKELAKKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLD--- 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIE 121 V D E + +ST D ++ Y + R ++++ Sbjct: 67 NVVVDYEEEFLALYRSLSTEDAIRTIDYMKLLKRQENERNQLLK 110 >gi|326791705|ref|YP_004309526.1| hypothetical protein Clole_2627 [Clostridium lentocellum DSM 5427] gi|326542469|gb|ADZ84328.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 176 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 29/61 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R L ++Q++L + LGI ++KYEKG ++ ++ L+ Sbjct: 1 MLGNNIKTARKKLKLTQKELAQQLGIAEITIRKYEKGEREPNLETIEKLAVTLKVTPYEL 60 Query: 74 F 74 Sbjct: 61 L 61 >gi|295677026|ref|YP_003605550.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia sp. CCGE1002] gi|295436869|gb|ADG16039.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia sp. CCGE1002] Length = 332 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 3/124 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ + Sbjct: 34 GEREERDPFLTAMGERVRLLRARRGMTRKTLAAETGLSERHLANLESGVGNASVLVLRQL 93 Query: 63 SEVLESPISFFFDVSPTVCSD---ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + L P++ T ++ I + L F Q R+ Sbjct: 94 AATLNCPLAEVIGDETTASAEWLLIRELLQGRDQAALQRARIALAEMFAQAPRDPHRKDR 153 Query: 120 IELV 123 I L+ Sbjct: 154 IALI 157 >gi|258509913|ref|YP_003172664.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|257149840|emb|CAR88813.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|259651175|dbj|BAI43337.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 393 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 38/101 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R + G ++++L + +G+T Q V +YE L ++ + F Sbjct: 1 MFIGSKLQALRELNGYTRKELSDVIGVTQQAVWQYENDNVMPKIEILNTFQKIFNVEMLF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 S + S+ +L ++ D Sbjct: 61 LISGSAPKHVVHEEKIAFRTSDHSSRKKTKLEARYLDFADD 101 >gi|229551141|ref|ZP_04439866.1| transcription regulator [Lactobacillus rhamnosus LMS2-1] gi|258541073|ref|YP_003175572.1| transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|229315433|gb|EEN81406.1| transcription regulator [Lactobacillus rhamnosus LMS2-1] gi|257152749|emb|CAR91721.1| Transcriptional regulator [Lactobacillus rhamnosus Lc 705] Length = 393 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 38/101 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R + G ++++L + +G+T Q V +YE L ++ + F Sbjct: 1 MFIGSKLQALRELNGYTRKELSDVIGVTQQAVWQYENDNVMPKIEILNTFQKIFNVEMLF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 S + S+ +L ++ D Sbjct: 61 LISGSAPKHVVHEEKIAFRTSDHSSRKKTKLEARYLDFADD 101 >gi|212633084|ref|YP_002309609.1| hypothetical protein swp_0179 [Shewanella piezotolerans WP3] gi|212554568|gb|ACJ27022.1| hypothetical protein swp_0179 [Shewanella piezotolerans WP3] Length = 240 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 33/97 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I+ R +SQ +L E +GI + K E + + + L + Sbjct: 1 MTLGKQIKHYRTARDLSQPELAEMMGIEQSYLSKLENDKSIPSNDVFRSLLTALSVNTTE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 F T + ++ I + + Sbjct: 61 FLGGIDTQKHRPQLNQIADIEAILSQRDNMKVASLRR 97 >gi|160895159|ref|ZP_02075932.1| hypothetical protein CLOL250_02719 [Clostridium sp. L2-50] gi|156863193|gb|EDO56624.1| hypothetical protein CLOL250_02719 [Clostridium sp. L2-50] Length = 273 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 33/91 (36%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R GMSQ++L E + +T Q V ++E G L+ +S+ + I+ Sbjct: 25 IFELRTKRGMSQDELAEKIMVTRQAVSRWENGETIPNTDTLKLLSKEFDVSINTLLGEPR 84 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + I LN + + Sbjct: 85 KLICQCCGMPLEDDTIIGHNSDGSLNEDYCK 115 >gi|90021251|ref|YP_527078.1| XRE family transcriptional regulator [Saccharophagus degradans 2-40] gi|89950851|gb|ABD80866.1| conserved hypothetical protein [Saccharophagus degradans 2-40] Length = 175 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++ R G+SQ +L +T + E+G + L+ I + + FF Sbjct: 2 GRKLMRLRQDRGLSQRELARRAEMTNSTLSMIEQGKVSPSVASLERILSAIPISLEAFFS 61 Query: 76 VSPTVCSDISSEENNVMD 93 S +E +D Sbjct: 62 NSTAQVGVYKEQELARVD 79 >gi|54310635|ref|YP_131655.1| putative transcriptional regulator [Photobacterium profundum SS9] gi|46915078|emb|CAG21853.1| Hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 121 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +IR R ++Q + + LG+ Q E G S L I+++ P+ +F Sbjct: 11 KIREARERKDITQVAMAKALGLARQTYLDLESGKTEPRISTLVSIADITGRPLIWFIYED 70 Query: 78 PTVCSDISSEE 88 + S + Sbjct: 71 EGLISSEDKND 81 >gi|327466843|gb|EGF12361.1| transcriptional regulator [Streptococcus sanguinis SK330] Length = 131 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 1/97 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R++ GM++++L L IT Q V ++EK AS Q ++ + +FF Sbjct: 4 GDILKQLRLLYGMTRKELATKLDITEQAVWQFEKNETSPKASVKQKMTNLFGVRSDYFFQ 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 ++ D+ + + +T + ++ D Sbjct: 64 MNSISNFDM-TSVAFRNEAENTRKATDIQEAYLNTLD 99 >gi|304383918|ref|ZP_07366375.1| transcriptional regulator [Prevotella marshii DSM 16973] gi|304334996|gb|EFM01269.1| transcriptional regulator [Prevotella marshii DSM 16973] Length = 184 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ R +L + E++ + GI+ + E G + RL IS+ ++ Sbjct: 7 QIGQRLKGLREVLNIPAEEVADLCGISLEHYHNIEAGRSDPSVYRLAKISKRYGIDLNVL 66 Query: 74 FDVSPTVCSD 83 S Sbjct: 67 LFGEEPKMSA 76 >gi|296134181|ref|YP_003641428.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296032759|gb|ADG83527.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 182 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V RI+ R++ G S+E++ L I+ +YE G + + S + I+ + ++ Sbjct: 8 VANRIKGLRLLAGFSEEQMAAWLNISKDSYIRYENGEDDIPISIIYEIANIHGVDLTDIL 67 Query: 75 DVSPTVCSDI 84 ++ Sbjct: 68 TGVSPKLHEV 77 >gi|255093201|ref|ZP_05322679.1| putative regulatory protein [Clostridium difficile CIP 107932] Length = 103 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 30/101 (29%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKR++ R ++ ++ +G++ + + E G +L Sbjct: 3 YIGKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVNILNISADVL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + N L L I I+ + Sbjct: 63 IKDITSTGKTYLENDINEELKDLNSRELNLISQIIDINKKE 103 >gi|254466890|ref|ZP_05080301.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] gi|206687798|gb|EDZ48280.1| transcriptional regulator, XRE family [Rhodobacterales bacterium Y4I] Length = 218 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 1/105 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R M +LGE G++ + + E+G + L I+ V + FF Sbjct: 31 IGPKLRSLRQGKDMGLAQLGEHTGLSAAMLSRIERGQVFPTLATLLRIAMVFGVGLDHFF 90 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + + L+ F +D + + Sbjct: 91 -GPGEDAPVLEIVRQRDRLKLGDKTSGPLSYLFESLDFPVTKSRF 134 >gi|199598262|ref|ZP_03211683.1| hypothetical protein LRH_10310 [Lactobacillus rhamnosus HN001] gi|199590865|gb|EDY98950.1| hypothetical protein LRH_10310 [Lactobacillus rhamnosus HN001] Length = 393 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 38/101 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R + G ++++L + +G+T Q V +YE L ++ + F Sbjct: 1 MFIGSKLQALRELNGYTRKELSDVIGVTQQAVWQYENDNVMPKIEILNTFQKIFNVEMLF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 S + S+ +L ++ D Sbjct: 61 LISGSAPKHVVHEEKIAFRTSDHSSRKKTKLEARYLDFADD 101 >gi|254439667|ref|ZP_05053161.1| Cupin domain protein [Octadecabacter antarcticus 307] gi|198255113|gb|EDY79427.1| Cupin domain protein [Octadecabacter antarcticus 307] Length = 189 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 35/94 (37%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P P +G IR R G++ LGE LG + + + E+ + S L++I+ L Sbjct: 4 APPPESCTLGADIRALRKARGLTLSGLGETLGRSVGWLSQVERDKSEPSISDLRYIASAL 63 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 + +S F + I + Sbjct: 64 DVSVSSLFRSEAPEHEQGLIVRGDARRPIGSRPA 97 >gi|297203046|ref|ZP_06920443.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sviceus ATCC 29083] gi|197712042|gb|EDY56076.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces sviceus ATCC 29083] Length = 509 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G+ IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MADDYLVRIGRLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|220908355|ref|YP_002483666.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219864966|gb|ACL45305.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] Length = 224 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 21/58 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R SQ L LGI+ Q V +E G I+ + I F Sbjct: 3 NRLKELRQRRSWSQADLARSLGISRQAVNGFESGKFDPSLEMAFKIARLFNVAIEDVF 60 >gi|158321856|ref|YP_001514363.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158142055|gb|ABW20367.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 125 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 4/106 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R ++ + G++ + + E A+ L ++ I + Sbjct: 4 IGKRIRAARKANNLTLIDIKNITGLSTGNLSELENDKFLPSANALIQFKKLFNVSIDWIL 63 Query: 75 DVSPTVCSDISSEENNVMD----FISTPDGLQLNRYFIQIDDVKVR 116 + N + + T D +++ + ++D + Sbjct: 64 TGEEPNYATNPQAFNEMKEAYIISEYTEDEIKMIESYRKLDYESKQ 109 >gi|330718206|ref|ZP_08312806.1| transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 71 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 28/70 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R +SQ +L + +G+ Q + E + ++ LE+ ++ F Sbjct: 2 NRIKQYRQKKKLSQYELSQRIGVARQTINLIENDKYNPSLALCLKLAYALETDLNTLFWE 61 Query: 77 SPTVCSDISS 86 ++ S Sbjct: 62 VDASSAESSQ 71 >gi|300718357|ref|YP_003743160.1| transcriptional regulator, XRE family protein [Erwinia billingiae Eb661] gi|299064193|emb|CAX61313.1| Transcriptional regulator, XRE family protein [Erwinia billingiae Eb661] Length = 72 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR++ R+ G+SQE G+ V E+G+ + +++ L + + Sbjct: 12 GKRVKQLRLQAGLSQEAFAHKCGLDRTYVSGIERGLRNPTLEVIAILAKGLGIELKNLIE 71 >gi|262403444|ref|ZP_06080002.1| predicted transcriptional regulator [Vibrio sp. RC586] gi|262349948|gb|EEY99083.1| predicted transcriptional regulator [Vibrio sp. RC586] Length = 207 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ EK + G+ + K E +Q ++ L+ + F Sbjct: 28 LGQRIKDIRTRLGITLEKASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|258625159|ref|ZP_05720075.1| Predicted transcriptional regulator [Vibrio mimicus VM603] gi|258582534|gb|EEW07367.1| Predicted transcriptional regulator [Vibrio mimicus VM603] Length = 505 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G ++R R ++ E L + E+G L+ I+EV Sbjct: 13 FLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVEMLEVIAEVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + +F D P Sbjct: 73 QKDPIWFLDDEPEQVDITPE 92 >gi|226312433|ref|YP_002772327.1| DNA-binding protein [Brevibacillus brevis NBRC 100599] gi|226095381|dbj|BAH43823.1| putative DNA-binding protein [Brevibacillus brevis NBRC 100599] Length = 185 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R +S +K E G++ + + E+G + + L I+ L S Sbjct: 8 IGENIKRIRKERNLSLDKTSEITGVSKTMLGQIERGKSAPTITTLWKIASGLRLSFSSL 66 >gi|222153050|ref|YP_002562227.1| phage repressor-like protein [Streptococcus uberis 0140J] gi|222113863|emb|CAR42005.1| putative phage repressor-like protein [Streptococcus uberis 0140J] Length = 230 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 1/114 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R MSQE LG+ LG+ + +EKG N L + E+ F Sbjct: 4 GKQLKTIRQKHQMSQESLGQKLGVNKMTISNWEKGKNVPNQKHLNQLLEIFHLDADSFNP 63 Query: 76 VSPTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + + N + + L+ +Q+ + + + + S+ + Sbjct: 64 YQAIILPYKQLTSLNQEKVVTYSKELLEEQNKIVQLSQSQKKLYVYRVYESLSA 117 >gi|254393692|ref|ZP_05008816.1| hypothetical protein SSCG_06155 [Streptomyces clavuligerus ATCC 27064] gi|294815970|ref|ZP_06774613.1| HTH_3 domain-containing protein [Streptomyces clavuligerus ATCC 27064] gi|197707303|gb|EDY53115.1| hypothetical protein SSCG_06155 [Streptomyces clavuligerus ATCC 27064] gi|294328569|gb|EFG10212.1| HTH_3 domain-containing protein [Streptomyces clavuligerus ATCC 27064] Length = 409 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 15/123 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG---------ITFQQVQKYEKGVNRVGASRLQHISEV 65 +G IR RR G +Q +L L ++ Q++ ++E G L ++ V Sbjct: 73 IGANIRHRRKQRGWTQARLAWELCRAAGVQGEPVSTQEITRWEAGRRTPR-DWLPFLAAV 131 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR---QKIIEL 122 L + P V + + P R +I + VR Q++ L Sbjct: 132 LGVSVEVL--TGPPVPPEAAMLSLAGYLPEGDPLAPLSARNGRRIGEGVVRDLHQRVHGL 189 Query: 123 VRS 125 R+ Sbjct: 190 RRA 192 >gi|319425493|gb|ADV53567.1| Cupin 2 conserved barrel domain protein [Shewanella putrefaciens 200] Length = 182 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++ R + G+SQ +L + G+T + EK S L+ + + + Sbjct: 1 MDIGASLKTVRKMKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGIPMSLVD 60 Query: 73 FFDVSPTVC 81 FF + T Sbjct: 61 FFSIEATSE 69 >gi|110679476|ref|YP_682483.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] gi|109455592|gb|ABG31797.1| transcriptional regulator, putative [Roseobacter denitrificans OCh 114] Length = 468 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 1/122 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG ++R R +Q ++ LG++ + E + L ++E Sbjct: 6 VGPQLRQLRRSFNHTQAEMARQLGVSAAYINLLENNQRSLSVKMLMELTESYGIDWRSLV 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + S F LQ R + K+ ++L R+ R Sbjct: 66 NDSEITHLADLRTAVRDPIFEGDTPDLQEMRAALDHA-PKLVDLFLQLYRNHAKLRDNMR 124 Query: 135 TI 136 ++ Sbjct: 125 SV 126 >gi|28870630|ref|NP_793249.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213971343|ref|ZP_03399458.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|301381233|ref|ZP_07229651.1| DNA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302061820|ref|ZP_07253361.1| DNA-binding protein [Pseudomonas syringae pv. tomato K40] gi|302131845|ref|ZP_07257835.1| DNA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28853878|gb|AAO56944.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213923881|gb|EEB57461.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|331019463|gb|EGH99519.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 189 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 1/109 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M PV +V +R R +SQ L E G++ + + E G V + L Sbjct: 1 MHKENSPRAPVLQHVSHNVRRLRNAADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLD 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++E LE S +E + L L R + Sbjct: 61 RVAEALEVAFSDLIQAPENRDHSRINELAWAGTIPGSKAVL-LARAIAR 108 >gi|330467327|ref|YP_004405070.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328810298|gb|AEB44470.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] Length = 363 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 42/89 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+++R R+ LG+SQ+ L +G+ + K E G R+ A L +S L+ + + Sbjct: 10 VGEQVRQARLSLGISQQDLATMVGLDRTMLAKVEAGSRRLDALELAKLSRALKVSMEYLI 69 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 PTV S ++ D + +L Sbjct: 70 QPPPTVLSRRAAPLTEETDTEAARSSERL 98 >gi|325845858|ref|ZP_08169056.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481764|gb|EGC84796.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 185 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ R+ +S +KL E + ++ + + E G + L+ IS+ L+ P+ F Sbjct: 4 LGKNIKNFRISQNLSLKKLAEKVDVSPSMLSQIESGKANPSLNTLKLISQHLKVPMFTLF 63 Query: 75 DVSP 78 Sbjct: 64 IEED 67 >gi|325290126|ref|YP_004266307.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324965527|gb|ADY56306.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 101 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 34/98 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR++ R + G+S L + + + + K E + L+ I E L ++ FF Sbjct: 4 GKRVKYFRDVAGISANALAKNVCLDPTTIYKIEANDAKPSLGSLERICEALGISLADFFS 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 N ++T L + + Sbjct: 64 EDNQELEPELRRLLNTAKKLTTEQRDYLQKLLDSLSKD 101 >gi|312863214|ref|ZP_07723452.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|311100750|gb|EFQ58955.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] Length = 158 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 34/95 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 1 MIGENIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYIDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + ++ I L++ + Sbjct: 61 VGEEKMLTPVEDYQLTLKIEIIKERGAAILSQLYR 95 >gi|313112940|ref|ZP_07798585.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624749|gb|EFQ08059.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 220 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 34/87 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G + R M+Q +L + L +T + V ++E+G+ + L+ +++VL ++ Sbjct: 4 KEFGAFLAQVRRERNMTQAELAQQLHVTDKAVSRWERGIGLPDINMLEPLADVLGLTLAD 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 + D + F Sbjct: 64 LMHCHDSRQKDDTPPVPLEDFFTMLRR 90 >gi|307307842|ref|ZP_07587570.1| putative phage repressor [Shewanella baltica BA175] gi|306910061|gb|EFN40499.1| putative phage repressor [Shewanella baltica BA175] Length = 217 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ +R ILG+ Q+ + + + +T Q + +E+ V L ++ VL+ + Sbjct: 9 NRIKTKRKILGLKQKDVAKLMDVTSQAISSWEREVTNPSGELLLKLANVLKVNEGWLLYG 68 Query: 77 S 77 Sbjct: 69 D 69 >gi|326778375|ref|ZP_08237640.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|326658708|gb|EGE43554.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 283 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 35/105 (33%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++K P VG +R R G+S LG + E G V A R++ Sbjct: 1 MPSRKAPTARQRRVGTELRRVREHTGLSLTGAAAMLGTDRTTISNIESGRFGVSAERVRT 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + P + + + ++ + T D L L Sbjct: 61 WAGHYGCPDHAYIEALAGMATERINGWWEDYRGHLTSDALDLAEL 105 >gi|228958063|ref|ZP_04119798.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|296502381|ref|YP_003664081.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] gi|228801580|gb|EEM48462.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|296323433|gb|ADH06361.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 404 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 2/130 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I++ LE SF Sbjct: 4 LGEKIKTLRKEKKLTQTDL-AGSELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + ++ + ++ + ++ +Q + L + V++ K + Sbjct: 63 EDDDVEIVELIQQTEKLIKTNKYDEVYEVLLPIVQKELPPTLNT-ARLYKQFVTAAAKMK 121 Query: 135 TIEEECMVEQ 144 E VE+ Sbjct: 122 DYNIEYYVEK 131 >gi|171316513|ref|ZP_02905730.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171098347|gb|EDT43152.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] Length = 152 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 15/108 (13%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R LG+ Q +L + G T +YE G L +++ + + Sbjct: 5 GERLKAERKRLGLKQAELADRAGTTNVAQSRYESGDRSPDWGYLSAVAQ-AGVDVLYVLT 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + E + + D + R ++ ++ Sbjct: 64 GQHSTLELSADEH--------------VLLAGYRSLDAQGRAGVLGMI 97 >gi|160873045|ref|YP_001557051.1| putative phage repressor [Shewanella baltica OS195] gi|160858567|gb|ABX51791.1| putative phage repressor [Shewanella baltica OS195] Length = 214 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 29/61 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ +R ILG+ Q+ + + + +T Q + +E+ V L ++ VL+ + Sbjct: 6 NRIKTKRKILGLKQKDVAKLMDVTSQAISSWEREVTNPSGELLLKLANVLKVNEGWLLYG 65 Query: 77 S 77 Sbjct: 66 D 66 >gi|159044420|ref|YP_001533214.1| putative HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912180|gb|ABV93613.1| putative HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 215 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 2/97 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ +R R G + +L G++ + K E G + LQ ++ L P++ F Sbjct: 25 AIGRALRAFRREQGTTVVELSAATGLSTGMLSKIENGQTSPSLTTLQALANALSVPLTAF 84 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 F + + + + + +G + N ++ + Sbjct: 85 FRGFEQSRAAVHTRAGEGAE--AEREGTRANHHYTLL 119 >gi|159898574|ref|YP_001544821.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891613|gb|ABX04693.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 84 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 13 INVGKRIRLRR-MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + RIR R GM+Q+ L + +GIT Q V E+G I+ + +P+ Sbjct: 4 LMIHNRIRHLRVEAHGMTQQALADHVGITRQTVIALEQGRYYPSLELAFRIALLFGTPLE 63 Query: 72 FFFDVS 77 F V Sbjct: 64 QVFQVD 69 >gi|147918990|ref|YP_687283.1| transcription regulator [uncultured methanogenic archaeon RC-I] gi|110622679|emb|CAJ37957.1| predicted transcription regulator [uncultured methanogenic archaeon RC-I] Length = 184 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 V RI+ R IL +SQE + L I+ ++YE G + AS L IS L +S Sbjct: 6 KEVAARIKELREILDISQESMASDLRISQDTYRRYENGEEDIPASILYEISRKLGVEMSI 65 Query: 73 FFDVSPTV 80 Sbjct: 66 LLTGEAPR 73 >gi|110634674|ref|YP_674882.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285658|gb|ABG63717.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 100 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R+ G+SQE + E +G V E+GV V L H ++ + + Sbjct: 8 GSNLRRYRLAAGLSQEAVAERIGADRAHVSAMERGVQNVTLLTLWHTAQAVGVKPADLLA 67 Query: 76 VSPTVCSDI 84 + + Sbjct: 68 ETDSTERAS 76 >gi|330876735|gb|EGH10884.1| DNA-binding protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 189 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 1/109 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M PV +V +R R +SQ L E G++ + + E G V + L Sbjct: 1 MHKENSPRAPVLQHVSHNVRRLRNAADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLD 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++E LE S +E + L L R + Sbjct: 61 RVAEALEVAFSDLIQAPENRDHSRINELAWAGTIPGSKAVL-LARAIAR 108 >gi|323492270|ref|ZP_08097428.1| putative transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323313583|gb|EGA66689.1| putative transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 206 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 27 LGQRIKDIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAVGLQIDMPQLF 86 Query: 75 D 75 + Sbjct: 87 E 87 >gi|319637930|ref|ZP_07992696.1| XRE family Transcriptional regulator [Neisseria mucosa C102] gi|317401085|gb|EFV81740.1| XRE family Transcriptional regulator [Neisseria mucosa C102] Length = 86 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%) Query: 17 KRIRLRRMILGMSQEKLGECL----GITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R + R ++QEKLG + + ++ +YEKG ++ + LQ I+EVLE P +F Sbjct: 9 RRFKEARKAKNLTQEKLGLAIGLDEFVASTRINRYEKGNHQPDLNTLQKIAEVLEVPPAF 68 Query: 73 FFDVSP 78 FF Sbjct: 69 FFSDDE 74 >gi|326773541|ref|ZP_08232824.1| transcriptional regulator, HTH_3 family [Actinomyces viscosus C505] gi|326636771|gb|EGE37674.1| transcriptional regulator, HTH_3 family [Actinomyces viscosus C505] Length = 76 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 28/67 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D V RI + R +S+ +L E LG+ +Q V E+G I+ + P+ Sbjct: 5 DDVVHNRIAVLRADRRVSRRELAEALGVHYQTVGYLERGEYAPSLHLALRIARYFDVPVE 64 Query: 72 FFFDVSP 78 F + Sbjct: 65 SVFSLEE 71 >gi|297160623|gb|ADI10335.1| helix-turn-helix domain-containing protein [Streptomyces bingchenggensis BCW-1] Length = 80 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V R+ + R +S++ L E +G+ +Q + E+G I++ P+ Sbjct: 4 QVHNRLAMVRAERKVSRQSLAESVGVHYQTIGYIERGQYNPSLDLALKIAKFFGLPVEAL 63 Query: 74 FDVSP 78 F + P Sbjct: 64 FSLEP 68 >gi|229017069|ref|ZP_04173988.1| Transcriptional regulator, Xre [Bacillus cereus AH1273] gi|229023250|ref|ZP_04179760.1| Transcriptional regulator, Xre [Bacillus cereus AH1272] gi|228738044|gb|EEL88530.1| Transcriptional regulator, Xre [Bacillus cereus AH1272] gi|228744242|gb|EEL94325.1| Transcriptional regulator, Xre [Bacillus cereus AH1273] Length = 404 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 4/101 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSKLTKSMLSQIENGKATPSMKTLQYIAEKLECEASFLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +I + I ++ + + I ++ Sbjct: 63 EDDD---GEIVELITKMEQLIKENKCDEVYKALLPIVQKEL 100 >gi|228923759|ref|ZP_04087037.1| hypothetical protein bthur0011_47340 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229076410|ref|ZP_04209375.1| hypothetical protein bcere0024_47140 [Bacillus cereus Rock4-18] gi|228706845|gb|EEL59053.1| hypothetical protein bcere0024_47140 [Bacillus cereus Rock4-18] gi|228835888|gb|EEM81251.1| hypothetical protein bthur0011_47340 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 79 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ + Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAKIFNVSVE 65 Query: 72 FFFDVSPTVCSDIS 85 F + D Sbjct: 66 EIFTLVEGEEDDEE 79 >gi|225076898|ref|ZP_03720097.1| hypothetical protein NEIFLAOT_01949 [Neisseria flavescens NRL30031/H210] gi|224951784|gb|EEG32993.1| hypothetical protein NEIFLAOT_01949 [Neisseria flavescens NRL30031/H210] Length = 84 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 30/84 (35%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + GK +R R + +SQE L E + + E+G L ++ L Sbjct: 1 MKSEILKQFGKHVRHLRQLQDLSQETLAEKANMHRTYIGMIERGERNPALLNLIRLASAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENN 90 + + V E+N Sbjct: 61 DISLPELLTFKDYVNDGNCDNESN 84 >gi|221231799|ref|YP_002510951.1| epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] gi|220674259|emb|CAR68796.1| putative epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] Length = 158 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 34/95 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHDLTQHEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + E ++ + L+R + Sbjct: 61 VGENKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|197284938|ref|YP_002150810.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227355341|ref|ZP_03839742.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] gi|194682425|emb|CAR42298.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|227164565|gb|EEI49436.1| fimbrial operon regulator [Proteus mirabilis ATCC 29906] Length = 91 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 35/72 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + G I+ +R LG++ + L L ++ QQ+ +YE G + + L I +L Sbjct: 15 MSDFFNKKTGLFIKYKRKELGLTGQDLAIILNVSQQQISRYENGTTNITVTLLNKILMIL 74 Query: 67 ESPISFFFDVSP 78 +S S F + Sbjct: 75 DSSWSEFLTFNE 86 >gi|153212196|ref|ZP_01947991.1| hypothetical protein A55_A0826 [Vibrio cholerae 1587] gi|124116748|gb|EAY35568.1| hypothetical protein A55_A0826 [Vibrio cholerae 1587] Length = 505 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G ++R R ++ E L + E+G L+ I+EV Sbjct: 13 FLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVEMLEVIAEVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + +F D P Sbjct: 73 QKDPIWFLDDEPEQIDITPE 92 >gi|145593721|ref|YP_001158018.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145303058|gb|ABP53640.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 196 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 4/114 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ + R+R R LG S ++L ++ + + E G + L ++ L Sbjct: 5 NEIEKVIRTRLRALRTTLGFSLDELAARTNLSPSTISRIETGKRTISLDVLLPLAAALHV 64 Query: 69 PISFFFDVSPTVCSDISSEEN----NVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + DV I + +S P+G + K ++ Sbjct: 65 DLDSLLDVRNDEDVVIRPMPDRGGERTTWMLSRPNGRTIALKVRLEPTRKTLEQ 118 >gi|27467714|ref|NP_764351.1| hypothetical protein SE0796 [Staphylococcus epidermidis ATCC 12228] gi|57866618|ref|YP_188269.1| Cro/CI family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|251810551|ref|ZP_04825024.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|293366914|ref|ZP_06613589.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315258|gb|AAO04393.1|AE016746_183 conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gi|57637276|gb|AAW54064.1| transcriptional regulator, Cro/CI family [Staphylococcus epidermidis RP62A] gi|251805962|gb|EES58619.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|291318889|gb|EFE59260.1| cro/CI family transcriptional regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329732828|gb|EGG69174.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU144] gi|329734233|gb|EGG70549.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU028] gi|329735546|gb|EGG71834.1| DNA-binding helix-turn-helix protein [Staphylococcus epidermidis VCU045] Length = 179 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G ++R R I ++QE+L E ++ + + E ++ EVL + S Sbjct: 1 MDIGYKLRNLRRIKNLTQEELAERTDLSKGYISQIESNHASPSMETFLNLIEVLGTSASD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF +E + D Sbjct: 61 FFKEPSDEKVLYKKKEQTIYD 81 >gi|150018568|ref|YP_001310822.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905033|gb|ABR35866.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 359 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R ++QE+L +GI+ V K+E G + S L ++ L + I Sbjct: 6 IGETILKLRKERKLTQEELALMIGISAGAVSKWENGNSMPDISILAPLARALNTSIDTLL 65 Query: 75 DVSPTVCSDISSEENNVMDFI 95 + + + + + + Sbjct: 66 SFHKELSEEEVNNIKSKLTKL 86 >gi|313680009|ref|YP_004057748.1| XRE family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313152724|gb|ADR36575.1| transcriptional regulator, XRE family [Oceanithermus profundus DSM 14977] Length = 71 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ + R G SQ L E LG++ Q V EKG I+ V I F+ Sbjct: 3 NRLPVLRAERGWSQAALAERLGVSRQTVNAIEKGRYDPSLPLAFKIAAVFGLAIEDVFEP 62 Query: 77 SPTVC 81 + Sbjct: 63 EESEA 67 >gi|303254120|ref|ZP_07340235.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS455] gi|302598953|gb|EFL65984.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS455] Length = 287 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + S++S+ + + + L + Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYDDLEYIYR 96 >gi|300854943|ref|YP_003779927.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300435058|gb|ADK14825.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 64 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I++ R LG+ QE + L +T Q + E ++++L + + F Sbjct: 3 NNIKVLRKQLGLRQEDVANALNVTRQTINAIENSKYNPTLELAMRLAKLLNTTVDELF 60 >gi|271966776|ref|YP_003340972.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509951|gb|ACZ88229.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 198 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 39/111 (35%), Gaps = 3/111 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ + R+ R+ G S E+L + G++ + + E+ A+ L + + Sbjct: 17 VEARLADRLAQLRVERGWSLEELAQRTGVSRSTLSRLERMEISPTAAMLGKLCAAYGRTM 76 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 S + + V+ T R + +R +I+E Sbjct: 77 SQLLAEAEAEPPQTVRADRQVVWRDETSG---FTRRSVSPPHPGLRGEIVE 124 >gi|237746175|ref|ZP_04576655.1| predicted protein [Oxalobacter formigenes HOxBLS] gi|229377526|gb|EEO27617.1| predicted protein [Oxalobacter formigenes HOxBLS] Length = 131 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R LG+SQ +L E +GI+ + + YE G A L + + + + + Sbjct: 4 IGERLKEERKRLGLSQARLCELMGISRKTLFGYETGERSPTAVFLAALCD-HQFDVDYIL 62 Query: 75 DVSPTVCSDISSEE 88 E+ Sbjct: 63 KGMRKTPELPEIEK 76 >gi|148994361|ref|ZP_01823604.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP9-BS68] gi|289168600|ref|YP_003446869.1| transcriptional regulator [Streptococcus mitis B6] gi|293364230|ref|ZP_06610956.1| XRE family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|307702415|ref|ZP_07639371.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|315611783|ref|ZP_07886705.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|322375921|ref|ZP_08050432.1| conserved domain protein [Streptococcus sp. C300] gi|147927292|gb|EDK78325.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP9-BS68] gi|288908167|emb|CBJ23009.1| transcriptional regulator [Streptococcus mitis B6] gi|291317076|gb|EFE57503.1| XRE family transcriptional regulator [Streptococcus oralis ATCC 35037] gi|307623997|gb|EFO02978.1| helix-turn-helix family protein [Streptococcus oralis ATCC 35037] gi|315316198|gb|EFU64228.1| XRE family transcriptional regulator [Streptococcus sanguinis ATCC 49296] gi|321279189|gb|EFX56231.1| conserved domain protein [Streptococcus sp. C300] Length = 64 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R LG+SQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLFWE 61 Query: 77 SP 78 Sbjct: 62 DD 63 >gi|160878433|ref|YP_001557401.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427099|gb|ABX40662.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 276 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 14/113 (12%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N+K+ I +R I ++Q++L LG+T + V K+E+G++ S L Sbjct: 1 MDNEKMA--------LFIADQRKIKKLTQKELAAKLGVTDKAVSKWERGLSCPDISLLST 52 Query: 62 ISEVLESPISFFFDV------SPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 +S++L + T I D ++ + F Sbjct: 53 LSDILGVTTGELLNGERAVMLENTNVDSIVESTIQYADTVTKRKSKDIRNAFA 105 >gi|154247940|ref|YP_001418898.1| XRE family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154162025|gb|ABS69241.1| putative transcriptional regulator, XRE family [Xanthobacter autotrophicus Py2] Length = 72 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ R G++QE + G + Q + E+G L +++ L Sbjct: 7 VGRNFARLRQEKGLTQEDVEARSGFSQQYISGLERGRRNPTVITLYELAQALGVSHEEL 65 >gi|332668877|ref|YP_004451885.1| XRE family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332337915|gb|AEE44498.1| transcriptional regulator, XRE family [Cellulomonas fimi ATCC 484] Length = 74 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 1/66 (1%) Query: 17 KRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RIR R M+Q +L +G+T Q V E+G I+ VL P+ F Sbjct: 9 NRIRALRFAADEMTQAELARRIGVTRQTVIAIEQGRYSPTLEMAFQIARVLGVPLDEVFQ 68 Query: 76 VSPTVC 81 Sbjct: 69 YPDDDG 74 >gi|317130529|ref|YP_004096811.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315475477|gb|ADU32080.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 264 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-DVSPT 79 R G++QE++ I + E G G +I+ VL+ FF + Sbjct: 8 KLRKSKGLTQEQVASAAFIDRAFFSQVETGKRNPGFDVAANIANVLDFDPMIFFQEHLKE 67 Query: 80 VCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + S +S +N+ + + ++ + +I Sbjct: 68 IPSSLSLPNDNIHHNLQSISNGEILYLYKEI 98 >gi|302382071|ref|YP_003817894.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192699|gb|ADL00271.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 69 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G R++ R G++Q +L + G++ + + E GV ++ L + + Sbjct: 3 DPRLGSRLKEIRTEAGLTQAELADRAGVSRKTINTVENGVFVPSTLLALSLARALGTTVE 62 Query: 72 FFF 74 F Sbjct: 63 GLF 65 >gi|260773859|ref|ZP_05882774.1| predicted transcriptional regulator [Vibrio metschnikovii CIP 69.14] gi|260610820|gb|EEX36024.1| predicted transcriptional regulator [Vibrio metschnikovii CIP 69.14] Length = 207 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 30/74 (40%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + N + +G RI+ R LG++ E+ + G+ + K E +Q Sbjct: 15 AKEDRSENIEPLKLGPRIKQVRANLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQK 74 Query: 62 ISEVLESPISFFFD 75 ++ L+ + FD Sbjct: 75 LAHGLQIDMPQLFD 88 >gi|326204104|ref|ZP_08193965.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] gi|325985871|gb|EGD46706.1| Cupin 2 conserved barrel domain protein [Clostridium papyrosolvens DSM 2782] Length = 184 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ R I G++ E L L I+ + + YE G + S L I+ +S Sbjct: 8 IASRIKELREISGITVEALAAELKISEEAYRSYESGETDIPVSFLYQIANKFNVELSAII 67 Query: 75 DVSPTV 80 Sbjct: 68 TGDAPK 73 >gi|269122513|ref|YP_003310690.1| XRE family transcriptional regulator [Sebaldella termitidis ATCC 33386] gi|268616391|gb|ACZ10759.1| transcriptional regulator, XRE family [Sebaldella termitidis ATCC 33386] Length = 127 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++GKRI+ RR LG +QE+L E + + + K E G+N + S++ +++L++ S Sbjct: 1 MSIGKRIKKRREELGYTQEQLAEKMGYKSKSTINKIEAGINDITQSKITAFAKILKTTPS 60 Query: 72 FFFDVSPTVCSDISSEENNVMD 93 + + + + D Sbjct: 61 YLMGWEDEESEIYKVDTSILTD 82 >gi|225378006|ref|ZP_03755227.1| hypothetical protein ROSEINA2194_03666 [Roseburia inulinivorans DSM 16841] gi|225210159|gb|EEG92513.1| hypothetical protein ROSEINA2194_03666 [Roseburia inulinivorans DSM 16841] Length = 120 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 37/87 (42%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N+K + VG RIR +R+ LG SQ+++ E + + E+G + + IS Sbjct: 2 NRKREAYDRLAVGDRIRKKRVQLGFSQDEVAERIDRAPKYCSDIERGTCGMSTETMLAIS 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENN 90 E L+ + + T E + Sbjct: 62 ECLDMSLDYMMFGEQTDEEARRQENDE 88 >gi|210610950|ref|ZP_03288675.1| hypothetical protein CLONEX_00865 [Clostridium nexile DSM 1787] gi|210152250|gb|EEA83257.1| hypothetical protein CLONEX_00865 [Clostridium nexile DSM 1787] Length = 198 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF- 72 +GK I+ +R ++Q++ + LG + + +QKYE G + L+ I+ L P Sbjct: 16 EIGKAIQKQRRAQKITQKEFAQRLGKSERTIQKYESGEILLKIDVLKQIANELNVPWQEL 75 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 F D ++ E +F + D + ++ D Sbjct: 76 LFAKDTNTPKDNTTAEYPAYEFHTMSDVINALFAITELTD 115 >gi|182684890|ref|YP_001836637.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae CGSP14] gi|303260328|ref|ZP_07346298.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP-BS293] gi|303262476|ref|ZP_07348418.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP14-BS292] gi|303265106|ref|ZP_07351019.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS397] gi|303266032|ref|ZP_07351927.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS457] gi|303268036|ref|ZP_07353837.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS458] gi|182630224|gb|ACB91172.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae CGSP14] gi|301802633|emb|CBW35399.1| putative transcriptional regulator [Streptococcus pneumoniae INV200] gi|302636376|gb|EFL66869.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP14-BS292] gi|302638494|gb|EFL68959.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP-BS293] gi|302642396|gb|EFL72742.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS458] gi|302644473|gb|EFL74725.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS457] gi|302645323|gb|EFL75557.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae BS397] Length = 287 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + S++S+ + + + L + Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYDDLEYIYR 96 >gi|148360856|ref|YP_001252063.1| hypothetical protein LPC_2816 [Legionella pneumophila str. Corby] gi|296106080|ref|YP_003617780.1| hypothetical protein lpa_00792 [Legionella pneumophila 2300/99 Alcoy] gi|148282629|gb|ABQ56717.1| hypothetical protein LPC_2816 [Legionella pneumophila str. Corby] gi|295647981|gb|ADG23828.1| hypothetical protein lpa_00792 [Legionella pneumophila 2300/99 Alcoy] Length = 224 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 5/101 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG---ASR 58 + N +G+RI+ RM+ G+S++ L E GI+ +Q +E G N + A+ Sbjct: 1 MKNATKVKKDSSAMGQRIKRARMLAGLSRKDLEEKHGISIHTLQSWELGRNPLNKAKAAS 60 Query: 59 LQHISEVLES--PISFFFDVSPTVCSDISSEENNVMDFIST 97 L I + I + + S I +E N T Sbjct: 61 LVGILNQYDVSCSIDWLLEGIGKGPSVIENEFQNYPFLADT 101 >gi|117928510|ref|YP_873061.1| XRE family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648973|gb|ABK53075.1| transcriptional regulator, XRE family [Acidothermus cellulolyticus 11B] Length = 163 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 2/80 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISEVL 66 N +G R+R R G+S + E ++ V YE+G V RL ++E Sbjct: 2 NDYAKALGARLRAIRTQQGLSLHAVEEKSQGKWKAVVVGSYERGDRAVTVQRLAELAEFY 61 Query: 67 ESPISFFFDVSPTVCSDISS 86 P++ + + Sbjct: 62 GVPVAELLPDAEPSGAAEPP 81 >gi|116249226|ref|YP_765067.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115253876|emb|CAK12271.1| putative transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 90 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 31/77 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V +G +R R+ G+SQE+L I V + E+G+ V + L+ + VL Sbjct: 2 DVRQTIGWNLRRLRVAKGLSQERLALEAEIDRSYVGRVERGMENVTVATLEAFARVLSVN 61 Query: 70 ISFFFDVSPTVCSDISS 86 +S F Sbjct: 62 VSALFAEIDPRAPKPKP 78 >gi|104781203|ref|YP_607701.1| transcriptional regulator [Pseudomonas entomophila L48] gi|95110190|emb|CAK14897.1| putative transcriptional regulator [Pseudomonas entomophila L48] Length = 181 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++L R +SQ +L G+T + + E+ S L+ + E + ++ FF Sbjct: 4 GTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRVSPSVSSLKKLLEGIPMSLAEFFS 63 Query: 76 VSPTVCSD 83 V + Sbjct: 64 FDEPVREE 71 >gi|327438377|dbj|BAK14742.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 67 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+++ R+ +SQ++L + +G+T Q + E G S I L + F Sbjct: 5 RLKMARIEHDLSQDELAKKVGVTRQTIGLIELGKYNPTLSVCIAICRTLNRTLDELFWDE 64 Query: 78 PTV 80 + Sbjct: 65 QSE 67 >gi|322385349|ref|ZP_08058994.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321270608|gb|EFX53523.1| transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 158 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|315282272|ref|ZP_07870716.1| DNA-binding domain-containing protein [Listeria marthii FSL S4-120] gi|313614085|gb|EFR87785.1| DNA-binding domain-containing protein [Listeria marthii FSL S4-120] Length = 306 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 6/116 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G +++ R G+S + L + I + + E+G V + +E + Sbjct: 3 ELGDKLKQARREKGLSLDDLQQITKIQKRYLVAIEEGNYAVMPGKFYARAFIKQYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + FD + + +E + + R + +++ Sbjct: 63 LDSTTLFDEFESEVPETPQQEVVNNEPTRVQSKRNPIPAQAVGNQTNARNRFFDIL 118 >gi|289643065|ref|ZP_06475196.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289507109|gb|EFD28077.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 166 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 6/108 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISEVLESPI 70 +G R+R R G+S + E ++ V YE+G V RL ++E P+ Sbjct: 6 KALGARLRAIRTQQGLSLHGVEEKSHGRWKAVVVGSYERGDRAVTVQRLSELAEFYGVPV 65 Query: 71 SFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 V+P S + + + G L RY I + Sbjct: 66 GELLPEGSTVAPLEQSPRIVLDLERLSQVPKEHGGPLARYAATIQSQR 113 >gi|290579706|ref|YP_003484098.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|254996605|dbj|BAH87206.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 82 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 29/76 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R I +SQ +L + L +T Q + EKG I++ + I F Sbjct: 5 RIQELRKINKLSQSELADALSVTRQTIISLEKGRYNASLELAYKIAKYFGTTIEDVFIFE 64 Query: 78 PTVCSDISSEENNVMD 93 D ++ + Sbjct: 65 DENRGDDNNVSKFRKE 80 >gi|229079535|ref|ZP_04212073.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] gi|228703760|gb|EEL56208.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] Length = 292 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ F Sbjct: 6 LGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYIF 64 Query: 75 DVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + D + +L + + Sbjct: 65 ALTKNKKIKYIENVKCVMRDCVKQKQYNELYEIVKKEKNDN 105 >gi|224823540|ref|ZP_03696649.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224603995|gb|EEG10169.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 205 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 34/81 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V V +++ R +S ++L G++ + + EK + + L I+ L Sbjct: 16 HSVSQAVAAKLKQHRKKQKLSLDELSRRAGVSKGMLVEIEKCIANPSIAILCKIAAALGV 75 Query: 69 PISFFFDVSPTVCSDISSEEN 89 ++ DV+ + + ++ Sbjct: 76 SVADIVDVASAPAARLIEGQD 96 >gi|195977658|ref|YP_002122902.1| transcriptional regulator PlcR [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974363|gb|ACG61889.1| transcriptional regulator PlcR [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 297 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEK-LGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + I +GKRIR R+ G +Q + +T +Q+ + E G + ++ +SE L Sbjct: 3 DIKIEIGKRIRTARLDKGFTQIDICDDESELTIRQLARIENGQAMITLPKIIFLSEKLGI 62 Query: 69 PISFFFDVSPT 79 P+ D Sbjct: 63 PVQDLIDEKIE 73 >gi|187777701|ref|ZP_02994174.1| hypothetical protein CLOSPO_01293 [Clostridium sporogenes ATCC 15579] gi|187774629|gb|EDU38431.1| hypothetical protein CLOSPO_01293 [Clostridium sporogenes ATCC 15579] Length = 130 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 1/92 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FD 75 ++ R G+SQ++LG L ++ Q + K+E G +L + + E + D Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDELVMD 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 V + N ++ I + + + Sbjct: 65 VKAKESTKTEPLVMNRLETIIDSIDRENVKMY 96 >gi|196048279|ref|ZP_03115456.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196021016|gb|EDX59746.1| DNA-binding protein [Bacillus cereus 03BB108] Length = 184 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI- 70 +IN+G++I + R G++ ++L E IT + + EKG+ L+ IS L P+ Sbjct: 3 NINIGEKIMVFRKGAGLTSKRLAELSDITPSMLSQIEKGITNPSLQTLKLISLALNIPLF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST 97 +FF + + T + + + + F + Sbjct: 63 NFFLEDTNTEELVVRANQRKKITFPES 89 >gi|167564668|ref|ZP_02357584.1| DNA-binding protein [Burkholderia oklahomensis EO147] Length = 200 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 30/89 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 23 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 82 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 + +++ QL Sbjct: 83 AQPKAPETIRVDGPHDIPTLAGHDAQYQL 111 >gi|149185124|ref|ZP_01863441.1| transcriptional regulator, XRE family protein [Erythrobacter sp. SD-21] gi|148831235|gb|EDL49669.1| transcriptional regulator, XRE family protein [Erythrobacter sp. SD-21] Length = 67 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R + SQ++L + L ++ Q V E G I++V E PI F+ Sbjct: 7 NRLKVLRAMRDWSQQELADRLEVSRQSVNAIETGRYDPSLPLAFKIADVFEMPIEDIFER 66 Query: 77 S 77 Sbjct: 67 D 67 >gi|116327819|ref|YP_797539.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120563|gb|ABJ78606.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 114 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++R R+ + ++Q ++ E LG + K E G R+ + E+ P +F+ Sbjct: 52 NQLRAARIEVNLTQAQVSERLGKYQSYISKVESGKKRLFIEDFIRLCELYNKPPEYFYS 110 >gi|110801073|ref|YP_695499.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|168211126|ref|ZP_02636751.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|110675720|gb|ABG84707.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|170710868|gb|EDT23050.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] Length = 348 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 11/142 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ +R G++QE++ LG++ V K+EKG + L ++ +L+ ++ Sbjct: 1 MRINEIIKEKRNSQGLTQEQVAMYLGVSTPAVNKWEKGTCYPDITLLPALARLLKVDLNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN--RYFIQIDDVKVRQKIIELVRSI---- 126 + N + I+ DG + + +I + K+I V ++ Sbjct: 61 LLSFKEDLSEQEIGVFVNDLVKIANNDGFHVAFEKAMDKIYEYPTCDKLILTVSTVMQGS 120 Query: 127 -----VSSEKKYRTIEEECMVE 143 ++KY EE ++ Sbjct: 121 IYMFGADDKEKYEKQIEEFYIK 142 >gi|27658148|gb|AAO21102.1|U49456_5 unknown [Carnobacterium maltaromaticum] Length = 301 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 47/109 (43%), Gaps = 7/109 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I+ +R+ G++Q +L E + T + E G + S L ++E L S + Sbjct: 5 IGEEIKSKRLKRGLTQSQLAENI-CTQATISNLENGASVPTISILLKLAERLNIEFSNIY 63 Query: 75 D---VSPTVCSDISSEENNVMDFISTPDGLQLNR---YFIQIDDVKVRQ 117 D + + I E + + + L+L F +++ + R+ Sbjct: 64 DYTLDNENKNNPIFKEVRELCSKVKHKEALELLETRIKFDELETIYDRK 112 >gi|75759185|ref|ZP_00739288.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228899110|ref|ZP_04063382.1| hypothetical protein bthur0014_3380 [Bacillus thuringiensis IBL 4222] gi|228906175|ref|ZP_04070064.1| hypothetical protein bthur0013_3600 [Bacillus thuringiensis IBL 200] gi|228937680|ref|ZP_04100316.1| hypothetical protein bthur0008_3590 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228950943|ref|ZP_04113064.1| hypothetical protein bthur0006_3740 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228956851|ref|ZP_04118636.1| hypothetical protein bthur0005_3900 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228970568|ref|ZP_04131218.1| hypothetical protein bthur0003_3590 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977138|ref|ZP_04137539.1| hypothetical protein bthur0002_3570 [Bacillus thuringiensis Bt407] gi|229077745|ref|ZP_04210374.1| hypothetical protein bcere0023_4470 [Bacillus cereus Rock4-2] gi|229125885|ref|ZP_04254910.1| hypothetical protein bcere0015_3490 [Bacillus cereus BDRD-Cer4] gi|229148790|ref|ZP_04277039.1| hypothetical protein bcere0011_3610 [Bacillus cereus m1550] gi|74493347|gb|EAO56460.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228634678|gb|EEK91258.1| hypothetical protein bcere0011_3610 [Bacillus cereus m1550] gi|228657543|gb|EEL13356.1| hypothetical protein bcere0015_3490 [Bacillus cereus BDRD-Cer4] gi|228705567|gb|EEL57924.1| hypothetical protein bcere0023_4470 [Bacillus cereus Rock4-2] gi|228782586|gb|EEM30763.1| hypothetical protein bthur0002_3570 [Bacillus thuringiensis Bt407] gi|228789155|gb|EEM37084.1| hypothetical protein bthur0003_3590 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228802892|gb|EEM49725.1| hypothetical protein bthur0005_3900 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808670|gb|EEM55168.1| hypothetical protein bthur0006_3740 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228821967|gb|EEM67959.1| hypothetical protein bthur0008_3590 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853584|gb|EEM98352.1| hypothetical protein bthur0013_3600 [Bacillus thuringiensis IBL 200] gi|228860551|gb|EEN04939.1| hypothetical protein bthur0014_3380 [Bacillus thuringiensis IBL 4222] Length = 83 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 22 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|330966069|gb|EGH66329.1| DNA-binding protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 189 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 36/109 (33%), Gaps = 1/109 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M PV +V +R R +SQ L E G++ + + E G V + L Sbjct: 1 MHKENSPRAPVLQHVSHNVRRLRNAADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLD 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++E LE S +E + L L R + Sbjct: 61 RVAEALEVVFSDLIQAPENRDHSRINELAWAGTIPGSKAVL-LARAIAR 108 >gi|331699234|ref|YP_004335473.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326953923|gb|AEA27620.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans CB1190] Length = 196 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 26/83 (31%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + V VG R+ R ++ L GI+ + + E G R L Sbjct: 1 MTADPTDQGAVLARVGPRLAELRRERDLTLAALSRTTGISTSTLSRLESGHRRATLELLL 60 Query: 61 HISEVLESPISFFFDVSPTVCSD 83 I+ + P+V Sbjct: 61 PIARAYGVGLDDLVGAEPSVPDP 83 >gi|323483946|ref|ZP_08089320.1| hypothetical protein HMPREF9474_01069 [Clostridium symbiosum WAL-14163] gi|323693455|ref|ZP_08107666.1| transcriptional regulator [Clostridium symbiosum WAL-14673] gi|323402737|gb|EGA95061.1| hypothetical protein HMPREF9474_01069 [Clostridium symbiosum WAL-14163] gi|323502510|gb|EGB18361.1| transcriptional regulator [Clostridium symbiosum WAL-14673] Length = 74 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 25/56 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RIR R ++Q+ LG+ L ++ + +YE + +++ + + + Sbjct: 5 RIRDLREDNDLTQDYLGKVLNVSQRTYSRYENDERAIPIEVFSKLADFYNTSVDYL 60 >gi|313608866|gb|EFR84643.1| DNA-binding domain-containing protein [Listeria monocytogenes FSL F2-208] Length = 330 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 38/119 (31%), Gaps = 6/119 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISE 64 + +G +++ R G+S + L + I + + E+G V + +E Sbjct: 21 ILTELGDKLKQARREKGLSLDDLQQVTKIQKRYLVAIEEGNYAVMPGKFYARAFIKQYAE 80 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + FD + + +E + + R + +++ Sbjct: 81 AVGLDSATLFDEFESEVPETPQQEVVNNEPTRVQSKRNPMPAQSVGNQGNARNRFFDIL 139 >gi|310819908|ref|YP_003952266.1| phage-like DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|309392980|gb|ADO70439.1| Phage-like DNA-binding protein [Stigmatella aurantiaca DW4/3-1] Length = 401 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 29/71 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+ R+ G+ L E + I+ + YEKG + A L+ + + L+ P +F Sbjct: 8 FIGSRLVEARLERGIPVRALAERVEISVPAIYGYEKGASSPRADVLRRLCDALDVPERYF 67 Query: 74 FDVSPTVCSDI 84 Sbjct: 68 LMPVEEQTGSA 78 >gi|229150689|ref|ZP_04278903.1| Transcriptional regulator, Xre [Bacillus cereus m1550] gi|228632776|gb|EEK89391.1| Transcriptional regulator, Xre [Bacillus cereus m1550] Length = 292 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ F Sbjct: 6 LGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYIF 64 Query: 75 DVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + D + + +L + + Sbjct: 65 ALTKNKKIKYIENVKCVMRDCVKQKEYNELYEIVKKEKNEN 105 >gi|206889754|ref|YP_002249639.1| helix-turn-helix domain protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741692|gb|ACI20749.1| helix-turn-helix domain protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 419 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R+ +SQ++L E + +T + + E I + L S Sbjct: 247 IGNKLREIRISRNISQKELAEKVNLTPGFISQMENNQIAPSIVSFMQICDALGVKASEIL 306 Query: 75 DVSPTVCS 82 + + T Sbjct: 307 NETKTEEK 314 >gi|195978947|ref|YP_002124191.1| putative HTH-type transcriptional regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225869400|ref|YP_002745348.1| DNA-binding protein [Streptococcus equi subsp. zooepidemicus] gi|225871398|ref|YP_002747345.1| DNA-binding protein [Streptococcus equi subsp. equi 4047] gi|195975652|gb|ACG63178.1| putative HTH-type transcriptional regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225700802|emb|CAW95495.1| putative DNA-binding protein [Streptococcus equi subsp. equi 4047] gi|225702676|emb|CAX00774.1| putative DNA-binding protein [Streptococcus equi subsp. zooepidemicus] Length = 67 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R G+SQ L + + +T Q + EKG ++ I F Sbjct: 3 NRIQELRKSRGISQADLADMMCVTRQTIISLEKGRYNASLELAYKLATFFNLTIEDVF 60 >gi|254384422|ref|ZP_04999764.1| hypothetical protein SSAG_04066 [Streptomyces sp. Mg1] gi|194343309|gb|EDX24275.1| hypothetical protein SSAG_04066 [Streptomyces sp. Mg1] Length = 462 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 1/80 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R G+SQ L ++ + E G L+ I+ L Sbjct: 7 LGSRIRRLRREAGLSQMDLAGE-NLSPSYISLLEAGKRTPSPEVLEQIAARLGCAPGQLL 65 Query: 75 DVSPTVCSDISSEENNVMDF 94 ++ D + + Sbjct: 66 ELLAPERHDTLQTDLRYAEI 85 >gi|168210486|ref|ZP_02636111.1| immunity repressor protein [Clostridium perfringens B str. ATCC 3626] gi|170711430|gb|EDT23612.1| immunity repressor protein [Clostridium perfringens B str. ATCC 3626] Length = 199 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ R++ M+Q++L + L + +QKYE + L + +VL + Sbjct: 4 LGKRIKKYRILKNMTQQQLADKLNKSKSTIQKYESDSVNLNTDTLNILCDVLNIDLFTLL 63 Query: 75 DVSPTVCS 82 T Sbjct: 64 YGEKTEEE 71 >gi|254254842|ref|ZP_04948159.1| transcriptional regulator XRE family with cupin sensor domain [Burkholderia dolosa AUO158] gi|124899487|gb|EAY71330.1| transcriptional regulator XRE family with cupin sensor domain [Burkholderia dolosa AUO158] Length = 203 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERRLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P I + + + ++ DG R + ID Sbjct: 86 S-QPKTPETIRVDGPHDIPTLAGHDGRYQLRVWGPID 121 >gi|115359639|ref|YP_776777.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115284927|gb|ABI90443.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ambifaria AMMD] Length = 180 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 30/79 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L + G+T + K E+G++ + +S+ L + F S Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNIDVEQLFSES 63 Query: 78 PTVCSDISSEENNVMDFIS 96 + + Sbjct: 64 HNRELITVTRAGERTAMGA 82 >gi|30262515|ref|NP_844892.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47778059|ref|YP_019162.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|52142975|ref|YP_083853.1| DNA-binding protein [Bacillus cereus E33L] gi|165868912|ref|ZP_02213572.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167631977|ref|ZP_02390304.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167637695|ref|ZP_02395974.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170685312|ref|ZP_02876536.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170704891|ref|ZP_02895357.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177649731|ref|ZP_02932733.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190565261|ref|ZP_03018181.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196040422|ref|ZP_03107723.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218903655|ref|YP_002451489.1| DNA-binding protein [Bacillus cereus AH820] gi|227814666|ref|YP_002814675.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228915109|ref|ZP_04078706.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927582|ref|ZP_04090634.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933813|ref|ZP_04096659.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228946161|ref|ZP_04108495.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229600860|ref|YP_002866842.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254685091|ref|ZP_05148951.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254722499|ref|ZP_05184287.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254737541|ref|ZP_05195244.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254743274|ref|ZP_05200959.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254751856|ref|ZP_05203893.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254760376|ref|ZP_05212400.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|301054058|ref|YP_003792269.1| DNA-binding protein [Bacillus anthracis CI] gi|30257147|gb|AAP26378.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47551764|gb|AAT31637.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|51976444|gb|AAU17994.1| DNA-binding protein [Bacillus cereus E33L] gi|164715638|gb|EDR21155.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167514244|gb|EDR89611.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167532275|gb|EDR94911.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170130692|gb|EDS99553.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170670672|gb|EDT21411.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084805|gb|EDT69863.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190563288|gb|EDV17253.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196028907|gb|EDX67513.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|218535205|gb|ACK87603.1| DNA-binding protein [Bacillus cereus AH820] gi|227004640|gb|ACP14383.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228813507|gb|EEM59794.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228825885|gb|EEM71672.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832062|gb|EEM77647.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844538|gb|EEM89592.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265268|gb|ACQ46905.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|300376227|gb|ADK05131.1| DNA-binding protein [Bacillus cereus biovar anthracis str. CI] Length = 66 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RI + R G +QE+L + +G++ Q + EK I+ V E PI+ Sbjct: 1 MLHNRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKPITDV 60 Query: 74 FDVSPT 79 FD Sbjct: 61 FDYQEE 66 >gi|47568826|ref|ZP_00239520.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228983895|ref|ZP_04144089.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229154395|ref|ZP_04282515.1| Transcriptional regulator [Bacillus cereus ATCC 4342] gi|229159774|ref|ZP_04287782.1| Transcriptional regulator [Bacillus cereus R309803] gi|229171478|ref|ZP_04299062.1| Transcriptional regulator [Bacillus cereus MM3] gi|47554502|gb|EAL12859.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|228612016|gb|EEK69254.1| Transcriptional regulator [Bacillus cereus MM3] gi|228623711|gb|EEK80529.1| Transcriptional regulator [Bacillus cereus R309803] gi|228629219|gb|EEK85926.1| Transcriptional regulator [Bacillus cereus ATCC 4342] gi|228775874|gb|EEM24246.1| Transcriptional regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324324735|gb|ADY19995.1| transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 66 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R+ L ++Q++L E +G+T Q + EKG I ++ ++ F Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLFWE 63 Query: 77 SPT 79 Sbjct: 64 EEE 66 >gi|323499242|ref|ZP_08104219.1| putative transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323315630|gb|EGA68664.1| putative transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 207 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGDRIKDIRGKLGLTLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAMGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|322516911|ref|ZP_08069808.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] gi|322124534|gb|EFX96016.1| transcriptional regulator [Streptococcus vestibularis ATCC 49124] Length = 158 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|307701883|ref|ZP_07638892.1| transcriptional regulator [Streptococcus mitis NCTC 12261] gi|307616698|gb|EFN95886.1| transcriptional regulator [Streptococcus mitis NCTC 12261] gi|332362037|gb|EGJ39839.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 227 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 10/110 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ +R G+SQ +L LGI+ +E G + + L +S++L +F S Sbjct: 6 KLKEKRESQGLSQSQLASSLGISRVSYFNWESGKTKPNQNNLSKLSQILTVDPCYF--ES 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + + + +L K +K++++ Sbjct: 64 EYEIVETYLKLTEKNQKATLHYATELL--------NKQNEKVVDIPERFA 105 >gi|307579856|gb|ADN63825.1| XRE family transcriptional regulator [Xylella fastidiosa subsp. fastidiosa GB514] Length = 124 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 5/111 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFFD 75 +R+R R + ++QE L LG+T V ++E + L ++ + Sbjct: 6 ERVREARNLCSLTQEALASDLGVTRSAVAQWEMEQGTKPSVENLIALARRTGMAFEYLST 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ---LNRYFIQIDDVKVRQKIIELV 123 + Q L F ++ + R ++EL+ Sbjct: 66 GRGKPDCGKPISSISEPTPTYQKFDSQQKLLLEQFAKLT-PRQRSGLLELL 115 >gi|307127275|ref|YP_003879306.1| helix-turn-helix domain-containing protein [Streptococcus pneumoniae 670-6B] gi|295980949|emb|CBJ57197.1| putative transcriptional regulator [Streptococcus pneumoniae] gi|306484337|gb|ADM91206.1| helix-turn-helix domain protein [Streptococcus pneumoniae 670-6B] Length = 158 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|294498728|ref|YP_003562428.1| transcriptional regulator [Bacillus megaterium QM B1551] gi|294348665|gb|ADE68994.1| transcriptional regulator [Bacillus megaterium QM B1551] Length = 282 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 1/86 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R + G++Q++L + T Q+ K E G + L IS+ L +++FFD Sbjct: 1 MRDLRKMAGLTQQELSRDI-CTQAQISKIENGEEYPSSITLYKISKRLGVDVNYFFDSVE 59 Query: 79 TVCSDISSEENNVMDFISTPDGLQLN 104 + D +++ Sbjct: 60 SPRLDYVDAVQSLIRQYIRQRDYDAI 85 >gi|291485886|dbj|BAI86961.1| hypothetical protein BSNT_05082 [Bacillus subtilis subsp. natto BEST195] Length = 132 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/125 (13%), Positives = 49/125 (39%), Gaps = 5/125 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G ++ R + ++ + +GI+ + + E ++ I++ S+ Sbjct: 4 KKIGHAVKRLRTEKKKTVDEAAKEIGISQSYLSRIENNTQVPSLKVIEKIADYFNVHKSY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN----RYFIQIDDVKVRQKIIELVRSIVS 128 F ++ S E+ + T D L+ +I + ++ Q +I+ ++ + Sbjct: 64 LFFDEESLDSFTDPEKKLLAQKSITVDDLKKLNIVHENGSKITEEEL-QIVIQHLKELRK 122 Query: 129 SEKKY 133 ++ Y Sbjct: 123 LKESY 127 >gi|269217074|ref|ZP_06160928.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] gi|269129211|gb|EEZ60296.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] Length = 112 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 33/102 (32%), Gaps = 4/102 (3%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF---FDV 76 + R G+SQ+ LGI + +E+G + A I+++ + + Sbjct: 6 KEARKHAGLSQDDAARALGIPSRTFGSWERGEREISAVDAMRIADIYGCSLDYLAGRISW 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRY-FIQIDDVKVRQ 117 D ++ L Y + + + R+ Sbjct: 66 EEERALARKKRVIGSFDALTDQAQKMLVDYCAVLLGNPDCRK 107 >gi|229492212|ref|ZP_04386020.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] gi|229320838|gb|EEN86651.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] Length = 292 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 40/113 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G IR R G+S +L L ++ + E G RV RL I +L Sbjct: 8 VLIGASIRQARRHSGLSLRELARRLDVSPATLSAVETGKTRVSVDRLAAIGGILGVRFDA 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + + + D + + R+ D + + E+V++ Sbjct: 68 LLPAAIVRPPEQPRWGGDDADPDAHFRPHEWRRFGPSSFDPVLAAALAEMVKT 120 >gi|256371092|ref|YP_003108916.1| XRE family transcriptional regulator [Acidimicrobium ferrooxidans DSM 10331] gi|256007676|gb|ACU53243.1| transcriptional regulator, XRE family [Acidimicrobium ferrooxidans DSM 10331] Length = 205 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 44/114 (38%), Gaps = 10/114 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R G+S + E G++ + + E+ L I++ + ++ F Sbjct: 8 IGERLRHAREQRGLSLAAVAERTGLSKGFLSRVERDGVSPSIDSLVAIADAVGLAVADVF 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 V+P +S + D + + R+ + ++ ++ + Sbjct: 68 AVAP---VVVSRSVDRFPDGLPGEGVRDTL-----LSPPDDRR--VTVLETVAA 111 >gi|229011075|ref|ZP_04168269.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048] gi|228750247|gb|EEM00079.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048] Length = 405 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E L SF Sbjct: 5 LGEKIKTLRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 63 Query: 75 DVSPTVCSDISSEENN 90 + +I + Sbjct: 64 EEDDVEIVEIIQQMEQ 79 >gi|225018471|ref|ZP_03707663.1| hypothetical protein CLOSTMETH_02418 [Clostridium methylpentosum DSM 5476] gi|224948780|gb|EEG29989.1| hypothetical protein CLOSTMETH_02418 [Clostridium methylpentosum DSM 5476] Length = 79 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI+ R LG++Q++LGE +G++ Q V E I++V E I F F Sbjct: 6 NRIKEFREKLGLTQKRLGELIGVSRQAVNAIETEKFEPSIWIAYDIAKVFECAIEDVFLF 65 Query: 75 DVSPTVCSDISS 86 + SP S Sbjct: 66 EDSPHKSRAEKS 77 >gi|170757051|ref|YP_001780215.1| DNA binding protein [Clostridium botulinum B1 str. Okra] gi|169122263|gb|ACA46099.1| DNA binding protein [Clostridium botulinum B1 str. Okra] Length = 70 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 26/63 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R M+Q++L + + ++ + + EKG I+ V + I + + Sbjct: 3 NRVKELRTASNMTQQQLADLVSVSSRTIISLEKGQYNPSIMLAYKIARVFNTTIEELYCL 62 Query: 77 SPT 79 Sbjct: 63 KEN 65 >gi|218895211|ref|YP_002443622.1| DNA-binding protein [Bacillus cereus G9842] gi|228898828|ref|ZP_04063111.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 4222] gi|228905871|ref|ZP_04069769.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 200] gi|228937377|ref|ZP_04100024.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228963175|ref|ZP_04124345.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|218540820|gb|ACK93214.1| DNA-binding protein [Bacillus cereus G9842] gi|228796560|gb|EEM43998.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|228822335|gb|EEM68316.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228853811|gb|EEM98570.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 200] gi|228860853|gb|EEN05230.1| Transcriptional regulator Xre [Bacillus thuringiensis IBL 4222] gi|326937867|gb|AEA13763.1| XRE family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 67 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RIR R + G +QE + LG++ + + E+G + +++ L I Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSIDELM 65 >gi|160934259|ref|ZP_02081646.1| hypothetical protein CLOLEP_03130 [Clostridium leptum DSM 753] gi|156866932|gb|EDO60304.1| hypothetical protein CLOLEP_03130 [Clostridium leptum DSM 753] Length = 162 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF- 73 + + + + R I SQE++ E +G++ Q V K+E G ++E+ + Sbjct: 11 ISRNLTVLRQIHKYSQEEVAEKIGVSRQAVAKWESGETAPDLINCDALAELYNVSVDDLI 70 Query: 74 -FDVSPTVCS 82 FD S Sbjct: 71 HFDQSKEKIE 80 >gi|152972029|ref|YP_001337175.1| helix-turn-helix motif-containing protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956878|gb|ABR78908.1| putative regulator, helix-turn-helix motif [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 200 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V V R++ R MS ++L I+ + + EK + L ++ L Sbjct: 16 DQVSRAVATRLKAYRKAKKMSLDELSRRASISKGMLVEMEKEAANPSIAILCKLAAALGV 75 Query: 69 PISFFFDVSPTVCSDISSEE 88 ++ +VS I E Sbjct: 76 SVADIVNVSSEPALHIIPAE 95 >gi|89068976|ref|ZP_01156358.1| Predicted transcriptional regulator [Oceanicola granulosus HTCC2516] gi|89045557|gb|EAR51621.1| Predicted transcriptional regulator [Oceanicola granulosus HTCC2516] Length = 439 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 28/71 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR RR+ G+ Q L + GI+ + E R+ L I+ VLE + Sbjct: 8 GSRIRARRLDRGLRQADLAQMAGISASYLNLIEHNRRRIAGRLLHEIARVLEIDPVVLSE 67 Query: 76 VSPTVCSDISS 86 + D Sbjct: 68 GAGGATVDSLR 78 >gi|84499416|ref|ZP_00997704.1| transcriptional regulator, putative [Oceanicola batsensis HTCC2597] gi|84392560|gb|EAQ04771.1| transcriptional regulator, putative [Oceanicola batsensis HTCC2597] Length = 442 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 30/76 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR RR ++ M Q L +GI+ + E R+G L I+ VL Sbjct: 7 IGSRIRERRTMVAMRQADLARKVGISASYLNLIEHNRRRIGGKLLLDIAAVLGVEPVHLS 66 Query: 75 DVSPTVCSDISSEENN 90 + + E + Sbjct: 67 EGAEAALVATLREASA 82 >gi|116621956|ref|YP_824112.1| molybdate metabolism transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225118|gb|ABJ83827.1| transcriptional regulator of molybdate metabolism, XRE family [Candidatus Solibacter usitatus Ellin6076] Length = 376 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 26/74 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G+ L + +G++ Q V E G H++ L+ + F + Sbjct: 9 NRLAEIRKSRGVGAADLAKRVGVSRQTVYAIEAGTYIPNTQVALHLARELQVAVEELFSL 68 Query: 77 SPTVCSDISSEENN 90 + ++ Sbjct: 69 TGEPSDGGERLASD 82 >gi|323483358|ref|ZP_08088747.1| hypothetical protein HMPREF9474_00496 [Clostridium symbiosum WAL-14163] gi|323691141|ref|ZP_08105421.1| hypothetical protein HMPREF9475_00282 [Clostridium symbiosum WAL-14673] gi|323403337|gb|EGA95646.1| hypothetical protein HMPREF9474_00496 [Clostridium symbiosum WAL-14163] gi|323504838|gb|EGB20620.1| hypothetical protein HMPREF9475_00282 [Clostridium symbiosum WAL-14673] Length = 120 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 45/118 (38%), Gaps = 13/118 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R + QE+L + +G + Q V + EK + L ++ + +S Sbjct: 16 KLKELRKRRNLIQEQLADEIGTSQQTVSRVEKDKLSMSIETLIRLTVYFNVSADYMLGIS 75 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 ++ + +L + + + + + ++ + V+ + ++K + Sbjct: 76 D------------LVQPEDSIKIHELVQLYRGL-NERDKELVYSQVKRMHELDRKKKN 120 >gi|310822956|ref|YP_003955314.1| hypothetical protein STAUR_5725 [Stigmatella aurantiaca DW4/3-1] gi|309396028|gb|ADO73487.1| conserved uncharacterized protein [Stigmatella aurantiaca DW4/3-1] Length = 520 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ NVG ++R R+ + Q + LG++ + EKG + L + Sbjct: 4 NALNANVGLKLRGLRLARNIKQTDAAKDLGVSPAYLNLIEKGKRVMPFPLLWKALRYFDQ 63 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 F D + + + + L ++ +Q + K+ V ++ + Sbjct: 64 DPEQFMSTLGEGRVDEALAKLLDEPLLKS---LDIDSESLQSLSAEP--KLAGTVAALFN 118 Query: 129 SEKKYRTIEEECMVE 143 K RT E + + Sbjct: 119 LYKNTRTQLENVLTQ 133 >gi|269968531|ref|ZP_06182537.1| hypothetical protein VMC_39670 [Vibrio alginolyticus 40B] gi|269826866|gb|EEZ81194.1| hypothetical protein VMC_39670 [Vibrio alginolyticus 40B] Length = 210 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 37/82 (45%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + ++ V RI+ R L +S + L + GI+ + + EKG S L +S L Sbjct: 25 ADFINQAVAARIKEHRKRLKLSLDALSKRAGISKGMLVEVEKGAANPSISTLCKLSAALG 84 Query: 68 SPISFFFDVSPTVCSDISSEEN 89 ++ +V+ +I +E+ Sbjct: 85 ISVADIVNVASNPTVNIIDKED 106 >gi|288942496|ref|YP_003444736.1| XRE family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288897868|gb|ADC63704.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] Length = 132 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 50/141 (35%), Gaps = 17/141 (12%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQ 60 + N KI + +G+R+R R +S L ++ ++ YE+G+ R+G Sbjct: 1 MHNIKITMDLTKRIGQRLRSARHEQKLSLADLSARTNSLSKSRISNYEQGIRRMGLEEAH 60 Query: 61 HISEVLE-SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +S L ++ + L+L +F + D + R+ + Sbjct: 61 ELSVALGTVTPTYLLCLDDRGPLSDRE--------------LELIDHFRR-TDERGRETL 105 Query: 120 IELVRSIVSSEKKYRTIEEEC 140 + L RS + E Sbjct: 106 LSLARSQPDHDPAEDAAPETL 126 >gi|271966453|ref|YP_003340649.1| hypothetical protein Sros_5123 [Streptosporangium roseum DSM 43021] gi|270509628|gb|ACZ87906.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021] Length = 198 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 6/115 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P V +R R G+S E+LG ++ + EK + L Sbjct: 1 MTE----PTAALRTVANNVRTARRRAGLSLEELGRRAQVSKGALVALEKAQGNPNLATLV 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 +++ L +S P I + + + + T R + Sbjct: 57 RLADTLGISVSDLMQGPPEGRVRIVA--ADTIAPLWTGKQGSEARLMLTTPPPSP 109 >gi|227549953|ref|ZP_03980002.1| XRE family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227077969|gb|EEI15932.1| XRE family transcriptional regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 436 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR R ++Q + + LGI+ + + E + S L +S ++F Sbjct: 10 GGRIRTVRRDNDLTQMDMAQRLGISTSYLNQLENNQRPLTVSVLVELSRAFGLDPAYFSG 69 Query: 76 VSPTVC 81 Sbjct: 70 DDERRT 75 >gi|166367802|ref|YP_001660075.1| hypothetical protein MAE_50610 [Microcystis aeruginosa NIES-843] gi|166090175|dbj|BAG04883.1| hypothetical protein MAE_50610 [Microcystis aeruginosa NIES-843] Length = 73 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ--HISEVLESPI 70 + +G+R++ R G++Q KL E LG+T Q V +E G + Q + + L + Sbjct: 1 MELGQRMQKLRENAGLTQRKLAERLGVTVQTVSNWETGHREPRMNPSQTLKLCQSLNCSL 60 Query: 71 SFF 73 + Sbjct: 61 AQL 63 >gi|49082594|gb|AAT50697.1| PA2312 [synthetic construct] Length = 194 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 14/142 (9%) Query: 12 DINVGKRIRL----RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 D +G+R+ R +S + L G++ + + E G + L I++ L+ Sbjct: 6 DDLIGQRVAHNLPRLRGKRNLSLDALARISGVSRAMLAQIESGRSVPSIKVLCKIAQGLK 65 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI--IEL-VR 124 ++ F D + ++ + + DG +R + V +++ EL +R Sbjct: 66 VSVAAFLD--DRAFAGVAVLPAQQSKRLVSADGAFTSRA---LFPFDVARQVEFYELRLR 120 Query: 125 SIVSSEKKYRTI--EEECMVEQ 144 + + + +E +V Q Sbjct: 121 GLGQEDAEAHAPGTQENLVVTQ 142 >gi|46907623|ref|YP_014012.1| hypothetical protein LMOf2365_1414 [Listeria monocytogenes serotype 4b str. F2365] gi|226223996|ref|YP_002758103.1| hypothetical protein Lm4b_01404 [Listeria monocytogenes Clip81459] gi|254824545|ref|ZP_05229546.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|254852558|ref|ZP_05241906.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254991975|ref|ZP_05274165.1| hypothetical protein LmonocytoFSL_01894 [Listeria monocytogenes FSL J2-064] gi|255520427|ref|ZP_05387664.1| hypothetical protein LmonocFSL_04209 [Listeria monocytogenes FSL J1-175] gi|300765749|ref|ZP_07075725.1| hypothetical protein LMHG_11865 [Listeria monocytogenes FSL N1-017] gi|46880891|gb|AAT04189.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b str. F2365] gi|225876458|emb|CAS05167.1| Hypothetical protein of unknown function [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605870|gb|EEW18478.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|293593784|gb|EFG01545.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|300513524|gb|EFK40595.1| hypothetical protein LMHG_11865 [Listeria monocytogenes FSL N1-017] Length = 309 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 6/116 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G +++ R G+S + L + I + + E+G V + +E + Sbjct: 3 ELGDKLKQARREKGLSLDDLQQVTKIQKRYLVAIEEGNYAVMPGKFYARAFIKQYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + FD + + +E + + R + +++ Sbjct: 63 LDSATLFDEFESEVPETPQQEVVNNEPTRVQSKRNPMPAQSVGNQANTRNRFFDIL 118 >gi|152966951|ref|YP_001362735.1| XRE family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151361468|gb|ABS04471.1| transcriptional regulator, XRE family [Kineococcus radiotolerans SRS30216] Length = 164 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 3/83 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISE 64 + + +G R+R R G+S + E ++ V YE+G V RL +++ Sbjct: 1 MASDYSRALGSRLRAIRTQQGLSLHGVEEKSEGRWKAVVVGSYERGDRAVTVQRLAELAD 60 Query: 65 VLESPISFFF-DVSPTVCSDISS 86 P+S + +P ++ Sbjct: 61 FYGVPVSALLPEGAPQGSTEPPP 83 >gi|333022876|ref|ZP_08450940.1| putative regulatory protein [Streptomyces sp. Tu6071] gi|332742728|gb|EGJ73169.1| putative regulatory protein [Streptomyces sp. Tu6071] Length = 184 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 27/73 (36%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R GM+ L GI+ + + E G+ R L ++ + Sbjct: 2 GERLRGLRKERGMTLAALSTSTGISVSTLSRLESGLRRPTLELLLPLARAHRVALDELVG 61 Query: 76 VSPTVCSDISSEE 88 P + +E Sbjct: 62 TRPVADPRVRAEP 74 >gi|332297377|ref|YP_004439299.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332180480|gb|AEE16168.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 195 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 NK++P G+++R R G + + + + G++ V + E+ L Sbjct: 4 TQNKRVP----YRFGEKLRAVRERKGYTLKVVAQRAGVSESLVSQIERNKVSPAIDTLLM 59 Query: 62 ISEVLESPISFFFDV 76 +++VL+ + F F+ Sbjct: 60 LADVLDINLEFLFEE 74 >gi|323483037|ref|ZP_08088431.1| hypothetical protein HMPREF9474_00180 [Clostridium symbiosum WAL-14163] gi|323403666|gb|EGA95970.1| hypothetical protein HMPREF9474_00180 [Clostridium symbiosum WAL-14163] Length = 129 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 31/77 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R GM+Q +L E +G+T + V K+E+ ++ + L ++ + + + Sbjct: 3 IAEYRKEKGMTQLELAEKMGVTDKAVSKWERDLSYPDVNSLPKLAGIFGISVDQLMQIKT 62 Query: 79 TVCSDISSEENNVMDFI 95 N + I Sbjct: 63 NDGPVNDRPVANRIIPI 79 >gi|319936780|ref|ZP_08011192.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1] gi|319808048|gb|EFW04620.1| XRE family Transcriptional regulator [Coprobacillus sp. 29_1] Length = 191 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I R ++Q++L +GI+ + + K+E+G+ S L+ +SE+ + I Sbjct: 6 VGDLIYRLRKEKQLTQKELANQIGISDKTISKWERGLGCPDVSLLKDLSEIFQINIEKIL 65 Query: 75 DV 76 D Sbjct: 66 DG 67 >gi|319788682|ref|YP_004148157.1| XRE family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317467194|gb|ADV28926.1| transcriptional regulator, XRE family [Pseudoxanthomonas suwonensis 11-1] Length = 65 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 21/56 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G SQ +L E L ++ Q V E G I+ + I F Sbjct: 5 LRALRDEHGWSQGELAERLEVSRQTVNALETGKYDPSLPLAFRIARLFGRSIEDVF 60 >gi|319789030|ref|YP_004150663.1| transcriptional regulator, XRE family [Thermovibrio ammonificans HB-1] gi|317113532|gb|ADU96022.1| transcriptional regulator, XRE family [Thermovibrio ammonificans HB-1] Length = 222 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 34/76 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++V +R+R R LG+SQ K+ + LG++ + Q+YE+ + L+ I + Sbjct: 1 MSVNERLRKLREHLGLSQSKMAKELGVSLKTYQRYEQVGYDIPERALRQIEATFNVNPEW 60 Query: 73 FFDVSPTVCSDISSEE 88 + + + Sbjct: 61 LRQGKGEMFRPKTEAQ 76 >gi|310659792|ref|YP_003937513.1| hypothetical protein CLOST_2493 [Clostridium sticklandii DSM 519] gi|308826570|emb|CBH22608.1| protein of unknown function [Clostridium sticklandii] Length = 234 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 16 GKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+ I+ R + M+QE+L E LG++ Q V K+E V ++ I ++ + Sbjct: 4 GQNIQFLRKMRNKMTQEELAEKLGVSRQTVSKWELDVMYPEMDKVIEICKLFSCSMDELI 63 Query: 75 DVSPTVCSDISSEENN 90 V + S+ Sbjct: 64 RNDMNVSDEAYSDIRM 79 >gi|307545411|ref|YP_003897890.1| transcriptional regulator [Halomonas elongata DSM 2581] gi|307217435|emb|CBV42705.1| probable transcriptional regulator [Halomonas elongata DSM 2581] Length = 196 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 1/99 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R LG++ E L E G++ + K E+G+N + +++ L + F Sbjct: 21 RLKLLRKKLGVTLEALAEGTGLSKSYLSKVERGLNNPSIAAALKLAKALNVQVEELFSDE 80 Query: 78 PTVCSDISSEENNVMDFI-STPDGLQLNRYFIQIDDVKV 115 P S + DGL ++ + ++ Sbjct: 81 PGTQQSYSIVRAEQRGTLTHDNDGLSYASLARRVSEHQL 119 >gi|228949735|ref|ZP_04111960.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809949|gb|EEM56345.1| Transcriptional regulator, XRE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 142 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 31/84 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++Q++L E +G++ + + YE L +++ + Sbjct: 1 MIGVRIKSLRKKENLTQKQLAEKIGVSQRMIGYYESEERFPPHDVLTKLADCFSISADYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 + T + + D Sbjct: 61 LGRAVTDETKKQLTPKDEKDIAKR 84 >gi|225017776|ref|ZP_03706968.1| hypothetical protein CLOSTMETH_01705 [Clostridium methylpentosum DSM 5476] gi|224949427|gb|EEG30636.1| hypothetical protein CLOSTMETH_01705 [Clostridium methylpentosum DSM 5476] Length = 106 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 10/115 (8%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R + R ++Q ++ E LGIT E G + L ++ + + PI FD Sbjct: 2 RFKELRNKRDLTQLEVAEYLGITRAAYTNIENGKREADYNTLTMLARLYKVPIGDLFDFD 61 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + QL D K + K + ++ +K Sbjct: 62 TNTVEQKKDITKD----------AQLILKLYDSLDEKSKAKAEGFLAALADQDKS 106 >gi|170017663|ref|YP_001728582.1| transcriptional regulator [Leuconostoc citreum KM20] gi|169804520|gb|ACA83138.1| Predicted transcriptional regulator [Leuconostoc citreum KM20] Length = 76 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 22/66 (33%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R M+Q L E L +T Q + EKG I+ I F Sbjct: 4 RIQELRKARQMTQADLAEALAVTRQTIISLEKGKYNASLFLAYDIAHFFGLSIEEVFIFE 63 Query: 78 PTVCSD 83 D Sbjct: 64 NGETDD 69 >gi|167571834|ref|ZP_02364708.1| DNA-binding protein [Burkholderia oklahomensis C6786] Length = 200 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 30/89 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 23 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 82 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 + +++ QL Sbjct: 83 AQPKAPETIRVDGPHDIPTLAGHDAQYQL 111 >gi|153811409|ref|ZP_01964077.1| hypothetical protein RUMOBE_01801 [Ruminococcus obeum ATCC 29174] gi|149832536|gb|EDM87620.1| hypothetical protein RUMOBE_01801 [Ruminococcus obeum ATCC 29174] Length = 121 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 43/115 (37%), Gaps = 1/115 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + G+ I+ R G+S+ +L + L I + + E L Sbjct: 1 MIMKQSKEKFDFKAFGQAIKAARKAKGISRNQLADKLNIAPRYIASIENSGQHPSLQILY 60 Query: 61 HISEVLESPIS-FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + +L+ + FFF S + + +++ +S D L+ I++ Sbjct: 61 ELVTLLDVSVDQFFFPEREQEKSTRRRQLDTMLNGMSEKDLKILSATAKGIEEAN 115 >gi|22538127|ref|NP_688978.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|22535034|gb|AAN00851.1|AE014281_20 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] Length = 204 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R G+SQ +L L I Q + YEK + L I+E + + F Sbjct: 9 GPNLTRLRKERGISQVELSNQLQIGKQSISDYEKQKAFPTFANLDKIAEYFRATPTQLFG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + + S E + + L+ + F ++ + Sbjct: 69 TIKEIELENSVLETDTYTSKAD-HILKSVKEFYELTN 104 >gi|218892158|ref|YP_002441025.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254234978|ref|ZP_04928301.1| hypothetical protein PACG_00856 [Pseudomonas aeruginosa C3719] gi|126166909|gb|EAZ52420.1| hypothetical protein PACG_00856 [Pseudomonas aeruginosa C3719] gi|218772384|emb|CAW28166.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 183 Score = 44.0 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 2/89 (2%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D + +R+ R ++ +L E ++ + + E+ + AS L ++ L Sbjct: 2 DIDELIARRLAALRKERELTLAQLAERCAVSKAMISRIERNQSSPTASVLGRLAGGLGVA 61 Query: 70 ISFFFDVS--PTVCSDISSEENNVMDFIS 96 +S + P +++ D +S Sbjct: 62 LSELLGDAQVPAEPLCRRAQQEVWEDPVS 90 >gi|329888684|ref|ZP_08267282.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328847240|gb|EGF96802.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 65 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R SQ L + LG++ Q V E G I+ + + PI F Sbjct: 3 NRLKVLRAERDWSQAHLADELGVSRQTVNALETGRYDPSLPLAFKIARLFQMPIESIFID 62 Query: 77 SP 78 Sbjct: 63 EE 64 >gi|299533429|ref|ZP_07046811.1| anaerobic benzoate catabolism transcriptional regulator [Comamonas testosteroni S44] gi|298718635|gb|EFI59610.1| anaerobic benzoate catabolism transcriptional regulator [Comamonas testosteroni S44] Length = 295 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G++ +P+ +G+R+R R G+++ L ++ + + E G V LQ I Sbjct: 9 GDEAGKSPLLQALGERVRNLRARRGLTRRGLASAAVVSERHLANLEYGTGNVSILVLQQI 68 Query: 63 SEVLESPISFFFDV 76 + L+ ++ Sbjct: 69 AHALQCSMAELLGD 82 >gi|291537211|emb|CBL10323.1| Helix-turn-helix [Roseburia intestinalis M50/1] Length = 122 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/114 (13%), Positives = 41/114 (35%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 R LG + + GIT ++ G + +L+ I+ L++ + + Sbjct: 7 ELRDSLGYRDSDVAKGTGITKSTFSDWKNGRSIPKDEKLKKIALFLDTSVDYLRYGDQAP 66 Query: 81 CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 ++ E + I L++ + + + + ++ ++ E+K Sbjct: 67 QYYLNDETAKMAQEIFDNKELRMLFDAARDAAPEDLEAVHTMILALKRKERKNI 120 >gi|282866082|ref|ZP_06275130.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559121|gb|EFB64675.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 206 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 25/72 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V R+R R G++ E ++ + + E G + L ++ + + +S Sbjct: 18 VAPRLRDLRRNRGLTLETAARRAELSPAHLSRLETGRRQPSLPMLLGLARIYGTTVSELL 77 Query: 75 DVSPTVCSDISS 86 P I Sbjct: 78 GEMPPERDAIVR 89 >gi|241518443|ref|YP_002979071.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862856|gb|ACS60520.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 90 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 31/77 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V +G +R R+ G+SQE+L I V + E+G+ V + L+ + VL Sbjct: 2 DVRQTIGWNLRRLRVAKGLSQERLALEAEIDRSYVGRVERGMENVTVATLEAFARVLSVN 61 Query: 70 ISFFFDVSPTVCSDISS 86 +S F Sbjct: 62 VSALFAEIDPRAPKPKP 78 >gi|268590867|ref|ZP_06125088.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] gi|291313652|gb|EFE54105.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] Length = 103 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 5/97 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRL 59 M NK + VG R++ R G + +L + G+ QQ+ +YEKGVNR+G L Sbjct: 1 MSDNK----SISKLVGFRLKQLRNESGFTAFQLTKEAGLKSEQQLYRYEKGVNRIGIDEL 56 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFIS 96 + VL + I FF + +E + Sbjct: 57 VAVLNVLNARIGDFFVQLENEMAVSEAEFCYRESPEA 93 >gi|148544879|ref|YP_001272249.1| ABC transporter related [Lactobacillus reuteri DSM 20016] gi|184154216|ref|YP_001842557.1| ABC transporter ATP-binding component [Lactobacillus reuteri JCM 1112] gi|227364019|ref|ZP_03848119.1| ABC superfamily ATP binding cassette transporter ATPase [Lactobacillus reuteri MM2-3] gi|325683224|ref|ZP_08162740.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus reuteri MM4-1A] gi|148531913|gb|ABQ83912.1| ABC transporter related [Lactobacillus reuteri DSM 20016] gi|183225560|dbj|BAG26077.1| ABC transporter ATP-binding component [Lactobacillus reuteri JCM 1112] gi|227070941|gb|EEI09264.1| ABC superfamily ATP binding cassette transporter ATPase [Lactobacillus reuteri MM2-3] gi|324977574|gb|EGC14525.1| ABC superfamily ATP binding cassette transporter ABC protein [Lactobacillus reuteri MM4-1A] Length = 293 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R +SQ +L L ++ Q V K+E G +L +++V + Sbjct: 7 HQLLKLRTEKQLSQAELATRLFVSRQAVSKWENGDAEPSIDKLILLAKVFNVSLDRLILG 66 Query: 77 SPTVCSDISSEENNVMDFIS 96 + + N V F S Sbjct: 67 TNDFNQPLVKLNNIVKTFNS 86 >gi|65321317|ref|ZP_00394276.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] Length = 106 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 4/88 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G+ ++ R ++Q + G+ + ++ Q+ E N L I+ + Sbjct: 5 GENLKKFRNSRALTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFNISVDTLMG 64 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPD 99 F S D+ E V + Sbjct: 65 RKFTTSEKHLEDVLDEIQTVFAGLDESQ 92 >gi|328886446|emb|CCA59685.1| DNA-binding protein [Streptomyces venezuelae ATCC 10712] Length = 283 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 48/137 (35%), Gaps = 2/137 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + P +G +R R GMS ++ LG+ ++ E G + A R++ Sbjct: 1 MPPRSSPTARQQRLGSELRKLREQSGMSAQQAAALLGVDRTRIPHIESGRFGISAERVRT 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ P + D+ + + + P + + + + Sbjct: 61 LAFNYGCPDTGLVDLLAAMAHERDRGWWEEHRGLLPPALIDIAELEYHAS--ALHTAVTT 118 Query: 122 LVRSIVSSEKKYRTIEE 138 + ++ +E+ R + + Sbjct: 119 HIPGLLQTEEHARAVFD 135 >gi|328947690|ref|YP_004365027.1| hypothetical protein Tresu_0801 [Treponema succinifaciens DSM 2489] gi|328448014|gb|AEB13730.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 109 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 29/68 (42%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +G+ ++ R ++Q +L E ++ + V+ E L I++ L Sbjct: 2 TSDDIQKRLGENVKRIRKEQNLTQFQLAEKAELSEETVKNIELSRCWTSDKNLAKITKAL 61 Query: 67 ESPISFFF 74 ISF F Sbjct: 62 GVDISFLF 69 >gi|328947407|ref|YP_004364744.1| hypothetical protein Tresu_0498 [Treponema succinifaciens DSM 2489] gi|328447731|gb|AEB13447.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 195 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 13/113 (11%), Positives = 37/113 (32%), Gaps = 9/113 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++ N G+++R R ++ + + ++ V + E+ L Sbjct: 1 MSEDE---NKRQYQFGEKLRAVRERKHLTLKAVAAHAKVSESLVSQIERNKVSPAIDTLL 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 I++ L+ + F F+ + + + + ++ D Sbjct: 58 DIADALDISLEFLFEEYSRRRPVSVIHRED------RRKINEEDVVYEELSDP 104 >gi|239835028|ref|ZP_04683356.1| Protein schB [Ochrobactrum intermedium LMG 3301] gi|239823091|gb|EEQ94660.1| Protein schB [Ochrobactrum intermedium LMG 3301] Length = 205 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 8 PNPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P P D ++G RIR RR LG++ L E G++ + + E+G+ L I++VL Sbjct: 18 PTPNDAGDIGARIRTRRQALGLTLGYLSEVSGLSTGALSQIERGLVSPTVRTLYTIADVL 77 Query: 67 ESPISFFFD 75 + D Sbjct: 78 SMSPAQLID 86 >gi|225859710|ref|YP_002741220.1| transcriptional activator [Streptococcus pneumoniae 70585] gi|225721236|gb|ACO17090.1| transcriptional activator [Streptococcus pneumoniae 70585] Length = 287 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + S++S+ + + + L + Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYDDLEYIYR 96 >gi|254440801|ref|ZP_05054294.1| Helix-turn-helix domain protein [Octadecabacter antarcticus 307] gi|198250879|gb|EDY75194.1| Helix-turn-helix domain protein [Octadecabacter antarcticus 307] Length = 130 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 47/118 (39%), Gaps = 4/118 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + G R+ R G+ + L E LG+ + ++ +E+ + A+R+Q ++ +L Sbjct: 13 NEANATFGDRLAAARQAKGLDVDGLSEKLGVDVRTIKVWERDADMPHANRIQMLAGLLNV 72 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + S+++ + + D L V +K+ +L + Sbjct: 73 SMVWLVSGESNGSSEVA---DTFERPVGVNDALGEITQLKATLSAAV-EKLDKLQERL 126 >gi|160894239|ref|ZP_02075016.1| hypothetical protein CLOL250_01792 [Clostridium sp. L2-50] gi|156863940|gb|EDO57371.1| hypothetical protein CLOL250_01792 [Clostridium sp. L2-50] Length = 120 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 15/118 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK IR R+ + QE L E +T + E+G I L Sbjct: 15 IGKNIRKFRLAKKLRQEDLAEKTDLTTNYIGMVERGEKIPSLETFIKILNALGVSSDMVL 74 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + LN ++ + R +I E++ ++V K+ Sbjct: 75 TDVLETGYTVKNS--------------MLNEKLEKLA-PEDRNRIYEVIDTLVKQSKQ 117 >gi|153949547|ref|YP_001402678.1| DNA binding protein [Yersinia pseudotuberculosis IP 31758] gi|152961042|gb|ABS48503.1| DNA binding protein [Yersinia pseudotuberculosis IP 31758] Length = 118 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 5/110 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R +SQEKLG GI +V +YEKG + ++ + +L P + Sbjct: 4 ERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVPECY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 F+ V + + + + + ++ D ++++ I+EL Sbjct: 64 FYIVDDVFAAAVLQMYHTHQVPFLQHPDYEKLKQAEKLVD-QLQKLIVEL 112 >gi|153952717|ref|YP_001393482.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219853388|ref|YP_002470510.1| hypothetical protein CKR_0045 [Clostridium kluyveri NBRC 12016] gi|146345598|gb|EDK32134.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219567112|dbj|BAH05096.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 65 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 20/51 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 I+ R M+QE+L E +T Q + E G I+++ Sbjct: 5 IKDLRKKKRMTQEELSELCKVTRQTIISLESGKYNPSIFLAYKIAKIFGLS 55 >gi|90580427|ref|ZP_01236233.1| Hypothetical transcriptional regulator [Vibrio angustum S14] gi|90438336|gb|EAS63521.1| Hypothetical transcriptional regulator [Vibrio angustum S14] Length = 104 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R GM+Q + L I Q E G + L +S++ I FF Sbjct: 9 HRLKQAREEHGMTQVDAAKHLKIARQTYLDLENGRTQPRLDTLLELSKMFNKSIMFFAGE 68 Query: 77 SPTVCS 82 P++ Sbjct: 69 RPSLDE 74 >gi|46581469|ref|YP_012277.1| DNA-binding protein [Desulfovibrio vulgaris str. Hildenborough] gi|120601361|ref|YP_965761.1| cupin 2 domain-containing protein [Desulfovibrio vulgaris DP4] gi|46450891|gb|AAS97537.1| DNA-binding protein [Desulfovibrio vulgaris str. Hildenborough] gi|120561590|gb|ABM27334.1| transcriptional regulator, MerR family [Desulfovibrio vulgaris DP4] gi|311235121|gb|ADP87975.1| Cupin 2 conserved barrel domain protein [Desulfovibrio vulgaris RCH1] Length = 189 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 34/84 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R GMS+E+L E G+T + + E+ LQ ++ L + F Sbjct: 6 LGARVRKYREDRGMSREQLSEAAGLTVEFIAALEEDNLYPSIGPLQKVARALNVRLGTFM 65 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 D T ++ + D Sbjct: 66 DDEVTKDPIVARRGDREADLTMQK 89 >gi|25011386|ref|NP_735781.1| hypothetical protein gbs1344 [Streptococcus agalactiae NEM316] gi|24412924|emb|CAD47003.1| unknown [Streptococcus agalactiae NEM316] Length = 158 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 1 MIGDNIKSLRRTHDLTQPEFAKIIGISRNSLSRYENGTSSVSTELIDRICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + ++ + L+R + Sbjct: 61 VGEDKMMTPVEDYQLTIKIEVLKERGSAILSRLYR 95 >gi|313900623|ref|ZP_07834116.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312954685|gb|EFR36360.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 367 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 7/104 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK++ R M+QE+L +G++ V K+E L ++ + + Sbjct: 4 IRLGKKLIALRRDANMTQEELAAYMGVSKSSVSKWETETTLPDILLLPQLATLFNVSVDE 63 Query: 73 FFDVSPTVCSDI-------SSEENNVMDFISTPDGLQLNRYFIQ 109 P + + S E + + +L R + Sbjct: 64 LIGYEPQLSMEAVNKLYLQLSAEWSRDSANAYAHSEELIRKYYS 107 >gi|257067792|ref|YP_003154047.1| putative transcriptional regulator [Brachybacterium faecium DSM 4810] gi|256558610|gb|ACU84457.1| predicted transcriptional regulator [Brachybacterium faecium DSM 4810] Length = 190 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 28/73 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RIR R L +S L E ++ + + + E G + L I+ L + + Sbjct: 12 QLGERIRAARQELELSVGALAERSDVSRRMLTQIELGQANPSVAILDRIAAGLGTTFAAL 71 Query: 74 FDVSPTVCSDISS 86 V D Sbjct: 72 MGVGADAPPDGVE 84 >gi|254518453|ref|ZP_05130509.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] gi|226912202|gb|EEH97403.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] Length = 115 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 46/112 (41%), Gaps = 7/112 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R+R R+ M+QE + G+ ++ +YE + + ++E + + Sbjct: 5 GERLRSLRLEKDMTQEDVASYFGLHKTRISQYELNKRQADDDMKKKLAEFFGVSLDYLM- 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK--IIELVRS 125 +DI + +++ L + + ++ D ++ IE V++ Sbjct: 64 ----GNTDIRESADEILNKKEPTIALHSDYEYDELPDEAKKEIENFIEYVKA 111 >gi|239630947|ref|ZP_04673978.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065269|ref|YP_003787292.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|239527230|gb|EEQ66231.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437676|gb|ADK17442.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] Length = 202 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 27/73 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++ RM M+Q L E L ++ V +E N + I+ + E + Sbjct: 5 KQLHQIRMAHQMTQANLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDTLILD 64 Query: 77 SPTVCSDISSEEN 89 P + + + Sbjct: 65 DPKLNEKLIHDSK 77 >gi|221197606|ref|ZP_03570653.1| DNA-binding/cupin domain protein [Burkholderia multivorans CGD2M] gi|221204279|ref|ZP_03577297.1| DNA-binding/cupin domain protein [Burkholderia multivorans CGD2] gi|221176445|gb|EEE08874.1| DNA-binding/cupin domain protein [Burkholderia multivorans CGD2] gi|221184160|gb|EEE16560.1| DNA-binding/cupin domain protein [Burkholderia multivorans CGD2M] Length = 203 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P I + + + ++ DG R + ID Sbjct: 86 S-QPKAPETIRVDGPHDIPTLAGHDGQYQLRVWGPID 121 >gi|213019727|ref|ZP_03335532.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994768|gb|EEB55411.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 303 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 53/138 (38%), Gaps = 12/138 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + + +G++I R++ +Q +L +G+ +++V YE G + L Sbjct: 1 MFVSVRDISSISYKIGQKIEDCRLMQRCTQAELASKIGLAYKEVTNYENGYIPITIEVLY 60 Query: 61 HISEVLESPISFFF---------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 I+ VL + + ++ N P ++ +I+ Sbjct: 61 VIARVLSVNVVDLLPKPITVREYEDEDEEILYLTKIYENQKLGKIVPSLIRFVHISEKIN 120 Query: 112 DVKVRQKIIELVRSIVSS 129 + R +E+ +++V Sbjct: 121 QEEAR---LEVAKNLVKE 135 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 38/83 (45%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + +G+RIR R+I +Q+ L + +G+T +++ +YE+G + +L Sbjct: 156 TEKEVCTDSIYYRIGQRIREWRLIRRYTQKDLADKVGLTLKEIHEYERGYTAITFDKLYE 215 Query: 62 ISEVLESPISFFFDVSPTVCSDI 84 ++ L I + + Sbjct: 216 MAGALSVNIKVLLPETRESKEEN 238 >gi|197123735|ref|YP_002135686.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|196173584|gb|ACG74557.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] Length = 217 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 33/94 (35%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G ++ R +G +QE L + +Q+ E G A L ++ L + Sbjct: 1 MNAIIGTNVKTLREAMGWTQEDLAAKSKKPVRTIQRVESGEVLPTADTLITLAVALGVEV 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + +V F D ++L Sbjct: 61 EDLRRTPDEWAHILEQAAGHVKKFHEEYDIIELA 94 >gi|116331369|ref|YP_801087.1| transcriptional regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125058|gb|ABJ76329.1| Transcriptional regulator, HTH domain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 114 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++R R+ + ++Q ++ E LG + K E G R+ + E+ P +F+ Sbjct: 52 NQLRAARIEVNLTQAQVSERLGKYQSYISKVESGKKRLFIEDFIRLCELYNKPPEYFYS 110 >gi|332686955|ref|YP_004456729.1| SOS-response repressor and protease LexA [Melissococcus plutonius ATCC 35311] gi|332370964|dbj|BAK21920.1| SOS-response repressor and protease LexA [Melissococcus plutonius ATCC 35311] Length = 236 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 + +G+RI+ RR L +S + + E LG++ + +YEKG + + L++I+ +L + + Sbjct: 1 MTIGERIKARRKELKLSADIVAEKLGVSRSTIFRYEKGDIEKLPTNILENIAIILHTSPA 60 Query: 72 FFFDVSPTVCS 82 + + Sbjct: 61 YLMGWEENGPN 71 >gi|325261695|ref|ZP_08128433.1| HTH DNA-binding protein [Clostridium sp. D5] gi|324033149|gb|EGB94426.1| HTH DNA-binding protein [Clostridium sp. D5] Length = 71 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R ++Q +L + + +T Q + E G I++ I F Sbjct: 3 NKIQQLRKERRITQSELADAVEVTRQTIISLENGRYNASLILAHKIAQYFGVNIEDIF 60 >gi|325961603|ref|YP_004239509.1| transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323467690|gb|ADX71375.1| putative transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] Length = 201 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 34/99 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R G + ++L E G++ + V E+G L IS+ L + Sbjct: 11 AIGSRVRQERQSRGWTLDQLAEAAGVSRRMVVNVEQGAANPSVGTLLRISDALGIGLPAL 70 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 D + + + S G + D Sbjct: 71 VDAPRPRPVTVVRSGDGAALWSSARGGRGVLVAGTASPD 109 >gi|298240985|ref|ZP_06964792.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297554039|gb|EFH87903.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 1237 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 1/95 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D G+R+ R +G++QE L LGIT + + ++E G A+ LQ + Sbjct: 9 LDYVFGQRMLALRTSIGLTQEGLAAALGITRKTIGRWEAGEMYPKAAHLQALLAFA-LQQ 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F + +L R Sbjct: 68 GAFAAGQEEEEIRAFWSAARQKVLLDETWLHELLR 102 >gi|296161350|ref|ZP_06844157.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295888336|gb|EFG68147.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 124 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 12/109 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R L MSQ +L G+ YEKG+ S L I+E + + Sbjct: 7 RLKQERRRLRMSQAELASAGGVQKHAQLNYEKGLRSPDTSYLVGIAE-AGVDVLYLLTGR 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + ++ + + + + ++ ++ ++ LV ++ Sbjct: 66 TSDPATLALDPDE-----------ERLLAGYRELKLREKRGVLALVAAM 103 >gi|188579020|ref|YP_001915949.1| helix-turn-helix, putative [Xanthomonas oryzae pv. oryzae PXO99A] gi|188523472|gb|ACD61417.1| helix-turn-helix, putative [Xanthomonas oryzae pv. oryzae PXO99A] Length = 62 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 23/56 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R G SQ +LGE LG++ Q + E G I+ + I F Sbjct: 1 MRELREASGWSQGELGERLGVSRQTINALETGKYDPSLPLAFRIARLFGESIEHVF 56 >gi|170697860|ref|ZP_02888945.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171317970|ref|ZP_02907144.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|172064453|ref|YP_001812104.1| XRE family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|170137247|gb|EDT05490.1| transcriptional regulator, XRE family [Burkholderia ambifaria IOP40-10] gi|171096870|gb|EDT41744.1| transcriptional regulator, XRE family [Burkholderia ambifaria MEX-5] gi|171996970|gb|ACB67888.1| transcriptional regulator, XRE family [Burkholderia ambifaria MC40-6] Length = 180 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 30/79 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L + G+T + K E+G++ + +S+ L + F S Sbjct: 4 RLKLLRKQKGWTLDVLADETGLTKSYLSKVERGLSVPSIAVALKLSKALNIDVEQLFSES 63 Query: 78 PTVCSDISSEENNVMDFIS 96 + + Sbjct: 64 HNRELITVTRAGERTAMGA 82 >gi|111020517|ref|YP_703489.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110820047|gb|ABG95331.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 206 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 8/112 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R ++ + L GIT + K E+ + L I L P+ F Sbjct: 18 IGPRLKAARQAQRLTLDDLAASCGITKGYLSKIERDHASASVATLVRICAALNIPVGSLF 77 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + S + ++ + F L F + ++I L+ I Sbjct: 78 E-SSAAGEVVRADNYPPISFGGERMAEFLLTPFGE-------RRIQSLLSRI 121 >gi|15597508|ref|NP_251002.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116050256|ref|YP_790927.1| XRE family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218891714|ref|YP_002440581.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254240751|ref|ZP_04934073.1| hypothetical protein PA2G_01418 [Pseudomonas aeruginosa 2192] gi|9948345|gb|AAG05700.1|AE004657_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115585477|gb|ABJ11492.1| putative transcriptional regulator, XRE family [Pseudomonas aeruginosa UCBPP-PA14] gi|126194129|gb|EAZ58192.1| hypothetical protein PA2G_01418 [Pseudomonas aeruginosa 2192] gi|218771940|emb|CAW27719.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 193 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 14/142 (9%) Query: 12 DINVGKRIRL----RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 D +G+R+ R +S + L G++ + + E G + L I++ L+ Sbjct: 6 DDLIGQRVAHNLLRLRGKRNLSLDALARISGVSRAMLAQIESGRSVPSIKVLCKIAQGLK 65 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI--IEL-VR 124 ++ F D + ++ + + DG +R + V +++ EL +R Sbjct: 66 VSVAAFLD--DRAFAGVAVLPAQQSKRLVSADGAFTSRA---LFPFDVARQVEFYELRLR 120 Query: 125 SIVSSEKKYRTI--EEECMVEQ 144 + + + +E +V Q Sbjct: 121 GLGQEDAEAHAPGTQENLVVAQ 142 >gi|32141280|ref|NP_733681.1| UDP-N-acetylglucosamine transferase [Streptomyces coelicolor A3(2)] gi|256784482|ref|ZP_05522913.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24] gi|289768363|ref|ZP_06527741.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24] gi|24429550|emb|CAD55243.1| putative UDP-N-acetylglucosamine transferase [Streptomyces coelicolor A3(2)] gi|289698562|gb|EFD65991.1| UDP-N-acetylglucosamine transferase [Streptomyces lividans TK24] Length = 509 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 30/64 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G+ IR R G +Q +L E L + V + E+G + + I E L Sbjct: 1 MADDYLVRIGRLIRDARQHRGWTQSQLAEALNTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|323466835|gb|ADX70522.1| Putative uncharacterized protein [Lactobacillus helveticus H10] Length = 268 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 11/100 (11%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R++ G++QE++ + ++ + E+ N + ++L + ++ Sbjct: 1 MTIGQQLKKTRLLFGLTQEEMSAGI-VSKSFYSRVERDKNAITINKLIAMLNANNISLND 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 FF + + + + ++L++ + Sbjct: 60 FFRTFDNEGLPELKVQRKIYTAYNERNIVELHQIEKSLSS 99 >gi|317056800|ref|YP_004105267.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315449069|gb|ADU22633.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 296 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 44/132 (33%), Gaps = 8/132 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--D 75 ++R R +SQE L +G++ Q V K+E + +S + + + Sbjct: 6 KLRELRKQEKLSQEALAAKIGVSRQAVTKWETERGLPDIGNIMELSALFGVTVEELLAAE 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI-----DDVKVRQKII-ELVRSIVSS 129 + V + E D QI + K+ +++ + +I Sbjct: 66 ETIAVKHEPFYESRTEYDIAGNKRIDMQLGGAKQILLKGTAEEKLIVRLLSRSIETIRQD 125 Query: 130 EKKYRTIEEECM 141 K E + + Sbjct: 126 LKVRIEDERQRI 137 >gi|301382068|ref|ZP_07230486.1| RstR1 [Pseudomonas syringae pv. tomato Max13] gi|302058949|ref|ZP_07250490.1| RstR1 [Pseudomonas syringae pv. tomato K40] gi|302130444|ref|ZP_07256434.1| RstR1 [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 203 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/122 (15%), Positives = 44/122 (36%), Gaps = 4/122 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R ++Q++L + +GIT Q+ +YE G + L +++ L + Sbjct: 42 KLISLRSAQNLTQQQLADAVGITPSQISRYESGQAKPRKIILLRLADALGVSSTELLQSP 101 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 + + + + F +D ++R + + V E+ Sbjct: 102 VQRVVVGERRSIDPPSQLRER----MLKEFSSMDSEEIRTAKAQAAEAGVPFEQYVTDTG 157 Query: 138 EE 139 EE Sbjct: 158 EE 159 >gi|238922270|ref|YP_002935784.1| hypothetical protein EUBELI_20505 [Eubacterium eligens ATCC 27750] gi|238873942|gb|ACR73650.1| Hypothetical protein EUBELI_20505 [Eubacterium eligens ATCC 27750] Length = 115 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 35/82 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V RIR R ++Q +L LG+ + + YE+G + S L +S +L++ + + Sbjct: 3 EVHNRIRELREEKHITQIRLSTELGVAQETISAYEQGRHMPSVSTLIKLSSILDASMDYI 62 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 S T ++ + Sbjct: 63 MMKSDTRNIIEVQSLSDSETRL 84 >gi|229083930|ref|ZP_04216233.1| Transcriptional regulator [Bacillus cereus Rock3-44] gi|228699365|gb|EEL52047.1| Transcriptional regulator [Bacillus cereus Rock3-44] Length = 80 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R+ L ++Q++L E +G+T Q + EKG +I L ++ F Sbjct: 17 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLELCLNICYALNQTLNDLFWE 76 Query: 77 SPT 79 Sbjct: 77 EGP 79 >gi|255656204|ref|ZP_05401613.1| putative regulatory protein [Clostridium difficile QCD-23m63] gi|296450362|ref|ZP_06892119.1| probable regulatory protein [Clostridium difficile NAP08] gi|296878774|ref|ZP_06902775.1| probable regulatory protein [Clostridium difficile NAP07] gi|296260772|gb|EFH07610.1| probable regulatory protein [Clostridium difficile NAP08] gi|296430202|gb|EFH16048.1| probable regulatory protein [Clostridium difficile NAP07] Length = 105 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 11/91 (12%), Positives = 26/91 (28%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKR++ R ++ ++ +G++ + + E G +L Sbjct: 3 YIGKRLKEERKKANLTSKEFANMVGVSPWYITQIESGKKNPSLKTFIKFVSILNISADVL 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + N L L Sbjct: 63 IKDITSTGKTYLENDINEELKDLNSRELNLI 93 >gi|157145741|ref|YP_001453060.1| hypothetical protein CKO_01491 [Citrobacter koseri ATCC BAA-895] gi|157082946|gb|ABV12624.1| hypothetical protein CKO_01491 [Citrobacter koseri ATCC BAA-895] Length = 191 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ + RIR+ R G S +L E G++ + K E+G + A+ L +S Sbjct: 6 DSINQRISARIRIERESRGWSLTELAERAGVSRAMIHKIERGESSPTATLLGRLSGAFGI 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 +S + + + + L+ Sbjct: 66 SMSTLIARAEMQEGKLLRFADQPVWHDPQTHYLR 99 >gi|89897113|ref|YP_520600.1| hypothetical protein DSY4367 [Desulfitobacterium hafniense Y51] gi|89336561|dbj|BAE86156.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 75 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 K I R G++QE+L LG+TFQ V K+E + L +S++L+ I Sbjct: 3 KNICRYRKEKGLTQEELARKLGVTFQAVSKWETAQTLPDITLLPGLSQLLDISIDKLL 60 >gi|56962741|ref|YP_174467.1| DNA-binding protein [Bacillus clausii KSM-K16] gi|56908979|dbj|BAD63506.1| DNA-binding protein [Bacillus clausii KSM-K16] Length = 68 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R+++ R M+Q +L E +G+T Q + EKG I++ E P+ Sbjct: 1 MEIENRVKVLRAEKRMTQGELAEAVGVTRQTIVALEKGRYSPSLLLAFQIAKQFELPVED 60 Query: 73 FFDVSPTV 80 F ++ Sbjct: 61 VFFLTEEE 68 >gi|75760140|ref|ZP_00740200.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903528|ref|ZP_04067651.1| hypothetical protein bthur0014_46880 [Bacillus thuringiensis IBL 4222] gi|228910865|ref|ZP_04074674.1| hypothetical protein bthur0013_50070 [Bacillus thuringiensis IBL 200] gi|228968140|ref|ZP_04129144.1| hypothetical protein bthur0004_49240 [Bacillus thuringiensis serovar sotto str. T04001] gi|74492377|gb|EAO55533.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228791575|gb|EEM39173.1| hypothetical protein bthur0004_49240 [Bacillus thuringiensis serovar sotto str. T04001] gi|228848816|gb|EEM93661.1| hypothetical protein bthur0013_50070 [Bacillus thuringiensis IBL 200] gi|228856104|gb|EEN00641.1| hypothetical protein bthur0014_46880 [Bacillus thuringiensis IBL 4222] Length = 79 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ + Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVSVE 65 Query: 72 FFFDVSPTVCSDIS 85 F + D Sbjct: 66 EIFTLVEGEEDDEE 79 >gi|317490596|ref|ZP_07949069.1| cupin domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325831367|ref|ZP_08164621.1| cupin domain protein [Eggerthella sp. HGA1] gi|316910298|gb|EFV31934.1| cupin domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325486621|gb|EGC89069.1| cupin domain protein [Eggerthella sp. HGA1] Length = 183 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R +S+E + L + + ++E+ + V S + H++ + Sbjct: 7 EIGLRIKGLREACDVSREDMAAELEVPLETYARWEETGDDVPISAIYHMAHHFGVEFTEI 66 Query: 74 FDVSPTVCS 82 + Sbjct: 67 LTGTAAKLD 75 >gi|294141694|ref|YP_003557672.1| transcriptional regulator [Shewanella violacea DSS12] gi|293328163|dbj|BAJ02894.1| transcriptional regulator, putative [Shewanella violacea DSS12] Length = 509 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A L I+ V Sbjct: 13 FLGTKIRNLRKRNHLTMEDLSARCVRVDPETAPSVSYLSMIERGKRVPSAGMLAVIAAVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + + +F D P + + Sbjct: 73 QKEVDWFLDDVPEEQAIMPD 92 >gi|289648862|ref|ZP_06480205.1| hypothetical protein Psyrpa2_14100 [Pseudomonas syringae pv. aesculi str. 2250] gi|330870321|gb|EGH05030.1| hypothetical protein PSYAE_24328 [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 115 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 14/118 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS-EVLESPISFF 73 VG R+R R LG+SQ + G +G++ + YE G ++ E + Sbjct: 11 VGVRLREERERLGLSQTEFGTLVGVSRGTQKNYELGTALGALDLKYLMALEANGIDAGYV 70 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 I+SEE+ Q+ + I D R + ++++ + Sbjct: 71 LTAQRRYGRGITSEES------------QILAQYRSITDGDQR-ALRRFLKAMADDAE 115 >gi|258622468|ref|ZP_05717490.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|262164497|ref|ZP_06032235.1| predicted transcriptional regulator [Vibrio mimicus VM223] gi|258585168|gb|EEW09895.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|262026877|gb|EEY45544.1| predicted transcriptional regulator [Vibrio mimicus VM223] Length = 505 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRVGASRLQHISEVL 66 +G ++R R ++ E L + E+G L+ I+EV Sbjct: 13 FLGTKVRNLRKRNHLTMEDLSARCIRVSPEYAPSVSYLSMIERGKRVPSVEMLEVIAEVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + +F D P Sbjct: 73 QKDPIWFLDDEPEQVDITPE 92 >gi|258515442|ref|YP_003191664.1| hypothetical protein Dtox_2224 [Desulfotomaculum acetoxidans DSM 771] gi|257779147|gb|ACV63041.1| protein of unknown function DUF955 [Desulfotomaculum acetoxidans DSM 771] Length = 399 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 6/77 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K N G+R++ RM G + +L + I+ Q + YE G N+ + Sbjct: 1 MKKQKKFN------GERLKSARMYNGYTLTELSKITNISKQSLSLYENGNNKPEWDNISK 54 Query: 62 ISEVLESPISFFFDVSP 78 IS L P FF S Sbjct: 55 ISVALGFPRDFFLQESD 71 >gi|253582192|ref|ZP_04859415.1| transcription regulator [Fusobacterium varium ATCC 27725] gi|251835731|gb|EES64269.1| transcription regulator [Fusobacterium varium ATCC 27725] Length = 185 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 38/86 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVG I+ R+ G+ + + E I+ + + EKG + ++ I++ LE P+ Sbjct: 5 INVGAIIKRIRIEKGLLLKDVAEKCEISSSMLSQIEKGNANPSLNTIKSIAQALEIPLFK 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 FF I+ + I+T Sbjct: 65 FFIEPEKEDISINILKKEDRKIINTK 90 >gi|261368648|ref|ZP_05981531.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282569235|gb|EFB74770.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 232 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 32/80 (40%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R G++Q++ + LGI+ Q+ YEKG+ G + + +++ + S Sbjct: 12 LRKERGITQKQAAQDLGISQAQLSHYEKGIRECGLAFVVQVADYYGVSCDYLLGRSAERS 71 Query: 82 SDISSEENNVMDFISTPDGL 101 E+ +T + Sbjct: 72 GQTIRVEDLPDANAATSGSV 91 >gi|212710259|ref|ZP_03318387.1| hypothetical protein PROVALCAL_01318 [Providencia alcalifaciens DSM 30120] gi|212687066|gb|EEB46594.1| hypothetical protein PROVALCAL_01318 [Providencia alcalifaciens DSM 30120] Length = 125 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 38/82 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG IR R+ ++ E+LG L I+ QQ+ +YE+G+ V L I L S F Sbjct: 22 EVGSFIREARLNCSLTGEELGRMLHISQQQISRYERGITSVSIETLDAILNKLGKDWSDF 81 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 F SD +E +F+ Sbjct: 82 FFKVIANYSDEVAEIKLQDNFL 103 >gi|104781495|ref|YP_607993.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila L48] gi|95110482|emb|CAK15190.1| putative transcriptional regulator, Cro/CI family [Pseudomonas entomophila L48] Length = 180 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 29/60 (48%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R LG++ E L E G+T + K E+G+N + ++ L + FD Sbjct: 4 RLKLLRKKLGITLEVLAEKSGMTKSYLSKVERGLNTPSIAAALKLARALNVNVEELFDGE 63 >gi|94995138|ref|YP_603236.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10750] gi|94548646|gb|ABF38692.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10750] Length = 68 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R +SQ+ L + +G++ Q + EKG + I VL+ + F + Sbjct: 5 KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLFWEA 64 Query: 78 PTV 80 Sbjct: 65 DDS 67 >gi|70727313|ref|YP_254229.1| hypothetical protein SH2314 [Staphylococcus haemolyticus JCSC1435] gi|68448039|dbj|BAE05623.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 61 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RIR R +SQE L + L ++ Q + E + ++++ ++ + F Sbjct: 3 NRIREYRKQKRISQEALSKELKVSRQTINAIENNKYDPTLTLAFKLAKLFDTTVDELFS 61 >gi|1171067|sp|P43640|MUNC_MYCSP RecName: Full=Regulatory protein munI gi|431929|emb|CAA53787.1| MunI regulatory protein [Mycoplasma sp.] Length = 74 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 1/73 (1%) Query: 9 NPVDINVGKRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N + I G +++ R +SQE + + E G V L+ IS L Sbjct: 2 NDIKIRFGNKLKKLRKEKTDLSQESFAAQIDLDRTYYSSIENGKRNVSLVNLEKISAGLG 61 Query: 68 SPISFFFDVSPTV 80 +S F Sbjct: 62 ITLSELFSDIEKE 74 >gi|85709950|ref|ZP_01041015.1| transcriptional regulator, Cro/CI family protein [Erythrobacter sp. NAP1] gi|85688660|gb|EAQ28664.1| transcriptional regulator, Cro/CI family protein [Erythrobacter sp. NAP1] Length = 63 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 27/61 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R SQ+ L + LG++ Q V EKG +ISEV PI F Sbjct: 3 NRLKVLRAERDWSQQDLADRLGVSRQSVNAIEKGRYDPSLPLAFNISEVFGLPIEEIFSR 62 Query: 77 S 77 Sbjct: 63 D 63 >gi|328910532|gb|AEB62128.1| yqaE hypothetical protein [Bacillus amyloliquefaciens LL3] Length = 126 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 39/123 (31%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G ++R R +SQ+ LG+ G+ + YE+ + L ++ + F Sbjct: 1 MRFGDQLRQLRKQRKLSQKSLGQKFGLAESTISMYERNEREPDYATLVKFADFFDVSTDF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + DG + + + ++I + + I KK Sbjct: 61 LLRGEDYYRDKARELRKQNDVRFAAVDGREFSDSEKEEILADALRRIDGIEKIIEERFKK 120 Query: 133 YRT 135 Sbjct: 121 KNE 123 >gi|322376311|ref|ZP_08050804.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] gi|321282118|gb|EFX59125.1| toxin-antitoxin system, antitoxin component, Xre family [Streptococcus sp. M334] Length = 158 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q+ +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHDLTQDDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|306824544|ref|ZP_07457890.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|306830126|ref|ZP_07463310.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304427652|gb|EFM30748.1| XRE family transcriptional regulator [Streptococcus mitis ATCC 6249] gi|304433331|gb|EFM36301.1| XRE family transcriptional regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 64 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R LG+SQ L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKELGISQLDLAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLFWE 61 Query: 77 SP 78 Sbjct: 62 DD 63 >gi|258540564|ref|YP_003175063.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|257152240|emb|CAR91212.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 215 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R ++Q ++G L ++ + + +E G + S L IS++ + + Sbjct: 6 KLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQLLRED 65 Query: 78 PT 79 Sbjct: 66 QD 67 >gi|229552822|ref|ZP_04441547.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|229313804|gb|EEN79777.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] Length = 223 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R ++Q ++G L ++ + + +E G + S L IS++ + + Sbjct: 14 KLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQLLRED 73 Query: 78 PT 79 Sbjct: 74 QD 75 >gi|199599444|ref|ZP_03212837.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|199589656|gb|EDY97769.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] Length = 216 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R ++Q ++G L ++ + + +E G + S L IS++ + + Sbjct: 6 KLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQLLRED 65 Query: 78 PT 79 Sbjct: 66 QD 67 >gi|163800499|ref|ZP_02194400.1| transcriptional regulator, HTH_3 family protein [Vibrio sp. AND4] gi|159175942|gb|EDP60736.1| transcriptional regulator, HTH_3 family protein [Vibrio sp. AND4] Length = 207 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLANGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|145595917|ref|YP_001160214.1| cupin 2 domain-containing protein [Salinispora tropica CNB-440] gi|145305254|gb|ABP55836.1| Cupin 2, conserved barrel domain protein [Salinispora tropica CNB-440] Length = 215 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 2/106 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R + L GI+ + + E G R L ++ + Sbjct: 30 AVGPRLRALRHKRATTLTDLSAQTGISVSTLSRLESGTRRPTLELLLPLARAHGVTLDEL 89 Query: 74 FDVSPTVCSDISSEENNVMDFISTP--DGLQLNRYFIQIDDVKVRQ 117 PT I D P G + F I R+ Sbjct: 90 VGAPPTGDPRIHLRPVIRHDMTVLPLTRGAGGIQAFKLIIPTSKRE 135 >gi|326440871|ref|ZP_08215605.1| XRE family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 454 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEV 65 +P+ ++G R+R+ R G SQ +L + LG T + E G + + I++ Sbjct: 1 MPSYDADHIGTRVRIARTAAGFSQVQLADFLGRTESWMANVESGRQPLDRYSVITAIADQ 60 Query: 66 LESPISFFF 74 + + + Sbjct: 61 CDVDVVWLL 69 >gi|300717762|ref|YP_003742565.1| transcriptional regulator, XRE family [Erwinia billingiae Eb661] gi|299063598|emb|CAX60718.1| transcriptional regulator, XRE family [Erwinia billingiae Eb661] Length = 69 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + GKR+ L R ++QE L E + + E G S + +++ L Sbjct: 1 MKTLLQVYFGKRVALLRKDKHLTQEALAEACDLNRTYLSGLETGKRNPSLSTISKLAKAL 60 Query: 67 ESPISFFF 74 + F Sbjct: 61 GIQMKEIF 68 >gi|227511268|ref|ZP_03941317.1| possible XRE family transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227085519|gb|EEI20831.1| possible XRE family transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 75 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++++ R +G++QE+L L ++ + V +E G + L +S E I F Sbjct: 6 KVKVCRNKMGLTQEELSVKLNVSRKTVSAWENGRSYPDIQMLILLSNFFEISIDAFLRDE 65 >gi|196043612|ref|ZP_03110850.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225864505|ref|YP_002749883.1| DNA-binding protein [Bacillus cereus 03BB102] gi|229184749|ref|ZP_04311948.1| hypothetical protein bcere0004_23090 [Bacillus cereus BGSC 6E1] gi|196025921|gb|EDX64590.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225786797|gb|ACO27014.1| DNA-binding protein [Bacillus cereus 03BB102] gi|228598763|gb|EEK56384.1| hypothetical protein bcere0004_23090 [Bacillus cereus BGSC 6E1] Length = 66 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RI + R G +QE+L + +G++ Q + EK I+ V E I+ Sbjct: 1 MLHNRIVVYRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSITDV 60 Query: 74 FDVSPT 79 FD Sbjct: 61 FDYQEE 66 >gi|148976562|ref|ZP_01813258.1| transcriptional regulator, putative [Vibrionales bacterium SWAT-3] gi|145964138|gb|EDK29395.1| transcriptional regulator, putative [Vibrionales bacterium SWAT-3] Length = 108 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 4/77 (5%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEV 65 +D + R++ R +SQ++LG +GI + + EKG + S L+ +++ Sbjct: 2 SIDNPIPVRLKEVRKKAKISQKELGVRIGIDESSASARMNQDEKGKHTPDISTLKKMADE 61 Query: 66 LESPISFFFDVSPTVCS 82 L P+++FF + Sbjct: 62 LGVPLNYFFCEDESSAE 78 >gi|19263421|ref|NP_597807.1| DNA binding protein [Streptococcus phage Sfi21] Length = 170 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 36/82 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ L R +++ +L E +G++ V K+E G +++ + +++ + + + Sbjct: 2 NRLYLLRESRKITRVELAEKIGVSKLTVLKWEHGTSKISRREAKKLADFFGVSVGYLLGL 61 Query: 77 SPTVCSDISSEENNVMDFISTP 98 T I+ + ++ + Sbjct: 62 DTTENDSITDLIAKINEWAISH 83 >gi|114564571|ref|YP_752085.1| transcriptional regulator, XRE family protein [Shewanella frigidimarina NCIMB 400] gi|114335864|gb|ABI73246.1| transcriptional regulator, XRE family protein [Shewanella frigidimarina NCIMB 400] Length = 64 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R ++Q +L + L ++ Q V E G + + + PI F+ Sbjct: 3 NRLKVLRAEQDLTQAQLADLLDVSRQTVNAIETGKFDPSLPLAFKAARLFKLPIESIFED 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|325266057|ref|ZP_08132743.1| XRE family transcriptional regulator [Kingella denitrificans ATCC 33394] gi|324982695|gb|EGC18321.1| XRE family transcriptional regulator [Kingella denitrificans ATCC 33394] Length = 102 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R +SQ+ L + + ++ Q V E S +++ L++ ++ F Sbjct: 35 NRVRQFRKQKQLSQQALADLVEVSRQTVNMIENQDYNPTLSLCIRLAKALDTDLNALFWE 94 Query: 77 SPTV 80 Sbjct: 95 EEDE 98 >gi|312868437|ref|ZP_07728637.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096182|gb|EFQ54426.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 248 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 43/86 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ RR L +Q+ + + LG+++Q +E+GV + ++Q + ++L P FF ++ Sbjct: 5 EKLKARRKELKKTQKDIADQLGVSYQAYSAWERGVKQPSREKVQQLEQILNVPKGFFTEI 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ 102 + S+E + +Q Sbjct: 65 EIVRLYNTLSDEGKNNALNYVRNLVQ 90 >gi|302338674|ref|YP_003803880.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301635859|gb|ADK81286.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 113 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 39/105 (37%), Gaps = 3/105 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ +QE + G++F +K+ A + I+EVL++ + + Sbjct: 5 ERLKTLIKEQKTTQEWVANKTGVSFGTFRKWMSRKTMPNADQAVEIAEVLDTTVEYLVTG 64 Query: 77 SPTVCSDISSEENNVMDFIS--TPDGLQLNRYF-IQIDDVKVRQK 118 + ++++ + L+ R + D ++ Sbjct: 65 KNPDNWQVPKRYADIVEDLEALDEKDLETVRALTSSLADRSAQRA 109 >gi|288904231|ref|YP_003429452.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|288730956|emb|CBI12500.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] Length = 175 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 21/56 (37%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 +SQE+L E L ++ Q + +E+G + L I+ + Sbjct: 3 KGKNLSQEELAEKLYVSRQTISNWERGKTYPDINSLLLIATYFGISLDNLIKGDVD 58 >gi|257887265|ref|ZP_05666918.1| predicted protein [Enterococcus faecium 1,141,733] gi|257823319|gb|EEV50251.1| predicted protein [Enterococcus faecium 1,141,733] Length = 130 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 5/118 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + G++++ R+ G+ +L G++ Q+ ++EKG L+ +S L IS Sbjct: 1 MEFGEKLKKLRISRGLGVNQLALKSGVSASQISRFEKGERKDPTLETLKKLSTALGVSIS 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI---QIDDVKVRQKIIELVRSI 126 +F + + V + E N D I L+ N + + Q++ +++ + Sbjct: 61 YF-EENSPVNVNTIPEWANEDDLIELDKLLESNANMAYGGETLTPEQLQRVRDVLAGM 117 >gi|302540449|ref|ZP_07292791.1| cro/CI family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458067|gb|EFL21160.1| cro/CI family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 196 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 10/84 (11%), Positives = 30/84 (35%), Gaps = 6/84 (7%) Query: 1 MVGNKKIP----NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 M+ +P + + ++ + ++ R G + + L G++ + + E+ Sbjct: 1 MMDG--MPVTDLDQLTQSLARNLKRWRNERGYTLDALAARAGVSRGMIIQIEQARTNPSV 58 Query: 57 SRLQHISEVLESPISFFFDVSPTV 80 +++ L I+ D Sbjct: 59 GTTVKLADALGVSITTLLDYEQEA 82 >gi|229029469|ref|ZP_04185551.1| Transcriptional regulator, Xre [Bacillus cereus AH1271] gi|228731822|gb|EEL82722.1| Transcriptional regulator, Xre [Bacillus cereus AH1271] Length = 404 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTEL-AGSKLTKSMLSQIENGKATPSMKTLQYIAEKLECEASFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ + Sbjct: 63 EDDDGEIVELIT 74 >gi|226303576|ref|YP_002763534.1| TetR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226182691|dbj|BAH30795.1| putative TetR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 308 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 40/113 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G IR R G+S +L L ++ + E G RV RL I +L Sbjct: 24 VLIGASIRQARRHSGLSLRELARRLDVSPATLSAVETGKTRVSVDRLAAIGGILGVRFDA 83 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + + + D + + R+ D + + E+V++ Sbjct: 84 LLPAAIVRPPEQPRWGGDDADPDAHFRPNEWRRFGPSSFDPVLAAALAEMVKT 136 >gi|224536634|ref|ZP_03677173.1| hypothetical protein BACCELL_01510 [Bacteroides cellulosilyticus DSM 14838] gi|224521725|gb|EEF90830.1| hypothetical protein BACCELL_01510 [Bacteroides cellulosilyticus DSM 14838] Length = 130 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 35/68 (51%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VG+R++L RM ++QE++GE L ++ K E G + +RL I+EV+ Sbjct: 1 METDLKKIVGQRLQLLRMEKNLTQEQMGEKLNLSTSAYCKIEYGETDLTLTRLNKIAEVM 60 Query: 67 ESPISFFF 74 F Sbjct: 61 NMSAIDLF 68 >gi|9634643|ref|NP_038317.1| ORF16 [Streptococcus phage 7201] gi|7248473|gb|AAF43509.1|AF145054_17 ORF16 [Streptococcus phage 7201] Length = 183 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R ++Q +L + +G+T + + +EK A +LQ +++ E IS+ D Sbjct: 2 NRIKQLRKSRKLTQAELADLIGVTKRTIIHWEKYGFS-SADKLQELADCFEVSISYLLDY 60 Query: 77 S 77 Sbjct: 61 D 61 >gi|313898821|ref|ZP_07832355.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956403|gb|EFR38037.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 73 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 28/63 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R MSQ++L + +G++ Q + + E+ I++V + I FD Sbjct: 11 SKIHVYRATKRMSQQELADLVGVSRQTIIQLERNRYNPSMLLAYSIAKVFDVTIEDLFDF 70 Query: 77 SPT 79 Sbjct: 71 RED 73 >gi|309776057|ref|ZP_07671048.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 3_1_53] gi|308916008|gb|EFP61757.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 3_1_53] Length = 92 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G + R G+SQE + E LG++ Q V K+E + + ++ + Sbjct: 8 MKLGNSLFQARRKSGLSQEAVAEKLGVSRQTVSKWETDETVPDICQSKKMAVFYNMTLDD 67 Query: 73 FFDVS 77 D Sbjct: 68 LIDFD 72 >gi|260909704|ref|ZP_05916398.1| DNA-binding protein [Prevotella sp. oral taxon 472 str. F0295] gi|260636129|gb|EEX54125.1| DNA-binding protein [Prevotella sp. oral taxon 472 str. F0295] Length = 184 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 27/69 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R +L + E++ + I+ + K E G RL IS+ + Sbjct: 8 IGQRLKGLREVLNIPAEEIADLCEISLEHYLKMEDGTADPSVYRLAKISKRYGIDLDVLL 67 Query: 75 DVSPTVCSD 83 S Sbjct: 68 FGEEPRMSA 76 >gi|260910939|ref|ZP_05917580.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260634930|gb|EEX52979.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 110 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Query: 2 VGNKKIPNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 K++ ++ VG+ IR R ++Q++LG+ +G+ Q+ K E G + + + Sbjct: 27 TMEKRLKEEINAYYVGEAIRKARTAQHLTQDELGKLIGVQRSQICKLESGKSVITLPTMS 86 Query: 61 HISEVLESPISFF 73 + + L + Sbjct: 87 RVFQALGISTATL 99 >gi|253689002|ref|YP_003018192.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755580|gb|ACT13656.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 137 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 30/75 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R +G SQ + E LG T + KYE+G + L +SE + Sbjct: 12 IGGRLREERETIGKSQSAIAEELGTTTRTWGKYERGETAPDGATLAFLSENYGMDTLYIL 71 Query: 75 DVSPTVCSDISSEEN 89 T S + Sbjct: 72 TGKRTPDLGDISNDE 86 >gi|229043538|ref|ZP_04191247.1| Transcriptional regulator, Xre [Bacillus cereus AH676] gi|228725760|gb|EEL77008.1| Transcriptional regulator, Xre [Bacillus cereus AH676] Length = 404 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 2/130 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I++ LE SF Sbjct: 4 LGEKIKTLRKEKKLTQTDL-AGSELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + ++ + ++ + ++ +Q + L + V++ K + Sbjct: 63 EDDDVEIVELIQQTEKLIKANKYDEVYEVLLPIVQKELPPTLNT-ARLYKQFVTAAAKMK 121 Query: 135 TIEEECMVEQ 144 E VE+ Sbjct: 122 DYNIEYYVEK 131 >gi|291326325|ref|ZP_06124059.2| peptidase, S24 family [Providencia rettgeri DSM 1131] gi|291314825|gb|EFE55278.1| peptidase, S24 family [Providencia rettgeri DSM 1131] Length = 229 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R+ M+Q +L + LG+T Q VQ++E +R+ I+E+L + Sbjct: 6 ERIKQARLAKKMTQAELAQQLGVTPQSVQQWETST-EPRKNRVMKIAEILSVDAEWLLFG 64 Query: 77 SPTVCSDISSE 87 + + + Sbjct: 65 TAKKDGVPAKD 75 >gi|212638622|ref|YP_002315142.1| putative xre family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212560102|gb|ACJ33157.1| Predicted transcriptional regulator, xre family [Anoxybacillus flavithermus WK1] Length = 74 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ +R+ G++Q+++ + +GI+ E G S + I++ L+ + FFD Sbjct: 5 LKKKRLDTGLTQKEIAKLVGISRSTYAMIENGERNPSVSVAKRIADALKFDWTIFFDD 62 >gi|191636948|ref|YP_001986114.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|190711250|emb|CAQ65256.1| Transcriptional regulator, xre family [Lactobacillus casei BL23] gi|327384151|gb|AEA55625.1| Transcriptional regulator [Lactobacillus casei BD-II] Length = 202 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 27/73 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++ RM M+Q L E L ++ V +E N + I+ + E + Sbjct: 5 KQLHQIRMAHQMTQVNLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDTLILD 64 Query: 77 SPTVCSDISSEEN 89 P + + + Sbjct: 65 DPKLNEKLIHDSK 77 >gi|148652624|ref|YP_001279717.1| bifunctional HTH-domain containing protein/aminotransferase [Psychrobacter sp. PRwf-1] gi|148571708|gb|ABQ93767.1| aminotransferase [Psychrobacter sp. PRwf-1] Length = 543 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECL-----GITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G R+ R G++ E+L + ++ + +E+G+N + +S+L ++ +L Sbjct: 11 GARLSKLRKAKGLTAEQLATAMTASGSKVSRGAISNWERGINGIVSSKLPALAHILGCSE 70 Query: 71 SFFFDVSPTVCSDISSEE 88 + P ++ + Sbjct: 71 GYLLRGEPADNAEPDNST 88 >gi|327393407|dbj|BAK10829.1| putative transcriptional regulator from phage origin [Pantoea ananatis AJ13355] Length = 230 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPIS 71 +N+G +IR R GM E+L E +G+ + + E G + + I++ L+ +S Sbjct: 1 MNIGNKIRSLRKARGMKIEELAEAVGVDGANISRLETGKQKSFTEQSINKIAKALKVDVS 60 Query: 72 FFF 74 F Sbjct: 61 ELF 63 >gi|328544415|ref|YP_004304524.1| transcription regulator protein [polymorphum gilvum SL003B-26A1] gi|326414157|gb|ADZ71220.1| Putative transcription regulator protein [Polymorphum gilvum SL003B-26A1] Length = 131 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 42/110 (38%), Gaps = 6/110 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI L R G+S +L LG+ +Q +E ++RL ++ VL ++ Sbjct: 21 LGERICLARDAAGLSTAQLARRLGVRTATLQAWESDRAEPRSNRLVLLAGVLGVSPTWLL 80 Query: 75 ----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 D + D ++ Q QID R +++ Sbjct: 81 VGRGDGPMEPDETAVATAGLRADLLAMRAQAQALT--DQIDSALGRLEVL 128 >gi|312794293|ref|YP_004027216.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181433|gb|ADQ41603.1| helix-turn-helix domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 68 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF 74 G++IR R G+SQ + + G++ + + E G S ++ IS+ L+ I F Sbjct: 4 GRKIRELRKSKGLSQREFAKLAGLSQSYISELENGIKTNPSLSVIKKISKALKVDIKVFI 63 Query: 75 DVSP 78 + Sbjct: 64 EEGE 67 >gi|304438972|ref|ZP_07398895.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372638|gb|EFM26221.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 68 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 23/66 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G++QE+L L ++ Q + E G I++ + I F Sbjct: 3 NRLEEIRKSRGITQEELANILEVSRQTIGSLENGRYNPSIILAFKIAKFFKLTIEDIFIY 62 Query: 77 SPTVCS 82 Sbjct: 63 EEEENE 68 >gi|296113347|ref|YP_003627285.1| aminotransferase class I and II [Moraxella catarrhalis RH4] gi|295921041|gb|ADG61392.1| aminotransferase class I and II [Moraxella catarrhalis RH4] Length = 546 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 7/98 (7%) Query: 7 IPNPVDINV--GKRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRL 59 + +P + + G R++LRR LG+S E L + ++ + +E G N + S+L Sbjct: 17 MNDPQNTIIKQGLRLKLRRKALGLSAEALASKMSELGVPVSRGAIANWECGKNGIVMSKL 76 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 ++ L S+ + N + ST Sbjct: 77 PILAAALGVSESYLISGDHLTLQTTKQKTVNEIWPKST 114 >gi|300772908|ref|ZP_07082777.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300759079|gb|EFK55906.1| transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 259 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 25/67 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R G++Q++ + + I V YE+ L+ I+E + + Sbjct: 4 IASNLKYIRKKKGLTQQQFADLMEIKRASVGAYEEDRAEPKYELLKKIAEYFDLTMDELA 63 Query: 75 DVSPTVC 81 + Sbjct: 64 NDVIDDK 70 >gi|160942751|ref|ZP_02089992.1| hypothetical protein FAEPRAM212_00228 [Faecalibacterium prausnitzii M21/2] gi|158445916|gb|EDP22919.1| hypothetical protein FAEPRAM212_00228 [Faecalibacterium prausnitzii M21/2] Length = 220 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 45/112 (40%), Gaps = 7/112 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R G++Q +L E L +T + V ++E+G+ + L+ +++ L ++ Sbjct: 7 GNYLSRMRKAQGLTQAELAEQLHVTDKAVSRWERGIGLPDINTLEPLADALGLTLADLMH 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 +D + F + R +D VR ++ L ++ Sbjct: 67 CRAPEEADAAPTIPLEDFF-------TMLRRQHIVDWHSVRTALLGLSIALA 111 >gi|52786374|ref|YP_092203.1| SinR [Bacillus licheniformis ATCC 14580] gi|319645045|ref|ZP_07999278.1| HTH-type transcriptional regulator sinR [Bacillus sp. BT1B_CT2] gi|52348876|gb|AAU41510.1| SinR [Bacillus licheniformis ATCC 14580] gi|317392854|gb|EFV73648.1| HTH-type transcriptional regulator sinR [Bacillus sp. BT1B_CT2] Length = 113 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G+RI+ R G S +L E G+ + E+ L+ +S VL+ + Sbjct: 4 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 63 Query: 74 FDVSPTVCSDISSEEN 89 D D + Sbjct: 64 LDEKDETEYDGQLDSE 79 >gi|328463631|gb|EGF35234.1| hypothetical protein AAULH_12526 [Lactobacillus helveticus MTCC 5463] Length = 84 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +++ R+ LG++QE+ + +T + E + + L I + Sbjct: 1 MNIGNQLKNIRVFLGLTQEQFCAGI-VTESFYSRVENNRSNISMEDLVEILNFHHISLYD 59 Query: 73 FF 74 FF Sbjct: 60 FF 61 >gi|304314848|ref|YP_003849995.1| transcriptional regulator [Methanothermobacter marburgensis str. Marburg] gi|302588307|gb|ADL58682.1| predicted transcriptional regulator [Methanothermobacter marburgensis str. Marburg] Length = 182 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 30/68 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R+R R + ++++++ L I + ++YE G + AS L I+ + + Sbjct: 6 KEIGSRVRELRELSEITEDEMASYLNIDVETYRRYETGEEDIPASILFEIAHKMGVDMGL 65 Query: 73 FFDVSPTV 80 T Sbjct: 66 LLTGEETR 73 >gi|317131818|ref|YP_004091132.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469797|gb|ADU26401.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 186 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 32/91 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I+ RR+ +G S ++ I+ + E G L+ + + L P+ Sbjct: 6 IGQTIKDRRIKMGKSIREIASACEISPSTISMIENGKTSPNLLTLKAVCDALNIPVFSLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + N + + +G L Sbjct: 66 LDEDEDRIRLVRRSNQITFIRNASNGQSLVE 96 >gi|260890727|ref|ZP_05901990.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] gi|260859605|gb|EEX74105.1| toxin-antitoxin system, antitoxin component, Xre family [Leptotrichia hofstadii F0254] Length = 203 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 4/112 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R ++Q L E GI+ + KYE+G+N L+ +++ + I F + Sbjct: 14 LKELRKKKNLTQRGLAEKTGISLAMITKYEQGLNTPSIENLRVLADFFKVSIRNFLEEDR 73 Query: 79 TVCS--DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + E I D ++ F+ I K RQ I +++ + + Sbjct: 74 DRDRVFKVFLSEEEASIDIENYDSSTNDKKFLSIS--KGRQYIYHILKFLEA 123 >gi|255513995|gb|EET90259.1| transcriptional regulator, XRE family [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 291 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 56/138 (40%), Gaps = 14/138 (10%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K +PN G+ I+ R + GMS+E L + +G++ + +YE G + + L+ + Sbjct: 121 EKSMPN------GELIKSLRKLSGMSREDLAKEVGLSKDSIYRYESGKSWISKKNLKKLE 174 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + F + V I + + D F I + R +I L Sbjct: 175 DYFGRSLKFDTEEYANVLEPIGTSSKGMKFTYIRKDP------FRMIGKGRKRYEIGRLA 228 Query: 124 --RSIVSSEKKYRTIEEE 139 R++ + YR + EE Sbjct: 229 NQRTMKKWSEFYRKLNEE 246 >gi|170782465|ref|YP_001710798.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|169157034|emb|CAQ02207.1| putative DNA-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 107 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 27/73 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R+R +R +G+SQE L E GI + + K E+G + I+ L+ Sbjct: 11 EFGSRVREQRQRIGISQETLAELSGIHWTALGKIERGQRNPSLRNIIKIASGLDVDAGLL 70 Query: 74 FDVSPTVCSDISS 86 Sbjct: 71 VTGLTADMLPQDD 83 >gi|206971702|ref|ZP_03232652.1| transcriptional regulator, XRE family [Bacillus cereus AH1134] gi|206733687|gb|EDZ50859.1| transcriptional regulator, XRE family [Bacillus cereus AH1134] Length = 292 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ F Sbjct: 6 LGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYIF 64 Query: 75 DVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + D + +L + + Sbjct: 65 ALTKNKKIKYIENVKCVMRDCVKQKQYNELYEIVKKEKNDN 105 >gi|52080997|ref|YP_079788.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52004208|gb|AAU24150.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] Length = 111 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 1/77 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R G S +L E G+ + E+ L+ +S VL+ + Sbjct: 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60 Query: 73 FFDVSPTVCSDISSEEN 89 D D + Sbjct: 61 LLDEKDETEYDGQLDSE 77 >gi|320101058|ref|YP_004176650.1| XRE family transcriptional regulator [Desulfurococcus mucosus DSM 2162] gi|319753410|gb|ADV65168.1| transcriptional regulator, XRE family [Desulfurococcus mucosus DSM 2162] Length = 294 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 41/96 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ +R +G+++ +L E LG++ + + YEKG + + ++ V+ + D+ Sbjct: 135 SRLHEKRKEIGLTRGELAEMLGVSRKTIYMYEKGELMISLQKGIELARVIGEDVFDEIDI 194 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + ++ +S + R ++ + Sbjct: 195 FSDKIEAPALDDIREEPLLSDEIEETIWRLLNRLSN 230 >gi|294500383|ref|YP_003564083.1| transcriptional regulator [Bacillus megaterium QM B1551] gi|294350320|gb|ADE70649.1| transcriptional regulator [Bacillus megaterium QM B1551] Length = 77 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +++ R+ + ++Q++L + +GIT Q V EKG I V+E + Sbjct: 9 LFIKNNVKVVRVKMNLTQQQLADKVGITRQTVSLIEKGQYNPSLKLCLQICYVVEETLDE 68 Query: 73 FFDVSPT 79 F + Sbjct: 69 LFWIDKE 75 >gi|256377995|ref|YP_003101655.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922298|gb|ACU37809.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 197 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 30/74 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RIR R G+S +L E G++ + + + E G S + ++ L + S Sbjct: 11 VLLGNRIRALRKAAGLSVVRLAELSGVSRRMLTQIELGQANPSLSTVDRVASALGTTFSA 70 Query: 73 FFDVSPTVCSDISS 86 V + Sbjct: 71 LAGVLGDPLPEGVE 84 >gi|254295299|ref|YP_003061322.1| XRE family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254043830|gb|ACT60625.1| transcriptional regulator, XRE family [Hirschia baltica ATCC 49814] Length = 194 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 35/90 (38%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ D ++ +R++ R S ++L E GI+ + + EKG A L + Sbjct: 12 PSFTDADLAQRLKELRAEQNWSLDQLAEISGISRGTLFRLEKGEVSPTAHVLGKLCPAYG 71 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFIST 97 +S + T S + + + + Sbjct: 72 LTMSRLMAMVETQFSALIPRGEQKIWYDAD 101 >gi|257791450|ref|YP_003182056.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257475347|gb|ACV55667.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 183 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R +S+E + L + + ++E+ + V S + H++ + Sbjct: 7 EIGLRIKGLREACDVSREDMAAELEVPLETYVRWEETGDDVPISAIYHMAHHFGVEFTEI 66 Query: 74 FDVSPTVCS 82 + Sbjct: 67 LTGTAAKLD 75 >gi|167747793|ref|ZP_02419920.1| hypothetical protein ANACAC_02514 [Anaerostipes caccae DSM 14662] gi|167653155|gb|EDR97284.1| hypothetical protein ANACAC_02514 [Anaerostipes caccae DSM 14662] Length = 352 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 44/92 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR R+ G++QE++ LG++ V K+EK V+ + L ++ +LE+ ++ Sbjct: 1 MKINEMIRELRIKKGLTQEQMASLLGVSAPAVNKWEKAVSYPDITLLPALARLLETDLNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + ++ N + + +G + Sbjct: 61 LLSFKEEPTKEEITDFLNELAADVSSNGAEHA 92 >gi|153811705|ref|ZP_01964373.1| hypothetical protein RUMOBE_02098 [Ruminococcus obeum ATCC 29174] gi|149832108|gb|EDM87193.1| hypothetical protein RUMOBE_02098 [Ruminococcus obeum ATCC 29174] gi|291540232|emb|CBL13343.1| Helix-turn-helix [Roseburia intestinalis XB6B4] Length = 152 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFF 74 G+++R R MSQ++L +G++++ ++ +E + L +++ L+ +S+ Sbjct: 17 GEKVRSLRKEKKMSQQELASMVGVSYRTIRSWEVEGRFPKQNVLYQKLADALQCDVSYLM 76 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + ++ S + N + Q F Sbjct: 77 SENEAFITEASEQFGNRGARQAQQILEQAAAMFA 110 >gi|126010900|ref|YP_001039870.1| putative repressor protein [Vibrio phage VP882] gi|123203910|gb|ABM73422.1| putative repressor protein [Vibrio phage VP882] Length = 243 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 2/84 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQ--VQKYEKGVNRVGASRLQHISEVLESPISFF 73 G IR R G + +++ E + Q + + E+G ++I+ L + + Sbjct: 31 GNVIRRLRKAKGWTLQRVCEEMNGAIQTGHLSRIERGELTPSVYIARNIARSLGTSLDTM 90 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 + + + + Sbjct: 91 LAEADGGPLAQVVPDPAQRVPVLS 114 >gi|221065568|ref|ZP_03541673.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] gi|220710591|gb|EED65959.1| transcriptional regulator, XRE family [Comamonas testosteroni KF-1] Length = 108 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECL----GITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G R++ R+ G+SQ+ LG + ++ +YE G+++ ++ ++EVL+ P++ Sbjct: 9 GARLKQARLAAGLSQKMLGIEAGIDAFVASTRINRYELGIHKPDLLTVRKLAEVLKVPVA 68 Query: 72 FFFDVSPTVCSDIS 85 FF+ + +++ Sbjct: 69 FFYADTDDEIAELL 82 >gi|126700771|ref|YP_001089668.1| putative phage DNA-binding protein [Clostridium difficile 630] gi|115252208|emb|CAJ70047.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 253 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 2/106 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES--PI 70 + +GK ++ R ++Q +L E GI+ + YE L +++ L+ I Sbjct: 1 MQIGKNLKKIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIEKTI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 +F + + ++ + + + + +R Sbjct: 61 FYFDIENEVMTNEDVLYLLQSLFPEEYYSFDEFLNAISNLMEDDIR 106 >gi|29834073|ref|NP_828707.1| transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29611198|dbj|BAC75242.1| putative transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 417 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 7/120 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR-L 59 M K +P D G+R++ R +Q + LG T + + E+G+ V L Sbjct: 1 MKPTGKDVDPQDRVFGQRVQKLRKEQRRTQAEFAAALGKTSSWMSQVERGIQPVQRMDLL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 Q I++ L + S + +S + L R I +R + Sbjct: 61 QQIADELGVSVQQL-----RPSVADGSGPSQHPAPLSLSNDLDETRRLIS-GHPALRALL 114 >gi|86608150|ref|YP_476912.1| hypothetical protein CYB_0663 [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556692|gb|ABD01649.1| conserved domain protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 132 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 5/83 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ-----KYEKGVNRVGA 56 + + +P +G+R+R R L ++Q++L L Q+ + EKG RV Sbjct: 48 MESNDRHHPSANLIGERVRWVREKLQLTQDQLAGRLAKYGVQLDYVKIGQVEKGKRRVID 107 Query: 57 SRLQHISEVLESPISFFFDVSPT 79 L ++ L +++ + Sbjct: 108 KELVAFAKALGVSVTWLLSGDES 130 >gi|85715936|ref|ZP_01046913.1| transcriptional regulatory protein [Nitrobacter sp. Nb-311A] gi|85697134|gb|EAQ35015.1| transcriptional regulatory protein [Nitrobacter sp. Nb-311A] Length = 77 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ + R+ G++QE+ + G + Q + E+G L +++ LE Sbjct: 7 VGQNVMRIRLEKGLTQEQFSDISGFSQQYLSGLERGKRNPTIVTLYELAKALEVSHVDL 65 >gi|329116763|ref|ZP_08245480.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907168|gb|EGE54082.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 225 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 37/84 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ +R LG Q++L E +G++ Q K+EKG+++ + + + L + + Sbjct: 6 KLKQKREELGFEQQELAERIGVSKQAYFKWEKGLSKPTKVNIAKLEKALNVTEGYLSEDE 65 Query: 78 PTVCSDISSEENNVMDFISTPDGL 101 + +E N D + Sbjct: 66 ISSLYKQLTEPNQEKAITYVRDMV 89 >gi|255016915|ref|ZP_05289041.1| DNA-binding protein [Listeria monocytogenes FSL F2-515] Length = 106 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 44/104 (42%), Gaps = 2/104 (1%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV-SPTV 80 R ++Q++L +G T + KYE +R L ++E+L + F D + Sbjct: 1 LRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPIFILAKLAEILGTTTDFLLDDVAGLR 60 Query: 81 CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + + + L+L + + D++ + ++I + + Sbjct: 61 EKNSVNAFPLIGNPELEKWYLELPYTYSE-DELLMLKRIADAIE 103 >gi|262199754|ref|YP_003270963.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262083101|gb|ACY19070.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 126 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 11/131 (8%) Query: 7 IPNPVDINV----GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + + D + + +R R+ ++QE + E L ++ ++YE+ R + Sbjct: 1 MAHDPDEALRRSFARNVRKARVRRQLTQEDVAEALDVSPTVYRRYERAQIWPVLERFTRL 60 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK--II 120 EVL F + + +P +LNR R ++ Sbjct: 61 CEVLSCSADELFGFRE-----LDTRRRPRARDDDSPALRRLNRQLRTASPAACRLACEVL 115 Query: 121 ELVRSIVSSEK 131 +L+R + E+ Sbjct: 116 DLLRPLHRHER 126 >gi|222106747|ref|YP_002547538.1| transcriptional regulator [Agrobacterium vitis S4] gi|221737926|gb|ACM38822.1| transcriptional regulator [Agrobacterium vitis S4] Length = 219 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 33/77 (42%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N +++ +G +R R LG++ L G++ + K E G LQ +S+ L Sbjct: 28 ANNLEMAIGHEVRTFRKKLGITVADLATATGMSVGMLSKIENGNISASLGTLQSLSKALG 87 Query: 68 SPISFFFDVSPTVCSDI 84 P++ FF S Sbjct: 88 VPMTAFFKGYEEPRSAS 104 >gi|254513121|ref|ZP_05125187.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221533120|gb|EEE36115.1| DNA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 193 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 2/74 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +KK + +G+ ++ R ++ +L ++ + + E G LQ Sbjct: 1 MQDKKTETEL--EIGRTLQRLRQERSLTVTELAARAKVSTPMISRIENGHVSPSLGTLQA 58 Query: 62 ISEVLESPISFFFD 75 +++ L + F Sbjct: 59 LADALSVSMMALFS 72 >gi|83720248|ref|YP_441361.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83654073|gb|ABC38136.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 224 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 4/106 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R G + + L E G+T + K E+G++ + +S+ L+ + F S Sbjct: 43 RLKLLRKQKGWTLDVLAEAAGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSES 102 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + S R + I +K++ V Sbjct: 103 RDRELITVTRAAQRAPMGSAAS----ARTYESIAAGVAPKKLLPFV 144 >gi|72257076|ref|YP_024899.2| gp42 [Burkholderia phage BcepB1A] gi|68165925|gb|AAT37757.2| gp42 [Burkholderia phage BcepB1A] Length = 77 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R M+ + + LG+ +QV +E G + L I + + + Sbjct: 8 RIIRLRRHRNMTVNQFAKYLGVGNKQVYTWEYGDSLPSFDMLYRIHTLTGVSLDWLVAG 66 >gi|86148029|ref|ZP_01066331.1| transcriptional regulator, putative [Vibrio sp. MED222] gi|85834162|gb|EAQ52318.1| transcriptional regulator, putative [Vibrio sp. MED222] Length = 103 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 28/121 (23%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISE 64 NP+ + R++ R +SQ+ LG C+G+ + +YEKG + L+ +++ Sbjct: 5 NPIPV----RLKEARKKAKLSQKSLGVCIGMDESSASPRMNQYEKGKHTPDVRTLKLLAD 60 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 L P+SFFF + ++ Q+ + + ++ I+ L++ Sbjct: 61 ELGVPLSFFFCEDESSA--------------------EIACLVAQMTEKEKKELILSLLK 100 Query: 125 S 125 S Sbjct: 101 S 101 >gi|330897428|gb|EGH28847.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 99 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++L R +SQ +L G+T + E+ S L+ + E + ++ FF Sbjct: 4 GARLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSISSLKKLLEGIPMTLADFFT 63 Query: 76 VSPTVCSD 83 D Sbjct: 64 FDQPPGQD 71 >gi|329115906|ref|ZP_08244623.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906311|gb|EGE53225.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 135 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 33/71 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++Q+ LG +G++ + K+EK S++ ++ + I + + Sbjct: 7 RLKELRKEKKITQQDLGNAIGVSRVTITKWEKEYIEPNISQITDLAIFFDVSIDYLTGKT 66 Query: 78 PTVCSDISSEE 88 S +++E Sbjct: 67 DLDYSKLNAES 77 >gi|313898654|ref|ZP_07832189.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956538|gb|EFR38171.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 118 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 10/121 (8%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +++ VG IR GM+Q++L +G T + + Y G + L I + Sbjct: 2 KKVTEINLRVGDAIRKGLQRKGMTQKELAALVGSTQRSISSYINGNAQPPLDILSLICRI 61 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE ++ + N + P L+ + F Q+ + + R +L++S Sbjct: 62 LEINMNQIL---------QIPDFNFPGRMLHDPMELEFMKIFDQVPEER-RMTFTKLMKS 111 Query: 126 I 126 I Sbjct: 112 I 112 >gi|301632617|ref|XP_002945378.1| PREDICTED: hypothetical protein LOC100487190 [Xenopus (Silurana) tropicalis] Length = 81 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 26/76 (34%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + V +G+ +R R G SQ L +G+ + E G N L + L Sbjct: 1 MEDVVSQALGQALRKLRTERGWSQSDLALRVGMDRNYLSLIELGRNSPSVRMLMRLCMAL 60 Query: 67 ESPISFFFDVSPTVCS 82 + + D Sbjct: 61 DVRTADVLDDVERRVQ 76 >gi|291279629|ref|YP_003496464.1| phosphate butyryltransferase [Deferribacter desulfuricans SSM1] gi|290754331|dbj|BAI80708.1| phosphate butyryltransferase [Deferribacter desulfuricans SSM1] Length = 507 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 43/126 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I+ G+ +E++ + L I ++ G + S+L IS L +S Sbjct: 12 GDNIKKLLAKKGLDKEEILDLLKIDEEEFNLILNGEVQPSVSQLLKISSFLNVTVSQLLY 71 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + I + L + + +V ++++ ++ + Sbjct: 72 GTDDYEKKVVKTTPQERVVIKRKEYLVYENLAPKFSNKEVEPFLVDIYKTKAIDIDESVH 131 Query: 136 IEEECM 141 EE + Sbjct: 132 NGEEFI 137 >gi|228942307|ref|ZP_04104846.1| hypothetical protein bthur0008_49370 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975236|ref|ZP_04135794.1| hypothetical protein bthur0003_49830 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981874|ref|ZP_04142169.1| hypothetical protein bthur0002_50330 [Bacillus thuringiensis Bt407] gi|228777986|gb|EEM26258.1| hypothetical protein bthur0002_50330 [Bacillus thuringiensis Bt407] gi|228784515|gb|EEM32536.1| hypothetical protein bthur0003_49830 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817351|gb|EEM63437.1| hypothetical protein bthur0008_49370 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942963|gb|AEA18859.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 65 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 5 NKIKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGLKVEEIFTL 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|229087647|ref|ZP_04219776.1| hypothetical protein bcere0022_42100 [Bacillus cereus Rock3-44] gi|228695688|gb|EEL48544.1| hypothetical protein bcere0022_42100 [Bacillus cereus Rock3-44] Length = 65 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 21/58 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R ++Q ++ + + +T Q + E I++ + F Sbjct: 5 NRIKELRKQNNITQIEMAKAMQVTRQTIVAIENHRYNPSLELSLKIAKYFGMKVEDIF 62 >gi|169257276|ref|YP_001700652.1| putative bacteriophage regulatory protein; repressor; Lambda gpCI analog [Phage Gifsy-2] Length = 138 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 6/119 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K +P+ KRI+ G S L + ++ V+K+ G + RL+ Sbjct: 1 MNMNKNLHPIFA---KRIQQVLDENGWSMADLSRRVMLSHTSVRKWASGTSVASGERLKR 57 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +S V P +FF + E + L F Q+ + + + I+ Sbjct: 58 LSAVTGRPEYWFFM---EPGDESEGERAEPKPRVLDEKEETLLSLFNQLPEAEKLRVIL 113 >gi|209547982|ref|YP_002279899.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533738|gb|ACI53673.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 469 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 2/117 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L ++Q + E L I+ + E+ + L ++ V + Sbjct: 9 GPKLRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLATVYRVDLEELRG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + + P +L + +I+L R+ + Sbjct: 69 QTGGSLGQLKEVFADPLLLGELPGDQELVEVAEAAPNAA--SGMIKLYRAYREQAAR 123 >gi|153940683|ref|YP_001389936.1| DNA binding protein [Clostridium botulinum F str. Langeland] gi|152936579|gb|ABS42077.1| DNA binding protein [Clostridium botulinum F str. Langeland] gi|295318020|gb|ADF98397.1| DNA binding protein [Clostridium botulinum F str. 230613] Length = 70 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 29/67 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R M+Q++L + + ++ + + EKG I+ V + I + + Sbjct: 3 NRVKELRAASNMTQQQLADLVSVSSRTIISLEKGQYNPSIMLAYKIARVFNTTIEELYCL 62 Query: 77 SPTVCSD 83 + ++ Sbjct: 63 KENLENE 69 >gi|153008632|ref|YP_001369847.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560520|gb|ABS14018.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 96 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 28/76 (36%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + +R R+ G+SQ++L + V E+G L ++ L Sbjct: 7 DILEQLAFNLRRIRVANGISQDELALMSNVERAYVGHIERGKKNPTVITLDKLATALNCH 66 Query: 70 ISFFFDVSPTVCSDIS 85 I+ FF + + Sbjct: 67 IADFFAEIEEESENPT 82 >gi|194467173|ref|ZP_03073160.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454209|gb|EDX43106.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 293 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R +SQ +L L ++ Q V K+E G +L +++V + Sbjct: 7 HQLLKLRTEKQLSQAELATRLFVSRQAVSKWENGDAEPSIDKLILLAKVFNVSLDRLILG 66 Query: 77 SPTVCSDISSEENNVMDFIS 96 + + N V F S Sbjct: 67 TNDFNQPLVKLNNIVKTFNS 86 >gi|49658870|emb|CAF28496.1| putative DNA binding protein [Yersinia pseudotuberculosis] Length = 118 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 47/110 (42%), Gaps = 5/110 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R +SQEKLG GI +V +YEKG + ++ + +L P + Sbjct: 4 ERLKSARKTAKLSQEKLGVMAGIDEATARSRVSQYEKGFHTPSFELVKKFAMILNVPECY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 F+ V + + + + ++ D ++++ I+EL Sbjct: 64 FYIVDDVFAAAVLQMYYTHQVPFLQHPDYEKLKQAEKLVD-QLQKLIVEL 112 >gi|56419827|ref|YP_147145.1| hypothetical protein GK1292 [Geobacillus kaustophilus HTA426] gi|56379669|dbj|BAD75577.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] Length = 297 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +GKR+R R MS ++L E I + + E+G + +E + Sbjct: 3 ELGKRLREAREEKNMSLDELQEMTKIQKRYLIGIEEGNYAIMPGNFYVRAFIRQYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEE 88 F+ ++ Sbjct: 63 LDPDELFEQYKQDIPQSYQDD 83 >gi|281427978|ref|YP_003354932.1| XRE family DNA-binding protein [Lactococcus lactis subsp. lactis KF147] gi|281376605|gb|ADA66090.1| DNA-binding protein, XRE family [Lactococcus lactis subsp. lactis KF147] Length = 198 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 24/51 (47%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 R G++Q+++ + L IT Q + +E G N L +S+ + + Sbjct: 9 EERKKKGITQQEVADTLYITRQSLSNWENGKNFPDIPMLVELSKYYDFSLD 59 >gi|168211093|ref|ZP_02636718.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|168216129|ref|ZP_02641754.1| DNA-binding protein [Clostridium perfringens NCTC 8239] gi|170710849|gb|EDT23031.1| DNA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|182381582|gb|EDT79061.1| DNA-binding protein [Clostridium perfringens NCTC 8239] Length = 65 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R + MSQ +L + +G+ Q + E I++ L + ++ F V Sbjct: 2 NKIKEYRSLANMSQLELSKKVGVARQTINLIENQKYNPSLDLCIRIAKALGTDLNTLFWV 61 Query: 77 SPTV 80 + Sbjct: 62 NEEE 65 >gi|83716369|ref|YP_438206.1| DNA-binding protein [Burkholderia thailandensis E264] gi|167579250|ref|ZP_02372124.1| DNA-binding protein [Burkholderia thailandensis TXDOH] gi|167614637|ref|ZP_02383272.1| DNA-binding protein [Burkholderia thailandensis Bt4] gi|257141225|ref|ZP_05589487.1| DNA-binding protein [Burkholderia thailandensis E264] gi|83650194|gb|ABC34258.1| DNA-binding protein [Burkholderia thailandensis E264] Length = 202 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 30/89 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 25 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 + +++ QL Sbjct: 85 AQPKAPETIRVDGPHDIPTLAGHDAQYQL 113 >gi|328545630|ref|YP_004305739.1| transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326415700|gb|ADZ72763.1| Transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 174 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 17/117 (14%) Query: 15 VGKRIRLRRMILGMSQE-KLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R+R R G Q +L LGI+ V YE+G AS L ++V +++ Sbjct: 12 LAQRLRELRRQHGDPQRGELAGKLGISVTAVATYERGEREPAASVLAAYADVFGVNLNWL 71 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + +D + R I D + +++ LV + E Sbjct: 72 LTGEGEMFADPAKAP---------------ARAMPSI-DPALFRQVGRLVTRVHKEE 112 >gi|260684687|ref|YP_003215972.1| putative phage DNA-binding protein [Clostridium difficile CD196] gi|260688345|ref|YP_003219479.1| putative phage DNA-binding protein [Clostridium difficile R20291] gi|260210850|emb|CBA65947.1| putative phage DNA-binding protein [Clostridium difficile CD196] gi|260214362|emb|CBE06743.1| putative phage DNA-binding protein [Clostridium difficile R20291] Length = 280 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 47/132 (35%), Gaps = 2/132 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES-- 68 + + +GK ++ R ++Q +L E GI+ + YE L +++ L+ Sbjct: 25 IILQIGKNLKKIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIEK 84 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 I +F + + ++ + + + + + L+ S Sbjct: 85 TIFYFDIENEVMTNEDVLYFLQSLFPEEYYSFDEFLNAISNLMEDDDIRITSSLLLGAWS 144 Query: 129 SEKKYRTIEEEC 140 + +Y + E+ Sbjct: 145 DKDQYYKLGEKL 156 >gi|257066290|ref|YP_003152546.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256798170|gb|ACV28825.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 206 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R M QE L + LGI + YE+ LQ ++ + Sbjct: 1 MSLGAKLKQLREEQEMKQETLAQILGINRATISMYERNQRVPSTEILQKYTKTFNVSSDY 60 Query: 73 FFDVSPTVCSDISSEE 88 + ++I++E+ Sbjct: 61 LLGNTHYKSNNINNEK 76 >gi|227485487|ref|ZP_03915803.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236486|gb|EEI86501.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 70 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + R G +Q +LG +G++ Q + E+G + I++VL I+ Sbjct: 1 MELRNNLADFRKKAGYNQAELGGLVGVSRQTISLIERGDYNPSVTVALTIAKVLGVDINE 60 Query: 73 FFDVSPTVCS 82 F + T Sbjct: 61 IFRLEETDEK 70 >gi|187729871|ref|YP_001853765.1| transcriptional regulator XRE family [Vibrio tapetis] gi|182894430|gb|ACB99595.1| RstR RS2 element transcriptional regulator [Vibrio tapetis] Length = 132 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 5/99 (5%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R+ G +QE++ + + + Q K+E G A+++Q ++E L + Sbjct: 7 IKSARVERGYTQEQIAKLVKVAKQTYLKWENGETEPKATQIQLLAENLGLTANEICSGKR 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYF--IQIDDVKV 115 T + E+ +++ +L I D +V Sbjct: 67 TTKMSL---EDFIVETAINKWPSELVTMMTWKMIPDHEV 102 >gi|166033610|ref|ZP_02236439.1| hypothetical protein DORFOR_03336 [Dorea formicigenerans ATCC 27755] gi|210608449|ref|ZP_03287825.1| hypothetical protein CLONEX_00004 [Clostridium nexile DSM 1787] gi|317500066|ref|ZP_07958301.1| hypothetical protein HMPREF1026_00243 [Lachnospiraceae bacterium 8_1_57FAA] gi|166026795|gb|EDR45552.1| hypothetical protein DORFOR_03336 [Dorea formicigenerans ATCC 27755] gi|210153068|gb|EEA84074.1| hypothetical protein CLONEX_00004 [Clostridium nexile DSM 1787] gi|316898551|gb|EFV20587.1| hypothetical protein HMPREF1026_00243 [Lachnospiraceae bacterium 8_1_57FAA] Length = 211 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL+ + Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNEL 69 Query: 74 FDVS 77 Sbjct: 70 LSGE 73 >gi|149180249|ref|ZP_01858754.1| transcriptional regulator, XRE family protein [Bacillus sp. SG-1] gi|148852441|gb|EDL66586.1| transcriptional regulator, XRE family protein [Bacillus sp. SG-1] Length = 106 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 25/73 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IR R G+SQE+L G + E G + + ++ L S Sbjct: 29 GKVIRAHRKYKGLSQEELAHRSGFHHNHLNNIELGKAGMSHHTVFKVAAGLNVTPSQLLK 88 Query: 76 VSPTVCSDISSEE 88 + E+ Sbjct: 89 EIEEDVFPLYKED 101 >gi|126726075|ref|ZP_01741917.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126705279|gb|EBA04370.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 191 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 31/70 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G + L LG + + + E+ ++ L+ ++ L P+S FF Sbjct: 12 LGADLRALRKARGWTLSDLAGELGRSVGWLSQIERDLSEPSIGDLREMAAELNVPVSLFF 71 Query: 75 DVSPTVCSDI 84 + T ++ Sbjct: 72 GQAETPAAET 81 >gi|160898026|ref|YP_001563608.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160898060|ref|YP_001563642.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160363610|gb|ABX35223.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] gi|160363644|gb|ABX35257.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 110 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 42/110 (38%), Gaps = 12/110 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G+R+R R+ L ++Q + + ++ + +EKG A+ L ++ L + + Sbjct: 8 HIGERLRQERLRLDVAQLAMADACDVSRGTLATWEKGEQSPNAAALAVMA-GLGVDVLYV 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 S + + +L + + D R I+ + Sbjct: 67 VTGQHANASVQTLAPDE----------RELLDCYGR-ADDSGRAAIMAVA 105 >gi|325662296|ref|ZP_08150908.1| hypothetical protein HMPREF0490_01646 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471422|gb|EGC74644.1| hypothetical protein HMPREF0490_01646 [Lachnospiraceae bacterium 4_1_37FAA] Length = 110 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 42/116 (36%), Gaps = 12/116 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+G ++ R +Q+++ E GI + + YE V + ++ + + Sbjct: 2 KNIGLTLKNARENKDYTQKRVMELTGINRKSLSGYENNVAEPDLNTFATLARLYDLSADE 61 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 ++ P + ++ F + + + R+ +++L ++ Sbjct: 62 VLEIKPG-----------HASLSLSRLETRMLLVFHSLSEERQREFLVQL-EALSK 105 >gi|315167709|gb|EFU11726.1| transcriptional activator, Rgg/GadR/MutR family protein [Enterococcus faecalis TX1341] Length = 289 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK++++ R G++Q ++ + + ++ K EKG +++ A L I + + + FF Sbjct: 4 IGKQLKIERKNRGLTQSEMCQPI-LSTSYYAKVEKGYHKIAAEDLLSILKQNKIDVIDFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S E + S Q ++ Sbjct: 63 ISLEKKGATDISYEQLIHLAWSEAHLKQDIPKLHRLK 99 >gi|294789385|ref|ZP_06754623.1| putative toxin-antitoxin system, antitoxin component, Xre family [Simonsiella muelleri ATCC 29453] gi|294482810|gb|EFG30499.1| putative toxin-antitoxin system, antitoxin component, Xre family [Simonsiella muelleri ATCC 29453] Length = 199 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 33/70 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK IR R + M+ +++ L ++ + E G A + +SE+ E +S+ Sbjct: 15 MILGKNIRKAREEMNMNLQEVSTHLRYPKSKLSEIENGKKIPNAVLMGQLSELFEVSVSY 74 Query: 73 FFDVSPTVCS 82 F+ + T Sbjct: 75 FYTGNETDVG 84 >gi|255292005|dbj|BAH90488.1| XRE family transcriptional regulator [uncultured bacterium] gi|255292866|dbj|BAH89966.1| transcriptional regulator [uncultured bacterium] gi|255292956|dbj|BAH90054.1| XRE family transcriptional regulator [uncultured bacterium] gi|255293226|dbj|BAH90316.1| XRE family transcriptional regulator [uncultured bacterium] Length = 96 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 29/71 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R+ G+SQE L GI + K E+G + + + I+ L+ + Sbjct: 26 GAAVRALRIERGISQESLAHLAGIERSHMGKVERGEHMPTLAVIFKIARALDCSTAVLMA 85 Query: 76 VSPTVCSDISS 86 + + + Sbjct: 86 ETENQIAASET 96 >gi|227533383|ref|ZP_03963432.1| xre family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188949|gb|EEI69016.1| xre family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 202 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 27/73 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++ R+ M+Q L E L ++ V +E N + I+ + E + Sbjct: 5 KQLHQIRLAHQMTQVNLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDTLILD 64 Query: 77 SPTVCSDISSEEN 89 P + + + Sbjct: 65 DPKLNEKLIQDSK 77 >gi|226324115|ref|ZP_03799633.1| hypothetical protein COPCOM_01893 [Coprococcus comes ATCC 27758] gi|225207664|gb|EEG90018.1| hypothetical protein COPCOM_01893 [Coprococcus comes ATCC 27758] Length = 233 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD VG+ IR RM M+ ++L L + V KYEKG + S +S++ + Sbjct: 3 VDEKVGRNIRKYRMAYNMTLKELAVRLHKSVSTVSKYEKGDISLDISTFLELSKIFKVSP 62 Query: 71 SFFFDVS 77 Sbjct: 63 LAIIGDE 69 >gi|225574749|ref|ZP_03783359.1| hypothetical protein RUMHYD_02826 [Blautia hydrogenotrophica DSM 10507] gi|225038040|gb|EEG48286.1| hypothetical protein RUMHYD_02826 [Blautia hydrogenotrophica DSM 10507] Length = 132 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 10/112 (8%), Positives = 40/112 (35%), Gaps = 1/112 (0%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP-T 79 G++ ++ + GI+ +++ N + + + I++ + + Sbjct: 13 KLLQKFGVTTYQVSKATGISQSTFSNWKQRRNLISGDKAKIIADYFGVTVDYLMKGEDTE 72 Query: 80 VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 ++ E V I L++ + + + + +++ ++ E+ Sbjct: 73 TKYYLNEETAKVAQEIFENKELRVLFDAARDANPEDLRTTYDMLMALKRKEQ 124 >gi|225575526|ref|ZP_03784136.1| hypothetical protein RUMHYD_03618 [Blautia hydrogenotrophica DSM 10507] gi|225037276|gb|EEG47522.1| hypothetical protein RUMHYD_03618 [Blautia hydrogenotrophica DSM 10507] Length = 124 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 2/103 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R++ R+ G+SQ +LGE + GIT Q + +YEK N ++ I++ L+ P Sbjct: 4 GERVKELRLKKGLSQRELGERMGGITQQTIAQYEKSENYPKLETIRRIAKALDVPFDNLV 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + I ++ + + IS L++ Q++D +++ Sbjct: 64 PFDDGLRLWIKEKKQSTQNNISGKR-KALDKKIDQLNDDGIQK 105 >gi|197120409|ref|YP_002140836.1| helix-turn-helix domain-containing protein [Geobacter bemidjiensis Bem] gi|197089769|gb|ACH41040.1| helix-turn-helix domain protein [Geobacter bemidjiensis Bem] Length = 307 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 5/103 (4%) Query: 1 MVGNKKIPNPVD---INV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VG 55 M+ + + + + G RIR R ++Q + +G+T + ++E + Sbjct: 1 MMDANDRADKLSAASVAIDGVRIRTVREAKRLTQLYVANVVGVTTDTISRWENNRYPSIK 60 Query: 56 ASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 Q +++ LE P+ V D E T Sbjct: 61 RENAQKLADALEVPLGDILRDEAPVPEDEPGTEFPPPSPRRTK 103 >gi|158314387|ref|YP_001506895.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158109792|gb|ABW11989.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 176 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 36/125 (28%), Gaps = 2/125 (1%) Query: 14 NVGKRIRLRRMILG--MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R G + Q ++ + YE+G + RL +++ P+ Sbjct: 13 EVGARLRAIRTQQGRSLQQVEISSDGRWKVAALGSYERGDRMISIERLAALADFYGVPVH 72 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + + R++ R + E Sbjct: 73 ELLAGGRPNPLPPQAARVVLNLPALARVPADDAGPLRRWVAEIQRERDDYAGRVLSIREG 132 Query: 132 KYRTI 136 RT+ Sbjct: 133 DLRTL 137 >gi|288870099|ref|ZP_06112925.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288868454|gb|EFD00753.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 67 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 27/56 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 IR R G+SQE+L + G++ Q + E + H+++ L++ + F Sbjct: 9 IRSMRKQQGLSQEELAKKCGVSRQTINAIENNKYDPTLALAFHLAKELQTTVDNLF 64 >gi|262377548|ref|ZP_06070770.1| RtrR protein [Acinetobacter lwoffii SH145] gi|262307604|gb|EEY88745.1| RtrR protein [Acinetobacter lwoffii SH145] Length = 70 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + +G IR R+ ++QEKL I V + E+G + +L I+++L+ Sbjct: 2 NDLAQKIGHAIRNCRIEQKITQEKLALLCNIDRSYVGRIERGEVNITVLKLYEIAQILKV 61 Query: 69 PISFFF 74 Sbjct: 62 APHDLL 67 >gi|229009876|ref|ZP_04167096.1| hypothetical protein bmyco0001_3460 [Bacillus mycoides DSM 2048] gi|228751494|gb|EEM01300.1| hypothetical protein bmyco0001_3460 [Bacillus mycoides DSM 2048] Length = 83 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 22 NQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|182625932|ref|ZP_02953697.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] gi|177908845|gb|EDT71343.1| DNA-binding protein [Clostridium perfringens D str. JGS1721] Length = 348 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 11/142 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ +R G++QE++ LG++ V K+EKG + L ++ +L+ ++ Sbjct: 1 MRINEIIKEKRNSQGLTQEQVAMYLGVSTPAVNKWEKGTCYPDITLLPALARLLKVDLNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN--RYFIQIDDVKVRQKIIELVRSI---- 126 + N + I+ DG + + +I + K+I V ++ Sbjct: 61 LLSFKEDLSEQEIGVFVNDLVKIANNDGFHVAFEKAMDKIYEYPTCDKLILTVSTVMQGS 120 Query: 127 -----VSSEKKYRTIEEECMVE 143 ++KY EE ++ Sbjct: 121 IYMFGADDKEKYENQIEEFYIK 142 >gi|251796863|ref|YP_003011594.1| XRE family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247544489|gb|ACT01508.1| transcriptional regulator, XRE family [Paenibacillus sp. JDR-2] Length = 68 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 21/65 (32%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G++QE+L L ++ Q + E G I+ I F Sbjct: 3 NRLEEHRKQHGINQEELAAALEVSRQTIGSLENGRYNPSILLAFRIARFFGKSIEEVFIY 62 Query: 77 SPTVC 81 Sbjct: 63 EEDGT 67 >gi|55419793|gb|AAV51967.1| PlcR [Bacillus thuringiensis] Length = 287 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 45/105 (42%), Gaps = 3/105 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSDNV-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +V + + + +S Q + + + ++K Sbjct: 65 EVLIYSDIERKKLFKDRIQMLSKKK--QYAEIYSIVSNELKKEKF 107 >gi|28631122|gb|AAO49680.1| Eag0009 [Haemophilus influenzae] gi|301169931|emb|CBW29535.1| unnamed protein product [Haemophilus influenzae 10810] Length = 130 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 20/129 (15%), Positives = 49/129 (37%), Gaps = 5/129 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V +IR+ R I SQE++ E L ++ K E+G + + +LQ I+ V + Sbjct: 1 MEVHDKIRVMREINQWSQEEMAEKLSMSPNGYAKIERGQSSINLDKLQQIANVFNIDMGE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 +N+ S ++ + + ++ + ++++ + Sbjct: 61 LITCKDRSIFFAVGGDNSYNLTNSHFGTNEVLTA-----ENEKLNSLLTMKDTLLAQKDD 115 Query: 133 YRTIEEECM 141 +E + Sbjct: 116 EIKALKEII 124 >gi|332296861|ref|YP_004438783.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332179964|gb|AEE15652.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 114 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 48/108 (44%), Gaps = 1/108 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DI + + ++ R G+SQEKL + ++ V + E + + ++ VL + Sbjct: 7 DIFI-RNLKFYRKRQGLSQEKLSYAIDMSMNYVNQLENKNSFPPPEIIDKMAAVLNVKPA 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 FFD + + + I++ + + ++ ++ +I + +K+ Sbjct: 66 QFFDENESPENIIAANKEEFVRELTEQIHSRMKNDIRKIISETIGEKL 113 >gi|327380975|gb|AEA52451.1| Transcriptional regulator [Lactobacillus casei LC2W] Length = 205 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 27/73 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++ RM M+Q L E L ++ V +E N + I+ + E + Sbjct: 8 KQLHQIRMAHQMTQVNLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDTLILD 67 Query: 77 SPTVCSDISSEEN 89 P + + + Sbjct: 68 DPKLNEKLIHDSK 80 >gi|323650445|gb|ADX97299.1| C.ClaIP [Caryophanon latum] Length = 101 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 31/73 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 GK I+ R ++Q++LG + + E+G V S ++ I++ L+ ++ Sbjct: 25 KAFGKNIKRLRQQQELTQDRLGYLAELDRSYIGGIERGERNVCLSNIKRIADALKVSVND 84 Query: 73 FFDVSPTVCSDIS 85 F+ + Sbjct: 85 LFNFKEATTYEEL 97 >gi|331659971|ref|ZP_08360909.1| transcriptional regulator, HTH_3 family [Escherichia coli TA206] gi|315296978|gb|EFU56258.1| helix-turn-helix protein [Escherichia coli MS 16-3] gi|331053186|gb|EGI25219.1| transcriptional regulator, HTH_3 family [Escherichia coli TA206] Length = 370 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR--VGASRLQHISEVLESPISFFF 74 +R+R+ R G++Q L E +T + + YEK + + ++ IS VL PI FF Sbjct: 5 ERLRIARERRGLTQRALAEATELTSKTISNYEKAGIFDAIASDTMERISAVLGYPIEFFL 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 D S + + + L Sbjct: 65 DRDVPTLSPEAVSFRAMTKLTAQKRDSAL 93 >gi|306821372|ref|ZP_07454980.1| XRE family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550590|gb|EFM38573.1| XRE family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 135 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 1/73 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFFF 74 GK+++ R ++Q +L + LGIT + V YE R + ++ + I++ Sbjct: 4 GKKLKALREDKNLTQSELAKILGITLKTVSNYETKDMRPRKMEMYEKMANFFDVNINYLL 63 Query: 75 DVSPTVCSDISSE 87 + Sbjct: 64 TEEDYFIMQAGED 76 >gi|257879451|ref|ZP_05659104.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|323142576|ref|ZP_08077392.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|332655057|ref|ZP_08420798.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] gi|257813679|gb|EEV42437.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|322413009|gb|EFY03912.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|332515917|gb|EGJ45526.1| toxin-antitoxin system, antitoxin component, Xre family [Ruminococcaceae bacterium D16] Length = 149 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 37/73 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I+ R+ + +SQ +L + GI+ + + YE+ S ++ ++E L +S+ D Sbjct: 4 GEKIKEARLAMNLSQTELAQMTGISERSLYTYEQLGTLPRKSNIRKLAEALHISVSYLLD 63 Query: 76 VSPTVCSDISSEE 88 S T ++ Sbjct: 64 ESETDSQSHIDQD 76 >gi|225017527|ref|ZP_03706719.1| hypothetical protein CLOSTMETH_01454 [Clostridium methylpentosum DSM 5476] gi|224949677|gb|EEG30886.1| hypothetical protein CLOSTMETH_01454 [Clostridium methylpentosum DSM 5476] Length = 83 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RIR R ++Q +L L ++ Q YE+GV + L + + + + Sbjct: 4 NRIRDLREDHDLTQAELARMLSVSRQAYSGYERGVRSIPFEILCQFALFYGTSLDYL 60 >gi|254449819|ref|ZP_05063256.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] gi|198264225|gb|EDY88495.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] Length = 130 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 4/118 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + G R+ R G+ + L E LG+ + V+ +E+ + A+R+Q ++ +L Sbjct: 13 NEANATFGDRLAAARQAKGLDVDGLSEKLGVDVETVKVWERDADMPHANRIQMLAGLLNV 72 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + S+++ + + D L V +K+ +L + Sbjct: 73 SMVWLVSGEGNGTSEVA---DTFERPVGVNDALGEISQLKATLSGAV-EKLDKLQERL 126 >gi|116515960|ref|YP_816408.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|148988506|ref|ZP_01819953.1| transcriptional regulator, putative [Streptococcus pneumoniae SP6-BS73] gi|168491942|ref|ZP_02716085.1| helix-turn-helix domain protein [Streptococcus pneumoniae CDC0288-04] gi|225858871|ref|YP_002740381.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585] gi|289167945|ref|YP_003446214.1| transcriptional regulator [Streptococcus mitis B6] gi|116076536|gb|ABJ54256.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|147926187|gb|EDK77261.1| transcriptional regulator, putative [Streptococcus pneumoniae SP6-BS73] gi|183217352|gb|ACC59271.1| antitoxin PezA [Streptococcus pneumoniae] gi|183573821|gb|EDT94349.1| helix-turn-helix domain protein [Streptococcus pneumoniae CDC0288-04] gi|213031122|emb|CAR31459.1| hypothetical protein [Streptococcus pneumoniae] gi|225721666|gb|ACO17520.1| helix-turn-helix domain protein [Streptococcus pneumoniae 70585] gi|288907512|emb|CBJ22349.1| transcriptional regulator [Streptococcus mitis B6] gi|319412015|emb|CBY91948.1| hypothetical protein [Streptococcus pneumoniae] Length = 158 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|160880248|ref|YP_001559216.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428914|gb|ABX42477.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 380 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 11/108 (10%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + I R G++Q++L LG+T V K+E + L I+ I Sbjct: 7 ENIITFRRKKGITQDELATFLGVTKASVSKWETKQSYPDILLLPQIASYFNVSIDELLGY 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P + + L F ++ +V EL++ Sbjct: 67 EPQLSEEQIK-----------KCYQDLATDFAKLPFDEVIAHSRELIK 103 >gi|13095808|ref|NP_076698.1| repressor [Lactococcus phage bIL309] gi|15672420|ref|NP_266594.1| prophage pi1 protein 03 [Lactococcus lactis subsp. lactis Il1403] gi|12723316|gb|AAK04536.1|AE006281_2 prophage pi1 protein 03, transcriptional regulator [Lactococcus lactis subsp. lactis Il1403] gi|12830997|gb|AAK08351.1|AF323670_3 repressor [Lactococcus phage bIL309] Length = 278 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 8/117 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++P +D R G + ++ GE LG + + K+ KGV Sbjct: 1 MKKIRLPEMID--------YFRKENGWTMKEFGEKLGKSESAISKWIKGVRSPMVEDFDK 52 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + + + + + + +S + LN Q+D+ +K Sbjct: 53 MVNLFNTDPDTLMYGASDLSTTLSEINKISSQLEEPRQKVVLNTATNQLDEQNQEKK 109 >gi|329728856|gb|EGG65277.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21193] Length = 62 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R I ++QE+L E ++ + + E +I EVL + S Sbjct: 1 MNIGNKIKNLRRIKNLTQEELAERTDLSKGYISQIESEHASPSMETFLNIIEVLGTTPSE 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|319761962|ref|YP_004125899.1| peptidase s24/s26a/s26b, conserved region protein [Alicycliphilus denitrificans BC] gi|317116523|gb|ADU99011.1| Peptidase S24/S26A/S26B, conserved region protein [Alicycliphilus denitrificans BC] Length = 238 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 8/110 (7%) Query: 2 VGNKKIPNP-----VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 + KK + + + +G+R++ R LG+ G + +E G + Sbjct: 1 MTTKKDKSTAENERITLQIGQRLKEERKRLGLKATDFESHGGWPASTIYGWESGKASPKS 60 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + + L + + T D S L L Sbjct: 61 EFYANT-QELGLDLQYIITGRRTAGLPSGPAPAPAGD--SDSISLPLLSA 107 >gi|309774998|ref|ZP_07670014.1| transcriptional regulator, PbsX family [Erysipelotrichaceae bacterium 3_1_53] gi|319936258|ref|ZP_08010677.1| hypothetical protein HMPREF9488_01509 [Coprobacillus sp. 29_1] gi|325262574|ref|ZP_08129311.1| transcriptional regulator, PbsX family [Clostridium sp. D5] gi|308917252|gb|EFP62976.1| transcriptional regulator, PbsX family [Erysipelotrichaceae bacterium 3_1_53] gi|319808690|gb|EFW05232.1| hypothetical protein HMPREF9488_01509 [Coprobacillus sp. 29_1] gi|324032406|gb|EGB93684.1| transcriptional regulator, PbsX family [Clostridium sp. D5] Length = 211 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL+ + Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNEL 69 Query: 74 FDVS 77 Sbjct: 70 LSGE 73 >gi|288561200|ref|YP_003424686.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288543910|gb|ADC47794.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 108 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ V K ++ R G +QE++ + LGIT + K E G + L + + Sbjct: 2 IDV-VAKNLKDLRKKNGYTQEQVSDYLGITQSNLSKIENGERNFNMTLLDKLCLLYNCSP 60 Query: 71 SFFFDVSP 78 + + Sbjct: 61 EYLIGETD 68 >gi|229549206|ref|ZP_04437931.1| XRE family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|307270616|ref|ZP_07551907.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307276916|ref|ZP_07558026.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307287508|ref|ZP_07567551.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|229305443|gb|EEN71439.1| XRE family transcriptional regulator [Enterococcus faecalis ATCC 29200] gi|306501246|gb|EFM70549.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306506339|gb|EFM75499.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306512926|gb|EFM81567.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|315025553|gb|EFT37485.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315032799|gb|EFT44731.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315035182|gb|EFT47114.1| helix-turn-helix protein [Enterococcus faecalis TX0027] gi|315143802|gb|EFT87818.1| helix-turn-helix protein [Enterococcus faecalis TX2141] gi|315159317|gb|EFU03334.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315162169|gb|EFU06186.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315164906|gb|EFU08923.1| helix-turn-helix protein [Enterococcus faecalis TX1302] gi|315168790|gb|EFU12807.1| helix-turn-helix protein [Enterococcus faecalis TX1341] gi|329577382|gb|EGG58837.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 231 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 +RR LG++Q ++ E L +T Q + +E + L +S + E + T+ Sbjct: 1 MRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRLLKEDNTM 60 Query: 81 CSDISSEENN 90 +S + Sbjct: 61 VEKLSKDIRE 70 >gi|228942196|ref|ZP_04104736.1| hypothetical protein bthur0008_48270 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975125|ref|ZP_04135684.1| hypothetical protein bthur0003_48730 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981764|ref|ZP_04142059.1| hypothetical protein bthur0002_49230 [Bacillus thuringiensis Bt407] gi|228777876|gb|EEM26148.1| hypothetical protein bthur0002_49230 [Bacillus thuringiensis Bt407] gi|228784646|gb|EEM32666.1| hypothetical protein bthur0003_48730 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817530|gb|EEM63615.1| hypothetical protein bthur0008_48270 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 79 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKVIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVE 65 Query: 72 FFFDV 76 F + Sbjct: 66 EIFTL 70 >gi|229144395|ref|ZP_04272800.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228639026|gb|EEK95451.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] Length = 404 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 50/130 (38%), Gaps = 2/130 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I++ LE SF Sbjct: 4 LGEKIKTLRKEKKLTQTDL-AGSELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + ++ + ++ + ++ +Q + L + V++ K + Sbjct: 63 EDDDVEIVELIQQTEKLIKANKYDEVYEVLLPIVQKELPPTLNT-ARLYKQFVTAAAKMK 121 Query: 135 TIEEECMVEQ 144 E VE+ Sbjct: 122 DYNIEYYVEK 131 >gi|295836564|ref|ZP_06823497.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|197697308|gb|EDY44241.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 156 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 10/79 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLG---------ITFQQVQKYEKGVNRVGASRLQHIS 63 +N+G+RIR RR+ LG SQE+L + Q++ +YE G L I+ Sbjct: 1 MNIGERIRDRRLQLGWSQERLAREACRVAGAGPEKLGRQEIYRYETGRRTPR-DWLAPIA 59 Query: 64 EVLESPISFFFDVSPTVCS 82 + L + P S Sbjct: 60 QALGLSVQALSGGQPDADS 78 >gi|167045593|gb|ABZ10243.1| putative helix-turn-helix motif protein [uncultured marine crenarchaeote HF4000_APKG10I20] Length = 159 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 10/136 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK + V +G R+R R L + +L + + I+ + E + A + Sbjct: 23 MQEKK--SGVAKFLGSRLRQWRKSLPLKSFELAKLIKISQGSLSDIENNKSLPSADTIAK 80 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + + + I + + + P + + +D + + I Sbjct: 81 LYQHTDLNIIWLLTGRGPIKKTQQAPGGE------EPCVNEAMETYG--EDPTLNELIQR 132 Query: 122 LVRSIVSSEKKYRTIE 137 LVR+ S + + + Sbjct: 133 LVRTYYSGDAEKKAHL 148 >gi|187777637|ref|ZP_02994110.1| hypothetical protein CLOSPO_01229 [Clostridium sporogenes ATCC 15579] gi|187774565|gb|EDU38367.1| hypothetical protein CLOSPO_01229 [Clostridium sporogenes ATCC 15579] Length = 78 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 2/69 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI+ R + G++QE+LG+ +G++ Q + E I ++ I F F Sbjct: 3 NRIKEFREVFGLTQEQLGKLVGVSRQAINAIETEKFEPSIWLAYDICKIFHRSIEEVFLF 62 Query: 75 DVSPTVCSD 83 + S Sbjct: 63 EESERKSRG 71 >gi|169349646|ref|ZP_02866584.1| hypothetical protein CLOSPI_00384 [Clostridium spiroforme DSM 1552] gi|169293721|gb|EDS75854.1| hypothetical protein CLOSPI_00384 [Clostridium spiroforme DSM 1552] Length = 211 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 32/64 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL+ + Sbjct: 10 HLGNNIQTIRKFRGMKQQELADKIGINMQSLSKIERGLNYPAYETLEKIMEVLDVTPNEL 69 Query: 74 FDVS 77 Sbjct: 70 LSGE 73 >gi|209551999|ref|YP_002283915.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539592|gb|ACI59523.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 466 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 23/128 (17%), Positives = 50/128 (39%), Gaps = 1/128 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK++R R++ +Q + E LGI+ + + E V A+ L + + + +S Sbjct: 6 LFIGKKVRELRLLHKANQSQFAERLGISTSYLNQIESNQRPVSAAVLLALVDKFQLDMSD 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 SE F Q + +Q + V +I+ ++ ++ Sbjct: 66 LATGEIDRLLSAFSEALTDPLFEGYAPSFQELKLVVQ-NAPGVAHALIKAHQAYRRVSEQ 124 Query: 133 YRTIEEEC 140 +I+ E Sbjct: 125 LASIDREL 132 >gi|159039188|ref|YP_001538441.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157918023|gb|ABV99450.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 196 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 23/69 (33%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+R R + +L G++ + + E G R L ++ + Sbjct: 11 AVGPRLRALRRQRETTLTELSANTGVSVSTLSRLESGARRPTLELLLPLARAYGVTLDEL 70 Query: 74 FDVSPTVCS 82 PT Sbjct: 71 VGAPPTGDP 79 >gi|148994210|ref|ZP_01823503.1| transcriptional regulator, putative [Streptococcus pneumoniae SP9-BS68] gi|147927351|gb|EDK78382.1| transcriptional regulator, putative [Streptococcus pneumoniae SP9-BS68] Length = 158 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|82703914|ref|YP_413478.1| helix-hairpin-helix DNA-binding motif-containing protein [Nitrosospira multiformis ATCC 25196] gi|82411979|gb|ABB76086.1| transcriptional regulator, XRE family [Nitrosospira multiformis ATCC 25196] Length = 106 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 3/102 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++IR R L ++ E+L E G + + + V R A ++ ISEV P+ F Sbjct: 5 LGEKIRTERKRLKLTLEELAEKTGSSKSYIWELENRPVVRPSAEKISKISEVFGVPVEFL 64 Query: 74 FDVSPTVCSDISSEENNVMDF--ISTPDGLQLNRYFIQIDDV 113 D + + +++ + QL ++ IDD Sbjct: 65 LDDAKHELTPSDADQVFFRRITQLDPAKRAQLEKFLKAIDDE 106 >gi|58699926|ref|ZP_00374515.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] gi|58533557|gb|EAL57967.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila ananassae] Length = 293 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 55/138 (39%), Gaps = 23/138 (16%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + +G+RIR R+I +Q+ L + +G+T +++ +YE+G + +L Sbjct: 170 TEREICTDSIYYRIGQRIREWRLIRRYTQKDLADKVGVTLKEIHEYERGYTTILFDKLYE 229 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L I P+ + + I++ + + + Sbjct: 230 IAGALSVNIKVLL-----------------------PETRESKKLLSLINEYREPESLDA 266 Query: 122 LVRSIVSSEKKYRTIEEE 139 LV+S+ K + ++ Sbjct: 267 LVKSLSEDMKSGKEKVKK 284 Score = 39.4 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 48/124 (38%), Gaps = 12/124 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R++ G +Q +L +G+T+Q+V YE G + L I+ VL Sbjct: 29 IGQKIEDSRLMRGHTQVELASEIGLTYQEVNSYENGYIPIPIEVLYVIARVLSVNAIDLL 88 Query: 75 DV---------SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 ++ N P ++ +I+ + R +E+ ++ Sbjct: 89 PEPVIVREDSYEDEEILYLTKIYENQKLGKIVPSLVRFVHISEKINQEEAR---LEIAKN 145 Query: 126 IVSS 129 +V Sbjct: 146 LVKE 149 >gi|332362047|gb|EGJ39849.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 158 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 32/95 (33%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R ++Q + +GI+ + +YE G++ + + I + Sbjct: 1 MIGDNIKSLRKTNELTQPEFARIVGISRNSLSRYENGISPISTELIDTICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L R + Sbjct: 61 VGEEKMLNPVEDYELTLKIEIVKERGTNLLARLYR 95 >gi|327441857|dbj|BAK18222.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 368 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 11/105 (10%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 RR L ++QE++ +G++ V K+EKG + + L ++ I P + Sbjct: 12 ERRKQLQVTQEEIARHVGVSRAAVSKWEKGQSYPDIALLPKLATFFNISIDALLGYEPQL 71 Query: 81 CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 ++ +L + F + +V I +L+ Sbjct: 72 TNERIL-----------KMYAELAKRFSKEPFAEVDVTIDQLIEE 105 >gi|325688546|gb|EGD30563.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK72] Length = 170 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 13/133 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + F Sbjct: 9 GPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLFG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-----DVKVRQKIIELVRSIVSSE 130 S + + S E+N + ++ + I+ D + + ++ L + Sbjct: 69 TSKEIELEKSVLESNEY----SDKVSEILKAVKYIEHFLHTDGQHLEDLLYLTK----GN 120 Query: 131 KKYRTIEEECMVE 143 + Y EE ++ Sbjct: 121 QLYTEDGEELYID 133 >gi|320332978|ref|YP_004169689.1| XRE family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754267|gb|ADV66024.1| transcriptional regulator, XRE family [Deinococcus maricopensis DSM 21211] Length = 73 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V IR R G +Q L E L ++ Q + E G IS + + I Sbjct: 5 AVNNHIRALRKQRGWTQSDLAEQLDVSRQTINAIETGKYDPSLPLAFRISLLFAARIEDI 64 Query: 74 F 74 F Sbjct: 65 F 65 >gi|312953700|ref|ZP_07772536.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310628374|gb|EFQ11657.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|315151831|gb|EFT95847.1| helix-turn-helix protein [Enterococcus faecalis TX0031] Length = 231 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 +RR LG++Q ++ E L +T Q + +E + L +S + E + T+ Sbjct: 1 MRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSNLYEMTLDRLLKEDNTM 60 Query: 81 CSDISSEENN 90 +S + Sbjct: 61 VEKLSKDIKE 70 >gi|332850659|ref|ZP_08432906.1| peptidase S24-like protein [Acinetobacter baumannii 6013150] gi|332867060|ref|ZP_08437357.1| peptidase S24-like protein [Acinetobacter baumannii 6013113] gi|332730496|gb|EGJ61812.1| peptidase S24-like protein [Acinetobacter baumannii 6013150] gi|332734253|gb|EGJ65382.1| peptidase S24-like protein [Acinetobacter baumannii 6013113] Length = 243 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R LG +Q E G T + YEK + + A L I+E + + + + Sbjct: 29 VTIGARLKEERERLGYTQPVFAELAGTTKKSQIDYEKDLTQPKAGYLAAIAE-VGADVGY 87 Query: 73 FFDVSPTVCSDISS 86 + + S Sbjct: 88 IVTGNKSPQLQNSD 101 >gi|281427992|ref|YP_003354946.1| hypothetical protein LLKF_p0031 [Lactococcus lactis subsp. lactis KF147] gi|281376619|gb|ADA66104.1| hypothetical protein LLKF_p0031 [Lactococcus lactis subsp. lactis KF147] Length = 201 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 1/87 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R G +QE L E IT + +Q+ E G V L IS L P+S F+ Sbjct: 5 RVAELRKKRGWTQEVLAEKANITVRTIQRIENGT-DVSLDTLASISNALLVPVSELFERI 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + + I + Sbjct: 64 DEEAKEVEIMDMSKEQLIQLKYRQTIT 90 >gi|264676235|ref|YP_003276141.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262206747|gb|ACY30845.1| transcriptional regulator, XRE family with [Comamonas testosteroni CNB-2] Length = 300 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 33/74 (44%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G++ +P+ +G+R+R R G+++ L ++ + + E G V LQ I Sbjct: 14 GDEAGKSPLLQALGERVRNLRARRGLTRRGLASAAVVSERHLANLEYGTGNVSILVLQQI 73 Query: 63 SEVLESPISFFFDV 76 + L+ ++ Sbjct: 74 AHALQCSMAELLGD 87 >gi|228943194|ref|ZP_04105662.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975981|ref|ZP_04136501.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979104|ref|ZP_04139452.1| Transcriptional regulator, Xre [Bacillus thuringiensis Bt407] gi|228780630|gb|EEM28849.1| Transcriptional regulator, Xre [Bacillus thuringiensis Bt407] gi|228783738|gb|EEM31797.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816473|gb|EEM62630.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940189|gb|AEA16085.1| XRE family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 292 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ F Sbjct: 6 LGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYIF 64 Query: 75 DVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + D + + +L + + Sbjct: 65 ALTKNKKIKYIENVKCVMRDCVKQKEYNELYEIVKKEKNEN 105 >gi|254383920|ref|ZP_04999267.1| transcriptional regulator [Streptomyces sp. Mg1] gi|194342812|gb|EDX23778.1| transcriptional regulator [Streptomyces sp. Mg1] Length = 76 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 15 VGKRIRLRR-MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RIR+ R M+Q L E +G+T Q V EKG I+ V P+ Sbjct: 6 ITNRIRVLRFEHAEMTQADLAERIGVTRQTVIAIEKGRYSPSLETAFRIARVFAVPLEQV 65 Query: 74 FDVSPTVCSDI 84 F S + Sbjct: 66 FQYSDEEGTAP 76 >gi|325261320|ref|ZP_08128058.1| DNA-binding protein [Clostridium sp. D5] gi|324032774|gb|EGB94051.1| DNA-binding protein [Clostridium sp. D5] Length = 185 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ +R + +S +L + + + E G L+ I + L+ P+ F Sbjct: 6 IGKTIKDKRQDMNLSLRELSAISQVAGSTISQIETGKTSPNLLTLKAICDSLDIPVFSLF 65 Query: 75 DVSPTVCS 82 + Sbjct: 66 LEEDSQVQ 73 >gi|312862452|ref|ZP_07722695.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|319945713|ref|ZP_08019964.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] gi|311102095|gb|EFQ60295.1| DNA-binding helix-turn-helix protein [Streptococcus vestibularis F0396] gi|319748073|gb|EFW00316.1| cro/CI family transcriptional regulator [Streptococcus australis ATCC 700641] gi|328945360|gb|EGG39513.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK1087] gi|332364441|gb|EGJ42213.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK1059] Length = 170 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 4/97 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + F Sbjct: 9 GPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLFG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 S + + S E+N + ++ + I+D Sbjct: 69 TSKEIELEKSVLESNEY----SDKVSEILKAVKYIED 101 >gi|311279673|ref|YP_003941904.1| helix-turn-helix domain-containing protein [Enterobacter cloacae SCF1] gi|308748868|gb|ADO48620.1| helix-turn-helix domain protein [Enterobacter cloacae SCF1] Length = 191 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 36/94 (38%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ +G RIR+ R S +L + G++ + K E+G + A+ L +S Sbjct: 6 DTLNARIGARIRIERESRSWSLSELADRAGVSRTMIHKIERGDSSPTATMLGRLSGAFGI 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 +S + + + + L+ Sbjct: 66 SMSTLIARAEMQEGKLLRFASQPVWRDPQSHYLR 99 >gi|307324211|ref|ZP_07603419.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889942|gb|EFN20920.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 406 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P D ++G RIR R+I S +LG ++ Q+ + E G S L ++ L Sbjct: 1 MPETNDKHIGVRIREFRIIRDFSLAELGRRAHVSTSQLSRVETGEQPASPSVLAAVARAL 60 Query: 67 ESPISFF 73 E +S Sbjct: 61 EVTLSVL 67 >gi|262193892|ref|YP_003265101.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262077239|gb|ACY13208.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 79 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++QE+ E L I + E+G+ S L+ ++ + Sbjct: 9 IGNAVRDGRKAFGLTQEQAAERLDICVDYYGRVERGIAIPSVSMLRRLAVAFGLDGNVLL 68 Query: 75 DVSPTVCSDIS 85 +S + Sbjct: 69 GLSDADLDTSA 79 >gi|300777915|ref|ZP_07087773.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300503425|gb|EFK34565.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 135 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 14/141 (9%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQ 60 + NKK I+ G+ I+ R +LG+ QE L E Q+ + V + L Sbjct: 6 MQNKK------IHQGRNIKRFREMLGIKQEALAFELGDDWNQKKISLLEQKETVESDILA 59 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++++L+ P + +I S N D +G+ + F K++ Sbjct: 60 QVAQILKVPAEAIENFDEEQAVNIISNTFNTHDH---SNGVNVQPTFT----FNPLDKMV 112 Query: 121 ELVRSIVSSEKKYRTIEEECM 141 EL ++ +++ E + Sbjct: 113 ELYERMLEQQREMIEKLERLI 133 >gi|218235687|ref|YP_002367168.1| transcriptional regulator, XRE family [Bacillus cereus B4264] gi|218163644|gb|ACK63636.1| transcriptional regulator, XRE family [Bacillus cereus B4264] Length = 292 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ F Sbjct: 6 LGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYIF 64 Query: 75 DVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + D + + +L + + Sbjct: 65 ALTKNKKIKYIENVKCVMRDCVKQKEYNELYEIVKKEKNEN 105 >gi|206967661|ref|ZP_03228617.1| DNA-binding protein [Bacillus cereus AH1134] gi|218236090|ref|YP_002365489.1| DNA-binding protein [Bacillus cereus B4264] gi|228919545|ref|ZP_04082909.1| Transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228951193|ref|ZP_04113308.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228957113|ref|ZP_04118883.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229042556|ref|ZP_04190299.1| Transcriptional regulator [Bacillus cereus AH676] gi|229068379|ref|ZP_04201682.1| Transcriptional regulator [Bacillus cereus F65185] gi|229078006|ref|ZP_04210615.1| Transcriptional regulator [Bacillus cereus Rock4-2] gi|229149032|ref|ZP_04277277.1| Transcriptional regulator [Bacillus cereus m1550] gi|229177222|ref|ZP_04304609.1| Transcriptional regulator [Bacillus cereus 172560W] gi|229188901|ref|ZP_04315934.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|206736581|gb|EDZ53728.1| DNA-binding protein [Bacillus cereus AH1134] gi|218164047|gb|ACK64039.1| DNA-binding protein [Bacillus cereus B4264] gi|228594606|gb|EEK52392.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228606228|gb|EEK63662.1| Transcriptional regulator [Bacillus cereus 172560W] gi|228634572|gb|EEK91156.1| Transcriptional regulator [Bacillus cereus m1550] gi|228705344|gb|EEL57721.1| Transcriptional regulator [Bacillus cereus Rock4-2] gi|228714840|gb|EEL66712.1| Transcriptional regulator [Bacillus cereus F65185] gi|228726775|gb|EEL77989.1| Transcriptional regulator [Bacillus cereus AH676] gi|228802560|gb|EEM49407.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228808490|gb|EEM54994.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228840188|gb|EEM85465.1| Transcriptional regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 67 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R+ L ++Q++L E +G+T Q + EKG I ++ ++ F Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLFWE 63 Query: 77 SPT 79 Sbjct: 64 EKE 66 >gi|85707435|ref|ZP_01038515.1| probable transcriptional regulator [Roseovarius sp. 217] gi|85668023|gb|EAQ22904.1| probable transcriptional regulator [Roseovarius sp. 217] Length = 373 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 6/106 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGEC--LGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 I G+R+RL R G+S + L E ++ Q + KYE +S L + + L + Sbjct: 14 IMFGQRLRLARKRAGLSMQALAERVTPSVSAQAISKYEADKMMPSSSVLVGLGKALGVSL 73 Query: 71 SFFFDVSPTVCSDIS----SEENNVMDFISTPDGLQLNRYFIQIDD 112 F + S + ++ ++ ++ I+D Sbjct: 74 DFLLGGQVEALESVEWRKNSTASAQDRAMAESIVIEKLEDYLAIED 119 >gi|332362028|gb|EGJ39830.1| transcriptional regulator [Streptococcus sanguinis SK49] Length = 158 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q+ +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHDLTQDDFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGSNLLSRLYR 95 >gi|325288497|ref|YP_004264678.1| phage repressor like transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] gi|324963898|gb|ADY54677.1| phage repressor like transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] Length = 201 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFF 74 G I+ R+ G++QE+LG +G+ V K+E G + S ++ +S + Sbjct: 4 GDLIKQLRLKKGLTQEELGNLIGVKRAAVNKWETGSVENLKRSTIEKLSAIFGVSPIQLL 63 Query: 75 DVSPTVCSDIS 85 ++ D+ Sbjct: 64 GLTEAEPRDVL 74 >gi|309777433|ref|ZP_07672391.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 3_1_53] gi|308914829|gb|EFP60611.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 3_1_53] Length = 83 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++Q +L L + V +E+G+ + + + + E + F Sbjct: 5 IGMMLRELRKKRGLTQAQLAMMLKVDQTAVSMWERGITQPRMRKCIELVAIFECTLDDLF 64 >gi|269976764|ref|ZP_06183739.1| putative transcriptional regulator [Mobiluncus mulieris 28-1] gi|269934961|gb|EEZ91520.1| putative transcriptional regulator [Mobiluncus mulieris 28-1] Length = 69 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +I R +SQE+LG +G+T Q + E G I+ + I FD Sbjct: 4 KIPQLRKERKLSQEELGTAVGVTRQTITSIETGKYVASLPLAYKIAHYFDRTIEDVFD 61 >gi|213031130|emb|CAR31467.1| hypothetical protein [Streptococcus pneumoniae] Length = 158 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|153002790|ref|YP_001368471.1| XRE family transcriptional regulator [Shewanella baltica OS185] gi|151367408|gb|ABS10408.1| transcriptional regulator, XRE family [Shewanella baltica OS185] Length = 510 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A L I+ V Sbjct: 13 FLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAGMLAVIAAVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + +F D P + Sbjct: 73 QKDAEWFLDDVPEESAITPD 92 >gi|89899036|ref|YP_521507.1| anaerobic benzoate catabolism transcriptional regulator [Rhodoferax ferrireducens T118] gi|89343773|gb|ABD67976.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodoferax ferrireducens T118] Length = 324 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 4/104 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP +G+R+R R GM+++ L ++ + + E GV L ++ L+ Sbjct: 39 NPFLAALGERVRALRARRGMTRKALAMVADVSERHLANLEYGVGNASILVLLQVAGALQC 98 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + + S E + + + D L R I I + Sbjct: 99 SLGELIGD----VTTSSPEWLMIRELLEQRDDATLQRVRIAIGE 138 >gi|56708873|ref|YP_164916.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56680558|gb|AAV97223.1| DNA-binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 72 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + V + I+ R +SQE++ I + E G ++ I++ L Sbjct: 5 SIQSRVSRNIQRIRREKDLSQEEVAHRADIHQTYLSGVETGKRNPSILVVERIAKALGVD 64 Query: 70 ISFFF 74 +S F Sbjct: 65 VSEIF 69 >gi|319891788|ref|YP_004148663.1| transcriptional regulator, XRE family [Staphylococcus pseudintermedius HKU10-03] gi|317161484|gb|ADV05027.1| transcriptional regulator, XRE family [Staphylococcus pseudintermedius HKU10-03] Length = 277 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R+ G +QEK GE + V +EKG + RL IS + + Sbjct: 6 EIGARIKKIRINSGKTQEKFGELFSASKGNVAMWEKGASLPNKKRLLQISNMANISLDKL 65 Query: 74 FDVS 77 Sbjct: 66 LYGE 69 >gi|227546152|ref|ZP_03976201.1| hypothetical protein HMPREF0175_0575 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213133|gb|EEI81005.1| hypothetical protein HMPREF0175_0575 [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 86 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 2/79 (2%) Query: 7 IPN-PVDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISE 64 +PN +D + R+ R M+Q++ + + G R+ +S + +I++ Sbjct: 1 MPNRTIDKLMADRVDRLRRQANMTQQRYAAEVLHCSQGTASTKLAGKTRMSSSDVLNIAK 60 Query: 65 VLESPISFFFDVSPTVCSD 83 + + +S + Sbjct: 61 AFNVSTDYIYGLSDSPEPG 79 >gi|222081095|ref|YP_002540458.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725774|gb|ACM28863.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 200 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 28/64 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKR+R R + M+ +++ G++ + K E + ++ L IS Sbjct: 12 MDLGKRVRALRANIDMTIKEVSLRSGMSASAISKIENNQLSPTYENIIKLARGLGVDISE 71 Query: 73 FFDV 76 F Sbjct: 72 LFSD 75 >gi|170721568|ref|YP_001749256.1| XRE family transcriptional regulator [Pseudomonas putida W619] gi|169759571|gb|ACA72887.1| transcriptional regulator, XRE family [Pseudomonas putida W619] Length = 181 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 3/126 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++L R +SQ +L G+T + + E+ S L+ + E + ++ FF Sbjct: 4 GTRLKLVRERNNLSQRELARRSGLTNSTISQIEQNRVSPSVSSLKKLLEGIPMTLAEFFS 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + +GL++ ++ ++R + EL S + Sbjct: 64 F-DEPVREERFVFRASEQPDLGRNGLRMLLVGASVEARQMR-MLRELYAPGADSGEPIVH 121 Query: 136 IE-EEC 140 E EEC Sbjct: 122 AEGEEC 127 >gi|52842273|ref|YP_096072.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629384|gb|AAU28125.1| hypothetical phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 207 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 32/104 (30%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + +G RI+ R + +L E G + Q++ +E+G + + L Sbjct: 10 DIKLKIGLRIKESRKNKKFTAVQLAEVTGFSAQRISNWERGTRTPRFKDAEILGSALGVS 69 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 ++ + + ++ I D Sbjct: 70 PTWLLFLDIDHKPMKDHPFQTIPIINASSKIEGYLPIPSSIQDN 113 >gi|329888188|ref|ZP_08266786.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328846744|gb|EGF96306.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 65 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 29/59 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R++L R+ +QE+LG+ LG++ Q V E + I+ + E P+ F+ Sbjct: 3 NRLKLLRVERNWTQEQLGQALGVSRQAVNALETEKHDPSLDLAYRIAALFERPVEDIFE 61 >gi|297195428|ref|ZP_06912826.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152779|gb|EDY63104.2| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 206 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 35/85 (41%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + +D V KRIR R+ G S E+L ++ + + E G R+ +L Sbjct: 7 MLPMTQDNGELDSLVRKRIRALRVAQGWSLEELAARGRLSQSTLSRIENGHRRLALDQLV 66 Query: 61 HISEVLESPISFFFDVSPTVCSDIS 85 ++ L++ + + + Sbjct: 67 TLARALDTSLDQLVETATDDVVSNP 91 >gi|291518992|emb|CBK74213.1| Predicted transcriptional regulators [Butyrivibrio fibrisolvens 16/4] Length = 116 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 3/119 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R+ + GM+Q++ GI V + K A ++ I +VL + Sbjct: 1 MTISDRVFEKLQEQGMTQKEFSAQTGIPESTVSDWRKKKTNPAADKILIICKVLGVTPEW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + +++ S +L F + + + ++ + + + +K Sbjct: 61 ILSGIDADGGRSKPVDYYIVEKSSEQG--KLIETFNNMA-GRDKTYLLGYIEAFKNMQK 116 >gi|253580260|ref|ZP_04857526.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848353|gb|EES76317.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 70 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 27/64 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I++ R M+Q+ L E +G++ Q + EKG + I VL+ + F Sbjct: 7 IKVARAEKDMTQKVLAEAVGVSRQTINAIEKGEYNPTIKLCRKICRVLDKSLDDLFWEDE 66 Query: 79 TVCS 82 + Sbjct: 67 EDEN 70 >gi|229826250|ref|ZP_04452319.1| hypothetical protein GCWU000182_01622 [Abiotrophia defectiva ATCC 49176] gi|229789120|gb|EEP25234.1| hypothetical protein GCWU000182_01622 [Abiotrophia defectiva ATCC 49176] Length = 220 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 39/96 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K I R +G++Q++L + +G++ + + K+E G + S + + L ++ Sbjct: 6 ISKFIATTRTKIGLTQKELADKIGVSDKTISKWETGKSLPDISYYESLCNALNIKVNELL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + I +G N+ I++ Sbjct: 66 SGEALTEDVYLQKAETNFVEIIRENGFSKNKVIIRL 101 >gi|229176555|ref|ZP_04303981.1| Transcription regulator [Bacillus cereus MM3] gi|228606911|gb|EEK64307.1| Transcription regulator [Bacillus cereus MM3] Length = 118 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 42/122 (34%), Gaps = 11/122 (9%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R SQ++LGE + ++ V K E G + I+EV F S Sbjct: 8 RIKELRKERKWSQKELGEKVDVSESFVSKVESGKKQPSREVTAKIAEVFNVTTDFLLGRS 67 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 + + + + R+ I++ ++++ +K Sbjct: 68 DEADLNEMLDVKFKA-----------MKKRLSNLPESQREMIMKQAENLMAEFEKLNNQS 116 Query: 138 EE 139 E+ Sbjct: 117 EK 118 >gi|254500741|ref|ZP_05112892.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] gi|222436812|gb|EEE43491.1| Helix-turn-helix domain protein [Labrenzia alexandrii DFL-11] Length = 186 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 5/139 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + + +R++ R G+S E + + G++ V + E+G + + L +++ L Sbjct: 4 SDILSRLPERLKKARRAQGLSLEAVEKLSGVSRSMVSQIERGESNPTVATLLNLTRALNV 63 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL-VRSIV 127 + D G + R ++ EL + Sbjct: 64 DFAGLLG--EEAVEDRVEIVKVSQTPALDRAGDGCKIRILSAPQDAGRFEVYELFFKDGG 121 Query: 128 SSEKK--YRTIEEECMVEQ 144 E K R E+ + E+ Sbjct: 122 KLESKPHERGTREQLIAEE 140 >gi|153811873|ref|ZP_01964541.1| hypothetical protein RUMOBE_02266 [Ruminococcus obeum ATCC 29174] gi|149832007|gb|EDM87092.1| hypothetical protein RUMOBE_02266 [Ruminococcus obeum ATCC 29174] Length = 349 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 3/85 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K N N+ K I R +SQE+ E +G+T Q V ++E G++ + L Sbjct: 1 MNRSKDSNQ---NIAKTILKIRQDNKLSQEQFAEIVGVTRQAVSRWEMGISAPNINTLIL 57 Query: 62 ISEVLESPISFFFDVSPTVCSDISS 86 +SE + + + Sbjct: 58 MSEKFNIQVDEMLKSRDVDEKNDNK 82 >gi|94968442|ref|YP_590490.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550492|gb|ABF40416.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 179 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 6/92 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR R G+SQ +L + + V K E S L+ +++ L+ + Sbjct: 65 LQIAQSIRNLRQRAGLSQRQLALRMQVPRTYVSKIENEKATPTLSSLERLAKALQVTLPD 124 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S E V D +S +L Sbjct: 125 LLTG------GQPSREEQVRDLMSDSFLAELM 150 >gi|163942747|ref|YP_001647631.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163864944|gb|ABY46003.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 73 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R+R R +SQ LG+ +G + Q + E+G I+++ +P+ Sbjct: 1 MKLQNRVREFRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFGAPVEE 60 Query: 73 FFDVSPTVCSDI 84 F + D Sbjct: 61 IFTLVEGEDGDE 72 >gi|134298754|ref|YP_001112250.1| XRE family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134051454|gb|ABO49425.1| putative transcriptional regulator, XRE family [Desulfotomaculum reducens MI-1] Length = 210 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 31/81 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R++ R +S + + I + + E G L+ I L ++ Sbjct: 1 MKLGQRLKSMREQQNISMNMVAKRADIAQSTLSRIESGQQMPTFDVLERIITALGLTLAD 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF + + ++ V D Sbjct: 61 FFSEDNKNFTVPDNIKDLVTD 81 >gi|116054262|ref|YP_788706.1| Cro/CI family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|296387039|ref|ZP_06876538.1| Cro/CI family transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313111831|ref|ZP_07797624.1| putative transcriptional regulator, Cro/CI family [Pseudomonas aeruginosa 39016] gi|115589483|gb|ABJ15498.1| putative transcriptional regulator, Cro/CI family [Pseudomonas aeruginosa UCBPP-PA14] gi|310884126|gb|EFQ42720.1| putative transcriptional regulator, Cro/CI family [Pseudomonas aeruginosa 39016] Length = 184 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 34/89 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R R G++ + L + + + V + E+G++R L IS+VL P ++F Sbjct: 10 EIASLVRELRKRKGITLQALADGIRRSVGFVSQVERGLSRPAVDDLVAISQVLGVPATYF 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQ 102 F T S + Sbjct: 70 FCSPKTQASPWVTRPGERRTLAYARGASD 98 >gi|317498577|ref|ZP_07956870.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894064|gb|EFV16253.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 217 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 32/61 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R +G++Q KL E GI ++KYE + +L+ I+ L+ + Sbjct: 1 MTIGEKIRYCREQIGITQGKLAELTGIHPVSIRKYETNKMQPQPPQLEKIAAALDVSYNA 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|317504070|ref|ZP_07962073.1| DNA-binding protein [Prevotella salivae DSM 15606] gi|315664812|gb|EFV04476.1| DNA-binding protein [Prevotella salivae DSM 15606] Length = 184 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R+R R +L + E++ E GIT + K E G RL IS+ + Sbjct: 6 KQIGERLRGLRDVLDIPAEEVAELCGITLEHYLKIEAGEADPSVYRLSKISKRYGISLDV 65 Query: 73 FFDVSPTVCSD 83 S Sbjct: 66 LLFGEEPRMSS 76 >gi|313885531|ref|ZP_07819281.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619261|gb|EFR30700.1| peptidase S24-like protein [Eremococcus coleocola ACS-139-V-Col8] Length = 213 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 37/120 (30%), Gaps = 9/120 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQ-QVQKYEKGVNRVGASRL 59 M N GK ++ R G++Q+++ + +G V +E G A + Sbjct: 1 MNENN--------FFGKNLKYLRNKKGITQQEIADLIGRKSTGSVSDWEAGRTTPNAGNI 52 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 I+ I + + S + P ++ + D + I Sbjct: 53 SKIASYFGLKIDAMVEYDLQTQASAPSNLIPIKQTKLIPVIGRIACGAPILADQNIIDSI 112 >gi|311895251|dbj|BAJ27659.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 111 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 3/103 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R RR LG++ +L LG+ V ++E G SR+ ++ L P Sbjct: 6 RMRDRRKRLGLTLAQLAVPLGVHEATVGRWEGGAVEPSVSRVVALAAALRVPFEALLKPV 65 Query: 78 PTVCSDI--SSEENNVMDFISTPDGL-QLNRYFIQIDDVKVRQ 117 P + ++E + + R F VRQ Sbjct: 66 PASVRRVYSAAEAVRCRQPGAVRGEAGRAARPFPYAGAAAVRQ 108 >gi|258616769|ref|ZP_05714539.1| Cro/CI family transcriptional regulator [Enterococcus faecium DO] gi|293560120|ref|ZP_06676624.1| helix-turn-helix domain protein [Enterococcus faecium E1162] gi|314938184|ref|ZP_07845489.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] gi|314943772|ref|ZP_07850507.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|314951141|ref|ZP_07854199.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|314994621|ref|ZP_07859881.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|314995569|ref|ZP_07860663.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|291605987|gb|EFF35417.1| helix-turn-helix domain protein [Enterococcus faecium E1162] gi|313590157|gb|EFR69002.1| helix-turn-helix protein [Enterococcus faecium TX0133a01] gi|313591026|gb|EFR69871.1| helix-turn-helix protein [Enterococcus faecium TX0133B] gi|313596620|gb|EFR75465.1| helix-turn-helix protein [Enterococcus faecium TX0133A] gi|313597496|gb|EFR76341.1| helix-turn-helix protein [Enterococcus faecium TX0133C] gi|313642531|gb|EFS07111.1| helix-turn-helix protein [Enterococcus faecium TX0133a04] Length = 215 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 4/78 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRL 59 V KK P V+ G+RIRL R+ G+S E+LG L + V +E G N +RL Sbjct: 7 VARKKYPEAVET--GQRIRLARIEKGLSMEQLGGKLSPPASKGAVSNWENGYNLPNNTRL 64 Query: 60 QHISEVLESPISFFFDVS 77 + +S+VL+ ++ + S Sbjct: 65 KQLSKVLDVSTTYLLNGS 82 >gi|305681668|ref|ZP_07404474.1| bacteriophage CI repressor protein [Corynebacterium matruchotii ATCC 14266] gi|305658828|gb|EFM48329.1| bacteriophage CI repressor protein [Corynebacterium matruchotii ATCC 14266] Length = 95 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 28/78 (35%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R G+ Q +L E G++ + V +E G S L I+ + + Sbjct: 18 RIQRARRHAGLEQGQLAELAGVSRKSVSNWEIGKTVPRRSALIAIAFATGVNLYWLETGE 77 Query: 78 PTVCSDISSEENNVMDFI 95 + + + + Sbjct: 78 SPYPPEPVKDAKSGNSMV 95 >gi|291299224|ref|YP_003510502.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568444|gb|ADD41409.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 420 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 34/96 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 + RR G +QE L + LG+ V ++E+G+ + ++E L P+ + Sbjct: 6 LAARRRARGHTQETLAQRLGVNVSSVARWERGLAIPYPHVRRALAEELGLPVEELTALLT 65 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + + L+ ++ Sbjct: 66 PAADPEPAAPSESVPPSWNRRRLEALATGLRGAQPA 101 >gi|167044884|gb|ABZ09551.1| putative helix-turn-helix motif protein [uncultured marine crenarchaeote HF4000_APKG8D22] Length = 137 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 47/136 (34%), Gaps = 10/136 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK + V +G R+R R L + +L + + I+ + E + A + Sbjct: 1 MQEKK--SGVAKFLGSRLRQWRKSLPLKSFELAKLIKISQGSLSDIENNKSLPSADTIAK 58 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + + + I + + + P + + +D + + I Sbjct: 59 LYQHTDLNIIWLLTGRGPIKKTQQAPGGE------EPCVNEAMETYG--EDPTLNELIQR 110 Query: 122 LVRSIVSSEKKYRTIE 137 LVR+ S + + + Sbjct: 111 LVRTYYSGDAEKKAHL 126 >gi|15894837|ref|NP_348186.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024511|gb|AAK79526.1|AE007666_1 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325508975|gb|ADZ20611.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 118 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 11/110 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++++ R + Q + + +G TFQ++ +E G RV L + E+ + Sbjct: 5 EIGRKLKAARENANLKQSDVAKIIGSTFQKISSFETGRTRVDLETLIRLCEIYNVDADYI 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 S+++ N + P+ L F Q+ D V++ I + + Sbjct: 65 L----------STDKKNSNNLTLKPEESNLIVKFRQLPD-SVKEDITDFI 103 >gi|125973071|ref|YP_001036981.1| transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256004574|ref|ZP_05429552.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281417266|ref|ZP_06248286.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|125713296|gb|ABN51788.1| transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|255991446|gb|EEU01550.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281408668|gb|EFB38926.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|316940708|gb|ADU74742.1| Cupin 2 conserved barrel domain protein [Clostridium thermocellum DSM 1313] Length = 183 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + KRI+ R I G+S E L LGI + +YE G + S L I+ +S Sbjct: 6 KQISKRIKELREISGISAETLARELGIDSKTYTEYESGNVDIPVSLLFKIAGRFNVELSE 65 Query: 73 FFDVSPTV 80 Sbjct: 66 ILTGEAPK 73 >gi|325969996|ref|YP_004246187.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] gi|324025234|gb|ADY11993.1| helix-turn-helix domain protein [Spirochaeta sp. Buddy] Length = 175 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 23/54 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G + R ++QE++ L ++ + V ++E G L +++ E Sbjct: 7 GAFFKELRKEKKLTQEQVSVRLNVSNRTVSRWETGSTMPDLDVLMQMADFYEVD 60 >gi|323142483|ref|ZP_08077303.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413060|gb|EFY03959.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 141 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Query: 7 IPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + +D +G RI+ R G++Q + G++ + E G ++G + H++ V Sbjct: 1 MKLDIDYKAIGLRIKAARARKGLTQGNIANLTGLSTPHISNIETGNTKLGLPTIIHLANV 60 Query: 66 LESPISFFFDVSPTVCSDI 84 L+ + + I Sbjct: 61 LDVSVDELLCDNIHHSEQI 79 >gi|311030060|ref|ZP_07708150.1| transcriptional regulator, XRE family protein [Bacillus sp. m3-13] Length = 302 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 6/94 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G R++ R G+S E L I + + E+G + + SE + Sbjct: 3 ELGNRLKQAREEKGLSLEDLQTVTKIQKRYLIGIEEGNYSIMPGQFYARAFIRQYSEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 F+ +E + + T + Sbjct: 63 LDPELIFEEYQNDIPANDKDEIPQLSRVKTRKQV 96 >gi|332653727|ref|ZP_08419471.1| DNA-binding protein [Ruminococcaceae bacterium D16] gi|332516813|gb|EGJ46418.1| DNA-binding protein [Ruminococcaceae bacterium D16] Length = 310 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 29/62 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R G++QE+L E L ++ Q V K+E + +L + + ++ + Sbjct: 4 GENLQFYRAREGLTQEELAERLEVSRQSVSKWESNTSFPEMEKLMTLCSLFQTDLDTLVR 63 Query: 76 VS 77 Sbjct: 64 GD 65 >gi|300783935|ref|YP_003764226.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793449|gb|ADJ43824.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 74 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 9/82 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 MV ++ N +R R G M+Q L +G+T Q V E+G Sbjct: 1 MVKPTRVTNS--------LRALRFAHGQMTQADLATRIGVTRQTVIAIEQGRYSPSLEMA 52 Query: 60 QHISEVLESPISFFFDVSPTVC 81 I+ V P+ F Sbjct: 53 FQIAHVFGVPLEEVFQYPEETS 74 >gi|260426928|ref|ZP_05780907.1| transcriptional regulator, XRE family with cupin sensor [Citreicella sp. SE45] gi|260421420|gb|EEX14671.1| transcriptional regulator, XRE family with cupin sensor [Citreicella sp. SE45] Length = 189 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 38/87 (43%), Gaps = 4/87 (4%) Query: 9 NPVDINVGK---RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + D +G+ R++ R G+S + + + G++ V + E+G + + L +++ Sbjct: 4 HDADAVLGRIPGRLKDARQAKGLSLDAVAKLSGVSRSMVSQIERGESNPTVATLWNLTRA 63 Query: 66 LESPISFFFD-VSPTVCSDISSEENNV 91 L+ + D +P ++ + Sbjct: 64 LQVDFAGLLDLGAPARAIEVIRADQAP 90 >gi|261820696|ref|YP_003258802.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604709|gb|ACX87195.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 96 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 2/92 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+ I+L R G+SQ L + + E S L I+ L+ P+S Sbjct: 1 MNIGQAIKLCRTRRGISQTDLANKAECSVSYLSMLENNKRDPTLSTLTKIATALKLPVSI 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F ++ ++ + L+L Sbjct: 61 IFFIAAETGDLNGMDKGLQGELA--RTALELL 90 >gi|239814885|ref|YP_002943795.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801462|gb|ACS18529.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 182 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +I+ RM G+S +L G++ + + E+G+ L I+ L P+S FF Sbjct: 2 GLQIKALRMAAGISGNELAHRCGVSGSLLSRVERGLVSPSVETLNRIAVGLNVPLSRFFC 61 Query: 76 VSPTVCS 82 Sbjct: 62 DHARRTD 68 >gi|211639114|emb|CAR67726.1| transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211639120|emb|CAR67732.1| Putative phage regulatory protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] Length = 128 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 12/115 (10%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ R M+Q +L E L + + ++E+G + + I++VL+S + + Sbjct: 19 KRLKEAREARKMTQARLAELLNVDRRVYNRWERGASVPQLDAVVRIAQVLQSSLDALVGL 78 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 P I P L + D + I+ L+ S++ K Sbjct: 79 EPMAPPQ-----------IHNPRLQALVTQMDSLSDEDQQALIV-LMDSLLKRSK 121 >gi|116510961|ref|YP_808177.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116106615|gb|ABJ71755.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 104 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R+ G +QE+LG+ L + Q V +E G + LQ +S + E I Sbjct: 44 NLRQERLEAGWTQEELGKLLFTSKQAVCNWEHGRRQPNLMLLQEMSNLFECSIDALL 100 >gi|42784215|ref|NP_981462.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42740146|gb|AAS44070.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 79 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVE 65 Query: 72 FFFDVSPTVCSDIS 85 F + Sbjct: 66 EIFMLVEGEDDGEE 79 >gi|322804888|emb|CBZ02447.1| putative HTH DNA binding protein [Clostridium botulinum H04402 065] Length = 70 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 29/67 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R M+Q++L + + ++ + + EKG I+ V + I + + Sbjct: 3 NRVKELRSASNMTQQQLADLVSVSSRTIISLEKGQYNPSIMLAYKIARVFNTTIEELYCL 62 Query: 77 SPTVCSD 83 + ++ Sbjct: 63 KENLENE 69 >gi|315150985|gb|EFT95001.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0012] Length = 128 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 23/57 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R++ R ++Q++L + L + K E G + + L ++ + Sbjct: 8 ERLKQLRENKELTQKELADLLHMDRSVYNKIESGARPIRDNELIQFADFYNVSTDYL 64 >gi|310816433|ref|YP_003964397.1| uncharacterized transcription regulator, XRE family [Ketogulonicigenium vulgare Y25] gi|308755168|gb|ADO43097.1| uncharacterized transcription regulator, XRE family [Ketogulonicigenium vulgare Y25] Length = 73 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 21/55 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG R G++QE + G + Q + E+G L +++ L Sbjct: 7 VGGNFARLRQAKGLTQEDVEARSGFSQQYISGLERGQRNPTIITLYELAQALGVS 61 >gi|309807064|ref|ZP_07701044.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 03V1-b] gi|325911652|ref|ZP_08174060.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|308166560|gb|EFO68759.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 03V1-b] gi|325476638|gb|EGC79796.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] Length = 227 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 39/126 (30%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I R ++ E+LG+ LG + ++ G ++ I+ + I Sbjct: 9 GQMIDYFRKQNNLTMEELGQKLGKATSSISRWVSGERYPKIEEIEQIANFFNTDIYTLIF 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S + Q+D+ ++ I + S +Y Sbjct: 69 GFNYNEDSKSDLLTVYNQLADIRKHKVYSYAQQQLDEQNKKRSIYVVGTSAAGEPIEYGD 128 Query: 136 IEEECM 141 + E + Sbjct: 129 FDSEMI 134 >gi|296132191|ref|YP_003639438.1| transcriptional regulator, XRE family [Thermincola sp. JR] gi|296030769|gb|ADG81537.1| transcriptional regulator, XRE family [Thermincola potens JR] Length = 131 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESP 69 ++ +G +I+ + M Q L + G++ + + ++ I++ L Sbjct: 1 MNNTLGDKIKHLLFLRSMKQADLVKVSGVSKATISELINNKQKNPSIETIEKIAKALRVS 60 Query: 70 ISFFFDVSPTVCSDISSEENNVM-DFISTPDGLQLNRYFIQIDDV----KVRQKIIELVR 124 +F + + +++ + +FI + + ++ +V +KIIE Sbjct: 61 PLYFLEENAVTPLEVAPHLPQHIREFILNSENMDYIVLAHKLKSKNLPVEVMEKIIESYE 120 Query: 125 SIVSSEK 131 S++ ++K Sbjct: 121 SLIQNKK 127 >gi|288935233|ref|YP_003439292.1| XRE family transcriptional regulator [Klebsiella variicola At-22] gi|288889942|gb|ADC58260.1| transcriptional regulator, XRE family [Klebsiella variicola At-22] Length = 189 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 15/135 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++ ++ R G S +L E G++ + + E+ + + L I+ L P Sbjct: 3 IAQHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPF 62 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S F + S ++ ++ P +L I ++ Sbjct: 63 SAFIVPDASAAPSAFDPQQQAMVVTPVFPWDPELRFDHFSI--------------TLAPG 108 Query: 130 EKKYRTIEEECMVEQ 144 T E+ ++E Sbjct: 109 ALSESTPHEKGVIEH 123 >gi|229131388|ref|ZP_04260287.1| hypothetical protein bcere0014_3580 [Bacillus cereus BDRD-ST196] gi|229165389|ref|ZP_04293175.1| hypothetical protein bcere0007_3780 [Bacillus cereus AH621] gi|228618093|gb|EEK75132.1| hypothetical protein bcere0007_3780 [Bacillus cereus AH621] gi|228652079|gb|EEL08017.1| hypothetical protein bcere0014_3580 [Bacillus cereus BDRD-ST196] Length = 83 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 22 NQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|269129117|ref|YP_003302487.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268314075|gb|ACZ00450.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 487 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 45/143 (31%), Gaps = 13/143 (9%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P P + VG+R+R R+ MSQ +L ++ + E G + L+ ++E L Sbjct: 1 MPGPGN--VGERVRNLRLTRRMSQAQL-AGHDLSDSYISLIESGKRTPTPAVLRLLAERL 57 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY-----FIQIDDVKV----RQ 117 + + DD ++ R Sbjct: 58 GCTAEYLAEGIEPEQRAHLEVRERYARLALNAGDAPAALAGFDEVISGSDDPELTVRARW 117 Query: 118 KIIELVRSIVSSEKKYRTIEEEC 140 + + ++ E + I EE Sbjct: 118 GRAQALEALGRLE-EAIAIFEEL 139 >gi|225378528|ref|ZP_03755749.1| hypothetical protein ROSEINA2194_04196 [Roseburia inulinivorans DSM 16841] gi|225209631|gb|EEG91985.1| hypothetical protein ROSEINA2194_04196 [Roseburia inulinivorans DSM 16841] Length = 131 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 GKR+ R G++QE+L LG+ + Q V + E G L +S +L Sbjct: 41 KEFGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLLIELSCILHVSTD 100 Query: 72 FFFDVSPTVCSDISSEENNVMDFIST 97 + S + ++ +++ +ST Sbjct: 101 YLLMGSEPSKEKVKNDLLSIISELST 126 >gi|226325033|ref|ZP_03800551.1| hypothetical protein COPCOM_02825 [Coprococcus comes ATCC 27758] gi|225206381|gb|EEG88735.1| hypothetical protein COPCOM_02825 [Coprococcus comes ATCC 27758] Length = 112 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 31/70 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 + R M+Q+ L + L ++ + V K+E+G + + L I+++L ++ Sbjct: 8 LAEVRKEKQMTQKDLADKLFVSDKTVSKWERGNSMPNVTLLIPIADILGITVTELLQGEK 67 Query: 79 TVCSDISSEE 88 + + + Sbjct: 68 LKENKTLNSD 77 >gi|218289581|ref|ZP_03493801.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|258511692|ref|YP_003185126.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218240231|gb|EED07414.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|257478418|gb|ACV58737.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 145 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 43/122 (35%), Gaps = 7/122 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G SQ++L G++ + E+ R + +++ L P+ D Sbjct: 6 GARVRAIRQSRGWSQQELAMRAGVSTPHISSIERDKRRPSLDYAKRLADALGVPLQVLCD 65 Query: 76 VS-----PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK--IIELVRSIVS 128 + + + + F+ + ++ + + + +L+ + Sbjct: 66 PEMTYEPKRMRNSVYELPTPLQHFVLNEESFPYLEAAHRMSQLSKEEASFLWQLIDVLAQ 125 Query: 129 SE 130 + Sbjct: 126 KK 127 >gi|206580811|ref|YP_002238246.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|290509290|ref|ZP_06548661.1| HTH-type transcriptional regulator ydcN [Klebsiella sp. 1_1_55] gi|206569869|gb|ACI11645.1| DNA-binding protein [Klebsiella pneumoniae 342] gi|289778684|gb|EFD86681.1| HTH-type transcriptional regulator ydcN [Klebsiella sp. 1_1_55] Length = 189 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 15/135 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++ ++ R G S +L E G++ + + E+ + + L I+ L P Sbjct: 3 IAQHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPF 62 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S F + S ++ ++ P +L I ++ Sbjct: 63 SAFIVPDASAAPSAFDPQQQAMVVTPVFPWDPELRFDHFSI--------------TLAPG 108 Query: 130 EKKYRTIEEECMVEQ 144 T E+ ++E Sbjct: 109 ALSESTPHEKGVIEH 123 >gi|152970487|ref|YP_001335596.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238894976|ref|YP_002919710.1| putative regulator [Klebsiella pneumoniae NTUH-K2044] gi|262044571|ref|ZP_06017627.1| DNA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330003723|ref|ZP_08304741.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] gi|150955336|gb|ABR77366.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547292|dbj|BAH63643.1| putative regulator [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259038115|gb|EEW39330.1| DNA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536860|gb|EGF63164.1| DNA-binding helix-turn-helix protein [Klebsiella sp. MS 92-3] Length = 189 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 45/135 (33%), Gaps = 15/135 (11%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++ ++ R G S +L E G++ + + E+ + + L I+ L P Sbjct: 3 IAQHLAATLKTLRQQRGWSLSRLAEETGVSKAMLGQIERNESSPTVATLWKIATGLNVPF 62 Query: 71 SFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S F + S ++ ++ P +L I ++ Sbjct: 63 SAFIVPDASAAPSAFDPQQQAMVVTPVFPWDPELRFDHFSI--------------TLAPG 108 Query: 130 EKKYRTIEEECMVEQ 144 T E+ ++E Sbjct: 109 ALSESTPHEKGVIEH 123 >gi|189426312|ref|YP_001953489.1| XRE family transcriptional regulator [Geobacter lovleyi SZ] gi|189422571|gb|ACD96969.1| transcriptional regulator, XRE family [Geobacter lovleyi SZ] Length = 188 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 24/60 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ ++ + + G + + + E + L I+ + I FF Sbjct: 7 IGAKIKKLRLAKKLTLQAVARETGFSPALISQIENNNVSPPIATLSKIARFFDVKIGHFF 66 >gi|318061096|ref|ZP_07979817.1| putative transcriptional regulator [Streptomyces sp. SA3_actG] Length = 243 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 3/81 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + +D V KR+R R+ G S E+L ++ + + E G R+ L Sbjct: 1 MTQDD---DDLDSLVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLV 57 Query: 61 HISEVLESPISFFFDVSPTVC 81 ++ L++ + + + Sbjct: 58 TLARALDTSLDQLVETASDDV 78 >gi|257886685|ref|ZP_05666338.1| predicted protein [Enterococcus faecium 1,141,733] gi|293378131|ref|ZP_06624300.1| DNA-binding protein [Enterococcus faecium PC4.1] gi|257822739|gb|EEV49671.1| predicted protein [Enterococcus faecium 1,141,733] gi|292642995|gb|EFF61136.1| DNA-binding protein [Enterococcus faecium PC4.1] Length = 299 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 57/142 (40%), Gaps = 12/142 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + K +R R+ G+SQ++L + + IT + KYE G + L + E + + Sbjct: 1 MEIHKLLRKLRVERGLSQKELSKGI-ITRETFVKYENGKTNIPFFVLIELLEKMNLSLDE 59 Query: 73 F-FDVSPTVCSDISSEENN-----VMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS- 125 F F + + + + D + LQ R + + V + + ++ Sbjct: 60 FIFYLDKDILREKNWSLKKLIKKIREDKSISQHMLQALRKKARNTNNIVDIRNYLVAKTI 119 Query: 126 ----IVSSEKKYRTIEEECMVE 143 + SE+K ++E + E Sbjct: 120 GWYQLADSERKLNNSDKEYLSE 141 >gi|284032140|ref|YP_003382071.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811433|gb|ADB33272.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 73 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 1/66 (1%) Query: 17 KRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RIR R ++Q +L LG+T Q V E+G I+ V P++ F Sbjct: 8 NRIRALRTDHAELTQAELARRLGVTRQTVIAIEQGRYSPSLELAFQIAHVFGVPLADVFQ 67 Query: 76 VSPTVC 81 Sbjct: 68 YPGEET 73 >gi|259909520|ref|YP_002649876.1| transcriptional repressor [Erwinia pyrifoliae Ep1/96] gi|224965142|emb|CAX56674.1| transcriptional repressor [Erwinia pyrifoliae Ep1/96] Length = 136 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M GKR++ R +Q+++ +G+ Q KYE G++ A +L Sbjct: 4 MTDELMQTEEQRRAFGKRLKELRNQQRRTQKEVAALIGLQLSQYNKYESGMHIPPAEKLI 63 Query: 61 HISEVLESPISFFFDVS 77 ++E+ + I + S Sbjct: 64 QLAELFTTTIDYLLLGS 80 >gi|255100610|ref|ZP_05329587.1| hypothetical protein CdifQCD-6_07342 [Clostridium difficile QCD-63q42] Length = 118 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 32/93 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ +R G +QE L + + T + + +E + + +L+ + F Sbjct: 12 ALGREIKRKREAKGWTQEYLAQLVDRTPRSIMYFENRGQHPSLNTFYQLVTLLDISVDDF 71 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 F + + + L + Sbjct: 72 FYPDKQNGQSDCRKHIDHLLNEMDEKELTIIEA 104 >gi|254465943|ref|ZP_05079354.1| DNA-binding protein [Rhodobacterales bacterium Y4I] gi|206686851|gb|EDZ47333.1| DNA-binding protein [Rhodobacterales bacterium Y4I] Length = 218 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R G++ L G++ + K E G + LQ ++ L PI Sbjct: 30 LEVAIGREVRSFRRQQGITVADLANLTGLSIGMLSKIENGNTSPSLTTLQLLANALSVPI 89 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + FF + ++ + Sbjct: 90 TSFFRRFEETREAVHTKAGEGAE 112 >gi|126011121|ref|YP_001039946.1| hypothetical protein phi3396_59 [Streptococcus phage phi3396] gi|124389390|gb|ABN10832.1| hypothetical protein phi3396_59 [Streptococcus phage phi3396] Length = 86 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG++IR +R + ++Q +L E L Q + E G R L + ++ + F Sbjct: 23 FVGEQIRHQRKLAKLNQSQLAELLDTNQQTIGMMENGKRRATLQDLVKLRKIFNVSVDDF 82 Query: 74 F 74 Sbjct: 83 L 83 >gi|83648267|ref|YP_436702.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83636310|gb|ABC32277.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 106 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 39/116 (33%), Gaps = 15/116 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFF 73 +G+++R R +S E+L + + E + ++ I+ L+ F Sbjct: 5 LGRKLRKLREQQKLSLEQLAVLSDSSKSYLWNLENFESSNPSVDKIGKIATALKVTSEFL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + S +E R + + + ++++ ++V + Sbjct: 65 LNDSAATPDQGVIDEAFF-------------RKYKSLPEAD-KKRLRQIVEAWAGE 106 >gi|158313540|ref|YP_001506048.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|288918218|ref|ZP_06412573.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|158108945|gb|ABW11142.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] gi|288350388|gb|EFC84610.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 165 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 6/108 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISEVLESPI 70 +G R+R R G+S + E ++ V YE+G V RL ++E P+ Sbjct: 6 KALGARLRAIRTQQGLSLHGVEEKSHGRWKAVVVGSYERGDRAVTVQRLSELAEFYGVPV 65 Query: 71 SFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 V+P S + + + G L RY I + Sbjct: 66 GELLPEGSTVAPLEQSPRIVLDLERLAQVPKEQGGPLARYAATIQSQR 113 >gi|119387592|ref|YP_918626.1| XRE family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119378167|gb|ABL72930.1| transcriptional regulator, XRE family [Paracoccus denitrificans PD1222] Length = 211 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 29/74 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R ++ +++ G++ + K E+ + LQ I+ L+ +S Sbjct: 26 LELGPRLKALRKGQQLTLQEVARLTGVSTSALSKIERNDLSPTLTTLQRIASGLQVELSA 85 Query: 73 FFDVSPTVCSDISS 86 P Sbjct: 86 LLGDEPGHAPTTGR 99 >gi|323701996|ref|ZP_08113665.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323533082|gb|EGB22952.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 180 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 33/59 (55%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++IR R ++ ++L E G++ + + E+G + + + L+ I++ L PI+ FF Sbjct: 6 EKIRSLRNQQNLTLKELSEKTGLSVSFLSQVERGTSSLAITSLKKIADALNVPITSFFT 64 >gi|319790798|ref|YP_004152438.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315593261|gb|ADU34327.1| transcriptional regulator, XRE family with shikimate kinase activity [Variovorax paradoxus EPS] Length = 312 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 41/120 (34%), Gaps = 3/120 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 NP+ +G R+R R G++++ + ++ + + E G+ LQ ++ L Sbjct: 25 AKNPLLAALGDRVRNLRAQRGLTRKAVAVAADVSERHLANLEYGIGNASILVLQQVAGAL 84 Query: 67 ESPISFFFDVSPTVCSD---ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 ++ T + I N + + L R + I LV Sbjct: 85 HCSLAELVGDITTSSPEWLLIRELLENRSEADLRRVRVALGELLGTASVDSARHRRIALV 144 >gi|295110810|emb|CBL24763.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 71 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R G+ QE L LGIT Q + KYE+ V + L+ I+ + V Sbjct: 3 SRIKQLREKRGLIQEILAAELGITQQMLSKYERDVTLIKVDILKKIATYFNVTTDYLLGV 62 Query: 77 SP 78 S Sbjct: 63 SD 64 >gi|226325982|ref|ZP_03801500.1| hypothetical protein COPCOM_03796 [Coprococcus comes ATCC 27758] gi|225205524|gb|EEG87878.1| hypothetical protein COPCOM_03796 [Coprococcus comes ATCC 27758] Length = 219 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK VG+R++ RR L ++ +LG+ +G+ +Q+YE + + Sbjct: 1 MKTLKKEITFTAKQVGERVKERRTELNLTMPELGKRIGVNKSTIQRYEADGVDPKRTMII 60 Query: 61 H-ISEVLESPISFFFDVSPTVCSDISS 86 + ++E L + + +S D + Sbjct: 61 NGLAEALLTTPEWLTGLSEDKEYDSRT 87 >gi|218897425|ref|YP_002445836.1| transcriptional regulator, XRE family [Bacillus cereus G9842] gi|218544646|gb|ACK97040.1| transcriptional regulator, XRE family [Bacillus cereus G9842] Length = 292 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ F Sbjct: 6 LGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYIF 64 Query: 75 DVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + D + +L + + Sbjct: 65 ALTKNKKIKYIENVKCVMRDCVKQKKYNELYEIVKKEKNEN 105 >gi|254235322|ref|ZP_04928645.1| hypothetical protein PACG_01222 [Pseudomonas aeruginosa C3719] gi|126167253|gb|EAZ52764.1| hypothetical protein PACG_01222 [Pseudomonas aeruginosa C3719] Length = 193 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 14/142 (9%) Query: 12 DINVGKRIRL----RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 D +G+R+ R +S + L G++ + + E G + L I++ L+ Sbjct: 6 DDLIGQRVAHNLLRLRGKRNLSLDALARISGVSRAMLAQIESGRSVPSIKVLCKIAQGLK 65 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI--IEL-VR 124 ++ F D + ++ + + DG +R + V +++ EL +R Sbjct: 66 VSVAAFLD--DRAFAGVAVLPAQQSKRLVSADGAFTSRA---LFPFDVARQVEFYELRLR 120 Query: 125 SIVSSEKKYRTI--EEECMVEQ 144 + + + +E +V Q Sbjct: 121 GLGQEDAEAHAPGIQENLVVAQ 142 >gi|116490172|ref|YP_809716.1| XRE family transcriptional regulator [Oenococcus oeni PSU-1] gi|116090897|gb|ABJ56051.1| Transcriptional regulator, xre family [Oenococcus oeni PSU-1] Length = 192 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R LGM+Q+++ E L ++ Q + +EKG N L +S++ + + Sbjct: 7 ISSKRRELGMTQDQVAELLYVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLDVLIKGDK 66 Query: 79 TVCSDISSEENN 90 V + + + Sbjct: 67 KVMKKVQEDSQD 78 >gi|115375803|ref|ZP_01463055.1| transcriptional regulator, MerR family [Stigmatella aurantiaca DW4/3-1] gi|115367191|gb|EAU66174.1| transcriptional regulator, MerR family [Stigmatella aurantiaca DW4/3-1] Length = 392 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ NVG ++R R+ + Q + LG++ + EKG + L + Sbjct: 4 NALNANVGLKLRGLRLARNIKQTDAAKDLGVSPAYLNLIEKGKRVMPFPLLWKALRYFDQ 63 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 F D + + + + L ++ +Q + K+ V ++ + Sbjct: 64 DPEQFMSTLGEGRVDEALAKLLDEPLLKS---LDIDSESLQSLSAEP--KLAGTVAALFN 118 Query: 129 SEKKYRTIEEECMVE 143 K RT E + + Sbjct: 119 LYKNTRTQLENVLTQ 133 >gi|52842310|ref|YP_096109.1| prophage repressor CI-like [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629421|gb|AAU28162.1| hypothetical prophage repressor CI-like [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 234 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 38/93 (40%), Gaps = 1/93 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G+RI+ R+ G++++ L E + ++ +E+G G ++ ++ L+ Sbjct: 11 IKEKIGQRIQEERIAKGLTRKALEELTDDLKQSRISNWERGDRTPGPEEIKQLARALDIS 70 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 ++ ++ +++ + Sbjct: 71 PAYLMCLTDEKRPKKIPGLGSLVPLLDHQQACD 103 >gi|75761711|ref|ZP_00741654.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490805|gb|EAO54078.1| Transcriptional regulator, Xre family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 220 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R MSQ +L + + Q+ K EKG+ + L +SE + ++ F Sbjct: 6 LGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERIGIDPNYIF 64 Query: 75 DVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + D + + +L + + Sbjct: 65 ALTKNKKIKYIENVKCVMRDCVKQKEYNELYEIVKKEKNEN 105 >gi|15601046|ref|NP_232676.1| transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121728097|ref|ZP_01681134.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V52] gi|147672473|ref|YP_001215786.1| transcriptional regulator [Vibrio cholerae O395] gi|153819592|ref|ZP_01972259.1| transcriptional regulator, HTH_3 family [Vibrio cholerae NCTC 8457] gi|153824257|ref|ZP_01976924.1| transcriptional regulator, HTH_3 family [Vibrio cholerae B33] gi|229506566|ref|ZP_04396075.1| hypothetical protein VCF_001785 [Vibrio cholerae BX 330286] gi|229510638|ref|ZP_04400118.1| hypothetical protein VCE_002046 [Vibrio cholerae B33] gi|229517231|ref|ZP_04406676.1| hypothetical protein VCC_001252 [Vibrio cholerae RC9] gi|229522958|ref|ZP_04412372.1| hypothetical protein VIF_003528 [Vibrio cholerae TM 11079-80] gi|229606045|ref|YP_002876749.1| hypothetical protein VCD_000995 [Vibrio cholerae MJ-1236] gi|254850521|ref|ZP_05239871.1| transcriptional regulator [Vibrio cholerae MO10] gi|255745921|ref|ZP_05419868.1| predicted transcriptional regulator [Vibrio cholera CIRS 101] gi|262163521|ref|ZP_06031267.1| predicted transcriptional regulator [Vibrio cholerae INDRE 91/1] gi|262168221|ref|ZP_06035919.1| predicted transcriptional regulator [Vibrio cholerae RC27] gi|298500125|ref|ZP_07009931.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9657676|gb|AAF96189.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629645|gb|EAX62066.1| transcriptional regulator, HTH_3 family [Vibrio cholerae V52] gi|126509874|gb|EAZ72468.1| transcriptional regulator, HTH_3 family [Vibrio cholerae NCTC 8457] gi|126518220|gb|EAZ75445.1| transcriptional regulator, HTH_3 family [Vibrio cholerae B33] gi|146314856|gb|ABQ19396.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O395] gi|227014947|gb|ACP11156.1| transcriptional regulator, HTH_3 family [Vibrio cholerae O395] gi|229340175|gb|EEO05183.1| hypothetical protein VIF_003528 [Vibrio cholerae TM 11079-80] gi|229345267|gb|EEO10240.1| hypothetical protein VCC_001252 [Vibrio cholerae RC9] gi|229353083|gb|EEO18023.1| hypothetical protein VCE_002046 [Vibrio cholerae B33] gi|229356917|gb|EEO21835.1| hypothetical protein VCF_001785 [Vibrio cholerae BX 330286] gi|229372531|gb|ACQ62953.1| hypothetical protein VCD_000995 [Vibrio cholerae MJ-1236] gi|254846226|gb|EET24640.1| transcriptional regulator [Vibrio cholerae MO10] gi|255735675|gb|EET91073.1| predicted transcriptional regulator [Vibrio cholera CIRS 101] gi|262023464|gb|EEY42167.1| predicted transcriptional regulator [Vibrio cholerae RC27] gi|262028088|gb|EEY46747.1| predicted transcriptional regulator [Vibrio cholerae INDRE 91/1] gi|297542106|gb|EFH78157.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 207 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIEMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|325660973|ref|ZP_08149600.1| hypothetical protein HMPREF0490_00332 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472480|gb|EGC75691.1| hypothetical protein HMPREF0490_00332 [Lachnospiraceae bacterium 4_1_37FAA] Length = 65 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RI+ R M QE+L +G+ + + EKG +I++ I Sbjct: 1 MIKNRIKEYRARFDMKQEELAAKVGVRRETIGNLEKGKYNPSLVLAWNIAKTFHVTIEEI 60 Query: 74 FDVSP 78 F V Sbjct: 61 FTVEE 65 >gi|320189877|gb|EFW64529.1| hypothetical protein ECoD_03358 [Escherichia coli O157:H7 str. EC1212] Length = 373 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 1/91 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++L R G++ E+L LG+T Q + K E+G + L +++ L+ SFFF Sbjct: 12 GDCLKLARQAKGVTGEELATALGVTRQFINKLERG-YPPSSQMLTALADYLDVKESFFFT 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + + + + L R Sbjct: 71 GRKSPLDSENCHFRSKRSRTQSLTNSILARA 101 >gi|309776579|ref|ZP_07671559.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] gi|308915680|gb|EFP61440.1| DNA-binding protein [Erysipelotrichaceae bacterium 3_1_53] Length = 189 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 50/123 (40%), Gaps = 4/123 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ N+G+ I+ +R M+ + + E ++ + + E+G+ + L+ +++ L + Sbjct: 1 MNKNIGELIKQKRTENKMTLKDISEATELSIGYLSQLERGLTSIAHDTLKKVAKALGVEM 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 ++F + + + I ++ + + + + +LV + E Sbjct: 61 TYFMEQPKIKEKAVLRSYEREILRIEGSSIIE----YAMTNMADRGEMLPKLVEILPQKE 116 Query: 131 KKY 133 + Sbjct: 117 VEE 119 >gi|303246058|ref|ZP_07332339.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492454|gb|EFL52325.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 35/63 (55%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+I+ R ++QEKL + G++ Q + + E+G + ++ +++ L+ P++ F Sbjct: 9 GKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLAKALDIPMAELFS 68 Query: 76 VSP 78 + Sbjct: 69 LEE 71 >gi|312195542|ref|YP_004015603.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311226878|gb|ADP79733.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 165 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 6/108 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISEVLESPI 70 +G R+R R G+S + E ++ V YE+G V RL ++E P+ Sbjct: 6 KALGARLRAIRTQQGLSLHGVEEKSHGRWKAVVVGSYERGDRAVTVQRLSELAEFYGVPV 65 Query: 71 SFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 V+P S + + + G L RY I + Sbjct: 66 GELLPEGSTVAPLEQSPRIVLDLERLSQVPKEQGGPLARYAATIQSQR 113 >gi|262371152|ref|ZP_06064473.1| RtrR protein [Acinetobacter johnsonii SH046] gi|262313882|gb|EEY94928.1| RtrR protein [Acinetobacter johnsonii SH046] Length = 70 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+ IR +R +QE L GI + + E+G + +L I+ +L+ Sbjct: 6 IEIGQLIRKKRKEKKFTQEALALQCGIDRSYLGRIERGEVNITVLKLYEIAHILKVEPYH 65 Query: 73 FF 74 Sbjct: 66 LL 67 >gi|241889648|ref|ZP_04776946.1| XRE family transcriptional regulator [Gemella haemolysans ATCC 10379] gi|241863270|gb|EER67654.1| XRE family transcriptional regulator [Gemella haemolysans ATCC 10379] Length = 218 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 35/92 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +SQ + + LG+T +EKG L ++ ++F Sbjct: 5 NRLKSLRTKQKVSQTAVAKHLGVTRAAYNSWEKGKYIPNKKNLDELALYFNVETTYFESE 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 V + E N ++ + L +++ + Sbjct: 65 YEIVNKYLQLNEINQKKLLTMANELYVSQLYK 96 >gi|254823632|ref|ZP_05228633.1| predicted protein [Listeria monocytogenes FSL J1-194] gi|293592855|gb|EFG00616.1| predicted protein [Listeria monocytogenes FSL J1-194] Length = 237 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 12/106 (11%), Positives = 36/106 (33%), Gaps = 3/106 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +++ R +Q L E +G++ + V ++E+ + + I V + + + Sbjct: 1 MAIHMKLKEERKRKQWTQNVLAEKIGVSREVVGRWERLESIPTLKNCKSICRVFDITMDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS---TPDGLQLNRYFIQIDDVKV 115 + D + + R + I ++ Sbjct: 61 LIKDEVDTKDNQLKYMKLGKDILDLANERYPIDFIRKYHIISKEEI 106 >gi|168177941|ref|ZP_02612605.1| conserved domain protein [Clostridium botulinum NCTC 2916] gi|226947828|ref|YP_002802919.1| hypothetical protein CLM_0683 [Clostridium botulinum A2 str. Kyoto] gi|182670461|gb|EDT82435.1| conserved domain protein [Clostridium botulinum NCTC 2916] gi|226840843|gb|ACO83509.1| conserved domain protein [Clostridium botulinum A2 str. Kyoto] Length = 70 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 29/68 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R M+Q++L + + ++ + + EKG I+ V + I + + Sbjct: 3 NKVKELRTASNMTQQQLADLVSVSSRTIISLEKGQYNPSIMLAYKIAIVFNTTIEDLYCL 62 Query: 77 SPTVCSDI 84 + ++ Sbjct: 63 RENLENED 70 >gi|148975472|ref|ZP_01812343.1| transcriptional regulator, HTH_3 family protein [Vibrionales bacterium SWAT-3] gi|145964900|gb|EDK30151.1| transcriptional regulator, HTH_3 family protein [Vibrionales bacterium SWAT-3] Length = 207 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAMGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|111224613|ref|YP_715407.1| putative transcriptional regulator [Frankia alni ACN14a] gi|111152145|emb|CAJ63873.1| putative transcriptional regulator (DNA-binding protein) [Frankia alni ACN14a] Length = 169 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 6/108 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISEVLESPI 70 +G R+R R G+S + E ++ V YE+G V RL ++E P+ Sbjct: 10 KALGARLRAIRTQQGLSLHGVEEKSHGRWKAVVVGSYERGDRAVTVQRLSELAEFYGVPV 69 Query: 71 SFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 V+P S + + + G L RY I + Sbjct: 70 GELLPEGSTVAPLEQSPRIVLDLERLSQVPKEQGGPLARYAATIQSQR 117 >gi|86741890|ref|YP_482290.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86568752|gb|ABD12561.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 165 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 6/108 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISEVLESPI 70 +G R+R R G+S + E ++ V YE+G V RL ++E P+ Sbjct: 6 KALGARLRAIRTQQGLSLHGVEEKSHGRWKAVVVGSYERGDRAVTVQRLSELAEFYGVPV 65 Query: 71 SFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 V+P S + + + G L RY I + Sbjct: 66 GELLPEGSTVAPLEQSPRIVLDLERLSQVPKEQGGPLARYAATIQSQR 113 >gi|86145397|ref|ZP_01063728.1| transcriptional regulator, HTH_3 family protein [Vibrio sp. MED222] gi|85836974|gb|EAQ55094.1| transcriptional regulator, HTH_3 family protein [Vibrio sp. MED222] Length = 207 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + Sbjct: 26 LRLGQRIKDIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAMGLQIDMPQ 85 Query: 73 FFD 75 F+ Sbjct: 86 LFE 88 >gi|113460568|ref|YP_718632.1| transcriptional regulator [Haemophilus somnus 129PT] gi|112822611|gb|ABI24700.1| transcriptional regulator [Haemophilus somnus 129PT] Length = 146 Score = 43.7 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 36/80 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R+ ++Q++L G+T ++ YE G +LQ I++ L IS D Sbjct: 4 GKKLKQIRLFRKLTQKELAIMSGLTDAAIRNYELGNRSPNIEQLQKIADALNCDISALID 63 Query: 76 VSPTVCSDISSEENNVMDFI 95 P +I + + Sbjct: 64 HDPNSIFEIMHIIFDYEKEM 83 >gi|332297016|ref|YP_004438938.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332180119|gb|AEE15807.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 100 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 25/70 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G SQ + E ++ + E G + + ++ VLE P + F Sbjct: 10 RNLKFFRKQKGFSQSEFAERCDVSNGTIGNIECGAAKPSFDLILVMAAVLEIPPARLFAD 69 Query: 77 SPTVCSDISS 86 + Sbjct: 70 PAAEKEPAAE 79 >gi|319655076|ref|ZP_08009143.1| hypothetical protein HMPREF1013_05766 [Bacillus sp. 2_A_57_CT2] gi|317393240|gb|EFV74011.1| hypothetical protein HMPREF1013_05766 [Bacillus sp. 2_A_57_CT2] Length = 65 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 30/59 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R++R ++QE++ + +G + + +YE+ R LQ +++ ++ Sbjct: 5 LGGNLRIQRFKKNLTQEEVAKAIGTSHSMIGRYERNKTRPRRGTLQKLADFYGVSVNEL 63 >gi|315146278|gb|EFT90294.1| transcriptional activator, Rgg/GadR/MutR family protein [Enterococcus faecalis TX4244] Length = 289 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK++++ R G++Q ++ + + ++ K EKG +++ A L I + + I FF Sbjct: 4 IGKQLKIERKNRGLTQSEMCQPI-LSTSYYAKVEKGYHKIAAEDLLSILKQNKIDIIDFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S E + S Q ++ Sbjct: 63 ISLEKKGATDISYEQLIHLAWSEAHLKQDIPKLHRLK 99 >gi|313899221|ref|ZP_07832739.1| cupin domain protein [Clostridium sp. HGF2] gi|312955982|gb|EFR37632.1| cupin domain protein [Clostridium sp. HGF2] Length = 177 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 35/76 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++IR R ++ E+L +T + + E+ + S L+ I E L + ++ Sbjct: 1 MDIGQKIRQLRTQNNLTLEELASRSELTKGFLSQVERNLTSPSVSTLEDILEALGTDLAS 60 Query: 73 FFDVSPTVCSDISSEE 88 FF S E+ Sbjct: 61 FFKDSKENKVVFKKED 76 >gi|282165400|ref|YP_003357785.1| putative HTH-type transcriptional regulator [Methanocella paludicola SANAE] gi|282157714|dbj|BAI62802.1| putative HTH-type transcriptional regulator [Methanocella paludicola SANAE] Length = 63 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R M+QE L +G++ Q + E G ++ E+ I F Sbjct: 3 NRLKELRARFNMTQEDLAVKVGVSRQTINAIETGKYDPSLPLAFKLARCFETNIEHLFME 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|257877872|ref|ZP_05657525.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] gi|257812038|gb|EEV40858.1| conserved hypothetical protein [Enterococcus casseliflavus EC20] Length = 110 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 41/109 (37%), Gaps = 5/109 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R+ +Q+++ + LGIT +E N + ++E+ + F Sbjct: 1 MLGERLRTLRLRTNQTQQQIADQLGITRAAYSHFENDRNEPDGETIVKLAEIFQVSTDFL 60 Query: 74 FD-----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + + ++ D ++ + Y I ++ Sbjct: 61 LGRQVPAGFTQPSAKVQTVAAHIDDDVTDEQMEDILSYIEFIKQRHAQK 109 >gi|229079791|ref|ZP_04212324.1| Transcriptional regulator [Bacillus cereus Rock4-2] gi|228703631|gb|EEL56084.1| Transcriptional regulator [Bacillus cereus Rock4-2] Length = 116 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 45/118 (38%), Gaps = 7/118 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R+ M+QE+ G+ + +T V K+E G ++ I++ P+++ + + Sbjct: 6 RIKQIRLEHKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFAVPVNYLYGEN 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 D + E + + +++ + +++ KK Sbjct: 66 NEANQDDNKYEKFKEIMAW-------LEPLPKDKEDMALDQMLAIAQALNKHHKKMEK 116 >gi|227545279|ref|ZP_03975328.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300908649|ref|ZP_07126112.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] gi|227184748|gb|EEI64819.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300894056|gb|EFK87414.1| XRE family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 69 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G+SQ KL + +G+ Q + E ++++ L + ++ F Sbjct: 2 NRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYNPSLELCINLAKALNTDLNSLFWE 61 Query: 77 SPTVCSDI 84 T + Sbjct: 62 EHTDERNN 69 >gi|259909529|ref|YP_002649885.1| transcriptional repressor [Erwinia pyrifoliae Ep1/96] gi|224965151|emb|CAX56683.1| transcriptional repressor [Erwinia pyrifoliae Ep1/96] Length = 136 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 33/77 (42%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M GKR++ R +Q+++ +G+ Q KYE G++ A +L Sbjct: 4 MTDELMQTEEQRRAFGKRLKELRNQQRRTQKEVAALIGLQLSQYNKYESGMHIPPAEKLI 63 Query: 61 HISEVLESPISFFFDVS 77 ++E+ + I + S Sbjct: 64 QLAELFTTTIDYLLLGS 80 >gi|255282221|ref|ZP_05346776.1| LexA repressor [Bryantella formatexigens DSM 14469] gi|255267169|gb|EET60374.1| LexA repressor [Bryantella formatexigens DSM 14469] Length = 206 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 14 NVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RIR +R +GM+QE+L + + K E G N + S++ ++ L + +S+ Sbjct: 3 EIGIRIREQREAIGMTQEELASKLGYKNKSSIAKIETGANDIVQSKVIEFADALNTTVSY 62 Query: 73 FFDVSPTVCSD 83 T + Sbjct: 63 LMGWEKTNVNS 73 >gi|218281915|ref|ZP_03488247.1| hypothetical protein EUBIFOR_00815 [Eubacterium biforme DSM 3989] gi|218217058|gb|EEC90596.1| hypothetical protein EUBIFOR_00815 [Eubacterium biforme DSM 3989] Length = 152 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFF 74 G+++R R MSQ++L +G++++ ++ +E + L +++ L+ +S+ Sbjct: 17 GEKVRSLRKEKKMSQQELASMVGVSYRTIRSWEVEGRFPKQNVLYQKLADALQCDVSYLM 76 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + ++ S + N + Q F Sbjct: 77 SENEAFITEASEQFGNRGARQAQQILEQAAAMFA 110 >gi|196035713|ref|ZP_03103116.1| DNA-binding protein [Bacillus cereus W] gi|228913383|ref|ZP_04077016.1| Transcriptional regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925881|ref|ZP_04088965.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228932124|ref|ZP_04095015.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|195991680|gb|EDX55645.1| DNA-binding protein [Bacillus cereus W] gi|228827552|gb|EEM73295.1| Transcriptional regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228833896|gb|EEM79449.1| Transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846292|gb|EEM91311.1| Transcriptional regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 66 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 28/63 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R+ L ++Q++L +G+T Q + EKG I ++ ++ F Sbjct: 4 SKIKVARVQLDLTQQQLAAKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLFWE 63 Query: 77 SPT 79 Sbjct: 64 EKE 66 >gi|149004216|ref|ZP_01829008.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|149012995|ref|ZP_01833884.1| transcriptional regulator, putative [Streptococcus pneumoniae SP19-BS75] gi|149019646|ref|ZP_01834965.1| transcriptional regulator, putative [Streptococcus pneumoniae SP23-BS72] gi|225856698|ref|YP_002738209.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] gi|303255604|ref|ZP_07341655.1| transcriptional regulator [Streptococcus pneumoniae BS455] gi|303260497|ref|ZP_07346465.1| hypothetical protein CGSSp9vBS293_00385 [Streptococcus pneumoniae SP-BS293] gi|303262854|ref|ZP_07348791.1| hypothetical protein CGSSp14BS292_00280 [Streptococcus pneumoniae SP14-BS292] gi|303265324|ref|ZP_07351234.1| hypothetical protein CGSSpBS397_00505 [Streptococcus pneumoniae BS397] gi|303266531|ref|ZP_07352418.1| hypothetical protein CGSSpBS457_06420 [Streptococcus pneumoniae BS457] gi|303268350|ref|ZP_07354146.1| hypothetical protein CGSSpBS458_03609 [Streptococcus pneumoniae BS458] gi|147757811|gb|EDK64823.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|147763148|gb|EDK70089.1| transcriptional regulator, putative [Streptococcus pneumoniae SP19-BS75] gi|147931021|gb|EDK82001.1| transcriptional regulator, putative [Streptococcus pneumoniae SP23-BS72] gi|225726271|gb|ACO22123.1| helix-turn-helix domain protein [Streptococcus pneumoniae P1031] gi|301801880|emb|CBW34601.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302597460|gb|EFL64555.1| transcriptional regulator [Streptococcus pneumoniae BS455] gi|302636052|gb|EFL66550.1| hypothetical protein CGSSp14BS292_00280 [Streptococcus pneumoniae SP14-BS292] gi|302638409|gb|EFL68876.1| hypothetical protein CGSSpBS293_00385 [Streptococcus pneumoniae SP-BS293] gi|302642071|gb|EFL72422.1| hypothetical protein CGSSpBS458_03609 [Streptococcus pneumoniae BS458] gi|302643982|gb|EFL74242.1| hypothetical protein CGSSpBS457_06420 [Streptococcus pneumoniae BS457] gi|302645189|gb|EFL75426.1| hypothetical protein CGSSpBS397_00505 [Streptococcus pneumoniae BS397] Length = 158 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHDLTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|225378306|ref|ZP_03755527.1| hypothetical protein ROSEINA2194_03967 [Roseburia inulinivorans DSM 16841] gi|83596349|gb|ABC25509.1| transcriptional regulator [Roseburia inulinivorans DSM 16841] gi|225209873|gb|EEG92227.1| hypothetical protein ROSEINA2194_03967 [Roseburia inulinivorans DSM 16841] Length = 113 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 15/122 (12%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ RR +QE L +GI+ + E+G +V L I+ L++ + Sbjct: 7 AIGTRIKERRAKKKWTQEMLASAVGISNPHMSNIERGRTKVSLGTLTDIANALDTTLDEL 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + EE + ++ + + + + ++V+++V S K Sbjct: 67 ICDNLVRGKVVFDEEISQE---------------LKECNEEDIRIVYDMVKALVKSLAKR 111 Query: 134 RT 135 + Sbjct: 112 KH 113 >gi|289664488|ref|ZP_06486069.1| phage-related protei [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 76 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 1/74 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VG R+ R LG++Q ++ E G++ +EK N G + L + + Sbjct: 1 MTTALPETVGARLLTERKRLGLTQIEMAERCGVSQWAQLYFEKDRNLPGGAYLIA-AHHI 59 Query: 67 ESPISFFFDVSPTV 80 I + +P Sbjct: 60 GVNILYVLTGTPPS 73 >gi|238021090|ref|ZP_04601516.1| hypothetical protein GCWU000324_00988 [Kingella oralis ATCC 51147] gi|237868070|gb|EEP69076.1| hypothetical protein GCWU000324_00988 [Kingella oralis ATCC 51147] Length = 351 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 3/110 (2%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF---FDVSPTV 80 LG++Q L E L ++ V Y G+N + +E+L P+S F Sbjct: 46 KELGLTQAILAEKLDVSQGAVNMYLNGINPLNTPIASRFAELLNVPVSDFSPRLAAEIGR 105 Query: 81 CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + + + D L R I ++ + I + +I + E Sbjct: 106 MAQTIASTTMQVSHSTLKDRLIYAREQKGISQEQLGKAINKSQSAIAALE 155 Score = 36.3 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R G+SQE+LG+ + + + E G N+ G++ + I+EVL + Sbjct: 125 RLIYAREQKGISQEQLGKAINKSQSAIAALETGRNQ-GSTNIAKIAEVLGVSAIWLETGQ 183 Query: 78 PTVCSDISSEENNVMDFISTP 98 + ++ N + I P Sbjct: 184 GEMYPQSTTPRINEITDIHRP 204 >gi|255092517|ref|ZP_05321995.1| putative phage repressor [Clostridium difficile CIP 107932] Length = 113 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/123 (13%), Positives = 48/123 (39%), Gaps = 20/123 (16%) Query: 16 GKRIRLRRMILGMSQEKLGECLG------ITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G+R + R + ++Q++L E + +YE + + L++ ++ + Sbjct: 5 GERFKFLRTEMNLTQDELVEKFNKVYLTSFNKSTISQYENNKRKPEINILENWADFFDVS 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I + + N +D ++T +I + ++++ + + +++ Sbjct: 65 IDYLLG---------RTLVRNHIDTVATHKANP-----NEILPEEAQEQLNDYIEFLINK 110 Query: 130 EKK 132 KK Sbjct: 111 YKK 113 >gi|229917145|ref|YP_002885791.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229468574|gb|ACQ70346.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 69 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++Q L E +G+T Q + EKG HI+ V E P+ F + Sbjct: 5 NRVKELRARHQLTQGDLAEKVGVTRQTIISLEKGSYTPSLMLAMHIARVFEEPVESIFTI 64 Query: 77 SPTV 80 Sbjct: 65 EEES 68 >gi|157374197|ref|YP_001472797.1| XRE family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157316571|gb|ABV35669.1| transcriptional regulator, XRE family [Shewanella sediminis HAW-EB3] Length = 184 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R + G+SQ +L + G+T + EK S L+ + L + FF Sbjct: 5 IGTSLKAVRKLKGLSQRELAKRAGVTNSTISMIEKNSVSPSVSSLKKVLSGLPMSLVDFF 64 Query: 75 DVSPTVCSD 83 + + S+ Sbjct: 65 SMEDSGGSE 73 >gi|111225661|ref|YP_716455.1| hypothetical protein FRAAL6319 [Frankia alni ACN14a] gi|111153193|emb|CAJ64942.1| hypothetical protein FRAAL6319 [Frankia alni ACN14a] Length = 409 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 43/117 (36%), Gaps = 1/117 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G R+ R ++Q +L E G++ V K E G + V S L ++ L P + Sbjct: 11 ALGSRVAQVRRRRSLTQAELAEAAGVSVDLVCKLEAGSKDGVRLSSLHALARALAVPTAT 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 F + D + + P + +R +++ + R+ + Sbjct: 71 FLEAREGPVMDAGDLAVLPLRRMLVPGPAASRAEGPSLLLASLRGRVLAVTRAYHQA 127 >gi|99082865|ref|YP_615019.1| XRE family transcriptional regulator [Ruegeria sp. TM1040] gi|99039145|gb|ABF65757.1| transcriptional regulator, XRE family with cupin sensor [Ruegeria sp. TM1040] Length = 188 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 31/81 (38%), Gaps = 3/81 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + R++ R G+S E + G++ V + E+G + + L Sbjct: 1 MTDTT---DDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLW 57 Query: 61 HISEVLESPISFFFDVSPTVC 81 +++ L+ + + Sbjct: 58 NLTRALQVDFAGLLEAGEAAD 78 >gi|84386363|ref|ZP_00989391.1| transcriptional regulator, putative [Vibrio splendidus 12B01] gi|84378787|gb|EAP95642.1| transcriptional regulator, putative [Vibrio splendidus 12B01] Length = 101 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 4/77 (5%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEV 65 +D + R++ R +SQ++LG +GI + +YEKG + S L+ + + Sbjct: 2 SIDNPIPMRLKEVRKKAKISQKELGVRIGIDESSASARMNQYEKGKHTPDISTLKKMGDE 61 Query: 66 LESPISFFFDVSPTVCS 82 L P+++FF + Sbjct: 62 LGVPLNYFFCEDESSAE 78 >gi|297617996|ref|YP_003703155.1| XRE family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145833|gb|ADI02590.1| transcriptional regulator, XRE family [Syntrophothermus lipocalidus DSM 12680] Length = 127 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R+R R G+S + + + LG +T K E G+ R + I++ L + I F Sbjct: 19 QRLRDLRKSKGISAKHMADLLGLVTKAAYYKKESGMTRFTLHEARIIAQRLGTSIDELFF 78 Query: 76 VSPTVCSDISSEENNVMDFIST 97 C D ++ V + ++ Sbjct: 79 ADEVSCRDTKADTETVSQYFAS 100 >gi|260778027|ref|ZP_05886920.1| predicted transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] gi|260606040|gb|EEX32325.1| predicted transcriptional regulator [Vibrio coralliilyticus ATCC BAA-450] Length = 207 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGERIKDIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLALGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|238916590|ref|YP_002930107.1| hypothetical protein EUBELI_00647 [Eubacterium eligens ATCC 27750] gi|238871950|gb|ACR71660.1| Hypothetical protein EUBELI_00647 [Eubacterium eligens ATCC 27750] Length = 294 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 37/71 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I+ R+ G +Q +LG+ LG+T + + ++EKG + S ++ +S VL+ I Sbjct: 7 GELIKSARIKKGYTQVELGDLLGVTNKAISRWEKGDSFPDISVIEELSRVLDIRIQDIVI 66 Query: 76 VSPTVCSDISS 86 T ++ Sbjct: 67 GDVTEPDSETA 77 >gi|228921183|ref|ZP_04084513.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838499|gb|EEM83810.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 292 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ F Sbjct: 6 LGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYIF 64 Query: 75 DVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + D + + +L + + Sbjct: 65 ALTKNKKIKYIENVKCVMRDCVKQKEYNELYEIVKKEKNEN 105 >gi|255520348|ref|ZP_05387585.1| hypothetical protein LmonocFSL_03812 [Listeria monocytogenes FSL J1-175] Length = 237 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 46/128 (35%), Gaps = 7/128 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +++ R +Q L E +G++ + V ++E+ + + I V + + + Sbjct: 1 MAIHMKLKEERKRKQWTQNVLAEKIGVSREVVGRWERLESIPTLKNCKIICRVFDITMDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS---TPDGLQLNRYFIQIDDVK----VRQKIIELVRS 125 + D + + R + I + R+K ++ + Sbjct: 61 LIKDEVDTKDNQLKYMKLGKDILDLANERYPIDFIRKYHIISKEEIFAIPRKKGLDFLSK 120 Query: 126 IVSSEKKY 133 + S+ +K Sbjct: 121 VRSNLEKE 128 >gi|254477883|ref|ZP_05091268.1| transcriptional regulator, XRE family [Ruegeria sp. R11] gi|214028468|gb|EEB69304.1| transcriptional regulator, XRE family [Ruegeria sp. R11] Length = 203 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 10/114 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK IR R G++ E+ + I + K E R ++ + + L+ Sbjct: 23 ALGKMIRESRKEKGLTLEEAAKAANIGRSTLSKIENNQTRPSFEIIRRLMQTLDLQTPQL 82 Query: 74 F--------DVSPTVCSDISSEENNVMDFISTPDGLQLN--RYFIQIDDVKVRQ 117 F E + +L R I +K R Sbjct: 83 FVQSAKSDISGRRDHTRKGEGEHQETPTYDHELVCNELTSKRMLPYISQIKARD 136 >gi|209558928|ref|YP_002285400.1| Hypothetical phage associated protein SpyM3_0964 [Streptococcus phage NZ131.1] gi|209540129|gb|ACI60705.1| Hypothetical phage associated protein SpyM3_0964 [Streptococcus phage NZ131.1] Length = 222 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 49/113 (43%), Gaps = 4/113 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 R++ R ++Q++L E +G+ ++ +Q +EK ++ + + +++ + + + Sbjct: 2 NRLKELRENNSITQQELAEKIGVHYRTIQNWEKDTKTQIKPEKAKMLADYFDVSVGYLLG 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + E+ F + ++ +D K++++ IE R + Sbjct: 62 YTDIPQKY---EDEKFYKFSFDEEETIYPSSDMRDEDEKIKEQFIEFNRYLRR 111 >gi|172058590|ref|YP_001815050.1| helix-turn-helix domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171991111|gb|ACB62033.1| helix-turn-helix domain protein [Exiguobacterium sibiricum 255-15] Length = 294 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 1/111 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R R ++Q+ L + + ++ K E G + L +S L+ PI+ F Sbjct: 8 QIGLALRRLRKKHNLTQKDLANGI-CSQAEISKIESGTHSPTVDLLYALSRRLQVPINTF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 D + S +EN ++ F ++ I+ + +++ LVR Sbjct: 67 LDHTNYRESLKILDENLLVRFRNSEFQSIYQETQKMINSSPLDRELNLLVR 117 >gi|169628144|ref|YP_001701793.1| putative transcription regulator protein [Mycobacterium abscessus ATCC 19977] gi|169240111|emb|CAM61139.1| Putative transcription regulator protein [Mycobacterium abscessus] Length = 173 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 29/75 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E+LG G+T + K E+ + S I+ L+ +S F Sbjct: 5 VRALRRERGLTLEELGSRTGLTKSYLSKVEREHSTPSVSVAMRIAGALDVDVSRLFTNDA 64 Query: 79 TVCSDISSEENNVMD 93 + + D Sbjct: 65 YESRVVVDRGADEWD 79 >gi|115378362|ref|ZP_01465526.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|310818241|ref|YP_003950599.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115364638|gb|EAU63709.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309391313|gb|ADO68772.1| Transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length = 168 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 4/115 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R LG++QE++ E + +T + + E+G R I VL + Sbjct: 9 LGRNIRQARHRLGLTQEQMAERINMTPEVYGRMERGNLVPRLERFVVICRVLGETPNRLI 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI--IELVRSIV 127 +D E + D P R + + + R + +E+ I Sbjct: 69 SSREPATAD--EETSEAPDPAEVPIEDLQRRLGANMREARKRLGLTQVEMAERIR 121 Score = 37.9 bits (86), Expect = 0.45, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G +R R LG++Q ++ E + + + E+G R I +VL Sbjct: 96 RRLGANMREARKRLGLTQVEMAERIRMPVDLYGRMERGETLPRLDRFVTICQVLGEMSDQ 155 Query: 73 FFDVSPTVCS 82 ++P Sbjct: 156 LLGLAPPTAD 165 >gi|15895220|ref|NP_348569.1| phage related transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15024927|gb|AAK79909.1|AE007699_19 Phage related transcriptional regulator (Xre family) [Clostridium acetobutylicum ATCC 824] gi|325509365|gb|ADZ21001.1| Phage related transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 123 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 12/92 (13%), Positives = 32/92 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ ++ R G++Q +L G++ + K E+G LQ +S + Sbjct: 1 MLGENLKKLRKEKGLTQRQLAGETGLSVSIISKLEEGKKTGSIETLQTLSNYFNVTVDEL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + + ++ + ++ Sbjct: 61 SENKSANIDKKEYAVDELLKRLVKKGLIENVE 92 >gi|332981042|ref|YP_004462483.1| helix-turn-helix domain-containing protein [Mahella australiensis 50-1 BON] gi|332698720|gb|AEE95661.1| helix-turn-helix domain protein [Mahella australiensis 50-1 BON] Length = 209 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 35/82 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK + R ++QE + E LG++ Q + +E + +++ I +LE ++ Sbjct: 5 GKLLMDLRNAKQLTQEDVAEKLGVSRQTISSWETNRTKPNYDQIKQICAILEVDMNTLLG 64 Query: 76 VSPTVCSDISSEENNVMDFIST 97 + + +N+ + T Sbjct: 65 NGAGSNKKSAKQVSNIFPILVT 86 >gi|325479131|gb|EGC82228.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 91 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R GM+Q +LGE +G++ Q + E+G ++ V E + F++ Sbjct: 27 NNLSSLRKEKGMNQTELGEKVGVSRQTISLIERGDYNPSVLVALSLARVFEVKVEDIFNL 86 Query: 77 SP 78 Sbjct: 87 EE 88 >gi|229166643|ref|ZP_04294395.1| Transcriptional regulator, Xre [Bacillus cereus AH621] gi|228616897|gb|EEK73970.1| Transcriptional regulator, Xre [Bacillus cereus AH621] Length = 404 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+ L SF Sbjct: 4 LGEKIKTLRKEKKLTQTEL-AGSELTKSMLSQIENGKATPSMKALQYIANKLGCETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDDVEIVELIQ 74 >gi|229190633|ref|ZP_04317630.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] gi|228592978|gb|EEK50800.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] Length = 292 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ F Sbjct: 6 LGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYIF 64 Query: 75 DVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + D + +L + + Sbjct: 65 ALTKNKKIKYIENVKCVMRDCVKQKQYNELYEIVKKEKNDD 105 >gi|83316484|gb|ABC02417.1| PlcR [Bacillus weihenstephanensis] Length = 287 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 45/105 (42%), Gaps = 3/105 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSDNV-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +V + + + +S Q + + + ++K Sbjct: 65 EVLIYSDIERKKLFKDRIQMLSKKK--QYAEIYSIVSNELKKEKF 107 >gi|116628615|ref|YP_821234.1| XRE family transcriptional regulator [Streptococcus thermophilus LMD-9] gi|116101892|gb|ABJ67038.1| Transcriptional regulator, xre family [Streptococcus thermophilus LMD-9] Length = 170 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 3/111 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + F Sbjct: 9 GPNLARLRIEKGVSQTQLAEYLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLFG 68 Query: 76 VSPT-VCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIELVR 124 S E N D +S ++ F++ D + + ++ L R Sbjct: 69 TSKEIELEKSVLESNEYSDKVSEILKAVKYIENFLE-TDGQYLEDLLYLTR 118 >gi|325300497|ref|YP_004260414.1| helix-turn-helix domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324320050|gb|ADY37941.1| helix-turn-helix domain protein [Bacteroides salanitronis DSM 18170] Length = 101 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 30/68 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ +R SQE + E L ++ V + E V ++ +VLE I+ F Sbjct: 4 IGAKLKRKREEKNYSQEYVAEQLDVSPSTVSRVESDAGNVKLCIIEKYCKVLEMSIAELF 63 Query: 75 DVSPTVCS 82 + + Sbjct: 64 AGDASPTA 71 >gi|291008215|ref|ZP_06566188.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 201 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 3/104 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P + + +R R +G+S +L + GI + + E G L Sbjct: 16 MSTTESTPLEI---ISAALRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGNPSVETLW 72 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ L P S D + + + + + L Sbjct: 73 ALAVALGVPFSRLVDPPRPQVRIVRAGQATFVRSEQSTYAAALL 116 >gi|289423964|ref|ZP_06425757.1| hypothetical phagelike protein [Peptostreptococcus anaerobius 653-L] gi|289155741|gb|EFD04413.1| hypothetical phagelike protein [Peptostreptococcus anaerobius 653-L] Length = 253 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 2/92 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 KRI+ +R+ LG++QE+LG+ +G V KYE G V + S ++ +S + + Sbjct: 41 KRIKEKRLELGLTQEELGKMIGTQRAAVNKYESGLVENMKRSTIKQLSLIFNVDPKWLMA 100 Query: 76 VSPTVCSDISSEENNVMDFIS-TPDGLQLNRY 106 + ++ M +S + L+ Sbjct: 101 FDIDEINTGNNHNEYRMFPVSISAGCLEDIEA 132 >gi|229589612|ref|YP_002871731.1| putative regulatory protein [Pseudomonas fluorescens SBW25] gi|229361478|emb|CAY48354.1| putative regulatory protein [Pseudomonas fluorescens SBW25] Length = 65 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 26/57 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R R LG SQ L E LG++ Q + E G I++V E PI F+ Sbjct: 5 MRQLRSELGWSQADLAERLGVSRQTINAIETGRYDPSLPLAFKIAKVFERPIEGIFE 61 >gi|228901070|ref|ZP_04065279.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] gi|228858586|gb|EEN03037.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 4222] Length = 220 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ F Sbjct: 6 LGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYIF 64 Query: 75 DVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + D + + +L + + Sbjct: 65 ALTKNKKIKYIENVKCVMRDCVKQKEYNELYEIVKKEKNEN 105 >gi|255306540|ref|ZP_05350711.1| XRE family transcriptional regulator [Clostridium difficile ATCC 43255] Length = 73 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 19/58 (32%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R + Q+ + +GIT E G + +S+ I F Sbjct: 2 NNLKELRTERNLKQKDVALKVGITTSYYGMIESGTRVPSLAIAIKLSKCFGVSIEKIF 59 >gi|160933343|ref|ZP_02080731.1| hypothetical protein CLOLEP_02188 [Clostridium leptum DSM 753] gi|156867220|gb|EDO60592.1| hypothetical protein CLOLEP_02188 [Clostridium leptum DSM 753] Length = 81 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 1/69 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESP 69 + +G+RI ++ L + G+ + + +G L I+ Sbjct: 3 ISQAIGERILSLCKTRNITVNHLADMSGVWQSTLSEIVRGVSRNPRIKTLYQIATGFGMT 62 Query: 70 ISFFFDVSP 78 +S F D Sbjct: 63 LSEFLDFPE 71 >gi|153833004|ref|ZP_01985671.1| transcriptional regulator, HTH_3 family [Vibrio harveyi HY01] gi|156977184|ref|YP_001448090.1| hypothetical protein VIBHAR_05970 [Vibrio harveyi ATCC BAA-1116] gi|269963350|ref|ZP_06177680.1| transcriptional regulator, HTH_3 family [Vibrio harveyi 1DA3] gi|148870725|gb|EDL69631.1| transcriptional regulator, HTH_3 family [Vibrio harveyi HY01] gi|156528778|gb|ABU73863.1| hypothetical protein VIBHAR_05970 [Vibrio harveyi ATCC BAA-1116] gi|269831924|gb|EEZ86053.1| transcriptional regulator, HTH_3 family [Vibrio harveyi 1DA3] Length = 207 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAHGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|148642086|ref|YP_001272599.1| transcriptional regulator [Methanobrevibacter smithii ATCC 35061] gi|148551103|gb|ABQ86231.1| predicted transcriptional regulator [Methanobrevibacter smithii ATCC 35061] Length = 193 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 2/76 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN +G++I+ + +S ++L + + V+K G + L I+ VL Sbjct: 1 MPNK--NKIGEKIKTLMEVRNVSLDELANDSDVNIELVEKILNGEIIPSLTPLTKIARVL 58 Query: 67 ESPISFFFDVSPTVCS 82 I F D Sbjct: 59 GVRIGTFIDDDEQTGP 74 >gi|134098587|ref|YP_001104248.1| DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|133911210|emb|CAM01323.1| possible DNA-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 186 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 3/104 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P + + +R R +G+S +L + GI + + E G L Sbjct: 1 MSTTESTPLEI---ISAALRRERDRVGLSLTELAKRAGIAKSTLSQLESGAGNPSVETLW 57 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 ++ L P S D + + + + + L Sbjct: 58 ALAVALGVPFSRLVDPPRPQVRIVRAGQATFVRSEQSTYAAALL 101 >gi|108761724|ref|YP_633114.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108465604|gb|ABF90789.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 539 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 49/135 (36%), Gaps = 5/135 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N ++ NVG ++R R+ + Q + LG++ + EKG + L + Sbjct: 4 NALNANVGLKLRGLRLARNIKQADAAKDLGVSPAYLNLIEKGKRVMPFPLLWKALRYFDQ 63 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 F D + + + + L ++ +Q + K+ V ++ + Sbjct: 64 DPEQFMSTLGEGRVDEALAKLLDEPLLKS---LDIDPESLQSLSAEP--KLAGTVAALFN 118 Query: 129 SEKKYRTIEEECMVE 143 K RT E + + Sbjct: 119 LYKNTRTQLENVLAQ 133 >gi|121603936|ref|YP_981265.1| XRE family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120592905|gb|ABM36344.1| transcriptional regulator, XRE family [Polaromonas naphthalenivorans CJ2] Length = 223 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 42/91 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G+++R RR LG+ +++ G++ + + E+G+ + L +S L+ P+ Sbjct: 34 IDLWLGEQVRHRRKALGLPLQQVARGCGVSVSLLSQIERGLRSISLRTLAALSNELQLPL 93 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 + + + E + V + L Sbjct: 94 ETLIRNTQHDQGEGAPERSVVRAGMHQRIDL 124 >gi|329998016|ref|ZP_08302983.1| cupin domain protein [Klebsiella sp. MS 92-3] gi|328538834|gb|EGF64903.1| cupin domain protein [Klebsiella sp. MS 92-3] Length = 200 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 30/80 (37%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V V R++ R MS ++L I+ + + EK + L ++ L Sbjct: 16 DQVSRAVATRLKAYRKAKKMSLDELSRRASISKGMLVEMEKEAANPSIAILCKLAAALGV 75 Query: 69 PISFFFDVSPTVCSDISSEE 88 ++ +V+ I E Sbjct: 76 SVADIVNVASEPALHIIPAE 95 >gi|325526296|gb|EGD03907.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 132 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 16/119 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I +R G++Q KL E + + + + ++E+G RLQ +S+ L+ + Sbjct: 21 VGTAIAEQRRARGLTQAKLAEMIDLEQEAISRWERGTRMPTLHRLQQLSDALDCSVDQLL 80 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D + + + + D R+ ++ V+ + + Sbjct: 81 QRGSKRPDDQLAMIADALSGL----------------DGDERELVVNFVQQLADMLRAK 123 >gi|310818242|ref|YP_003950600.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309391314|gb|ADO68773.1| Transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length = 155 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 1/125 (0%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + N+G R R LG++QE++ E LGI+ + + E+G+ RL I Sbjct: 9 ERKRVEALRKNLGANTRRARERLGITQEQMAEMLGISPEVYGRMERGLIFPRVERLTVIC 68 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN-RYFIQIDDVKVRQKIIEL 122 E L ++ S + + + L Q+ V VR+ I + Sbjct: 69 EKLGESSDRLLGLANPHESLPAMGTPGYDELLPVLHRLMPVMPRLTQLQRVAVRRHIADF 128 Query: 123 VRSIV 127 R + Sbjct: 129 QRLLS 133 >gi|294338876|emb|CAZ87213.1| putative Shikimate kinase [Thiomonas sp. 3As] Length = 312 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 31/68 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P I +G+R+R R G++++ + ++ + + E GV L +++ L+ Sbjct: 28 HPFLIALGERVRALRARRGLTRKAVAIASDVSERHLANLESGVGNASILVLLQVAQALQC 87 Query: 69 PISFFFDV 76 ++ Sbjct: 88 SLAELIGD 95 >gi|262042671|ref|ZP_06015825.1| cro/CI family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039896|gb|EEW41013.1| cro/CI family transcriptional regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 200 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 30/80 (37%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V V R++ R MS ++L I+ + + EK + L ++ L Sbjct: 16 DQVSRAVATRLKAYRKAKKMSLDELSRRASISKGMLVEMEKEAANPSIAILCKLAAALGV 75 Query: 69 PISFFFDVSPTVCSDISSEE 88 ++ +V+ I E Sbjct: 76 SVADIVNVASEPALHIIPAE 95 >gi|257793053|ref|YP_003186451.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479745|gb|ACV60062.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 201 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 11/134 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + V +R R+ G S +L G+ + + E G + L ++ L P Sbjct: 15 IMKIVSNNLRALRLARGWSISELERRSGVAKGTISQLESGYGNPTVATLWSLASALSVPF 74 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S + + E + + T + I+ I E+V + + Sbjct: 75 SDLIQTAKET--ESVHESPVLAEPSGTTRFVDRVTMEGMIE-------IYEMV--LSKDD 123 Query: 131 KKYRTIEEECMVEQ 144 ++ ++E Sbjct: 124 ERVSEAHPLGIMEH 137 >gi|238896610|ref|YP_002921355.1| putative regulator with helix-turn-helix motif [Klebsiella pneumoniae NTUH-K2044] gi|238548937|dbj|BAH65288.1| putative regulator with helix-turn-helix motif [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 200 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 30/80 (37%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V V R++ R MS ++L I+ + + EK + L ++ L Sbjct: 16 DQVSRAVATRLKAYRKAKKMSLDELSRRASISKGMLVEMEKEAANPSIAILCKLAAALGV 75 Query: 69 PISFFFDVSPTVCSDISSEE 88 ++ +V+ I E Sbjct: 76 SVADIVNVASEPALHIIPAE 95 >gi|227892048|ref|ZP_04009853.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus salivarius ATCC 11741] gi|227866158|gb|EEJ73579.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus salivarius ATCC 11741] Length = 183 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR++ +G++Q +L GI+ + Y KG ++ ++ L ++ Sbjct: 6 KRLKEAIENMGITQAELARRSGISRASITDYLKGKYEAKQDKIYPLARALNVSEAWLMGY 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 S + + + F L ++ Sbjct: 66 SDDASNSVDKSFTFTLTF---NLPADLTDELHRLS 97 >gi|227878075|ref|ZP_03996063.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256843789|ref|ZP_05549276.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256849653|ref|ZP_05555085.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|262047762|ref|ZP_06020714.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|293381795|ref|ZP_06627770.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|312977080|ref|ZP_07788829.1| transcriptional regulator [Lactobacillus crispatus CTV-05] gi|227862335|gb|EEJ69866.1| transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256613694|gb|EEU18896.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256713769|gb|EEU28758.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|260571967|gb|EEX28535.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|290921665|gb|EFD98692.1| helix-turn-helix protein [Lactobacillus crispatus 214-1] gi|310896408|gb|EFQ45473.1| transcriptional regulator [Lactobacillus crispatus CTV-05] Length = 66 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 23/65 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R +SQ +L +G+ Q + E +++ L + ++ F Sbjct: 2 NRVREYRKQKQISQMELARRIGVARQTINLIENDKYNPSLELCLNLAHALGTDLNTLFWD 61 Query: 77 SPTVC 81 Sbjct: 62 GDEAK 66 >gi|259909801|ref|YP_002650157.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|259909810|ref|YP_002650166.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224965423|emb|CAX56955.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224965432|emb|CAX56964.1| putative phage regulatory protein [Erwinia pyrifoliae Ep1/96] Length = 130 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 32/65 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI R ++Q +L E LGI Q + YE G +V A+ L ++++L + Sbjct: 22 KQLGARIAQSRKEQQLTQTQLAEQLGIAQQTMAHYEGGKLKVSAALLPQLAQILNLSLDE 81 Query: 73 FFDVS 77 +S Sbjct: 82 LLGLS 86 >gi|226322393|ref|ZP_03797911.1| hypothetical protein COPCOM_00161 [Coprococcus comes ATCC 27758] gi|225209193|gb|EEG91547.1| hypothetical protein COPCOM_00161 [Coprococcus comes ATCC 27758] Length = 109 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 + RM +Q ++ + LGI+ V YE G L+ I++ +++ S T Sbjct: 9 KNLRMQNHYTQGQMADLLGISRSAVSMYETGNREPDLETLEKIAKFFNVDMNYLLGSSVT 68 Query: 80 VCSDISSEENNVMDFISTP 98 V SD ++ + Sbjct: 69 VTSDNPEPSYEDIEQMIAR 87 >gi|218676580|ref|YP_002395399.1| predicted transcriptional regulator [Vibrio splendidus LGP32] gi|218324848|emb|CAV26582.1| predicted transcriptional regulator [Vibrio splendidus LGP32] Length = 207 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + Sbjct: 26 LRLGQRIKDIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAMGLQIDMPQ 85 Query: 73 FFD 75 F+ Sbjct: 86 LFE 88 >gi|163737915|ref|ZP_02145331.1| 2-amino-3-ketobutyrate coenzyme A ligase [Phaeobacter gallaeciensis BS107] gi|161388531|gb|EDQ12884.1| 2-amino-3-ketobutyrate coenzyme A ligase [Phaeobacter gallaeciensis BS107] Length = 188 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + + R++ R G+S E + G++ V + E+G + + L +++ L+ Sbjct: 6 DDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQV 65 Query: 69 PISFFFDVSPTVCS 82 + D + S Sbjct: 66 DFAGLLDSNEAQDS 79 >gi|163743903|ref|ZP_02151274.1| DNA binding protein, putative [Phaeobacter gallaeciensis 2.10] gi|161382844|gb|EDQ07242.1| DNA binding protein, putative [Phaeobacter gallaeciensis 2.10] Length = 188 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 32/74 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + + R++ R G+S E + G++ V + E+G + + L +++ L+ Sbjct: 6 DDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLWNLTRALQV 65 Query: 69 PISFFFDVSPTVCS 82 + D + S Sbjct: 66 DFAGLLDSNEAQDS 79 >gi|160945398|ref|ZP_02092624.1| hypothetical protein FAEPRAM212_02920 [Faecalibacterium prausnitzii M21/2] gi|158443129|gb|EDP20134.1| hypothetical protein FAEPRAM212_02920 [Faecalibacterium prausnitzii M21/2] gi|295105418|emb|CBL02962.1| transcriptional regulator, XRE family [Faecalibacterium prausnitzii SL3/3] Length = 74 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 24/70 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R + Q+ + L T YE G + L ++ + + + + Sbjct: 3 QRIRDLREDRDLLQKDVAAYLKCTQVCYSNYETGKRDIPTEVLIQLAGLYHTSTDYILGL 62 Query: 77 SPTVCSDISS 86 + I Sbjct: 63 TDDSAPPIPR 72 >gi|157150524|ref|YP_001451028.1| putative transcriptional regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075318|gb|ABV10001.1| putative transcriptional regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 307 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 44/101 (43%), Gaps = 1/101 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RI+ R G+S++ + + + T +Q+Q+ EKG + + ++I++ L+ + Sbjct: 6 ELGQRIQNLRESKGLSRQAICDLEDVLTTRQLQRIEKGQSLPTIATAKYIADKLDVSLDV 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + + + + + + R +I D Sbjct: 66 LANNNSLELPPEYIDLKYQLQTLYHYGDPERLRLLEKIIDE 106 >gi|110799647|ref|YP_695478.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110803761|ref|YP_698224.1| transcriptional regulator [Clostridium perfringens SM101] gi|169346849|ref|ZP_02865797.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|110674294|gb|ABG83281.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110684262|gb|ABG87632.1| transcriptional regulator [Clostridium perfringens SM101] gi|169296908|gb|EDS79032.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] Length = 69 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 28/68 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R + MSQ +L + +G+ Q + E I++ L + ++ F V Sbjct: 2 NKIKEYRSLANMSQLELSKKVGVARQTINLIENQKYNPSLDLCIRIAKALGTDLNTLFWV 61 Query: 77 SPTVCSDI 84 + D Sbjct: 62 NEEEREDE 69 >gi|23502925|ref|NP_699052.1| hypothetical protein BR2077 [Brucella suis 1330] gi|161619991|ref|YP_001593878.1| XRE family transcriptional regulator [Brucella canis ATCC 23365] gi|254705080|ref|ZP_05166908.1| XRE family transcriptional regulator [Brucella suis bv. 3 str. 686] gi|254718120|ref|ZP_05179931.1| XRE family transcriptional regulator [Brucella sp. 83/13] gi|256060042|ref|ZP_05450224.1| XRE family transcriptional regulator [Brucella neotomae 5K33] gi|256370475|ref|YP_003107986.1| hypothetical protein BMI_I2099 [Brucella microti CCM 4915] gi|260567452|ref|ZP_05837922.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|261324018|ref|ZP_05963215.1| transcriptional regulator [Brucella neotomae 5K33] gi|261755782|ref|ZP_05999491.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|265983072|ref|ZP_06095807.1| transcriptional regulator [Brucella sp. 83/13] gi|294851306|ref|ZP_06791979.1| hypothetical protein BAZG_00206 [Brucella sp. NVSL 07-0026] gi|306839747|ref|ZP_07472549.1| XRE family transcriptional regulator [Brucella sp. NF 2653] gi|306842807|ref|ZP_07475447.1| XRE family transcriptional regulator [Brucella sp. BO2] gi|306843496|ref|ZP_07476097.1| XRE family transcriptional regulator [Brucella sp. BO1] gi|23348958|gb|AAN30967.1| conserved hypothetical protein [Brucella suis 1330] gi|161336802|gb|ABX63107.1| transcriptional regulator, XRE family [Brucella canis ATCC 23365] gi|256000638|gb|ACU49037.1| hypothetical protein BMI_I2099 [Brucella microti CCM 4915] gi|260156970|gb|EEW92050.1| helix-turn-helix domain-containing protein [Brucella suis bv. 4 str. 40] gi|261299998|gb|EEY03495.1| transcriptional regulator [Brucella neotomae 5K33] gi|261745535|gb|EEY33461.1| transcriptional regulator [Brucella suis bv. 3 str. 686] gi|264661664|gb|EEZ31925.1| transcriptional regulator [Brucella sp. 83/13] gi|294819895|gb|EFG36894.1| hypothetical protein BAZG_00206 [Brucella sp. NVSL 07-0026] gi|306276187|gb|EFM57887.1| XRE family transcriptional regulator [Brucella sp. BO1] gi|306287001|gb|EFM58512.1| XRE family transcriptional regulator [Brucella sp. BO2] gi|306405207|gb|EFM61484.1| XRE family transcriptional regulator [Brucella sp. NF 2653] Length = 126 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 3/120 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 GKR+R R G++Q+++ + L ++ + E G + LQ I Sbjct: 5 GKRLRELREERGVTQKEMAQALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIWDE-- 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + +S + +P QL + + R I L I ++ K+ R Sbjct: 63 AEELQNLAAVSHPRVVIDTSGLSPQATQLANLLAKNIRLIDRDTIKHLTEEIAAARKRRR 122 >gi|145226144|ref|YP_001136798.1| XRE family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145218607|gb|ABP48010.1| transcriptional regulator, XRE family [Mycobacterium gilvum PYR-GCK] Length = 232 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 25/57 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ R+ G++Q L + + + V +E G A+ ++++ P S + Sbjct: 79 LKHFRIAAGLTQAALAKRINVAPSAVSGWELGKYSPPAALRPVLADLYGVPESDLRE 135 >gi|116493704|ref|YP_805438.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|116103854|gb|ABJ68996.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] Length = 202 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 27/73 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++ RM M+Q L E L ++ V +E N + I+ + E + Sbjct: 5 KQLHQIRMAHQMTQANLAEQLHVSRHTVSNWENDRNLPDLEMVTRIARIFEVSLDTLILD 64 Query: 77 SPTVCSDISSEEN 89 P + + + Sbjct: 65 DPKLNEKLIQDSK 77 >gi|331092326|ref|ZP_08341153.1| hypothetical protein HMPREF9477_01796 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401559|gb|EGG81142.1| hypothetical protein HMPREF9477_01796 [Lachnospiraceae bacterium 2_1_46FAA] Length = 102 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 34/82 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R +SQE L L + Q V ++E + L+ ++ + E + Sbjct: 7 IGEKIKRIRRENNLSQEDLARSLHTSRQTVSRWETNRSVPDLEMLEKVAFIFEMEVKDLL 66 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 DV + E + +S Sbjct: 67 DVKMVNKNQEKQETLDSYLPLS 88 >gi|323693104|ref|ZP_08107323.1| hypothetical protein HMPREF9475_02186 [Clostridium symbiosum WAL-14673] gi|323502858|gb|EGB18701.1| hypothetical protein HMPREF9475_02186 [Clostridium symbiosum WAL-14673] Length = 225 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK P VG+RIR RR L +S +LG+ LG+ +Q+YE + + Sbjct: 1 MKEKKSFGP--KQVGERIRERRTELKLSMPELGKRLGVNKSTIQRYEADGVDPKRTMIID 58 Query: 62 -ISEVLESPISFFFDVSPTVC 81 ++ L + + +S Sbjct: 59 GLAHALLTTPEWLTGLSEDKE 79 >gi|317484534|ref|ZP_07943442.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924195|gb|EFV45373.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 184 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 29/74 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V + ++ R +S + + +C G++ + + E+GV S L I+ L+ + Sbjct: 8 VAENLKRLREERKLSLDAVAKCSGVSKSMLGQIERGVTNPTISTLWKIANGLKISFTSLM 67 Query: 75 DVSPTVCSDISSEE 88 T + Sbjct: 68 MRPETDVEVVPRSA 81 >gi|298372441|ref|ZP_06982431.1| transcriptional regulator [Bacteroidetes oral taxon 274 str. F0058] gi|298275345|gb|EFI16896.1| transcriptional regulator [Bacteroidetes oral taxon 274 str. F0058] Length = 66 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I++ R ++Q +L E +G++ Q + E G +S V E ++ F + Sbjct: 5 IKVERARKNITQGQLAEMVGVSRQTINAIELGKYNPSTVLSLKMSRVFEVSVNDLFCLED 64 Query: 79 TV 80 Sbjct: 65 DD 66 >gi|257077473|ref|ZP_05571834.1| predicted protein [Enterococcus faecalis JH1] gi|294779607|ref|ZP_06744998.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis PC1.1] gi|256985503|gb|EEU72805.1| predicted protein [Enterococcus faecalis JH1] gi|294453264|gb|EFG21675.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis PC1.1] Length = 128 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 23/57 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R++ R ++Q++L + L + K E G + + L ++ + Sbjct: 8 ERLKQLRENKELTQKELADLLHMDRSVYNKIESGARPIRDNELIQFADFYNVSTDYL 64 >gi|251781701|ref|YP_002996003.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390330|dbj|BAH80789.1| transcriptional regulator, Cro/CI family [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|322411061|gb|EFY01969.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|323126498|gb|ADX23795.1| Cro/CI family transcriptional regulator [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 68 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R +SQ+ L + +G++ Q + EKG + I VL+ + F Sbjct: 5 KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLFWEV 64 Query: 78 PTV 80 Sbjct: 65 DDT 67 >gi|300770604|ref|ZP_07080483.1| DNA-binding protein [Sphingobacterium spiritivorum ATCC 33861] gi|300763080|gb|EFK59897.1| DNA-binding protein [Sphingobacterium spiritivorum ATCC 33861] Length = 96 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR++R L +SQE + L ++ K E+G +V ++ I+ + + Sbjct: 1 MEIGEYIRIKRENLKVSQEAVAFKLDMSQAAYSKIERGETKVKVDQVYKIAHLFGISVYE 60 Query: 73 FF 74 Sbjct: 61 LL 62 >gi|238925959|ref|YP_002939477.1| hypothetical protein EUBREC_3617 [Eubacterium rectale ATCC 33656] gi|238877636|gb|ACR77343.1| Hypothetical protein EUBREC_3617 [Eubacterium rectale ATCC 33656] Length = 183 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 43/92 (46%), Gaps = 1/92 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R M+Q++L E +G+T Q + +YEKGV + +++ L+ +D Sbjct: 6 KLKKIRTFRKMTQKELSEKIGLTDQHRIVQYEKGVRVPKKDLVDKMAKALDVNPYTLYDT 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + S++ + +F + L L R F Sbjct: 66 AGRDASEMMELLFWLDEFNPSALHLFLPRKFP 97 >gi|257065055|ref|YP_003144727.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256792708|gb|ACV23378.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 338 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R M+QE+L +G++ Q V K+E +L IS++ + I Sbjct: 6 NLQYLRSTRSMTQEQLAMMVGVSRQSVTKWESERAYPEMDKLLKISQIFDCTIDELVQGD 65 Query: 78 PTVCSDISSEENNVMDFISTPDG 100 T DI E+ +D S G Sbjct: 66 LTH-RDIQPEKAMPVDMSSDSIG 87 >gi|167751804|ref|ZP_02423931.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM 17216] gi|167660045|gb|EDS04175.1| hypothetical protein ALIPUT_00045 [Alistipes putredinis DSM 17216] Length = 224 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 32/82 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++L R +G++QE+L + LGI + E G + + + + L + Sbjct: 3 GDRLKLLRKTIGLTQEQLAQRLGIGKAALSMIETGKAALSSRNKNILVQELNVNPDWLDS 62 Query: 76 VSPTVCSDISSEENNVMDFIST 97 + + + +T Sbjct: 63 GEGEMFNAEPDLTAYMHRTDNT 84 >gi|148272464|ref|YP_001222025.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830394|emb|CAN01329.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 107 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 27/73 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R+R +R +G+SQE L E GI + + K E+G + I+ L+ Sbjct: 11 EFGSRVREQRQRIGISQETLAELSGIHWTALGKIERGQRNPSLRNIIKIASGLDVDAGLL 70 Query: 74 FDVSPTVCSDISS 86 Sbjct: 71 VTGLTADMLPQDD 83 >gi|159898456|ref|YP_001544703.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891495|gb|ABX04575.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 80 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 11 VDINVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + RIRL R I G M+Q LG+ +G+T Q + E G I+ V + P Sbjct: 2 IEGILSNRIRLLRFINGEMTQADLGQRIGVTRQTIAAIEAGKYAPTLEAAFRIAHVFQVP 61 Query: 70 ISFFFDVSPTVCSDI 84 + F P + + Sbjct: 62 LDEVFQWIPHDGAGM 76 >gi|62181204|ref|YP_217621.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128837|gb|AAX66540.1| putative DNA-binding protein [Phage Gifsy-1] gi|322715692|gb|EFZ07263.1| putative DNA-binding protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 139 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 9/143 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K+ N G+R++ G++Q +LG +G T Q V + + L+ Sbjct: 1 MRERKM------NFGERLQRVLNETGITQSELGRRVGATSQSVNGWCQSGILPRKDILEL 54 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + + P+ +FF ++ +L F Q+ V+ + + IE Sbjct: 55 LPKATGKPLYWFFMEDDEESDVPERLTQGGPTDLNDRQ-KRLLEIFDQLPTVE-QDRFIE 112 Query: 122 LV-RSIVSSEKKYRTIEEECMVE 143 L + + + +E Sbjct: 113 LAGARLQELDDFMAEYQRRRKIE 135 >gi|89072143|ref|ZP_01158739.1| Hypothetical transcriptional regulator [Photobacterium sp. SKA34] gi|89052244|gb|EAR57695.1| Hypothetical transcriptional regulator [Photobacterium sp. SKA34] Length = 104 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 2/76 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + NP + ++ R GM+Q + L I Q E G + L +S++ Sbjct: 1 MNNPSSFH--NLLKQTREEHGMTQVDAAKHLKIARQTYLDLENGRTQPRLDTLLELSKMF 58 Query: 67 ESPISFFFDVSPTVCS 82 I +F P++ Sbjct: 59 NKSIMYFAGDRPSLDQ 74 >gi|163943038|ref|YP_001647922.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|83316500|gb|ABC02426.1| PlcR [Bacillus weihenstephanensis] gi|163865235|gb|ABY46294.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 287 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 45/105 (42%), Gaps = 3/105 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSDNV-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +V + + + +S Q + + + ++K Sbjct: 65 EVLIYSDIERKKLFKDRIQMLSKKK--QYAEIYSIVSNELKKEKF 107 >gi|150015772|ref|YP_001308026.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902237|gb|ABR33070.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 113 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ ++Q +L + L + V KYE G LQ I++ E I + + Sbjct: 7 RLKEERIQKNLTQTELAKTLYLGQTSVSKYESGKQIPEMPTLQKIADFFEISIDYLLGKT 66 Query: 78 P 78 Sbjct: 67 D 67 >gi|332667847|ref|YP_004450635.1| helix-turn-helix domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332336661|gb|AEE53762.1| helix-turn-helix domain protein [Haliscomenobacter hydrossis DSM 1100] Length = 125 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 7/120 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 K I+ R + ++Q+ + + + + Q +YEKG + IS L + Sbjct: 5 KNIKYLREVKKLTQKDIADAIEKSPQVFSQYEKGHVSPPLDVIVKISGFLNVSLQDLMFT 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKIIELVRSIVSS 129 D+ + + + + + +L + +I + +R+ EL + I Sbjct: 65 DLETGNQGISRVGDKDRITRLLEKELDRLEQLEKEIRETPGALDALREVAPELAKKIAEQ 124 >gi|315303069|ref|ZP_07873773.1| DNA-binding domain-containing protein [Listeria ivanovii FSL F6-596] gi|313628567|gb|EFR96996.1| DNA-binding domain-containing protein [Listeria ivanovii FSL F6-596] Length = 339 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/119 (12%), Positives = 39/119 (32%), Gaps = 6/119 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISE 64 + +G +++ R G+S + L + I + + E+G V + +E Sbjct: 23 ILTELGDKLKQARREKGLSLDDLQQITKIQKRYLVAIEEGNYAVMPGKFYARAFIKQYAE 82 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + FD + + +E + + V R + +++ Sbjct: 83 AVGLDSATLFDEFESEVPETPQQEVVNNEPSRVQSKRNPMPAQSVGNQVSSRNRFFDIL 141 >gi|299532103|ref|ZP_07045497.1| transcriptional regulator, XRE family protein [Comamonas testosteroni S44] gi|298719765|gb|EFI60728.1| transcriptional regulator, XRE family protein [Comamonas testosteroni S44] Length = 154 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 41/108 (37%), Gaps = 10/108 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++ +R + R LG++Q ++ + V +EKG + A +L+ +++ L Sbjct: 7 IFMSLHERFKAERERLGLTQPQIAVLTSVGKTTVINWEKGASSPTAVQLEVLAK-LGMDA 65 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + + + + +L + + VR+ Sbjct: 66 LYVVTGNYAGGVPPAPSLKDDE---------RLLLDYYREAQPAVRKA 104 >gi|288871736|ref|ZP_06410284.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479] gi|288862236|gb|EFC94534.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479] Length = 108 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGIT-----FQQVQKYEKGVNRVGASRLQHISEVL 66 D+++G I+ R + G++Q++ L + K E + S L +S + Sbjct: 29 DMDIGHNIQFLRHLAGLTQDETVAKLHLMNLNISKSTYAKLETNRMNIKVSELVALSIIF 88 Query: 67 ESPISFFFDVSPTVCSD 83 S FF S Sbjct: 89 NSNFDDFFRGLRDEFSS 105 >gi|257898371|ref|ZP_05678024.1| predicted protein [Enterococcus faecium Com15] gi|257836283|gb|EEV61357.1| predicted protein [Enterococcus faecium Com15] Length = 130 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 7/130 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + G++++ R G+ +L G++ Q+ ++EKG L+ +S L IS Sbjct: 1 MEFGEKLKKLRTSRGLGVNQLALKSGVSASQISRFEKGERKDPTLETLKKLSTALGVSIS 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIELVRSI--- 126 +F + SP + I N + + RQ++ +++ + Sbjct: 61 YFEENSPVNVNTIPKWANEEDLIELDKLLESNVDMAYGGETLTDEERQRVKDILTGLFWE 120 Query: 127 -VSSEKKYRT 135 +K Sbjct: 121 FRKEDKSKEK 130 >gi|117623603|ref|YP_852516.1| putative regulator [Escherichia coli APEC O1] gi|115512727|gb|ABJ00802.1| putative regulator [Escherichia coli APEC O1] Length = 139 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 11/136 (8%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K + ++ + R++ RR LG+SQ KL E G T ++ YE G VG + Sbjct: 5 NEKIAASRLNDKIAMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVL 64 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + L + +L F Q+ + ++ I Sbjct: 65 GKALGISPPELLFGEKDSS-----------ELWLNESQRKLLELFNQLPGSEQQRMIELF 113 Query: 123 VRSIVSSEKKYRTIEE 138 + ++ Sbjct: 114 EVRLKEIDEYVEKYLR 129 >gi|150398657|ref|YP_001329124.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150030172|gb|ABR62289.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 197 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 2/90 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D VG R+R R ++ + L G++ + + E+G A L + L + Sbjct: 11 SQLDEVVGMRVRALRAAQDLTLDDLANRAGVSRAMISRIERGEASPTAQLLARLCSALGT 70 Query: 69 PISFFF--DVSPTVCSDISSEENNVMDFIS 96 +S F VS ++ D S Sbjct: 71 TLSALFASGVSEASPLARRQDQRLWRDPES 100 >gi|71904298|ref|YP_281101.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS6180] gi|71803393|gb|AAX72746.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS6180] Length = 68 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R +SQ+ L + +G++ Q + EKG + I VL+ + F Sbjct: 5 KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLFWEV 64 Query: 78 PTV 80 Sbjct: 65 DDS 67 >gi|75759233|ref|ZP_00739334.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74493296|gb|EAO56411.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 68 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 7 NNVKQYRKSEGLSQLELAKKVNVARQTINLIENKKYNPSLALCIELAKALKTDLNSLFWE 66 Query: 77 SP 78 Sbjct: 67 GD 68 >gi|315283138|ref|ZP_07871397.1| DNA-binding protein [Listeria marthii FSL S4-120] gi|313613216|gb|EFR87101.1| DNA-binding protein [Listeria marthii FSL S4-120] Length = 423 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 41/98 (41%), Gaps = 1/98 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R ++ +++ + + I+ + E G+ L HI+ LE P Sbjct: 4 IGLRIKNIRKEKKLTLKEVAQGI-ISVPYLANIENGIKVASFETLMHIARRLEIPEEVLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 D+ E + + + + + +++ + +I + Sbjct: 63 MSEEETNKDLLREMDEIFELLVFSNPVEMEKRLNKIAE 100 >gi|312889566|ref|ZP_07749116.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311297914|gb|EFQ75033.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 83 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + I GKR++ R ++ K+ + + +Q+YE G + L +++ LE Sbjct: 9 ILIQFGKRLKYLRQSKNLTYRKMALLCNVEYADIQRYETGKVNITLLSLGELAKALEVDP 68 Query: 71 SFFFDVSPTVCS 82 + T+ Sbjct: 69 QELLNFKETLPD 80 >gi|307327702|ref|ZP_07606886.1| helix-turn-helix domain protein [Streptomyces violaceusniger Tu 4113] gi|306886600|gb|EFN17602.1| helix-turn-helix domain protein [Streptomyces violaceusniger Tu 4113] Length = 486 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 2/104 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+ R G +Q +L E T V E G R + L+H+++ L Sbjct: 27 EIGRRVLRLRTARGFTQRQLAE-PAYTAAYVSTLEAGKVRPSEAALRHLADRLGISYEEL 85 Query: 74 FDV-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 SP + + + + ++T F Q+ D R Sbjct: 86 TTGRSPRDATRLRAAVTDARRALATGAAEDAAELFEQVRDEAER 129 >gi|295102486|emb|CBL00031.1| Helix-turn-helix [Faecalibacterium prausnitzii L2-6] Length = 107 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 29/82 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+ R G+S + +G ++ E G + +I E FF+ Sbjct: 12 KRLTELRTQKGVSARDMSLSIGQNPGYIRAIESGTAFPTMANFFYICEYFNITPQEFFNF 71 Query: 77 SPTVCSDISSEENNVMDFISTP 98 + +++ + + F + Sbjct: 72 GEETSNGMNALVDQLKQFDAEQ 93 >gi|257871444|ref|ZP_05651097.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257805608|gb|EEV34430.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 121 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 28/61 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ R+ + +Q+++ + LGIT +E N + ++E+ + Sbjct: 12 MLGERLKALRIGMNQTQQQIADHLGITRAAYSHFENDRNEPDGETIVKLAELFHVSTDYL 71 Query: 74 F 74 Sbjct: 72 L 72 >gi|256843482|ref|ZP_05548970.1| predicted protein [Lactobacillus crispatus 125-2-CHN] gi|262046668|ref|ZP_06019629.1| predicted protein [Lactobacillus crispatus MV-3A-US] gi|256614902|gb|EEU20103.1| predicted protein [Lactobacillus crispatus 125-2-CHN] gi|260573117|gb|EEX29676.1| predicted protein [Lactobacillus crispatus MV-3A-US] Length = 117 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 4/114 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R +G S+++ +GI + YE+G S + +E L + + + Sbjct: 7 RLINARKAMGWSRKRAVSEIGIPYPTYSNYEQGKREPDISTIATFAEKLNTSTDYLLGRT 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVRSIVSSE 130 ++ E D + R+F D + + ++++ I + + Sbjct: 67 NNPSPSSTNSEITDSDL---NKMIDNARFFDGKPIDDHDKDLVRDILKRIYNEK 117 >gi|256394502|ref|YP_003116066.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360728|gb|ACU74225.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 65 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G+SQ+ LGE LG++ Q V E+ I+ + + F V Sbjct: 5 MRALRQGKGLSQQDLGEALGVSRQTVNAIEQSRYDPSLPLAIRIARYFGTTVEGMFHVDG 64 >gi|269797446|ref|YP_003311346.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269094075|gb|ACZ24066.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 123 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 51/118 (43%), Gaps = 2/118 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 G +I+ R+ M+ E++G +G++ Q + KYE + + + +++ ++++ + Sbjct: 6 GDKIKNLRIQNKMTLEEVGNRIGVSKQTLYKYENNIITNIPSDKIEGLAKIFNVSPALIM 65 Query: 75 DVSPTVCS-DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 T +E +++ T G ++ + + +K +E + + K Sbjct: 66 GWDDTPKEYYKDAEAAEFTEYLRTRPGARMLFSAAKDISKEDMEKAVEYIELLKLKHK 123 >gi|255316687|ref|ZP_05358270.1| hypothetical protein CdifQCD-7_20172 [Clostridium difficile QCD-76w55] Length = 114 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 9/110 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECL------GITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G+R + R +G++QE+L E + +YE + S L + Sbjct: 5 GERFKGLRKEMGLTQEELVEKFNKLNDTHFNKSTISQYENNKRKPELSILYKWANFYGVS 64 Query: 70 ISFFFDVSPTVCSDISSEENNV---MDFISTPDGLQLNRYFIQIDDVKVR 116 + F S ++ + + + +S D ++ +I D+ ++ Sbjct: 65 LDFILGRSEIKSLELEDDMKAIKIAYEKMSLKDRAKMMFLLKEIFDINLK 114 >gi|217961401|ref|YP_002339969.1| prophage LambdaBa02, repressor protein [Bacillus cereus AH187] gi|229140647|ref|ZP_04269198.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] gi|217066800|gb|ACJ81050.1| prophage LambdaBa02, repressor protein [Bacillus cereus AH187] gi|228642820|gb|EEK99100.1| Transcriptional regulator, MerR [Bacillus cereus BDRD-ST26] Length = 114 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 30/80 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ R ++Q + GE + ++ QV E N+ L I+ L + Sbjct: 5 GENLKKFRASRSLTQSEFGEKVQLSRSQVGNLEINYNQPDLDTLDRIATYLGISVDALMG 64 Query: 76 VSPTVCSDISSEENNVMDFI 95 + T + + + + Sbjct: 65 RTSTPHEKNIANALDEIQTV 84 >gi|170736907|ref|YP_001778167.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169819095|gb|ACA93677.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 203 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P I + + + ++ DG R + ID Sbjct: 86 S-QPKTPETIRVDGPHDIPTLAGHDGRYQLRVWGPID 121 >gi|116511497|ref|YP_808713.1| XRE family transcriptional regulator [Lactococcus lactis subsp. cremoris SK11] gi|116107151|gb|ABJ72291.1| Transcriptional regulator, xre family [Lactococcus lactis subsp. cremoris SK11] Length = 85 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 IR R+ +G++Q +L E L + Q V +EKG L+ ++ + + Sbjct: 28 NIRNERLAIGLTQNQLAEQLQFSKQAVYNWEKGKCEPNIETLKALATLFNISVDKL 83 >gi|90592682|ref|YP_529597.1| hypothetical protein CDBPCV119_gp46 [Clostridium phage phi CD119] gi|71482537|gb|AAX53474.1| hypothetical protein [Clostridium phage phi CD119] Length = 72 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+L R + M+Q++ GI+ + Q YE G L IS L F +S Sbjct: 7 NIKLVRKQMNMTQKQFASLFGISERAYQYYEAGSREPNLETLILISNKLNVSTDFLLGLS 66 Query: 78 PTVCSD 83 P + Sbjct: 67 PNQNRN 72 >gi|16802791|ref|NP_464276.1| hypothetical protein lmo0749 [Listeria monocytogenes EGD-e] gi|224501947|ref|ZP_03670254.1| hypothetical protein LmonFR_05442 [Listeria monocytogenes FSL R2-561] gi|255030915|ref|ZP_05302866.1| hypothetical protein LmonL_20598 [Listeria monocytogenes LO28] gi|16410138|emb|CAC98827.1| lmo0749 [Listeria monocytogenes EGD-e] Length = 68 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R+ +SQE+L + + ++ Q + E G + I + L + F Sbjct: 5 NMKVARVEKDISQEELAKLIHVSRQTISSVEAGNYNPTLNLCIAICKALGKTLDDLFWEE 64 Query: 78 PT 79 Sbjct: 65 DD 66 >gi|312130936|ref|YP_003998276.1| helix-turN-helix domain protein [Leadbetterella byssophila DSM 17132] gi|311907482|gb|ADQ17923.1| helix-turn-helix domain protein [Leadbetterella byssophila DSM 17132] Length = 111 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 29/53 (54%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 +G RI+ R+ G+SQ+K+G+ L + + +E G ++ I ++L+ Sbjct: 55 LGGRIKAFRLTRGLSQKKMGKLLSVDGSTICSWETGQTIPYKRMIEKIVKILD 107 >gi|309776164|ref|ZP_07671155.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308916115|gb|EFP61864.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 90 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 10/86 (11%) Query: 1 MVGNKKI---PNPVDIN-------VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 M NK P P D +GK+I R+ ++Q +L G+ + E G Sbjct: 1 MESNKSTRIRPIPYDKEDKELLKEMGKKINRLRVEKNLTQNELANMAGVHKNFICIIENG 60 Query: 51 VNRVGASRLQHISEVLESPISFFFDV 76 V L HI VL++ + FF Sbjct: 61 VQNPSLLSLYHIIRVLDTSLYEFFGG 86 >gi|302340085|ref|YP_003805291.1| protein of unknown function DUF955 [Spirochaeta smaragdinae DSM 11293] gi|301637270|gb|ADK82697.1| protein of unknown function DUF955 [Spirochaeta smaragdinae DSM 11293] Length = 394 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGEC-----LGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +G+++R +R++ G S +KL + IT + KYE A L +++V + Sbjct: 1 MIGEKLRQKRIMSGWSLQKLADKLEQQGTRITRAALSKYELEKATPNALTLYALAQVFDV 60 Query: 69 PISFFFD 75 +FF Sbjct: 61 KTDYFFS 67 >gi|295098976|emb|CBK88065.1| Helix-turn-helix. [Eubacterium cylindroides T2-87] Length = 70 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 28/66 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KRIR R ++Q + + L +T + +YE + +L ++E + + + + Sbjct: 4 KRIRDLREDNDLTQADIAKYLNVTQRTYSRYENDDRAIPLEQLVKLAEYYNTSVDYLLNR 63 Query: 77 SPTVCS 82 + Sbjct: 64 TDKKEP 69 >gi|317131203|ref|YP_004090517.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469182|gb|ADU25786.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 234 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 3/106 (2%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R G+SQ+ E LGI+ + YEKG+ G + + + SP Sbjct: 12 LRKEKGISQKNAAEELGISQALLSHYEKGIRECGLEFVVRAAGYYNVSCDYLLGRSPDRN 71 Query: 82 SDISSEENNVMDFISTPDGLQ---LNRYFIQIDDVKVRQKIIELVR 124 + S E+ + + + L + I +L++ Sbjct: 72 GTMLSVEDLPEPDAAGKENVFKGSLLPTLNKKLIENSINIIYDLLQ 117 >gi|261886490|ref|ZP_06010529.1| hypothetical protein CfetvA_16566 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 248 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+ ++I+L R +Q L + G++ Q ++ YE G N+ + + L+ I+ L + Sbjct: 1 MNLAQKIKLLRSEKDWTQYDLAQNSGVSLQSIKMYEAGKNKGITTTILKKIAHALNVNVE 60 Query: 72 FFFDVS 77 FF D Sbjct: 61 FFLDSE 66 >gi|227519526|ref|ZP_03949575.1| possible transcriptional repressor [Enterococcus faecalis TX0104] gi|257090868|ref|ZP_05585229.1| predicted protein [Enterococcus faecalis CH188] gi|312902504|ref|ZP_07761710.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|227072975|gb|EEI10938.1| possible transcriptional repressor [Enterococcus faecalis TX0104] gi|256999680|gb|EEU86200.1| predicted protein [Enterococcus faecalis CH188] gi|310634174|gb|EFQ17457.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315579687|gb|EFU91878.1| helix-turn-helix protein [Enterococcus faecalis TX0630] Length = 162 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 6/122 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFFF 74 G+RI+ R+ ++QE+L G+ + KYEKG + S ++ +S+ S+ Sbjct: 17 GERIKRLRLEKNLTQEELASKFGLKRAAINKYEKGNVENMKRSVIEDMSKFFGVSPSYLM 76 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + E N +D + + + + +KI L S+++ Sbjct: 77 ALDDST--SSIEEVFNKLDPSRQEKVFNYAKAQL---NEQTSEKITMLHHKKEDSDEEII 131 Query: 135 TI 136 + Sbjct: 132 DL 133 >gi|149923376|ref|ZP_01911783.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149815790|gb|EDM75314.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 139 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 4/101 (3%) Query: 10 PVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 VD + G IR R G++QE L E ++ +++ E G L ++ L Sbjct: 18 DVDAHAFGFHIRTLRKARGLTQEVLAERARLSADTIRRLEAGSFSPSMKTLVSLARGLHL 77 Query: 69 PISFF---FDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 +S F++ E GL++ R Sbjct: 78 RLSSIMLSFELGELPIERELLEILAGRSEAEARVGLEVLRA 118 >gi|108762155|ref|YP_628901.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108466035|gb|ABF91220.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 134 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R L ++Q + E +GI + + E+G L+ + VL Sbjct: 24 IGNAVRAARQRLELTQADVAERVGIATEVYGRLERGHMLPSVRTLRKLCLVLNCSSDVLL 83 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ + +E+ ++ P+ +L R ++D ++R Sbjct: 84 GMAGVEGAPTLAEDP--PEYRERPEVRRLLRTVRKLDAPRLR 123 >gi|21228997|ref|NP_634919.1| transcriptional regulator [Methanosarcina mazei Go1] gi|20907540|gb|AAM32591.1| transcriptional regulator [Methanosarcina mazei Go1] Length = 68 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R ++QE L +G+ + + EKG I+ L++ I F Sbjct: 4 RIKELRARHDLTQEALANLVGVRRETIVFLEKGKYNPSLKLACRIARSLDTTIDELFIFE 63 Query: 78 PTVCS 82 T Sbjct: 64 DTDFE 68 >gi|13488172|ref|NP_085894.1| hypothetical protein mll9374 [Mesorhizobium loti MAFF303099] gi|14028429|dbj|BAB54981.1| mll9374 [Mesorhizobium loti MAFF303099] Length = 405 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 35/92 (38%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M ++ ++ VGKR+R R +S E L +G++ Q+ K E G + L Sbjct: 16 MDARSEVEKQINGMVGKRLREARKAKSLSLEALAGKVGMSVSQLSKLETGKAPASIAALV 75 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVM 92 L+ +F + + + + Sbjct: 76 RFGLELDRSAQYFLQSDSEMPRCLGTLVPSWD 107 >gi|326942848|gb|AEA18744.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 73 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R+R R +SQ LG+ +G + Q + E+G I+++ P+ Sbjct: 1 MKLQNRVRELRAKHRLSQGDLGKVIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVPVEE 60 Query: 73 FFDV 76 F + Sbjct: 61 IFTL 64 >gi|325000344|ref|ZP_08121456.1| XRE family transcriptional regulator [Pseudonocardia sp. P1] Length = 196 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R+ R GM+ L E GI+ + + E G R L ++ + P+ Sbjct: 12 VGPRLAGLRSERGMTLADLSEATGISVSTLSRLESGGRRPTLELLLPLATAHQVPLDEL 70 >gi|319893630|ref|YP_004150505.1| Zn peptidase with DNA binding domain [Staphylococcus pseudintermedius HKU10-03] gi|317163326|gb|ADV06869.1| Zn peptidase with DNA binding domain [Staphylococcus pseudintermedius HKU10-03] Length = 395 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 35/73 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ RMI G S++ L + L ++ Q V +YE+ +++ +++ FFF Sbjct: 4 GENLKALRMIEGYSRKSLADVLQVSEQAVWQYEEQNMMPEINKIYTLAQKFNVKTKFFFS 63 Query: 76 VSPTVCSDISSEE 88 + S + + Sbjct: 64 PKQELFSITAVDT 76 >gi|311063744|ref|YP_003970469.1| transcriptional regulator [Bifidobacterium bifidum PRL2010] gi|310866063|gb|ADP35432.1| Transcriptional regulator [Bifidobacterium bifidum PRL2010] Length = 415 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R M+QE+L LG++ Q + K+E +L I ++ + Sbjct: 6 NLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLGD 65 Query: 78 PTVCSDISSEE 88 +V + Sbjct: 66 VSVSASQPDSH 76 >gi|290954828|ref|YP_003486010.1| DNA-binding protein [Streptomyces scabiei 87.22] gi|260644354|emb|CBG67439.1| putative DNA-binding protein [Streptomyces scabiei 87.22] Length = 204 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + V + +RL R G+S +L G+ Q + E+G L I+ L Sbjct: 1 MVSAGNAVVARNVRLLREQRGLSLARLAREAGLAKQTLSNLEQGTGNPTVDTLFSIATAL 60 Query: 67 ESPISFFFDVSP 78 P++ Sbjct: 61 GVPVTRLVAERE 72 >gi|257877810|ref|ZP_05657463.1| predicted protein [Enterococcus casseliflavus EC20] gi|257811976|gb|EEV40796.1| predicted protein [Enterococcus casseliflavus EC20] Length = 166 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 6/108 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R ++Q L E L ++ + + K+E G + I+E L+ + Sbjct: 12 KLKEYRKKNKLTQSMLAELLEVSDKTISKWELGATYPSKKNMIKIAEELDISLETLLLEE 71 Query: 78 PTVCSDISSEE------NNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +D + + F T N+ F I ++ +++K Sbjct: 72 TKKDNDDLKVSIKYGVISFCLIFFVTMIVTSFNQDFSTIMNLSIQEKF 119 >gi|237746811|ref|ZP_04577291.1| helix-turn-helix domain-containing protein [Oxalobacter formigenes HOxBLS] gi|229378162|gb|EEO28253.1| helix-turn-helix domain-containing protein [Oxalobacter formigenes HOxBLS] Length = 118 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 2/112 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NK+ + +GK I +RM G++QE + E L I ++ V + E+G RL Sbjct: 1 MQKNKEKT--IAQAMGKAIAQKRMEKGLTQENVAEKLNIGYEAVSRIERGTVIPNIVRLV 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 ++++ E I + ++ ++ ++ PD L + D Sbjct: 59 ELADIFECGIDELLIALSRRPINHANALLKRLEQLAEPDRELLLNVMTTLAD 110 >gi|219853774|ref|YP_002470896.1| hypothetical protein CKR_0431 [Clostridium kluyveri NBRC 12016] gi|219567498|dbj|BAH05482.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 69 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R QE L LG+T Q + E ++ +L + + F+ Sbjct: 9 IKKLRKEKNYRQEDLANALGVTRQTINAIENNKYDPTLLLAFKLANILGTTVDKLFEPD 67 >gi|160897055|ref|YP_001562637.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160362639|gb|ABX34252.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 185 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 4/108 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + G+R+R R LG+SQ + + G + Q +E+ V V A L IS I Sbjct: 5 IRVIFGERLRQERERLGLSQADMAKLGGTKMRTYQDWERDVATVSAEFLARISA-HGLDI 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 SF + + E + LQ R + + + ++ +K Sbjct: 64 SFVLTGLRSFDPNAIQHERPEPTLAAR---LQQERQRLNLSEAELARK 108 >gi|154504997|ref|ZP_02041735.1| hypothetical protein RUMGNA_02507 [Ruminococcus gnavus ATCC 29149] gi|153794880|gb|EDN77300.1| hypothetical protein RUMGNA_02507 [Ruminococcus gnavus ATCC 29149] Length = 147 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 45/115 (39%), Gaps = 7/115 (6%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R ++QE++ + + +T Q V ++E G + L+ +S+ E ++ Sbjct: 7 LKKLREKNSLTQEQMAKRVMVTRQAVSRWETGETQPNTDTLKLLSQEFEVSVNTLLGSPR 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV------KVRQKIIE-LVRSI 126 + N FIS N + + + R+ +++ LV + Sbjct: 67 QLICQCCGMPLNEDAFISREKDGSYNEDYCKWCYAEGKFVYQSRESLLDYLVEHM 121 >gi|153854035|ref|ZP_01995368.1| hypothetical protein DORLON_01359 [Dorea longicatena DSM 13814] gi|225375773|ref|ZP_03752994.1| hypothetical protein ROSEINA2194_01405 [Roseburia inulinivorans DSM 16841] gi|149753417|gb|EDM63348.1| hypothetical protein DORLON_01359 [Dorea longicatena DSM 13814] gi|225212370|gb|EEG94724.1| hypothetical protein ROSEINA2194_01405 [Roseburia inulinivorans DSM 16841] gi|291521441|emb|CBK79734.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 78 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHISEVL 66 D+++GK I+ R M+Q+++ L IT K E + AS L ++++ Sbjct: 7 DMDIGKNIQAIRYKNNMTQDQVVAKLNLMGISITKSTYAKLETNRMNIKASELVALAKLF 66 Query: 67 ESPISFFFDV 76 + I+ FF Sbjct: 67 HTDINAFFSG 76 >gi|37519836|ref|NP_923213.1| transcriptional regulator [Gloeobacter violaceus PCC 7421] gi|35210827|dbj|BAC88208.1| gll0267 [Gloeobacter violaceus PCC 7421] Length = 366 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 12/115 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECL--GITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+RI+L R G S L + + ++ Q + KYE+G G+ L +S LE + Sbjct: 1 MLGERIKLARRKAGYSLRNLADRMGGRVSAQAIGKYERGEMVPGSDNLIALSRALEVSVP 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPD----GLQLNRYFIQIDDVKVRQKIIEL 122 + D + + + L+ ++QI ++I+EL Sbjct: 61 YLLDSQGIELTGVDFRAQAGITGAERARVQTEVLEWVERYLQI------ERILEL 109 >gi|85702861|ref|ZP_01033965.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85671789|gb|EAQ26646.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 215 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R ++ +L ++ + K E G + LQ ++ L P+ Sbjct: 27 LEVAIGREVRAYRKKQNITVAELSNMTELSIGMLSKIENGNTSPSLTTLQTLARALSVPL 86 Query: 71 SFFFDVSPTVCSDI 84 + FF + Sbjct: 87 TAFFKEYEERREAV 100 >gi|150015590|ref|YP_001307844.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149902055|gb|ABR32888.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 69 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R ++Q +L + + +T Q + E G I++ E I F Sbjct: 4 RIQELRKEKKITQGELADAVNVTRQTIISLENGRYNASLILAHKIAQFFEISIEEIFIFD 63 Query: 78 PTVCS 82 + Sbjct: 64 KEDEN 68 >gi|300726245|ref|ZP_07059698.1| transcriptional regulator [Prevotella bryantii B14] gi|299776442|gb|EFI72999.1| transcriptional regulator [Prevotella bryantii B14] Length = 184 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R +L + E++ E I+ K E G RL IS+ + Sbjct: 8 IGERLRGLREVLDIPAEEVAELCEISLDHYLKIEAGEADPSVYRLSKISKRYGIDLDVLL 67 Query: 75 DVSPTVCSD 83 + Sbjct: 68 FGEEPRMNS 76 >gi|257469538|ref|ZP_05633630.1| MerR family transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|317063782|ref|ZP_07928267.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] gi|313689458|gb|EFS26293.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185] Length = 185 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 1/93 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVG I+ R+ G+ + + E I+ + + EKG + ++ I++ LE P+ Sbjct: 5 INVGAIIKRIRIEKGLLLKDVAEKCEISSSMLSQIEKGNANPSLNTIKSIAQALEIPLFK 64 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 FF + + + + +L Sbjct: 65 FFIEPEKEDITINILKRGERKIINTKKIRYELL 97 >gi|255316576|ref|ZP_05358159.1| putative regulatory protein [Clostridium difficile QCD-76w55] Length = 120 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 40/105 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKRI++ R+ G++QE + + IT + E G +V L I+ L I Sbjct: 6 KALGKRIKIARIKKGITQESIANEIDITPSHLSNVETGKTKVSLPTLIDIANALSINIDS 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + E + +++ ++ +R+ Sbjct: 66 LLCDNILNSKVVFEGEAKEVFDDCDEYEIRMLVDILKYMKETIRK 110 >gi|254510268|ref|ZP_05122335.1| Helix-turn-helix domain protein [Rhodobacteraceae bacterium KLH11] gi|221533979|gb|EEE36967.1| Helix-turn-helix domain protein [Rhodobacteraceae bacterium KLH11] Length = 147 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 4/119 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + N G+ + R G+S + L + + ++E +V A RL I+ Sbjct: 1 MKNAAAKTFGEILTDAREHKGLSLGDAAKLLSVPKTSLWRWENNETKVDAQRLVDIAAAY 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV-RQKIIELVR 124 IS F+ ++ + + + + KV R ++E++R Sbjct: 61 GLSISAMFEG---KILKAPTQTDFDRLGDVVEHIEIIVQSLNLRPNPKVLRTAVVEVLR 116 >gi|218887444|ref|YP_002436765.1| XRE family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758398|gb|ACL09297.1| transcriptional regulator, XRE family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 188 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 33/84 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R +S+E+L + G+ + + E LQ ++ L + F Sbjct: 6 LGARVRKYREDRSLSREELADAAGLKTEFIAALEDDNLYPSIGPLQKLARALNVRLGTFM 65 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 D + + +S + + D Sbjct: 66 DDAVSRDPIVSRQGDREADLTMQK 89 >gi|169344519|ref|ZP_02865488.1| transcriptional regulator [Clostridium perfringens C str. JGS1495] gi|169297439|gb|EDS79548.1| transcriptional regulator [Clostridium perfringens C str. JGS1495] Length = 141 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++ R +SQE+L + L I+ Q + K E G L + ++ + Sbjct: 5 NKLKELRKEKNISQEQLAKELNISRQAISKLESGKAYPDIDNLILLRKIFGVSLD 59 >gi|103486182|ref|YP_615743.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976259|gb|ABF52410.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 63 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R SQ+ L + L ++ Q V E G I+++ PI F Sbjct: 3 NRLKVLRAERDWSQQDLADRLEVSRQSVNAIETGKYDPSLPLAFRIADLFGLPIEAIF 60 >gi|163938382|ref|YP_001643266.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229056228|ref|ZP_04195651.1| hypothetical protein bcere0026_3600 [Bacillus cereus AH603] gi|163860579|gb|ABY41638.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228721115|gb|EEL72650.1| hypothetical protein bcere0026_3600 [Bacillus cereus AH603] Length = 64 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 3 NQIYELRTANNISQGALADKCNVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60 >gi|148252332|ref|YP_001236917.1| anaerobic benzoate catabolism transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404505|gb|ABQ33011.1| transcriptional regulator, XRE family with shikimate kinase activity [Bradyrhizobium sp. BTAi1] Length = 306 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 10/113 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R + GMS++ L + GI+ + + + E G V L+ I+ + +P+ Sbjct: 23 QLGQRVRRMRGLAGMSRKVLAQVSGISERYIAQLESGKGNVSIVLLRRIANAINAPLDDI 82 Query: 74 FDVSPTVCS----------DISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 S S+ V D ++ L R F I + +R Sbjct: 83 IPGSEPSPDWPVIRDLLKKASPSQIAEVKDLLAGGASAPLRRSFSGIALIGLR 135 >gi|30018872|ref|NP_830503.1| PbsX family transcriptional regulator [Bacillus cereus ATCC 14579] gi|30260845|ref|NP_843222.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|42779842|ref|NP_977089.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47525976|ref|YP_017325.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183686|ref|YP_026938.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49476873|ref|YP_034951.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144616|ref|YP_082212.1| transcriptional regulator [Bacillus cereus E33L] gi|65318122|ref|ZP_00391081.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|118476376|ref|YP_893527.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|163938619|ref|YP_001643503.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|165872916|ref|ZP_02217540.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167635166|ref|ZP_02393482.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641831|ref|ZP_02400071.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170689445|ref|ZP_02880636.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170709002|ref|ZP_02899433.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177652794|ref|ZP_02935167.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190568571|ref|ZP_03021477.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196042062|ref|ZP_03109347.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196047106|ref|ZP_03114324.1| DNA-binding protein [Bacillus cereus 03BB108] gi|206977794|ref|ZP_03238684.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217958280|ref|YP_002336826.1| DNA-binding protein [Bacillus cereus AH187] gi|218901889|ref|YP_002449723.1| DNA-binding protein [Bacillus cereus AH820] gi|222094450|ref|YP_002528509.1| transcriptional regulator [Bacillus cereus Q1] gi|225862672|ref|YP_002748050.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227816434|ref|YP_002816443.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228906448|ref|ZP_04070329.1| Transcriptional regulator [Bacillus thuringiensis IBL 200] gi|229010123|ref|ZP_04167337.1| Transcriptional regulator [Bacillus mycoides DSM 2048] gi|229056462|ref|ZP_04195875.1| Transcriptional regulator [Bacillus cereus AH603] gi|229089756|ref|ZP_04221016.1| Transcriptional regulator [Bacillus cereus Rock3-42] gi|229108302|ref|ZP_04237921.1| Transcriptional regulator [Bacillus cereus Rock1-15] gi|229120344|ref|ZP_04249594.1| Transcriptional regulator [Bacillus cereus 95/8201] gi|229126121|ref|ZP_04255142.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] gi|229131641|ref|ZP_04260523.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] gi|229137494|ref|ZP_04266105.1| Transcriptional regulator [Bacillus cereus BDRD-ST26] gi|229143419|ref|ZP_04271848.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|229165635|ref|ZP_04293408.1| Transcriptional regulator [Bacillus cereus AH621] gi|229183027|ref|ZP_04310259.1| Transcriptional regulator [Bacillus cereus BGSC 6E1] gi|229195018|ref|ZP_04321795.1| Transcriptional regulator [Bacillus cereus m1293] gi|229602348|ref|YP_002865290.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254684228|ref|ZP_05148088.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254725890|ref|ZP_05187672.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254734410|ref|ZP_05192123.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254742096|ref|ZP_05199783.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755782|ref|ZP_05207815.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254762352|ref|ZP_05214196.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|296501446|ref|YP_003663146.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|301052344|ref|YP_003790555.1| transcriptional regulator [Bacillus anthracis CI] gi|29894414|gb|AAP07704.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC 14579] gi|30254294|gb|AAP24708.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|42735759|gb|AAS39697.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47501124|gb|AAT29800.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177613|gb|AAT52989.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49328429|gb|AAT59075.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978085|gb|AAU19635.1| transcriptional regulator [Bacillus cereus E33L] gi|118415601|gb|ABK84020.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|163860816|gb|ABY41875.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|164711329|gb|EDR16882.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510179|gb|EDR85585.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529425|gb|EDR92176.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170126104|gb|EDS95000.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170666607|gb|EDT17379.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172081828|gb|EDT66897.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190560365|gb|EDV14344.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196022087|gb|EDX60776.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196027087|gb|EDX65709.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|206743991|gb|EDZ55408.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217065587|gb|ACJ79837.1| DNA-binding protein [Bacillus cereus AH187] gi|218536097|gb|ACK88495.1| DNA-binding protein [Bacillus cereus AH820] gi|221238507|gb|ACM11217.1| transcriptional regulator [Bacillus cereus Q1] gi|225788360|gb|ACO28577.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227005797|gb|ACP15540.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228588453|gb|EEK46494.1| Transcriptional regulator [Bacillus cereus m1293] gi|228600484|gb|EEK58072.1| Transcriptional regulator [Bacillus cereus BGSC 6E1] gi|228617870|gb|EEK74922.1| Transcriptional regulator [Bacillus cereus AH621] gi|228640047|gb|EEK96448.1| Transcriptional regulator [Bacillus cereus BDRD-ST24] gi|228646052|gb|EEL02275.1| Transcriptional regulator [Bacillus cereus BDRD-ST26] gi|228651867|gb|EEL07822.1| Transcriptional regulator [Bacillus cereus BDRD-ST196] gi|228657328|gb|EEL13145.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] gi|228663154|gb|EEL18744.1| Transcriptional regulator [Bacillus cereus 95/8201] gi|228675139|gb|EEL30364.1| Transcriptional regulator [Bacillus cereus Rock1-15] gi|228693564|gb|EEL47267.1| Transcriptional regulator [Bacillus cereus Rock3-42] gi|228720936|gb|EEL72485.1| Transcriptional regulator [Bacillus cereus AH603] gi|228751256|gb|EEM01068.1| Transcriptional regulator [Bacillus mycoides DSM 2048] gi|228853175|gb|EEM97951.1| Transcriptional regulator [Bacillus thuringiensis IBL 200] gi|229266756|gb|ACQ48393.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|296322498|gb|ADH05426.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|300374513|gb|ADK03417.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 66 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R+ L ++Q++L E +G+T Q + EKG I ++ ++ F Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLFWE 63 Query: 77 SPT 79 Sbjct: 64 EKE 66 >gi|332523455|ref|ZP_08399707.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] gi|332314719|gb|EGJ27704.1| DNA-binding helix-turn-helix protein [Streptococcus porcinus str. Jelinkova 176] Length = 359 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 8/117 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I L R LGM+QEKL + L +T + K+E + L ++++ + + Sbjct: 1 MIGDTIFLERTRLGMTQEKLSDYLHLTKATISKWENNQAKPDIDYLILLAKLFDMTLDDL 60 Query: 74 F-------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 D T + E+ N + + ++ I+D K +++LV Sbjct: 61 VGFQKTLTDFERTELFNQLKEKINQTEELEFFQEIEELSKHY-INDFKTLLMLVQLV 116 >gi|300173806|ref|YP_003772972.1| helix-turn-helix domain-containing protein [Leuconostoc gasicomitatum LMG 18811] gi|299888185|emb|CBL92153.1| helix-turn-helix domain protein [Leuconostoc gasicomitatum LMG 18811] Length = 176 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 36/78 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R+ +Q+ + + LG+T Q VQ+YE ++ + + +++ + P+S+ + Sbjct: 7 SRLKSERLKKKKTQKDIADFLGMTKQAVQRYESSLSIPKLATWEKLADYFDVPVSYLMGI 66 Query: 77 SPTVCSDISSEENNVMDF 94 S + D Sbjct: 67 DEMRKRSKDSIQRMKRDH 84 >gi|290889566|ref|ZP_06552656.1| hypothetical protein AWRIB429_0046 [Oenococcus oeni AWRIB429] gi|290480764|gb|EFD89398.1| hypothetical protein AWRIB429_0046 [Oenococcus oeni AWRIB429] Length = 198 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I +R LGM+Q+++ E L ++ Q + +EKG N L +S++ + + Sbjct: 13 ISSKRRELGMTQDQVAELLYVSRQALSNWEKGKNYPDLDTLVELSKIYDLSLDVLIKGDK 72 Query: 79 TVCSDISSEENN 90 V + + + Sbjct: 73 KVMKKVQEDSQD 84 >gi|259415826|ref|ZP_05739746.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] gi|259347265|gb|EEW59042.1| transcriptional regulator, XRE family [Silicibacter sp. TrichCH4B] Length = 443 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 31/79 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR++LG+ Q L GI+ + E R+G L +++VL S Sbjct: 4 DSLTGSRIRERRLMLGLRQADLARDAGISASYLNLIEHNRRRIGGKLLVTLAQVLNVEPS 63 Query: 72 FFFDVSPTVCSDISSEENN 90 + E Sbjct: 64 LLTEGVEATLVASLREAAA 82 >gi|271966468|ref|YP_003340664.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270509643|gb|ACZ87921.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 192 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 9/77 (11%), Positives = 28/77 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R + G++ +++ ++ + E+G L I++ L ++ Sbjct: 6 ALGLRVQELRHLRGLTLQQMAGAADVSVSMLSSVERGQKAPTVVVLGRIADGLGVSLAEL 65 Query: 74 FDVSPTVCSDISSEENN 90 + + Sbjct: 66 VAEPEDRRVIVRRAADQ 82 >gi|291300634|ref|YP_003511912.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569854|gb|ADD42819.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 168 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/107 (14%), Positives = 41/107 (38%), Gaps = 2/107 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ--VQKYEKGVNRVGASRLQHISEVLESPI 70 +G R+R R+ G+S + + + G ++ + YE+G + +RL ++ P+ Sbjct: 9 KFLGNRLRDIRIQQGLSLQGVEDKSGGKWKAVVIGSYERGDRAITVARLSELATFYRVPV 68 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + + S+ + + L ++ R+ Sbjct: 69 AELLPDGAPLPIEPGSKLTLDLAALYDHSSPDLAHVARYARGIQQRR 115 >gi|149003138|ref|ZP_01828047.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP14-BS69] gi|237651078|ref|ZP_04525330.1| Hypothetical phage associated protein SpyM3_0964 [Streptococcus pneumoniae CCRI 1974] gi|237821191|ref|ZP_04597036.1| Hypothetical phage associated protein SpyM3_0964 [Streptococcus pneumoniae CCRI 1974M2] gi|147758879|gb|EDK65875.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP14-BS69] Length = 207 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 31/79 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +SQ+++ E LG + + Q+ E G +++ + Q +++ + + Sbjct: 2 NRLKELRQKNELSQKEIAEILGFSLRSFQRMENGESQIKPEKAQQLADFFGVSVGYLLGY 61 Query: 77 SPTVCSDISSEENNVMDFI 95 + I Sbjct: 62 IDDSEIYDDEVVIEPEEGI 80 >gi|94984444|ref|YP_603808.1| XRE family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554725|gb|ABF44639.1| transcriptional regulator, XRE family [Deinococcus geothermalis DSM 11300] Length = 140 Score = 43.7 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 6/116 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + V + + +R+R R G+ + + E GI+ + E+G LQ Sbjct: 1 MRGNAAAEEVKMKLHERLRELRSERGLRLKDVAETAGISVPYLSDLERGRTNPSLETLQT 60 Query: 62 ISEVLESPISFFFDVSP------TVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 ++ + + + + + R +I+ Sbjct: 61 LAGAYSITVHDLLEGVEFYGDSTEGALPKGLADLVADPLLGSQITPDWVRTLSRIE 116 >gi|329890268|ref|ZP_08268611.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328845569|gb|EGF95133.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 516 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R R G + E+ L ++ + + E A L ++ + S Sbjct: 5 LYLGTKVRKLREARGWTLEQCAGRLALSPSYLSQIETNQRPATARVLIALTRAFDVDASL 64 Query: 73 F-FDVSPTVCSDISSEENN 90 F D + +D+ + Sbjct: 65 FDLDGDARLIADLREATTD 83 >gi|322378129|ref|ZP_08052615.1| DNA-binding protein [Streptococcus sp. M334] gi|321280966|gb|EFX57980.1| DNA-binding protein [Streptococcus sp. M334] Length = 307 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEK-LGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + I VGKRIR+ R + +++E + IT +Q+ + E G + S++++I+ L Sbjct: 2 DIKIEVGKRIRMLREMKHITRETLCDDETEITVRQLARIESGQSSPSLSKVEYIAYKLGC 61 Query: 69 PISFFFDVS 77 PIS D+ Sbjct: 62 PISHIVDMD 70 >gi|316932268|ref|YP_004107250.1| helix-turn-helix domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599982|gb|ADU42517.1| helix-turn-helix domain protein [Rhodopseudomonas palustris DX-1] Length = 72 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 23/64 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ R G++QE++ G + Q + E+G L +S+ L Sbjct: 7 VGRNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELSQALGVSHVELV 66 Query: 75 DVSP 78 Sbjct: 67 QPDD 70 >gi|282851522|ref|ZP_06260887.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri 224-1] gi|282557490|gb|EFB63087.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus gasseri 224-1] Length = 114 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 26/75 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R +S+ + + LG++ Q+ +E G L I+++ + Sbjct: 6 NRLIALREENNLSKTAVAKKLGLSVQRYANWEYGTREPDLENLAAIAKLYGVSTDYLTGQ 65 Query: 77 SPTVCSDISSEENNV 91 + E + Sbjct: 66 NDDRDKQSVDLEKDP 80 >gi|260682992|ref|YP_003214277.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260686590|ref|YP_003217723.1| putative phage regulatory protein [Clostridium difficile R20291] gi|260209155|emb|CBA62369.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260212606|emb|CBE03618.1| putative phage regulatory protein [Clostridium difficile R20291] Length = 135 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 4/110 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R ++Q KL + L + KYE G + L I++ + Sbjct: 7 LGKRIAYLRNSKKLTQRKLMDILKFEN--LGKYETGDRKPNCDILMSIADYFNVTTDWLL 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK--IIEL 122 V + S +E+ T D + + + Q+++ + I+EL Sbjct: 65 YGKEKVNVNSSVKEDKEDYLHVTNDEMMILNLYRQLNERDKIKIEGILEL 114 >gi|259047659|ref|ZP_05738060.1| transcriptional regulator [Granulicatella adiacens ATCC 49175] gi|259035850|gb|EEW37105.1| transcriptional regulator [Granulicatella adiacens ATCC 49175] Length = 138 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 27/74 (36%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 + R + SQE++ E + I+ Q K+E G + +++V I Sbjct: 1 MLRKLKDFSQEEIAEKIDISRQAYGKWESGETIPDIEKCAILADVYGVTIDSLIREHRVE 60 Query: 81 CSDISSEENNVMDF 94 + ++ F Sbjct: 61 NTPLAPTPAGKHIF 74 >gi|302534578|ref|ZP_07286920.1| conserved hypothetical protein [Streptomyces sp. C] gi|302443473|gb|EFL15289.1| conserved hypothetical protein [Streptomyces sp. C] Length = 404 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 3/93 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ RR G SQE +G+ V ++E+G ++E+L ++ + Sbjct: 3 LKERRKARGYSQESFAVAVGVDRTTVGRWERGETEPQPPLRPRLAELLGLDLAG--LGAL 60 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRY-FIQI 110 ++ E +D +++ G + R F++I Sbjct: 61 LSPQAVTQEAEGHLDDLTSDSGDDMIRRDFLRI 93 >gi|253576963|ref|ZP_04854287.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843694|gb|EES71718.1| predicted protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 115 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 13/112 (11%), Positives = 44/112 (39%), Gaps = 9/112 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+++R R ++Q++ +G++ + E+GV + + + +++ Sbjct: 1 MNLGEKVRTIRKSHELNQKEFALKIGVSQGTLSDIERGVCLPSCETIIALKNTFQCDLNW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 S + + + L+L + + + ++ E++ Sbjct: 61 LLSDYDESFSQTPT--------YISSEELKLLTSIRALP-AQEKNELYEIIE 103 >gi|238923321|ref|YP_002936836.1| hypothetical protein EUBREC_0938 [Eubacterium rectale ATCC 33656] gi|238874995|gb|ACR74702.1| Hypothetical protein EUBREC_0938 [Eubacterium rectale ATCC 33656] Length = 112 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 37/78 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++GK IR R+ ++QE+L E + + + E+G +++ S L I L+ + Sbjct: 8 KHIGKIIRFYRLKNNLTQEQLSEYADCSCGFIGQIERGESKISLSVLSKIINTLKIDANE 67 Query: 73 FFDVSPTVCSDISSEENN 90 F + T S+ +N Sbjct: 68 LFWDTDTHTSESQQLDNQ 85 >gi|227517446|ref|ZP_03947495.1| conserved hypothetical protein [Enterococcus faecalis TX0104] gi|227554699|ref|ZP_03984746.1| conserved hypothetical protein [Enterococcus faecalis HH22] gi|307283922|ref|ZP_07564094.1| transcriptional activator, Rgg/GadR/MutR family protein [Enterococcus faecalis TX0860] gi|307286527|ref|ZP_07566623.1| transcriptional activator, Rgg/GadR/MutR family protein [Enterococcus faecalis TX0109] gi|227075051|gb|EEI13014.1| conserved hypothetical protein [Enterococcus faecalis TX0104] gi|227176199|gb|EEI57171.1| conserved hypothetical protein [Enterococcus faecalis HH22] gi|306502349|gb|EFM71628.1| transcriptional activator, Rgg/GadR/MutR family protein [Enterococcus faecalis TX0109] gi|306503516|gb|EFM72764.1| transcriptional activator, Rgg/GadR/MutR family protein [Enterococcus faecalis TX0860] gi|315165974|gb|EFU09991.1| transcriptional activator, Rgg/GadR/MutR family protein [Enterococcus faecalis TX1302] gi|315574870|gb|EFU87061.1| transcriptional activator, Rgg/GadR/MutR family protein [Enterococcus faecalis TX0309B] gi|315582317|gb|EFU94508.1| transcriptional activator, Rgg/GadR/MutR family protein [Enterococcus faecalis TX0309A] Length = 289 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK++++ R G++Q ++ + + ++ K EKG +++ A L I + + + FF Sbjct: 4 IGKQLKIERKNRGLTQSEMCQPI-LSTSYYAKVEKGYHKIAAEDLLSILKQNKIDVIDFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S E + S Q ++ Sbjct: 63 ISLEKKGATDISYEQLIHLAWSEAHLKQDIPKLHRLK 99 >gi|218677991|ref|ZP_03525888.1| XRE family transcriptional regulator [Rhizobium etli CIAT 894] Length = 182 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 14/113 (12%), Positives = 30/113 (26%), Gaps = 4/113 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R + +L GI+ + E+ L + E L + + FF Sbjct: 4 IGSKLHELRRRRNLGVRELAARSGISHSTISLIERDKMSPSIDTLSAVLEALGTTMPGFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 G + I ++++ L Sbjct: 64 SD----LQSSLPYSPFYSAVDLVEIGKVDAISYRVIGLDHPNRQLLMLHERYA 112 >gi|147724743|gb|ABQ45979.1| repressor [Linear cloning vector pJAZZ-OC] Length = 198 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 34/70 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ RR+ L ++ +++ E +GI+ VQ E+G +++ L P+ + Sbjct: 5 GERLKARRLELKLTLKQVAEAVGISLPGVQNLERGDVMPSLEIGLSLAKCLRKPVQWILY 64 Query: 76 VSPTVCSDIS 85 + + + Sbjct: 65 GTESDPDRVP 74 >gi|158321370|ref|YP_001513877.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158141569|gb|ABW19881.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 78 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++QE+LG +G++ Q + E IS+V E I F Sbjct: 3 NRLKALRESFELTQEQLGALVGVSRQAINSIETEKFEPSIWLAYDISKVFECSIEDIFLF 62 Query: 77 SPTVCSDISSEEN 89 + + + Sbjct: 63 EESERKSRAQQSR 75 >gi|146302726|ref|YP_001197317.1| hypothetical protein Fjoh_4999 [Flavobacterium johnsoniae UW101] gi|146157144|gb|ABQ07998.1| hypothetical protein Fjoh_4999 [Flavobacterium johnsoniae UW101] Length = 133 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 51/130 (39%), Gaps = 4/130 (3%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I+ G+ ++ R +LG+ QE L + Q+ + + + L+ IS L+ PI Sbjct: 5 IHQGRNVKRFREMLGIKQEALAYDLGEDWNQKKISMLEQKEVIEDNLLKQISNSLKIPIE 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 F + +I + N D+ + N I ++ + I L ++ + Sbjct: 65 AFQNFDEEQAVNIIASTFNAHDYATGLIINNYNPIEKII---QLHDEKIALYERMLKEKD 121 Query: 132 KYRTIEEECM 141 + E+ + Sbjct: 122 EMMAKLEKLI 131 >gi|146297530|ref|YP_001181301.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411106|gb|ABP68110.1| helix-turn-helix domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 373 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 36/83 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I + ++L + +G+T Q + KY +G + + +L I+E P+ +F Sbjct: 7 IGNNIHALMKKQNVKIKQLADLIGVTRQTMTKYLEGEVIIDSEKLFKIAEFFGKPLDYFL 66 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 + + + + IST Sbjct: 67 ENKHEEMAFLFRAHVLNKESIST 89 >gi|323706165|ref|ZP_08117733.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534458|gb|EGB24241.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 118 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 33/86 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG RIR R +G+++E+ E +G++ + E+ + I++ L + Sbjct: 12 KKVGMRIRAERERIGLTREQFAEAVGVSAMYIGHIERAQRVMSLKTFVRIAKSLHVSTDY 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 + + + + + + Sbjct: 72 LLFGIGEAENKNNDGKEDALIELLNK 97 >gi|295110625|emb|CBL24578.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 74 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RIR R SQE + L I + YE+G R+ + ++E +++ Sbjct: 5 NRIRSLREDNDYSQEDIASYLHIGQRTYSDYERGKTRIPLDSMIMLAEFYNVDMNYI 61 >gi|261419494|ref|YP_003253176.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297530533|ref|YP_003671808.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|319766311|ref|YP_004131812.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261375951|gb|ACX78694.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61] gi|297253785|gb|ADI27231.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] gi|317111177|gb|ADU93669.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC52] Length = 297 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +GKR+R R MS ++L E I + + E+G + +E + Sbjct: 3 ELGKRLREAREEKKMSLDELQEMTKIQKRYLIGIEEGNYAIMPGNFYVRAFIRQYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEE 88 F+ ++ Sbjct: 63 LDPDELFEQYKQDIPQSYQDD 83 >gi|229032669|ref|ZP_04188632.1| hypothetical protein bcere0028_47050 [Bacillus cereus AH1271] gi|228728668|gb|EEL79681.1| hypothetical protein bcere0028_47050 [Bacillus cereus AH1271] Length = 79 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ + Sbjct: 6 DMKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVTVE 65 Query: 72 FFFDVSPTVCSDIS 85 F + D Sbjct: 66 EIFTLVEGEEDDEE 79 >gi|281420953|ref|ZP_06251952.1| DNA-binding protein [Prevotella copri DSM 18205] gi|281404871|gb|EFB35551.1| DNA-binding protein [Prevotella copri DSM 18205] Length = 184 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 25/71 (35%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R++ R +L + E++ E I+ K E G RL IS+ + Sbjct: 6 KQIGERLKGLREVLNIPAEEIAELCEISLDHYLKIESGEADPSVYRLSKISKRYGIDLDV 65 Query: 73 FFDVSPTVCSD 83 Sbjct: 66 LLFGEEPRMKG 76 >gi|206972608|ref|ZP_03233551.1| DNA-binding protein [Bacillus cereus AH1134] gi|206732510|gb|EDZ49689.1| DNA-binding protein [Bacillus cereus AH1134] Length = 67 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RIR R + G +QE + LG++ + + E+G + +++ L I Sbjct: 7 GRRIRAFRKLKGYTQEGFAKALGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSIEELM 65 >gi|187921387|ref|YP_001890419.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187719825|gb|ACD21048.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 210 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +P ++G+R+R R ++ E G++ + K E + LQ I Sbjct: 7 KSADPSITDLGRRVRAARQAQDLTLETASRLCGVSRSTLSKVENSLMSPTFDVLQKIVLG 66 Query: 66 LESPISFFFDVSP 78 L+ I F +P Sbjct: 67 LKIEIGELFGSTP 79 >gi|219667096|ref|YP_002457531.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537356|gb|ACL19095.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 179 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 6/120 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R +S + + E +T + + E+ + L+ I+ L PIS FF Sbjct: 4 LGSAIRFMRKNQKLSLKDVAEKTELTISHLSQIERNLASPSLITLEKIASALGYPISSFF 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + I +E + L I++V R ++ + + ++ Sbjct: 64 VNPQFTSTHIPAEAQRTIQINPGMTLRFL------INNVGQRNQLGAYIAEVADLSEEII 117 >gi|15894128|ref|NP_347477.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15023733|gb|AAK78817.1|AE007599_13 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325508255|gb|ADZ19891.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 179 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 32/65 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++I+ R+ ++QE+L ++ + + E+ + + L I + L + + Sbjct: 1 MDIGEKIKRLRIEKQLTQEELANRCELSKGFISQIERNLTSPSIATLTDILDALGTNLPD 60 Query: 73 FFDVS 77 FF Sbjct: 61 FFKED 65 >gi|284045488|ref|YP_003395828.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949709|gb|ADB52453.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 84 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R +SQE L G+ + + + E+G AS + +++ L I + Sbjct: 17 IRQLRRDRELSQEALANAAGVHPKHLSEIERGNKDPRASTVARLADALGVSIGELYGQPG 76 Query: 79 TVCSDIS 85 S Sbjct: 77 GDEPGAS 83 >gi|270292315|ref|ZP_06198526.1| putative transcriptional repressor [Streptococcus sp. M143] gi|270278294|gb|EFA24140.1| putative transcriptional repressor [Streptococcus sp. M143] Length = 69 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++L R+ ++Q L E +G+T Q + E G S Q I L + F Sbjct: 6 KLKLARVERDLTQGDLAEAVGVTRQTIGLIEAGKYNPSLSLCQSICRRLGKTLDQLFWEE 65 Query: 78 PTVC 81 Sbjct: 66 EDEK 69 >gi|302520734|ref|ZP_07273076.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302429629|gb|EFL01445.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 241 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 3/81 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + +D V KR+R R+ G S E+L ++ + + E G R+ L Sbjct: 1 MTQDD---DDLDSLVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLV 57 Query: 61 HISEVLESPISFFFDVSPTVC 81 ++ L++ + + + Sbjct: 58 TLARALDTSLDQLVETTSDDV 78 >gi|229100270|ref|ZP_04231161.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] gi|229103092|ref|ZP_04233779.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-28] gi|229119062|ref|ZP_04248402.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] gi|228664391|gb|EEL19892.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-3] gi|228680281|gb|EEL34471.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-28] gi|228683165|gb|EEL37152.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-29] Length = 292 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R +SQ +L + + Q+ K EKG+ + L +SE L ++ F Sbjct: 6 LGIIIKELRKKKNISQSELCRGI-CSQSQISKIEKGIIYPSSILLYQLSERLGVDPNYIF 64 Query: 75 DVSPTVCSDISSEENN-VMDFISTPDGLQLNRYFIQIDDVK 114 ++ + D I +L + + Sbjct: 65 ALTQNKKLKYVENVKYVIRDCIKQKQYEELYEIVKKEKNEN 105 >gi|227878317|ref|ZP_03996275.1| XRE family transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256849586|ref|ZP_05555018.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|262046253|ref|ZP_06019216.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|312984040|ref|ZP_07791388.1| helix-turn-helix domain-containing protein [Lactobacillus crispatus CTV-05] gi|227862086|gb|EEJ69647.1| XRE family transcriptional regulator [Lactobacillus crispatus JV-V01] gi|256713702|gb|EEU28691.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|260573583|gb|EEX30140.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|310894542|gb|EFQ43616.1| helix-turn-helix domain-containing protein [Lactobacillus crispatus CTV-05] Length = 269 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 52/139 (37%), Gaps = 11/139 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G++QE+ + ++ K E+G++ + A L I + + Sbjct: 1 MEINTALKKARQSRGLTQEQFVAGI-LSPAHYSKIERGLHEISAKDLMAILQKNKISFDE 59 Query: 73 FF-------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 FF D DF L Q+ + + +L+ + Sbjct: 60 FFKQNSVAQADDENNLGDQLQTAYYNQDFNQVRK---LVTEIQQLPHHDLLKIKAKLILT 116 Query: 126 IVSSEKKYRTIEEECMVEQ 144 ++ ++K+ ++ ++++ Sbjct: 117 LLEGKRKFDVKDKNIVLQR 135 >gi|300778642|ref|ZP_07088500.1| helix-turn-helix domain protein [Chryseobacterium gleum ATCC 35910] gi|300504152|gb|EFK35292.1| helix-turn-helix domain protein [Chryseobacterium gleum ATCC 35910] Length = 125 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 12/121 (9%), Positives = 43/121 (35%), Gaps = 2/121 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++R R G +Q+++ + L + E G ++ + +++VL+ + + Sbjct: 4 EKLRTLRKQKGYTQQQIADLLATDVSNYSRKENGDVKIFDDEWEKLAKVLDVSVEDIKED 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQ--LNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + G+ ++ + + + E ++++ +K + Sbjct: 64 KEPNVVQKNENITFNDTSSFHQSGIYNCNVPNYLLENQQEYINLLKEQIKALKEENEKLK 123 Query: 135 T 135 Sbjct: 124 K 124 >gi|242277630|ref|YP_002989759.1| XRE family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242120524|gb|ACS78220.1| transcriptional regulator, XRE family [Desulfovibrio salexigens DSM 2638] Length = 188 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 28/82 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RI+ R G+S E+ G+ ++ E+ L I+ L + F Sbjct: 6 VGHRIKTFREKQGLSLEEFSSRTGLGVDFLEAVEEKEKYPSLGPLLKIARALGVRLGTFL 65 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 D + I +F Sbjct: 66 DDQVSKDPLIVKLGERKEEFAM 87 >gi|170024535|ref|YP_001721040.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169751069|gb|ACA68587.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis YPIII] Length = 130 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G R+R R LG+SQ +G+ G+ KYEKG + A L + + + Sbjct: 1 MEKYIGMRLREERERLGLSQVAMGDIGGVKKLTQLKYEKGDSCPDALYLASLHK-FGLDV 59 Query: 71 SF 72 + Sbjct: 60 QY 61 >gi|167583702|ref|ZP_02376090.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia ubonensis Bu] Length = 203 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P I + + + ++ DG R + ID Sbjct: 86 S-QPKSQETIRVDGPHDIPTLAGHDGRYQLRVWGPID 121 >gi|158423451|ref|YP_001524743.1| hypothetical protein AZC_1827 [Azorhizobium caulinodans ORS 571] gi|158330340|dbj|BAF87825.1| hypothetical protein [Azorhizobium caulinodans ORS 571] Length = 231 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 10/114 (8%) Query: 1 MVGNKKIP----------NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50 M +K P + + +GK I+ R +S L E G+ + + E+ Sbjct: 25 MAQREKPPERGSGLEPGAHAITGQLGKTIQRLRKAYNLSLSDLAEQSGVAKSIISQIERN 84 Query: 51 VNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + +S+ L+ + S + S +L Sbjct: 85 ETNPTLATVWRLSQALDVTVERVLASSDEAPFVEKLTRADTPMLQSEDGLCRLA 138 >gi|119026373|ref|YP_910218.1| transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] gi|118765957|dbj|BAF40136.1| transcriptional regulator [Bifidobacterium adolescentis ATCC 15703] Length = 105 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 26/62 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ +RM G+ Q L + + + + + + E+G +++ L++ + F Sbjct: 44 LKFKRMERGLKQSDLADLVNVRRETIGRLEQGQYCPSLRLAMDLAKALDTTVEDLFSFDD 103 Query: 79 TV 80 Sbjct: 104 EE 105 >gi|118463045|ref|YP_882635.1| transcriptional regulator [Mycobacterium avium 104] gi|254775896|ref|ZP_05217412.1| transcriptional regulator [Mycobacterium avium subsp. avium ATCC 25291] gi|118164332|gb|ABK65229.1| transcriptional regulator, XRE family protein with cupin sensor domain [Mycobacterium avium 104] Length = 178 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 24/68 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E L G+T + K E+G + + ++ L+ + F Sbjct: 5 LRPVRRQRGLTLEALAAQTGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFSDEA 64 Query: 79 TVCSDISS 86 Sbjct: 65 AREKIAVE 72 >gi|110800265|ref|YP_696047.1| DNA-binding protein [Clostridium perfringens ATCC 13124] gi|110674912|gb|ABG83899.1| DNA-binding protein [Clostridium perfringens ATCC 13124] Length = 114 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 24/69 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R ++Q +L L + + YE+ LQ +S + + Sbjct: 3 GNRLKTLRKEKDLTQAQLANILKTSASAIGMYEQNRRTPDTETLQTLSNYFNVSVDYLIG 62 Query: 76 VSPTVCSDI 84 + S Sbjct: 63 KTEIRESAE 71 >gi|15895760|ref|NP_349109.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15025516|gb|AAK80449.1|AE007748_5 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325509910|gb|ADZ21546.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 64 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 IR R G++Q++L E + ++ Q + E I++ E I F Sbjct: 3 NNIRKLREQFGLTQQELAERVSVSRQTIISLENERYNPSIFLAHKIAKSFELTIENVFIF 62 Query: 77 SP 78 Sbjct: 63 ED 64 >gi|158314888|ref|YP_001507396.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158110293|gb|ABW12490.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 176 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 33/125 (26%), Gaps = 2/125 (1%) Query: 14 NVGKRIRLRRMILGMS--QEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R G S Q + V YE+G + L ++ P+ Sbjct: 13 EVGARLRAIRTQQGHSLQQVETRSGGRWKVAAVGSYERGDRMINIEGLAALAAFYGVPVH 72 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + + R++ R + E Sbjct: 73 HLLPGGRPDALPPQAARVVLNLPALARVPADDAGPLRRWVAEIQRERDDYAGRVLSIREG 132 Query: 132 KYRTI 136 RT+ Sbjct: 133 DLRTL 137 >gi|134292501|ref|YP_001116237.1| XRE family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135658|gb|ABO56772.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia vietnamiensis G4] Length = 203 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P I + + + ++ DG R + ID Sbjct: 86 S-QPKAPETIRVDGPHDIPTLAGHDGRYQLRVWGPID 121 >gi|256843857|ref|ZP_05549344.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] gi|256613762|gb|EEU18964.1| transcriptional regulator [Lactobacillus crispatus 125-2-CHN] Length = 269 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/139 (13%), Positives = 52/139 (37%), Gaps = 11/139 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++ R G++QE+ + ++ K E+G++ + A L I + + Sbjct: 1 MEINTALKKARQSRGLTQEQFVAGI-LSPAHYSKIERGLHEISAKDLMAILQKNKISFDE 59 Query: 73 FF-------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 FF D DF L Q+ + + +L+ + Sbjct: 60 FFKQNSVAQADDENNLGDQLQTAYYNQDFNQVRK---LVTEIQQLPHHDLLKIKAKLILT 116 Query: 126 IVSSEKKYRTIEEECMVEQ 144 ++ ++K+ ++ ++++ Sbjct: 117 LLEGKRKFDVKDKNIVLQR 135 >gi|238927790|ref|ZP_04659550.1| hypothetical protein HMPREF0908_1690 [Selenomonas flueggei ATCC 43531] gi|238884337|gb|EEQ47975.1| hypothetical protein HMPREF0908_1690 [Selenomonas flueggei ATCC 43531] Length = 106 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 4/83 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN--RVGASRL 59 + ++K V +G +I R + G+ Q L E +GI+ + + E+G + S L Sbjct: 1 MDDRKAI--VFKQIGAKIAYYRTLRGLHQVVLAEKIGISSSVLSRIERGKYNKNISISML 58 Query: 60 QHISEVLESPISFFFDVSPTVCS 82 I+E L +S F + Sbjct: 59 LDIAEGLGVDVSMFVTFDEHEKA 81 >gi|284029517|ref|YP_003379448.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808810|gb|ADB30649.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 184 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 5/114 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D+ G +R R G+S ++ + G+ + + E G L + LE Sbjct: 6 PLDVIAGS-LRRERARAGLSLSEVAKRAGVAKSTLSQLESGTGNPSVETLWALCVALEIQ 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + D I ++E + L R+ I + Sbjct: 65 FADLIDPPRPRVQVIRADEGPAIYSEQADYSATLVAS----CPPNARRDIYRIA 114 >gi|227539099|ref|ZP_03969148.1| hypothetical protein HMPREF0765_3343 [Sphingobacterium spiritivorum ATCC 33300] gi|227241049|gb|EEI91064.1| hypothetical protein HMPREF0765_3343 [Sphingobacterium spiritivorum ATCC 33300] Length = 96 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR++R L +SQE + L ++ K E+G +V ++ I+ + + Sbjct: 1 MEIGEYIRIKRENLKVSQEAVAFKLDMSQAAYSKIERGETKVKVDQVYKIAHLFGISVYE 60 Query: 73 FF 74 Sbjct: 61 LL 62 >gi|269797236|ref|YP_003311136.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269093865|gb|ACZ23856.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 64 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+L R +LG+SQ +L +G+T + E G I+ VL I+ F Sbjct: 3 NKIKLYRTMLGLSQHELAGKVGVTRATINSIENGKTIPSLKLANDIAVVLGRSINDVF 60 >gi|218515801|ref|ZP_03512641.1| probable transcriptional regulator protein [Rhizobium etli 8C-3] Length = 469 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 2/117 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L ++Q + E L I+ + E+ + L ++ V + Sbjct: 9 GPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVDLEELRG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 S + + + P +L + +I+L R+ + Sbjct: 69 QSGGSLGQLKEVFADPLLSGELPGDQELVEVAEAAPNAAS--GMIKLYRAYREQAAR 123 >gi|254380659|ref|ZP_04996025.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194339570|gb|EDX20536.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 296 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 7/80 (8%) Query: 1 MVGNKKIPNPVDINV-------GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR 53 MV ++ P P V G+RI RR LG+++E++G+ G V E+ Sbjct: 1 MVVSRNKPGPASTEVPAGRTDLGRRIAARRQELGLTREQVGKRCGADATYVAYLEEHAAA 60 Query: 54 VGASRLQHISEVLESPISFF 73 L I++ L + ++ Sbjct: 61 PAIGSLARIADALGTTVAEL 80 >gi|194017594|ref|ZP_03056205.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|194010866|gb|EDW20437.1| conserved domain protein [Bacillus pumilus ATCC 7061] Length = 71 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 26/71 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + RI++ R +Q+ L E LG+T Q V E G + I+ E + Sbjct: 1 MEIKNRIKVLRAERDWTQKDLAEKLGVTRQTVAAIENGKYSLSLKLAFQIARTFEVDLYD 60 Query: 73 FFDVSPTVCSD 83 F Sbjct: 61 VFQEVDKEEPQ 71 >gi|167769693|ref|ZP_02441746.1| hypothetical protein ANACOL_01027 [Anaerotruncus colihominis DSM 17241] gi|167668054|gb|EDS12184.1| hypothetical protein ANACOL_01027 [Anaerotruncus colihominis DSM 17241] Length = 235 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R G+SQ+ LGI+ + YEKG+ G L ++ + SP Sbjct: 12 LRKERGISQKLAASKLGISQALLSHYEKGIRECGLDFLIRCADFYGVSCDYMLGRSPDRT 71 Query: 82 SDISSEEN 89 + E+ Sbjct: 72 GSKLTVED 79 >gi|160946894|ref|ZP_02094097.1| hypothetical protein PEPMIC_00855 [Parvimonas micra ATCC 33270] gi|158447278|gb|EDP24273.1| hypothetical protein PEPMIC_00855 [Parvimonas micra ATCC 33270] Length = 63 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R G++QE+L L ++ Q V E G I++ I F Sbjct: 3 NKLEQIRKDRGITQEELANILEVSRQTVNSLENGRYNPSIVLAFKIAKFFGLQIEEIF 60 >gi|117619251|ref|YP_855626.1| helix-turn-helix domain-containing protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560658|gb|ABK37606.1| helix-turn-helix domain protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 116 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 43/104 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK I +R G +QE + E L I + V + E+G+ RL ++++ ++ F Sbjct: 13 VGKAISHKRTQAGFTQEHVAEHLNIGMEAVSRMERGIVVPTVVRLAELAQLFGCELADFL 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + ++ + + + D L ++ + R + Sbjct: 73 RETSNRPTEQGIVLSQQLARLDDADRTLLLETVERLVERLARSR 116 >gi|329767341|ref|ZP_08258866.1| hypothetical protein HMPREF0428_00563 [Gemella haemolysans M341] gi|328836030|gb|EGF85721.1| hypothetical protein HMPREF0428_00563 [Gemella haemolysans M341] Length = 218 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R +SQ + E LG+T +EKG L+ ++ ++F Sbjct: 5 NRLKSLRAKRKVSQTAVAEYLGVTRAAYNSWEKGKYIPNKKNLEELALYFNVETTYF 61 >gi|324992265|gb|EGC24187.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK405] Length = 169 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + F Sbjct: 9 GPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLFG 68 Query: 76 VSPT-VCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIELVR 124 S E N D +S ++ +F+Q D + + ++ L R Sbjct: 69 TSKEIELEKSVLESNEYSDKVSEILKAVKYIEHFLQ-TDGQYLEDLLYLTR 118 >gi|296332927|ref|ZP_06875387.1| DNA-binding protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673272|ref|YP_003864944.1| DNA-binding protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296150207|gb|EFG91096.1| DNA-binding protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411516|gb|ADM36635.1| DNA-binding protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 185 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 34/93 (36%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + + + R ++ +++ E G++ + + EKG + + L I+ L+ Sbjct: 2 DDIQAIIAMNLVKLRKNRNLTLDQVSELTGVSKAMLGQIEKGKSTPTVTTLWKIANGLQV 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 S F I+ ++ + + Sbjct: 62 SFSVFLKEDKPKVRKINLQDIEPVTDNEENYSV 94 >gi|288556482|ref|YP_003428417.1| DNA-binding protein XRE transcriptional regulator [Bacillus pseudofirmus OF4] gi|288547642|gb|ADC51525.1| DNA-binding protein XRE transcriptional regulator [Bacillus pseudofirmus OF4] Length = 64 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+++ R +SQ +L + +G+T Q + E G I + L + F Sbjct: 5 RLKIARTEHDLSQAELAKKVGVTRQTIGLIEAGKYNPTLQLCLAICKTLHKTLDELFWEE 64 >gi|238023508|ref|YP_002907740.1| DNA-binding protein [Burkholderia glumae BGR1] gi|237878173|gb|ACR30505.1| DNA-binding protein [Burkholderia glumae BGR1] Length = 201 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 23/60 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 24 VGETIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 83 >gi|261368944|ref|ZP_05981827.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282568951|gb|EFB74486.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 108 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 15/114 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R+ + QE L E +G++ + E+G L I LE Sbjct: 6 IGRNIRQYRLERDLRQEDLAEAVGVSTNYMGMVERGEKTPSLETLVAILNALEISADMVL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + L ++ R++I +V +V+ Sbjct: 66 TDVVDSGYTVKQSL--------------LAEKVGRLP-AAERERIYAVVEVLVA 104 >gi|169334129|ref|ZP_02861322.1| hypothetical protein ANASTE_00522 [Anaerofustis stercorihominis DSM 17244] gi|169258846|gb|EDS72812.1| hypothetical protein ANASTE_00522 [Anaerofustis stercorihominis DSM 17244] Length = 294 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R L +SQE+ E +G++ Q + K+E + I + + I Sbjct: 5 QKLKQIRKKLNLSQEQFAEKIGVSRQAITKWETEGGIADIDNIIRIPKEFDISIDELLKE 64 Query: 77 SPT 79 Sbjct: 65 EKN 67 >gi|168698358|ref|ZP_02730635.1| hypothetical protein GobsU_02486 [Gemmata obscuriglobus UQM 2246] Length = 77 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 22/66 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G +Q + E + F+ Q +E G L ++ L + + Sbjct: 10 ENLKRLRAAKGWTQAQTAEVAEVPFRSYQNWEAGTREPRIDALPRLAAALGATVDQLLAD 69 Query: 77 SPTVCS 82 Sbjct: 70 VEPTEE 75 >gi|119943935|ref|YP_941615.1| DNA-binding transcriptional regulator [Psychromonas ingrahamii 37] gi|119862539|gb|ABM02016.1| predicted DNA-binding transcriptional regulator, helix-turn-helix domain [Psychromonas ingrahamii 37] Length = 74 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 5/65 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +GK+IR R G++QE+L ++ + K E +V +++ ++ L+ Sbjct: 4 IGKKIREIRKQRGLTQEQLAAACCLLGFDLSRSTLAKVESQNRQVTDYEIRYFAQALKVS 63 Query: 70 ISFFF 74 FF Sbjct: 64 EGDFF 68 >gi|150018309|ref|YP_001310563.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904774|gb|ABR35607.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 78 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +++ R +G++QE+LG +G++ Q + E IS++ I F F Sbjct: 3 NKLKEFREAVGLTQEQLGALVGVSRQAINSIETEKYEPSIWLAYDISQIFHCAIEEVFLF 62 Query: 75 DVSPTVCSDISS 86 + S S Sbjct: 63 EQSERKSRAQLS 74 >gi|15900264|ref|NP_344868.1| transcriptional regulator, putative [Streptococcus pneumoniae TIGR4] gi|15902345|ref|NP_357895.1| transcriptional regulator [Streptococcus pneumoniae R6] gi|111657195|ref|ZP_01407970.1| hypothetical protein SpneT_02001592 [Streptococcus pneumoniae TIGR4] gi|116515521|ref|YP_815820.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|148983739|ref|ZP_01817058.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP3-BS71] gi|148988089|ref|ZP_01819552.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP6-BS73] gi|148996747|ref|ZP_01824465.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP11-BS70] gi|149013057|ref|ZP_01833923.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP19-BS75] gi|149018025|ref|ZP_01834484.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP23-BS72] gi|168484208|ref|ZP_02709160.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|168486615|ref|ZP_02711123.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|168490753|ref|ZP_02714896.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|168576734|ref|ZP_02722592.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|169833560|ref|YP_001693853.1| hypothetical protein SPH_0443 [Streptococcus pneumoniae Hungary19A-6] gi|194396813|ref|YP_002037017.1| transcriptional regulator [Streptococcus pneumoniae G54] gi|225853916|ref|YP_002735428.1| hypothetical protein SPJ_0326 [Streptococcus pneumoniae JJA] gi|225856074|ref|YP_002737585.1| hypothetical protein SPP_0367 [Streptococcus pneumoniae P1031] gi|225858186|ref|YP_002739696.1| hypothetical protein SP70585_0396 [Streptococcus pneumoniae 70585] gi|298254745|ref|ZP_06978331.1| hypothetical protein SpneCM_03900 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502137|ref|YP_003724077.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|303259428|ref|ZP_07345405.1| hypothetical protein CGSSp9vBS293_07336 [Streptococcus pneumoniae SP-BS293] gi|303261183|ref|ZP_07347132.1| hypothetical protein CGSSp14BS292_03428 [Streptococcus pneumoniae SP14-BS292] gi|303263510|ref|ZP_07349433.1| hypothetical protein CGSSpBS397_04091 [Streptococcus pneumoniae BS397] gi|303265803|ref|ZP_07351701.1| hypothetical protein CGSSpBS457_06837 [Streptococcus pneumoniae BS457] gi|303267766|ref|ZP_07353568.1| hypothetical protein CGSSpBS458_09998 [Streptococcus pneumoniae BS458] gi|307066993|ref|YP_003875959.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|307704192|ref|ZP_07641115.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|1536960|emb|CAB01931.1| yorfE [Streptococcus pneumoniae] gi|14971806|gb|AAK74508.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4] gi|15457855|gb|AAK99105.1| Transcription regulator [Streptococcus pneumoniae R6] gi|116076097|gb|ABJ53817.1| transcriptional regulator, putative [Streptococcus pneumoniae D39] gi|147757322|gb|EDK64361.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP11-BS70] gi|147763092|gb|EDK70034.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP19-BS75] gi|147923886|gb|EDK74998.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP3-BS71] gi|147926553|gb|EDK77626.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP6-BS73] gi|147931589|gb|EDK82567.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP23-BS72] gi|168996062|gb|ACA36674.1| conserved domain protein [Streptococcus pneumoniae Hungary19A-6] gi|172042565|gb|EDT50611.1| conserved domain protein [Streptococcus pneumoniae CDC1873-00] gi|183570358|gb|EDT90886.1| conserved domain protein [Streptococcus pneumoniae CDC1087-00] gi|183574941|gb|EDT95469.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|183577574|gb|EDT98102.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194356480|gb|ACF54928.1| transcriptional regulator, putative [Streptococcus pneumoniae G54] gi|225720654|gb|ACO16508.1| conserved domain protein [Streptococcus pneumoniae 70585] gi|225723727|gb|ACO19580.1| conserved domain protein [Streptococcus pneumoniae JJA] gi|225726347|gb|ACO22199.1| conserved domain protein [Streptococcus pneumoniae P1031] gi|298237732|gb|ADI68863.1| transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|301793585|emb|CBW35962.1| putative DNA-binding protein [Streptococcus pneumoniae INV104] gi|301799462|emb|CBW32002.1| putative DNA-binding protein [Streptococcus pneumoniae OXC141] gi|301801258|emb|CBW33933.1| putative DNA-binding protein [Streptococcus pneumoniae INV200] gi|302638020|gb|EFL68506.1| hypothetical protein CGSSp14BS292_03428 [Streptococcus pneumoniae SP14-BS292] gi|302639362|gb|EFL69820.1| hypothetical protein CGSSpBS293_07336 [Streptococcus pneumoniae SP-BS293] gi|302642462|gb|EFL72807.1| hypothetical protein CGSSpBS458_09998 [Streptococcus pneumoniae BS458] gi|302644711|gb|EFL74960.1| hypothetical protein CGSSpBS457_06837 [Streptococcus pneumoniae BS457] gi|302647283|gb|EFL77507.1| hypothetical protein CGSSpBS397_04091 [Streptococcus pneumoniae BS397] gi|306408530|gb|ADM83957.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] gi|307622223|gb|EFO01237.1| helix-turn-helix family protein [Streptococcus mitis SK597] gi|332077619|gb|EGI88080.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] gi|332203500|gb|EGJ17567.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47368] gi|332204335|gb|EGJ18400.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 64 Score = 43.7 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R LG+SQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLFWE 61 Query: 77 SP 78 Sbjct: 62 ED 63 >gi|325917597|ref|ZP_08179796.1| putative transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325536194|gb|EGD07991.1| putative transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 85 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Query: 7 IPNPVDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 P PV+ + + R R +SQ + + G+T + E G + + +++ Sbjct: 15 KPVPVERLIFARNFRQARKAAKLSQRDVRDRTGLTRSWISNIETGKSPPNLDNMAMLAKC 74 Query: 66 LESPISFFF 74 + P+ Sbjct: 75 VGVPLWKLL 83 >gi|322805848|emb|CBZ03413.1| DNA-binding protein; possible transcriptional regulator [Clostridium botulinum H04402 065] Length = 370 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 35/84 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I R ++QE+L +G++ V K+E G + + L I+ + I Sbjct: 6 IGEVIYRLRKEKAITQEQLANFVGVSTAAVSKWESGASYPDITLLPVIATLFNVTIDTLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + + ++ + + + + Sbjct: 66 NFKIELSNEEVMALFSECEKLFSN 89 >gi|296118143|ref|ZP_06836724.1| putative Helix-turn-helix domain protein [Corynebacterium ammoniagenes DSM 20306] gi|295968701|gb|EFG81945.1| putative Helix-turn-helix domain protein [Corynebacterium ammoniagenes DSM 20306] Length = 192 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 27/73 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R+ S + L I+ + + E G R+ L I++ L + + + Sbjct: 12 QRIRGLRLARNWSLDTLARRCEISTSTLSRIETGRQRISLDLLVTIAQALGTSLDQLVEP 71 Query: 77 SPTVCSDISSEEN 89 I E Sbjct: 72 EGNDDVVIRPEPE 84 >gi|291544611|emb|CBL17720.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 145 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I R +G+SQ+ L E + +T Q V ++E G L+ +S+V + I+ Sbjct: 7 ILQLRTQMGLSQDALAEKIYVTRQAVSRWENGETIPNVEALKLLSQVFDVSINTLL 62 >gi|291166669|gb|EFE28715.1| transcriptional regulator [Filifactor alocis ATCC 35896] Length = 117 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 1/102 (0%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D G I+ RM G+++E++G + I + + E L + Sbjct: 2 RKKEDKFDFRAFGLAIKEARMKRGLTREQVGALIEIDPRYLTNIENKGQHPSIQVLYDLV 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 +L+ + FF + + + T L L Sbjct: 62 SLLDVSVDEFFLPRNDLAKSTRRLQVEKLLDSFTDKELSLIE 103 >gi|229003088|ref|ZP_04160940.1| Transcriptional regulator Xre [Bacillus mycoides Rock1-4] gi|228758171|gb|EEM07364.1| Transcriptional regulator Xre [Bacillus mycoides Rock1-4] Length = 67 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RIR R + G +QE + LG++ + + E+G + +++ L I Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRTPSQDFVVEVAKTLNISIDELM 65 >gi|157372360|ref|YP_001480349.1| XRE family transcriptional regulator [Serratia proteamaculans 568] gi|157324124|gb|ABV43221.1| transcriptional regulator, XRE family [Serratia proteamaculans 568] Length = 84 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 4/84 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLESP 69 V +R++ R G++QEKLG GI ++ +YE G + + ++ VL+ P Sbjct: 1 MVPQRLKSARQRAGLTQEKLGVLAGIDEATARSRISQYESGTYTPTFTTMCALARVLDVP 60 Query: 70 ISFFFDVSPTVCSDISSEENNVMD 93 +F+ + + ++ Sbjct: 61 ECYFYILDDAFSEKVLRLHQESLE 84 >gi|37527342|ref|NP_930686.1| hypothetical protein plu3469 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786776|emb|CAE15842.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 399 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 30/57 (52%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+ R G+S+ LG + + + K+E G + A L +S++L P+S+F Sbjct: 11 ERLTQIREARGLSKINLGRLVDRSPSTITKWENGNHSPDAEVLHSLSQILNCPVSWF 67 >gi|53725908|ref|YP_103548.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|67643822|ref|ZP_00442565.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|121601001|ref|YP_992298.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124383395|ref|YP_001026857.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126450501|ref|YP_001079856.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|166999969|ref|ZP_02265798.1| DNA-binding protein [Burkholderia mallei PRL-20] gi|254175449|ref|ZP_04882109.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|254202232|ref|ZP_04908595.1| DNA-binding protein [Burkholderia mallei FMH] gi|254207565|ref|ZP_04913915.1| DNA-binding protein [Burkholderia mallei JHU] gi|52429331|gb|AAU49924.1| DNA-binding protein [Burkholderia mallei ATCC 23344] gi|121229811|gb|ABM52329.1| DNA-binding protein [Burkholderia mallei SAVP1] gi|124291415|gb|ABN00684.1| DNA-binding protein [Burkholderia mallei NCTC 10229] gi|126243371|gb|ABO06464.1| DNA-binding protein [Burkholderia mallei NCTC 10247] gi|147746479|gb|EDK53556.1| DNA-binding protein [Burkholderia mallei FMH] gi|147751459|gb|EDK58526.1| DNA-binding protein [Burkholderia mallei JHU] gi|160696493|gb|EDP86463.1| DNA-binding protein [Burkholderia mallei ATCC 10399] gi|238525262|gb|EEP88690.1| DNA-binding protein [Burkholderia mallei GB8 horse 4] gi|243064084|gb|EES46270.1| DNA-binding protein [Burkholderia mallei PRL-20] Length = 187 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 37/103 (35%), Gaps = 2/103 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R + + L E G+T + K E+G++ + +S+ L+ + F Sbjct: 4 RLKLLRKQKEWTLDVLAEATGLTKSYLSKVERGLSVPSIAVALKLSKALQVDVEQLFSEG 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + + R + I +K++ Sbjct: 64 RDRELITVTRASERTSMG--RASSERVRTYESIAAGVAPKKLL 104 >gi|323489002|ref|ZP_08094239.1| hypothetical protein GPDM_06645 [Planococcus donghaensis MPA1U2] gi|323397394|gb|EGA90203.1| hypothetical protein GPDM_06645 [Planococcus donghaensis MPA1U2] Length = 67 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 24/65 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R I G SQE+L + +T Q + E + +S+ L + F Sbjct: 3 NQIQELRKIQGFSQEELAKRCSVTRQTINAIENNKYDPTLALAFKLSKNLNVKVDELFIF 62 Query: 77 SPTVC 81 Sbjct: 63 EEESK 67 >gi|307137999|ref|ZP_07497355.1| putative regulator [Escherichia coli H736] gi|331641924|ref|ZP_08343059.1| putative regulator [Escherichia coli H736] gi|331038722|gb|EGI10942.1| putative regulator [Escherichia coli H736] Length = 140 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 11/136 (8%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K + ++ + R++ RR LG+SQ KL E G T ++ YE G VG + Sbjct: 5 NEKIAASRLNDKIAMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVL 64 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + L + +L F Q+ + ++ I Sbjct: 65 GKALGISPPELLFGEKDSS-----------ELWLNESQRKLLELFNQLPGSEQQRMIELF 113 Query: 123 VRSIVSSEKKYRTIEE 138 + ++ Sbjct: 114 EVRLKEIDEYVEKYLR 129 >gi|290769910|gb|ADD61680.1| putative protein [uncultured organism] Length = 209 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ ++ + QL + +D + ++ +++ Sbjct: 70 KGETDEYETDITDKKELQIRDAMGDILQQLPLDLSKKEDAFSKDLLLLMLKQ 121 >gi|295705528|ref|YP_003598603.1| helix-turn-helix family protein [Bacillus megaterium DSM 319] gi|294803187|gb|ADF40253.1| helix-turn-helix family protein [Bacillus megaterium DSM 319] Length = 141 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 40/93 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R +S+E++ E L ++ Q + K+E + L +S++ E+ I Sbjct: 1 MRLGNQLQTLREEQKISEEEVAEQLSVSVQHIHKWENNKSYPDIQHLLKLSDIYETTIDE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 F T+ + I+ E D R Sbjct: 61 FIKKDATLQNRINIREEEKKDDDELFHPGFYIR 93 >gi|225860372|ref|YP_002741881.1| hypothetical protein SPT_0383 [Streptococcus pneumoniae Taiwan19F-14] gi|270292145|ref|ZP_06198360.1| conserved domain protein [Streptococcus sp. M143] gi|303255209|ref|ZP_07341283.1| transcriptional regulator, putative [Streptococcus pneumoniae BS455] gi|307710486|ref|ZP_07646923.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|307711382|ref|ZP_07647800.1| helix-turn-helix family protein [Streptococcus mitis SK321] gi|322377106|ref|ZP_08051598.1| conserved domain protein [Streptococcus sp. M334] gi|331265735|ref|YP_004325365.1| putative transcriptional regulator [Streptococcus oralis Uo5] gi|225726800|gb|ACO22651.1| conserved domain protein [Streptococcus pneumoniae Taiwan19F-14] gi|270279673|gb|EFA25515.1| conserved domain protein [Streptococcus sp. M143] gi|302597842|gb|EFL64914.1| transcriptional regulator, putative [Streptococcus pneumoniae BS455] gi|307616800|gb|EFN95982.1| helix-turn-helix family protein [Streptococcus mitis SK321] gi|307618749|gb|EFN97888.1| helix-turn-helix family protein [Streptococcus mitis SK564] gi|321281819|gb|EFX58827.1| conserved domain protein [Streptococcus sp. M334] gi|326682407|emb|CBZ00024.1| putative transcriptional regulator [Streptococcus oralis Uo5] gi|332202241|gb|EGJ16310.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] Length = 64 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R LG+SQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLFWE 61 Query: 77 S 77 Sbjct: 62 D 62 >gi|254993649|ref|ZP_05275839.1| hypothetical protein LmonocytoFSL_12128 [Listeria monocytogenes FSL J2-064] Length = 93 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KRI++ R LG+SQEK + + V K + G + + E FF++ Sbjct: 10 KRIKILRKRLGLSQEKSSLAASLDARYVNKLKNGKFNLSVPTFDKLIEAFGMSYKDFFEI 69 Query: 77 SPT 79 Sbjct: 70 EKD 72 >gi|210612353|ref|ZP_03289278.1| hypothetical protein CLONEX_01479 [Clostridium nexile DSM 1787] gi|210151613|gb|EEA82620.1| hypothetical protein CLONEX_01479 [Clostridium nexile DSM 1787] Length = 231 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK VG+R++ RR L ++ +LG+ +G+ +Q+YE + + Sbjct: 1 MKTLKKEITFTAKQVGERVKERRTELNLTMPELGKRVGVNKSTIQRYEADGVDPKRTMII 60 Query: 61 H-ISEVLESPISFFFDVSPTVCSDISS 86 + ++E L + + +S D + Sbjct: 61 NGLAEALLTTPEWLTGLSEDKEYDSRT 87 >gi|169630258|ref|YP_001703907.1| hypothetical protein MAB_3176c [Mycobacterium abscessus ATCC 19977] gi|169242225|emb|CAM63253.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 198 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 6/118 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + V +G R+R R+ ++ +L E GI+ + + E G R L Sbjct: 1 MDDQNRRMEAVLDALGPRLRALRLHRQITLAQLSETTGISESTLSRLESGQRRPTLELLL 60 Query: 61 HISEVLESPISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 ++E + P+ + P V ++ +S G + F QI Sbjct: 61 LLAEAHQVPLDELVNAPATGDPRVHPKPFKRNGSIYLPLSRRPGG--IQCFKQIIPPH 116 >gi|86143509|ref|ZP_01061894.1| hypothetical protein MED217_12959 [Leeuwenhoekiella blandensis MED217] gi|85829956|gb|EAQ48417.1| hypothetical protein MED217_12959 [Leeuwenhoekiella blandensis MED217] Length = 71 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +G RI R G +Q L G Q ++K E G A L IS+ L Sbjct: 2 TKDALKKKIGNRIVKLREQKGWTQSDLARECGKDRQAIEKLENGKVNPTAYSLFEISKAL 61 Query: 67 ESPISFFF 74 + + Sbjct: 62 KIELYQLL 69 >gi|328954706|ref|YP_004372039.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] gi|328455030|gb|AEB06224.1| helix-turn-helix domain protein [Coriobacterium glomerans PW2] Length = 191 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 41/116 (35%), Gaps = 6/116 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R ++ +L G++ + E G++ + L + L I Sbjct: 18 QLGERLRSLRKKKVLTITQLSLYTGLSVGFLSNMENGISSPTVANLTKVCNALNVSILDV 77 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN------RYFIQIDDVKVRQKIIELV 123 + + E ++D + +++ R F I +++ + Sbjct: 78 LGEGDALHEIVRDGEAEIIDVPESSMKMKIVDFGANHRAFSVITIEPHARRVDAVA 133 >gi|307286631|ref|ZP_07566721.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306502260|gb|EFM71542.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|315152692|gb|EFT96708.1| helix-turn-helix protein [Enterococcus faecalis TX0031] Length = 111 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 40/103 (38%), Gaps = 2/103 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR +R LG +Q++L E + T Q V ++E V L +S L +P+S F + Sbjct: 10 IREKRKALGWTQKELAEKIFSTQQAVARWENSVTEPNLDSLTALSRALGTPVSHFLEEVA 69 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + + + + + R ++++ Sbjct: 70 IDSEEEFLTLYRSLSADDASRTINYMKLLKR--QENERNQLLK 110 >gi|268611327|ref|ZP_06145054.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 68 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R M+Q ++ E L + + YE+G + L +++ + + + + Sbjct: 3 RRIRDLREDKDMTQTQIAEILHCSQRVYSDYERGKLDIPTEILIKLADFHKVSVDYILER 62 Query: 77 SP 78 + Sbjct: 63 TD 64 >gi|229028239|ref|ZP_04184378.1| hypothetical protein bcere0028_3680 [Bacillus cereus AH1271] gi|228733075|gb|EEL83918.1| hypothetical protein bcere0028_3680 [Bacillus cereus AH1271] Length = 83 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 22 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|239813111|ref|YP_002942021.1| anaerobic benzoate catabolism transcriptional regulator [Variovorax paradoxus S110] gi|239799688|gb|ACS16755.1| transcriptional regulator, XRE family with shikimate kinase activity [Variovorax paradoxus S110] Length = 316 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 4/99 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 NP+ +G+R+R R G++++ + ++ + + E G+ LQ ++ L Sbjct: 29 AKNPLLAALGERVRNLRAQRGLTRKAVAIAADVSERHLANLEYGIGNASILVLQQVAGAL 88 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 ++ + S E + + + L R Sbjct: 89 HCSLAELVGD----VTTSSPEWLLIRELLENRSEADLRR 123 >gi|186474250|ref|YP_001861592.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184196582|gb|ACC74546.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 215 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 22/144 (15%), Positives = 46/144 (31%), Gaps = 8/144 (5%) Query: 4 NKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + +D VG R+R R G++ +L E GI + K E+G + + + Sbjct: 13 TTRASAQIDHQAVGARLRDARKARGLTLMQLSEQSGIAVSTISKAERGDIALTYDKFAAL 72 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + L+ F + S N + + + ++++ + Sbjct: 73 AHALQLEFDAIFGRAKRSGSSPI--VPTFTASGEQMIYDTPNYEYGMLANDLTGKRMVPM 130 Query: 123 -----VRSIVSSEKKYRTIEEECM 141 R + R EE + Sbjct: 131 RAHVRARKLSDFPDYIRHSGEEFV 154 >gi|153938571|ref|YP_001391627.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152934467|gb|ABS39965.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295319660|gb|ADG00038.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 80 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R ++Q+++ + L IT V YE G+ + L IS+ + + Sbjct: 6 RLKGLREDRDLTQDQIADVLSITRSAVANYENGIREPDMALLVKISDYFNVSLDYLL 62 >gi|89096842|ref|ZP_01169733.1| hypothetical protein B14911_18095 [Bacillus sp. NRRL B-14911] gi|89101363|ref|ZP_01174151.1| hypothetical protein B14911_05451 [Bacillus sp. NRRL B-14911] gi|89083922|gb|EAR63135.1| hypothetical protein B14911_05451 [Bacillus sp. NRRL B-14911] gi|89088222|gb|EAR67332.1| hypothetical protein B14911_18095 [Bacillus sp. NRRL B-14911] Length = 91 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 4/83 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV K + + ++ R++ MSQ++L E +G++ Q + EKG Sbjct: 11 MVMKKDFGDSIS----NKVYEYRVLARMSQQELAEQVGVSKQTIFVMEKGNYVPTLLLAF 66 Query: 61 HISEVLESPISFFFDVSPTVCSD 83 I+E + ++ F S+ Sbjct: 67 RIAEFFKVDVNDIFTYEKGNDSN 89 >gi|310286841|ref|YP_003938099.1| transcriptional regulator with helix-turn-helix domain [Bifidobacterium bifidum S17] gi|309250777|gb|ADO52525.1| Transcriptional regulator with helix-turn-helix domain [Bifidobacterium bifidum S17] Length = 415 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R M+QE+L LG++ Q + K+E +L I ++ + Sbjct: 6 NLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLGD 65 Query: 78 PTVCSDISSEE 88 +V + Sbjct: 66 VSVSTSRPDSH 76 >gi|309774761|ref|ZP_07669783.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308917446|gb|EFP63164.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 118 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 10/121 (8%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +++ VG IR GM+Q++L +G T + + Y G + L I + Sbjct: 2 KKVTEINLKVGDAIRKGLQRKGMTQKELAMLVGSTQRSISSYINGNAQPPLDILSLICRI 61 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE ++ + N + P L++ + F Q+ D K R +L++S Sbjct: 62 LEINMNQIL---------QIPDYNFPGRMLHDPLELEVMKVFDQVPDEK-RITFTKLMKS 111 Query: 126 I 126 I Sbjct: 112 I 112 >gi|289434995|ref|YP_003464867.1| helix-turn-helix motif protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171239|emb|CBH27781.1| helix-turn-helix motif protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 115 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 7/100 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFFF 74 G+RI+ RR LG + + L E LG++ + +YE G + + L +S +L++ ++ Sbjct: 4 GERIKKRRKELGYNADYLAEELGVSRSTIFRYENGEIEKLPITILDSLSNILKTTPAYLM 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + EN D I+ L + +I D + Sbjct: 64 GWVDDGAEHLEDSENLSNDEIN------LITNYRKISDRQ 97 >gi|229818666|ref|YP_002880192.1| XRE family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564579|gb|ACQ78430.1| transcriptional regulator, XRE family [Beutenbergia cavernae DSM 12333] Length = 201 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 27/67 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R G++ + G++ + + E G + L+ ++ ++ ++ F Sbjct: 25 LGDRLRDLRRQHGLTLRDVAGQTGLSVALLSQIENGRTDPSITSLRKLARAFDAEVATLF 84 Query: 75 DVSPTVC 81 Sbjct: 85 HEPDAPS 91 >gi|229077098|ref|ZP_04209803.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-18] gi|228706198|gb|EEL58482.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-18] Length = 292 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R +SQ +L + + Q+ K EKG+ + L +SE L ++ F Sbjct: 6 LGIIIKELRKKKNISQSELCRGI-CSQSQISKIEKGIIYPSSILLYQLSERLGVDPNYIF 64 Query: 75 DVSPTVCSDISSEENN-VMDFISTPDGLQLNRYFIQIDDVK 114 ++ + D I +L + + Sbjct: 65 ALTQNKKLKYVENVKYVIRDCIKQKQYEELYEIVKKEKNEN 105 >gi|227112883|ref|ZP_03826539.1| transcriptional regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 96 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R+ G++QE L GI + K E+G + + + I+ L ++ Sbjct: 26 GAAVRALRVERGVAQETLAHQAGIERSHMGKIERGEHMPTLAIIFKIARTLGLSVAHLMG 85 Query: 76 VSPTVCSDISS 86 V ++ + Sbjct: 86 AVEEVLGEVPN 96 >gi|224282399|ref|ZP_03645721.1| Xre-type transcriptional regulator [Bifidobacterium bifidum NCIMB 41171] gi|313139541|ref|ZP_07801734.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] gi|313132051|gb|EFR49668.1| conserved hypothetical protein [Bifidobacterium bifidum NCIMB 41171] Length = 415 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R M+QE+L LG++ Q + K+E +L I ++ + Sbjct: 6 NLQYLRAQRNMTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLGD 65 Query: 78 PTVCSDISSEE 88 +V + Sbjct: 66 VSVSTSRPDSH 76 >gi|206561879|ref|YP_002232642.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] gi|198037919|emb|CAR53864.1| putative DNA-binding protein [Burkholderia cenocepacia J2315] Length = 203 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P I + + + ++ DG R + ID Sbjct: 86 S-QPKAPETIRVDGPHDIPTLAGHDGRYQLRVWGPID 121 >gi|160934666|ref|ZP_02082052.1| hypothetical protein CLOLEP_03539 [Clostridium leptum DSM 753] gi|156866119|gb|EDO59491.1| hypothetical protein CLOLEP_03539 [Clostridium leptum DSM 753] Length = 124 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 6/116 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R ++Q+ L + LG+T + + YE G + ++E + + + Sbjct: 6 GAILQELRKDHKITQKDLADILGVTSKTISNYETGSQFPDLLIIIKLAEYFDVNMDYL-- 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 S + ++ + L LN + D + ++ II ++ + + Sbjct: 64 ----GGRTRISSKWETIEKGLEVNNLNLNLDDLLTLDNEDKKLIISFIKRLRKQKS 115 >gi|153971519|ref|YP_001393059.1| DNA-binding protein RDGA [Vibrio vulnificus] gi|153971715|ref|YP_001393216.1| DNA-binding protein RDGA [Vibrio vulnificus] gi|152955041|emb|CAL25393.1| DNA-binding protein RDGA [Vibrio vulnificus] gi|152955200|emb|CAL25550.1| DNA-binding protein RDGA [Vibrio vulnificus] Length = 208 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 13 INVGKRIRLRRMI-LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +++G RI+ R L +S+++LG LG++ V ++E GVN RL +S VL++ Sbjct: 1 MSLGGRIKKLREESLHISKKELGAILGVSQSAVNQWENGVNYPSQKRLIELSRVLKTTYE 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFIS 96 + + + + +D S E + ++ Sbjct: 61 WLVNGTTSSHNDGSEYEIPFYEHVN 85 >gi|148807441|gb|ABR13513.1| predicted transcriptional regulator [Pseudomonas aeruginosa] Length = 73 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G+RIR++R +SQ+ L I V + E+G + +L I+ VL Sbjct: 2 DKLAKALGERIRVQRKACRISQDALALACNIDRSYVGRIERGEVNITVEKLYRIASVLAC 61 Query: 69 PISFFF 74 Sbjct: 62 DPCGLL 67 >gi|332967905|gb|EGK06997.1| XRE family transcriptional regulator [Kingella kingae ATCC 23330] Length = 89 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 17 KRIRLRRMILGMSQEKLGECL----GITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR + R M+QEKLG + + ++ +YEKG ++ + L I+++L+ P ++ Sbjct: 10 KRFKEARKAKKMTQEKLGLAIGLDEFVASTRINRYEKGNHQPDLNTLVWIAQILDVPPAY 69 Query: 73 FFDVSP 78 FF Sbjct: 70 FFVDDE 75 >gi|326390400|ref|ZP_08211958.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993518|gb|EGD51952.1| helix-turn-helix domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 132 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 2/105 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R ++ L + G++ + E + ++ L + L I + Sbjct: 4 IGERIKYARKKNNLTITALSKLTGLSVGNLSDLENNKSMPSSNALIKLKNALNVSIDWLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN--RYFIQIDDVKVRQ 117 E+ + + + F + + + R Sbjct: 64 TGQQIEYVKEEEEKYLSREEFESISEKDKIIFKAFETLPEERKRD 108 >gi|313623764|gb|EFR93902.1| transcriptional regulator [Listeria innocua FSL J1-023] Length = 68 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++++ R+ +SQE+L + + ++ Q + E G + I + L + F Sbjct: 5 KMKVARVEKDISQEELAKLINVSRQTISSVEAGNYNPTLNLCIAICKTLGKTLDDLFWEE 64 Query: 78 PT 79 Sbjct: 65 DD 66 >gi|310640587|ref|YP_003945345.1| transcription factor,eukaryotic mbf1-like protein [Paenibacillus polymyxa SC2] gi|309245537|gb|ADO55104.1| Predicted transcription factor,eukaryotic MBF1-like protein [Paenibacillus polymyxa SC2] Length = 115 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 2/104 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R G+SQE L E G + E+ + L+ I++ L + Sbjct: 8 VGTRIRDIRKSKGLSQEALAEQAGFNSSYIGFIERAERNISLKNLEKIAKALNVGVYQLL 67 Query: 75 D--VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 ++ S ++ + T + + D+ +R Sbjct: 68 TYVKENDELTEEDSSIKAILSLLRTRESKDTELALKILTDIFMR 111 >gi|303241851|ref|ZP_07328346.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302590626|gb|EFL60379.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 223 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 32/85 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R +SQ+ + + LGIT Q V YE L+ +++ I + + Sbjct: 7 LKQLREQSRLSQKDIADYLGITRQAVASYELAKREPDYEILKKLADYFGVSIDYILGRAN 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQL 103 + + NN+ +L Sbjct: 67 CRDLNALTVGNNIDLIKGNFTYKEL 91 >gi|312197651|ref|YP_004017712.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311228987|gb|ADP81842.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 175 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 35/94 (37%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + V VG R+R R +S L G+ + + E GV L ++ L Sbjct: 1 MDSEVAAAVGARLRATRQARDLSVGALAARAGVGKGSLSEIENGVRNPTLGTLYALAGAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 E P++ P V ++D PDG Sbjct: 61 EVPLATLLADRPGVEVASPGIGARLLDATRHPDG 94 >gi|253690628|ref|YP_003019818.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757206|gb|ACT15282.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 188 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + +G ++ R G S + E G++ + + E+G + + L I+ L Sbjct: 1 MSDELTHRIGNTLKTLRQEKGWSLTRSSEETGVSKAMLGQIERGESSPTVATLWKIATGL 60 Query: 67 ESPISFF 73 S F Sbjct: 61 NVAFSTF 67 >gi|169333644|ref|ZP_02860837.1| hypothetical protein ANASTE_00028 [Anaerofustis stercorihominis DSM 17244] gi|169259638|gb|EDS73604.1| hypothetical protein ANASTE_00028 [Anaerofustis stercorihominis DSM 17244] Length = 126 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ MSQE L E L ++ + K+E ++ I+ + + I Sbjct: 5 EKLKKLRIDNEMSQENLAELLNVSRSAIAKWESSKGMPDLENIKMIAPIFDVTIDSLIRD 64 >gi|152989688|ref|YP_001345474.1| hypothetical protein PSPA7_0078 [Pseudomonas aeruginosa PA7] gi|150964846|gb|ABR86871.1| conserved domain protein [Pseudomonas aeruginosa PA7] Length = 73 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G+RIR++R +SQ+ L + V + E+G + +L I+ L Sbjct: 2 DKLAKALGERIRMQRKACRISQDALALACSLDRSYVGRIERGEVNITVEKLYRIAGELAC 61 Query: 69 PISFFF 74 S Sbjct: 62 DPSSLL 67 >gi|116872827|ref|YP_849608.1| DNA-binding domain-containing protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741705|emb|CAK20829.1| conserved DNA-binding domain protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 321 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 37/116 (31%), Gaps = 6/116 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G +++ R G+S + L + I + + E+G V + +E + Sbjct: 3 ELGDKLKQARREKGLSLDDLQQITKIQKRYLVAIEEGNYAVMPGKFYARAFIKQYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + FD + D +E + + R + +++ Sbjct: 63 LDSATLFDEFESEVPDTPQQEVVNNEPTRVQSKRNPMPAQSVGNQTNSRNRFFDIL 118 >gi|327192173|gb|EGE59146.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 469 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 19/131 (14%), Positives = 42/131 (32%), Gaps = 8/131 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K I G ++R R L ++Q + E L I+ + E+ + L Sbjct: 1 MAERK------IFAGPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLK 54 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ V + S + + + P +L + +I+ Sbjct: 55 LAAVYRVDLEELRGQSGGSLGQLKEVFADPLLSGELPGDQELVEVAEAAPNAAS--GMIK 112 Query: 122 LVRSIVSSEKK 132 L R+ + Sbjct: 113 LYRAYREQAAR 123 >gi|323463315|gb|ADX75468.1| conserved hypothetical protein [Staphylococcus pseudintermedius ED99] Length = 395 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++ RMI G S++ L + L ++ Q V +YE+ +++ +++ FFF Sbjct: 4 GENLKALRMIEGYSRKSLADVLQVSEQAVWQYEEQNMMPEINKIYTLAQKFNVKTKFFFS 63 Query: 76 VSPT 79 Sbjct: 64 PKQE 67 >gi|315281167|ref|ZP_07869853.1| transcriptional regulator [Listeria marthii FSL S4-120] gi|313615189|gb|EFR88648.1| transcriptional regulator [Listeria marthii FSL S4-120] Length = 67 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 27/67 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V +++ R ++Q +L + L ++ Q + EKG I++ + Sbjct: 1 MIVTNKLKNLREERDIAQNELAKALEVSRQTIHAIEKGKYNPSLELSLKIAKYFHLSVEE 60 Query: 73 FFDVSPT 79 F++ Sbjct: 61 IFNLEGE 67 >gi|237747825|ref|ZP_04578305.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229379187|gb|EEO29278.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 221 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 1/85 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GK+I+ R L + EKL E G+ + E + + I+ + Sbjct: 1 MSLGKQIKKYRQQLDWTLEKLEEESGVPKGTISALEVRDSD-RSKYAPEIARAFGISVDQ 59 Query: 73 FFDVSPTVCSDISSEENNVMDFIST 97 D + ++S E + D T Sbjct: 60 LMDENIDASEAVNSHEKSKGDDEHT 84 >gi|229177518|ref|ZP_04304897.1| hypothetical protein bcere0005_8860 [Bacillus cereus 172560W] gi|228605965|gb|EEK63407.1| hypothetical protein bcere0005_8860 [Bacillus cereus 172560W] Length = 60 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R+ L MSQE L + +G+ + + E G I++VL+ PI F Sbjct: 1 MKEYRVKLNMSQEDLAKEVGVRRETIGNLENGKYNPSFKLTYDIAKVLKVPIEVLFWFEE 60 >gi|229181932|ref|ZP_04309236.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] gi|228601526|gb|EEK59043.1| Transcriptional regulator, XRE [Bacillus cereus 172560W] Length = 127 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 44/126 (34%), Gaps = 13/126 (10%) Query: 16 GKRIRLRRMILG-----MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 GK+++ R +Q + LGI YE + + I+ + Sbjct: 8 GKKLKCLREEKKKENVEWTQTYVANQLGIARTTYTAYENDTKQPPMETILKIANLFSVST 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVS 128 F S + +N+++ +L+ +F I + + R+++ I+ Sbjct: 68 DFLLGRVSDCKQTKSFDIDNILN------DPELSLWFKDIKEASPEKREELKRFWEFIMQ 121 Query: 129 SEKKYR 134 E K + Sbjct: 122 KETKQK 127 >gi|227873975|ref|ZP_03992191.1| transcriptional regulator [Oribacterium sinus F0268] gi|227840183|gb|EEJ50597.1| transcriptional regulator [Oribacterium sinus F0268] Length = 67 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +SQ++L + +G++ Q + EKG I VL + F Sbjct: 5 RLKSARAGKDLSQQELADLVGVSRQTINAIEKGDYNPTIRLCLAICHVLGKTLDELFWEE 64 >gi|150389852|ref|YP_001319901.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949714|gb|ABR48242.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 64 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R+ +QE L +G+T Q + E G I++ L ++ F Sbjct: 4 SRMKVARVEKDFTQEDLANIVGVTRQTISLIEGGKYNPSIKLCIEIAKALNKTLNDLF 61 >gi|328477982|gb|EGF47897.1| transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 70 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 23/68 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R ++Q+ L + L ++ Q V E G +S V PI F Sbjct: 3 NRIETLRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIFID 62 Query: 77 SPTVCSDI 84 + Sbjct: 63 ENADSQSL 70 >gi|327393585|dbj|BAK11007.1| putative transcriptional regulator [Pantoea ananatis AJ13355] Length = 194 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 13/116 (11%), Positives = 40/116 (34%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + VD ++ + + R ++ +L + G++ + K E+G + A+ L Sbjct: 1 MDKTSKNQIVDSDIARLLLKHRKARNLTVTELAQRSGVSQAMISKVERGTSSPSATILSR 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++ + +S F + + + + G+ ++ + Sbjct: 61 LANAMNITLSKLFAELELRQNSLVLFADQQQHWTDEQSGITRWSLSPAGACPELIR 116 >gi|307710469|ref|ZP_07646906.1| putative transcriptional regulator [Streptococcus mitis SK564] gi|307618732|gb|EFN97871.1| putative transcriptional regulator [Streptococcus mitis SK564] Length = 113 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++Q + E LGI+ +E+G+ + L I+++L + + Sbjct: 5 ERLKTLRKQAQLTQVDVAEKLGISQPAYASWERGIKKPTQENLVKIAQILNVSVDYLVGN 64 Query: 77 SPTVCSDISSEE 88 S + + E Sbjct: 65 SDYTEDKLDNIE 76 >gi|317054864|ref|YP_004103331.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447133|gb|ADU20697.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 211 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 32/67 (47%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+R+R R+++G++Q++ + G++ + E+G + +++ + + P Sbjct: 12 QVGERLRGARLLMGITQKQAAQATGMSQSFLSLVERGRKSICTAQIISLIRYYKVPYEMI 71 Query: 74 FDVSPTV 80 F Sbjct: 72 FGSEEKD 78 >gi|297537332|ref|YP_003673101.1| XRE family transcriptional regulator [Methylotenera sp. 301] gi|297256679|gb|ADI28524.1| transcriptional regulator, XRE family [Methylotenera sp. 301] Length = 223 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 13/100 (13%) Query: 1 MVGNKKI--PNPVDI---NVGKRIRLRRMILGMSQEKLGECLG--------ITFQQVQKY 47 M +KK N VD+ ++GKRI R LG+SQE L + I+ + Y Sbjct: 1 MSDDKKQSEKNKVDVLARDIGKRIFDARDGLGLSQESLYKRTKLNDHDGIGISRAVLSLY 60 Query: 48 EKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 E+G+N+ GA + + L+ ++ S + + Sbjct: 61 ERGINKPGAREISILCVTLKISPNWLLFGSESPAEALLPS 100 >gi|296137789|ref|YP_003645032.1| XRE family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296025923|gb|ADG76693.1| transcriptional regulator, XRE family [Tsukamurella paurometabola DSM 20162] Length = 377 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR--VGASRLQHISEVLESPISF 72 +G+RI+ R+ GMSQ+ L + + + +QK E S L+ +SE L P+S Sbjct: 6 LGERIKAWRLRRGMSQQDLADRMSRSKSWIQKLEGSERHSDPRLSVLREVSEALGVPLSI 65 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + + I+ Sbjct: 66 LIRNDQEPDRSAGRNLEQIEESIA 89 >gi|261368333|ref|ZP_05981216.1| DNA-binding protein [Subdoligranulum variabile DSM 15176] gi|282569629|gb|EFB75164.1| DNA-binding protein [Subdoligranulum variabile DSM 15176] Length = 67 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 20/64 (31%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G+ QE+L L ++ Q + E G I+ I F Sbjct: 3 NRLEEIRKSRGIRQEELAAALSVSRQTIGSLENGRYNPSILLAFKIARYFGMQIEDIFIY 62 Query: 77 SPTV 80 Sbjct: 63 EEEP 66 >gi|209516650|ref|ZP_03265503.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia sp. H160] gi|209502925|gb|EEA02928.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia sp. H160] Length = 326 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 3/124 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ + Sbjct: 28 GEREERDPFLTAMGERVRLLRARRGMTRKTLAAETGLSERHLANLESGVGNASVLVLRQL 87 Query: 63 SEVLESPISFFFDVSPTVCSD---ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + L ++ T ++ I + L F Q R+ Sbjct: 88 AATLNCSLAEVIGDETTASAEWLLIRELLQGRDQAALQRARIALAEMFAQAPRDPHRKDR 147 Query: 120 IELV 123 I L+ Sbjct: 148 IALI 151 >gi|254249104|ref|ZP_04942424.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] gi|124875605|gb|EAY65595.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] Length = 109 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 24/64 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + G +R R SQE+L E G+ V + E+G I+ + IS Sbjct: 43 HFGATVRKLREARTWSQEQLAEHAGLNRSYVGEIERGEAIASIVTADKIARAFDVSISTL 102 Query: 74 FDVS 77 + Sbjct: 103 LPGA 106 >gi|146300604|ref|YP_001195195.1| hypothetical protein Fjoh_2854 [Flavobacterium johnsoniae UW101] gi|146155022|gb|ABQ05876.1| hypothetical protein Fjoh_2854 [Flavobacterium johnsoniae UW101] Length = 131 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 14/141 (9%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ-KYEKGVNRVGASRLQ 60 + KK I+ G+ I+ R +LG+ QE L LG + Q + + + L Sbjct: 1 MTEKK------IHQGRNIKRFREMLGIKQEALAFELGEDWSQKKISILEQKELIETDILA 54 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++++L+ P+ + +I S + + F K++ Sbjct: 55 QVAKILKVPVQAIENFDEEQAINIISNNASFDNCQQPAF-------FNNQPTFNPIDKMV 107 Query: 121 ELVRSIVSSEKKYRTIEEECM 141 EL ++ +K+ E+ + Sbjct: 108 ELYERMLLQQKEMIDKLEKLI 128 >gi|91790200|ref|YP_551152.1| XRE family transcriptional regulator [Polaromonas sp. JS666] gi|91699425|gb|ABE46254.1| transcriptional regulator, XRE family [Polaromonas sp. JS666] Length = 197 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 28/81 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ ++ R +S + L G++ + + E+ + L ++ L I+ F Sbjct: 15 AVGETLKTLRQSQRLSLDDLSRRAGVSKSMLSQIERNEANPTVAILWRLASALGIDITDF 74 Query: 74 FDVSPTVCSDISSEENNVMDF 94 + + + Sbjct: 75 LSAGQAKTAAAAVTVTAAHEM 95 >gi|57234657|ref|YP_181292.1| DNA-binding protein [Dehalococcoides ethenogenes 195] gi|57225105|gb|AAW40162.1| DNA-binding protein [Dehalococcoides ethenogenes 195] Length = 67 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R ++Q +L E +G++ Q + EKG +++ L + I F Sbjct: 6 RIKELRARYNLTQAELAETVGVSRQTMLYLEKGTYNPSLILAHKVAKALHADIDDVF 62 >gi|16800830|ref|NP_471098.1| hypothetical protein lin1762 [Listeria innocua Clip11262] gi|16414249|emb|CAC96993.1| lin1762 [Listeria innocua Clip11262] Length = 146 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 13/139 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RI+ R ++QE+L + + T + YE + A + +++ LE+ + Sbjct: 1 MISNRIKSARKYRKLTQEELAKKINSTKSTISNYENSYSSPSAEVISMLADALETSTDYL 60 Query: 74 FDVSPT----------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI-IEL 122 + + D + E + +S D + + D + R+ + I L Sbjct: 61 LEKTDEIEIKQKYYDLTKKDENDIEKELEKILSNLDSSDGLAFSGEPLDDETRELLSISL 120 Query: 123 VRSI--VSSEKKYRTIEEE 139 RS+ E K + ++ Sbjct: 121 ERSLRFARQESKRKFTPKK 139 >gi|47097448|ref|ZP_00234994.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|254898439|ref|ZP_05258363.1| hypothetical protein LmonJ_01450 [Listeria monocytogenes J0161] gi|254912070|ref|ZP_05262082.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254936397|ref|ZP_05268094.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|47014181|gb|EAL05168.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a F6854] gi|258608988|gb|EEW21596.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|293590037|gb|EFF98371.1| conserved hypothetical protein [Listeria monocytogenes J2818] Length = 309 Score = 43.3 bits (100), Expect = 0.010, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 38/116 (32%), Gaps = 6/116 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G +++ R G+S + L + I + + E+G V + +E + Sbjct: 3 ELGDKLKQARREKGLSLDDLQQITKIQKRYLVAIEEGNYAVMPGKFYARAFIKQYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + FD + + +E + + V R + +++ Sbjct: 63 LDSATLFDEFESEVPETPQQEVVNNEPTRVQSKRNPMPAQSVGNQVNTRNRFFDIL 118 >gi|317120724|gb|ADV02546.1| hypothetical protein SC2_gp125 [Liberibacter phage SC2] gi|317120785|gb|ADV02606.1| hypothetical protein SC2_gp125 [Candidatus Liberibacter asiaticus] Length = 199 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R + +++ + T + K+E G+ + + E + + Sbjct: 32 VGTRIRDIRKSKDKTLDEIAKEANQTESTIWKFENGLCSTSINYALCLRNEYEISFDWIY 91 Query: 75 DVS 77 D Sbjct: 92 DGE 94 Score = 40.2 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 31/66 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R LG+++ + G+ +G+ + YE G + Q+I + + + + Sbjct: 113 VAIGLRLKEIREHLGLNRVEFGKLVGLPCALISMYESGKRTPRITTAQNIKQATKKHLDW 172 Query: 73 FFDVSP 78 + Sbjct: 173 IYFGDE 178 >gi|319650482|ref|ZP_08004622.1| repressor protein [Bacillus sp. 2_A_57_CT2] gi|317397663|gb|EFV78361.1| repressor protein [Bacillus sp. 2_A_57_CT2] Length = 63 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R LG++Q++L + + Q + E IS+ L+ + F Sbjct: 3 NKIKEIRKKLGITQKRLAQECSVARQTINCIENNKYDPTLELAFKISKTLKVKVDELF 60 >gi|313901693|ref|ZP_07835124.1| transcriptional regulator, XRE family [Thermaerobacter subterraneus DSM 13965] gi|313468044|gb|EFR63527.1| transcriptional regulator, XRE family [Thermaerobacter subterraneus DSM 13965] Length = 216 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + VGKRIR R G+S L G++ + + E + + I+ LE ++ Sbjct: 1 MEVGKRIRDLRRQRGISLRDLARRSGVSKAYLSQLENDPARKPSVDVVLRIAAALEVDLA 60 Query: 72 FF 73 Sbjct: 61 EL 62 >gi|307608954|emb|CBW98364.1| hypothetical protein LPW_02171 [Legionella pneumophila 130b] Length = 375 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 38/88 (43%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R G++++ L E + +T +++ +E+ N+ ++ Q I+++ P +FF +P + Sbjct: 15 ARERAGLTEDLLAERMHVTVEKIISWEEEKNKPTFTQAQKIAQITHIPFGYFFLENPPIE 74 Query: 82 SDISSEENNVMDFISTPDGLQLNRYFIQ 109 + V L L Q Sbjct: 75 KLPIPDLRTVGSTKIQEPSLDLLDMIKQ 102 >gi|307352509|ref|YP_003893560.1| XRE family transcriptional regulator [Methanoplanus petrolearius DSM 11571] gi|307155742|gb|ADN35122.1| transcriptional regulator, XRE family [Methanoplanus petrolearius DSM 11571] Length = 64 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI++ R + ++QE L + LG+T Q + EKG I++ I F Sbjct: 3 NRIKVFRAMHDLTQEGLAKELGVTRQTILAIEKGKYDPSLDLAFKIAKYFNVKIEEVF 60 >gi|262283472|ref|ZP_06061238.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|262260963|gb|EEY79663.1| transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 170 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 4/97 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + F Sbjct: 9 GPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLFG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 S + + S E+N + ++ + I+D Sbjct: 69 TSKEIELEKSVLESNEY----SDKVSEILKAVKYIED 101 >gi|228902066|ref|ZP_04066230.1| HTH-type transcriptional regulator PuuR [Bacillus thuringiensis IBL 4222] gi|228857492|gb|EEN01988.1| HTH-type transcriptional regulator PuuR [Bacillus thuringiensis IBL 4222] Length = 68 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GK++ L R G SQ +LGE L + V E G + ++L IS + + I F Sbjct: 6 GKKLYLLRKNRGFSQRELGELLNCSHSLVNLMENGKLQPTTAKLLGISSIFKVSIDELF 64 >gi|229084977|ref|ZP_04217229.1| hypothetical protein bcere0022_16010 [Bacillus cereus Rock3-44] gi|228698293|gb|EEL51026.1| hypothetical protein bcere0022_16010 [Bacillus cereus Rock3-44] Length = 193 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G I+ R G++ ++L E ++ + + E+G+ + L+ +++V E ++ Sbjct: 1 MNIGMEIKKLRAEKGITLKELSEKSELSVGFLSQLERGLTTIAVDSLEKLADVFEVHLTH 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FFD P D+ S G +++ ++ ++IE++ +KK Sbjct: 61 FFD-YPLKRKDMVLRSYEQEIMDSVEGGCIKYSLSTNLENKQLVPRLIEIL-----PQKK 114 Query: 133 YRTIE 137 I Sbjct: 115 DEEIL 119 >gi|229100661|ref|ZP_04231509.1| hypothetical protein bcere0020_58310 [Bacillus cereus Rock3-29] gi|229107528|ref|ZP_04237280.1| hypothetical protein bcere0019_58820 [Bacillus cereus Rock3-28] gi|229119263|ref|ZP_04248568.1| hypothetical protein bcere0017_54990 [Bacillus cereus Rock1-3] gi|228664188|gb|EEL19724.1| hypothetical protein bcere0017_54990 [Bacillus cereus Rock1-3] gi|228675920|gb|EEL31013.1| hypothetical protein bcere0019_58820 [Bacillus cereus Rock3-28] gi|228682754|gb|EEL36784.1| hypothetical protein bcere0020_58310 [Bacillus cereus Rock3-29] Length = 64 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 3 NQIYELRTENNISQGALADKCSVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60 >gi|206970675|ref|ZP_03231627.1| DNA-binding protein [Bacillus cereus AH1134] gi|229178189|ref|ZP_04305560.1| Transcriptional regulator, Xre [Bacillus cereus 172560W] gi|206734311|gb|EDZ51481.1| DNA-binding protein [Bacillus cereus AH1134] gi|228605319|gb|EEK62769.1| Transcriptional regulator, Xre [Bacillus cereus 172560W] Length = 404 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E LE +SF Sbjct: 4 LGEKIKTLRKEKKLTQTELV-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDEGEIVELIQ 74 >gi|160877535|ref|YP_001556851.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|160863057|gb|ABX51591.1| transcriptional regulator, XRE family [Shewanella baltica OS195] gi|315269733|gb|ADT96586.1| Protein of unknown function DUF3612 [Shewanella baltica OS678] Length = 509 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A L I+ V Sbjct: 13 FLGTKIRNLRKRNNLTMEDLSARCIRVDAGSAPSVSYLSMIERGKRVPSAGMLAVIAAVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + +F D P + Sbjct: 73 QKDAEWFLDDVPEENAITPD 92 >gi|50085480|ref|YP_046990.1| hypothetical protein ACIAD2393 [Acinetobacter sp. ADP1] gi|49531456|emb|CAG69168.1| hypothetical protein; putative transcriptional regulator [Acinetobacter sp. ADP1] Length = 110 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 38/84 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ +R R G +Q++L + + + E G + L+++++ +S Sbjct: 1 MDIGRAVRFLRKRQGWTQQQLADFSHTSKSNISNLENGNQGYSPAILEYLAKAFNCSVSQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 F ++ + ++ + ++ I Sbjct: 61 IFLLAENMDNEGNLLKDWQHMPID 84 >gi|326388765|ref|ZP_08210354.1| XRE family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326206789|gb|EGD57617.1| XRE family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 190 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 35/89 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR RR LGM+ + L G++ + + E+ + L I+ L +S+F Sbjct: 16 IGAAIRDRRKRLGMTLQALATASGLSAPFLSQVERDLAMPSLVSLTAIAAALGVEMSYFV 75 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 P + ++ + +L Sbjct: 76 GTPPPGQVVRRGNQPELLQIGAPAVYARL 104 >gi|319650350|ref|ZP_08004493.1| DNA-binding protein [Bacillus sp. 2_A_57_CT2] gi|317397911|gb|EFV78606.1| DNA-binding protein [Bacillus sp. 2_A_57_CT2] Length = 122 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 1/111 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R ++Q++L + + + KYE G + IS L+ P S Sbjct: 4 IGHNIKACRERANITQQQLALKVRVGTGTIAKYENGDQIPDTQTVLKISTALDIPASELL 63 Query: 75 D-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + S I E ++ I T + R + + + + L Sbjct: 64 EQELQKGQSGIDYEIEQLVREIGTKKAKLILRKAKEFSEEDFLRVMQMLFE 114 >gi|306830957|ref|ZP_07464119.1| XRE family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977847|ref|YP_004287563.1| transcriptional regulator cro/C1-type family [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304426980|gb|EFM30090.1| XRE family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177775|emb|CBZ47819.1| transcriptional regulator cro/C1-type family [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 121 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 24/67 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q +L + ++ Q + E+ I+ + P+ F + Sbjct: 55 NRLKELRARDGLNQTQLAKLAKVSRQTISLLERNEYTPSVIIALRIAHIFNEPVENVFSL 114 Query: 77 SPTVCSD 83 Sbjct: 115 DEEGEKG 121 >gi|295697360|ref|YP_003590598.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295412962|gb|ADG07454.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 70 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R GM+ +L E G++ + E G +L I+ LE ++ + Sbjct: 8 GERLKELRRERGMTVRELAEKAGVSQSYIYAVEAGTRGSRVGKLIKIARALEVDLAALVE 67 Query: 76 VSP 78 P Sbjct: 68 DEP 70 >gi|325679351|ref|ZP_08158936.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324108948|gb|EGC03179.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 71 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 2/69 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 RI+ R ++Q++L L +T Q + E G ++ I F F Sbjct: 3 NRIQELRKARKVTQQELANALCVTRQTIISLENGRYNASLVLAHKAAQFFGMTIEELFIF 62 Query: 75 DVSPTVCSD 83 + + + Sbjct: 63 EGDEDLKGE 71 >gi|240140512|ref|YP_002964992.1| hypothetical protein MexAM1_META1p4053 [Methylobacterium extorquens AM1] gi|240010489|gb|ACS41715.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 87 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R+ G+SQE+L GI V + E+G V S L+ ++ L P++ Sbjct: 7 IGWNLRRLRVAQGLSQERLALAAGIDRAYVGRVERGSENVTISTLEAMARALAVPVAHLL 66 Query: 75 DVSPTVCSDISS 86 + Sbjct: 67 VEPDGEAERPAP 78 >gi|229100015|ref|ZP_04230935.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29] gi|228683443|gb|EEL37401.1| Transcriptional regulator, XRE [Bacillus cereus Rock3-29] Length = 66 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 28/66 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RI + R G +QE+L + +G++ Q + EK I+ E PI+ Sbjct: 1 MLHNRIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANEFEKPITDV 60 Query: 74 FDVSPT 79 FD Sbjct: 61 FDYQEE 66 >gi|229190704|ref|ZP_04317700.1| Transcriptional regulator [Bacillus cereus ATCC 10876] gi|228592837|gb|EEK50660.1| Transcriptional regulator [Bacillus cereus ATCC 10876] Length = 116 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 45/118 (38%), Gaps = 7/118 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R+ M+QE+ G+ + +T V K+E G ++ I++ P+++ + + Sbjct: 6 RIKQIRLEHKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFAVPVNYLYGEN 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 D + E + + +++ + +++ KK Sbjct: 66 NEANKDDNKYEKFKEIMAW-------LEPLPKDKEDMALDQMLAIAQALNKHHKKMEK 116 >gi|167908369|ref|ZP_02495574.1| DNA-binding protein [Burkholderia pseudomallei NCTC 13177] Length = 202 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 11/89 (12%), Positives = 29/89 (32%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R + + L G++ + + E+ + ++ L + F Sbjct: 25 VGEQIQRLRNERKFTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGISLDELF 84 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 + +++ QL Sbjct: 85 AQPKAPETIRVDGPHDIPTLAGHDAQYQL 113 >gi|37527450|ref|NP_930794.1| hypothetical protein plu3581 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527459|ref|NP_930803.1| hypothetical protein plu3590 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786885|emb|CAE15954.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786894|emb|CAE15963.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 128 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 41/100 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R M+Q +L E L + + ++E+G + + I++VL+S + + Sbjct: 20 RLKEAREARKMTQARLAELLNVDRRVYNRWERGASVPQLDAVVRIAQVLQSSLDSLVGLE 79 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 P I + + + + I + D +++ Sbjct: 80 PMTPPQIHNPRLQALVMQMDSLSDEDQQALIVLMDSLLKR 119 >gi|77412611|ref|ZP_00788895.1| Helix-turn-helix domain protein [Streptococcus agalactiae CJB111] gi|77161340|gb|EAO72367.1| Helix-turn-helix domain protein [Streptococcus agalactiae CJB111] Length = 127 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 35/87 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK+I R + S E+ GE +G++ V YEKG + I + + P Sbjct: 7 IRLGKKIHDLRKLNNYSMEEFGERIGVSRGVVNNYEKGRVAPRPKIQKKILSLTDKPDQD 66 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 + + E +D +S P Sbjct: 67 LTEFIFGTPREYLFEIFEGIDSLSNPF 93 >gi|172057454|ref|YP_001813914.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989975|gb|ACB60897.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 69 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G +QE+ + +G+T Q + EKG I+ V E P+ F + Sbjct: 5 NRVKSLRSSNGWTQEQFAQMIGVTRQTIISLEKGSYTPSLLLAMQITRVFERPVESIFYL 64 Query: 77 SPTVC 81 Sbjct: 65 EEESE 69 >gi|47095311|ref|ZP_00232922.1| repressor protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|217965156|ref|YP_002350834.1| hypothetical protein LMHCC_1879 [Listeria monocytogenes HCC23] gi|224499618|ref|ZP_03667967.1| hypothetical protein LmonF1_07939 [Listeria monocytogenes Finland 1988] gi|254828832|ref|ZP_05233519.1| transcriptional regulator [Listeria monocytogenes FSL N3-165] gi|254830262|ref|ZP_05234917.1| hypothetical protein Lmon1_02837 [Listeria monocytogenes 10403S] gi|254900016|ref|ZP_05259940.1| hypothetical protein LmonJ_09385 [Listeria monocytogenes J0161] gi|254911432|ref|ZP_05261444.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254935757|ref|ZP_05267454.1| transcriptional regulator [Listeria monocytogenes F6900] gi|255026248|ref|ZP_05298234.1| hypothetical protein LmonocytFSL_07720 [Listeria monocytogenes FSL J2-003] gi|284801080|ref|YP_003412945.1| hypothetical protein LM5578_0829 [Listeria monocytogenes 08-5578] gi|284994222|ref|YP_003415990.1| hypothetical protein LM5923_0784 [Listeria monocytogenes 08-5923] gi|47016382|gb|EAL07304.1| repressor protein, putative [Listeria monocytogenes str. 1/2a F6854] gi|217334426|gb|ACK40220.1| conserved domain protein [Listeria monocytogenes HCC23] gi|258601245|gb|EEW14570.1| transcriptional regulator [Listeria monocytogenes FSL N3-165] gi|258608344|gb|EEW20952.1| transcriptional regulator [Listeria monocytogenes F6900] gi|284056642|gb|ADB67583.1| hypothetical protein LM5578_0829 [Listeria monocytogenes 08-5578] gi|284059689|gb|ADB70628.1| hypothetical protein LM5923_0784 [Listeria monocytogenes 08-5923] gi|293589374|gb|EFF97708.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|307570284|emb|CAR83463.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes L99] Length = 68 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++++ R+ +SQE+L + + ++ Q + E G + I + L + F Sbjct: 5 KMKVARVEKDISQEELAKLIHVSRQTISSVEAGNYNPTLNLCIAICKALGKTLDDLFWEE 64 Query: 78 PT 79 Sbjct: 65 DD 66 >gi|15675737|ref|NP_269911.1| putative transcription regulator [Streptococcus pyogenes M1 GAS] gi|19746847|ref|NP_607983.1| transcription regulator [Streptococcus pyogenes MGAS8232] gi|21911201|ref|NP_665469.1| putative transcription regulator [Streptococcus pyogenes MGAS315] gi|28896578|ref|NP_802928.1| transcription regulator [Streptococcus pyogenes SSI-1] gi|50915002|ref|YP_060974.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10394] gi|56808043|ref|ZP_00365843.1| COG1476: Predicted transcriptional regulators [Streptococcus pyogenes M49 591] gi|71911461|ref|YP_283011.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS5005] gi|94991225|ref|YP_599325.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10270] gi|94993168|ref|YP_601267.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS2096] gi|139474424|ref|YP_001129140.1| DNA-binding protein [Streptococcus pyogenes str. Manfredo] gi|209560078|ref|YP_002286550.1| Putative transcription regulator [Streptococcus pyogenes NZ131] gi|306826624|ref|ZP_07459929.1| transcriptional regulator [Streptococcus pyogenes ATCC 10782] gi|13622957|gb|AAK34632.1| putative transcription regulator [Streptococcus pyogenes M1 GAS] gi|19749087|gb|AAL98482.1| putative transcription regulator [Streptococcus pyogenes MGAS8232] gi|21905413|gb|AAM80272.1| putative transcription regulator [Streptococcus pyogenes MGAS315] gi|28811832|dbj|BAC64761.1| putative transcription regulator [Streptococcus pyogenes SSI-1] gi|50904076|gb|AAT87791.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10394] gi|71854243|gb|AAZ52266.1| transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS5005] gi|94544733|gb|ABF34781.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10270] gi|94546676|gb|ABF36723.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS2096] gi|134272671|emb|CAM30942.1| putative DNA-binding protein [Streptococcus pyogenes str. Manfredo] gi|209541279|gb|ACI61855.1| Putative transcription regulator [Streptococcus pyogenes NZ131] gi|304431202|gb|EFM34206.1| transcriptional regulator [Streptococcus pyogenes ATCC 10782] Length = 68 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R +SQ+ L + +G++ Q + EKG + I VL+ + F + Sbjct: 5 KLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIAICRVLDKTLDDLFWEA 64 Query: 78 PTV 80 Sbjct: 65 DDS 67 >gi|330447705|ref|ZP_08311353.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491896|dbj|GAA05850.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 104 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R GM+Q + + L I Q E G + L ++ + ++FF P Sbjct: 11 LKQSREEHGMTQVDVAKSLNIARQTYLDLEYGRTQPRLDTLLTLASLFNKSVAFFAGERP 70 Query: 79 T 79 + Sbjct: 71 S 71 >gi|302668691|ref|YP_003833139.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302397655|gb|ADL36557.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 238 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 11/108 (10%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECL--------GITFQQVQKYEKGVNRVGASR 58 PN V RI+L R LG++Q++ ++ + +E G Sbjct: 2 NPNEVTA---ARIKLLRSGLGLNQQEFANQFSEFINRTETLSMMTISNWETGRKLPPTDT 58 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + + + + +S +S+ + I + N+ Sbjct: 59 IIWMCKFFNVSADYLLGLSSENAPSGASKSKKKVTSIDEQIEIPFNKL 106 >gi|300857155|ref|YP_003782139.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300437270|gb|ADK17037.1| transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 371 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 11/112 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K + +R ++Q+KL E +G++ V K+E G + + L ++ I Sbjct: 4 INIAKTLVAKRKEKAITQDKLAEYIGVSKASVSKWETGQSYPDITFLPQLAAYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P + D +L F +V K E+++ Sbjct: 64 LIGYEPQMTKDDIK-----------KLYNKLASEFSSKPFEEVLDKCHEIIK 104 >gi|229135978|ref|ZP_04264739.1| hypothetical protein bcere0014_48550 [Bacillus cereus BDRD-ST196] gi|229164110|ref|ZP_04292046.1| hypothetical protein bcere0009_48720 [Bacillus cereus R309803] gi|228619346|gb|EEK76236.1| hypothetical protein bcere0009_48720 [Bacillus cereus R309803] gi|228647520|gb|EEL03594.1| hypothetical protein bcere0014_48550 [Bacillus cereus BDRD-ST196] Length = 65 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 5 NKIKELRKQHHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGMKVEEIFTL 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|226228890|ref|YP_002762996.1| Xre family DNA binding protein [Gemmatimonas aurantiaca T-27] gi|226092081|dbj|BAH40526.1| Xre family DNA binding protein [Gemmatimonas aurantiaca T-27] Length = 84 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 1/78 (1%) Query: 15 VGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G IR R G M+QE L + +GIT Q V E ++ + Sbjct: 5 IGNHIRQLRFAHGQMTQEALAQAVGITRQTVIALEAERYAPSLDLALRLAAEFGIGVDRV 64 Query: 74 FDVSPTVCSDISSEENNV 91 F + Sbjct: 65 FFRRDADGMPPAPLPTEP 82 >gi|261366836|ref|ZP_05979719.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|282570937|gb|EFB76472.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] Length = 266 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++ E+L E + ++ + YE K + + +++ + Sbjct: 5 IQERLKDLRVERGLTLEQLEEQVNLSKSALGSYEAKDFKDISHYAIIKLAKFYGVTADYL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 +S T + D + D ++L + Sbjct: 65 LGLSETRNHPNADLA----DLCLSDDMIELLK 92 >gi|162455328|ref|YP_001617695.1| putative HTH-type transcriptional regulator ydcN [Sorangium cellulosum 'So ce 56'] gi|161165910|emb|CAN97215.1| Putative HTH-type transcriptional regulator ydcN [Sorangium cellulosum 'So ce 56'] Length = 148 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 45/117 (38%), Gaps = 2/117 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + VG+ IR+ R + G++ + E ++ +++ E+G +G L I++ L Sbjct: 1 MSDALPKEVGRAIRVLRQLHGLTYAEFAEKARLSATYLRQVERGERDLGLGALALIAQGL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + + L I+ DD +Q I+ L+ Sbjct: 61 NCDARLLLPGDGRSPVSAVVADRFDRAPEALQEA--LLFLLIEPDDSPKKQAILALI 115 >gi|83648919|ref|YP_437354.1| transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83636962|gb|ABC32929.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 106 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISFF 73 +G +I+ R G++ E+L E G + + E GV R A +L I++ L+ F Sbjct: 5 LGAKIKELRKKKGLTLEQLAEKTGSGKSYIWEIENKGVKRPSAEKLTLIAKALDVTTEFL 64 Query: 74 FDVSPTVCSDISSEE 88 D S ++ +E Sbjct: 65 VDNSQAEITEDQEKE 79 >gi|148257862|ref|YP_001242447.1| anaerobic benzoate catabolism transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410035|gb|ABQ38541.1| transcriptional regulator, XRE family with shikimate kinase activity [Bradyrhizobium sp. BTAi1] Length = 342 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 33/76 (43%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ +G R+R R + GMS++ L + G++ + + + E G V L+ ++EV Sbjct: 30 PDRFLSELGARVRTMRAVRGMSRKVLAQTSGVSERYIAQLESGQGNVSIMLLRRLAEVAG 89 Query: 68 SPISFFFDVSPTVCSD 83 + D Sbjct: 90 VQLEDLVADPAGRPKD 105 >gi|325977463|ref|YP_004287179.1| SPBc2 prophage-derived HTH-type transcriptional regulator yonR [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177391|emb|CBZ47435.1| SPBc2 prophage-derived uncharacterized HTH-type transcriptional regulator yonR [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 110 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 37/98 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RIR R +SQEKL E G+ + +Q E L+ + L + F Sbjct: 9 YISFRIRECRKEKKLSQEKLSEMAGLGIKAIQNIETQKYDFKIQTLEKVIGALNISVEDF 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 FD + + + + +S +L F +I Sbjct: 69 FDFQFSENAVSLETLSKNISSLSNEKQQKLISSFNEIT 106 >gi|308179910|ref|YP_003924038.1| putative repressor protein [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045401|gb|ADN97944.1| putative repressor protein [Lactobacillus plantarum subsp. plantarum ST-III] Length = 113 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 12/103 (11%), Positives = 35/103 (33%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI R SQ L + L ++ + +E + L +++ + Sbjct: 4 GQRIAEMRKRKDESQNVLSKVLHVSPSTIGMWETDQRAIKDEDLSKLADHFGVTTDYILG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + + + + + + Q +I+ + +++ Sbjct: 64 RKVDLGNVPVAAHIDGDFEDLSDEERQEINDYIEFKKAQFKKR 106 >gi|300777929|ref|ZP_07087787.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300503439|gb|EFK34579.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 262 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 IR R +SQ+ + + L I+ + KYE G++ L IS+ I V Sbjct: 6 NNIRFLRARRKLSQQNVADELMISRVRYSKYENGISEPPIELLVKISKYFHVSIDLILSV 65 Query: 77 SPTV 80 Sbjct: 66 DLEK 69 >gi|295399883|ref|ZP_06809864.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294978286|gb|EFG53883.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 294 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +GKR++ R +S ++L E I + + E+G + +E + Sbjct: 3 ELGKRLKEAREAKNISLDELQEMTKIQKRYLIGIEEGNYAIMPGNFYVRAFIKQYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEE 88 F+ EE Sbjct: 63 LDPEEIFEEYKQDIPQSYQEE 83 >gi|293115444|ref|ZP_05791516.2| DNA-binding protein [Butyrivibrio crossotus DSM 2876] gi|292809724|gb|EFF68929.1| DNA-binding protein [Butyrivibrio crossotus DSM 2876] Length = 202 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 31/80 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G I R G +Q+ L E LGI+ + + K+E+G S L + L+ ++ Sbjct: 5 IKIGGFIAEERKRKGYTQKILSEKLGISDKTISKWERGNGFPEVSLLIPLCSELDITVNE 64 Query: 73 FFDVSPTVCSDISSEENNVM 92 + M Sbjct: 65 LLSGERVSEEQYRKKAEENM 84 >gi|291523416|emb|CBK81709.1| Helix-turn-helix [Coprococcus catus GD/7] Length = 209 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ ++ + QL + +D + ++ +++ Sbjct: 70 KGETDEYETDITDKKELQIRDAMGDILKQLPLDLSKKEDAFSKDLLLLMLKQ 121 >gi|284046640|ref|YP_003396980.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950861|gb|ADB53605.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 88 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 33/78 (42%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P +G+ +R R+ G+SQE+LG I V E+G L + L+ Sbjct: 6 SPEHRALGRAVRELRVRRGLSQEQLGMASEIHRNYVGAIERGEINPTFRVLLKLERGLDL 65 Query: 69 PISFFFDVSPTVCSDISS 86 +S +V +++ Sbjct: 66 SLSRLLEVYERNVEEMTD 83 >gi|257066291|ref|YP_003152547.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256798171|gb|ACV28826.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 73 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 31/63 (49%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + VG R++ R+ G+SQ+++ + L +T + YE G + ++ S + + + Sbjct: 9 NKKVGNRLKKLRLSRGLSQKEMADILKVTRPLISMYEAGNRMPSPNIMKKYSIIFKKSVD 68 Query: 72 FFF 74 F Sbjct: 69 DIF 71 >gi|237713409|ref|ZP_04543890.1| transcriptional regulator [Bacteroides sp. D1] gi|262406782|ref|ZP_06083331.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294646020|ref|ZP_06723685.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294806040|ref|ZP_06764900.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] gi|229446648|gb|EEO52439.1| transcriptional regulator [Bacteroides sp. D1] gi|262355485|gb|EEZ04576.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292638591|gb|EFF56944.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294446759|gb|EFG15366.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] Length = 133 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 6/126 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++G+ I+ R+ LGM QE L LG++ Q V + + + L I+ VL Sbjct: 12 RHIGRNIQKIRVYLGMKQEALAADLGVS-QNVISKIEKESEIEEGLLNKIASVLGISAEV 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D N+ D +P + Q + KIIEL ++ SE++ Sbjct: 71 IKDFDVERA---IYNINSYKDATISPGAIAAVHVTSQ--QINPVDKIIELYERLLQSERE 125 Query: 133 YRTIEE 138 + + Sbjct: 126 KIELLK 131 >gi|66396007|ref|YP_240340.1| ORF046 [Staphylococcus phage ROSA] gi|62636427|gb|AAX91538.1| ORF046 [Staphylococcus phage ROSA] Length = 107 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 12/101 (11%), Positives = 38/101 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++ +G+ + +YE G ++ + I+ L+ + Sbjct: 6 EIGKLIKQLRKENNVNLTDFATKIGVNKSTLSRYENGSGKIPMEDIAEIANALKVTPEYL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + +++ ++ ++ + ++ Y I + Sbjct: 66 LLKNRQTENEVQHRAAHLEGELTDDEWQRVLDYADYIRSKR 106 >gi|81427764|ref|YP_394763.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609405|emb|CAI54451.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 68 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 24/68 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RI++ R +Q L E GI+ Q V EK I++V I+ Sbjct: 1 MIQNRIKVLRAERNWTQADLAERTGISRQAVISIEKYKYTPSLELAFKIAQVFGVEITTV 60 Query: 74 FDVSPTVC 81 F Sbjct: 61 FSPEEDSK 68 >gi|103486719|ref|YP_616280.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98976796|gb|ABF52947.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 261 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+++R R+ MSQ L I+ + + E G +R A LQ I++ LE P Sbjct: 6 VGEQLREWRVRRRMSQMDLALESEISTRHLSFIETGRSRPSALMLQRIADCLEVP 60 >gi|300697493|ref|YP_003748154.1| transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074217|emb|CBJ53762.1| putative transcriptional regulator [Ralstonia solanacearum CFBP2957] Length = 201 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG ++ R +S ++L G++ + + E+ + + L ++ L ++ F Sbjct: 19 AVGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDF 78 Query: 74 FDVSPTVCSDI 84 Sbjct: 79 LAGGDGERPGT 89 >gi|295133833|ref|YP_003584509.1| PbsX family transcriptional regulator [Zunongwangia profunda SM-A87] gi|294981848|gb|ADF52313.1| PbsX family transcriptional regulator [Zunongwangia profunda SM-A87] Length = 64 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 23/62 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI++ R ++Q +L + ++ Q + EKG I+ + I F Sbjct: 3 NRIKVLRAEKNITQAELANRVEVSRQTINAIEKGKFDPSLPLAFKIARLFNLKIEDIFQD 62 Query: 77 SP 78 Sbjct: 63 EE 64 >gi|268608040|ref|ZP_06141770.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 68 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q++L + L +T Q + E G + ++ I F Sbjct: 3 NKIQELRKARKVTQQELADALSVTRQTIISLENGKYNASLTLAHKAAQFFGITIEELFIF 62 Query: 77 SPTV 80 Sbjct: 63 EDEE 66 >gi|260102606|ref|ZP_05752843.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|260083589|gb|EEW67709.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 205 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 11/100 (11%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++++ R++ G++QE++ + ++ + E+ N + ++L + ++ Sbjct: 1 MTIGQQLKKTRLLFGLTQEEMSAGI-VSKSFYSRVERDKNAITINKLIAMLNANNISLND 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 FF + + + + ++L++ + Sbjct: 60 FFRTFDNEGLPELKVQRKIYTAYNERNIIELHQIEKSLSS 99 >gi|261415442|ref|YP_003249125.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371898|gb|ACX74643.1| transcriptional regulator, XRE family [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326318|gb|ADL25519.1| DNA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 149 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 36/97 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V + + R ++Q+++ E L +T Q V ++E G + L+ IS I+ Sbjct: 1 MEVREVLLKLRSNQNLTQDQMAERLHVTRQAVSRWETGETQPNTEMLKVISREFNVSINT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + IS + N + + Sbjct: 61 LLGAPRQLFCQCCGMPLSEDSMISREPSGEFNEDYCK 97 >gi|225011082|ref|ZP_03701546.1| transcriptional regulator, XRE family [Flavobacteria bacterium MS024-3C] gi|225004802|gb|EEG42760.1| transcriptional regulator, XRE family [Flavobacteria bacterium MS024-3C] Length = 64 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 I+ R ++QE L +G++ Q + EKG ++ + +PI F Sbjct: 5 IKELRARHQLTQEDLAHKVGVSRQTINAIEKGKFDPSLPLAFKLAHLFHTPIEGIFT 61 >gi|218288780|ref|ZP_03493043.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218241138|gb|EED08314.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 167 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+RI R G++Q KL E ++ + YE + L I+E L ++ Sbjct: 10 VGERIAQLRKERGLTQAKLAERARLSTSAIAMYETNRRQPDERTLAQIAEALGVEMAQI 68 >gi|207724614|ref|YP_002255011.1| hypothetical protein RSMK02981 [Ralstonia solanacearum MolK2] gi|206589836|emb|CAQ36797.1| hypothetical protein RSMK02981 [Ralstonia solanacearum MolK2] Length = 201 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG ++ R +S ++L G++ + + E+ + + L ++ L ++ F Sbjct: 19 AVGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDF 78 Query: 74 FDVSPTVCSDI 84 Sbjct: 79 LAGGDGERPGT 89 >gi|167772022|ref|ZP_02444075.1| hypothetical protein ANACOL_03396 [Anaerotruncus colihominis DSM 17241] gi|167665820|gb|EDS09950.1| hypothetical protein ANACOL_03396 [Anaerotruncus colihominis DSM 17241] Length = 79 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 32/66 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R+ ++Q+ + LG++ Q +YE+G + L ++++ ++ + + + Sbjct: 7 RRLYDLRIDHDLTQKDVSTYLGMSQPQYYRYERGYRDIPTHVLIALAKLYDTSVDYILGL 66 Query: 77 SPTVCS 82 + Sbjct: 67 TDDPQP 72 >gi|163791646|ref|ZP_02186042.1| hypothetical protein CAT7_03489 [Carnobacterium sp. AT7] gi|159873068|gb|EDP67176.1| hypothetical protein CAT7_03489 [Carnobacterium sp. AT7] Length = 66 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R+ SQ + E L I+ Q + K+E ++ L +S + I Sbjct: 1 MLLGKKLKSSRVKKKYSQNDVAEQLHISRQSISKWENDISYPELDNLVKLSTYYQVSIDH 60 Query: 73 FFDVSP 78 P Sbjct: 61 LLKEKP 66 >gi|149915490|ref|ZP_01904017.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b] gi|149810779|gb|EDM70620.1| DNA-binding protein, putative [Roseobacter sp. AzwK-3b] Length = 215 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 33/69 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ L + LG + + + E+ ++ S L+ I+E L P+S F Sbjct: 37 LGADLRALRKARGLTLADLADSLGRSVGWLSQVERDLSEPSISDLRQIAEQLGVPMSLLF 96 Query: 75 DVSPTVCSD 83 + + + Sbjct: 97 GHASALADE 105 >gi|126738636|ref|ZP_01754341.1| DNA binding protein, putative [Roseobacter sp. SK209-2-6] gi|126720435|gb|EBA17141.1| DNA binding protein, putative [Roseobacter sp. SK209-2-6] Length = 188 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 3/76 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + R++ R G+S E + G++ V + E+G + + L Sbjct: 1 MTEKT---DDILTLLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLW 57 Query: 61 HISEVLESPISFFFDV 76 +++ L+ + + Sbjct: 58 NLTRALQVDFAGLLED 73 >gi|150399074|ref|YP_001322841.1| XRE family transcriptional regulator [Methanococcus vannielii SB] gi|150011777|gb|ABR54229.1| transcriptional regulator, XRE family [Methanococcus vannielii SB] Length = 66 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R ++QE+LG+ +G+ + + EKG I++ L S I F Sbjct: 4 RIKEFRAKYNITQEELGKKVGVRRETINFLEKGKYNPSLKLAYLIAKTLNSTIDELFIFD 63 Query: 78 PTV 80 Sbjct: 64 EDE 66 >gi|124007647|ref|ZP_01692351.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134] gi|123986945|gb|EAY26710.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134] Length = 275 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 1/99 (1%) Query: 17 KRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 K +R R ++Q L E LG++ + YE G L I++ I + Sbjct: 5 KNLRYIREEKYKITQGALAEILGVSRSALSAYEDGRAEPRILLLIKIAQYFAVSIDEMVN 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 V+ ++ T +++NR + K Sbjct: 65 VNFAEAEQAYVTRIEQLNKYITAHQIKINRVQTEHSTPK 103 >gi|73697811|gb|AAZ81511.1| PlcR [Bacillus weihenstephanensis] Length = 287 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 43/105 (40%), Gaps = 3/105 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q++L + + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRAMRGLTQKQLSDNI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +V + + + +S Q + + ++K Sbjct: 65 EVLIYSDIERKKLFKDRIQMLSKKK--QYAEIYSIVSSELKKEKF 107 >gi|163938818|ref|YP_001643702.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861015|gb|ABY42074.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 112 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 2/98 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R +SQE+LGE GI + E+G V L +++ L+ + F Sbjct: 7 LGERIRFLRKEKNLSQERLGELSGIHTNHIGAIERGEKNVTLESLAKVTKGLDITLEELF 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 D + N +M+ + + I + Sbjct: 67 RYL--QPMDKLDDLNTIMELLLSRTSEDHALVLHLIKN 102 >gi|83747823|ref|ZP_00944856.1| Transcriptional regulator, MerR family [Ralstonia solanacearum UW551] gi|207739254|ref|YP_002257647.1| hypothetical protein RSIPO_03955 [Ralstonia solanacearum IPO1609] gi|83725470|gb|EAP72615.1| Transcriptional regulator, MerR family [Ralstonia solanacearum UW551] gi|206592627|emb|CAQ59533.1| hypothetical protein RSIPO_03955 [Ralstonia solanacearum IPO1609] Length = 201 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 26/71 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG ++ R +S ++L G++ + + E+ + + L ++ L ++ F Sbjct: 19 AVGMALQALRQRQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDF 78 Query: 74 FDVSPTVCSDI 84 Sbjct: 79 LAGGDGERPGT 89 >gi|312279272|gb|ADQ63929.1| Transcriptional regulator, xre family [Streptococcus thermophilus ND03] Length = 170 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 3/111 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + F Sbjct: 9 GPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLFG 68 Query: 76 VSPT-VCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIELVR 124 S E N D +S ++ F++ D + + ++ L R Sbjct: 69 TSKEIELEKSVLESNEYSDKVSEILKAVKYIENFLE-TDGQYLEDLLYLTR 118 >gi|310826136|ref|YP_003958493.1| hypothetical protein ELI_0514 [Eubacterium limosum KIST612] gi|308737870|gb|ADO35530.1| hypothetical protein ELI_0514 [Eubacterium limosum KIST612] Length = 220 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 3/86 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + P VG+RI+ RR+ L +S +LG+ + + +Q+YE + + + Sbjct: 1 MKEETMFTP--KQVGERIKERRIELKLSMPELGKRISVNKSTIQRYEADGVDPKRTMIIN 58 Query: 62 -ISEVLESPISFFFDVSPTVCSDISS 86 ++E L + + +S D + Sbjct: 59 GLAEALLTTPEWLTGLSEEKEYDAKT 84 >gi|291282703|ref|YP_003499521.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Escherichia coli O55:H7 str. CB9615] gi|290762576|gb|ADD56537.1| SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Escherichia coli O55:H7 str. CB9615] Length = 238 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 34/68 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +RIR RR +G++QE++ + +GIT V K+E G ++ L +S++L + Sbjct: 19 ISERIRNRRKDVGLTQEQVAKAIGITRVSVTKWENGSSKPDGENLHLLSKLLSKSPEWIL 78 Query: 75 DVSPTVCS 82 Sbjct: 79 YGKDDHDK 86 >gi|260437613|ref|ZP_05791429.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|292809966|gb|EFF69171.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] Length = 117 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 1/113 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + N+GKR+R R +SQ+ + + LGI +Q Q+YE G + + +L Sbjct: 1 MSNDNDKDQEYQKNMGKRLRKIRKENALSQDDVADALGICTKQYQRYEYGDSAISCEKLS 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + E + + DI N+ ++ RY ++I + Sbjct: 61 ILEESFHFDVRYIVTGKREQI-DIDRYVVNMPWKEKRDFFERMARYVLRILNN 112 >gi|255034760|ref|YP_003085381.1| helix-turn-helix domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254947516|gb|ACT92216.1| helix-turn-helix domain protein [Dyadobacter fermentans DSM 18053] Length = 144 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 9/145 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ-KYEKGVNRVGASRL 59 M ++++ + + G+ I+ R +LG+ QE L LG + Q + + V L Sbjct: 1 MSTSQEMTKHI--HHGRNIKRFREMLGIKQEGLAFELGGEWSQKRVSLLEQKEVVEQEIL 58 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMD---FISTPDGLQLNRYFIQIDDVKVR 116 ++++L+ P + ++ S N D + N I+ Sbjct: 59 DQVAQILKVPAEAIKNFDEDKALNVISNTFNSHDSSTMNAVNVNPTFNPLDKLIESYDEN 118 Query: 117 QKIIELVRSIVSSEKKYRTIEEECM 141 +K L +++SE++ + + + Sbjct: 119 RK---LYERLLTSEQEKVELLKRLL 140 >gi|256422517|ref|YP_003123170.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256037425|gb|ACU60969.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 97 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+GK I+ R ++Q++L E +GIT + E GV + L+ I+ L S ++F Sbjct: 1 MNIGKAIQTLRTKKNITQKELAEKIGITQTGLSYIETGVKHPSENSLEKIANALGSSVAF 60 Query: 73 F----FDVSPTVCSDISSEENN-VMDFISTPDGL 101 D+ V D +E + DF++T L Sbjct: 61 IKLASLDLDKDVPQDKRAEFDELFPDFVATMQRL 94 >gi|227819601|ref|YP_002823572.1| MerR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227338600|gb|ACP22819.1| putative MerR family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 275 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 35/88 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VG+++R R G + E++ +GI + E+ V + L +++E + + Sbjct: 95 IDLQVGRKLRSLRHAGGKTLEQVAGDVGIAPSVLSTLERTSQGVSVAVLHNLAEYFGTTV 154 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTP 98 S + +TP Sbjct: 155 SSLSGEEEPQSRTLVRAGEWRNWPRTTP 182 >gi|188492926|ref|ZP_03000196.1| conserved hypothetical protein [Escherichia coli 53638] gi|188488125|gb|EDU63228.1| conserved hypothetical protein [Escherichia coli 53638] Length = 110 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 12/86 (13%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGA 56 M IP +R++ R G+SQ LG +G ++ YEKG + Sbjct: 1 MSEKNPIP--------ERLKEARCRAGLSQRSLGLLVGFDPASASSRMNHYEKGRHVPDI 52 Query: 57 SRLQHISEVLESPISFFFDVSPTVCS 82 L+ ++ L P+++FF T Sbjct: 53 DTLRRMAAELNVPLNYFFCDDQTTAE 78 >gi|163854504|ref|YP_001628802.1| putative DNA-binding protein [Bordetella petrii DSM 12804] gi|163258232|emb|CAP40531.1| putative DNA-binding protein [Bordetella petrii] Length = 136 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF 74 G+R+R R+ G +Q++L G+T + YE G ++ L +++ L+ + Sbjct: 11 GQRVRGARLRFGWTQKELASVSGLTQSAIGNYESGQRTEPTSAALIKLAQALDVTPEWLR 70 Query: 75 DVSPTVCSDISSEENNVM 92 + + Sbjct: 71 QGKEAKDGPSKKSLSYMP 88 >gi|53718188|ref|YP_107174.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] gi|167814172|ref|ZP_02445852.1| putative DNA-binding protein [Burkholderia pseudomallei 91] gi|52208602|emb|CAH34538.1| putative DNA-binding protein [Burkholderia pseudomallei K96243] Length = 158 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISE 64 K+ V + +R+R R G+SQ++L + + E+G + S L +++ Sbjct: 3 KLHEAVANGLSERLRTIRKRAGLSQDELAARASLARTNLASVEQGRRANLRLSTLSRLAD 62 Query: 65 VLESPISFFFDVSPTVCSDISSEEN 89 VL + FF P + + E+ Sbjct: 63 VLGVDVLDFFCDRPVGEQEPAGEDA 87 Score = 37.1 bits (84), Expect = 0.74, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 21/61 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R G+SQE L V + E LQ +++ L I + Sbjct: 93 ANVKRLRSEAGLSQEALSVKAHRFRTYVGRLENEAASPMVVDLQDLADALGISIPALLEP 152 Query: 77 S 77 S Sbjct: 153 S 153 >gi|107027495|ref|YP_625006.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693793|ref|YP_839326.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|254249535|ref|ZP_04942855.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] gi|105896869|gb|ABF80033.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia AU 1054] gi|116651793|gb|ABK12433.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia cenocepacia HI2424] gi|124876036|gb|EAY66026.1| Helix-turn-helix protein [Burkholderia cenocepacia PC184] Length = 203 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P I + + + ++ DG R + ID Sbjct: 86 S-QPKAPETIRVDGPHDIPTLAGHDGRYQLRVWGPID 121 >gi|302384944|ref|YP_003820766.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302195572|gb|ADL03143.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 87 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 R++ R LG++QE+LG+ +G + Q + E N I++V + PI F F Sbjct: 3 NRMKELREKLGITQEQLGQLVGASRQAIHALETEKNEPSIWLAYDIAQVFKEPIEHVFLF 62 Query: 75 DVSPTVCSDISS 86 + S S Sbjct: 63 EDSERKSRSDLS 74 >gi|297538223|ref|YP_003673992.1| XRE family transcriptional regulator [Methylotenera sp. 301] gi|297257570|gb|ADI29415.1| transcriptional regulator, XRE family [Methylotenera sp. 301] Length = 184 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 43/111 (38%), Gaps = 4/111 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+++ R+ +SQ L + G+ + E G S L+ I + ++ FF Sbjct: 5 LGARLKIVRLRHQLSQRALAKKAGVANATISLIESGNTSPSVSALKRILAGIPMTLAEFF 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 ++ SE + ++ G + + QI K + L + Sbjct: 65 SDE---LPNMQSEVFYRAESLTEISGGEGI-SYRQIGSAKAGHMLQILYET 111 >gi|296104296|ref|YP_003614442.1| hypothetical protein ECL_03959 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058755|gb|ADF63493.1| hypothetical protein ECL_03959 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 190 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 28/80 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R+ +S +L + G++ + E G + L I+ L + Sbjct: 17 IGNNVKKLRIARNLSLNELAKLSGVSKATLSTLESGGSNPRVDTLDSIASALRLTLGDLL 76 Query: 75 DVSPTVCSDISSEENNVMDF 94 + I + D+ Sbjct: 77 GNNNERYPYIEKNSDYKGDY 96 >gi|293401672|ref|ZP_06645814.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304930|gb|EFE46177.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 69 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 KR+R R +SQ +L + L I+ + YE G V L +++ + I + D Sbjct: 6 KRLRDLREDHDLSQAELAKFLNISQRTYSYYETGERSVPVEILAKLAKFYNTTIEYLID 64 >gi|290956608|ref|YP_003487790.1| UDP-N-acetylglucosamine transferase [Streptomyces scabiei 87.22] gi|260646134|emb|CBG69227.1| putative UDP-N-acetylglucosamine transferase [Streptomyces scabiei 87.22] Length = 509 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +GK IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MADDYLERIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|257415438|ref|ZP_05592432.1| predicted protein [Enterococcus faecalis AR01/DG] gi|257157266|gb|EEU87226.1| predicted protein [Enterococcus faecalis ARO1/DG] Length = 250 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 3/104 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R + L +G++ + +E G+N L+ I++ ++ Sbjct: 24 KQVGARMREARKKKKYTLRYLANKIGLSSGSTISNWELGLNLPNKRYLKKIAKACDTTGD 83 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + +EN + P + +++ + ++ Sbjct: 84 WLLYGDFDRFVRQLLKENFQNKQLLKPP--FFTQLMVRLSEEQL 125 >gi|256847858|ref|ZP_05553303.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] gi|256715547|gb|EEU30523.1| conserved hypothetical protein [Lactobacillus coleohominis 101-4-CHN] Length = 189 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 39/93 (41%), Gaps = 1/93 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R+ G+SQE+L E ++ + +Q+ E G + L ++ L + F+ Sbjct: 26 QIKELRVAKGLSQEQLAEAAKVSVRTIQRLEAGQDG-SIETLNLVAGALGVSVRDLFEDP 84 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + ++ + + Q + F ++ Sbjct: 85 QAQANQERISRSDSQLQVQLTNRWQEFKTFKRL 117 >gi|238921821|ref|YP_002935335.1| hypothetical protein EUBELI_20054 [Eubacterium eligens ATCC 27750] gi|238873493|gb|ACR73201.1| Hypothetical protein EUBELI_20054 [Eubacterium eligens ATCC 27750] Length = 154 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 40/105 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R M+ ++L GI ++KYE +L+ I+ L+ + F D+ Sbjct: 18 IRKYREARKMTMKQLSIKSGIKLSTIKKYETDNRNPKLEQLEKIAAALDVSVFEFLDIEV 77 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 SDI S N + + + + I + + + + Sbjct: 78 KSISDIISLVNKMNNATEIEWDIDNEKVSISFKNEDINNSLKDYA 122 >gi|228961894|ref|ZP_04123446.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797785|gb|EEM44846.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pakistani str. T13001] Length = 165 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 9/134 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLG------ITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G R++ R+ G S ++LGE + + V +E + + L + LE Sbjct: 5 GARVKTLRLDRGWSMKQLGEEISKLSGSPLPQTTVSNWENKGSEPPYNILVLTATALEVS 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + + + ++ V PD + ++ I EL + + Sbjct: 65 TDYLLGKTDELQFEQHILKDAVPTP---PDYTEDVANINNNSTASLQNLIQELKHELNNL 121 Query: 130 EKKYRTIEEECMVE 143 + E + E Sbjct: 122 PINKKESIENDLNE 135 >gi|218133855|ref|ZP_03462659.1| hypothetical protein BACPEC_01744 [Bacteroides pectinophilus ATCC 43243] gi|319936993|ref|ZP_08011403.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|217991230|gb|EEC57236.1| hypothetical protein BACPEC_01744 [Bacteroides pectinophilus ATCC 43243] gi|319807929|gb|EFW04508.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 111 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 15/118 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK IR R+ + QE L E +T + E+G I L Sbjct: 6 IGKNIRKFRLARKLRQEDLAEKTDLTTNYIGMVERGEKIPSLETFIKIVNALGVSSDMVL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + LN ++ + R +I E++ ++V K+ Sbjct: 66 TDVLETGYTVKNS--------------MLNEKLEKLA-PEDRNRIYEVIDTLVKQSKQ 108 >gi|171778687|ref|ZP_02919783.1| hypothetical protein STRINF_00635 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282644|gb|EDT48068.1| hypothetical protein STRINF_00635 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 65 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R LG+SQ L + +GI Q V E ++E L + ++ F Sbjct: 2 NRVKEFRTNLGISQLTLAKQIGIARQTVNLIENNKYNPSLDLCIKLAEALGTDLNTLF 59 >gi|166363190|ref|YP_001655463.1| hypothetical protein MAE_04490 [Microcystis aeruginosa NIES-843] gi|166085563|dbj|BAG00271.1| hypothetical protein MAE_04490 [Microcystis aeruginosa NIES-843] Length = 82 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 32/81 (39%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +K + +G IR R LG+SQE+LG + + E+GV + L +++ Sbjct: 2 EKSKAVILRALGLMIREHRAALGISQEELGLRCHLDRTYISGLERGVRNPSLTALVTLAK 61 Query: 65 VLESPISFFFDVSPTVCSDIS 85 L +S + Sbjct: 62 GLNITVSQLLENLEIEIEKPE 82 >gi|163869144|ref|YP_001610383.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018830|emb|CAK02388.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 156 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 54/113 (47%), Positives = 70/113 (61%), Gaps = 5/113 (4%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ VGKRIRLRR L MSQ LG LGI+FQQVQKYEKG+NRV A RL IS++L PI Sbjct: 43 IDLLVGKRIRLRRKRLKMSQTTLGNALGISFQQVQKYEKGLNRVSAGRLMEISDILNVPI 102 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 SFF+ T +SS + IS + L + F + VK R+ ++L+ Sbjct: 103 SFFYADIITKQHALSS----HDEIISNTEEYLLLKRFRTLTTVK-RKAFLQLI 150 >gi|160947469|ref|ZP_02094636.1| hypothetical protein PEPMIC_01403 [Parvimonas micra ATCC 33270] gi|158446603|gb|EDP23598.1| hypothetical protein PEPMIC_01403 [Parvimonas micra ATCC 33270] Length = 200 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + V +R++ R I +Q++ E LGI + YE G N L I++ + + Sbjct: 3 NKTVSERLKYLRSINKKTQKEFAEFLGIPQPSMSAYENGKNNPTIDVLIDIADKCKVSLD 62 Query: 72 FFFDVSP 78 + S Sbjct: 63 WLAGRSD 69 >gi|91224506|ref|ZP_01259768.1| transcriptional regulator, putative [Vibrio alginolyticus 12G01] gi|91190848|gb|EAS77115.1| transcriptional regulator, putative [Vibrio alginolyticus 12G01] Length = 113 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R +SQ+ LG +G+ + +YE+ + L+ I++ L P+++ Sbjct: 9 ARLKHARKQANLSQKALGIRIGMDDSSASARMNQYERERHTPDVKTLKLIADELNVPLNY 68 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF ++ D Sbjct: 69 FFCEDEITAELAANLHKLSND 89 >gi|152977389|ref|YP_001376906.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026141|gb|ABS23911.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 65 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 20/60 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R ++Q ++ L +T Q + E I+ + F + Sbjct: 5 NRIKELRKENHITQVEMARALQVTRQTIVAVENHHYNPSLELSLKIARYFGMKVEEIFTL 64 >gi|333025545|ref|ZP_08453609.1| putative transcriptional regulator [Streptomyces sp. Tu6071] gi|332745397|gb|EGJ75838.1| putative transcriptional regulator [Streptomyces sp. Tu6071] Length = 209 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 3/81 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + +D V KR+R R+ G S E+L ++ + + E G R+ L Sbjct: 1 MTQDD---DDLDSLVRKRVRALRVAQGWSLEELARRANLSQSTLSRIENGQRRLALDSLV 57 Query: 61 HISEVLESPISFFFDVSPTVC 81 ++ L++ + + + Sbjct: 58 TLARALDTSLDQLVETASDDV 78 >gi|296158468|ref|ZP_06841299.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia sp. Ch1-1] gi|295891412|gb|EFG71199.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia sp. Ch1-1] Length = 327 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 3/124 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ I Sbjct: 29 GEREERDPFLTAMGERVRLLRARRGMTRKTLATETGLSERHLANLESGVGNASVLVLRQI 88 Query: 63 SEVLESPISFFFDVSPTVCSD---ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + L ++ T ++ I + + L F Q R+ Sbjct: 89 AATLNCSLAEVIGDETTASAEWLLIRELLHGRDQAALQRARVALAEMFAQAPRDPHRKDR 148 Query: 120 IELV 123 I L+ Sbjct: 149 IALI 152 >gi|288905859|ref|YP_003431081.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|288732585|emb|CBI14157.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] Length = 136 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 1/115 (0%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + + R I ++QE+L +G++ + + K+E L ++EV + V Sbjct: 9 ENLTWLRKINRLTQEQLALKVGVSRESIAKWETKRVEPAIKNLVKLAEVFNVGVDKLLGV 68 Query: 77 SPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + +++ D + + + + E V + S + Sbjct: 69 KIEDNQTAIGMFELLEEYLDDQCDNISFLESDYRAGYEQALGDVSEFVSDLASED 123 >gi|229069332|ref|ZP_04202622.1| Transcriptional regulator, Xre [Bacillus cereus F65185] gi|229078964|ref|ZP_04211516.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] gi|228704378|gb|EEL56812.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] gi|228713819|gb|EEL65704.1| Transcriptional regulator, Xre [Bacillus cereus F65185] Length = 404 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+I+E LE +SF Sbjct: 4 LGEKIKTLRKEKKLTQTELV-GSELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDEGEIVELIQ 74 >gi|225569157|ref|ZP_03778182.1| hypothetical protein CLOHYLEM_05237 [Clostridium hylemonae DSM 15053] gi|225571912|ref|ZP_03780782.1| hypothetical protein CLOHYLEM_07886 [Clostridium hylemonae DSM 15053] gi|225159432|gb|EEG72051.1| hypothetical protein CLOHYLEM_07886 [Clostridium hylemonae DSM 15053] gi|225161956|gb|EEG74575.1| hypothetical protein CLOHYLEM_05237 [Clostridium hylemonae DSM 15053] Length = 68 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R +SQE+L +G+T Q + E+ I+ I FD S Sbjct: 4 RIQELRKAHKLSQEELAMAVGVTRQTIISLEREKYTASLVLAYKIARFFGVMIEDVFDFS 63 Query: 78 P 78 Sbjct: 64 D 64 >gi|187940050|gb|ACD39183.1| transcription regulator [Pseudomonas aeruginosa] Length = 75 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G+RIR++R + +SQ+ L + V + E+G + +L I+ L Sbjct: 2 DKLAKALGERIRMQRKVCRISQDALALACSLDRSYVGRIERGEVNITVEKLYRIAGELAC 61 Query: 69 PISFFF 74 S Sbjct: 62 DPSSLL 67 >gi|153939134|ref|YP_001389968.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|152935030|gb|ABS40528.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|295318053|gb|ADF98430.1| DNA-binding protein [Clostridium botulinum F str. 230613] Length = 130 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 1/94 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FD 75 ++ R G+SQ++LG L ++ Q + K+E G +L + + E + D Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLTALGDFFEISLDELVMD 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 V N + I + + + + Sbjct: 65 VKAKESIKTEPLVMNRFETIIDSIDRENVKMYTK 98 >gi|27802476|gb|AAO21114.1| unknown [Rhizobium leguminosarum bv. viciae] Length = 72 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG R G++QE++ G + Q + E+G L +++ L+ Sbjct: 7 VGSNFARLRREKGLTQEEVEARSGFSQQYLSSLERGRRNPTVITLYELAQALDVS 61 >gi|78064026|ref|YP_373934.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77971911|gb|ABB13290.1| transcriptional regulator, XRE family with cupin sensor [Burkholderia sp. 383] Length = 203 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P I + + + ++ DG R + ID Sbjct: 86 S-QPKAAETIRVDGPHDIPTLAGHDGRYQLRVWGPID 121 >gi|167036905|ref|YP_001664483.1| XRE family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039610|ref|YP_001662595.1| helix-turn-helix domain-containing protein [Thermoanaerobacter sp. X514] gi|256751511|ref|ZP_05492388.1| transcriptional regulator, XRE family [Thermoanaerobacter ethanolicus CCSD1] gi|300915140|ref|ZP_07132455.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X561] gi|307267180|ref|ZP_07548687.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|307725064|ref|YP_003904815.1| helix-turn-helix domain-containing protein [Thermoanaerobacter sp. X513] gi|320115324|ref|YP_004185483.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166853850|gb|ABY92259.1| helix-turn-helix domain protein [Thermoanaerobacter sp. X514] gi|166855739|gb|ABY94147.1| transcriptional regulator, XRE family [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749595|gb|EEU62622.1| transcriptional regulator, XRE family [Thermoanaerobacter ethanolicus CCSD1] gi|300888864|gb|EFK84011.1| transcriptional regulator, XRE family [Thermoanaerobacter sp. X561] gi|306917796|gb|EFN48063.1| transcriptional regulator, XRE family [Thermoanaerobacter wiegelii Rt8.B1] gi|307582125|gb|ADN55524.1| helix-turn-helix domain protein [Thermoanaerobacter sp. X513] gi|319928415|gb|ADV79100.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 132 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 2/105 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R ++ L + G++ + E + ++ L + L I + Sbjct: 4 VGERIKYARKKNNLTITALSKLTGLSVGNLSDLENNKSMPSSNALIKLKNALNVSIDWLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN--RYFIQIDDVKVRQ 117 E+ + + + F + + + R Sbjct: 64 TGQQIEYVKEEEEKYLSREEFESISEKDKIIFKAFETLPEERKRD 108 >gi|324329079|gb|ADY24339.1| transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 300 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R G S+++L E + + + EKG+ LQ+I L PI + Sbjct: 4 IGEKIQFFRKKSGYSRQQLAEDI-CDTSTLYRIEKGLQSPRLDILQNICTKLNIPIDYII 62 Query: 75 DVSPTVC 81 Sbjct: 63 SYEDENT 69 >gi|315036034|gb|EFT47966.1| helix-turn-helix protein [Enterococcus faecalis TX0027] Length = 117 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 1/106 (0%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D G I+ R+ G+++E++G + I + + E L + Sbjct: 2 RKKEDKYDFRAFGLAIKEARLKRGLTREQVGALIEIDPRYLTNIENKGQHPSIQVLYDLV 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +L + FF + + + T L L Sbjct: 62 SLLHVSVDEFFFPANNLVKSTRRLQIEKYMDSFTDKELSLMESLAS 107 >gi|313884124|ref|ZP_07817890.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|312620571|gb|EFR31994.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] Length = 138 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 43/92 (46%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D ++G+ I RR LGM+Q L +G+T + V K+E+ ++ S + +++E L+ + Sbjct: 3 DDSLGRLIANRRKELGMTQLDLARRMGVTDKAVSKWERDLSFPDLSSIPNLAETLDYSLV 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 V E ++ I T L L Sbjct: 63 DLMQVKEKTGKPQKVAEKPIITLILTVVPLAL 94 >gi|291549697|emb|CBL25959.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 127 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 52/138 (37%), Gaps = 11/138 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK+ + +RI ++Q +L GI + ++K A L Sbjct: 1 MQVEKKM------IISERIFYVMEQKNITQLELSRRTGIATSNISDWKKKKTNPKADCLL 54 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I + LE ++ MD+ T +++ + + D + ++++ Sbjct: 55 SICDALEITPDQLLTGKEIDPEYKDAD----MDYEVTKADIRILKQIHSLGDEQY-KRLM 109 Query: 121 ELVRSIVSSEKKYRTIEE 138 ++++ E+ R +E+ Sbjct: 110 AYMKALQKLEQMERIVED 127 >gi|289661956|ref|ZP_06483537.1| phage-related protei [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 143 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 1/106 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VGKR++ R L ++Q+++ + GI+ +EK N G + L + I + Sbjct: 1 MTVGKRLKEERKRLRLTQQEMADACGISKWAQLYFEKDQNMPGGAYLLA-AHARGVDIVY 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 T + + L DV R Sbjct: 60 VLLEQRTKLDPSEAALVSAFRAAPQEVRAALLANLGSARDVSERAA 105 >gi|257871213|ref|ZP_05650866.1| transcriptional regulator [Enterococcus gallinarum EG2] gi|257805377|gb|EEV34199.1| transcriptional regulator [Enterococcus gallinarum EG2] Length = 67 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 27/66 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R + +SQ L + +G+ Q + E +++VL++ ++ F Sbjct: 2 NRVREFRQKMNLSQNALAKEIGVARQTINLIENNKYNPSLDLCIKLAKVLQTDLNSLFWE 61 Query: 77 SPTVCS 82 + Sbjct: 62 VESDEG 67 >gi|228999804|ref|ZP_04159377.1| hypothetical protein bmyco0003_43570 [Bacillus mycoides Rock3-17] gi|229007358|ref|ZP_04164956.1| hypothetical protein bmyco0002_42380 [Bacillus mycoides Rock1-4] gi|228753889|gb|EEM03329.1| hypothetical protein bmyco0002_42380 [Bacillus mycoides Rock1-4] gi|228759953|gb|EEM08926.1| hypothetical protein bmyco0003_43570 [Bacillus mycoides Rock3-17] Length = 73 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 27/72 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R+R R MSQ LG+ + + Q + E+G I+ V P+ Sbjct: 1 MKLQNRVREFRAKHRMSQGDLGKVIDSSRQTISLIERGDYAPSIVLSLKIAHVFGVPVEE 60 Query: 73 FFDVSPTVCSDI 84 F + D Sbjct: 61 IFTLVEGEKDDE 72 >gi|228950623|ref|ZP_04112758.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229067839|ref|ZP_04201157.1| Transcriptional regulator Xre [Bacillus cereus F65185] gi|229077365|ref|ZP_04210032.1| Transcriptional regulator Xre [Bacillus cereus Rock4-2] gi|229176675|ref|ZP_04304080.1| Transcriptional regulator Xre [Bacillus cereus 172560W] gi|229188360|ref|ZP_04315409.1| Transcriptional regulator Xre [Bacillus cereus ATCC 10876] gi|228595159|gb|EEK52929.1| Transcriptional regulator Xre [Bacillus cereus ATCC 10876] gi|228606842|gb|EEK64258.1| Transcriptional regulator Xre [Bacillus cereus 172560W] gi|228705944|gb|EEL58263.1| Transcriptional regulator Xre [Bacillus cereus Rock4-2] gi|228715323|gb|EEL67181.1| Transcriptional regulator Xre [Bacillus cereus F65185] gi|228809098|gb|EEM55582.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 82 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RIR R + G +QE + LG++ + + E+G + +++ L I Sbjct: 22 GRRIRAFRKLKGYTQEGFAKALGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSIEELM 80 >gi|307154063|ref|YP_003889447.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984291|gb|ADN16172.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 82 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 32/67 (47%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ + N VG+ IR R + ++QE+ +G+ F V ++EKG L+ Sbjct: 1 MMSTHTLINLEQPKVGQLIRALRQEMQLTQEQFAGMVGVVFTTVNRWEKGHANPSPMALK 60 Query: 61 HISEVLE 67 I+ L+ Sbjct: 61 IIAMKLD 67 >gi|188577297|ref|YP_001914226.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521749|gb|ACD59694.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae PXO99A] Length = 461 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 10/134 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R G++Q +L L ++ + + E+ + + Q + L Sbjct: 11 QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRPLTLAIQQRLKATLGD----- 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVRSIVSSE 130 + + D + +D G L ++ +V Q +++L R+ Sbjct: 66 --LDGLLDLDDPAALVEPLDQSLRSLGHTLLPAELRALTGNLPQVAQALLDLHRAHQHLL 123 Query: 131 KKYRTIEEECMVEQ 144 ++ +E + VE Sbjct: 124 ERNAALELQIGVEH 137 >gi|187777665|ref|ZP_02994138.1| hypothetical protein CLOSPO_01257 [Clostridium sporogenes ATCC 15579] gi|187774593|gb|EDU38395.1| hypothetical protein CLOSPO_01257 [Clostridium sporogenes ATCC 15579] Length = 70 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 28/67 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R M+Q +L + + ++ + + EKG I+ + + I + + Sbjct: 3 NKVKELRTASNMTQRQLADLVSVSSRTIISLEKGQYNPSIMLAYKIARLFNTTIEELYCL 62 Query: 77 SPTVCSD 83 + ++ Sbjct: 63 KENLENE 69 >gi|161504999|ref|YP_001572111.1| hypothetical protein SARI_03129 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866346|gb|ABX22969.1| hypothetical protein SARI_03129 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 86 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 4/77 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQ----KYEKGVNRVGASRLQHISEVLESP 69 + KR++ R+ ++QEKLG GI YE G ++ + + VL P Sbjct: 1 MIPKRLKEARLRAKLTQEKLGVLAGIEEATAYSRLSHYENGTHKPTFELVCEFARVLNVP 60 Query: 70 ISFFFDVSPTVCSDISS 86 +F+ V ++ Sbjct: 61 ECYFYTVDDGFADEVLK 77 >gi|149926486|ref|ZP_01914747.1| predicted transcriptional regulator [Limnobacter sp. MED105] gi|149824849|gb|EDM84063.1| predicted transcriptional regulator [Limnobacter sp. MED105] Length = 68 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V G ++R R + G+SQ++L I + + E+G R+ + ++ L Sbjct: 3 DVAKIFGSKVRAARKLRGLSQDELALRAEIDRSYMGRIERGEVRITLEKAYKLAATLGCD 62 Query: 70 ISFFF 74 I Sbjct: 63 IKELL 67 >gi|149924579|ref|ZP_01912935.1| hypothetical protein PPSIR1_32734 [Plesiocystis pacifica SIR-1] gi|149814545|gb|EDM74129.1| hypothetical protein PPSIR1_32734 [Plesiocystis pacifica SIR-1] Length = 159 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPIS 71 + +G+RIR R GM+Q++ GI + + E G G L I+E L +S Sbjct: 51 VALGQRIRSAREQRGMTQKQAALAAGIATDMISRLENGRYQSPGLRTLLRIAEGLGIALS 110 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + E ++ I+ + Sbjct: 111 ELLPDTNLEQRASPVELSHRARLIALAHRAE 141 >gi|90962168|ref|YP_536084.1| Phage immunity repressor [Lactobacillus phage Sal4] gi|90821362|gb|ABE00001.1| Phage immunity repressor [Lactobacillus phage Sal4] Length = 126 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 40/103 (38%), Gaps = 1/103 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK+ ++ R+R R+ ++ +K+ + +GI+ + KYE+ Sbjct: 1 MTTFKKLKYDSNLKPNNRLRQLRLSKDLTLKKVADDIGISENLIGKYEREEREPKLKTWI 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 +++ +S+ + ++ ++++ L Sbjct: 61 KLADYFNVSVSYL-QGLTGFSKGKAPSDDLDINYLHQRINRML 102 >gi|9630498|ref|NP_046933.1| CB [Enterobacteria phage N15] gi|1184742|gb|AAB81655.1| repressor protein [Enterobacteria phage N15] gi|3192717|gb|AAC19070.1| gp38 [Enterobacteria phage N15] gi|89158281|gb|ABD62892.1| cB [Cloning vector pJAZZ-KA] gi|124491097|gb|ABN12903.1| CB [Cloning vector pN15E4] gi|124491104|gb|ABN12909.1| CB [Cloning vector pN15E6] gi|205318621|gb|ACI02337.1| CB [Linear cloning vector pJAZZ-OK] gi|269974867|gb|ACZ55231.1| phage repressor cB [Cloning vector pJAZZ-OCmin] Length = 202 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 34/70 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ RR+ L ++ +++ E +GI+ VQ E+G +++ L P+ + Sbjct: 9 GERLKARRLELKLTLKQVAEAVGISLPGVQNLERGDVMPSLEIGLSLAKCLRKPVQWILY 68 Query: 76 VSPTVCSDIS 85 + + + Sbjct: 69 GTESDPDRVP 78 >gi|52079411|ref|YP_078202.1| hypothetical protein BL02899 [Bacillus licheniformis ATCC 14580] gi|52784771|ref|YP_090600.1| hypothetical protein BLi00999 [Bacillus licheniformis ATCC 14580] gi|319646808|ref|ZP_08001037.1| XRE family Transcriptional regulator [Bacillus sp. BT1B_CT2] gi|52002622|gb|AAU22564.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|52347273|gb|AAU39907.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317391396|gb|EFV72194.1| XRE family Transcriptional regulator [Bacillus sp. BT1B_CT2] Length = 65 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 26/63 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++L R+ ++Q +L E + +T Q + EK I++ L+ + F Sbjct: 3 NRVKLARIEKSLTQAQLAERVNVTRQTIGLIEKNKYNPTLQLCIAIAKALDKTLDDLFWE 62 Query: 77 SPT 79 Sbjct: 63 EKA 65 >gi|88855996|ref|ZP_01130658.1| Transcription regulator [marine actinobacterium PHSC20C1] gi|88814863|gb|EAR24723.1| Transcription regulator [marine actinobacterium PHSC20C1] Length = 193 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 33/81 (40%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ + +G RIR R G + E++ G+T + + E+ + L + +VL Sbjct: 8 PSAEALAIGARIRSARKAQGFTLEQVAVSAGLTKGFLSRLERDETSPSVATLVQLCQVLS 67 Query: 68 SPISFFFDVSPTVCSDISSEE 88 I F V +++ Sbjct: 68 LEIGSLFAEPEAVKISLANAP 88 >gi|83945538|ref|ZP_00957885.1| transcriptional regulator [Oceanicaulis alexandrii HTCC2633] gi|83851114|gb|EAP88972.1| transcriptional regulator [Oceanicaulis alexandrii HTCC2633] Length = 71 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 26/62 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G++Q L +G+T + + E GV A I+ L P+ F +S Sbjct: 10 MKALRAEAGLTQADLAARVGVTRKTINTVENGVFTPSALLALKIARALGQPVEQVFWLSD 69 Query: 79 TV 80 Sbjct: 70 EA 71 >gi|312111605|ref|YP_003989921.1| XRE family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311216706|gb|ADP75310.1| transcriptional regulator, XRE family [Geobacillus sp. Y4.1MC1] Length = 294 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +GKR++ R +S ++L E I + + E+G + +E + Sbjct: 3 ELGKRLKEAREAKNISLDELQEMTKIQKRYLIGIEEGNYAIMPGNFYVRAFIKQYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEE 88 F+ EE Sbjct: 63 LDPEEIFEEYKQDIPQSYQEE 83 >gi|311069063|ref|YP_003973986.1| transcriptional regulator SinR [Bacillus atrophaeus 1942] gi|310869580|gb|ADP33055.1| transcriptional regulator SinR [Bacillus atrophaeus 1942] Length = 111 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 1/77 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R G S +L E G+ + E+ L+ +S VL+ + Sbjct: 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLKKVSAVLDVSVHT 60 Query: 73 FFDVSPTVCSDISSEEN 89 D D + Sbjct: 61 LLDEKHETEYDGQLDSE 77 >gi|296122323|ref|YP_003630101.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] gi|296014663|gb|ADG67902.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] Length = 196 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/112 (12%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + + R+R R G S ++L G++ + + E+ + I++ Sbjct: 13 DAISQMLCHRVRELRQQNGWSLDQLSSASGVSRSMLSQIERNQANPTLAVTARIAQAFGL 72 Query: 69 PISFFFD----------VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 I + + + + + + +P L+ + F Q+ Sbjct: 73 TIGQLVETPHVVPGIHVIRGDDPAHLYRSDEDCEIRTLSPLPLEKDVEFYQL 124 >gi|291286694|ref|YP_003503510.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] gi|290883854|gb|ADD67554.1| transcriptional regulator, XRE family [Denitrovibrio acetiphilus DSM 12809] Length = 105 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR R SQE L E I+ + + + E+G + V A+ L I+ L PI+ Sbjct: 6 VKLGRRIREVRRSKNFSQETLAEKANISSKYLGEVERGESNVSAALLNDIASALNIPIAE 65 Query: 73 FFD 75 D Sbjct: 66 LMD 68 >gi|227892644|ref|ZP_04010449.1| XRE family transcriptional regulator [Lactobacillus ultunensis DSM 16047] gi|227865515|gb|EEJ72936.1| XRE family transcriptional regulator [Lactobacillus ultunensis DSM 16047] Length = 275 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 50/116 (43%), Gaps = 7/116 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +KK + +G+ ++ R+ G++QE++ + I+ K E+ V+++ A+ L Sbjct: 1 MEDKK------VTIGEALKQVRLHEGLTQEQMAAGI-ISESFYSKVERDVHQIDANLLLD 53 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 I + FF + + + + + L++ +++K R+ Sbjct: 54 ILVAHHIDVGSFFSKISNQKTKQEPDFDLMNQISFAQNKRDLHKLDEITEEIKNRK 109 >gi|225376748|ref|ZP_03753969.1| hypothetical protein ROSEINA2194_02390 [Roseburia inulinivorans DSM 16841] gi|225211374|gb|EEG93728.1| hypothetical protein ROSEINA2194_02390 [Roseburia inulinivorans DSM 16841] gi|291524817|emb|CBK90404.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] gi|291528861|emb|CBK94447.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] gi|291539146|emb|CBL12257.1| Predicted transcriptional regulators [Roseburia intestinalis XB6B4] Length = 67 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R+ + +SQE+L + +T + E G I +VL ++ F Sbjct: 5 RLKLARVEMNLSQEELAAKVNVTRPTINLLEGGKFNPSLQLCIRICKVLNKTLNDLFWEE 64 Query: 78 PT 79 Sbjct: 65 DN 66 >gi|254505711|ref|ZP_05117857.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus 16] gi|219551364|gb|EED28343.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus 16] Length = 207 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGEKIKDIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLAMGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|219852085|ref|YP_002466517.1| XRE family transcriptional regulator [Methanosphaerula palustris E1-9c] gi|219546344|gb|ACL16794.1| transcriptional regulator, XRE family [Methanosphaerula palustris E1-9c] Length = 69 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI++ R + ++QE LG +G+ Q + EKG I+ I F Sbjct: 3 NRIKVFRAMNDLTQENLGRAIGVNRQTILAIEKGQYVPSLDLAFRIARYFSVNIEEMF 60 >gi|187479415|ref|YP_787440.1| transcriptional regulator [Bordetella avium 197N] gi|115424002|emb|CAJ50555.1| putative transcriptional regulator [Bordetella avium 197N] Length = 111 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 12/107 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFFDV 76 R+R R G +Q++L E G+T + YE G + AS + ++EVL + Sbjct: 7 RLRTARNTRGWTQKELAELSGLTPSAIGNYESGQRAQASASAMLKLAEVLGVSPGWLAQG 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + + ++Q+ + R+++ L+ Sbjct: 67 DSPAPPPPAPWPFPSVPY----------SRYLQLK-PQQRRQLEALI 102 >gi|47564475|ref|ZP_00235520.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|47558627|gb|EAL16950.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 67 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L M+QE L + +G+ + + EKG I++ L S I F Sbjct: 6 KIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAYDIAKALHSTIDGIFIFE 65 Query: 78 PT 79 Sbjct: 66 DE 67 >gi|319782361|ref|YP_004141837.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168249|gb|ADV11787.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 230 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R ++ +LG+ +G T + + E+G++ S L I+ L ++ F Sbjct: 25 LGDRIKAYRTTRRLTLRQLGDMIGTTASFLSQLERGLSGANTSTLMLIANALGISLADLF 84 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D + + S L Sbjct: 85 DECEVSPHAVLTRSERPALPTSEGYRKTLL 114 >gi|297158608|gb|ADI08320.1| transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 206 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 2 VGNKKIPNPV----DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 +K +P P + +VG+R+ R + MS L E ++ + + E+G + S Sbjct: 9 TESKSVPEPPAERPESDVGRRVHAFRRLRRMSLRALAERSDVSGSFLSQLERGRSSASIS 68 Query: 58 RLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 L I+ L ++ FD S + + +++ V+D++ L R Sbjct: 69 TLARIASALGITMAELFDTSAIGPTPLRAQDRPVLDWVGGGRKTSLTRE 117 >gi|291556800|emb|CBL33917.1| Predicted transcriptional regulators [Eubacterium siraeum V10Sc8a] Length = 131 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 49/113 (43%), Gaps = 3/113 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFFFDV 76 +++ R G++Q++ + LG++ + + YEKG + + ++E+L I++ Sbjct: 6 KVKKERRAKGLTQQQFADMLGVSLRTITNYEKGESYPKQREIYGKMAEILGVDINYLLTE 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + + + + ++ F + + + E++++I + Sbjct: 66 NEEFYINANEKYGATGAQQAKALMQEVTGLFAGGELDQ--DDMDEMMKAIQDA 116 >gi|229095345|ref|ZP_04226337.1| Transcriptional regulator [Bacillus cereus Rock3-29] gi|229101455|ref|ZP_04232196.1| Transcriptional regulator [Bacillus cereus Rock3-28] gi|229114294|ref|ZP_04243715.1| Transcriptional regulator [Bacillus cereus Rock1-3] gi|228669314|gb|EEL24735.1| Transcriptional regulator [Bacillus cereus Rock1-3] gi|228681943|gb|EEL36079.1| Transcriptional regulator [Bacillus cereus Rock3-28] gi|228688204|gb|EEL42090.1| Transcriptional regulator [Bacillus cereus Rock3-29] Length = 66 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R+ L ++Q+KL E +G+T Q + EKG I ++ ++ F Sbjct: 4 SKIKVARVQLDLTQQKLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLFWE 63 Query: 77 SPT 79 Sbjct: 64 EEE 66 >gi|262199526|ref|YP_003270735.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262082873|gb|ACY18842.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 123 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+RL R LGM Q +L G++ + Q+ E G L IS+ L+ +SFF Sbjct: 9 ALGQRLRLVREGLGMGQGELASACGVSDARYQEIEAGSYLPSIDELIAISDALDIDVSFF 68 Query: 74 FDV 76 + Sbjct: 69 CED 71 >gi|260587016|ref|ZP_05852929.1| transcriptional regulator, Cro/CI family [Blautia hansenii DSM 20583] gi|260542638|gb|EEX23207.1| transcriptional regulator, Cro/CI family [Blautia hansenii DSM 20583] Length = 120 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R G+SQ++LG LG++ Q + K+E + RL +S+ + Sbjct: 5 EKLIELRKSKGLSQDELGNALGVSRQTISKWELAQSYPDFQRLVLLSDYFGLSLDALVKD 64 Query: 77 SP 78 Sbjct: 65 ID 66 >gi|226325896|ref|ZP_03801414.1| hypothetical protein COPCOM_03709 [Coprococcus comes ATCC 27758] gi|225206020|gb|EEG88374.1| hypothetical protein COPCOM_03709 [Coprococcus comes ATCC 27758] gi|291546627|emb|CBL19735.1| Predicted transcriptional regulators [Ruminococcus sp. SR1/5] Length = 129 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 26/63 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R G+S E+L E ++ + E + L IS LE I Sbjct: 8 IGKRIRETRKQRGLSAEELAEIADLSTVYISYIENAKRKPSLESLIKISNALEITIDELL 67 Query: 75 DVS 77 + Sbjct: 68 YGN 70 >gi|156977428|ref|YP_001448334.1| hypothetical protein VIBHAR_06215 [Vibrio harveyi ATCC BAA-1116] gi|156529022|gb|ABU74107.1| hypothetical protein VIBHAR_06215 [Vibrio harveyi ATCC BAA-1116] Length = 68 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 26/66 (39%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + G +RL R +SQ+KL I + + E+G + + ++ VL Sbjct: 2 NDLAKAFGNNLRLMRKSKSISQDKLALLADIDRSYIGRIERGEVNITLEKAYQLARVLGC 61 Query: 69 PISFFF 74 + Sbjct: 62 DVIDLL 67 >gi|153952986|ref|YP_001393751.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219853643|ref|YP_002470765.1| hypothetical protein CKR_0300 [Clostridium kluyveri NBRC 12016] gi|146345867|gb|EDK32403.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219567367|dbj|BAH05351.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 368 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I R ++QE+LG+ +G++ V K+E G + + L ++ I Sbjct: 4 LQIGEVILKLRKKREITQEQLGKFIGVSTAAVSKWEVGNSYPDITLLPVLASFFNISIDE 63 Query: 73 FF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 ++S +I E + + G+ + + Sbjct: 64 LLNYKIELSEKEVMEIFRECEAMFAGENIEKGIDTAKKY 102 >gi|15900920|ref|NP_345524.1| transcriptional regulator, putative [Streptococcus pneumoniae TIGR4] gi|111657887|ref|ZP_01408599.1| hypothetical protein SpneT_02000929 [Streptococcus pneumoniae TIGR4] gi|149242896|pdb|2P5T|A Chain A, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|149242898|pdb|2P5T|C Chain C, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|149242900|pdb|2P5T|E Chain E, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|149242902|pdb|2P5T|G Chain G, Molecular And Structural Characterization Of The Pezat Chromosomal Toxin-Antitoxin System Of The Human Pathogen Streptococcus Pneumoniae gi|14972524|gb|AAK75164.1| putative transcriptional regulator [Streptococcus pneumoniae TIGR4] Length = 158 Score = 43.3 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|329313504|gb|AEB87917.1| hypothetical protein SAT0131_00856 [Staphylococcus aureus subsp. aureus T0131] Length = 267 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 14/140 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECL--------GITFQQVQKYEKGVNRVGASRLQHISEVL 66 +G RI+ R+ G++ + GE + I+ V ++EKGV+ A RL+ I+E Sbjct: 7 IGLRIKSIRLAKGLNLREFGEEISKLTKEKKYISDSIVSRWEKGVSIPNAKRLKAIAEYG 66 Query: 67 ESPISFFFDVSPTVCSDISSEEN--NVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 I+F + DI N+ + I + Y + K+ L+ Sbjct: 67 NVSINFLLYGNEISYEDIYQNIKSVNMKNNIQDKLIDFIVNYMPSSEQNTYYFKVASLIT 126 Query: 125 SIVSSEKKYRTIEEECMVEQ 144 I +C++EQ Sbjct: 127 IINDHTDSNI----DCIIEQ 142 >gi|320093943|ref|ZP_08025774.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319979126|gb|EFW10638.1| XRE family transcriptional regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 76 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D V RI + R +S+ +L E LG+ +Q V E+G I+ E P+ Sbjct: 5 DDVVHNRIAVLRADRRVSRRELAEALGVHYQTVGYLERGEYAPSLHLALRIARYFEVPVE 64 Query: 72 FFFDVSP 78 F + Sbjct: 65 SVFSLEE 71 >gi|317488433|ref|ZP_07946986.1| hypothetical protein HMPREF1023_00684 [Eggerthella sp. 1_3_56FAA] gi|325832081|ref|ZP_08165178.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|316912477|gb|EFV34033.1| hypothetical protein HMPREF1023_00684 [Eggerthella sp. 1_3_56FAA] gi|325486402|gb|EGC88854.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 254 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R +SQ +L LG++ Q V K+E + +L + ++ E + Sbjct: 6 NLQHLRGTRDLSQAQLATLLGVSRQSVAKWEAEKSYPEMDKLIKLCDLFECSLDDLVRGD 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 T C +SE + S + + Y D +R++ ++ S+ Sbjct: 66 LTGC-ATASEAIVEAEPASAAMPVDKDGY-----DEHMRRRAWDVAASVA 109 >gi|225869044|ref|YP_002744992.1| DNA-binding protein [Streptococcus equi subsp. zooepidemicus] gi|225702320|emb|CAX00123.1| DNA-binding protein [Streptococcus equi subsp. zooepidemicus] Length = 297 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEK-LGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + I +GKRIR R+ G +Q + +T +Q+ + E G + ++ +SE L Sbjct: 3 DIKIEIGKRIRTVRLDKGFTQIDICDDESELTIRQLARIENGQAMITLPKIIFLSEKLGI 62 Query: 69 PISFFFDVSPT 79 P+ D Sbjct: 63 PVQDLIDEKIE 73 >gi|199599682|ref|ZP_03213053.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|258507137|ref|YP_003169888.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|199589426|gb|EDY97561.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|257147064|emb|CAR86037.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG] gi|259648507|dbj|BAI40669.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 291 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 25/73 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R M+Q L + L ++ V +E N + I+ + + Sbjct: 94 KQLQQIRTAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARIFSVSLDTLILD 153 Query: 77 SPTVCSDISSEEN 89 + + + Sbjct: 154 DSELNEKLIKDSK 166 >gi|187932496|ref|YP_001886375.1| hypothetical protein CLL_A2186 [Clostridium botulinum B str. Eklund 17B] gi|187720649|gb|ACD21870.1| conserved domain protein [Clostridium botulinum B str. Eklund 17B] Length = 78 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 27/73 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++QE+LG+ +G + Q + E IS+V I F Sbjct: 3 NRLKEFREANKLTQEQLGKLVGTSRQAINAIETEKYEPSIWLAYDISKVFNCSIEEVFIF 62 Query: 77 SPTVCSDISSEEN 89 + + + Sbjct: 63 EESKRKSRADQSR 75 >gi|182684266|ref|YP_001836013.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|221232045|ref|YP_002511197.1| epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] gi|182629600|gb|ACB90548.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|220674505|emb|CAR69066.1| putative epsilon antitoxin [Streptococcus pneumoniae ATCC 700669] Length = 158 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHDLTQLEFARIVGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|270307913|ref|YP_003329971.1| DNA-binding protein [Dehalococcoides sp. VS] gi|270153805|gb|ACZ61643.1| DNA-binding protein [Dehalococcoides sp. VS] Length = 67 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R ++Q +L E +G++ Q + EKG +++ L + I F Sbjct: 6 RIKELRSRYNLTQAELAETVGVSRQTMLYLEKGTYNPSLILAHKVAKALHADIDDVF 62 >gi|41407155|ref|NP_959991.1| hypothetical protein MAP1057c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395506|gb|AAS03374.1| hypothetical protein MAP_1057c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 178 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 24/68 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E L G+T + K E+G + + ++ L+ + F Sbjct: 5 LRPVRRQRGLTLEALAAQTGLTKSYLSKIERGQSTPSIAVALKVARALDVDVGRLFSDET 64 Query: 79 TVCSDISS 86 Sbjct: 65 AREKIAVE 72 >gi|330950550|gb|EGH50810.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae Cit 7] Length = 149 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 7/96 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R+ L +SQ LG G+ YE GV A L IS +++ Sbjct: 4 IGPRLKKERLRLKLSQSALGAIGGVETNAQGNYENGVRSPRADYLSSISN-AGVDVAYVV 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + + ++ +P LNR ++ Sbjct: 63 TGLSATHNVPTVITSD------SPSCAPLNRVVERL 92 >gi|331702631|ref|YP_004399590.1| helix-turn-helix domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329129974|gb|AEB74527.1| helix-turn-helix domain protein [Lactobacillus buchneri NRRL B-30929] Length = 64 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+G ++ R +SQE + LG++ Q + ++E + L ++++ + I+ Sbjct: 2 INLGNNLKEFRQYNELSQEIIACRLGVSRQAISQWEHNLTYPDIENLVRLTQIFDCDINE 61 Query: 73 FF 74 Sbjct: 62 LL 63 >gi|329891038|ref|ZP_08269381.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] gi|328846339|gb|EGF95903.1| helix-turn-helix family protein [Brevundimonas diminuta ATCC 11568] Length = 72 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 6 KIPNPVDINVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K P P+ RIR R G M+Q L +G+T Q + E+G I++ Sbjct: 3 KAPPPIR----NRIRELRFHAGEMTQADLAARIGMTRQTIVAMEQGKYSPSLEAAFRIAQ 58 Query: 65 VLESPISFFFDVSP 78 V I F Sbjct: 59 VFGVEIGEVFQWEG 72 >gi|293401763|ref|ZP_06645904.1| putative transcriptional regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304715|gb|EFE45963.1| putative transcriptional regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 108 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 3/96 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I+ I M+Q++L + L ++ Q + +G + I+E+L F Sbjct: 6 GEIIKEALAINNMTQKQLAKKLHLSPQTINSLLQGRTSIRLDDFFMIAEILHLDPGKIFT 65 Query: 76 VSPTVCSDI---SSEENNVMDFISTPDGLQLNRYFI 108 I S + +D L L RYF Sbjct: 66 TDNEDAKAIDAYLSAAIHKLDDYQRELILALLRYFH 101 >gi|268610362|ref|ZP_06144089.1| SOS-response transcriptional repressor [Ruminococcus flavefaciens FD-1] Length = 217 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 1/72 (1%) Query: 16 GKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+R+ R GM+Q++L + + K E G S + I++ L++ ++ Sbjct: 4 GERVLALRTEKGMTQDELALAVGYKSRSTIAKIESGERDPHQSMIAAIAKALDTTPAYLM 63 Query: 75 DVSPTVCSDISS 86 + S Sbjct: 64 GWEESEQSPDKD 75 >gi|257869747|ref|ZP_05649400.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|257803911|gb|EEV32733.1| conserved hypothetical protein [Enterococcus gallinarum EG2] Length = 211 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL + Sbjct: 10 FLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPNEL 69 Query: 74 FDVS 77 Sbjct: 70 LSGE 73 >gi|163813931|ref|ZP_02205325.1| hypothetical protein COPEUT_00084 [Coprococcus eutactus ATCC 27759] gi|158450801|gb|EDP27796.1| hypothetical protein COPEUT_00084 [Coprococcus eutactus ATCC 27759] Length = 102 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 16 GKRIRLRRMILGMSQEKLGE-CLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RI+ R G++ + L + K+++G + ++ + I Sbjct: 15 GRRIKEVREKKGITVKTLQMFLGFNEPVSIYKWQRGECLPTFDNMYAMACLFGVGIDDLL 74 >gi|152988136|ref|YP_001347819.1| hypothetical protein PSPA7_2452 [Pseudomonas aeruginosa PA7] gi|150963294|gb|ABR85319.1| hypothetical protein PSPA7_2452 [Pseudomonas aeruginosa PA7] Length = 126 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 47/111 (42%), Gaps = 6/111 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGASRLQHISEVLESP 69 +G R++ R+ G SQ++LG +G+ ++ +YE+ + Q ++ VL+ P Sbjct: 13 MLGTRLKAARIRAGYSQKQLGMLVGMDEFSASARMNQYERERHSPNMRTSQQLAMVLQVP 72 Query: 70 ISFFFDVSPTVCSDISSEENNVMDF--ISTPDGLQLNRYFIQIDDVKVRQK 118 +++ + + I + +F T QL + VR + Sbjct: 73 MAYLYCPEDELAELILKVSSLTPEFKKELTRFIEQLLAAQGALGRQPVRTR 123 >gi|149021903|ref|ZP_01835890.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP23-BS72] gi|147929941|gb|EDK80929.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP23-BS72] Length = 287 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 2/97 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + S++S+ + + + + Y +I+ Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNY-ENLEYIYRIE 98 >gi|125624656|ref|YP_001033139.1| HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|124493464|emb|CAL98438.1| HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris MG1363] gi|300071447|gb|ADJ60847.1| HTH-type transcriptional regulator [Lactococcus lactis subsp. cremoris NZ9000] Length = 85 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 IR R+ +G++Q +L E L + Q V +EKG L+ ++ + + Sbjct: 28 NIRNERLAIGLTQNQLAEQLQFSKQAVYNWEKGKCEPNIETLKALATLFNISVDKL 83 >gi|150019804|ref|YP_001312058.1| helix-turn-helix domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149906269|gb|ABR37102.1| helix-turn-helix domain protein [Clostridium beijerinckii NCIMB 8052] Length = 247 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I+ R+ G++Q++ + LGI + YE L I++ L PI D Sbjct: 4 GNNIKKCRLDKGINQKEFAKILGIPVSTLANYENNHREPKTEILIKIADALLIPIDELLD 63 Query: 76 VSPTVCSDIS 85 T S Sbjct: 64 SETTSFSSNL 73 >gi|317403875|gb|EFV84348.1| XRE family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 201 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 1/93 (1%) Query: 2 VGNKKIPN-PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + N P +D + R++ R+ G S ++L G++ + + E AS L Sbjct: 12 MENSFAPEADLDQRLADRLKTLRVERGWSLDELAGRAGVSRATLSRLENAEVSPTASVLG 71 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 + +S + + + + Sbjct: 72 KLCGAYGMTMSRLMRMVEDDFTPLVPSAAQALW 104 >gi|315924082|ref|ZP_07920308.1| XRE family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] gi|315622484|gb|EFV02439.1| XRE family transcriptional regulator [Pseudoramibacter alactolyticus ATCC 23263] Length = 67 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +SQ++L + +G++ Q + EKG I L + F S Sbjct: 5 RMKAARAARDLSQQQLADLVGVSRQTISAVEKGNYNPTIKLCVAICRALGKTLDELFWES 64 Query: 78 PTV 80 Sbjct: 65 AED 67 >gi|302530030|ref|ZP_07282372.1| predicted protein [Streptomyces sp. AA4] gi|302438925|gb|EFL10741.1| predicted protein [Streptomyces sp. AA4] Length = 180 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 2/88 (2%) Query: 2 VGNKKIPN--PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 + P+ + VG RIR R G+ L G+ + + E G L Sbjct: 1 MSTSPAPDGRALAAVVGTRIRTLRTRAGVGLTTLAADSGLGKGTLSELENGRRNPTLDTL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSE 87 I+ L P+S V Sbjct: 61 FAIATALSIPLSDLLFGDDGVAEAHGDS 88 >gi|229146819|ref|ZP_04275184.1| hypothetical protein bcere0012_39590 [Bacillus cereus BDRD-ST24] gi|296504729|ref|YP_003666429.1| transcriptional activator PlcR [Bacillus thuringiensis BMB171] gi|228636647|gb|EEK93112.1| hypothetical protein bcere0012_39590 [Bacillus cereus BDRD-ST24] gi|296325781|gb|ADH08709.1| transcriptional activator plcR [Bacillus thuringiensis BMB171] Length = 289 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IR R I G+SQ +LG+ +G + + E G+ L I+ LE P+ + + Sbjct: 7 GKAIRRIRKIRGLSQSELGDGIG-GQSFISRIEHGLVLPSIDTLLIIANRLEVPLEYLLE 65 >gi|160935693|ref|ZP_02083068.1| hypothetical protein CLOBOL_00583 [Clostridium bolteae ATCC BAA-613] gi|158441437|gb|EDP19147.1| hypothetical protein CLOBOL_00583 [Clostridium bolteae ATCC BAA-613] Length = 129 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 46/112 (41%), Gaps = 8/112 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R G +Q+ L + +G++ + EK A + + ++L + Sbjct: 18 LGERLNYARKQKGYTQDSLAQTIGVSRGVIFNLEKNKTEPQAIVINAVCQILNINKEWLT 77 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 D + + S + F S +L ++ + + +++ V+++ Sbjct: 78 DGTGDMESGNQA-------FQSAKLLEELYDIAKELSEDEQL-FLLDTVKAL 121 >gi|154501020|ref|ZP_02039058.1| hypothetical protein BACCAP_04707 [Bacteroides capillosus ATCC 29799] gi|150270044|gb|EDM97563.1| hypothetical protein BACCAP_04707 [Bacteroides capillosus ATCC 29799] Length = 114 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 2/99 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+G RI R + G+SQ L E ++ + E+G+ + L I+E L+ P Sbjct: 7 RNIGVRIHNLRKLRGLSQAALAERAELSTPYISHIERGMKLLSLPALLRIAEALDIPPGT 66 Query: 73 FFDVSPTVCSDISSEEN--NVMDFISTPDGLQLNRYFIQ 109 + T + + + L + Sbjct: 67 LLNDPNTPGNSHLEFAFLLDACSPVERQVIYDLVLAAKE 105 >gi|83853906|gb|ABC47902.1| RstR-like protein [Vibrio phage CTX] Length = 114 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 42/81 (51%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R+ + QE + + LGIT Q + K+EKG S+L+ +SE+ P D + Sbjct: 5 KIKQCRIEKNLKQEDVAKALGITTQTLLKWEKGDYEPKVSQLKKLSEIYGVPTCELIDDN 64 Query: 78 PTVCSDISSEENNVMDFISTP 98 +V S+ + +++ ++ Sbjct: 65 ESVSSEKMRAKLYLLEQLNEE 85 >gi|320536062|ref|ZP_08036120.1| helix-turn-helix protein [Treponema phagedenis F0421] gi|320147112|gb|EFW38670.1| helix-turn-helix protein [Treponema phagedenis F0421] Length = 115 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 22/70 (31%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ +QE + + I F+ Q + A L I++ L + + Sbjct: 29 NNVKPLIKEQNTTQEAIAKKCDIPFRTFQGWISKSIIPDAISLYKIAQSLNVSVEYLITG 88 Query: 77 SPTVCSDISS 86 ++ Sbjct: 89 RHPNNAETVD 98 >gi|300722701|ref|YP_003711991.1| putative DNA binding protein [Xenorhabdus nematophila ATCC 19061] gi|297629208|emb|CBJ89805.1| putative DNA binding protein [Xenorhabdus nematophila ATCC 19061] Length = 123 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 17 KRIRLRRMILGMSQEKLGECL-----GITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 KR+ R LG+SQ +LGE L + + +YE+G+N S + I+ +L+ P Sbjct: 4 KRLSESRKALGLSQRELGEKLGLYDEDVAKATISRYERGLNAPAYSTVCQIANILKVPPC 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKIIELVRSIVSSE 130 +F+ + + +L +I + ++E ++++S Sbjct: 64 YFYIDDDIFAEQVLKLYRKNNTPLEE----ELMIAKERILQYENALETVLETTKNVMSQL 119 Query: 131 KK 132 KK Sbjct: 120 KK 121 >gi|291279452|ref|YP_003496287.1| transcriptional regulator [Deferribacter desulfuricans SSM1] gi|290754154|dbj|BAI80531.1| transcriptional regulator [Deferribacter desulfuricans SSM1] Length = 193 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 1/94 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+++ R ++ +L + G + + + E+ + S L+ I++ LE I Sbjct: 13 MTIGKKVQELRQKKQLTLRQLSKLSGCSLGFLSQVERDLVSPTVSSLKKIADALEVNIMH 72 Query: 73 FFDVSPTVCSDIS-SEENNVMDFISTPDGLQLNR 105 FFD + EE N + + +L R Sbjct: 73 FFDHPSRYQRVVVKKEERNKLVNPKSKVTYELLR 106 >gi|227512586|ref|ZP_03942635.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227084201|gb|EEI19513.1| transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 198 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + V K +R R+ G S KL E G++ + + E + + I L P Sbjct: 12 DIGAIVSKNLRKIRLERGFSLTKLSELSGVSKGMLSQIENNGTSPTINTIWKICAGLNVP 71 Query: 70 ISFFFDVSPTVCSDISSEENN 90 + + I N Sbjct: 72 YTTLLEGRVETTKIIKKSAIN 92 >gi|197301964|ref|ZP_03167027.1| hypothetical protein RUMLAC_00694 [Ruminococcus lactaris ATCC 29176] gi|197298912|gb|EDY33449.1| hypothetical protein RUMLAC_00694 [Ruminococcus lactaris ATCC 29176] Length = 76 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+ I R G+S ++ T Q + K++ G L ++ VL+ I Sbjct: 5 GRNIMKLRKAAGLSVREMQNIFGFTTPQAIYKWQHGTAMPTIDNLVVLAAVLDVTIDEIL 64 >gi|167751298|ref|ZP_02423425.1| hypothetical protein EUBSIR_02284 [Eubacterium siraeum DSM 15702] gi|167655805|gb|EDR99934.1| hypothetical protein EUBSIR_02284 [Eubacterium siraeum DSM 15702] Length = 131 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 49/113 (43%), Gaps = 3/113 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFFFDV 76 +++ R G++Q++ + LG++ + + YEKG + + ++E+L I++ Sbjct: 6 KVKKERRAKGLTQQQFADILGVSLRTITNYEKGESYPKQREIYGKMAEILGVDINYLLTE 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + + + + ++ F + + + E++++I + Sbjct: 66 NEEFYINANEKYGATGAQQAKALMQEVTGLFAGGELDQ--DDMDEMMKAIQDA 116 >gi|119896658|ref|YP_931871.1| SgrAlc control protein [Azoarcus sp. BH72] gi|119669071|emb|CAL92984.1| SgrAlc control protein [Azoarcus sp. BH72] Length = 77 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P V + G +R R G SQE L E + + + E+G + ++ L+ Sbjct: 3 PASVIASFGAAVRQFRERHGWSQELLAERADLNRSYLGEVERGTVVPSLATAVKLAAALD 62 Query: 68 SPISFFFD 75 P+S Sbjct: 63 IPLSNLLS 70 >gi|260906752|ref|ZP_05915074.1| transcriptional regulator, XRE family protein [Brevibacterium linens BL2] Length = 69 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G++Q +L + G++ Q + E+G I++ L + + F + Sbjct: 8 LKQVRKSAGLTQAQLAQLTGVSRQTIIATERGDYAPSVYLALRIAKALATTVEEIFSLQE 67 Query: 79 TV 80 Sbjct: 68 ES 69 >gi|77404491|ref|YP_345067.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|77019872|dbj|BAE46247.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 89 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 40/89 (44%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + +GKRIR+ R+ GM+Q +L + G+ +++ EKG AS+L Sbjct: 1 METAPTARDLAVELGKRIRIERVERGMAQLELVKRTGLADSTIRRIEKGTRDASASQLHT 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENN 90 I+ V P+S + ++ Sbjct: 61 IAGVFGMPLSQLIARAEDSIERQRESQDQ 89 >gi|16760810|ref|NP_456427.1| regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|25512966|pir||AG0738 probable regulator STY2066 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503107|emb|CAD05610.1| putative regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|323977012|gb|EGB72099.1| helix-turn-helix protein [Escherichia coli TW10509] gi|324012832|gb|EGB82051.1| helix-turn-helix protein [Escherichia coli MS 60-1] Length = 139 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 11/136 (8%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K + ++ + R++ RR LG+SQ KL E G T ++ YE G VG + Sbjct: 5 NEKIAASRLNDKIAMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVL 64 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + L + +L F Q+ + ++ I Sbjct: 65 GKALGISPPELLFGEQESS-----------ELWLNESQRKLLELFNQLPGSEQQRMIELF 113 Query: 123 VRSIVSSEKKYRTIEE 138 + ++ Sbjct: 114 EVRLKEIDEYVEKYLR 129 >gi|320539393|ref|ZP_08039062.1| putative transcriptional regulator [Serratia symbiotica str. Tucson] gi|320030518|gb|EFW12528.1| putative transcriptional regulator [Serratia symbiotica str. Tucson] Length = 125 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 34/75 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++V R+ R G++Q+ L + +G+ Q+++YE G ++ ++ I++ L Sbjct: 10 MSMSVSTRLAYIRKSKGLTQQALADAIGLHVTQIKRYEAGTSQPSLEAIKKIAQTLRVTT 69 Query: 71 SFFFDVSPTVCSDIS 85 + D Sbjct: 70 DSLIFDEGELAPDAD 84 >gi|317508465|ref|ZP_07966134.1| hypothetical protein HMPREF9336_02506 [Segniliparus rugosus ATCC BAA-974] gi|316253243|gb|EFV12644.1| hypothetical protein HMPREF9336_02506 [Segniliparus rugosus ATCC BAA-974] Length = 177 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R M+ E+L E G+T + K E+G++ + I+ L ++ FD Sbjct: 5 LRAARHQQRMTLEELAERTGLTKSYLSKVERGLSTPSIAVALKIAGALGVDVARLFDPES 64 Query: 79 TVC 81 Sbjct: 65 GDE 67 >gi|309777519|ref|ZP_07672473.1| putative transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308914759|gb|EFP60545.1| putative transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 69 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RIR R ++QE L + ++ Q + EKG I+ + I F Sbjct: 3 NRIRELRQEYRLTQEDLAQQCRVSRQTIISLEKGKYDPSIHLAHRIATIFHQRIEDVF 60 >gi|297156604|gb|ADI06316.1| UDP-N-acetylglucosamine transferase [Streptomyces bingchenggensis BCW-1] Length = 509 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +GK IR R G +Q +L E L + V + E+G + + I E L Sbjct: 1 MTDDYLSRIGKLIRDARQHRGWTQAQLAEALNTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|262040795|ref|ZP_06014024.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259041880|gb|EEW42922.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 120 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 4/85 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLES 68 I V KR++ R+ ++QE L E + Q+ YE G + ++++ L Sbjct: 4 IMVPKRLKEARLRAKLTQEHLIELRRVDIVQDKSQISNYETGKFYPPFHFIVNVAKALNY 63 Query: 69 PISFFFDVSPTVCSDISSEENNVMD 93 P ++F+ + + + N + Sbjct: 64 PEAYFYTLDDDFAELLLNIHRNKRN 88 >gi|255102292|ref|ZP_05331269.1| putative phage DNA-binding protein [Clostridium difficile QCD-63q42] Length = 254 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 45/130 (34%), Gaps = 2/130 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES--PI 70 + +GK ++ R ++Q +L E I+ + YE L +++ L+ I Sbjct: 1 MQIGKNLKKIRKQKELTQIQLAEISDISRNALINYENDKRIPNIDTLSKLAKALKIEKTI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 +F + + ++ + + + + + L+ S + Sbjct: 61 FYFDIENEVITNEDVLYFLQSLFPEEYYSFDEFLNAISNLMEDDDIRITSSLLLGAWSDK 120 Query: 131 KKYRTIEEEC 140 +Y + E+ Sbjct: 121 DQYYKLGEKL 130 >gi|190890421|ref|YP_001976963.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190695700|gb|ACE89785.1| probable transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 469 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 38/117 (32%), Gaps = 2/117 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L ++Q + E L I+ + E+ + L ++ V + Sbjct: 9 GPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVDLEELRG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 S + + + P +L + +I+L R+ + Sbjct: 69 QSGGSLGQLKEVFADPLLSGELPGDQELVEVAEAAPNAA--SGMIKLYRAYREQAAR 123 >gi|168210271|ref|ZP_02635896.1| cI2009 [Clostridium perfringens B str. ATCC 3626] gi|170711658|gb|EDT23840.1| cI2009 [Clostridium perfringens B str. ATCC 3626] Length = 78 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 28/59 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ RR+I G S ++L + G+ + + E G+N+ + L +S I Sbjct: 16 IGTNIKRRRLIKGWSLKQLSKKSGVGIKTINDIELGINKPSKNTLYKLSRGFGVTIDKL 74 >gi|164687004|ref|ZP_02211032.1| hypothetical protein CLOBAR_00630 [Clostridium bartlettii DSM 16795] gi|164603889|gb|EDQ97354.1| hypothetical protein CLOBAR_00630 [Clostridium bartlettii DSM 16795] Length = 71 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 31/67 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R + ++Q ++G +G++ Q + + E+G + I++VL + F Sbjct: 5 NRLKEYRAKIKVNQTEMGNLVGVSRQTISQIERGDYSPSVTLALKIAKVLNVSVEEIFSY 64 Query: 77 SPTVCSD 83 ++ Sbjct: 65 EEGEENE 71 >gi|150402446|ref|YP_001329740.1| cupin 2 domain-containing protein [Methanococcus maripaludis C7] gi|150033476|gb|ABR65589.1| Cupin 2 conserved barrel domain protein [Methanococcus maripaludis C7] Length = 184 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 30/68 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R + +S E++ + L ++ + Q YE+G + AS L I+ E + Sbjct: 6 KEIASRVRELRELSEISIEEMADHLNVSPEIYQHYEEGTCDIPASVLYEIAHKFEVDMGL 65 Query: 73 FFDVSPTV 80 T Sbjct: 66 LLTGEETR 73 >gi|122879139|ref|YP_200480.6| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] Length = 461 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 10/134 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R G++Q +L L ++ + + E+ + + Q + L Sbjct: 11 QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRPLTLAIQQRLKATLGD----- 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVRSIVSSE 130 + + D + +D G L ++ +V Q +++L R+ Sbjct: 66 --LDGLLDLDDPAALVEPLDQSLRSLGHTLLPAELRALTGNLPQVAQALLDLHRAHQHLL 123 Query: 131 KKYRTIEEECMVEQ 144 ++ +E + VE Sbjct: 124 ERNAALELQIGVEH 137 >gi|91789185|ref|YP_550137.1| transcriptional regulator [Polaromonas sp. JS666] gi|91698410|gb|ABE45239.1| transcriptional regulator, XRE family with cupin sensor domain [Polaromonas sp. JS666] Length = 201 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 6/84 (7%) Query: 7 IPNPVDINV------GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 P P D V G R+R R++ G++ ++ + + + K E G + L Sbjct: 12 APTPEDAAVKPPSMLGVRLRHARLVAGLTMTQVAQKSQCSESLISKIESGQASPSLAMLH 71 Query: 61 HISEVLESPISFFFDVSPTVCSDI 84 I+ L++ I+ I Sbjct: 72 RIAVTLDTNIAALTTEEAPREGPI 95 >gi|42518979|ref|NP_964909.1| hypothetical protein LJ1054 [Lactobacillus johnsonii NCC 533] gi|41583266|gb|AAS08875.1| hypothetical protein LJ_1054 [Lactobacillus johnsonii NCC 533] Length = 392 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G++++ R + G S+ L + L +T Q + +YE ++ + ++ +SFF Sbjct: 4 GEKLKQLRELQGFSRNDLAKKLSLTEQTIGQYENNQITPRLDIMEKLLQIFHVDLSFF 61 >gi|70727102|ref|YP_254016.1| hypothetical protein SH2101 [Staphylococcus haemolyticus JCSC1435] gi|68447826|dbj|BAE05410.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 305 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI+ R+ +G +Q + G+ + V +EKGV+ A RL+ I+ + + Sbjct: 7 IGKRIKEIRLKIGKTQTQFGDLFSASKGNVATWEKGVSLPNAKRLKEIARLGDMTTDQLL 66 Query: 75 DV 76 Sbjct: 67 YG 68 >gi|77405440|ref|ZP_00782533.1| cI-like repressor [Streptococcus agalactiae H36B] gi|77175933|gb|EAO78709.1| cI-like repressor [Streptococcus agalactiae H36B] Length = 69 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG++IR +R + ++Q +L + L Q V E G R L + ++ + F Sbjct: 6 FVGEQIRHQRKLAKLTQSQLADLLETNQQTVGMMENGRRRTTIQDLVKLCKIFNASADDF 65 Query: 74 F 74 Sbjct: 66 L 66 >gi|110632671|ref|YP_672879.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110283655|gb|ABG61714.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 474 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 2/114 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R G++Q + E LGI+ + E+ + A + + V + Sbjct: 10 GARVRRIRHSKGLTQTGMAEGLGISPSYLNLIERNQRPLTAQLILKLVSVYKVDPDELQT 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + +++ ++ + P +L +I+L R+ Sbjct: 70 DAGASLANLREVFSDPLLSGELPGESELLD--FADAAPNAAAALIKLYRAYREQ 121 >gi|183217341|gb|ACC59260.1| antitoxin PezA [Streptococcus pneumoniae] Length = 158 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHELTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|313677248|ref|YP_004055244.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] gi|312943946|gb|ADR23136.1| helix-turn-helix domain protein [Marivirga tractuosa DSM 4126] Length = 118 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 2/99 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G ++ R LG+SQ +L + L I +++ YE G + ++ +++ Sbjct: 4 NKLIGLNLKRYRESLGLSQVQLADYLSINREEISYYENGKRTMPVKLIEKAAKLFGIDEF 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 ++ P + + L+ F +I Sbjct: 64 DLYESDPEHNDAKVALAFRADSLG--KEDLEQIADFRKI 100 >gi|300119011|ref|ZP_07056722.1| transcriptional regulator, PBSX family protein [Bacillus cereus SJ1] gi|298723627|gb|EFI64358.1| transcriptional regulator, PBSX family protein [Bacillus cereus SJ1] Length = 83 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 22 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|325675508|ref|ZP_08155192.1| DNA binding regulatory protein [Rhodococcus equi ATCC 33707] gi|325553479|gb|EGD23157.1| DNA binding regulatory protein [Rhodococcus equi ATCC 33707] Length = 241 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 4/136 (2%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 ++ P + + + ++ R MS L + ++ Q + K E+GV + Sbjct: 37 TSTERRPVDSNGLIARNVQRFRNERQMSMGDLAKRADLSKQTLSKIEQGVGNPTVETIDA 96 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L+ P+ T + + E D L++ + VR I+ Sbjct: 97 IATALDVPLRRLVTEWGTRVFVVRAGEGVWNDKNDAGTTKVLDQIY---GSGYVRTSIMR 153 Query: 122 L-VRSIVSSEKKYRTI 136 L + + + R Sbjct: 154 LRASATAAPDDLVRAA 169 >gi|282865815|ref|ZP_06274865.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] gi|282559459|gb|EFB65011.1| transcriptional regulator, XRE family [Streptomyces sp. ACTE] Length = 721 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 10/77 (12%), Positives = 29/77 (37%), Gaps = 4/77 (5%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 R G++QE++ L + V +E G + + + + + ++ P Sbjct: 26 RLRKAHGLTQEQVAAALKVRRPTVVSWENGRTEPRPPQREAYARL----LEKLAELYPAR 81 Query: 81 CSDISSEENNVMDFIST 97 +D + + + ++ Sbjct: 82 AADDAEDTHEAEAPQTS 98 >gi|260219709|emb|CBA26554.1| hypothetical protein Csp_E36420 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 121 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 52/109 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG+ + +R + ++QE + L + + + E+GV + SRL ++ + + I Sbjct: 7 INKIVGRLVAKKREAVSLTQEDVAGRLNLNTESYGRIERGVTPLTVSRLVKLATLFQCGI 66 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + T + + N++D +S+ D ++ + +I + ++ + Sbjct: 67 DELVLETSTGLTGQAQYIANMLDGVSSSDRDEIVKIVEKICALSHKKHL 115 >gi|240141318|ref|YP_002965798.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] gi|240011295|gb|ACS42521.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens AM1] Length = 209 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 32/91 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R +S +L E G+ + + E+ + + +S+ L+ I Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLTTIWRLSQALDVSIERV 85 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S + +S ++L Sbjct: 86 LATSDEEPFIERFSRADTPRLVSDDGKVRLA 116 >gi|254507617|ref|ZP_05119750.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus 16] gi|219549504|gb|EED26496.1| transcriptional regulator, XRE family [Vibrio parahaemolyticus 16] Length = 103 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLE 67 D + R++ R ++Q++LG +G+ + YEKG + L+ I+E L+ Sbjct: 4 DNPIPARLKAARKKAKITQKELGVKIGMEESSASGRMNHYEKGRHVPDIGTLRRIAEELD 63 Query: 68 SPISFFFDVSP 78 P+++FF + Sbjct: 64 VPLNYFFCDNE 74 >gi|110680995|ref|YP_684002.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109457111|gb|ABG33316.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 229 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R G++ +L GI+ + K E G + LQ ++ L P+ Sbjct: 41 LEVAIGREVRGHRKQHGITVAELSALTGISIGMLSKIENGNTSPSLTTLQTLAHALSVPL 100 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF + + ++ Sbjct: 101 TSFFRRFEESRVAVHTRAGEGVEI 124 >gi|147678924|ref|YP_001213139.1| transcriptional regulator [Pelotomaculum thermopropionicum SI] gi|146275021|dbj|BAF60770.1| predicted transcriptional regulator [Pelotomaculum thermopropionicum SI] Length = 171 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 29/99 (29%), Gaps = 3/99 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R L ++Q + E L I+ V K EK L +I + Sbjct: 4 GARIQEIRKTLNLTQAEFAEKLRISQAHVSKIEKDQISPSELLLSYICCNFHVSRKWLDT 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + N ++ I D + Sbjct: 64 GQGEMFISPERILKNQ---MARFGEQAFLNAISNILDER 99 >gi|66768392|ref|YP_243154.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|66573724|gb|AAY49134.1| transcriptional regulator, HTH_3 family [Xanthomonas campestris pv. campestris str. 8004] Length = 412 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 39/86 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ L R GM + +L E +G+T + V YE G ++ L +SE L P +FFF Sbjct: 29 RLTLARKRRGMKKRELAEKIGLTEKSVSNYEAGSQEPESTTLSKLSEALRFPEAFFFGDD 88 Query: 78 PTVCSDISSEENNVMDFISTPDGLQL 103 P V + + ++ + L Sbjct: 89 PEVPTPDVASFRSLSKMSAPQRDSAL 114 >gi|325290127|ref|YP_004266308.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324965528|gb|ADY56307.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 80 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 33/75 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +I+ R L M+Q++L E + + + K E G + L I+ L+ I+ D Sbjct: 5 GIQIKALRKSLNMTQKQLAELVKLDESMINKIENGHSVGSVQTLSKIAAALKVSITELLD 64 Query: 76 VSPTVCSDISSEENN 90 + E+++ Sbjct: 65 DPCFPLENKKPEDDH 79 >gi|322376567|ref|ZP_08051060.1| conserved domain protein [Streptococcus sp. M334] gi|321282374|gb|EFX59381.1| conserved domain protein [Streptococcus sp. M334] Length = 73 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R ++Q+++ + L T K E+G + + A L +S + + + Sbjct: 3 RRLRDLRKDHDLTQKQIAKILSFTNSAYAKIERGEHALTADVLVTLSNFYDVSTDYLLGL 62 Query: 77 SP 78 + Sbjct: 63 TD 64 >gi|293606756|ref|ZP_06689108.1| DNA-binding protein [Achromobacter piechaudii ATCC 43553] gi|292814847|gb|EFF73976.1| DNA-binding protein [Achromobacter piechaudii ATCC 43553] Length = 184 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 37/102 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R +S E+L + G+T + K E+G++ S + ++E +S Sbjct: 7 RLRTLRRQQALSLEQLAQRTGLTKSYLSKLERGLSEPSISTVLRLAEAYGVGVSQLVGAD 66 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 ++ S G ++ + + + + Sbjct: 67 DAAQDEVVSVVRVADREALQRGGPGSQYHYESLAGHRKIKAM 108 >gi|289434677|ref|YP_003464549.1| DNA-binding domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170921|emb|CBH27463.1| DNA-binding domain protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 311 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 38/116 (32%), Gaps = 6/116 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G +++ R G+S + L + I + + E+G V + +E + Sbjct: 3 ELGDKLKQARREKGLSLDDLQQITKIQKRYLVAIEEGNYAVMPGKFYARAFIKQYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + FD + + +E + + V R + +++ Sbjct: 63 LDSATLFDEFESEVPETPQQEVVNNEPSRVQSKRNPMPAQSVGNQVNSRNRFFDIL 118 >gi|170760185|ref|YP_001785975.1| cupin domain-containing protein [Clostridium botulinum A3 str. Loch Maree] gi|169407174|gb|ACA55585.1| cupin domain protein [Clostridium botulinum A3 str. Loch Maree] Length = 183 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 27/68 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + + ++ R +S +L E I+ + + EK + L I+ L+ P Sbjct: 3 INSIIAENLKTLRTERNLSLGQLAELSNISKVMLSQIEKSDTNPTINTLWKIANGLKVPY 62 Query: 71 SFFFDVSP 78 + + Sbjct: 63 TLLLEQKE 70 >gi|154504728|ref|ZP_02041466.1| hypothetical protein RUMGNA_02235 [Ruminococcus gnavus ATCC 29149] gi|153794902|gb|EDN77322.1| hypothetical protein RUMGNA_02235 [Ruminococcus gnavus ATCC 29149] Length = 117 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R+ M+QE+L E + + E G + L I VLE I Sbjct: 12 LGERLKEARIKKHMTQEELSEKIDSATSSISHLENGTHSPSLKTLIKICNVLEIGIDALL 71 Query: 75 DVSPTVCSDISSEEN 89 S + S +++ Sbjct: 72 CDSLSAISSSYLDKD 86 >gi|84500659|ref|ZP_00998908.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] gi|84391612|gb|EAQ03944.1| DNA-binding protein, putative [Oceanicola batsensis HTCC2597] Length = 214 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 30/72 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R M+ +L G++ + K E GV + + ++ L+ P+ Sbjct: 26 LEVAIGREVRSLRHRQRMTGAELAAQTGLSVGMLSKIENGVISPSLTTISALAHALKVPL 85 Query: 71 SFFFDVSPTVCS 82 F Sbjct: 86 VQLFSGYEEPRG 97 >gi|49183405|ref|YP_026657.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49479896|ref|YP_034718.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52144853|ref|YP_081974.1| PbsX family transcriptional regulator [Bacillus cereus E33L] gi|65317820|ref|ZP_00390779.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|222094186|ref|YP_002528243.1| transcriptional regulator, pbsx family [Bacillus cereus Q1] gi|228913138|ref|ZP_04076777.1| hypothetical protein bthur0012_3820 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925643|ref|ZP_04088732.1| hypothetical protein bthur0010_3700 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931891|ref|ZP_04094787.1| hypothetical protein bthur0009_3770 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228944196|ref|ZP_04106575.1| hypothetical protein bthur0007_3720 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089510|ref|ZP_04220779.1| hypothetical protein bcere0021_3560 [Bacillus cereus Rock3-42] gi|229120049|ref|ZP_04249304.1| hypothetical protein bcere0016_3680 [Bacillus cereus 95/8201] gi|229137252|ref|ZP_04265869.1| hypothetical protein bcere0013_3870 [Bacillus cereus BDRD-ST26] gi|229182776|ref|ZP_04310016.1| hypothetical protein bcere0004_3580 [Bacillus cereus BGSC 6E1] gi|229194768|ref|ZP_04321557.1| hypothetical protein bcere0001_3520 [Bacillus cereus m1293] gi|49177332|gb|AAT52708.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49331452|gb|AAT62098.1| transcriptional regulator, PBSX family [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978322|gb|AAU19872.1| transcriptional regulator, PBSX family [Bacillus cereus E33L] gi|221238241|gb|ACM10951.1| transcriptional regulator, PBSX family [Bacillus cereus Q1] gi|228588711|gb|EEK46740.1| hypothetical protein bcere0001_3520 [Bacillus cereus m1293] gi|228600749|gb|EEK58329.1| hypothetical protein bcere0004_3580 [Bacillus cereus BGSC 6E1] gi|228646247|gb|EEL02464.1| hypothetical protein bcere0013_3870 [Bacillus cereus BDRD-ST26] gi|228663515|gb|EEL19100.1| hypothetical protein bcere0016_3680 [Bacillus cereus 95/8201] gi|228693817|gb|EEL47511.1| hypothetical protein bcere0021_3560 [Bacillus cereus Rock3-42] gi|228815585|gb|EEM61827.1| hypothetical protein bthur0007_3720 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228827871|gb|EEM73609.1| hypothetical protein bthur0009_3770 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834121|gb|EEM79669.1| hypothetical protein bthur0010_3700 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846543|gb|EEM91556.1| hypothetical protein bthur0012_3820 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 83 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 22 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|266621408|ref|ZP_06114343.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] gi|288866922|gb|EFC99220.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] Length = 66 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RI+ R M QE+L + +G+ + + EKG +I++V + I Sbjct: 1 MIKNRIKEYRARYDMKQEELADRVGVRRETIGNLEKGKYNPSLVLAWNIAKVFGATIEEI 60 Query: 74 FDVSPT 79 F V + Sbjct: 61 FTVEES 66 >gi|227484868|ref|ZP_03915184.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] gi|227237228|gb|EEI87243.1| conserved hypothetical protein [Anaerococcus lactolyticus ATCC 51172] Length = 145 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 41/114 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R L +S K E LG++ + E+G N + ++ I + ++ Sbjct: 32 NRLKQLRTTLKLSGAKFAEPLGVSRSAISDIERGRNNLSEQMIKLICTTYKVNENWLRLG 91 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + + + P L + + + +D + + ++ E Sbjct: 92 EGDMFIASDKIPLDDLTKDADPLELAILKAYFSLDKDLRSKALQHFKDQLIDKE 145 >gi|188587728|ref|YP_001920281.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska E43] gi|188498009|gb|ACD51145.1| transcriptional regulator [Clostridium botulinum E3 str. Alaska E43] Length = 121 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISF 72 +G ++ +R+ ++ + L + G+ + E G LQ ++ L+ ++ Sbjct: 3 YIGNFLKNKRIEKKLTLKDLSDLSGVGPSTISDIETGKALNPRMITLQKLASSLDISVND 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 FF+ D + +N ++ D + + + KV + + + + ++ E Sbjct: 63 FFEERKIDIIDENLIKNVDIEKQKQIDTVAAHLEDKHLTPKKV-KLLKDYIDALFDDE 119 >gi|153954271|ref|YP_001395036.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|146347152|gb|EDK33688.1| Transcriptional regulator [Clostridium kluyveri DSM 555] Length = 207 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+R R ++Q + L +T + KYE G + L+ +S+ I + Sbjct: 6 RLRELREENNLTQGAIASILNLTKANISKYELGRLQPNIETLKLLSDHFNVSIDYL 61 >gi|85707731|ref|ZP_01038797.1| putative DNA binding protein [Erythrobacter sp. NAP1] gi|85689265|gb|EAQ29268.1| putative DNA binding protein [Erythrobacter sp. NAP1] Length = 68 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G SQ +L LG++ Q + E ++++ + F Sbjct: 3 NRLKYHREAEGWSQGELARRLGVSRQTINAVETDKYDPSLPLALRMAKLFGVSVPDLF 60 >gi|325264148|ref|ZP_08130880.1| putative transcriptional regulator, XRE family with cupin sensor domain protein [Clostridium sp. D5] gi|324030632|gb|EGB91915.1| putative transcriptional regulator, XRE family with cupin sensor domain protein [Clostridium sp. D5] Length = 189 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 2/91 (2%) Query: 1 MVG--NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M N++I + +VG +IR R ++ ++LG+ G++ + E+ Sbjct: 1 MAELFNERIGEEQNDDVGGKIRALRKEKDITLKQLGKETGLSIGYLSNLERDACSPTLDN 60 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEEN 89 LQ I VLE + D I EE Sbjct: 61 LQKICGVLEISLIELLDGMNQGRRVIRKEER 91 >gi|312136641|ref|YP_004003978.1| transcriptional regulator [Methanothermus fervidus DSM 2088] gi|311224360|gb|ADP77216.1| transcriptional regulator [Methanothermus fervidus DSM 2088] Length = 182 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G RI+ R + +S +++ + LGI + +KYE G + S L +++ L Sbjct: 2 HEKSKEIGLRIKELRKLSNISAKEMSKFLGIPVELYKKYENGEEDIPVSLLFEVAQKLNV 61 Query: 69 PISFFFDVSPTV 80 + T Sbjct: 62 DMGLLLTGKETR 73 >gi|331647421|ref|ZP_08348513.1| putative regulator [Escherichia coli M605] gi|331043145|gb|EGI15283.1| putative regulator [Escherichia coli M605] Length = 139 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 43/136 (31%), Gaps = 11/136 (8%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K + ++ + R++ RR LG+SQ KL E G T ++ YE G VG + Sbjct: 5 NEKIAASRLNDKIAMRLKERRQKLGLSQGKLAEICGWTQSRIGNYEAGSRNVGVHDAVVL 64 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + L + +L F Q+ + ++ I Sbjct: 65 GKALGISPPELLFGEQESS-----------ELWLNESQRKLLELFNQLPGSEQQRMIELF 113 Query: 123 VRSIVSSEKKYRTIEE 138 + ++ Sbjct: 114 EVRLKEIDEYVEKYLR 129 >gi|297158498|gb|ADI08210.1| DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 159 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 46/115 (40%), Gaps = 11/115 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R +R +S +L + G++ + + E+G+ + A LQ +++ L + Sbjct: 9 LGEFLREQRRSAQLSLRQLADAAGVSNPYLSQIERGLRKPSAEILQQLAKALRISAETLY 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + E ++ P + + + +Q ++++ S Sbjct: 69 VQAGILDERERDETETRSVILADP-----------LINERQKQVLLQIYESFRKE 112 >gi|291521725|emb|CBK80018.1| Predicted transcriptional regulators [Coprococcus catus GD/7] Length = 129 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 26/63 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R G+S E+L E ++ + E + L IS LE I Sbjct: 8 IGKRIRETRKQRGLSAEELAEIADLSTVYISYIENAKRKPSLESLIKISNALEITIDELL 67 Query: 75 DVS 77 + Sbjct: 68 YGN 70 >gi|293401684|ref|ZP_06645826.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304942|gb|EFE46189.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 201 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 2/98 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R L SQ+ E LGI + YE N L +I++ + + Sbjct: 7 LGDKLQYLRKTLTFSQKDFAEFLGIPQPSLSAYENNRNSPTVDVLINIAKKCNISLDWLC 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +S S +V DF+ + I+I D Sbjct: 67 GIS--TSKQTLSSLGDVSDFLYLLMETNQIKLNIEIHD 102 >gi|270157680|ref|ZP_06186337.1| putative phage repressor [Legionella longbeachae D-4968] gi|269989705|gb|EEZ95959.1| putative phage repressor [Legionella longbeachae D-4968] Length = 228 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 1/80 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G RI+ R G++++ L E + ++ YE+G G + ++ ++E LE Sbjct: 4 SIKEKIGNRIKNERTAKGLTRKALAELTESLKVSRINNYERGERTPGPNEIKQLAEALEV 63 Query: 69 PISFFFDVSPTVCSDISSEE 88 +F +S + Sbjct: 64 SPAFLMCLSDDRQGKLKQAP 83 >gi|227894126|ref|ZP_04011931.1| transcription regulator [Lactobacillus ultunensis DSM 16047] gi|227864071|gb|EEJ71492.1| transcription regulator [Lactobacillus ultunensis DSM 16047] Length = 393 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 29/58 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+++R R + G S+ +L + L ++ Q + +YE ++ + E+ + FF Sbjct: 4 GEKLRQLRELHGFSRNELAQKLNVSEQTIGQYENNQITPRLDIMRKLPEMFSVNMHFF 61 >gi|222086077|ref|YP_002544609.1| transcription regulator protein [Agrobacterium radiobacter K84] gi|221723525|gb|ACM26681.1| transcription regulator protein [Agrobacterium radiobacter K84] Length = 140 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G RI + R G+S E L LG+ + + +E + ++ L ++ + + Sbjct: 16 DDTLGGRISMARDAAGISLESLAGQLGVNQETMLAWESDRSEPKSAVLATMAGLFGVSPA 75 Query: 72 FFFDVSPTVCSDISSE 87 + + + S E Sbjct: 76 WLMTGTGDGPREDSEE 91 >gi|169833072|ref|YP_001695308.1| transcriptional activator [Streptococcus pneumoniae Hungary19A-6] gi|168995574|gb|ACA36186.1| transcriptional activator [Streptococcus pneumoniae Hungary19A-6] Length = 287 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + S++S+ + + + L + Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYDNLEYIYR 96 >gi|166712847|ref|ZP_02244054.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola BLS256] Length = 461 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 10/134 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R G++Q +L L ++ + + E+ + + Q + L Sbjct: 11 QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRPLTLAIQQRLKATLGD----- 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVRSIVSSE 130 + + D + +D G L ++ +V Q +++L R+ Sbjct: 66 --LDGLLDLDDPAALVEPLDQSLRSLGHTLLPAELRALTGNLPQVAQALLDLHRAHQHLL 123 Query: 131 KKYRTIEEECMVEQ 144 ++ +E + VE Sbjct: 124 ERNAALELQIGVEH 137 >gi|164686229|ref|ZP_02210259.1| hypothetical protein CLOBAR_02667 [Clostridium bartlettii DSM 16795] gi|164601831|gb|EDQ95296.1| hypothetical protein CLOBAR_02667 [Clostridium bartlettii DSM 16795] Length = 60 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +++ R G+ Q+ + + +GIT E G R I + + + F+ Sbjct: 2 SKLKQLREERGLPQKAVAKSVGITTSYYGMIELGTRRPSLDLAIRICKYFDLSVEEVFE 60 >gi|153954530|ref|YP_001395295.1| hypothetical protein CKL_1912 [Clostridium kluyveri DSM 555] gi|146347388|gb|EDK33924.1| Hypothetical protein CKL_1912 [Clostridium kluyveri DSM 555] Length = 100 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 41/97 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+RI+ R+ ++ +L + +G+T + + + E L+ + L ++ Sbjct: 1 MQFGERIKSLRLSNKLTATQLAKDIGVTREYLSRLENNAKSPSFELLEKLCGALNITLAE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 FF + +E + TP+ L+ FI+ Sbjct: 61 FFKTDSSDIIPEHFKEFINQNKNLTPEQLEKLNEFIK 97 >gi|332992547|gb|AEF02602.1| XRE family transcriptional regulator [Alteromonas sp. SN2] Length = 87 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 10/89 (11%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGAS 57 + N + P P KR++ R G+SQ++LG G+ ++ +YEKGV+ Sbjct: 1 MNNDESPFP------KRLKQARKDRGLSQKQLGILSGMDEFSASARMNQYEKGVHSPDFK 54 Query: 58 RLQHISEVLESPISFFFDVSPTVCSDISS 86 ++ ++EVL+ P +F + + I+S Sbjct: 55 TVKALAEVLKVPTAFLYCEEDDLAEQIAS 83 >gi|328468704|gb|EGF39689.1| hypothetical protein AAULH_04649 [Lactobacillus helveticus MTCC 5463] Length = 288 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 58/133 (43%), Gaps = 5/133 (3%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ +G++++ R+ LG+++++ + I + EKG + + A L I + + Sbjct: 32 DMTIGEKLKALRLSLGLNKKEFAHGI-INSSYLASIEKGESEIRAIDLIEILQQHNLSVL 90 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI-IELVR---SIV 127 F V S+++ E+ + D +L + + +++ I + + + ++ Sbjct: 91 SFLVDFGNVKSNLAVYEHEADNAFFAQDTQRLIQIGNLCPNTLIKEVIQLMVAKLDGNLA 150 Query: 128 SSEKKYRTIEEEC 140 K +T ++ Sbjct: 151 DFPKDIQTKIKKI 163 >gi|323490470|ref|ZP_08095677.1| putative HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2] gi|323395874|gb|EGA88713.1| putative HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2] Length = 145 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 30/67 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G +Q LG+ + +T Q + EKG + +++ L++ ++ F + Sbjct: 78 NRVKELRARYGFTQSDLGKQVDVTRQTIAFIEKGEFSPSITLSLKLAKALQTNVNDLFWL 137 Query: 77 SPTVCSD 83 + Sbjct: 138 EEDEKHE 144 >gi|298717173|ref|YP_003729815.1| HTH-type transcriptional regulatory protein [Pantoea vagans C9-1] gi|298361362|gb|ADI78143.1| Putative HTH-type transcriptional regulatory protein [Pantoea vagans C9-1] Length = 192 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 1/94 (1%) Query: 1 MVGN-KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+ + ++ +G +++ R G S L E G++ + K E+G + A+ L Sbjct: 1 MLDELSSKEDDLNARIGLKVKAERERRGWSLTDLAENSGVSRAMIHKIERGESSPTATLL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 +S + +S + EN + Sbjct: 61 ARLSGAFDMSMSQLLAEMEVRTGVLVRYENQAVW 94 >gi|296119241|ref|ZP_06837810.1| transcriptional regulator, Cro/CI family [Corynebacterium ammoniagenes DSM 20306] gi|295967762|gb|EFG81018.1| transcriptional regulator, Cro/CI family [Corynebacterium ammoniagenes DSM 20306] Length = 72 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R G+SQ+KL + LG++ Q + EKG ++ E I F Sbjct: 3 NNLKAFRDKAGLSQQKLADALGVSRQTIISIEKGRYDPSLPLAFQLAAKFECLIEDLF 60 >gi|291562330|emb|CBL41146.1| Helix-turn-helix [butyrate-producing bacterium SS3/4] Length = 96 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 GKR+ R G++QE+L LG+ + Q V + E G L +S +L Sbjct: 6 KEFGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERNCSIDLLIELSCILHVSTD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFIST 97 + S ++ ++ +++ +ST Sbjct: 66 YLLMGSEPSKEEVKNDLLSIISELST 91 >gi|315498461|ref|YP_004087265.1| transcriptional regulator, xre family [Asticcacaulis excentricus CB 48] gi|315416473|gb|ADU13114.1| transcriptional regulator, XRE family [Asticcacaulis excentricus CB 48] Length = 70 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 23/59 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R++ R G++Q L L ++ Q V E + I+ + + + F+ Sbjct: 3 NRLKDLRTEAGLTQADLAARLNVSRQAVIAIESDKHDPSLDLAYRIAAIFDLAVEAIFE 61 >gi|225872075|ref|YP_002753530.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225793611|gb|ACO33701.1| DNA-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 363 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 12/75 (16%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE--------- 64 V K I+ R L MSQ++ LG+ V ++E+G R +++ Sbjct: 108 QVAKNIKALRERLEMSQQRFALALGVDQGSVSRWERGKIRPTPETFARMAKLSDDEKKLY 167 Query: 65 ---VLESPISFFFDV 76 P S+F Sbjct: 168 FLEEAGVPASYFLGE 182 >gi|182440037|ref|YP_001827756.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780706|ref|ZP_08239971.1| Cupin 2 conserved barrel domain protein [Streptomyces cf. griseus XylebKG-1] gi|178468553|dbj|BAG23073.1| putative transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326661039|gb|EGE45885.1| Cupin 2 conserved barrel domain protein [Streptomyces cf. griseus XylebKG-1] Length = 190 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 9/76 (11%), Positives = 25/76 (32%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + ++ R G + + L G++ + + E+ +++ L I+ Sbjct: 11 LARNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLL 70 Query: 75 DVSPTVCSDISSEENN 90 D + E Sbjct: 71 DHEEGAQVRLVPESRA 86 >gi|169544294|ref|YP_001693069.1| XRE family transcriptional regulator [Yersinia enterocolitica] gi|168218478|emb|CAP20221.1| transcriptional regulator, XRE family [Yersinia enterocolitica] Length = 83 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 4/73 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQ----KYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ GM+QE+LG GI + YE G ++ + ++VL+ P +F Sbjct: 5 RLKSARLRAGMTQERLGVLAGIDESTARSRVSHYETGTHKPTYDTMCLFAKVLDVPECYF 64 Query: 74 FDVSPTVCSDISS 86 + + + + Sbjct: 65 YILDDGFAESVLN 77 >gi|149003610|ref|ZP_01828475.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP14-BS69] gi|147758342|gb|EDK65342.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP14-BS69] Length = 287 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 2/97 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + S++S+ + + + + Y +I+ Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNY-ENLEYIYRIE 98 >gi|146322242|ref|YP_001174729.1| hypothetical protein pGdh442_p22 [Lactococcus lactis] gi|145968733|gb|ABQ00011.1| hypothetical protein [Lactococcus lactis] Length = 201 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 1/87 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R G +QE L E IT + +Q+ E G V L IS L P+S F+ Sbjct: 5 RVAELRKKRGWTQEVLAEKANITVRTIQRIENGT-DVSLDTLASISNALLVPVSELFERI 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + + I + Sbjct: 64 DEEAKEVEIMDMSKEQLIQLKYRQTIT 90 >gi|47459180|ref|YP_016042.1| adenine-specific DNA methyltransferase [Mycoplasma mobile 163K] gi|47458509|gb|AAT27831.1| adenine-specific DNA methyltransferase [Mycoplasma mobile 163K] Length = 361 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R +SQ++L E GI +Q+ + E G+ L IS L + + Sbjct: 9 GTRLKELRKSKQISQKELSESTGIVREQISRIENGLVNPTLDTLHKISLALNIFLHELLN 68 Query: 76 VSPTVCSDI 84 + Sbjct: 69 FEINSKENS 77 >gi|73670782|ref|YP_306797.1| transcriptional regulator [Methanosarcina barkeri str. Fusaro] gi|72397944|gb|AAZ72217.1| transcriptional regulator, Hth-3 family [Methanosarcina barkeri str. Fusaro] Length = 68 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R ++QE L + +G+ + + EKG IS L + I F Sbjct: 4 RIKEFRARHDLTQEALAKMVGVRRETIVFLEKGKYNPSLKLAYRISRCLNATIDELFIFE 63 Query: 78 PTV 80 T Sbjct: 64 DTD 66 >gi|146294918|ref|YP_001185342.1| helix-turn-helix domain-containing protein [Shewanella putrefaciens CN-32] gi|145566608|gb|ABP77543.1| helix-turn-helix domain protein [Shewanella putrefaciens CN-32] Length = 68 Score = 43.3 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + I G ++R R G+SQEK+ I + + E+G + + ++E L Sbjct: 3 DLAIQFGAKLREERKRRGISQEKVALLTEIDRSYMGRIERGEVNITLEKAYQLAEALGCD 62 Query: 70 ISFFF 74 I Sbjct: 63 IRVLL 67 >gi|323700205|ref|ZP_08112117.1| helix-turn-helix domain protein [Desulfovibrio sp. ND132] gi|323460137|gb|EGB16002.1| helix-turn-helix domain protein [Desulfovibrio desulfuricans ND132] Length = 294 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G+R+R R+ ++ E + + GI+ + +YE G + L I+++L+ + Sbjct: 10 HLGERLRAYRIGKNLTPENVAQRTGISRAAIYRYESGQ-PIRVDVLGKIADLLQVSLESL 68 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 V CS + + T + L Sbjct: 69 LGVGVEYCSSALAFFERMRQLEETAEQL 96 >gi|309778439|ref|ZP_07673354.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308913802|gb|EFP59627.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 211 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GM Q++L + +GI Q + K E+G+N L+ I +VL + Sbjct: 10 FLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGMNYPTFDTLEKIMDVLGVTPNEL 69 Query: 74 FDVS 77 Sbjct: 70 LSGE 73 >gi|291551231|emb|CBL27493.1| Helix-turn-helix [Ruminococcus torques L2-14] Length = 209 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ ++ + QL + +D + ++ +++ Sbjct: 70 KGETDEYETDITDKKELQIRDAMGDILKQLPLDLSKKEDAFSKDLLLLMLKQ 121 >gi|261885677|ref|ZP_06009716.1| hypothetical protein CfetvA_11379 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 242 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + K+I+ R+ G +Q L + G++ +++YE + + L+ I+ + IS Sbjct: 9 MRLSKKIKEYRLEKGWTQYDLAKFSGVSLGSIKRYETDNGNITYANLEKIANAFQKDISN 68 Query: 73 F 73 F Sbjct: 69 F 69 >gi|229158911|ref|ZP_04286968.1| hypothetical protein bcere0010_50830 [Bacillus cereus ATCC 4342] gi|228624522|gb|EEK81292.1| hypothetical protein bcere0010_50830 [Bacillus cereus ATCC 4342] Length = 287 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 3/105 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +V + + + +S Q + + + ++K Sbjct: 65 EVLVYSDIERKKLFKDRIQMLSKKK--QYAEIYNIVSNELKKEKF 107 >gi|229171236|ref|ZP_04298828.1| hypothetical protein bcere0006_3650 [Bacillus cereus MM3] gi|228612253|gb|EEK69483.1| hypothetical protein bcere0006_3650 [Bacillus cereus MM3] Length = 64 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 3 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60 >gi|169350310|ref|ZP_02867248.1| hypothetical protein CLOSPI_01071 [Clostridium spiroforme DSM 1552] gi|169293093|gb|EDS75226.1| hypothetical protein CLOSPI_01071 [Clostridium spiroforme DSM 1552] Length = 185 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 37/81 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +I++ R G++ E+L +T + + E+ + + L+ I E L + + Sbjct: 9 MDIGGKIKMLRQANGLTLEELANRSELTKGFLSQLERDLTSPSITTLEDILEALGTNLQE 68 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF P ++ V + Sbjct: 69 FFSEKPAEQIVFKKDDFFVNE 89 >gi|194442417|ref|YP_002040915.1| Cro/CI family transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401080|gb|ACF61302.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 200 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 30/72 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ V +RI+ R MS ++L G++ + + E + L I+ + Sbjct: 16 STINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGV 75 Query: 69 PISFFFDVSPTV 80 ++ +V+ Sbjct: 76 SVADVVNVASEP 87 >gi|153852685|ref|ZP_01994122.1| hypothetical protein DORLON_00104 [Dorea longicatena DSM 13814] gi|149754327|gb|EDM64258.1| hypothetical protein DORLON_00104 [Dorea longicatena DSM 13814] Length = 83 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 32/70 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R LG++Q ++G+ G++ Q + + E+G + ++++ E + F Sbjct: 13 NRLKEYRSRLGVNQTEMGKLAGVSRQTISQIERGDYSPSVTLALKLAKICEVNVEDIFIY 72 Query: 77 SPTVCSDISS 86 + + Sbjct: 73 EEEINDEGKE 82 >gi|149203644|ref|ZP_01880613.1| transcriptional regulator, XRE family with cupin sensor [Roseovarius sp. TM1035] gi|149142761|gb|EDM30803.1| transcriptional regulator, XRE family with cupin sensor [Roseovarius sp. TM1035] Length = 211 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 25/74 (33%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + ++G R++ R G + E + G+ + K E G L I+ + Sbjct: 21 HQLRADLGARMKAVRQACGYTLEVAAQRTGLALSTIHKIENGRVSPSYENLIKIARAYDI 80 Query: 69 PISFFFDVSPTVCS 82 + F Sbjct: 81 GMERLFSADHDATQ 94 >gi|182627296|ref|ZP_02954983.1| transcriptional regulator, Cro/CI family [Clostridium perfringens D str. JGS1721] gi|177907288|gb|EDT70020.1| transcriptional regulator, Cro/CI family [Clostridium perfringens D str. JGS1721] Length = 78 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ RR + ++L + G+ + + E G+N+ + L +S I Sbjct: 16 IGENIKKRRQRKKWTLKQLSKKSGVGIKTIHDIESGINKPTKNTLYKLSRGFGITIDEL 74 >gi|163814881|ref|ZP_02206269.1| hypothetical protein COPEUT_01032 [Coprococcus eutactus ATCC 27759] gi|158449820|gb|EDP26815.1| hypothetical protein COPEUT_01032 [Coprococcus eutactus ATCC 27759] Length = 136 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R SQ+ + + L + +YE+ + + L +++++ + + Sbjct: 14 QRIRGLREDHDYSQKYVADYLCTSQTMYARYERDASAMPIRHLIYLAKLYNVSTDYILGL 73 Query: 77 SP 78 + Sbjct: 74 TD 75 >gi|153933321|ref|YP_001384546.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935529|ref|YP_001388062.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] gi|152929365|gb|ABS34865.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931443|gb|ABS36942.1| putative DNA-binding protein [Clostridium botulinum A str. Hall] Length = 78 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +++ R LG++QE+LGE +G++ Q + E I++V I F F Sbjct: 3 NKLKQFRENLGLTQEQLGELVGVSRQAINAIETEKFEPSIWLAYDIAKVFHDTIEEVFLF 62 Query: 75 DVSPTVCSDISS 86 + S S Sbjct: 63 EESERKSRSEKS 74 >gi|119486551|ref|ZP_01620601.1| transcriptional regulator [Lyngbya sp. PCC 8106] gi|119456168|gb|EAW37300.1| transcriptional regulator [Lyngbya sp. PCC 8106] Length = 401 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 12/137 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N + N +G+ ++ R GM+Q + + + EKG R+ A+ L Sbjct: 1 MTANNVLDNIDPRKLGELLQQAREKCGMTQADAAKVIDAARTTMVAIEKGRRRLKATELI 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ +S F + + + + QI V Q++ Sbjct: 61 KLARAYGRSVSDFV-----RPRPVVQPFEVQFRRLQSSQAEE-----AQITP--VIQRLE 108 Query: 121 ELVRSIVSSEKKYRTIE 137 EL R+ + E+ + Sbjct: 109 ELCRNYLELEEIMQAPL 125 >gi|126698982|ref|YP_001087879.1| putative phage regulatory protein [Clostridium difficile 630] gi|255306343|ref|ZP_05350514.1| putative phage regulatory protein [Clostridium difficile ATCC 43255] gi|115250419|emb|CAJ68241.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 132 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 4/110 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R ++Q KL + L + KYE G + L I++ + Sbjct: 4 LGKRIAYLRNSKKLTQRKLMDILKFEN--LGKYETGDRKPNCDILMSIADYFNVTTDWLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK--IIEL 122 V + S +E+ T D + + + Q+++ + I+EL Sbjct: 62 YGKEKVNVNSSVKEDKEDYLHVTNDEMTILNLYRQLNERDKIKIEGILEL 111 >gi|84623394|ref|YP_450766.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367334|dbj|BAE68492.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 461 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 10/134 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R G++Q +L L ++ + + E+ + + Q + L Sbjct: 11 QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRPLTLAIQQRLKATLGD----- 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVRSIVSSE 130 + + D + +D G L ++ +V Q +++L R+ Sbjct: 66 --LDGLLDLDDPAALVEPLDQSLRSLGHTLLPAELRALTGNMPQVAQALLDLHRAHQHLL 123 Query: 131 KKYRTIEEECMVEQ 144 ++ +E + VE Sbjct: 124 ERNAALELQIGVEH 137 >gi|89101060|ref|ZP_01173900.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89084233|gb|EAR63394.1| probable transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 71 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R G SQ++L LG++ Q + EKG I++ ++ I F Sbjct: 3 NNLAELRKKHGFSQDRLAVRLGVSRQTIISIEKGKYSPSLPLAFQIAKTFDTTIEHIFIY 62 Query: 77 SPTV 80 Sbjct: 63 EEET 66 >gi|219668525|ref|YP_002458960.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219538785|gb|ACL20524.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 69 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R L MSQE+L +G+T Q + E G I + L ++ F Sbjct: 5 RLKAARAGLDMSQEQLAIAVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLNDLFWED 64 Query: 78 P 78 Sbjct: 65 D 65 >gi|329928143|ref|ZP_08282089.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|328938020|gb|EGG34419.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 185 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 37/79 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+++ + ++L R +S +K+ E GI+ + + E+G + + + I+ L+ Sbjct: 3 PINLILANNLKLLREQRKLSLDKVAEMTGISKTMLGQIERGESSPSITTVWKIANGLKLS 62 Query: 70 ISFFFDVSPTVCSDISSEE 88 S + + +S EE Sbjct: 63 FSSLINEPHSGTVVVSREE 81 >gi|312888017|ref|ZP_07747601.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311299498|gb|EFQ76583.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 242 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 37/117 (31%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I + +I+ RR ++ L ++ + + E L I L Sbjct: 50 MEEDILIQISNKIKERRREKNITVHDLAIKANVSKGLISQIENSRTIPSLIVLIDIIRSL 109 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + ++ FF + S + Y+ +I ++ ++ V Sbjct: 110 DIDLNVFFKDIHSKSSSTPIIVRRKEQYEHFEKEDAHGFYYQRIFTQHIKHSTVDFV 166 >gi|293397071|ref|ZP_06641345.1| XRE family transcriptional regulator [Serratia odorifera DSM 4582] gi|291420542|gb|EFE93797.1| XRE family transcriptional regulator [Serratia odorifera DSM 4582] Length = 189 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 31/85 (36%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +D + +R+ R G S E L + GI+ + + E+ AS L + Sbjct: 6 NDIDQRLAQRLVALRQQRGWSLEALAQQTGISRATLSRIERMETSPTASLLNTLCAAYGL 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMD 93 +S ++ S + + Sbjct: 66 TMSRLLSELDNEPPELLSRQQQPVW 90 >gi|317131063|ref|YP_004090377.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315469042|gb|ADU25646.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 72 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 KRIR R +SQ ++ E L + + YE+G + L +++ ++ + Sbjct: 3 KRIRDLREDKSLSQTRMAEILHCSQRVYSNYERGEVDIPTGILIRLADFHQTSTDYLL 60 >gi|237739116|ref|ZP_04569597.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229423716|gb|EEO38763.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 187 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 5/98 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K N VG I+ R + +++ GI+ + + EKG + ++ Sbjct: 1 MEMNKEVN-----VGMTIKNIRKSKKLLLKEVASKCGISSSMLSQIEKGNANPSLNTIKS 55 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 I++VLE P+ FF S + + N IST Sbjct: 56 IAQVLEVPLFKFFIDSDKEKYEFHLLKKNERKIISTEY 93 >gi|262194471|ref|YP_003265680.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262077818|gb|ACY13787.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 79 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 26/71 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++QE+ E L I + E+G S L+ ++ + Sbjct: 9 IGNAVRDGRKAFGLTQEQAAERLDICVDYYGRVERGAAIPSVSMLRRLAVAFGLDGNVLL 68 Query: 75 DVSPTVCSDIS 85 + + Sbjct: 69 GLGDADLDTSA 79 >gi|227545776|ref|ZP_03975825.1| possible transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213892|gb|EEI81731.1| possible transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 362 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 40/119 (33%), Gaps = 3/119 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R ++QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + + +S + S L + I EL + I ++ R Sbjct: 65 DVSRPAASASTAGSSNVDSSAETASPLA---ASSKTAGIIAPIAELAQDITGYDEHRRR 120 >gi|209883861|ref|YP_002287718.1| DNA-binding protein [Oligotropha carboxidovorans OM5] gi|209872057|gb|ACI91853.1| DNA-binding protein [Oligotropha carboxidovorans OM5] Length = 208 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 39/93 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR R + + + L +G+T + K E G L +++ L + ++ Sbjct: 20 LGRRIRQLRKMQERTLDSLATEIGLTKGYLSKVETGRQTPPLGTLSKLAKALGTDLAGLV 79 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + P ++ E +V+ + ++ F Sbjct: 80 EHGPVEPAEQDFEGVSVVRADERRNVVRGATSF 112 >gi|254197120|ref|ZP_04903543.1| irep [Burkholderia pseudomallei S13] gi|169653862|gb|EDS86555.1| irep [Burkholderia pseudomallei S13] Length = 106 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 6/98 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G+SQEKLG G+ + +YE+G + + + I++ L+ PISFF Sbjct: 7 RLKQARKAAGLSQEKLGVLAGVDEMSASARMNQYERGKHEPDFAMVNRIAQALQLPISFF 66 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S T + ++ L+ ID Sbjct: 67 Y--SETDAEAKLIAAFHRLEPSQKTMLLEQALAMAGID 102 >gi|157149688|ref|YP_001449888.1| transcription regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157074482|gb|ABV09165.1| transcription regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 71 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 28/70 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R MSQ +L + +G++ Q + E ++++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLAKTLDTDLNALFWD 61 Query: 77 SPTVCSDISS 86 D Sbjct: 62 PQLTDEDSDD 71 >gi|153812908|ref|ZP_01965576.1| hypothetical protein RUMOBE_03315 [Ruminococcus obeum ATCC 29174] gi|149830986|gb|EDM86076.1| hypothetical protein RUMOBE_03315 [Ruminococcus obeum ATCC 29174] Length = 119 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 27/77 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R ++Q +L L ++ + + YE L + + I + + Sbjct: 11 NRIRELREEKKITQIRLSIELEVSQETISAYEMEKYYPSVKSLIKLQNIFGVSIDYILGL 70 Query: 77 SPTVCSDISSEENNVMD 93 S T I + + Sbjct: 71 SDTRYERIETNSLAQDE 87 >gi|83648921|ref|YP_437356.1| Zn peptidase [Hahella chejuensis KCTC 2396] gi|83636964|gb|ABC32931.1| predicted Zn peptidase [Hahella chejuensis KCTC 2396] Length = 387 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 34/86 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R L R G+++ L + +G+T + + YE G + ++ I+ L P+ FFF Sbjct: 6 RFALARKRRGLTKRALAKEVGVTDRSITAYESGQTVPESQTVEKIASALRFPVEFFFADD 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQL 103 + + + + L Sbjct: 66 VEELPVEVASFRALTKMTAAQRDIAL 91 >gi|125974946|ref|YP_001038856.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|125715171|gb|ABN53663.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] Length = 79 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V V + I+ +R L ++Q++L + +G+ + K E G R + + I+++L Sbjct: 6 VASEVRELIKEKRAALNLTQKQLADLVGVDRTTISKIENG-IRPSVNSAKKIAQILGLDW 64 Query: 71 SFFFDVSPTVCSDIS 85 + FFD ++ + Sbjct: 65 TIFFDSDEEHQTETA 79 >gi|47569775|ref|ZP_00240447.1| transcription regulator PlcR, probable, putative [Bacillus cereus G9241] gi|34452031|gb|AAQ72482.1| transcriptional regulator PlcR [Bacillus cereus] gi|37650522|emb|CAE47450.1| PlcR protein [Bacillus thuringiensis serovar roskildiensis] gi|47553571|gb|EAL11950.1| transcription regulator PlcR, probable, putative [Bacillus cereus G9241] Length = 287 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 3/105 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +V + + + +S Q + + + ++K Sbjct: 65 EVLVYSDIERKKLFKDRIQMLSKKK--QYAEIYNIVSNELKKEKF 107 >gi|325662739|ref|ZP_08151333.1| hypothetical protein HMPREF0490_02073 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470976|gb|EGC74204.1| hypothetical protein HMPREF0490_02073 [Lachnospiraceae bacterium 4_1_37FAA] Length = 242 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 24/65 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ R+ ++QE+ G++ Q V +E + + I + Sbjct: 1 MTIAEMIKKTRVDNHLTQEEYANKFGVSRQTVSSWENEKSIPDLQLIITICNTYNLSLDS 60 Query: 73 FFDVS 77 + Sbjct: 61 LLNAD 65 >gi|319783030|ref|YP_004142506.1| cupin [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168918|gb|ADV12456.1| Cupin 2 conserved barrel domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 187 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 8/125 (6%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R G++ ++G LG + V + E+G++ L+ +E+ PIS FF Sbjct: 13 IRALRKARGLTLAEIGLKLGRSVGWVSQVERGLSTPSLGDLRAFAELFGVPISLFFSHDV 72 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI----VSSEKKYR 134 V S+ L + + E+VRS+ + + + Sbjct: 73 PVESERGVVVRAGRRRTLGTSESGLVEE---LLSPDLGGS-FEMVRSVFAPGAELKAEAQ 128 Query: 135 TIEEE 139 EE Sbjct: 129 RPTEE 133 >gi|302330170|gb|ADL20364.1| Putative DNA-binding protein [Corynebacterium pseudotuberculosis 1002] Length = 155 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN------RVGASRLQHISEVLESPIS 71 R+R R + G+SQ++L E ++ Q+ E+ N S + ++ L P + Sbjct: 28 RLRTLRKMRGLSQDRLAELSDVSRNQISNLERNENSVTKSADPTMSTVYRLARALHVPPA 87 Query: 72 FFFDVSPTVCSDISSE 87 + + DI + Sbjct: 88 VLLPAATDIVQDICKD 103 >gi|302205618|gb|ADL09960.1| Putative DNA-binding protein [Corynebacterium pseudotuberculosis C231] gi|308275853|gb|ADO25752.1| Putative DNA-binding protein [Corynebacterium pseudotuberculosis I19] Length = 158 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN------RVGASRLQHISEVLESPIS 71 R+R R + G+SQ++L E ++ Q+ E+ N S + ++ L P + Sbjct: 31 RLRTLRKMRGLSQDRLAELSDVSRNQISNLERNENSVTKSADPTMSTVYRLARALHVPPA 90 Query: 72 FFFDVSPTVCSDISSE 87 + + DI + Sbjct: 91 VLLPAATDIVQDICKD 106 >gi|300857891|ref|YP_003782874.1| HTH_3 family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|300685345|gb|ADK28267.1| HTH_3-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] Length = 145 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN------RVGASRLQHISEVLESPIS 71 R+R R + G+SQ++L E ++ Q+ E+ N S + ++ L P + Sbjct: 18 RLRTLRKMRGLSQDRLAELSDVSRNQISNLERNENSVTKSADPTMSTVYRLARALHVPPA 77 Query: 72 FFFDVSPTVCSDISSE 87 + + DI + Sbjct: 78 VLLPAATDIVQDICKD 93 >gi|293980676|ref|YP_003543434.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292677693|dbj|BAI99208.1| Xre-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 77 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 28/62 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+ R RR+ L MSQ +L E G+T + + E G L I+ L + Sbjct: 14 MLVGRNCRERRVQLEMSQTELSERSGVTASYLSRIENGRGNPTLELLDSIAGALGCHVVD 73 Query: 73 FF 74 F Sbjct: 74 LF 75 >gi|291530482|emb|CBK96067.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 209 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ ++ + QL + +D + ++ +++ Sbjct: 70 KGETDEYETDITDKKELQIRDAMGDILKQLPLDLSKKEDAFSKDLLLLMLKQ 121 >gi|260220717|emb|CBA28555.1| hypothetical protein Csp_A07760 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 210 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 35/101 (34%), Gaps = 14/101 (13%) Query: 1 MVGNKKIPNPVDIN--------------VGKRIRLRRMILGMSQEKLGECLGITFQQVQK 46 M +P +D+ VG +++ R +S ++L + G++ + + Sbjct: 1 MEQKSILPTNIDMAQVPHPTPLVDGPPAVGSKLQDARKAQQLSLDELSKRAGVSKSMLSE 60 Query: 47 YEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISSE 87 E+ L ++ L ++ + + + E Sbjct: 61 VERNQANPTVGVLWRLATALGISLTDLLSNTTADKATPTVE 101 >gi|258650681|ref|YP_003199837.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553906|gb|ACV76848.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 197 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 24/78 (30%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + VG R++ R ++ L GI+ + + E G + L Sbjct: 1 MDDRAAMIAAALEQVGPRLKRLRTQRQVTLTALAAATGISKSTLSRLETGQRKASLELLL 60 Query: 61 HISEVLESPISFFFDVSP 78 ++ P+ Sbjct: 61 PLAMAYNVPLDDLVGGPD 78 >gi|229030553|ref|ZP_04186588.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1271] gi|228730720|gb|EEL81665.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1271] Length = 440 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 3/99 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RIR RM G++Q +L + + + + E G + +S + +S+ LE + Sbjct: 18 MEIGERIRQVRMHKGLTQGELVSEI-CSVTYLSRIESGKIKPSSSFITKVSKKLEVKSDY 76 Query: 73 FFDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQ 109 + + + D T L L +++ Sbjct: 77 LINGNYEEIKFTIFKICNKYKKDKSITEADLSLLELYVR 115 >gi|228952164|ref|ZP_04114256.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229189879|ref|ZP_04316889.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] gi|228593553|gb|EEK51362.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] gi|228807518|gb|EEM54045.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 404 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 2/130 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I++ LE SF Sbjct: 4 LGEKIKTLRKEKKLTQTDL-AGSELTKSMLSQIENGKATPSMKTLQYIADKLECETSFLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + ++ + ++ +Q + L + V++ K + Sbjct: 63 EEDDVEIVGLIQQTEKLIKANKYDEVYEVLLPIVQKELPPTLNT-ARLYKQFVTAAAKMK 121 Query: 135 TIEEECMVEQ 144 E VE+ Sbjct: 122 DYNIEYYVEK 131 >gi|227811902|ref|YP_002811912.1| transcriptional regulator, HTH_3 family [Vibrio cholerae M66-2] gi|227011044|gb|ACP07255.1| transcriptional regulator, HTH_3 family [Vibrio cholerae M66-2] Length = 207 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q + L+ + F Sbjct: 28 LGQRIKDIRTRLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKFAHGLQIEMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|220908478|ref|YP_002483789.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865089|gb|ACL45428.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7425] Length = 158 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEV 65 PNP D + + IR R+ LG+SQ+++ + GI Q + K E+G R+ + ++ Sbjct: 9 APNP-DETLAQYIRRIRLSLGLSQKEVADKAGIHLQSLGKIERGHTTRLNQKPKRGLAYA 67 Query: 66 LESPISFF 73 L PI + Sbjct: 68 LGLPIEYL 75 >gi|158314594|ref|YP_001507102.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158109999|gb|ABW12196.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 171 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 5/138 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQ--VQKYEKGVNRVGASR 58 M + VG R+R R G S +++ ++ V YE+G V Sbjct: 3 MTSENR---AYAREVGARLRAIRTQQGRSLQQVEALSYGRWKTAAVGSYERGDRMVSVEN 59 Query: 59 LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 L ++ P++ + + + T + + R++ Sbjct: 60 LAALAAFYGVPVAELLPSARPDPLPPRTARVVLNLPALTAVPGEDAGPLRRWIAEIQRRR 119 Query: 119 IIELVRSIVSSEKKYRTI 136 R + E RT+ Sbjct: 120 HDYAGRVLSIREGDLRTL 137 >gi|108757425|ref|YP_634451.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108461305|gb|ABF86490.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 185 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + IR R G +Q +L G+ E G S L ++ L+ + Sbjct: 10 LARNIRSLRETRGATQAQLSRLAGVPRATWAHLESGAANPTLSVLHRVAAALQVSLEEL 68 >gi|134503|sp|P22753|SINR_BACLI RecName: Full=HTH-type transcriptional regulator sinR gi|551703|gb|AAA22439.1| flaD (sin) homologue; putative [Bacillus licheniformis] Length = 111 Score = 43.3 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 1/77 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R G S +L E G+ + E+ L+ +S VL+ + Sbjct: 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60 Query: 73 FFDVSPTVCSDISSEEN 89 + D + Sbjct: 61 LLNEKDETEYDGQLDSE 77 >gi|325697795|gb|EGD39679.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK160] gi|327466976|gb|EGF12490.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK330] Length = 170 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 9/114 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + F Sbjct: 9 GPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLFG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-----DVKVRQKIIELVR 124 S + + S E+N + ++ + I+ D + + ++ L R Sbjct: 69 TSKEIELEKSVLESNEY----SDKVSEILKAVKYIEHFLHTDGQYLEDLLYLTR 118 >gi|291543870|emb|CBL16979.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 194 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 42/110 (38%), Gaps = 8/110 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G IR R+ GM+Q L E LG++ + V K+E+G S L +S+ LE Sbjct: 7 GSLIRRLRLEQGMTQLALAERLGVSDKAVSKWERGCGAPDLSILPLLSQALEVDTDTLLR 66 Query: 76 VSPTVCSDISSEE--------NNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + + + + ++ ++ ++ ++ Sbjct: 67 GDLEANDLTNGNLKRMRFYLCPECGNLLISQENADISCCGRRLSPLEPQK 116 >gi|258515474|ref|YP_003191696.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779179|gb|ACV63073.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 255 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 47/116 (40%), Gaps = 1/116 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ R G +Q KL E G+T + + E+ + L+ +S VL +F Sbjct: 139 LGNKLKALREKQGYTQAKLAELAGVTAGLIGQIEQSKVQPSLKTLEKLSGVLGISACYFI 198 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 V I+ + + + P + + + K Q ++ ++ + S+ Sbjct: 199 MEPGAVEQIINMMTPELREMLLDPKVQSVLGLIANL-NEKELQFVLNFIQLLKRSD 253 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++IR R G + ++L ++F + + E+G + ++ ++ VL S + Sbjct: 5 GEQIRALREERGYTLQELARRANLSFSYLSEIERGSKKPSLKTIEKLAAVLNVAKSQLVE 64 Query: 76 VS 77 Sbjct: 65 ND 66 Score = 40.2 bits (92), Expect = 0.095, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 33/72 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR+ R +S ++L I+ + + E+G + L+ ISE L+ S Sbjct: 74 LGNKIRMLRNEKALSLQELSTTSEISLSYLSEIERGTIYPSLNTLKKISESLDVSASVLM 133 Query: 75 DVSPTVCSDISS 86 ++ + + + Sbjct: 134 SYEGSLGNKLKA 145 >gi|228988577|ref|ZP_04148664.1| hypothetical protein bthur0001_52320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771194|gb|EEM19673.1| hypothetical protein bthur0001_52320 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 285 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 3/105 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R++ G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGSEIKKIRVMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +V + + + +S Q + + + ++K Sbjct: 65 EVLVYSDIERKKLFKDRIQMLSKKK--QYAEIYNIVSNELKKEKF 107 >gi|254976735|ref|ZP_05273207.1| putative phage DNA-binding protein [Clostridium difficile QCD-66c26] gi|255094119|ref|ZP_05323597.1| putative phage DNA-binding protein [Clostridium difficile CIP 107932] gi|255315870|ref|ZP_05357453.1| putative phage DNA-binding protein [Clostridium difficile QCD-76w55] gi|255518531|ref|ZP_05386207.1| putative phage DNA-binding protein [Clostridium difficile QCD-97b34] gi|255651650|ref|ZP_05398552.1| putative phage DNA-binding protein [Clostridium difficile QCD-37x79] Length = 254 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 2/130 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES--PI 70 + +GK ++ R ++Q +L E GI+ + YE L +++ L+ I Sbjct: 1 MQIGKNLKKIRKQKELTQIQLAEISGISRNALINYENDKRIPSIDTLSKLAKALKIEKTI 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 +F + + ++ + + + + + L+ S + Sbjct: 61 FYFDIENEVMTNEDVLYFLQSLFPEEYYSFDEFLNAISNLMEDDDIRITSSLLLGAWSDK 120 Query: 131 KKYRTIEEEC 140 +Y + E+ Sbjct: 121 DQYYKLGEKL 130 >gi|168204638|ref|ZP_02630643.1| cI2009 [Clostridium perfringens E str. JGS1987] gi|170663751|gb|EDT16434.1| cI2009 [Clostridium perfringens E str. JGS1987] Length = 78 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG I+ RR+ G S ++L + G+ + + E G+N+ + L +S I Sbjct: 16 VGTNIKRRRLKKGWSLKQLSKKSGVGIKTINDIELGINKPSKNTLYKLSRTFGITIDKL 74 >gi|160942296|ref|ZP_02089605.1| hypothetical protein CLOBOL_07182 [Clostridium bolteae ATCC BAA-613] gi|158434853|gb|EDP12620.1| hypothetical protein CLOBOL_07182 [Clostridium bolteae ATCC BAA-613] Length = 120 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 1/110 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + +G RIR +R LG S+E+L E I+ + E+G + L Sbjct: 1 MKRGEHMTEHNAKEIGLRIRRQREALGYSRERLAELSEISNSFLSDIERGDRGFSVALLG 60 Query: 61 HISEVLESPISF-FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +S VL + F ++ + +D P +L +++ Sbjct: 61 RLSRVLGLSADYILFGTEQATDISDITDMLSGLDGKYIPKLKELLGAYLK 110 >gi|92113766|ref|YP_573694.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796856|gb|ABE58995.1| transcriptional regulator, XRE family [Chromohalobacter salexigens DSM 3043] Length = 186 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 47/132 (35%), Gaps = 7/132 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ ++ R G S ++ G++ + + E+G + + L I+ S F Sbjct: 7 HIAATLKTLRGAQGWSLDRAARATGVSKAMLGQIERGESSPTVATLWKIAGGFRVSFSLF 66 Query: 74 FDVSP-TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F+ + V++ + + F D ++R ++ L+ + Sbjct: 67 FEQASVQGIVPNGEAAPTVLEDAAAGMTVTPLFAF----DPRLRFEMF-LIE-LAPGACS 120 Query: 133 YRTIEEECMVEQ 144 + E +VE Sbjct: 121 ESSPHEPGVVEH 132 >gi|148545072|ref|YP_001272442.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|227364226|ref|ZP_03848322.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325683429|ref|ZP_08162945.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|148532106|gb|ABQ84105.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] gi|227070771|gb|EEI09098.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324977779|gb|EGC14730.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 63 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R R +SQ +L + +G+ Q + E +++ L + ++ F Sbjct: 2 NNVRKYRKQQKLSQLELAKEIGVARQTINLIENDKYNPTLGLCLNLAHALHTDLNSLFWE 61 Query: 77 SP 78 P Sbjct: 62 EP 63 >gi|330815084|ref|YP_004358789.1| hypothetical protein bgla_1g01320 [Burkholderia gladioli BSR3] gi|327367477|gb|AEA58833.1| hypothetical protein bgla_1g01320 [Burkholderia gladioli BSR3] Length = 157 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKR+R RM LG+SQ + G+ + YE V+ A L + + I + Sbjct: 4 VGKRLRGERMRLGLSQPEFAALGGLKHKTQLNYEADVSAPDARYLLAL-REVGVDIWYVL 62 Query: 75 DVSPTVCSDISSEEN 89 + + E + Sbjct: 63 TGEVSPAVLPADEGD 77 >gi|319442546|ref|ZP_07991702.1| putative regulatory protein [Corynebacterium variabile DSM 44702] Length = 104 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 6/78 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK + R+R+ R MS+ +L E +G+ Q V E+G + Sbjct: 1 MSPKKKAV------IHNRVRVLRAERDMSRAQLAELIGVNPQTVGALERGDHSPSLDLAF 54 Query: 61 HISEVLESPISFFFDVSP 78 I E+ P+ F +P Sbjct: 55 RICEIFSLPVEAVFSRTP 72 >gi|317501524|ref|ZP_07959721.1| hypothetical protein HMPREF1026_01665 [Lachnospiraceae bacterium 8_1_57FAA] gi|316897079|gb|EFV19153.1| hypothetical protein HMPREF1026_01665 [Lachnospiraceae bacterium 8_1_57FAA] Length = 211 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 4/91 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + K N +G+ I+ R M Q++L + +GI Q + K E+GVN L+ Sbjct: 1 MEHDTKKIN----FLGENIQTIRKHRKMKQQELADAIGINMQSLSKIERGVNYPTFDTLE 56 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNV 91 I +VLE + E N Sbjct: 57 KIMDVLEVTPNELLSGEWKFVQQAEKEVNQF 87 >gi|302870809|ref|YP_003839445.1| hypothetical protein COB47_0084 [Caldicellulosiruptor obsidiansis OB47] gi|302573668|gb|ADL41459.1| protein of unknown function DUF955 [Caldicellulosiruptor obsidiansis OB47] Length = 373 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 36/83 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I + ++L + +G+T Q + KY +G + + +L I+E P+ +F Sbjct: 7 IGNNILALMKKQNVKIKQLADLIGVTRQTMTKYLEGEVIIDSEKLFKIAEFFGKPLDYFL 66 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 + + + + IST Sbjct: 67 ENKHEEMAFLFRAHVLNKESIST 89 >gi|295107606|emb|CBL05149.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b] Length = 83 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 29/74 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+ I R +SQ++L I + + E G++ + ++L I++ L P Sbjct: 8 RQLGQHIVEMRKAQRISQKQLALMSDINKGYLSEIENGISNISVNKLFRIADALGVPPMD 67 Query: 73 FFDVSPTVCSDISS 86 F + Sbjct: 68 LFAGIEGEEEGDCA 81 >gi|295402355|ref|ZP_06812310.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|294975628|gb|EFG51251.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] Length = 67 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R+ G++Q+++ E L ++ Q ++ E G R A L ++++ IS FF Sbjct: 8 KALRVNSGLTQKEVAEYLNLSLTQYKRRENGKTRWYADELYRLAKLYNVDISVFF 62 >gi|268609938|ref|ZP_06143665.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 124 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 46/119 (38%), Gaps = 5/119 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R G++Q++L ++ + YE+G++ L+ ++ + Sbjct: 11 GSIISDLRKNFGLTQKQLAIAFNVSEATIAHYEQGISVPPNDMLKRYADFFHVSTDYIL- 69 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + ++ + +N+ + + + ++ R+ + + + +E+K + Sbjct: 70 ----GRNMLNKDYSNLNELLYENMKIADMVQYVLSYSKDKRRYLYNTIIMLNKTEEKLK 124 >gi|266619966|ref|ZP_06112901.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288868430|gb|EFD00729.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 113 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 28/66 (42%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +GKRI RR L M+QE L E IT Q V E G + + IS L Sbjct: 2 DDLLKEMGKRIHDRRKQLHMTQENLAELANITPQTVSTAELGQKAMRPDTIIKISAALGI 61 Query: 69 PISFFF 74 + Sbjct: 62 STDYLL 67 >gi|228928376|ref|ZP_04091417.1| hypothetical protein bthur0010_30750 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946950|ref|ZP_04109247.1| hypothetical protein bthur0007_30810 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228812682|gb|EEM59006.1| hypothetical protein bthur0007_30810 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228831423|gb|EEM77019.1| hypothetical protein bthur0010_30750 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 374 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R ++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKRITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 P + + + + + ++ + + + ++ I+ + Sbjct: 64 LISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMECRKIIKKYYSCFPLLIQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDTDRRIEILEEAM 141 >gi|228939741|ref|ZP_04102322.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972604|ref|ZP_04133208.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979211|ref|ZP_04139554.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228780568|gb|EEM28792.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228787145|gb|EEM35120.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819973|gb|EEM66017.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940335|gb|AEA16231.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 116 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 47/118 (39%), Gaps = 7/118 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R+ M+QE+ G+ + +T V K+E G ++ I++ P+++ + + Sbjct: 6 RIKQIRIDNKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFNVPVNYLYGEN 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S + + ++ + + ++++ + +++ K Sbjct: 66 KDDHSSDDKYKKF-------KEIMEWLEPLPKDKEDMALEQMLAIAQALSKHHNKTEK 116 >gi|229122159|ref|ZP_04251374.1| Transcriptional regulator [Bacillus cereus 95/8201] gi|228661285|gb|EEL16910.1| Transcriptional regulator [Bacillus cereus 95/8201] Length = 116 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 46/118 (38%), Gaps = 7/118 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R+ M+QE+ G+ + +T V K+E G ++ I++ P+++ + + Sbjct: 6 RIKQIRLEHKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFSVPVNYLYGEN 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 V D + E + + +++ + +++ KK Sbjct: 66 NEVNLDENKYEKFKEIMAW-------LEPLPKDKEDMALDQMLAIAQALNKHHKKMEK 116 >gi|255282154|ref|ZP_05346709.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255267102|gb|EET60307.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 180 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 46/118 (38%), Gaps = 4/118 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NV +RI+ R L ++Q++ GE +GI V E G N + I + Sbjct: 1 MNVNERIKKVRKTLELTQQEFGERIGIKRNSVALIENGRNT-SDQTIFAICREFNVREEW 59 Query: 73 FFDVSPT--VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + + + ++ + ++ + + F + + R I++ + + + Sbjct: 60 LREGTGEMFKAAPNTALDALAEEYGYSRRDYVVVEKFSNLSRRE-RDVILDFLADVAA 116 >gi|209694526|ref|YP_002262454.1| DNA methyltransferase [Aliivibrio salmonicida LFI1238] gi|208008477|emb|CAQ78645.1| DNA methyltransferase [Aliivibrio salmonicida LFI1238] Length = 70 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 30/59 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GK++R R + G+SQ+KL I V + E+G + ++ +++ LE ++ Sbjct: 9 GKKLREIRKVKGVSQDKLALIADIDRSYVGRIERGEVNITLEKVYKLADALECDVTELL 67 >gi|159905781|ref|YP_001549443.1| XRE family transcriptional regulator [Methanococcus maripaludis C6] gi|159887274|gb|ABX02211.1| transcriptional regulator, XRE family [Methanococcus maripaludis C6] Length = 184 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R + +S E++ + L I+ + Q YE+G + AS L I+ E + Sbjct: 6 KEIASRVRELRELSDISIEEMADHLKISPEIYQHYEEGTCDIPASVLYEIAHKFEVDMGL 65 Query: 73 FFDVSPTV 80 T Sbjct: 66 LLTGEETR 73 >gi|29376651|ref|NP_815805.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|307276074|ref|ZP_07557207.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX2134] gi|29344115|gb|AAO81875.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|306507404|gb|EFM76541.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX2134] gi|315575132|gb|EFU87323.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0309B] gi|315582559|gb|EFU94750.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0309A] Length = 119 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 47/115 (40%), Gaps = 3/115 (2%) Query: 17 KRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R++L R ++Q+ + LG+ YE+G A I++ + + + Sbjct: 4 ERLKLLRKSKPNLTQQDMANILGVAKTTYASYEQGKRTPDAELQNKIADYFDVSLDYLHG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 V ++ + ++N + +P+ L + + + ++I+ + I + Sbjct: 64 RD--VINNSNLDKNMNRNNELSPEQLTVAAHIDDDVSEEEMKEILSFIDYIKKRD 116 >gi|85707344|ref|ZP_01038427.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85668152|gb|EAQ23030.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 211 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 25/74 (33%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + ++G R++ R G + E + G+ + K E G L I+ + Sbjct: 21 HQLRADLGARMKSVRQACGYTLEVAAQRTGLALSTIHKIENGRVSPSYENLIKIARAYDI 80 Query: 69 PISFFFDVSPTVCS 82 + F Sbjct: 81 GMERLFSADHDATQ 94 >gi|323353576|ref|ZP_08088109.1| cro/CI family transcriptional regulator [Streptococcus sanguinis VMC66] gi|322121522|gb|EFX93285.1| cro/CI family transcriptional regulator [Streptococcus sanguinis VMC66] Length = 170 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 9/114 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + F Sbjct: 9 GPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLFG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-----DVKVRQKIIELVR 124 S + + S E+N + ++ + I+ D + + ++ L R Sbjct: 69 TSKEIELEKSVLESNEY----SDKVSEILKAVKYIEHFLHTDGQYLEDLLYLTR 118 >gi|319412023|emb|CBY91956.1| putative transcriptional regulator [Streptococcus pneumoniae] Length = 158 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++Q + +GI+ + +YE G + V + I + Sbjct: 1 MIGKNIKSLRKTHELTQPEFARIIGISRNSLSRYENGTSSVSTELIDIICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + E ++ + L+R + Sbjct: 61 VGEDKMLNPVEDYELTLKIEIVKERGANLLSRLYR 95 >gi|319651076|ref|ZP_08005210.1| hypothetical protein HMPREF1013_01821 [Bacillus sp. 2_A_57_CT2] gi|317397246|gb|EFV77950.1| hypothetical protein HMPREF1013_01821 [Bacillus sp. 2_A_57_CT2] Length = 117 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 36/80 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + VG IR R ++QE+L E G+ + + E+G + L+ I L+ Sbjct: 5 SNILKLVGSNIRELRKQKKLTQEELAELSGLQYSFLAGVERGERNITLQTLEKIIVGLKE 64 Query: 69 PISFFFDVSPTVCSDISSEE 88 S FD S ++ S +E Sbjct: 65 TPSRLFDFSKLDDNNFSKQE 84 >gi|269966652|ref|ZP_06180731.1| transcriptional regulator, HTH_3 family [Vibrio alginolyticus 40B] gi|269828719|gb|EEZ82974.1| transcriptional regulator, HTH_3 family [Vibrio alginolyticus 40B] Length = 232 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 33/77 (42%), Gaps = 3/77 (3%) Query: 2 VGNKKIPNPVDIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 + K + +I +G+RI+ R LG++ E+ + G+ + K E Sbjct: 37 MTLAKEQHDQNIEPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQA 96 Query: 59 LQHISEVLESPISFFFD 75 +Q ++ L+ + F+ Sbjct: 97 MQKLALGLQIDMPQLFE 113 >gi|229591296|ref|YP_002873415.1| putative transcriptional regulator [Pseudomonas fluorescens SBW25] gi|229363162|emb|CAY50204.1| putative transcriptional regulator [Pseudomonas fluorescens SBW25] Length = 191 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 3/107 (2%) Query: 5 KKIPN--PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 K+ P+ V +V + +R R +SQ L E G++ + + E G V S L + Sbjct: 7 KENPHRASVLQHVSQNVRRLRHAADLSQTALSEKSGVSRRMLVAIEAGEKNVSLSTLDRV 66 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +E L S +E + + L L + + Sbjct: 67 AEALNVAFSDLIQAPDAPDHSRINELAWAGEIPGSKAVL-LAKANAR 112 >gi|254454592|ref|ZP_05068029.1| DNA-binding protein [Octadecabacter antarcticus 238] gi|198268998|gb|EDY93268.1| DNA-binding protein [Octadecabacter antarcticus 238] Length = 189 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 1/108 (0%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P+P +G IR R G++ LG+ LG + + + E+ ++ + L+HI+ VL Sbjct: 4 APSPEIHTLGADIRALRKARGLTLSGLGKTLGRSVGWLSQVERDMSEPSITDLRHIASVL 63 Query: 67 ESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + +S F +P + + S P GL + D Sbjct: 64 DVSVSSLFRSAAPEHERGMIVRADARRPIGSRPAGLVEELLSPDLTDD 111 >gi|152974255|ref|YP_001373772.1| helix-turn-helix domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023007|gb|ABS20777.1| helix-turn-helix domain protein [Bacillus cytotoxicus NVH 391-98] Length = 217 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 1/91 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 NP D +G +R +S +LG I + + G + LQ +E L Sbjct: 3 TENPNDK-LGALLRKLLKERNLSMRQLGTLTNIDPSTISRIISGKQQAKQKHLQKFAECL 61 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFIST 97 + P + + S I E+ ++ + I T Sbjct: 62 KVPPQLLYGALHSASSPIKKEKIDMYNSIDT 92 >gi|15595732|ref|NP_249226.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107099522|ref|ZP_01363440.1| hypothetical protein PaerPA_01000534 [Pseudomonas aeruginosa PACS2] gi|218889277|ref|YP_002438141.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254237245|ref|ZP_04930568.1| hypothetical protein PACG_03304 [Pseudomonas aeruginosa C3719] gi|254243628|ref|ZP_04936950.1| hypothetical protein PA2G_04453 [Pseudomonas aeruginosa 2192] gi|9946402|gb|AAG03924.1|AE004490_4 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126169176|gb|EAZ54687.1| hypothetical protein PACG_03304 [Pseudomonas aeruginosa C3719] gi|126197006|gb|EAZ61069.1| hypothetical protein PA2G_04453 [Pseudomonas aeruginosa 2192] gi|218769500|emb|CAW25260.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 184 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R R G++ + L + + + V + E+G++R L IS+VL P ++F Sbjct: 10 EIASLVRELRKRKGITLQALADGIRRSVGFVSQVERGLSRPAVDDLVAISQVLGVPATYF 69 Query: 74 F 74 F Sbjct: 70 F 70 >gi|331092567|ref|ZP_08341388.1| hypothetical protein HMPREF9477_02031 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400679|gb|EGG80285.1| hypothetical protein HMPREF9477_02031 [Lachnospiraceae bacterium 2_1_46FAA] Length = 232 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 39/99 (39%), Gaps = 1/99 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I+ R+ + +++ + + + KYEKG+ + A ++ +++ S Sbjct: 7 VGNNIKKYRIAHNYTLKEMSALIHKSCSTLSKYEKGIIPITADTIEEFAQIFHILPSQLL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 V I + ++ + DG + R I + Sbjct: 67 AVPYEDMLPIEKTDFISKHYMYSYDGKRK-RIMKSILEE 104 >gi|300723769|ref|YP_003713076.1| putative Cryptic phage CTXphi transcriptional repressor rstR [Xenorhabdus nematophila ATCC 19061] gi|300723780|ref|YP_003713087.1| putative Cryptic phage CTXphi transcriptional repressor rstR [Xenorhabdus nematophila ATCC 19061] gi|297630293|emb|CBJ90947.1| putative Cryptic phage CTXphi transcriptional repressor rstR [Xenorhabdus nematophila ATCC 19061] gi|297630304|emb|CBJ90958.1| putative Cryptic phage CTXphi transcriptional repressor rstR [Xenorhabdus nematophila ATCC 19061] Length = 123 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 12/82 (14%), Positives = 32/82 (39%), Gaps = 1/82 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FFDV 76 ++ R LG +Q+++ + +G+ Q ++YE G ++ + I+ L F+ Sbjct: 16 KLAASRKELGFTQQQMADKIGMHVSQYKRYEAGTSQPTIDVFRRIALALNVSADMLLFEP 75 Query: 77 SPTVCSDISSEENNVMDFISTP 98 + + + + Sbjct: 76 DERGPDERLKLQFEAISQLDEK 97 >gi|294992441|gb|ADF57361.1| hypothetical repressor protein [Roseburia inulinivorans DSM 16841] Length = 68 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 24/62 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R MSQE LG + T Q V K EK + L ++ + + Sbjct: 4 NRIRELRRSHNMSQEALGTIINTTQQAVSKMEKDTCAISTDLLISMARYFNVTTDYILGL 63 Query: 77 SP 78 S Sbjct: 64 SD 65 >gi|295101242|emb|CBK98787.1| transcriptional regulator, XRE family [Faecalibacterium prausnitzii L2-6] Length = 74 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 31/69 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R ++Q +L L + Q +YE+G+ + + L ++++ + + Sbjct: 5 RRIRDMREDHDLTQRQLAALLHMPQPQYNRYEQGLRDLPTTTLIALADIYHTSTDYLLGR 64 Query: 77 SPTVCSDIS 85 + +S Sbjct: 65 TNDPKPPVS 73 >gi|291539287|emb|CBL12398.1| Helix-turn-helix [Roseburia intestinalis XB6B4] Length = 209 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ ++ + QL + +D + ++ +++ Sbjct: 70 RGETDEYETDITDKKELQIRDAMGDILKQLPLDLSKKEDAFSKDLLLLMLKQ 121 >gi|284989260|ref|YP_003407814.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062505|gb|ADB73443.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 150 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQK-YEKGVNRVGASRLQHISEVLESPISFFF 74 G R+R R +G+++E+L L ++ + +E G+ R + ++ L Sbjct: 8 GDRLRAAREAVGLTREELATRLDLSSPARIRVWELGLERPRPRFIPRLAAALHVSPYHLL 67 Query: 75 DVSPTVCS 82 DV P Sbjct: 68 DVDPGDPP 75 >gi|217964458|ref|YP_002350136.1| conserved DNA-binding domain protein [Listeria monocytogenes HCC23] gi|290894427|ref|ZP_06557388.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|217333728|gb|ACK39522.1| conserved DNA-binding domain protein [Listeria monocytogenes HCC23] gi|290556014|gb|EFD89567.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|307570977|emb|CAR84156.1| conserved hypothetical protein [Listeria monocytogenes L99] Length = 309 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 6/116 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G +++ R G+S + L + I + + E+G V + +E + Sbjct: 3 ELGDKLKQARREKGLSLDDLQQVTKIQKRYLVAIEEGNYAVMPGKFYARAFIKQYAEAVG 62 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + FD + + +E + + R + +++ Sbjct: 63 LDSATLFDEFESEVPETPQQEVVNNEPTRVQSKRNPMPAQSVGNQGNARNRFFDIL 118 >gi|163853865|ref|YP_001641908.1| helix-turn-helix domain-containing protein [Methylobacterium extorquens PA1] gi|163665470|gb|ABY32837.1| helix-turn-helix domain protein [Methylobacterium extorquens PA1] Length = 209 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 32/91 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R +S +L E G+ + + E+ + + +S+ L+ I Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 85 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S + +S ++L Sbjct: 86 LATSDEEPFIERFSRADTPRLVSDDGKVRLA 116 >gi|154500872|ref|ZP_02038910.1| hypothetical protein BACCAP_04557 [Bacteroides capillosus ATCC 29799] gi|150270372|gb|EDM97698.1| hypothetical protein BACCAP_04557 [Bacteroides capillosus ATCC 29799] Length = 157 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G + R G+SQE + E LG++ Q + K+E + + ++ + + Sbjct: 9 MSLGSSLYHARKKSGLSQENVAEKLGVSRQTISKWETNETLPDIRQSKGLAMLYNMTLDE 68 Query: 73 FFDVSPTVCSD 83 + Sbjct: 69 LIEYDFDEQQA 79 >gi|39997211|ref|NP_953162.1| transcriptional regulator [Geobacter sulfurreducens PCA] gi|39984101|gb|AAR35489.1| transcriptional regulator, putative [Geobacter sulfurreducens PCA] Length = 143 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 44/110 (40%), Gaps = 10/110 (9%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ G+S +L + + + ++ G + A L ++ VL+S + Sbjct: 35 ERLKSLMADKGLSSAELADRADLARSALTQFFGGERKPSADALVKLANVLDSSTDYLLGR 94 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + ++L F ++ V +++++E++R + Sbjct: 95 RDSTDVAAL---------LQNDKIMELISLFSEL-SVADQERVLEMIRLM 134 >gi|152974571|ref|YP_001374088.1| helix-turn-helix domain-containing protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023323|gb|ABS21093.1| helix-turn-helix domain protein [Bacillus cytotoxicus NVH 391-98] Length = 69 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+RIRL R +SQE+LGE I + E+G V L I+ L + Sbjct: 5 KKLGERIRLLRKEQNLSQERLGELSNIHTNHIGAIERGEKNVTIESLAKITNGLGITLEE 64 Query: 73 FFDV 76 F Sbjct: 65 LFRD 68 >gi|324009974|gb|EGB79193.1| helix-turn-helix protein [Escherichia coli MS 57-2] Length = 116 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWLSSG 87 Query: 77 SPTVCSDISS 86 + Sbjct: 88 VGNMSDSTVQ 97 >gi|313116063|ref|ZP_07801487.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310621660|gb|EFQ05191.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 148 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 7/108 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + V+I + + I RM G +Q+ L + + + V ++E G L Sbjct: 20 MTTAELAKAVVNIQIQQMIHDTRMAKGWTQKDLADKMRVKQSLVSRWESGDCNYTIDTLI 79 Query: 61 HISEVLESPI-------SFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 I++ L + P ++ + L Sbjct: 80 DIADALGLSVQCPLKPDERIMSTEPENVKSDAANNTAFKTPDFSSSRL 127 >gi|295104999|emb|CBL02543.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 100 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 35/77 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+ R +Q+ L + LG+T V +E+G N + L I ++ + + Sbjct: 1 MLGERLAEIRKNYHDTQKSLADKLGLTVWAVSAWEQGRNSPPSDVLLAICKLYGTSADYL 60 Query: 74 FDVSPTVCSDISSEENN 90 ++ SD + ++ Sbjct: 61 LGLTDIDPSDEARKQRQ 77 >gi|254821249|ref|ZP_05226250.1| DNA-binding protein [Mycobacterium intracellulare ATCC 13950] Length = 116 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 31/83 (37%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P V +G +R R G + ++ + ++ + + E+G + L I + L Sbjct: 1 MPPLVREVIGDVLREARTAQGRTLREVSDSARVSLGYLSEVERGRKEPSSELLNAICDAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEEN 89 + P+S + + Sbjct: 61 DVPLSSVLTDAGERMAGQERAHE 83 >gi|239906602|ref|YP_002953343.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] gi|239796468|dbj|BAH75457.1| Xre family DNA-binding protein [Desulfovibrio magneticus RS-1] Length = 186 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 44/129 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R GM+ + L E G+T V YE G + S L +++ + ++ Sbjct: 9 REIAMRLRGLREATGMTAQALAEATGVTAADVAAYETGNKEIPVSYLYEVAKACGADLTA 68 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + S + + + + + I+ + S + Sbjct: 69 LLTGDDAHLMNYSLVPSGQGLSVDRRKAYKYQALAYRFHKPHMEPFIVTVPPKAESEMEF 128 Query: 133 YRTIEEECM 141 R + EE + Sbjct: 129 NRHLGEEFI 137 >gi|284990495|ref|YP_003409049.1| XRE family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063740|gb|ADB74678.1| transcriptional regulator, XRE family [Geodermatophilus obscurus DSM 43160] Length = 64 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 26/60 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R RM G+SQ L +G++ Q + E G ++ ++ + FDV+ Sbjct: 5 VRALRMQRGLSQGDLAVVMGVSRQTINSIETGRYLPSLPLAIGLARFFKTTVEEVFDVAE 64 >gi|284991561|ref|YP_003410115.1| helix-turn-helix domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284064806|gb|ADB75744.1| helix-turn-helix domain protein [Geodermatophilus obscurus DSM 43160] Length = 183 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 6/110 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISE 64 + +G R+R R G+S + + + ++ V YE+G V RL ++ Sbjct: 1 MSTDYSRALGARLRAIRNQQGLSLQGVEDKSHGRWKAVVVGSYERGDRAVTVQRLSELAV 60 Query: 65 VLESPISFFF-DVSPTVCSDISSEENNVMDFISTPDGLQ---LNRYFIQI 110 P+S D P+ +++ ++ + + + L RY I Sbjct: 61 FYGVPVSELLPDPRPSSAVTSTTKIVLNLESLGSLPADEAGPLARYASTI 110 >gi|254519524|ref|ZP_05131580.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] gi|226913273|gb|EEH98474.1| DNA-binding protein [Clostridium sp. 7_2_43FAA] Length = 349 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 3/120 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ RR+ G++QE++ E LG++ V K+EKG++ + L ++ +L ++ Sbjct: 1 MKINEIIKERRIDQGLTQEQVAEALGVSTPAVNKWEKGISYPDITILPALARLLRVDLNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQIDD-VKVRQKIIELVRSIVSS 129 V N + I G + + +I + + I+ + + S Sbjct: 61 LLSFKEDVTDIEIGHFINELVEIIRSSGFDIGFEKAMDKIHEYPNNDKLILNIATVLEGS 120 >gi|291326603|ref|ZP_06125112.2| MrfJ protein [Providencia rettgeri DSM 1131] gi|291313684|gb|EFE54137.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 121 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 35/74 (47%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K + VGK ++ R LG+S E + + LGI+ QQ+ +YE+G N + L Sbjct: 9 MKKKKDTTYYISQLVGKCLQEYRQELGISGENIAKELGISQQQLSRYERGENALTVDVLF 68 Query: 61 HISEVLESPISFFF 74 +L F+ Sbjct: 69 KFILILGINFPDFY 82 >gi|209551516|ref|YP_002283433.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537272|gb|ACI57207.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 125 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 43/113 (38%), Gaps = 6/113 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS--- 71 G+ IR R G+SQ+++ E L ++ + E G LQ I+ Sbjct: 5 GEAIRKLRARKGVSQKEMAEALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNIIWDEAE 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 F ++ + + + + + T +L R +D ++ ++ L+ Sbjct: 65 ELFLLARSSDPRVVIDTSGLP-PEYTEFANRLARRIRSLDSAEI-GRLSALLE 115 >gi|153954232|ref|YP_001394997.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219854837|ref|YP_002471959.1| hypothetical protein CKR_1494 [Clostridium kluyveri NBRC 12016] gi|146347113|gb|EDK33649.1| Transcriptional regulator [Clostridium kluyveri DSM 555] gi|219568561|dbj|BAH06545.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 226 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 13/133 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M NKK +G IR +S KL GI + + G + L+ Sbjct: 1 MYENKKKS-----ELGSMIRTLLKENSLSMRKLSSISGIDTATISRIVNGKQSANMNHLR 55 Query: 61 HISEVLESPISFFF--------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 +S+ L PI ++ D S N+ + + PD L +I++ Sbjct: 56 ILSKYLNVPIKKLLIADGYDMTSLTDEDSIDSPSLIKNIHELLKLPDLLNYKCDLSKIEE 115 Query: 113 VKVRQKIIELVRS 125 + K+ L Sbjct: 116 ELEKYKVYALTEE 128 >gi|288227164|gb|ADC45065.1| putative transcriptional regulator (helix-turn-helix motif, XRE-like) [Cupriavidus metallidurans CH34] Length = 101 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 2/92 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +NVG+ I+L R G+SQ L + + E S + I+ L P+ Sbjct: 1 MNVGQAIKLCRTRRGISQADLARQAECSVSYLSMLENNKRDPTLSTMTKIAHALHMPVGI 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + ++ D L+L Sbjct: 61 IFFLGAEGDDLTGIGKSLQGDLA--RTALELL 90 >gi|73669664|ref|YP_305679.1| transcriptional regulator [Methanosarcina barkeri str. Fusaro] gi|72396826|gb|AAZ71099.1| transcriptional regulator [Methanosarcina barkeri str. Fusaro] Length = 184 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 28/70 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R + + + + E L ++ + KYE G + AS L I+ L ++ Sbjct: 6 KEIADRVRELRELSDFTVKDMAEYLQVSNETYGKYEDGTADIPASMLFEIAHKLRVDMAT 65 Query: 73 FFDVSPTVCS 82 + Sbjct: 66 LLTGEEPRMN 75 >gi|86134485|ref|ZP_01053067.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] gi|85821348|gb|EAQ42495.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] Length = 258 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K I+ R + ++QE L E L +T ++ YE+ + L S+ + PI Sbjct: 6 KNIKHLRNLKKLTQEALAEELSVTRSRISSYEENRSSPTIEFLIDFSKYFKIPIDIIIKN 65 Query: 77 SPTVCSDIS 85 T +D+S Sbjct: 66 DLTKANDVS 74 >gi|115526032|ref|YP_782943.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115519979|gb|ABJ07963.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisA53] Length = 84 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 23/75 (30%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ R +QE+ E G T Q V E+G L H++ L Sbjct: 7 VGRNFARLRKEKDFTQERFAEVSGFTQQYVSGLERGKRNPTVVTLFHLAAALGVSHVDLI 66 Query: 75 DVSPTVCSDISSEEN 89 + S Sbjct: 67 QPDEEASGERSKAAR 81 >gi|223934040|ref|ZP_03625993.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223897297|gb|EEF63705.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 61 Score = 42.9 bits (99), Expect = 0.013, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 21/53 (39%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R ++Q++ G+ +G+T +EKG I+E I Sbjct: 1 MLRARDNLTQKQAGQLVGVTADTWANWEKGKTNPDVKTAYKIAENFGLSIDDI 53 >gi|325262607|ref|ZP_08129344.1| DNA-binding protein [Clostridium sp. D5] gi|324032439|gb|EGB93717.1| DNA-binding protein [Clostridium sp. D5] Length = 365 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 40/94 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR +R +G++QE+L LG++ V K+EKG++ + L ++ + Sbjct: 1 MKIHEMIRCKRKEMGLTQEELARYLGVSAPAVNKWEKGLSYPDITLLPVLAAYFNLSVDD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 P + + + + + + + Sbjct: 61 LIGYEPQMVKEDIKKLYRRLADRFEKEPFETVKA 94 >gi|323140461|ref|ZP_08075389.1| restriction-modification system control element Bcll family protein [Phascolarctobacterium sp. YIT 12067] gi|322415029|gb|EFY05820.1| restriction-modification system control element Bcll family protein [Phascolarctobacterium sp. YIT 12067] Length = 104 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 2/105 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ N + + +GKR++++R+ +SQ +L + LG+T + E G + L Sbjct: 1 MMMN--MTEEYNRLIGKRVKMQRISAKVSQTELAKELGVTQTHLSNIENGRAGLTIPNLI 58 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + ++LE PIS FF +S + + + + L+ R Sbjct: 59 KLHQILECPISSFFVDIEWEKEADNSSDITLENVMELARLLKKAR 103 >gi|270290740|ref|ZP_06196964.1| XRE family DNA-binding protein [Pediococcus acidilactici 7_4] gi|270280800|gb|EFA26634.1| XRE family DNA-binding protein [Pediococcus acidilactici 7_4] Length = 108 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 31/76 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R + +Q L L ++ V YE+G++ L I +L++ + +S Sbjct: 16 RLKSARKLKHFTQLDLANRLDVSKGTVSAYEQGLSYPSLETLVKICNILDTSADYLLGIS 75 Query: 78 PTVCSDISSEENNVMD 93 + + + + Sbjct: 76 DDLTFKMGGLTDEQTE 91 >gi|227500718|ref|ZP_03930767.1| transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227217176|gb|EEI82525.1| transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 143 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 38/80 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R++ ++Q++L G+T ++ YE G +LQ ISE L+ IS D Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISALID 63 Query: 76 VSPTVCSDISSEENNVMDFI 95 P +I + + Sbjct: 64 HEPNSIFEIMHIIFDYEKDM 83 >gi|282599559|ref|ZP_05970999.2| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] gi|282568492|gb|EFB74027.1| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] Length = 233 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 2/85 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + +++ KR+ R+ GMSQ L E +G++ Q +QK E G R+ I++ + Sbjct: 4 ITMSIAKRLLDARIKAGMSQADLAEKVGVSQQSIQKIEAGQTN-SPRRISDIAKAVNVSA 62 Query: 71 SFF-FDVSPTVCSDISSEENNVMDF 94 + F E D Sbjct: 63 QWLQFGTRDGNGLKTEFEVKEWEDI 87 >gi|255280060|ref|ZP_05344615.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255269151|gb|EET62356.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 74 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KRIR R ++Q K+ E L I+ + +YE + + L I+++ I + + Sbjct: 5 KRIRDLREDSDITQTKMAEKLNISQRTYSRYENADSLMPLDILVQIADIHGVSIDYLLER 64 Query: 77 SP 78 + Sbjct: 65 TD 66 >gi|240145278|ref|ZP_04743879.1| putative transcriptional regulator [Roseburia intestinalis L1-82] gi|253578072|ref|ZP_04855344.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850390|gb|EES78348.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] gi|257202633|gb|EEV00918.1| putative transcriptional regulator [Roseburia intestinalis L1-82] Length = 119 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 12/88 (13%), Positives = 34/88 (38%), Gaps = 1/88 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FF 73 +G+ I+ R GM++++L + + +Q E + + + + + Sbjct: 15 IGQAIKKARTAKGMTRDELSRIVDYDPRHLQAIENEGQKPSLELFIQLVTMFGVSVDEYI 74 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 F + S + + +D ++ + L Sbjct: 75 FPDNEVKKSSVRRRLDAELDKLNDKELL 102 >gi|157690974|ref|YP_001485436.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157679732|gb|ABV60876.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 71 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 26/71 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + RI++ R +Q+ L E LG+T Q V E G + I+ E + Sbjct: 1 MEIKNRIKVLRAERDWTQKDLAEKLGVTRQTVAAIENGKYSLSLKLAFQIARTFEVDLYD 60 Query: 73 FFDVSPTVCSD 83 F Sbjct: 61 VFQEVDKEEQQ 71 >gi|116251937|ref|YP_767775.1| helix-turn-helix transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256585|emb|CAK07672.1| putative helix-turn-helix transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 108 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 2/103 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GKRI+ R GM+ + L G + + K R A +L I+ VLE + Sbjct: 7 GKRIKELRTKKGMTLDDLAGATGSSKSYIWELENKNPPRPSAEKLSEIAAVLEVTTDYLI 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 T + + R ++ ++ Sbjct: 67 -GRETTLETAEDKAFFREYSNMPQATREKIRAMARLLGSDAKE 108 >gi|89055187|ref|YP_510638.1| XRE family transcriptional regulator [Jannaschia sp. CCS1] gi|88864736|gb|ABD55613.1| transcriptional regulator, XRE family [Jannaschia sp. CCS1] Length = 440 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 53/141 (37%), Gaps = 12/141 (8%) Query: 10 PVDINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR---------- 58 P D ++ G RIR RR+ +G+ Q L E +G++ + E ++G Sbjct: 7 PPDDHLTGSRIRERRLAMGLKQGVLAEIVGVSPSYLNLIEHNHRKIGGKLLLALARALEV 66 Query: 59 -LQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 ++E +++ IS D + D+ +E V + ++ G + + Sbjct: 67 EASALTEGVDAGISELLDAAARALGDVPAETARVDELVARFPGWTALIAAQETRARNLEA 126 Query: 118 KIIELVRSIVSSEKKYRTIEE 138 +I L + + E Sbjct: 127 QIEALRDRLAHDPALAEAMHE 147 >gi|56692586|ref|YP_164054.1| transcriptional regulator [Pseudomonas phage B3] gi|53828913|gb|AAQ13936.1|AF232233_18 transcriptional regulator [Pseudomonas phage B3] Length = 136 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 11/107 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R LG +Q + E +G + + +E+G A L + + F Sbjct: 6 LGERLRAERERLGYTQTEFAEIVGASKRTQIGWEQGRTAPDALALAAWANE-GLNVEFVV 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + P QL + R++++ Sbjct: 65 SGKRSDRPAGPEL----------PPDEQLLLEVYRAMSAAKRKELLA 101 >gi|307325149|ref|ZP_07604353.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306889295|gb|EFN20277.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 509 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +GK IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MTDDYLSRIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|282849936|ref|ZP_06259319.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella parvula ATCC 17745] gi|282580373|gb|EFB85773.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella parvula ATCC 17745] Length = 153 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 5/119 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K ++ R+ +G SQ ++ + +GI+ + YE G L +S + DV Sbjct: 5 KNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDELLDV 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + E + + + ++ D + R + EL EK Sbjct: 65 NGEQ-----HEPIYDLSPVLKNKYIAYKGEVFELKDSQKRALLHELDNLFTKFEKSKVE 118 >gi|302541927|ref|ZP_07294269.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302459545|gb|EFL22638.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 509 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +GK IR R G +Q +L E LG + V + E+G + + I E L Sbjct: 1 MTDDYLSRIGKLIRDARQHRGWTQSQLAEALGTSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|253690483|ref|YP_003019673.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757061|gb|ACT15137.1| transcriptional regulator, XRE family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 111 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 51/112 (45%), Gaps = 25/112 (22%) Query: 17 KRIRLRRMILGMSQEKLGECL----GITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R+ G+SQ+KLG + ++ +YEKGV+ Q ++E L+ P+++ Sbjct: 13 QRLKQARLAKGLSQKKLGIAAGIDEFVASTRINRYEKGVHEASIETAQQLAEALDVPLAY 72 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 F+ + + ++ F+ + + R +++ LV+ Sbjct: 73 FYTENDELA--------------------EMMLAFLAL-SPEKRAEVLALVK 103 >gi|228920493|ref|ZP_04083838.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839123|gb|EEM84419.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 404 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I+E LE +SF Sbjct: 4 LGEKIKALRKEKKLTQTAL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLECEMSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDEGEIVELIQ 74 >gi|256830616|ref|YP_003159344.1| helix-turn-helix domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256579792|gb|ACU90928.1| helix-turn-helix domain protein [Desulfomicrobium baculatum DSM 4028] Length = 355 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 50/139 (35%), Gaps = 13/139 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ R +S L E +G++ + K+EK + L + +VL +F Sbjct: 1 MIGERLQRARKAADLSLRNLAEQVGVSHTWINKFEKDQAMPDSKTLLKLGKVLGVRSEYF 60 Query: 74 FDVSPTVCSDIS-------------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 F S + + + ++D I L+ ++ ++ + Sbjct: 61 FRPEQVTLSQVEYRKKSTLPKKRLQAITHEILDHIERRMELEDLFPQPPVETFRLPAGLP 120 Query: 121 ELVRSIVSSEKKYRTIEEE 139 + V S E+ E Sbjct: 121 DRVESYSQIEEVANHTRRE 139 >gi|212709332|ref|ZP_03317460.1| hypothetical protein PROVALCAL_00367 [Providencia alcalifaciens DSM 30120] gi|212688244|gb|EEB47772.1| hypothetical protein PROVALCAL_00367 [Providencia alcalifaciens DSM 30120] Length = 99 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G IR R+ G+S+++L + ++ QQV +YE+GV+ + + + L P Sbjct: 3 LNKKIGNFIRNARVSKGLSEKELASLISVSQQQVSRYERGVSTLSIQNILILLNALNIPF 62 Query: 71 SFF 73 F Sbjct: 63 DEF 65 >gi|91784379|ref|YP_559585.1| anaerobic benzoate catabolism transcriptional regulator [Burkholderia xenovorans LB400] gi|91688333|gb|ABE31533.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia xenovorans LB400] Length = 327 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 3/124 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 G ++ +P +G+R+RL R GM+++ L G++ + + E GV L+ I Sbjct: 29 GEREERDPFLTAMGERVRLLRARRGMTRKTLATETGLSERHLANLESGVGNASVLVLRQI 88 Query: 63 SEVLESPISFFFDVSPTVCSD---ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + L ++ T ++ I + + L F Q R+ Sbjct: 89 AATLNCSLAEVIGDETTASAEWLLIRELLHGRDQAALQRARMALAEMFAQAPRDPHRKDR 148 Query: 120 IELV 123 I L+ Sbjct: 149 IALI 152 >gi|67078376|ref|YP_245994.1| prophage repressor protein [Bacillus cereus E33L] gi|66970682|gb|AAY60656.1| prophage repressor protein [Bacillus cereus E33L] Length = 114 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 28/72 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I+ R G+ QE E G + Q++ +E ++ ++ ++ + Sbjct: 4 LGQTIKYFRKKTGLIQEDFAEKYGFSHGQMKHWETDRHQPDVESIKTLASIFRISTDALL 63 Query: 75 DVSPTVCSDISS 86 + + S Sbjct: 64 NFENEQDDALLS 75 >gi|330875276|gb|EGH09425.1| transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965856|gb|EGH66116.1| transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 149 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-- 72 +G R++ R+ L +SQ LG G+ YE GV A L I++ +++ Sbjct: 4 IGPRLKKERLRLKISQSALGAIGGVETNAQGNYENGVRSPRADYLSRIAD-AGVNVTYVV 62 Query: 73 --FFDVSPTVCSDISSEENNVM 92 F D SPT+ + ++ + + Sbjct: 63 TGFSDYSPTLTAKATTSQESDP 84 >gi|325568077|ref|ZP_08144518.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325158278|gb|EGC70429.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 163 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 41/108 (37%), Gaps = 6/108 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R ++Q L E L ++ + + K+E G + I+E L+ + Sbjct: 9 KLKEYREKNKLTQSMLAELLEVSDKTISKWELGATYPSKKNMIKIAEELDISLETLLLEE 68 Query: 78 PTVCSDISSEE------NNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 +D + + F T N+ F I ++ +++K Sbjct: 69 TKKDNDDLKVSIKYGVISFCLLFFVTMIVTSFNQDFSTIMNLSIQEKF 116 >gi|320536515|ref|ZP_08036545.1| helix-turn-helix protein [Treponema phagedenis F0421] gi|320146641|gb|EFW38227.1| helix-turn-helix protein [Treponema phagedenis F0421] Length = 369 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 33/92 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R + + L LG+T V YEKG A ++E L PI FF+ Sbjct: 7 ARLTQARNWNNYTLDYLAGMLGVTKASVSLYEKGARNPDAFVQIRLAEALGFPIEFFYKP 66 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 S + S N +L + F Sbjct: 67 SFDTSNARISYRKNSSTKKKEKQRAELLKQFS 98 >gi|295108145|emb|CBL22098.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 140 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 39/105 (37%), Gaps = 6/105 (5%) Query: 1 MVGNKKIPNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M +++ D + +G ++ R G +Q + + +G T + + E + Sbjct: 1 MNQDERR---FDFHGLGLALKQAREEKGWTQAYVAKLVGKTDRTIMNIENKGQHPSFNLF 57 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + + + FF + + +V +S+ + +L Sbjct: 58 FKLVTLFDISVDQFFYTEGQRGENSCRKHIDV--LLSSMNEKELV 100 >gi|288924207|ref|ZP_06418242.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288344443|gb|EFC78937.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 208 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 29/80 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V + IRL R G+S +L G+ Q + K E+ L I+ L P++ Sbjct: 16 VARNIRLLRQQRGLSLAELARQAGLAKQTLSKLEQSSGNPTVDTLFSIASALGVPVTRLV 75 Query: 75 DVSPTVCSDISSEENNVMDF 94 + + + + Sbjct: 76 AEREQIVAVQRASDVVWQHH 95 >gi|256545793|ref|ZP_05473149.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] gi|256398489|gb|EEU12110.1| Xre family toxin-antitoxin system, antitoxin component [Anaerococcus vaginalis ATCC 51170] Length = 144 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +++ + RIR R +SQ KL + +G+ + + YE I +VL+ Sbjct: 77 DMEVEIENRIREFRKEKNLSQHKLAKLVGLKRRSIMAYENNTISPSLETAYKICKVLDKD 136 Query: 70 ISFFF 74 I F Sbjct: 137 IKEVF 141 >gi|254498006|ref|ZP_05110769.1| phage repressor [Legionella drancourtii LLAP12] gi|254352783|gb|EET11555.1| phage repressor [Legionella drancourtii LLAP12] Length = 227 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 46/110 (41%), Gaps = 3/110 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G+RI+ R I G++++ L E + ++ YE+G G ++ +++VLE Sbjct: 3 IKEKIGQRIKHERTIKGLTRKALAELTDSLKISRINNYERGERTPGPEEIKQLAKVLEVS 62 Query: 70 ISFFFDVSPTVCSDISSE--ENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 +F +S + ++ ++ +I + + + Sbjct: 63 PAFLMCLSDDKQGKLKKPLGLGALIPLLNYKQACDPAVCIQEIKNEQYSE 112 >gi|242279153|ref|YP_002991282.1| XRE family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242122047|gb|ACS79743.1| transcriptional regulator, XRE family [Desulfovibrio salexigens DSM 2638] Length = 230 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 14/119 (11%), Positives = 46/119 (38%), Gaps = 4/119 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPIS 71 +G+R++ R +S +L + + YE G+ + + S L ++ + +S Sbjct: 26 KQIGQRLKQARTEKKISIAELSRRTSLGTDTLTSYESGMLDSISCSSLYMLASEINVDLS 85 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + T N + ++ +++ + ++++ + + +S+ Sbjct: 86 WLISGNNT--FSFMHYMNQGYNIAGLKTEIENALNDVELPNSS-KKRLSNFLEQLHTSK 141 >gi|150400183|ref|YP_001323950.1| cupin 2 domain-containing protein [Methanococcus vannielii SB] gi|150012886|gb|ABR55338.1| Cupin 2 conserved barrel domain protein [Methanococcus vannielii SB] Length = 192 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 8/90 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + +G +I R GMS E L + + + ++ EKG + L Sbjct: 1 MTEKNQ--------LGSKITQLRESKGMSIEDLAKASDSSIELIECLEKGNLVPSLTPLL 52 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN 90 I+ L + F D +P I+ N Sbjct: 53 KIARALSVRLGTFLDDAPQNGPVITKSGNY 82 >gi|146302279|ref|YP_001196870.1| XRE family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156697|gb|ABQ07551.1| transcriptional regulator, XRE family [Flavobacterium johnsoniae UW101] Length = 76 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+G IR R G+SQ+ L + GI Q+ + E+ G L I+ L+ ++ Sbjct: 10 INLGTHIRKLREKRGLSQQDLADDCGIPRNQIGRIERAKINTGIKTLIRIANALDIELAD 69 Query: 73 FFD 75 Sbjct: 70 LLS 72 >gi|81427830|ref|YP_394829.1| XRE family DNA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|78609471|emb|CAI54517.1| Putative DNA-binding protein, XRE family [Lactobacillus sakei subsp. sakei 23K] Length = 185 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 38/87 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I+ R +S EKL E G++ + K E G + + L +++ LE+P+ F Sbjct: 12 GEQIKQLRQSKKISVEKLSELSGLSSLTITKIENGKSNPTINTLWKLTKCLEAPLMSLFK 71 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 + + ++ + ++ Sbjct: 72 NRGSNVVFSTENHGYFLEDENHKWEVE 98 >gi|23097662|ref|NP_691128.1| transcriptional repressor of PBSX genes [Oceanobacillus iheyensis HTE831] gi|22775885|dbj|BAC12163.1| transcriptional repressor of PBSX genes [Oceanobacillus iheyensis HTE831] Length = 121 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 1/111 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R SQ++L + I + + E G V L + + E F Sbjct: 3 IGDRIIQLREAKQWSQKELAKIAQINVSVMNRIEAGDRPVRGEELSQFASIFEVSTDFLL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPD-GLQLNRYFIQIDDVKVRQKIIELVR 124 + V + E+ + ++ I L + + Q + + ++ Sbjct: 63 GRTDEVERNTVDEKQHFLEKIQEDFPEADLMFNDLASFSSEDIQDVYDYIK 113 >gi|28900659|ref|NP_800314.1| transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260365534|ref|ZP_05778071.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus K5030] gi|260877597|ref|ZP_05889952.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus AN-5034] gi|260895390|ref|ZP_05903886.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466] gi|28809039|dbj|BAC62147.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus RIMD 2210633] gi|308085253|gb|EFO34948.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466] gi|308090582|gb|EFO40277.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus AN-5034] gi|308114316|gb|EFO51856.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus K5030] Length = 207 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 3/77 (3%) Query: 2 VGNKKIPNPVDIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 + K N +I +G+RI+ R LG++ E+ + G+ + K E Sbjct: 12 MTLAKEQNDQNIEPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQA 71 Query: 59 LQHISEVLESPISFFFD 75 +Q ++ L+ + F+ Sbjct: 72 MQKLALGLQIDMPQLFE 88 >gi|125972885|ref|YP_001036795.1| XRE family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256006006|ref|ZP_05430945.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281417085|ref|ZP_06248105.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|125713110|gb|ABN51602.1| transcriptional regulator, XRE family [Clostridium thermocellum ATCC 27405] gi|255990029|gb|EEU00172.1| transcriptional regulator, XRE family [Clostridium thermocellum DSM 2360] gi|281408487|gb|EFB38745.1| transcriptional regulator, XRE family [Clostridium thermocellum JW20] gi|316940876|gb|ADU74910.1| helix-turn-helix domain protein [Clostridium thermocellum DSM 1313] Length = 231 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 25/56 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R +SQ+ + + LGIT Q V YE L+ +++ + I + Sbjct: 7 LKQLREEKRLSQKDIADYLGITRQAVASYELAKREPDYEVLKKLADYFDVSIDYLL 62 >gi|30260266|ref|NP_842643.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|42779154|ref|NP_976401.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47525328|ref|YP_016677.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183109|ref|YP_026361.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49479321|ref|YP_034428.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145140|ref|YP_081687.1| transcriptional regulator [Bacillus cereus E33L] gi|65317536|ref|ZP_00390495.1| COG1396: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|118475846|ref|YP_892997.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|165872558|ref|ZP_02217190.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167635071|ref|ZP_02393388.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641513|ref|ZP_02399761.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170688934|ref|ZP_02880136.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707546|ref|ZP_02897999.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177655635|ref|ZP_02936998.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190569001|ref|ZP_03021902.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196036381|ref|ZP_03103778.1| DNA-binding protein [Bacillus cereus W] gi|196041773|ref|ZP_03109063.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196047358|ref|ZP_03114571.1| DNA-binding protein [Bacillus cereus 03BB108] gi|206977949|ref|ZP_03238836.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217957651|ref|YP_002336193.1| DNA-binding protein [Bacillus cereus AH187] gi|218901277|ref|YP_002449111.1| DNA-binding protein [Bacillus cereus AH820] gi|222093845|ref|YP_002527894.1| transcriptional regulator [Bacillus cereus Q1] gi|225862128|ref|YP_002747506.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227812749|ref|YP_002812758.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228912814|ref|ZP_04076462.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925328|ref|ZP_04088425.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931577|ref|ZP_04094484.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943881|ref|ZP_04106267.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229015477|ref|ZP_04172476.1| Transcriptional regulator Xre [Bacillus cereus AH1273] gi|229021686|ref|ZP_04178269.1| Transcriptional regulator Xre [Bacillus cereus AH1272] gi|229089206|ref|ZP_04220488.1| Transcriptional regulator Xre [Bacillus cereus Rock3-42] gi|229100872|ref|ZP_04231679.1| Transcriptional regulator Xre [Bacillus cereus Rock3-28] gi|229119737|ref|ZP_04248999.1| Transcriptional regulator Xre [Bacillus cereus 95/8201] gi|229136921|ref|ZP_04265549.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST26] gi|229159248|ref|ZP_04287273.1| Transcriptional regulator Xre [Bacillus cereus R309803] gi|229182469|ref|ZP_04309721.1| Transcriptional regulator Xre [Bacillus cereus BGSC 6E1] gi|229194465|ref|ZP_04321269.1| Transcriptional regulator Xre [Bacillus cereus m1293] gi|229603974|ref|YP_002864727.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254682298|ref|ZP_05146159.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724216|ref|ZP_05186001.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254735477|ref|ZP_05193185.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254744621|ref|ZP_05202300.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254756326|ref|ZP_05208355.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254762382|ref|ZP_05214224.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|300119170|ref|ZP_07056871.1| DNA-binding protein [Bacillus cereus SJ1] gi|301051813|ref|YP_003790024.1| putative transcriptional regulator [Bacillus anthracis CI] gi|30253587|gb|AAP24129.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|42735069|gb|AAS39009.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47500476|gb|AAT29152.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177036|gb|AAT52412.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|49330877|gb|AAT61523.1| probable transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978609|gb|AAU20159.1| probable transcriptional regulator [Bacillus cereus E33L] gi|118415071|gb|ABK83490.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|164711686|gb|EDR17231.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510498|gb|EDR85896.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529545|gb|EDR92295.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170127542|gb|EDS96416.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170667158|gb|EDT17919.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172080046|gb|EDT65145.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190559925|gb|EDV13909.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195991011|gb|EDX54982.1| DNA-binding protein [Bacillus cereus W] gi|196021760|gb|EDX60454.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196027393|gb|EDX66010.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|206743855|gb|EDZ55275.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217064728|gb|ACJ78978.1| DNA-binding protein [Bacillus cereus AH187] gi|218537235|gb|ACK89633.1| DNA-binding protein [Bacillus cereus AH820] gi|221237892|gb|ACM10602.1| probable transcriptional regulator [Bacillus cereus Q1] gi|225785876|gb|ACO26093.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227005378|gb|ACP15121.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228589055|gb|EEK47069.1| Transcriptional regulator Xre [Bacillus cereus m1293] gi|228601049|gb|EEK58617.1| Transcriptional regulator Xre [Bacillus cereus BGSC 6E1] gi|228624263|gb|EEK81064.1| Transcriptional regulator Xre [Bacillus cereus R309803] gi|228646586|gb|EEL02792.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST26] gi|228663762|gb|EEL19340.1| Transcriptional regulator Xre [Bacillus cereus 95/8201] gi|228682550|gb|EEL36620.1| Transcriptional regulator Xre [Bacillus cereus Rock3-28] gi|228694169|gb|EEL47850.1| Transcriptional regulator Xre [Bacillus cereus Rock3-42] gi|228739622|gb|EEL90035.1| Transcriptional regulator Xre [Bacillus cereus AH1272] gi|228745820|gb|EEL95823.1| Transcriptional regulator Xre [Bacillus cereus AH1273] gi|228815838|gb|EEM62073.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828129|gb|EEM73856.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834375|gb|EEM79915.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846874|gb|EEM91878.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268382|gb|ACQ50019.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|298723492|gb|EFI64233.1| DNA-binding protein [Bacillus cereus SJ1] gi|300373982|gb|ADK02886.1| probable transcriptional regulator [Bacillus cereus biovar anthracis str. CI] gi|324324065|gb|ADY19325.1| putative transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 67 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RIR R + G +QE + LG++ + + E+G + +++ L+ I Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSIDELM 65 >gi|326797596|ref|YP_004315415.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] gi|326548360|gb|ADZ76745.1| helix-turn-helix domain protein [Sphingobacterium sp. 21] Length = 131 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 11/133 (8%) Query: 13 INVGKRIRLRRM-ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + VG IR R + + + L I+ + E V + +RL+ I+ + E Sbjct: 1 MKVGDNIREIRETEKNFKRSYMADRLNISERAYGNIENNVTDISLTRLEEIASIFECSPE 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVRSIVSS 129 + + + ++ G + Q + + +KI++L ++ S Sbjct: 61 YILN--------YKQSKKEFYNYFHNKSGNKGTNIMHQGTGVESESNKKILKLQEELLES 112 Query: 130 EKKYRTIEEECMV 142 E+K ++ E + Sbjct: 113 ERKRISLLEALLK 125 >gi|307324401|ref|ZP_07603609.1| helix-turn-helix domain protein [Streptomyces violaceusniger Tu 4113] gi|306890132|gb|EFN21110.1| helix-turn-helix domain protein [Streptomyces violaceusniger Tu 4113] Length = 394 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 43/123 (34%), Gaps = 2/123 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P P D + G RI R G++Q L + + ++ + + E G + +++ L Sbjct: 1 MPLPDDEHTGARIAHHRKRAGLTQRGLTQKVPYSYSLLTQVESGHKPASPDLVAAVAKAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 ++ P V ++ I L I + +++ +++ Sbjct: 61 CIDVTAL-TGQPYVTELQKDRLAALVRPIREALDLYDLGADPAIT-PRPTPQLVAAAQAL 118 Query: 127 VSS 129 Sbjct: 119 CQQ 121 >gi|291530057|emb|CBK95642.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 79 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 20/58 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+ R G+ QE+L L ++ Q + E G ++ I F Sbjct: 15 NRLEEIRKERGIKQEELAAALEVSRQTIGSLENGRYNPSIILAFKLARYFNMSIEDIF 72 >gi|283786292|ref|YP_003366157.1| phage repressor protein [Citrobacter rodentium ICC168] gi|282949746|emb|CBG89365.1| putative phage repressor protein [Citrobacter rodentium ICC168] Length = 231 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS 71 +N+G RIR R+ GM L + +GI V + E G + L + L ++ Sbjct: 1 MNIGNRIRELRLARGMKISDLADAVGIDGANVSRVETGKQKSFTEQSLSKYANALGVDVA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTP 98 F S + S ENN + P Sbjct: 61 ELFTPSINETTVYKSSENNPVYGEDDP 87 >gi|237808823|ref|YP_002893263.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] gi|237501084|gb|ACQ93677.1| transcriptional regulator, XRE family [Tolumonas auensis DSM 9187] Length = 186 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ ++L R G S +K G++ + + E+G + + L I+ E+ S Sbjct: 6 RHIAATLQLLRKQRGWSLDKTAAATGVSKAMLGQIERGESSPTVATLWKIATGFETSFST 65 Query: 73 FFDVS 77 F + S Sbjct: 66 FLEPS 70 >gi|210614272|ref|ZP_03290143.1| hypothetical protein CLONEX_02356 [Clostridium nexile DSM 1787] gi|210150756|gb|EEA81765.1| hypothetical protein CLONEX_02356 [Clostridium nexile DSM 1787] Length = 209 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ ++ + QL + +D + ++ +++ Sbjct: 70 RGETDEYETDITDKKELQIRDAMGDILKQLPLDLSKKEDAFSKDLLLLMLKQ 121 >gi|197284378|ref|YP_002150250.1| phage reprossor [Proteus mirabilis HI4320] gi|194681865|emb|CAR41178.1| phage reprossor [Proteus mirabilis HI4320] Length = 233 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 2/82 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FFD 75 +RI+ R+ M+Q +L E +G++ Q VQ++E +R+ I+E+LE ++ F Sbjct: 6 ERIKQARLAKNMTQAELAELVGVSPQSVQQWETST-EPRKNRVIKIAEILEVDTNWLLFG 64 Query: 76 VSPTVCSDISSEENNVMDFIST 97 ++ + S D + Sbjct: 65 ITDIDERNKVSSIQINQDIEVS 86 >gi|168216107|ref|ZP_02641732.1| DNA-binding protein [Clostridium perfringens NCTC 8239] gi|182381810|gb|EDT79289.1| DNA-binding protein [Clostridium perfringens NCTC 8239] Length = 348 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 11/142 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ +R G++QE++ LG++ V K+EKG + L ++ +L+ ++ Sbjct: 1 MRINEIIKEKRNAQGLTQEQVAMYLGVSTPAVNKWEKGTCYPDITLLPALARLLKIDLNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN--RYFIQIDDVKVRQKIIELVRSI---- 126 + N + I+ DG + + +I + K+I V ++ Sbjct: 61 LLSFKEDLSEQEIGVFVNDLVKIANNDGFHVAFEKAMDKIYEYPTCDKLILTVSTVMQGS 120 Query: 127 -----VSSEKKYRTIEEECMVE 143 ++KY EE ++ Sbjct: 121 IYMFGADDKEKYENQIEEFYIK 142 >gi|21322195|gb|AAM47490.1| putative transcriptional regulator [Serratia sp. 2-68] Length = 88 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESP 69 + KR++ R G++QE+LG GI + YE G R + ++VL P Sbjct: 1 MITKRLKSARTRAGLTQEQLGVLAGIDESTARGRISSYETGAYRPVFETMCLFAKVLNVP 60 Query: 70 ISFFFDVSPTVCSDISS 86 +F+ V ++ Sbjct: 61 ECYFYIVDDQFAEEVLQ 77 >gi|325519127|gb|EGC98605.1| XRE family transcriptional regulator [Burkholderia sp. TJI49] Length = 203 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 1/97 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG++I+ R ++ + L G++ + + E+ + ++ L + F Sbjct: 26 VGEQIQRLRNERRLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGITLDELF 85 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P I + + + ++ DG R + ID Sbjct: 86 S-QPKAAETIRVDGPHDIPTLAGHDGQYQLRVWGPID 121 >gi|283470765|emb|CAQ49976.1| phage repressor [Staphylococcus aureus subsp. aureus ST398] Length = 243 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 8/119 (6%) Query: 15 VGKRIRLRRMILGMSQEKLG--------ECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +G+ ++ R M+ E+L + + +T ++ K+E S + ++E Sbjct: 3 IGEGLKKLRKNKNMTMEQLATDLNNKYPDLMKLTKGKISKWENEKEEPRLSTAKILAEYF 62 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 I+ + S T D + + LN Q+++ I S Sbjct: 63 NVKINDLYSESNTTYKDDNDITSLYNKLTPPRQENVLNYANEQLEEQNKVTSIDGYKES 121 >gi|258538334|ref|YP_003172833.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|257150010|emb|CAR88982.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] Length = 202 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 26/73 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R+ M+Q L + L ++ V +E N + I+ + + Sbjct: 5 KQLQQIRIAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARIFSVSLDTLILD 64 Query: 77 SPTVCSDISSEEN 89 + + + Sbjct: 65 DSELNEKLIKDSK 77 >gi|238925837|ref|YP_002939355.1| hypothetical protein EUBREC_3495 [Eubacterium rectale ATCC 33656] gi|238877514|gb|ACR77221.1| Hypothetical protein EUBREC_3495 [Eubacterium rectale ATCC 33656] gi|295098807|emb|CBK87896.1| Helix-turn-helix. [Eubacterium cylindroides T2-87] Length = 209 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ ++ + QL + +D + ++ +++ Sbjct: 70 KGETDEYETDITDKKELQIRDAMGDILKQLPLDLSKKEDAFSKDLLLLMLKQ 121 >gi|255323959|ref|ZP_05365085.1| transcriptional regulator, HTH_3 family [Corynebacterium tuberculostearicum SK141] gi|311739970|ref|ZP_07713804.1| HTH_3 family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|255299139|gb|EET78430.1| transcriptional regulator, HTH_3 family [Corynebacterium tuberculostearicum SK141] gi|311305043|gb|EFQ81112.1| HTH_3 family transcriptional regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 87 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK P+ + R+R+ R MS+ +L E + + Q V E+G + Sbjct: 1 MSPKKKPSA---PIYNRVRVLRAERDMSRAQLAEAIDVNPQTVGALERGDHSPSLDLAFR 57 Query: 62 ISEVLESPISFFFDVSP 78 + EV + P+ F Sbjct: 58 VCEVFDLPVEAIFSRQE 74 >gi|212709275|ref|ZP_03317403.1| hypothetical protein PROVALCAL_00310 [Providencia alcalifaciens DSM 30120] gi|212688187|gb|EEB47715.1| hypothetical protein PROVALCAL_00310 [Providencia alcalifaciens DSM 30120] Length = 377 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 43/110 (39%), Gaps = 7/110 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +RL R+ +S E++ E +G T Q +Q+ E G ++ VL FF++ Sbjct: 4 GSNLRLARLYHELSLEQVAERVGKTRQYIQRLESGYALPTKELTNELACVLFVLPDFFYN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + ++ ++ + ++ +++I++ Sbjct: 64 NEQSPVNEEIVHFRK-------RSATRVATKLATLAKAELYRRLIDVFEE 106 >gi|188588059|ref|YP_001921522.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] gi|188498340|gb|ACD51476.1| DNA-binding protein [Clostridium botulinum E3 str. Alaska E43] Length = 114 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 10/118 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R+ +SQ KL E I+ Q V YEKG+ + +S ++ +S + Sbjct: 7 NRLKELRIEKDLSQAKLAELFNISQQAVSHYEKGIRDIDSSLIKTLSNFFSVSSDYLLG- 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 S+ N D + L + + + D R++I + + K + Sbjct: 66 --------ISDIRNYTDDPNVTISLHSDTDYDDLPDEA-RKEINNFIEYVKQKYKDKK 114 >gi|183599591|ref|ZP_02961084.1| hypothetical protein PROSTU_03072 [Providencia stuartii ATCC 25827] gi|188021839|gb|EDU59879.1| hypothetical protein PROSTU_03072 [Providencia stuartii ATCC 25827] Length = 207 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 4/102 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ RIR RR L ++Q +L E GI+ Q ++ E G + + I++ L+S + Sbjct: 1 MSLASRIRQRRQELNLTQTELAEKAGISQQSIESIENGRTK-KPRNIIEIAKALQSHPEW 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + SE N+ + + L + I D + Sbjct: 60 LLNGKSIMP---ISEVNSRRIPLLSYVQAGLFKDANPITDYE 98 >gi|170017857|ref|YP_001728776.1| Cro/CI family transcriptional regulator [Leuconostoc citreum KM20] gi|169804714|gb|ACA83332.1| Transcriptional regulator, Cro/CI family [Leuconostoc citreum KM20] Length = 84 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR RR +SQ+ L + +T Q + E + ++ +LE+ + F S Sbjct: 21 IRKRRKERHLSQDMLAQKANVTRQTINAIENAKYDPSLALAFKLATILETTVDQLFTKSE 80 Query: 79 TVCS 82 Sbjct: 81 DEND 84 >gi|159038038|ref|YP_001537291.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916873|gb|ABV98300.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 175 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 1/93 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R G+S L GI+ + E+G S L ++ L P+ + Sbjct: 2 GSHVHRLRTAAGISLADLAAAGGISRTTLHGIEQGHGNPTLSTLWALATALRVPLGELLE 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 +P +D+ +++ +L Sbjct: 62 -TPNSTTDVVRADDDRPRIDGDAVSARLLHRIR 93 >gi|154151191|ref|YP_001404809.1| XRE family transcriptional regulator [Candidatus Methanoregula boonei 6A8] gi|153999743|gb|ABS56166.1| transcriptional regulator, XRE family [Methanoregula boonei 6A8] Length = 69 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R + ++QE L +G+T Q + EKG IS + I F Sbjct: 3 NKIKVYRAMHDLTQEDLAGAIGVTRQTILAIEKGKYVPSLDLAFRISRYFKVNIEEIF 60 >gi|56695066|ref|YP_165413.1| DNA binding protein, putative [Ruegeria pomeroyi DSS-3] gi|56676803|gb|AAV93469.1| DNA binding protein, putative [Ruegeria pomeroyi DSS-3] Length = 189 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N + + + R++ R G+S E + G++ V + E+G + + L Sbjct: 1 MTENS---DDILNRLPARLKEARRAQGLSLEAVANLSGVSRSMVSQIERGESSPTIATLW 57 Query: 61 HISEVLESP 69 +++ L+ Sbjct: 58 NLTRALQVD 66 >gi|95930530|ref|ZP_01313265.1| protein of unknown function DUF955 [Desulfuromonas acetoxidans DSM 684] gi|95133365|gb|EAT15029.1| protein of unknown function DUF955 [Desulfuromonas acetoxidans DSM 684] Length = 367 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 6/122 (4%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 NKK+ NP R++ R G + KL +CL +T + + YE G + I+ Sbjct: 2 NKKVFNP------ARLKFAREKRGFTIRKLCDCLKLTTKSLSDYENGRRDPNDKTISEIA 55 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 ++L FFF S ++ ++ L + ++ + EL Sbjct: 56 KILNFQTGFFFLGPLHSIEPSSVSFRSLARMRASVRNSALRAGELALEMDTWINRRFELP 115 Query: 124 RS 125 ++ Sbjct: 116 KA 117 >gi|324992002|gb|EGC23924.1| transcriptional regulator [Streptococcus sanguinis SK405] Length = 71 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 28/70 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFWD 61 Query: 77 SPTVCSDISS 86 S D Sbjct: 62 SQLTDEDSED 71 >gi|319409074|emb|CBI82722.1| Transcriptional regulator [Bartonella schoenbuchensis R1] Length = 94 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 63/99 (63%), Gaps = 9/99 (9%) Query: 25 ILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDI 84 +LGMSQ+ L LGI+FQQ+QKYEKG+NRVGA RL+ I+++ PISFF+ + T + Sbjct: 1 MLGMSQKTLAHHLGISFQQIQKYEKGLNRVGAGRLKDIADIFRVPISFFYPDTTTKEGAV 60 Query: 85 SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 ++ + IS+ + + F + +K ++ I+EL+ Sbjct: 61 ----HHHDEMISSKE----VKSFRVLTPIK-QKVILELI 90 >gi|303246095|ref|ZP_07332376.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] gi|302492491|gb|EFL52362.1| transcriptional regulator, XRE family [Desulfovibrio fructosovorans JJ] Length = 107 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 35/63 (55%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+I+ R ++QEKL + G++ Q + + E+G + ++ +S+ L+ P++ F Sbjct: 9 GKKIKSIRRARDITQEKLADLSGLSLQYIGEIERGRRNPSLTSIEQLSKALDIPMAELFS 68 Query: 76 VSP 78 + Sbjct: 69 LEE 71 >gi|302545781|ref|ZP_07298123.1| putative DNA-binding protein [Streptomyces hygroscopicus ATCC 53653] gi|302463399|gb|EFL26492.1| putative DNA-binding protein [Streptomyces himastatinicus ATCC 53653] Length = 469 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P + + G RI R G++Q+ L ++ + K E G S + + L Sbjct: 72 MPRSNEEHTGARIARTRRERGLTQQGLAMRANVSKSLLSKVECGQKPASPSLIAACARAL 131 Query: 67 ESPISFFF 74 S Sbjct: 132 SVTTSDLL 139 >gi|283769042|ref|ZP_06341948.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104399|gb|EFC05776.1| DNA-binding protein [Bulleidia extructa W1219] Length = 136 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 35/74 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ G++Q+++GE L ++ Q V YE G R + + + P+++F Sbjct: 13 RQMKQVRIENGLTQKEMGEILNVSAQSVSAYENGTVRPDIEVIFRYMDYFQIPMAYFLKE 72 Query: 77 SPTVCSDISSEENN 90 + D + Sbjct: 73 LNSELKDKPTALEM 86 >gi|225626457|ref|ZP_03784496.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|260169486|ref|ZP_05756297.1| hypothetical protein BruF5_14234 [Brucella sp. F5/99] gi|261759011|ref|ZP_06002720.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] gi|225618114|gb|EEH15157.1| Hypothetical protein, conserved [Brucella ceti str. Cudo] gi|261738995|gb|EEY26991.1| helix-turn-helix domain-containing protein [Brucella sp. F5/99] Length = 126 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 3/120 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 GKR+R R G++Q+++ + L ++ + E G + LQ I Sbjct: 5 GKRLRELREERGVTQKEMAQALRVSSAYLSALEHGRRGQPTWDLLQRIITYFNIIWDE-- 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + +S + +P QL + + R I L I ++ K+ R Sbjct: 63 AEELQNLTAVSHPRVVIDTSGLSPQATQLANLLAKNIRLIDRDTIKHLTEEIAAARKRRR 122 >gi|160944429|ref|ZP_02091657.1| hypothetical protein FAEPRAM212_01939 [Faecalibacterium prausnitzii M21/2] gi|166033500|ref|ZP_02236329.1| hypothetical protein DORFOR_03226 [Dorea formicigenerans ATCC 27755] gi|260437651|ref|ZP_05791467.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|261367918|ref|ZP_05980801.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|158444211|gb|EDP21215.1| hypothetical protein FAEPRAM212_01939 [Faecalibacterium prausnitzii M21/2] gi|166026685|gb|EDR45442.1| hypothetical protein DORFOR_03226 [Dorea formicigenerans ATCC 27755] gi|282570731|gb|EFB76266.1| toxin-antitoxin system, antitoxin component, Xre family [Subdoligranulum variabile DSM 15176] gi|292810006|gb|EFF69211.1| toxin-antitoxin system, antitoxin component, Xre family [Butyrivibrio crossotus DSM 2876] gi|295104413|emb|CBL01957.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii SL3/3] Length = 65 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 19/63 (30%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G+ QE L L ++ Q + E G I+ I F Sbjct: 3 NRLEELRKQRGIKQEDLANALEVSRQTIGSLENGRYNPSIQLAFKIARYFNMSIEEIFIY 62 Query: 77 SPT 79 Sbjct: 63 EED 65 >gi|153803053|ref|ZP_01957639.1| conserved domain protein [Vibrio cholerae MZO-3] gi|124121411|gb|EAY40154.1| conserved domain protein [Vibrio cholerae MZO-3] Length = 69 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRI R G++Q+KL I V + E+G + +L I+E L Sbjct: 9 VGKRIAKMRKSKGLTQDKLALFAEIDRSYVGRIERGEVNLTVEKLYEIAETLGCDAKELL 68 >gi|160879107|ref|YP_001558075.1| XRE family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160427773|gb|ABX41336.1| transcriptional regulator, XRE family [Clostridium phytofermentans ISDg] Length = 63 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R+ + +SQ++L + +G++ Q + EKG + I +VL + F Sbjct: 5 KLKSARVAMDLSQQQLADLVGVSRQTISLIEKGDYNPTINLCIAICKVLHKTLDELF 61 >gi|30018346|ref|NP_829977.1| XRE family transcriptional regulator [Bacillus cereus ATCC 14579] gi|218235456|ref|YP_002364925.1| DNA-binding protein [Bacillus cereus B4264] gi|228919025|ref|ZP_04082405.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228956516|ref|ZP_04118313.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|229107761|ref|ZP_04237398.1| Transcriptional regulator Xre [Bacillus cereus Rock1-15] gi|229125592|ref|ZP_04254625.1| Transcriptional regulator Xre [Bacillus cereus BDRD-Cer4] gi|229142881|ref|ZP_04271323.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST24] gi|229148484|ref|ZP_04276741.1| Transcriptional regulator Xre [Bacillus cereus m1550] gi|296500908|ref|YP_003662608.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] gi|29893886|gb|AAP07178.1| Transcriptional regulator, Xre family [Bacillus cereus ATCC 14579] gi|218163413|gb|ACK63405.1| DNA-binding protein [Bacillus cereus B4264] gi|228635026|gb|EEK91598.1| Transcriptional regulator Xre [Bacillus cereus m1550] gi|228640593|gb|EEK96981.1| Transcriptional regulator Xre [Bacillus cereus BDRD-ST24] gi|228657909|gb|EEL13714.1| Transcriptional regulator Xre [Bacillus cereus BDRD-Cer4] gi|228675734|gb|EEL30941.1| Transcriptional regulator Xre [Bacillus cereus Rock1-15] gi|228803206|gb|EEM50027.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|228840674|gb|EEM85935.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296321960|gb|ADH04888.1| XRE family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 67 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RIR R + G +QE + LG++ + + E+G + +++ L I Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSIEELM 65 >gi|89100265|ref|ZP_01173131.1| hypothetical protein B14911_24576 [Bacillus sp. NRRL B-14911] gi|89085003|gb|EAR64138.1| hypothetical protein B14911_24576 [Bacillus sp. NRRL B-14911] Length = 116 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R L ++Q++L L I ++KYE G + + IS +L+ P S Sbjct: 3 AIGLAIKQNRERLNLTQQELAVKLRIGTSTIEKYENGCQQPDTQTILKISTILDVPASEL 62 Query: 74 FD 75 + Sbjct: 63 LE 64 >gi|89895494|ref|YP_518981.1| hypothetical protein DSY2748 [Desulfitobacterium hafniense Y51] gi|89334942|dbj|BAE84537.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 118 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN--RVGASRLQHISEVLESPI 70 I +G RI R + M+Q++L E +GIT + + + E + L I+++ P Sbjct: 50 IQIGLRIAYYRKLNEMTQDQLAERIGITSKYLSQVETPSCVQPISLKTLFAIADLFHVPP 109 Query: 71 SFFFDVSPT 79 F + Sbjct: 110 HKFLEFDKD 118 >gi|152965329|ref|YP_001361113.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) [Kineococcus radiotolerans SRS30216] gi|151359846|gb|ABS02849.1| EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) [Kineococcus radiotolerans SRS30216] Length = 516 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 24/49 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +G IR R G++Q +L E LG + V + E+G V LQ + Sbjct: 17 QIGALIRDARKHRGLTQVQLAERLGTSQSAVHRMEQGQQNVSIDMLQRV 65 >gi|312134839|ref|YP_004002177.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774890|gb|ADQ04377.1| helix-turn-helix domain protein [Caldicellulosiruptor owensensis OL] Length = 84 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R + + Q+++ E L I+ Q+ +YE G ++ I+++L + F Sbjct: 2 RLKEIRKMKNLKQKEVAEKLQISPQRYCQYENGKRKIPIDIAIKIAQILNMSMDEIF 58 >gi|295097139|emb|CBK86229.1| Predicted transcriptional regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 230 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R G++Q+ LG+ +G++ +QK E G ++L I+ L + Sbjct: 8 RLKEARAARGLTQKALGDLVGVSQAAIQKIETGKAS-QTTKLVEIANALGVMPDWLSSGE 66 Query: 78 PTVCSD 83 + +D Sbjct: 67 GAMLND 72 >gi|291541611|emb|CBL14721.1| transcriptional regulator, XRE family [Ruminococcus bromii L2-63] Length = 69 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 26/56 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RI+ R ++Q+++ + L KYE+G + S L +++ + + + Sbjct: 4 RIKDLREDNDLTQKEIAKVLMCDQSLYSKYERGEREIPLSLLIKLADCYGTSLDYL 59 >gi|224824341|ref|ZP_03697449.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224603760|gb|EEG09935.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 194 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 31/95 (32%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D + KRI R S EKL E G++ + E+ A+ L +++ L + Sbjct: 3 LDTRLAKRIHSLRKSRAYSLEKLAELSGVSRSMISLIERAETSATAAVLNKLADALGVSL 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + F P L R Sbjct: 63 ASLFSEEAEELVASPLSRAEEQPVWQDPASGYLRR 97 >gi|212703718|ref|ZP_03311846.1| hypothetical protein DESPIG_01765 [Desulfovibrio piger ATCC 29098] gi|212672870|gb|EEB33353.1| hypothetical protein DESPIG_01765 [Desulfovibrio piger ATCC 29098] Length = 215 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGKRIR R + E L + G+T +++ E LQ ++ L + F Sbjct: 32 VGKRIRTFREERNVDLETLSQNTGLTVNFLERMENDEIYPTIGPLQKVARSLGVRLGTFL 91 Query: 75 DV 76 D Sbjct: 92 DD 93 >gi|89900609|ref|YP_523080.1| XRE family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89345346|gb|ABD69549.1| transcriptional regulator, XRE family [Rhodoferax ferrireducens T118] Length = 650 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 42/108 (38%), Gaps = 1/108 (0%) Query: 15 VGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ ++ R +SQ+ L GI + E+G+ A L+ I L+ P +++ Sbjct: 8 LGELVKSMREHKKLSQDALSSALPGINRSNIAHLEQGLRLPRADILEQICIHLDIPKNYW 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + S E + + L + ++ K +++ + Sbjct: 68 MEFLDQDVQTRSDFEEQLAELCGRSVTLDRHETSTRLVADKAIKRLFD 115 >gi|23664437|gb|AAN39374.1| regulator [Azoarcus evansii] Length = 300 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 25/146 (17%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKR+R R GM+++ + G++ + + E G V L +I+ L + Sbjct: 29 LGKRVREIRDRRGMTRKLVAREAGVSERHLAHLEGGDGNVSIVLLHNIARALNVSLIELL 88 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-----DVKVRQKIIELV------ 123 ++ + E+ + F+ +L ++ + VR+K + L+ Sbjct: 89 ----APETEDTVEKRLIRRFLERLPQHRLEEVVFRLMRDFGHEEAVRRKRVALIGLRGAG 144 Query: 124 -----RSIVSSE-----KKYRTIEEE 139 + + E + R IE+E Sbjct: 145 KSTLGKRLAQEENMPFIELDREIEKE 170 >gi|332976082|gb|EGK12950.1| helix-turn-helix domain protein [Desmospora sp. 8437] Length = 359 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++R R L ++QE LG +G++ Q + +EKG + ++L ++ L P+ Sbjct: 9 QLRPLREQLTVTQEDLGRSVGVSRQTIAAWEKGESTPTVAQLFSLARTLGVPVEILLGRK 68 Query: 78 PTVC 81 Sbjct: 69 KEQD 72 >gi|320527629|ref|ZP_08028803.1| helix-turn-helix protein [Solobacterium moorei F0204] gi|320131950|gb|EFW24506.1| helix-turn-helix protein [Solobacterium moorei F0204] Length = 691 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +++ L R G+SQ + + + F +E G + S ++ +S + P+ F D Sbjct: 7 EKLTLLRKHYGLSQGDVATKINVKFTDYMNWENGNSIPSISNIRKLSVLFGVPVESFID 65 >gi|317484077|ref|ZP_07943008.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924665|gb|EFV45820.1| helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 97 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 5/71 (7%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 KK P+ G IR R G+SQ+ L + + ++ + E G L I+ Sbjct: 20 KKSPDA-----GTAIRHFRHEAGLSQDGLADRMDVSPSYISMLESGKRYPSIEMLIRIAL 74 Query: 65 VLESPISFFFD 75 L D Sbjct: 75 ALNIKPGLMLD 85 >gi|313899139|ref|ZP_07832664.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956079|gb|EFR37722.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 65 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R + ++QE+L E + +T Q + EKG + I VL ++ F Sbjct: 6 KLKAARAAMDLTQEQLAEKVSVTRQTINAIEKGDYNPSINLCITICRVLGKTLNDLFWEE 65 >gi|307709969|ref|ZP_07646416.1| transcriptional regulator [Streptococcus mitis SK564] gi|307619340|gb|EFN98469.1| transcriptional regulator [Streptococcus mitis SK564] Length = 287 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + S++S+ + + + L + Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYDNLEYIYR 96 >gi|304560689|gb|ADM43352.1| P22 repressor protein c2 [Edwardsiella tarda FL6-60] Length = 216 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI RR L +SQ L + +G++ + ++E+ L +++E L+ + + Sbjct: 7 GYRIHKRRKELKLSQVSLSKAVGVSNVAISQWERDETSPRGDALLNLAEALQCSAEYLVN 66 Query: 76 VSP 78 Sbjct: 67 GGD 69 >gi|300917947|ref|ZP_07134577.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 115-1] gi|300414844|gb|EFJ98154.1| toxin-antitoxin system, antitoxin component, Xre family [Escherichia coli MS 115-1] Length = 73 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+++R R G++ EKL + G++ + + R A +L +++ L SFF Sbjct: 5 LGEKLRDLRKQRGLTLEKLADMAGLSKSYLWELENRESQRPSAEKLTALADALGVGTSFF 64 Query: 74 FDVS 77 + Sbjct: 65 LEDD 68 >gi|257792684|ref|YP_003183290.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257476581|gb|ACV56901.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 70 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+RIR R G+S + +G+ + E G +G L I++ L +S Sbjct: 6 IKLGQRIRKEREAQGISLRRFALMIGVGHTYLVDVENGRRNIGIENLCRIADGLGIRVSE 65 Query: 73 F 73 Sbjct: 66 L 66 >gi|218665577|ref|YP_002425471.1| transcriptional regulator, putative [Acidithiobacillus ferrooxidans ATCC 23270] gi|218517790|gb|ACK78376.1| transcriptional regulator, putative [Acidithiobacillus ferrooxidans ATCC 23270] Length = 243 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 4/80 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG----VNRVGASRLQHISEVLES 68 + + +RI+ G +Q L E LGI+ + ++ G L ++E+ Sbjct: 1 MELHERIKFAIKQSGFTQNALAEKLGISRGSISQWVSGNIATRTVPSRENLFRLAELSGV 60 Query: 69 PISFFFDVSPTVCSDISSEE 88 PI + + + E Sbjct: 61 PIEWLWSGRESAAHKPQKPE 80 >gi|218532810|ref|YP_002423626.1| XRE family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|254563828|ref|YP_003070923.1| XRE family transcriptional regulator [Methylobacterium extorquens DM4] gi|218525113|gb|ACK85698.1| transcriptional regulator, XRE family [Methylobacterium chloromethanicum CM4] gi|254271106|emb|CAX27113.1| putative transcriptional regulator, XRE family [Methylobacterium extorquens DM4] Length = 209 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 32/91 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R +S +L E G+ + + E+ + + +S+ L+ I Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 85 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S + +S ++L Sbjct: 86 LATSDEEPFIERFSRADTPRLVSDDGKVRLA 116 >gi|312881450|ref|ZP_07741244.1| predicted transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309370872|gb|EFP98330.1| predicted transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 207 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 27/61 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGYRIKEIRGKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLALGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|300716262|ref|YP_003741065.1| transcriptional regulator [Erwinia billingiae Eb661] gi|299062098|emb|CAX59214.1| Predicted transcriptional regulator [Erwinia billingiae Eb661] Length = 186 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 9/108 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ P+ +G+ ++ R S E G++ + + E+G + + L Sbjct: 1 MME----PD-----LGQTLKSLRTSREWSLTMAAEQTGVSKAMLGQIERGESSPTVATLW 51 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 I+ P S F + S ++ + +Q+ F Sbjct: 52 KIATGFNVPFSLFITATTPPSSAEVQRSGSIASWQQHSGNMQVTPVFP 99 >gi|297158106|gb|ADI07818.1| transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 193 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 4/114 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P P + IR R G+S +L + GI + + E G L IS L Sbjct: 11 TPRPPLGRIAASIRKERGRAGLSLSELAKRAGIAKSTLSQLESGAGNPSVETLWAISVTL 70 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + P S D + + E + + L R+ I Sbjct: 71 DVPFSRLVDPPRPPVTVLRHGEGIAVPSERSNYVATLLAS----SPPNARRDIY 120 >gi|295106173|emb|CBL03716.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 384 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + R G++QE L E LG++ Q V K+E G N +L + ++ + + S Sbjct: 6 NLVYLRQHYGVTQEGLAEQLGVSRQTVSKWEAGTNYPEMDKLLALCDLFHTNLDDLMRGS 65 Query: 78 PTVCSDISSEENNVM 92 V + +E + Sbjct: 66 VHVANKGDTERYDHH 80 >gi|269103372|ref|ZP_06156069.1| transcriptional regulator XRE family [Photobacterium damselae subsp. damselae CIP 102761] gi|268163270|gb|EEZ41766.1| transcriptional regulator XRE family [Photobacterium damselae subsp. damselae CIP 102761] Length = 212 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ I G+SQ++LGE LG+ + + G + L+ I+ L + I + Sbjct: 5 ERIKRLAKIQGISQKQLGEALGLQQGTMSRKLSGKYGIEVRELETIATTLNTSIGYILTG 64 Query: 77 SPTVCSDISSEENNVMDFIST 97 + ++ N ST Sbjct: 65 QVDTGTQATTTITNESATGST 85 >gi|260655689|ref|ZP_05861162.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] gi|260629606|gb|EEX47800.1| toxin-antitoxin system, antitoxin component, Xre family [Jonquetella anthropi E3_33 E1] Length = 123 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 46/125 (36%), Gaps = 5/125 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R ++Q++L E ++ +Q E L +++ LE + + Sbjct: 4 GLRLRSLRKAHQLTQQQLAEVTEVSRIYIQALESNRRSPSMKLLHKLADALEVDPADLLE 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 P+ S E + P+ L++ ++ V + L+ + ++ + Sbjct: 64 EFPSERSGRLQLE----ELFQRPEELEIWYRSHKLTPRDV-AMVHRLIDAALADWQNEAK 118 Query: 136 IEEEC 140 E Sbjct: 119 SAENL 123 >gi|326204985|ref|ZP_08194836.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325984851|gb|EGD45696.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 206 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 27/59 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G R++ R I +SQE+LG+ LG+ + +E ++ ++E+ + Sbjct: 133 GIRLKRLRRIHNISQEELGKVLGVGRTAIANWETNQTEPTGENIKKLAELFRVTTDYLL 191 >gi|253579633|ref|ZP_04856902.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849134|gb|EES77095.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 74 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R MSQ++L E L I+ + YE G + L ++ + + + Sbjct: 7 QRIQDLRTDADMSQKQLSEILHISQRSYSHYETGSRNIPVEMLIRLANYYDISVDYLVGR 66 Query: 77 SPTVCSD 83 + + Sbjct: 67 TDKKEMN 73 >gi|228950520|ref|ZP_04112670.1| transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809156|gb|EEM55627.1| transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 116 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 47/116 (40%), Gaps = 11/116 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G R++ R L MSQ+ + + ++ V E G + + IS + Sbjct: 2 IENIIGIRVKEIRNSLAMSQQSFADAIEVSKGMVSLIESGKKKPSRETVSKISNLGNVSA 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVR 124 + +S N+ + S+ +L+ +I+ D ++ I+ +++ Sbjct: 62 DYVMGLSD---------YKNLNESQSSEVKTELHDMISKIEKLDEDKQKLILNMIK 108 >gi|261407406|ref|YP_003243647.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283869|gb|ACX65840.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] Length = 201 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 37/79 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+++ + +++ R +S +K+ E GI+ + + E+G + + + I+ L+ Sbjct: 19 PINLILANNLKILREQRKLSLDKVAEMTGISKTMLGQIERGESSPSITTVWKIANGLKLS 78 Query: 70 ISFFFDVSPTVCSDISSEE 88 S + + +S EE Sbjct: 79 FSSLINEPHSGTVVVSREE 97 >gi|168241225|ref|ZP_02666157.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168462878|ref|ZP_02696809.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194450536|ref|YP_002045707.1| Cro/CI family transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194408840|gb|ACF69059.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195633981|gb|EDX52333.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205339118|gb|EDZ25882.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 200 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 30/72 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ V +RI+ R MS ++L G++ + + E + L I+ + Sbjct: 16 STINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGV 75 Query: 69 PISFFFDVSPTV 80 ++ +V+ Sbjct: 76 SVADVVNVASEP 87 >gi|220916216|ref|YP_002491520.1| helix-turn-helix domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954070|gb|ACL64454.1| helix-turn-helix domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 410 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 36/117 (30%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R ++Q L +G+ + EKG R + L ++ L+ + Sbjct: 7 LGERIAFARKNANLTQADLAAKIGVARTTLVAVEKGERRPSNAELIKLAGFLKVSVHDLL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 +T + R ++++ L R E Sbjct: 67 REHAVTGEVSPRFRMTAPPGNATEANAVVKRLQSLGSRYAELEQLLGLRRIPAPLES 123 >gi|157959968|ref|YP_001500002.1| XRE family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157844968|gb|ABV85467.1| transcriptional regulator, XRE family [Shewanella pealeana ATCC 700345] Length = 69 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R +Q L E L ++ Q + EKG ++ + E PI F+ Sbjct: 3 NRLKVLRAERDWTQADLAEKLEVSRQTINAIEKGKYDPSLPLAFKVARLFEMPIEAIFED 62 Query: 77 SPTVCSD 83 V + Sbjct: 63 ETEVAIN 69 >gi|58426058|gb|AAW75095.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] Length = 466 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 22/145 (15%), Positives = 55/145 (37%), Gaps = 13/145 (8%) Query: 6 KIP--NPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 ++P + + +G R++ R G++Q +L L ++ + + E+ + + Q + Sbjct: 5 RMPQSHAQLRHQLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRPLTLAIQQRL 64 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKI 119 L + + D + +D G L ++ +V Q + Sbjct: 65 KATLGD-------LDGLLDLDDPAALVEPLDQSLRSLGHTLLPAELRALTGNLPQVAQAL 117 Query: 120 IELVRSIVSSEKKYRTIEEECMVEQ 144 ++L R+ ++ +E + VE Sbjct: 118 LDLHRAHQHLLERNAALELQIGVEH 142 >gi|30021440|ref|NP_833071.1| PbsX family transcriptional regulator [Bacillus cereus ATCC 14579] gi|206969324|ref|ZP_03230279.1| DNA-binding protein [Bacillus cereus AH1134] gi|218232223|ref|YP_002368049.1| DNA-binding protein [Bacillus cereus B4264] gi|29896994|gb|AAP10272.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC 14579] gi|206736365|gb|EDZ53523.1| DNA-binding protein [Bacillus cereus AH1134] gi|218160180|gb|ACK60172.1| DNA-binding protein [Bacillus cereus B4264] Length = 66 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R L M+QE L + +G+ + + EKG I++ L S I F Sbjct: 6 RIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDEIFIFE 65 Query: 78 P 78 Sbjct: 66 D 66 >gi|90425389|ref|YP_533759.1| XRE family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90107403|gb|ABD89440.1| transcriptional regulator, XRE family [Rhodopseudomonas palustris BisB18] Length = 84 Score = 42.9 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 23/75 (30%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ R +QE+ E G T Q V E+G L H++ L Sbjct: 7 VGRNFARLRKEKDFTQERFAEVSGFTQQYVSGLERGKRNPTVVTLFHLAAALGVSHVDLI 66 Query: 75 DVSPTVCSDISSEEN 89 + S Sbjct: 67 QPDEEAAGERSKAAR 81 >gi|327389117|gb|EGE87463.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] Length = 287 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + S++S+ + + + L + Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYDNLEYIYR 96 >gi|322390777|ref|ZP_08064288.1| cro/CI family transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321142532|gb|EFX37999.1| cro/CI family transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 169 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 9/114 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + F Sbjct: 9 GPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLFG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-----DVKVRQKIIELVR 124 S + + S E+N + ++ + I+ D + + ++ L R Sbjct: 69 TSKEIELEKSVLESNEY----SDKVSEILKAVKYIEHFLHTDGQYLEDLLYLTR 118 >gi|254823297|ref|ZP_05228298.1| transcriptional regulator [Mycobacterium intracellulare ATCC 13950] Length = 174 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 25/68 (36%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G++ E L + G+T + K E+ + + +++ L+ + F Sbjct: 5 LRAVRKQRGLTLEALAQQTGLTKSYLSKIERRRSTPSIAVALKVAKALDVDVGRLFSEEA 64 Query: 79 TVCSDISS 86 Sbjct: 65 AHEKITVE 72 >gi|295838058|ref|ZP_06824991.1| DNA-binding protein [Streptomyces sp. SPB74] gi|197699989|gb|EDY46922.1| DNA-binding protein [Streptomyces sp. SPB74] Length = 400 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 48/117 (41%), Gaps = 9/117 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS---- 71 G RI+ R ++Q+ L + G+++ V K EK + + I+ L ++ Sbjct: 16 GTRIKRLRQERHLTQKALADLAGLSYSTVTKTEKALIPLTPHVTACIARALRVDVAAITG 75 Query: 72 --FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN-RYFIQIDDVKVRQKIIELVRS 125 ++ ++ + +D ++ R + Q+D ++++ LVR+ Sbjct: 76 QPYYTELRQDELDVLIRPIREALDVYDLGADPDVHPRPYEQLDSET--EELLGLVRA 130 >gi|171060328|ref|YP_001792677.1| anaerobic benzoate catabolism transcriptional regulator [Leptothrix cholodnii SP-6] gi|170777773|gb|ACB35912.1| transcriptional regulator, XRE family with shikimate kinase activity [Leptothrix cholodnii SP-6] Length = 318 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 32/75 (42%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP + +G+R+R R GM+++ + ++ + + E G+ L ++ L+ Sbjct: 25 NPFLVALGERVRSLRARRGMTRKAVAIAADVSERHLANLEYGIGNASILVLLQVAGALQC 84 Query: 69 PISFFFDVSPTVCSD 83 ++ T + Sbjct: 85 SLAELIGDITTSTPE 99 >gi|160884331|ref|ZP_02065334.1| hypothetical protein BACOVA_02309 [Bacteroides ovatus ATCC 8483] gi|255691648|ref|ZP_05415323.1| transcriptional regulator, Cro/CI family [Bacteroides finegoldii DSM 17565] gi|156110070|gb|EDO11815.1| hypothetical protein BACOVA_02309 [Bacteroides ovatus ATCC 8483] gi|260622719|gb|EEX45590.1| transcriptional regulator, Cro/CI family [Bacteroides finegoldii DSM 17565] Length = 94 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G I+L R +SQ++L GI+ + E G S + I L+ P S+ Sbjct: 1 MDIGNAIKLLRKRKDISQKELSNLCGISANALCSIESGGTFPSKSTIAKICNALKIPESY 60 Query: 73 --FFDVSPTVCSDI 84 F +S + Sbjct: 61 LLLFSISEEDIPEN 74 >gi|149001557|ref|ZP_01826530.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|149006084|ref|ZP_01829813.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP18-BS74] gi|168490030|ref|ZP_02714229.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|168494685|ref|ZP_02718828.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|182683306|ref|YP_001835053.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|221231212|ref|YP_002510364.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|237649376|ref|ZP_04523628.1| putative DNA-binding protein [Streptococcus pneumoniae CCRI 1974] gi|237821593|ref|ZP_04597438.1| putative DNA-binding protein [Streptococcus pneumoniae CCRI 1974M2] gi|298230655|ref|ZP_06964336.1| putative DNA-binding protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|147760015|gb|EDK67004.1| transcriptional regulator, putative [Streptococcus pneumoniae SP14-BS69] gi|147762440|gb|EDK69401.1| gluconate 5-dehydrogenase [Streptococcus pneumoniae SP18-BS74] gi|182628640|gb|ACB89588.1| transcriptional regulator, putative [Streptococcus pneumoniae CGSP14] gi|183571579|gb|EDT92107.1| conserved domain protein [Streptococcus pneumoniae SP195] gi|183575410|gb|EDT95938.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|220673672|emb|CAR68163.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|327390749|gb|EGE89089.1| helix-turn-helix family protein [Streptococcus pneumoniae GA04375] gi|332075179|gb|EGI85649.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17570] gi|332076774|gb|EGI87236.1| helix-turn-helix family protein [Streptococcus pneumoniae GA17545] Length = 64 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R LG+SQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKELGISQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNSLFWK 61 Query: 77 SP 78 Sbjct: 62 ED 63 >gi|126727939|ref|ZP_01743764.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] gi|126702770|gb|EBA01878.1| DNA-binding protein, putative [Rhodobacterales bacterium HTCC2150] Length = 211 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 35/83 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R ++ +L ++ + K E G S LQ ++ L P+ Sbjct: 20 LEVAIGREVRAYRKQQNITVAELSGLTELSIGMLSKIENGNTSPSLSTLQTLANALAVPL 79 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + FF + ++ ++ Sbjct: 80 TAFFRQYEERRQAVHTKAGEGVE 102 >gi|29376794|ref|NP_815948.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|256960853|ref|ZP_05565024.1| predicted protein [Enterococcus faecalis Merz96] gi|29344259|gb|AAO82018.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|256951349|gb|EEU67981.1| predicted protein [Enterococcus faecalis Merz96] Length = 121 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 45/118 (38%), Gaps = 5/118 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G+ IR R+ ++Q++L + G+ + VQ EKG L + E L Sbjct: 1 MPEDSLKFLGRHIRAERVRCNLTQQELADQSGLAVKTVQDIEKGRKNPSYETLSRLIERL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + F S ++ + + + L + +++++L R Sbjct: 61 GISPNVLFQASNSIEDEELQRFMGKFQSCNRDNQQILLNTLDFLT-----EQLLDLQR 113 >gi|330819140|ref|YP_004348002.1| DNA-binding protein [Burkholderia gladioli BSR3] gi|327371135|gb|AEA62490.1| DNA-binding protein [Burkholderia gladioli BSR3] Length = 204 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 24/65 (36%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + VG+ I+ R ++ + L G++ + + E+ + ++ L Sbjct: 22 SIPPRVGETIQRLRNERKLTLDDLSRAAGVSKSMLSEIERDKANPTIAVAWRLTNALGIS 81 Query: 70 ISFFF 74 + F Sbjct: 82 LDELF 86 >gi|322804925|emb|CBZ02484.1| transcriptional regulator, XRE family [Clostridium botulinum H04402 065] Length = 130 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 1/94 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FD 75 ++ R G+SQ++LG L ++ Q + K+E G +L + + E + D Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDELVMD 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 V + N ++ I + + + + Sbjct: 65 VKAKESTKTEPLVMNRLETIIHSIDRENVKMYTK 98 >gi|313113972|ref|ZP_07799527.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623674|gb|EFQ07074.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 136 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 55/129 (42%), Gaps = 9/129 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R LG++Q G +GI + K+E GVN + + + + ++ + + Sbjct: 4 RLKLLRKTLGLNQVDFGTRIGIGGTAISKFESGVNAISDTLVLLVCREFNVNEAWLRNGT 63 Query: 78 PT----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR---QKIIELVRSIVSSE 130 +D+ +E + + G QL ++Q+ D R + + +L ++ +E Sbjct: 64 GEMFTHTSNDLVAELSETYHLGT--YGEQLLATYLQLSDADKRAVERFVSQLTANVQKAE 121 Query: 131 KKYRTIEEE 139 E+ Sbjct: 122 DAQSDACEK 130 >gi|257455556|ref|ZP_05620786.1| phage repressor [Enhydrobacter aerosaccus SK60] gi|257447022|gb|EEV22035.1| phage repressor [Enhydrobacter aerosaccus SK60] Length = 222 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R G++Q +L + G + E G N +++L ++E + + Sbjct: 5 IGSRVKKARKYAGLTQVELAKKSGSKQGAISDLESGRNE-SSTKLVEMAEAMGVSAKWLA 63 Query: 75 DVSPTV-CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + DI + +DFI ++Q Sbjct: 64 TGEGNMLDQDIKVPSISNVDFIPQKIRKAPVLNWVQAGHPA 104 >gi|237746118|ref|ZP_04576598.1| predicted protein [Oxalobacter formigenes HOxBLS] gi|229377469|gb|EEO27560.1| predicted protein [Oxalobacter formigenes HOxBLS] Length = 130 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 37/85 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KRI R L +SQ +L +G+T Q VQK+EK + L+ +++ L ++ Sbjct: 4 IAKRIEDCRHGLNISQSELARKIGVTPQAVQKWEKAKTVPRGATLRKLADALGVSPAYIQ 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 D + E ++I Sbjct: 64 FGISDPVPDYPAVEQEKAEYIVNKR 88 >gi|229109238|ref|ZP_04238837.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] gi|228674248|gb|EEL29493.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] Length = 404 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTAL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDEGEIVELIQ 74 >gi|229156698|ref|ZP_04284785.1| HTH-type transcriptional regulator ansR [Bacillus cereus ATCC 4342] gi|228626618|gb|EEK83358.1| HTH-type transcriptional regulator ansR [Bacillus cereus ATCC 4342] Length = 125 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 4/122 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R S ++ + LGI YE G L I+++ ++ + + Sbjct: 3 ERLSELRKNQNWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYILGR 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + + + L + ++ I VRS K Sbjct: 63 IEHSHPNKDVID---ITRLLNDPDPTLLIDGEALSTEEIID-FIAFVRSKRELSSKRIEN 118 Query: 137 EE 138 E Sbjct: 119 IE 120 >gi|227484822|ref|ZP_03915138.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227237182|gb|EEI87197.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 70 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G++QE+L + L ++ Q V E G I+ E I F Sbjct: 3 NRLEEIRKHKGITQEELAKILEVSRQTVGSLENGRYNPSIILAFKIARYFEMAIEDIFIY 62 Query: 77 SPTVCSDI 84 ++ Sbjct: 63 EEENVNEE 70 >gi|253988423|ref|YP_003039779.1| phage regulatory protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253988445|ref|YP_003039801.1| hypothetical protein PAU_00964 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638950|emb|CAR67565.1| similar to unknown protein of bacteriophage (similar to phag transcriptional repressor) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779873|emb|CAQ83034.1| putative phage regulatory protein [Photorhabdus asymbiotica] gi|253779895|emb|CAQ83056.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 130 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 33/64 (51%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI L R ++Q++L + LGI Q + YE G +V A+ L ++++L + Sbjct: 21 KELGARIALARKEQQLTQQQLADQLGIAQQTMAHYEGGRLKVSAALLPLLAQILNLSLDE 80 Query: 73 FFDV 76 + Sbjct: 81 LLGL 84 >gi|167756113|ref|ZP_02428240.1| hypothetical protein CLORAM_01633 [Clostridium ramosum DSM 1402] gi|237734098|ref|ZP_04564579.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167704105|gb|EDS18684.1| hypothetical protein CLORAM_01633 [Clostridium ramosum DSM 1402] gi|229382924|gb|EEO33015.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 76 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 31/66 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KRIR R ++Q++L E L ++ + +YE+G + L ++ E+ + + + Sbjct: 4 KRIRDLREDKDLTQKQLAEYLNVSQKSYSRYERGERTIDPEILSKLATFHETTVDYLIER 63 Query: 77 SPTVCS 82 + Sbjct: 64 TDDKTD 69 >gi|166033247|ref|ZP_02236076.1| hypothetical protein DORFOR_02972 [Dorea formicigenerans ATCC 27755] gi|166027604|gb|EDR46361.1| hypothetical protein DORFOR_02972 [Dorea formicigenerans ATCC 27755] Length = 354 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 41/96 (42%), Gaps = 3/96 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ I R M+Q +L E + +T + + ++E+G+ L+ +++VL + + Sbjct: 7 GQFIAGIRKEKKMTQAELAEKIHVTDKAISRWERGLGFPDIQTLEPLAQVLGISV---LE 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + + + + + + ++ + I Sbjct: 64 LMRSEKKKPTGDMDTTETQYTQKEVAEMLQNADDIS 99 >gi|166032930|ref|ZP_02235759.1| hypothetical protein DORFOR_02651 [Dorea formicigenerans ATCC 27755] gi|167766611|ref|ZP_02438664.1| hypothetical protein CLOSS21_01117 [Clostridium sp. SS2/1] gi|218132240|ref|ZP_03461044.1| hypothetical protein BACPEC_00097 [Bacteroides pectinophilus ATCC 43243] gi|225026928|ref|ZP_03716120.1| hypothetical protein EUBHAL_01184 [Eubacterium hallii DSM 3353] gi|323487598|ref|ZP_08092888.1| hypothetical protein HMPREF9474_04639 [Clostridium symbiosum WAL-14163] gi|166027287|gb|EDR46044.1| hypothetical protein DORFOR_02651 [Dorea formicigenerans ATCC 27755] gi|167711734|gb|EDS22313.1| hypothetical protein CLOSS21_01117 [Clostridium sp. SS2/1] gi|217992849|gb|EEC58849.1| hypothetical protein BACPEC_00097 [Bacteroides pectinophilus ATCC 43243] gi|224955739|gb|EEG36948.1| hypothetical protein EUBHAL_01184 [Eubacterium hallii DSM 3353] gi|291526845|emb|CBK92431.1| Helix-turn-helix [Eubacterium rectale M104/1] gi|291535072|emb|CBL08184.1| Helix-turn-helix [Roseburia intestinalis M50/1] gi|291558633|emb|CBL37433.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] gi|323399097|gb|EGA91505.1| hypothetical protein HMPREF9474_04639 [Clostridium symbiosum WAL-14163] Length = 209 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ ++ + QL + +D + ++ +++ Sbjct: 70 RGETDEYETDITDKKELQIRDAMGDILKQLPLDLSKKEDAFSKDLLLLMLKQ 121 >gi|22537084|ref|NP_687935.1| Tn916, transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|77411091|ref|ZP_00787444.1| Tn916, transcriptional regulator, putative [Streptococcus agalactiae CJB111] gi|77414301|ref|ZP_00790459.1| putative Tn916, transcriptional regulator [Streptococcus agalactiae 515] gi|146318574|ref|YP_001198286.1| Tn916, transcriptional regulator, [Streptococcus suis 05ZYH33] gi|146320773|ref|YP_001200484.1| Tn916, transcriptional regulator [Streptococcus suis 98HAH33] gi|169834110|ref|YP_001694717.1| transcriptional regulator, putative [Streptococcus pneumoniae Hungary19A-6] gi|221232085|ref|YP_002511238.1| conjugative transposon regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225856788|ref|YP_002738299.1| transcriptional regulator, putative [Streptococcus pneumoniae P1031] gi|225861767|ref|YP_002743276.1| transcriptional regulator, putative [Streptococcus pneumoniae Taiwan19F-14] gi|227484763|ref|ZP_03915079.1| Tn916 transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227554333|ref|ZP_03984380.1| Tn916, transcriptional regulator [Enterococcus faecalis HH22] gi|229546615|ref|ZP_04435340.1| Tn916, transcriptional regulator [Enterococcus faecalis TX1322] gi|253751699|ref|YP_003024840.1| DNA-binding protein [Streptococcus suis SC84] gi|253755105|ref|YP_003028245.1| DNA-binding protein [Streptococcus suis BM407] gi|255974496|ref|ZP_05425082.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256960282|ref|ZP_05564453.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|257077704|ref|ZP_05572065.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|257086320|ref|ZP_05580681.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|257090937|ref|ZP_05585298.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257868791|ref|ZP_05648444.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|260562516|ref|ZP_05833025.1| conserved hypothetical protein [Enterococcus faecium C68] gi|270293249|ref|ZP_06199460.1| putative , transcriptional regulator [Streptococcus sp. M143] gi|288905874|ref|YP_003431096.1| transcriptional regulator (Tn916) [Streptococcus gallolyticus UCN34] gi|289450382|ref|YP_003475482.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|293382149|ref|ZP_06628092.1| putative transcriptional regulator [Enterococcus faecalis R712] gi|293388539|ref|ZP_06633043.1| putative, transcriptional regulator [Enterococcus faecalis S613] gi|296451806|ref|ZP_06893528.1| Tn916, transcriptional regulator [Clostridium difficile NAP08] gi|296881116|ref|ZP_06905053.1| Tn916, transcriptional regulator [Clostridium difficile NAP07] gi|297587369|ref|ZP_06946014.1| Tn916, transcriptional regulator [Finegoldia magna ATCC 53516] gi|298229321|ref|ZP_06963002.1| DNA-binding protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255929|ref|ZP_06979515.1| DNA-binding protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503719|ref|YP_003725659.1| Tn916 transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|300814654|ref|ZP_07094905.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300862286|ref|ZP_07108366.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|304440293|ref|ZP_07400183.1| Tn916, transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|306832042|ref|ZP_07465197.1| Tn916 transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|307127288|ref|YP_003879319.1| transcriptional regulator [Streptococcus pneumoniae 670-6B] gi|307269838|ref|ZP_07551168.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|307275114|ref|ZP_07556268.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307284032|ref|ZP_07564202.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|307287209|ref|ZP_07567280.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|309775000|ref|ZP_07670015.1| putative , transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] gi|309804764|ref|ZP_07698828.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|309806275|ref|ZP_07700288.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 03V1-b] gi|312873214|ref|ZP_07733270.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|312905755|ref|ZP_07764777.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|312909049|ref|ZP_07767909.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|312952184|ref|ZP_07771062.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|313884628|ref|ZP_07818386.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|313890699|ref|ZP_07824325.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313891955|ref|ZP_07825556.1| DNA-binding helix-turn-helix protein [Dialister microaerophilus UPII 345-E] gi|314948672|ref|ZP_07852046.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|319893400|ref|YP_004150275.1| Tn916-associated transcriptional regulator [Staphylococcus pseudintermedius HKU10-03] gi|322376628|ref|ZP_08051121.1| putative , transcriptional regulator [Streptococcus sp. M334] gi|322385326|ref|ZP_08058971.1| Tn916, transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|322388207|ref|ZP_08061811.1| Tn916, transcriptional regulator [Streptococcus infantis ATCC 700779] gi|325911687|ref|ZP_08174094.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|329122045|ref|ZP_08250653.1| Tn916 transcriptional regulator [Dialister micraerophilus DSM 19965] gi|13274510|gb|AAK17954.1|AF329848_6 ORF9 [Clostridium perfringens] gi|22533943|gb|AAM99807.1|AE014233_24 Tn916, transcriptional regulator, putative [Streptococcus agalactiae 2603V/R] gi|67043701|gb|AAY63944.1| hypothetical protein [Streptococcus cristatus] gi|77159646|gb|EAO70799.1| putative Tn916, transcriptional regulator [Streptococcus agalactiae 515] gi|77162814|gb|EAO73772.1| Tn916, transcriptional regulator, putative [Streptococcus agalactiae CJB111] gi|88601077|gb|ABD46535.1| putative transcriptional regulator [Acinetobacter junii] gi|145689380|gb|ABP89886.1| Tn916, transcriptional regulator, putative [Streptococcus suis 05ZYH33] gi|145691579|gb|ABP92084.1| Tn916, transcriptional regulator, putative [Streptococcus suis 98HAH33] gi|148925343|gb|ABR19667.1| putative transcriptional regulator [Streptococcus suis SC84] gi|154799911|emb|CAO82962.1| ORF9 protein [Streptococcus pneumoniae] gi|160960270|emb|CAP45540.1| hypothetical protein [Streptococcus pneumoniae] gi|168996612|gb|ACA37224.1| transcriptional regulator, putative [Streptococcus pneumoniae Hungary19A-6] gi|169636234|dbj|BAG12504.1| hypothetical protein [Streptococcus pneumoniae] gi|183217313|gb|ACC59232.1| putative transcriptional regulator [Streptococcus pneumoniae] gi|209969460|dbj|BAG80631.1| putative transcriptional regulator [Streptococcus parauberis] gi|218473445|emb|CAV31155.1| hypothetical protein [Streptococcus pneumoniae] gi|220674546|emb|CAR69108.1| putative conjugative transposon regulatory protein [Streptococcus pneumoniae ATCC 700669] gi|225725715|gb|ACO21567.1| transcriptional regulator, putative [Streptococcus pneumoniae P1031] gi|225728182|gb|ACO24033.1| transcriptional regulator, putative [Streptococcus pneumoniae Taiwan19F-14] gi|227176543|gb|EEI57515.1| Tn916, transcriptional regulator [Enterococcus faecalis HH22] gi|227237245|gb|EEI87260.1| Tn916 transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|229308272|gb|EEN74259.1| Tn916, transcriptional regulator [Enterococcus faecalis TX1322] gi|251815988|emb|CAZ51605.1| putative DNA-binding protein [Streptococcus suis SC84] gi|251817569|emb|CAZ55316.1| DNA-binding protein [Streptococcus suis BM407] gi|255967368|gb|EET97990.1| conserved hypothetical protein [Enterococcus faecalis T2] gi|256950778|gb|EEU67410.1| conserved hypothetical protein [Enterococcus faecalis Merz96] gi|256985734|gb|EEU73036.1| conserved hypothetical protein [Enterococcus faecalis JH1] gi|256994350|gb|EEU81652.1| conserved hypothetical protein [Enterococcus faecalis D6] gi|256999749|gb|EEU86269.1| conserved hypothetical protein [Enterococcus faecalis CH188] gi|257802955|gb|EEV31777.1| conserved hypothetical protein [Enterococcus gallinarum EG2] gi|259906616|gb|ACW84390.1| putative transcriptional regulator [Streptococcus pneumoniae] gi|260073116|gb|EEW61462.1| conserved hypothetical protein [Enterococcus faecium C68] gi|270279228|gb|EFA25074.1| putative , transcriptional regulator [Streptococcus sp. M143] gi|283470172|emb|CAQ49383.1| transcriptional regulator, putative [Staphylococcus aureus subsp. aureus ST398] gi|288732600|emb|CBI14172.1| putative transcriptional regulator (Tn916) [Streptococcus gallolyticus UCN34] gi|289184929|gb|ADC91354.1| DNA-binding helix-turn-helix protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|291080432|gb|EFE17796.1| putative transcriptional regulator [Enterococcus faecalis R712] gi|291082143|gb|EFE19106.1| putative, transcriptional regulator [Enterococcus faecalis S613] gi|296259364|gb|EFH06237.1| Tn916, transcriptional regulator [Clostridium difficile NAP08] gi|296427885|gb|EFH13795.1| Tn916, transcriptional regulator [Clostridium difficile NAP07] gi|297575350|gb|EFH94069.1| Tn916, transcriptional regulator [Finegoldia magna ATCC 53516] gi|298239314|gb|ADI70445.1| Tn916 transcriptional regulator [Streptococcus pneumoniae TCH8431/19A] gi|300511273|gb|EFK38522.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300848811|gb|EFK76568.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|304371342|gb|EFM24958.1| Tn916, transcriptional regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304425968|gb|EFM29085.1| Tn916 transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|306484350|gb|ADM91219.1| transcriptional regulator, putative [Streptococcus pneumoniae 670-6B] gi|306501807|gb|EFM71098.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306503403|gb|EFM72652.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306508232|gb|EFM77348.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|306513948|gb|EFM82550.1| helix-turn-helix protein [Enterococcus faecalis TX4248] gi|308165874|gb|EFO68093.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 09V1-c] gi|308167259|gb|EFO69425.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 03V1-b] gi|308917218|gb|EFP62943.1| putative , transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53] gi|310628234|gb|EFQ11517.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 512] gi|310629840|gb|EFQ13123.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|311091225|gb|EFQ49613.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|311290611|gb|EFQ69167.1| helix-turn-helix protein [Enterococcus faecalis DAPTO 516] gi|312620138|gb|EFR31569.1| DNA-binding helix-turn-helix protein [Eremococcus coleocola ACS-139-V-Col8] gi|313119598|gb|EFR42789.1| DNA-binding helix-turn-helix protein [Dialister microaerophilus UPII 345-E] gi|313120947|gb|EFR44060.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|313644925|gb|EFS09505.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|315027171|gb|EFT39103.1| helix-turn-helix protein [Enterococcus faecalis TX2137] gi|315032849|gb|EFT44781.1| helix-turn-helix protein [Enterococcus faecalis TX0017] gi|315154507|gb|EFT98523.1| helix-turn-helix protein [Enterococcus faecalis TX0031] gi|315154982|gb|EFT98998.1| helix-turn-helix protein [Enterococcus faecalis TX0043] gi|315158720|gb|EFU02737.1| helix-turn-helix protein [Enterococcus faecalis TX0312] gi|315163454|gb|EFU07471.1| helix-turn-helix protein [Enterococcus faecalis TX0645] gi|315164561|gb|EFU08578.1| helix-turn-helix protein [Enterococcus faecalis TX1302] gi|315174520|gb|EFU18537.1| helix-turn-helix protein [Enterococcus faecalis TX1346] gi|315574464|gb|EFU86655.1| helix-turn-helix protein [Enterococcus faecalis TX0309B] gi|315582879|gb|EFU95070.1| helix-turn-helix protein [Enterococcus faecalis TX0309A] gi|317163096|gb|ADV06639.1| Tn916-associated transcriptional regulator [Staphylococcus pseudintermedius HKU10-03] gi|321140879|gb|EFX36380.1| Tn916, transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321156876|emb|CBW38864.1| putative conjugative transposon regulatory protein [Streptococcus pneumoniae] gi|321157354|emb|CBW39335.1| putative conjugative transposon regulatory protein [Streptococcus pneumoniae] gi|321157374|emb|CBW39354.1| putative conjugative transposon regulatory protein [Streptococcus pneumoniae] gi|321157399|emb|CBW39378.1| putative conjugative transposon regulatory protein [Streptococcus pneumoniae] gi|321157465|emb|CBW39443.1| putative conjugative transposon regulatory protein [Streptococcus pneumoniae] gi|321270585|gb|EFX53500.1| Tn916, transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321282435|gb|EFX59442.1| putative , transcriptional regulator [Streptococcus sp. M334] gi|325476453|gb|EGC79612.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 143-D] gi|325689200|gb|EGD31207.1| Tn916 transcriptional regulator [Streptococcus sanguinis SK115] gi|327466852|gb|EGF12368.1| Tn916 transcriptional regulator [Dialister micraerophilus DSM 19965] gi|327474199|gb|EGF19607.1| Tn916 transcriptional regulator [Streptococcus sanguinis SK408] gi|329577589|gb|EGG59022.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] gi|332075494|gb|EGI85963.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41301] Length = 117 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 1/106 (0%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D G I+ R+ G+++E++G + I + + E L + Sbjct: 2 RKKEDKYDFRAFGLAIKEARLKRGLTREQVGALIEIDPRYLTNIENKGQHPSIQVLYDLV 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +L + FF + + + T L L Sbjct: 62 SLLHVSVDEFFLPANNLVKSTRRLQIEKYMDSFTDKELSLMESLAS 107 >gi|308270112|emb|CBX26724.1| hypothetical protein N47_A07530 [uncultured Desulfobacterium sp.] Length = 510 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 47/131 (35%), Gaps = 14/131 (10%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R MSQ+KL E + I+ +++Q +E +R L +SE P+ Sbjct: 20 LGHTIKEYRQWRKMSQQKLSESIQISVRELQNWEADRHRARIENLHDLSEFTGIPMQALI 79 Query: 75 DVSPTVCSDISSEENNVMDFIST--------------PDGLQLNRYFIQIDDVKVRQKII 120 ++ S ++ + +I I + I+ Sbjct: 80 SLNADQPVWYSLDKRQFKYSLIEEDQFSSRELFRYNGKSADDFLIKYIPITTDRQINIIL 139 Query: 121 ELVRSIVSSEK 131 R I S+E+ Sbjct: 140 SCHRDIYSTER 150 >gi|296277306|ref|ZP_06859813.1| phage repressor [Staphylococcus aureus subsp. aureus MR1] Length = 107 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 12/101 (11%), Positives = 38/101 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++ +G+ + +YE G ++ + I+ L+ + Sbjct: 6 EIGKLIKQLRKENNVNLTDFATKIGVNKSTLSRYENGSRKIPMEDIAEIANALKVTPEYL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + +++ ++ ++ + ++ Y I + Sbjct: 66 LLKNRQPENEVQHRAAHLEGELTDDEWQRVLDYADYIRSKR 106 >gi|240139351|ref|YP_002963826.1| hypothetical protein MexAM1_META1p2796 [Methylobacterium extorquens AM1] gi|240009323|gb|ACS40549.1| conserved hypothetical protein [Methylobacterium extorquens AM1] Length = 87 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R+ G+SQE+L GI V + E+G V S L+ ++ L P++ Sbjct: 7 IGWNLRRLRVAQGLSQERLALAAGIDRAYVGRVERGSENVTISTLEAMARALAVPVAHLL 66 Query: 75 DVSPTVCSDISS 86 + Sbjct: 67 VEPDGEAQRPAP 78 >gi|219670548|ref|YP_002460983.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540808|gb|ACL22547.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 140 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 1/79 (1%) Query: 13 INVGKRIRLRRMILGMSQEKL-GECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G RI+ R +S L I+ + + E G A + IS Sbjct: 8 KALGTRIKQLRKNGKLSLADLSRHLPSISRANLGRIENGEVMPSAIFIYEISSFFNVSAD 67 Query: 72 FFFDVSPTVCSDISSEENN 90 + + + E+ Sbjct: 68 WLLTGNTPALPIYLNAEHE 86 >gi|170754290|ref|YP_001780243.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|169119502|gb|ACA43338.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] Length = 136 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 1/94 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FD 75 ++ R G+SQ++LG L ++ Q + K+E G +L + + E + D Sbjct: 5 NKLYSLRKQKGLSQDELGSKLNVSRQTISKWELGETTPELEKLIALGDFFEISLDELVMD 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 V N ++ I + + + + Sbjct: 65 VKAKESVKTEPLVMNRLETIIDSIDGENVKMYTK 98 >gi|167757680|ref|ZP_02429807.1| hypothetical protein CLOSCI_00009 [Clostridium scindens ATCC 35704] gi|167664700|gb|EDS08830.1| hypothetical protein CLOSCI_00009 [Clostridium scindens ATCC 35704] Length = 76 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 24/63 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R +SQ+ + + LGI +YE G + + + + + ++ Sbjct: 14 RLRALREDSDLSQKTIADYLGIGQTTYSQYELGKRSMPVEYIIRLCQFYNVSADYMLGLT 73 Query: 78 PTV 80 Sbjct: 74 NEK 76 >gi|167747456|ref|ZP_02419583.1| hypothetical protein ANACAC_02177 [Anaerostipes caccae DSM 14662] gi|317471184|ref|ZP_07930554.1| hypothetical protein HMPREF1011_00902 [Anaerostipes sp. 3_2_56FAA] gi|167652818|gb|EDR96947.1| hypothetical protein ANACAC_02177 [Anaerostipes caccae DSM 14662] gi|316901331|gb|EFV23275.1| hypothetical protein HMPREF1011_00902 [Anaerostipes sp. 3_2_56FAA] Length = 69 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R ++Q +L E +G+T Q + E G + I++ I F Sbjct: 4 RIQELRKDQKVTQMELAESVGVTRQTIISLENGRYKASLVLAHKIAQFFGVTIEDIFIFD 63 Query: 78 PTVCS 82 + Sbjct: 64 QEEEN 68 >gi|149202477|ref|ZP_01879449.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149143759|gb|EDM31793.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 215 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 31/74 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R ++ +L ++ + K E G + LQ ++ L P+ Sbjct: 27 LEVAIGREVRAYRKKQNITVAELSNMTELSIGMLSKIENGNTSPSLTTLQTLAHALSVPL 86 Query: 71 SFFFDVSPTVCSDI 84 + FF + Sbjct: 87 TAFFKEYEERREAV 100 >gi|118578914|ref|YP_900164.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118501624|gb|ABK98106.1| transcriptional regulator, MerR family [Pelobacter propionicus DSM 2379] Length = 192 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 8/77 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + +G +I R LG+++E+L E + + E+G + L Sbjct: 1 MTDRNR--------IGDKITTIRESLGLTREQLAERCDCSETVIAGLEQGELAPSLTPLI 52 Query: 61 HISEVLESPISFFFDVS 77 I+ L + D Sbjct: 53 KITRTLGVRLGTLLDDD 69 >gi|50955531|ref|YP_062819.1| hypothetical protein Lxx19990 [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952013|gb|AAT89714.1| conserved hypothetical protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 116 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 1/88 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR R+ +GMSQE + + + E+G + ++ L+ + Sbjct: 13 GQRIRQARLAIGMSQEDIANLAAMHVTNYGRVERGEANSELHTIVRLATALDVDPAGLVQ 72 Query: 76 VS-PTVCSDISSEENNVMDFISTPDGLQ 102 +V DF+ + + Sbjct: 73 GLYGDGMLPDREHAYSVTDFLEAREAAE 100 >gi|315650501|ref|ZP_07903570.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315487239|gb|EFU77552.1| XRE family transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 79 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 27/63 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I R LG+SQ +LG+ +G++ + + E G I+ L + FD+ Sbjct: 5 IERYRKPLGLSQHRLGKKVGVSRIAINRIETGKVTPSLRLANDIANALGVCLYDIFDLDD 64 Query: 79 TVC 81 T Sbjct: 65 TGK 67 >gi|302879146|ref|YP_003847710.1| helix-turn-helix domain-containing protein [Gallionella capsiferriformans ES-2] gi|302581935|gb|ADL55946.1| helix-turn-helix domain protein [Gallionella capsiferriformans ES-2] Length = 117 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 39/94 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I RR L +Q +L E +G+ + V ++E+G N RL+ ++E L+ P+ Sbjct: 11 ANIAERRKKLNWTQAELAERIGVDTETVSRFERGSNLPSLHRLEKLAEALKIPLYKLVAA 70 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 S D S M ++ D Q+ Sbjct: 71 SSPRHDDQSFILEEWMSELTPKDREFAMNTLKQL 104 >gi|300869668|ref|YP_003784539.1| putative transcriptional regulator [Brachyspira pilosicoli 95/1000] gi|300687367|gb|ADK30038.1| putative transcriptional regulator [Brachyspira pilosicoli 95/1000] Length = 141 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 41/104 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RIR+ R + + + I+ + +Q E G + + L I++VL PIS Sbjct: 37 YIGSRIRIVRKSQNRTISYIADMAKISPKYLQGVEVGKRNISITNLNKIAKVLNIPISLL 96 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + ++ + +L I+D++ + Sbjct: 97 LCNEEVSDIAKNEKLLSIAMKLKDYSIEELENMDNIINDIRKIE 140 >gi|239983769|ref|ZP_04706293.1| transcriptional regulator [Streptomyces albus J1074] gi|291455574|ref|ZP_06594964.1| transcriptional regulator [Streptomyces albus J1074] gi|291358523|gb|EFE85425.1| transcriptional regulator [Streptomyces albus J1074] Length = 200 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 33/73 (45%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D V KRIR R+ G S E+L ++ + + E G R+ +L ++ L++ Sbjct: 6 DELDGLVRKRIRALRLAQGWSLEELAGRANLSQSSLSRIENGRRRLALDQLVTLARALDT 65 Query: 69 PISFFFDVSPTVC 81 + + + Sbjct: 66 TLDQLVETASDDV 78 >gi|257067633|ref|YP_003153888.1| transcriptional regulator [Brachybacterium faecium DSM 4810] gi|256558451|gb|ACU84298.1| transcriptional regulator [Brachybacterium faecium DSM 4810] Length = 186 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 11/70 (15%), Positives = 30/70 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R+ G+S +L ++ + + E G R+ +L +++ L++ + + Sbjct: 14 QRLRALRLAQGLSLAELAARAHLSQSTLSRIENGQRRLALDQLVNLARALDTGLDELVEE 73 Query: 77 SPTVCSDISS 86 + Sbjct: 74 QEERVVSNAE 83 >gi|256423820|ref|YP_003124473.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038728|gb|ACU62272.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 193 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 40/117 (34%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + RI+ +R ++ + L + ++ + + E L I L Sbjct: 1 MKEDTLVQISNRIKEKRREKNITVQDLADRAKVSKGLISQIENSRTIPSLIVLIDIIRAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 E ++ FF T D+ + ++ +I V + +++V Sbjct: 61 EIDLNVFFKDISTTSEQPLVLVKKPADYDPFEKEDAIGFFYKRIFTQSVNKGTVDIV 117 >gi|256377098|ref|YP_003100758.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921401|gb|ACU36912.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 188 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 8/111 (7%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D V KR+R R+ G S + L ++ + + E G R+ +L +++ L++ + Sbjct: 8 LDSLVRKRVRALRLAQGWSLDDLATRAKLSPSTLSRIENGQRRLALDQLVTLAKALDTSL 67 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + T D+ + + + L+ + I RQ++++ Sbjct: 68 DQLVE---TAAEDVVTSPVHDPSHQALRWALRADPGMSVI-----RQRLVD 110 >gi|222151193|ref|YP_002560347.1| hypothetical protein MCCL_0944 [Macrococcus caseolyticus JCSC5402] gi|222120316|dbj|BAH17651.1| hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 189 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 27/73 (36%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +K +G+RI+ R G+S + GE G V +E RL+ I Sbjct: 81 EKQKNIKNDARIIGQRIKNIRRSKGLSMREFGEYFGAQSGVVSNWENAKQTPNRKRLKQI 140 Query: 63 SEVLESPISFFFD 75 +E + D Sbjct: 141 AEFAGITVEELTD 153 Score = 34.4 bits (77), Expect = 5.4, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G++I+ R+ LGM+ + GE + + V ++EKG + RL+ I+E+ + Sbjct: 7 KAIGRKIQSIRLNLGMNTREFGEEILNSSDSLVSRWEKGKSVPRQDRLKRIAELGNITVD 66 Query: 72 FFFDVSP 78 Sbjct: 67 ELVTTLD 73 >gi|169830949|ref|YP_001716931.1| XRE family transcriptional regulator [Candidatus Desulforudis audaxviator MP104C] gi|169637793|gb|ACA59299.1| transcriptional regulator, XRE family [Candidatus Desulforudis audaxviator MP104C] Length = 83 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R R+ G++Q +L +GI+ EKG I+ VL + F Sbjct: 8 LRSVRLRAGLTQAELARRVGISRTAYTNIEKGHKHPSLVTALRIARVLNEHVEDLFADE 66 >gi|254975129|ref|ZP_05271601.1| putative phage repressor [Clostridium difficile QCD-66c26] gi|255314256|ref|ZP_05355839.1| putative phage repressor [Clostridium difficile QCD-76w55] gi|255516935|ref|ZP_05384611.1| putative phage repressor [Clostridium difficile QCD-97b34] gi|255650038|ref|ZP_05396940.1| putative phage repressor [Clostridium difficile QCD-37x79] gi|306519573|ref|ZP_07405920.1| putative phage repressor [Clostridium difficile QCD-32g58] Length = 113 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 9/65 (13%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLG------ITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 G+R + R ++Q++L + +YE + + L++ ++ + Sbjct: 5 GERFKQLREEKKLTQDELVSKFNKVYFTSFNKSTISQYENNKRKPEINILENWADFFDVS 64 Query: 70 ISFFF 74 I + Sbjct: 65 IDYLL 69 >gi|45476502|ref|NP_995417.1| putative transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|45357213|gb|AAS58608.1| putative transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] Length = 118 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 7/117 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGI----TFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V KR++ R G+SQEKL E +G+ ++ YE G + +++VL P Sbjct: 1 MVPKRLKEAREAAGLSQEKLSELVGVEGVNPRSRMSNYEAGRFAPPFEFVCRVADVLGYP 60 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 +F+ V+ + + + + + Q++D R+ + +L + Sbjct: 61 EYYFYIVNDVTAKLLLRMHRGEQN-LHEDIEFEAKKMAEQLEDA--RKLVAQLTECL 114 >gi|329888372|ref|ZP_08266970.1| pvuIIC [Brevundimonas diminuta ATCC 11568] gi|328846928|gb|EGF96490.1| pvuIIC [Brevundimonas diminuta ATCC 11568] Length = 73 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R LG+SQE+L + V E G + L+ ++ L Sbjct: 7 LGRNIRRHRNALGISQEELAFRADMKRSYVSGIELGSRKPSVEALERLAIALGVDPRILL 66 Query: 75 DVS 77 + Sbjct: 67 EPD 69 >gi|322377175|ref|ZP_08051667.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] gi|321281888|gb|EFX58896.1| putative transcriptional regulator PlcR [Streptococcus sp. M334] Length = 287 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 1/94 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ RL+R L +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRLKRKELRLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + S++S+ + + + L + Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYDNLEYIYR 96 >gi|319744195|gb|EFV96562.1| XRE family transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 129 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/120 (14%), Positives = 44/120 (36%), Gaps = 8/120 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R ++Q+++ E LGI+ +E+GV + ++ + + Sbjct: 17 ERLKTLRKQAHLTQKEIAEKLGISQPAYGDWERGVKMPTHENSKKLARLFNITLDTLMGN 76 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 S+ + S + F R+++IE ++ + +K + Sbjct: 77 QEVDEEIDLSDVEMLFRTTSDGMTEEEKAVF--------RKELIEFMKERKKAFEKDKNS 128 >gi|269967853|ref|ZP_06181897.1| hypothetical protein VMC_33270 [Vibrio alginolyticus 40B] gi|269827558|gb|EEZ81848.1| hypothetical protein VMC_33270 [Vibrio alginolyticus 40B] Length = 112 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 4/81 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R +SQ+ LG +G+ + +YE+ + L+ I++ L P+++ Sbjct: 9 ARLKHARKQANLSQKALGIRIGMDDSSASARMNQYERERHTPDVKTLKLIADELNVPLNY 68 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF + D Sbjct: 69 FFCEDEITAELAVNLHKLSND 89 >gi|229105775|ref|ZP_04236404.1| hypothetical protein bcere0019_49010 [Bacillus cereus Rock3-28] gi|229118664|ref|ZP_04248016.1| hypothetical protein bcere0017_49290 [Bacillus cereus Rock1-3] gi|228664856|gb|EEL20346.1| hypothetical protein bcere0017_49290 [Bacillus cereus Rock1-3] gi|228677664|gb|EEL31912.1| hypothetical protein bcere0019_49010 [Bacillus cereus Rock3-28] Length = 65 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 5 NKIKELRKQNHITQVEMAKVMQVTRQTIVAIENHHYNPSLELSLKIAKYFGMKVEEIFTL 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|225863781|ref|YP_002749159.1| transcriptional regulator [Bacillus cereus 03BB102] gi|225789739|gb|ACO29956.1| transcriptional regulator [Bacillus cereus 03BB102] Length = 116 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 47/118 (39%), Gaps = 7/118 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R+ M+QE+ G+ + +T V K+E G G ++ I++ P+++ + + Sbjct: 6 RIKQIRIDNKMNQEQFGKEVDLTKGTVSKFENGKAFPGRETIEKIAKRFNVPVNYLYGEN 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S + + + + + ++++ + +++ K Sbjct: 66 KDDNSIDDKYKKF-------KEIMDWLEPLPKDKEDIALEQMLAIAQALSKHHNKTEK 116 >gi|218290296|ref|ZP_03494442.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239651|gb|EED06843.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 223 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 11/134 (8%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + V +R R G S +L G+ + + E G + L ++ L P Sbjct: 37 IMKIVSNNLRTLRQARGWSISELERRSGVAKGTISQLESGYGNPTVATLWSLASALSVPF 96 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 S + + E + + T + I+ I E+V + + Sbjct: 97 SDLIQAAKET--ESVHESPVLAEPSGTMRFVDRVTMEGMIE-------IYEMV--LSKDD 145 Query: 131 KKYRTIEEECMVEQ 144 ++ ++E Sbjct: 146 ERVSEAHPLGIMEH 159 >gi|16765008|ref|NP_460623.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|168230089|ref|ZP_02655147.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168260130|ref|ZP_02682103.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194471773|ref|ZP_03077757.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197264385|ref|ZP_03164459.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|204927706|ref|ZP_03218907.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|16420191|gb|AAL20582.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194458137|gb|EDX46976.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197242640|gb|EDY25260.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|204323048|gb|EDZ08244.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205335305|gb|EDZ22069.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205350683|gb|EDZ37314.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261246856|emb|CBG24672.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993597|gb|ACY88482.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158192|emb|CBW17690.1| conserved hypothetical DNA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912655|dbj|BAJ36629.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224291|gb|EFX49354.1| Putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129933|gb|ADX17363.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988551|gb|AEF07534.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 200 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 30/72 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ V +RI+ R MS ++L G++ + + E + L I+ + Sbjct: 16 STINEAVSQRIKQFRSQKKMSLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGV 75 Query: 69 PISFFFDVSPTV 80 ++ +V+ Sbjct: 76 SVADVVNVASEP 87 >gi|116326508|ref|YP_794188.1| XRE family transcriptional regulator [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116098007|gb|ABJ63157.1| Transcriptional regulator, xre family [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 204 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 32/72 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K ++ R++ +SQ +L L ++ + + +E N + IS+VL+ + Sbjct: 5 KSLKELRLLHELSQTQLARKLNVSPKTISNWENERNLPDIELIIKISKVLDVTLDELITG 64 Query: 77 SPTVCSDISSEE 88 + + + + + Sbjct: 65 NIQLENKLIKDS 76 >gi|291484905|dbj|BAI85980.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195] Length = 113 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G+RI+ R G S +L E G+ + E+ L+ +S VL+ + Sbjct: 4 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 63 Query: 74 FDVSPTVCSDISSEEN 89 D D + Sbjct: 64 LDEKHETEYDGQLDSE 79 >gi|288904901|ref|YP_003430123.1| transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] gi|288731627|emb|CBI13182.1| putative transcriptional regulator, Cro/CI family [Streptococcus gallolyticus UCN34] Length = 71 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 24/67 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q +L + ++ Q + E+ I+ + P+ F + Sbjct: 5 NRLKELRARDGLNQTQLAKLAKVSRQTISLLERNEYTPSVIIALRIAHIFNEPVENVFSL 64 Query: 77 SPTVCSD 83 Sbjct: 65 DEEGEKG 71 >gi|262282190|ref|ZP_06059959.1| transcription regulator [Streptococcus sp. 2_1_36FAA] gi|262262644|gb|EEY81341.1| transcription regulator [Streptococcus sp. 2_1_36FAA] Length = 71 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 28/70 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R MSQ +L + +G++ Q + E ++++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLAKTLDTDLNALFWD 61 Query: 77 SPTVCSDISS 86 D Sbjct: 62 PQLTDEDSED 71 >gi|256849045|ref|ZP_05554478.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] gi|256713821|gb|EEU28809.1| transcriptional regulator [Lactobacillus crispatus MV-1A-US] Length = 271 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 12/126 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++G+ ++ R LG++QE+ + + I+ K E+G N + A L I Sbjct: 1 MSKSIGEVLKEERRSLGLTQEQFIKGI-ISESFYSKVERGKNEIVAVDLLKILAANNISE 59 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F ++ E+ +QL + I D K + +++ +++ E Sbjct: 60 EEFLSKLNVKENNNLEEDLK----------VQLLNAY-SIHDKKKIRMLVQKIQNAAMDE 108 Query: 131 KKYRTI 136 + Sbjct: 109 NTKISA 114 >gi|228994068|ref|ZP_04153969.1| hypothetical protein bpmyx0001_47910 [Bacillus pseudomycoides DSM 12442] gi|228765716|gb|EEM14369.1| hypothetical protein bpmyx0001_47910 [Bacillus pseudomycoides DSM 12442] Length = 296 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 43/103 (41%), Gaps = 4/103 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ RM+ G++Q++L E + +V + E G LQ I+ L PI F+ Sbjct: 6 LGAEIKKIRMLRGLTQKQLSENI-CHQSEVSRIESGTVYPSMDILQGIAAKLRVPIIHFY 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 +V + + N + + +I ++++ Sbjct: 65 EVLLYSDLERKKKFKNQIQLLCKKKQYD---EIHKIVSEELKK 104 >gi|229191966|ref|ZP_04318936.1| hypothetical protein bcere0002_36230 [Bacillus cereus ATCC 10876] gi|228591517|gb|EEK49366.1| hypothetical protein bcere0002_36230 [Bacillus cereus ATCC 10876] Length = 144 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I R +SQ +L + LG + ++ YE+G L+ I++ E + Sbjct: 1 MLGKKISELRKKQKLSQYELADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60 Query: 74 FDVSPTVCSDISSEEN 89 D + T ++ N Sbjct: 61 LDRTQTKEMVSNNSSN 76 >gi|238855599|ref|ZP_04645900.1| helix-turn-helix domain protein [Lactobacillus jensenii 269-3] gi|260665341|ref|ZP_05866189.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] gi|282932713|ref|ZP_06338123.1| transcriptional regulator, XRE family [Lactobacillus jensenii 208-1] gi|238831743|gb|EEQ24079.1| helix-turn-helix domain protein [Lactobacillus jensenii 269-3] gi|260560845|gb|EEX26821.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US] gi|281303161|gb|EFA95353.1| transcriptional regulator, XRE family [Lactobacillus jensenii 208-1] Length = 278 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ +++ R L +SQ ++ + +T K E+G++ + A L I + I Sbjct: 1 MEIGEALKITRKKLNLSQSEMAGDV-LTKSYYSKIERGIHEINAQDLIDILNLHGIRIQD 59 Query: 73 FFDV 76 FF+ Sbjct: 60 FFEE 63 >gi|223983578|ref|ZP_03633760.1| hypothetical protein HOLDEFILI_01041 [Holdemania filiformis DSM 12042] gi|223964464|gb|EEF68794.1| hypothetical protein HOLDEFILI_01041 [Holdemania filiformis DSM 12042] Length = 353 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR RR LG++Q+++ E LG++ V K+E G + + L ++ +L++ ++ Sbjct: 1 MKINEVIRQRRKELGLTQDRVAELLGVSAPAVNKWENGNSYPDITLLPPLARLLKTDLNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + E N+M+ ++ ++ +VR+ Sbjct: 61 LLSFQDELTD---LEVANLMNEVAEQVKTGDLEAAFEMARDRVRE 102 >gi|254440509|ref|ZP_05054003.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative [Octadecabacter antarcticus 307] gi|198255955|gb|EDY80269.1| ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, putative [Octadecabacter antarcticus 307] Length = 822 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 35/78 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ +R + ++Q++L + I+ + + EK + + ++ ++ L + Sbjct: 571 GDRLKKKRSEMSLTQKELADAANISQPFLSRIEKKSSEASSDNVRALATALGVTAGWLQY 630 Query: 76 VSPTVCSDISSEENNVMD 93 S T + E+ N D Sbjct: 631 GSDTEVRSETVEDENAGD 648 >gi|196037891|ref|ZP_03105201.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196031161|gb|EDX69758.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 374 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+ K I +R ++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 INIHKIIADKRKEKRITQEELAAYIGITKASVSKWETGQSYPDITFLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSD--------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL-V 123 P + + ++ + + ++ + + + ++ I+ + Sbjct: 64 LISYKPQMEQEDIKYLYHRLAEAFSEKPFDEVMMECRKIIKKYYSCFPLLLQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + I EE M Sbjct: 124 HMLTEDTDRRIEILEEAM 141 >gi|306519572|ref|ZP_07405919.1| putative phage regulatory protein [Clostridium difficile QCD-32g58] Length = 176 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 43/115 (37%), Gaps = 13/115 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++Q +L + L + ++ E L ISE + + Sbjct: 75 RLKELRKKKELTQAELSKLLNCSLSKIAMLETSKREPVKEDLLRISEFFNVSVDYLLG-- 132 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + ++ ++I+T + ++ + + + ++ I + +V KK Sbjct: 133 ----------KTSIENYITTDEISKIIKSYESLPKEA-QEHINSYIEFLVDRYKK 176 Score = 37.5 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 4/121 (3%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R G+S +KL L I + + E G+ S ++ S+ + Sbjct: 1 MRTEKGISLDKLSTDLNINKSTLSRIENGLREPKESFIKDCSDYFGVSTDYLIGKINIDD 60 Query: 82 SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIEEECM 141 S+ ++ N I L+ R ++ ++ + + + I E R +E + Sbjct: 61 SNKLTKCLNSTFPI----RLKELRKKKELTQAELSKLLNCSLSKIAMLETSKREPVKEDL 116 Query: 142 V 142 + Sbjct: 117 L 117 >gi|187921133|ref|YP_001890165.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187719571|gb|ACD20794.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 107 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 9/100 (9%) Query: 16 GKRIRLRRMILGMSQEKLGEC----LGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G R++ R+ G+SQ++LG + ++ +YE GV++V + ++ VL+ P++ Sbjct: 10 GTRLKEARLEAGLSQKRLGIEAGLDPFVASTRINRYELGVHKVDHTFASRLATVLKVPVA 69 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 F + + I + +S L + ++ Sbjct: 70 FLYAEDSDLAQLIL-----IFGRLSKRKRADLLQNARSLE 104 >gi|15887791|ref|NP_353472.1| putative phage repressor [Agrobacterium tumefaciens str. C58] gi|15155365|gb|AAK86257.1| putative phage repressor [Agrobacterium tumefaciens str. C58] Length = 231 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 2/95 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+ IR R+ G+ L E G++ V +E+G N + LQ IS+ L Sbjct: 8 KKIGQAIRTARIRRGLVMRDLAEAGGVSTGAVGNWERGANAIAMEHLQAISQKLRIDPVA 67 Query: 73 FFDVSPT--VCSDISSEENNVMDFISTPDGLQLNR 105 + S + ++ V DF P G Sbjct: 68 LSNGSLRYLDEEEALADAEQVTDFGPAPTGPMDVE 102 >gi|13471336|ref|NP_102905.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14022081|dbj|BAB48691.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 180 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 44/125 (35%), Gaps = 8/125 (6%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R G++ ++ L + V + E+G++ S L+ +E+ PIS FF Sbjct: 6 IRALRRARGLTLAEIALKLDRSVGWVSQVERGLSTPSLSDLRAFAELFGVPISLFFSHDV 65 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI----VSSEKKYR 134 V S+ L + + E+VRSI + + Sbjct: 66 PVESERGVVVRAGRRRTLGTSESGLVEE---LLSPDLGGS-FEMVRSIFAPGAQMKTEQL 121 Query: 135 TIEEE 139 EE Sbjct: 122 RPTEE 126 >gi|307285484|ref|ZP_07565623.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306502708|gb|EFM71973.1| helix-turn-helix protein [Enterococcus faecalis TX0860] Length = 231 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 +RR LG++Q ++ E L +T Q + +E + L +S + E + T+ Sbjct: 1 MRRNELGLTQSEVAEKLYVTRQTISNWENNKSYPNIDCLIELSILYEMTLDRLLKEDNTM 60 Query: 81 CSDISSEENN 90 +S + Sbjct: 61 VEKLSKDIRE 70 >gi|268592289|ref|ZP_06126510.1| MrfJ protein [Providencia rettgeri DSM 1131] gi|291312068|gb|EFE52521.1| MrfJ protein [Providencia rettgeri DSM 1131] Length = 106 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 31/67 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + VG RIR R MS ++L LGI+ Q ++E G R+ L ISE+L Sbjct: 1 MKKNTSKIVGARIRTLRKDQNMSIQQLSTLLGISQQHQSRHELGEIRIHVDTLYSISEIL 60 Query: 67 ESPISFF 73 + I Sbjct: 61 DLDIQEL 67 >gi|239623531|ref|ZP_04666562.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239521562|gb|EEQ61428.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 115 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 31/104 (29%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G IR R G+SQ L E LGI + + E L + L Sbjct: 2 HDYVKTLGTVIRKAREEQGLSQASLAEKLGIDVRTIINIENFRGNPKFEVLYPLITALRI 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 P F D + + S + + I + Sbjct: 62 PADRIFYPGSDAIGDAKQQLFWELHNCSESEARAILPAVRYITE 105 >gi|218133297|ref|ZP_03462101.1| hypothetical protein BACPEC_01162 [Bacteroides pectinophilus ATCC 43243] gi|217992170|gb|EEC58174.1| hypothetical protein BACPEC_01162 [Bacteroides pectinophilus ATCC 43243] Length = 154 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 30/71 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G +Q +L +G+ + +Y KG + + I++VL + + + Sbjct: 38 SRLEEMRKEKGFTQRELASKVGVNEVSMSRYIKGERVPTVTTIVSIAQVLGASVDYLVGT 97 Query: 77 SPTVCSDISSE 87 S +++ Sbjct: 98 SNVKKRQNNAD 108 >gi|222530395|ref|YP_002574277.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457242|gb|ACM61504.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 104 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 48/111 (43%), Gaps = 11/111 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ RM MS+++L + L ++ + KYE+G + L I++ + + Sbjct: 4 GGILKDLRMQKKMSRQELAKMLELSESAIAKYEEGQRSPDLNTLIKIAKFFDVSTDYLLG 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 ++ + +P+ QL +++ + K+ +I+L+ + Sbjct: 64 LTNIPK----------PEMDLSPELKQLLAIALRMPEDKL-NLLIKLLEGL 103 >gi|167737064|ref|ZP_02409838.1| putative DNA-binding protein [Burkholderia pseudomallei 14] Length = 158 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 1/85 (1%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISE 64 K+ + V + +R+R R G+SQ++L + + E+G + S L +++ Sbjct: 3 KLHDAVASGLSERLRTIRKRAGLSQDELAARASLARPNLASVEQGRRANLRLSTLSRLAD 62 Query: 65 VLESPISFFFDVSPTVCSDISSEEN 89 VL + FF E+ Sbjct: 63 VLGVDVVDFFCDRSVDEQQPVGEDA 87 Score = 36.3 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R G+SQE L V + E LQ +++ L S I + Sbjct: 93 ANVKRLRSEAGLSQEALSVKAHRFRTYVGRLENEAASPMVVDLQDLADALGSQIPILLEP 152 Query: 77 SPTVCS 82 SP+ Sbjct: 153 SPSKRG 158 >gi|77458352|ref|YP_347857.1| transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382355|gb|ABA73868.1| putative DNA binding protein [Pseudomonas fluorescens Pf0-1] Length = 182 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++L R +SQ +L G+T + E+ S L+ + E + ++ FF Sbjct: 4 GSRLKLVRESYKLSQRELARRSGVTNATISLIEQNRVSPSVSSLKKLLEGIPMSLADFFT 63 Query: 76 VSPTVCS 82 Sbjct: 64 FDQPPRE 70 >gi|298209081|ref|YP_003717260.1| repressor protein [Croceibacter atlanticus HTCC2559] gi|83849008|gb|EAP86877.1| repressor protein [Croceibacter atlanticus HTCC2559] Length = 67 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R ++Q L E L ++ Q + E G I++ E+ + F Sbjct: 3 NNVKEVRKTKKVTQVDLAEYLSVSRQTIISIESGRYVPSTVLSLKIAKCFETTVESLF 60 >gi|73748675|ref|YP_307914.1| putative DNA-binding protein [Dehalococcoides sp. CBDB1] gi|147669434|ref|YP_001214252.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432701|ref|YP_003462574.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|73660391|emb|CAI82998.1| putative DNA-binding protein [Dehalococcoides sp. CBDB1] gi|146270382|gb|ABQ17374.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|288946421|gb|ADC74118.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 214 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 +++G++IR R G + E LG G++ Q ++K EKG + + +S + Sbjct: 2 MSIGEKIREFRKARGWTPEYLGTRSGLSGQYIRKLEKGERQSITLATANKLSNAFGIEPA 61 Query: 72 FFFDVSPTVCSDISSE 87 + + Sbjct: 62 KLISENDNSSPRQIED 77 >gi|312889751|ref|ZP_07749297.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311297677|gb|EFQ74800.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 133 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 61/141 (43%), Gaps = 13/141 (9%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + P+ + ++G++I R + G+ QE L LG++ Q V + E+ + L+ Sbjct: 1 METSAKPS--NNHIGRKIGRIRELRGIKQEVLAAELGVSQQTVSRMEQSE-TIEDDVLEK 57 Query: 62 ISEVLESP---ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++++L I F + + + + +N F N ++ V+ +K Sbjct: 58 VAKILGVSKEAIDNFSEDAVVNYFNNTFHGSNHGPF----YHCTFNPLDKLLEMVEENKK 113 Query: 119 IIELVRSIVSSEKKYRTIEEE 139 L +++SEK+ + ++ Sbjct: 114 ---LYERLLASEKEKLDLLKD 131 >gi|296128274|ref|YP_003635524.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296020089|gb|ADG73325.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 63 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R R+ G+SQ +L E LG++ Q V E G I+ + + F V Sbjct: 5 VRELRLAAGLSQRELAEALGVSRQTVNSIETGRYDPSLPLAIAIARQFQRAVEEIFHVD 63 >gi|229039980|ref|ZP_04189744.1| Transcriptional regulator Xre [Bacillus cereus AH676] gi|228727388|gb|EEL78581.1| Transcriptional regulator Xre [Bacillus cereus AH676] Length = 82 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RIR R + G +QE + LG++ + + E+G + +++ L I Sbjct: 22 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALNVSIEELM 80 >gi|225571479|ref|ZP_03780475.1| hypothetical protein CLOHYLEM_07577 [Clostridium hylemonae DSM 15053] gi|225159955|gb|EEG72574.1| hypothetical protein CLOHYLEM_07577 [Clostridium hylemonae DSM 15053] Length = 361 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 43/94 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R + G +QE++ E LG++ V K+E GV+ + L ++ L++ ++ Sbjct: 4 QLGKTIQQMRKVQGCTQEQMAETLGVSVAAVSKWENGVSCPDITLLPALARYLKTDLNAL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + ++ N M I G + F Sbjct: 64 LSFHEKISEQEAAAVVNEMSEIFFRSGFEAAYEF 97 >gi|218234393|ref|YP_002366467.1| DNA-binding protein [Bacillus cereus B4264] gi|218162350|gb|ACK62342.1| DNA-binding protein [Bacillus cereus B4264] Length = 404 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTAL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDEGEIVELIQ 74 >gi|159900468|ref|YP_001546715.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893507|gb|ABX06587.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 84 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R++ R + G++Q ++ + + V K E G RV L S++ SFF Sbjct: 15 LARRLKEARELAGLTQIQVAAIIHKSQSYVTKCETGEKRVDVIELLIFSKIYHRDPSFFT 74 Query: 75 DV 76 D Sbjct: 75 DD 76 >gi|111220770|ref|YP_711564.1| putative HTH-type transcriptional regulator [Frankia alni ACN14a] gi|111148302|emb|CAJ59975.1| Putative HTH-type transcriptional regulator [Frankia alni ACN14a] Length = 169 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 5/100 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ--VQKYEKGVNRVGASRLQHISEVLESPI 70 VG R+R R+ G+S + + + ++ V YE+G + +L ++ P+ Sbjct: 10 KAVGARLRAIRIQQGLSLQGVEQKSRGRWKTAAVGSYERGDRMISVHQLSELAGFYGVPV 69 Query: 71 SFFF---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 S D P + N + PD L R + Sbjct: 70 SALLPSEDQLPPRERRPRTVLNLEKLSEAPPDTSALVRRW 109 >gi|254974928|ref|ZP_05271400.1| putative phage regulatory protein [Clostridium difficile QCD-66c26] gi|255092317|ref|ZP_05321795.1| putative phage regulatory protein [Clostridium difficile CIP 107932] gi|255100398|ref|ZP_05329375.1| putative phage regulatory protein [Clostridium difficile QCD-63q42] gi|255314055|ref|ZP_05355638.1| putative phage regulatory protein [Clostridium difficile QCD-76w55] gi|255516735|ref|ZP_05384411.1| putative phage regulatory protein [Clostridium difficile QCD-97b34] gi|255649834|ref|ZP_05396736.1| putative phage regulatory protein [Clostridium difficile QCD-37x79] gi|306519934|ref|ZP_07406281.1| putative phage regulatory protein [Clostridium difficile QCD-32g58] Length = 132 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 4/110 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRI R ++Q KL + L + KYE G + L I++ + Sbjct: 4 LGKRIAYLRNSKKLTQRKLMDILKFEN--LGKYETGDRKPNCDILMSIADYFNVTTDWLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK--IIEL 122 V + S +E+ T D + + + Q+++ + I+EL Sbjct: 62 YGKEKVNVNSSVKEDKEDYLHVTNDEMMILNLYRQLNERDKIKIEGILEL 111 >gi|54302995|ref|YP_132988.1| transcriptional regulator [Photobacterium profundum SS9] gi|46916423|emb|CAG23188.1| hypothetical transcriptional regulator [Photobacterium profundum SS9] Length = 120 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 32/84 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +RIR+ R ++Q L + LG+ Q E G A L I+++L + F Sbjct: 9 KALAQRIRVARECRELTQTSLAKYLGVARQTYLDIETGKTEPKAGILLAIAQILRADYLF 68 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 + + N + + Sbjct: 69 LLTGTAKPDQYTTDAAANKLHSLM 92 >gi|120555195|ref|YP_959546.1| XRE family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120325044|gb|ABM19359.1| putative transcriptional regulator, XRE family [Marinobacter aquaeolei VT8] Length = 74 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+ +R R G SQE+L GI V K E+G + ++ +E+LE Sbjct: 10 GRNLRAIRKSKGFSQERLAHDAGIDRSYVGKIERGEVNITLEKIYVFAELLECSPKDLM 68 >gi|254229181|ref|ZP_04922600.1| transcriptional regulator, HTH_3 family protein [Vibrio sp. Ex25] gi|262395531|ref|YP_003287384.1| predicted transcriptional regulator [Vibrio sp. Ex25] gi|151938266|gb|EDN57105.1| transcriptional regulator, HTH_3 family protein [Vibrio sp. Ex25] gi|262339125|gb|ACY52919.1| predicted transcriptional regulator [Vibrio sp. Ex25] Length = 207 Score = 42.9 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 3/77 (3%) Query: 2 VGNKKIPNPVDIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 + K N +I +G+RI+ R LG++ E+ + G+ + K E Sbjct: 12 MTLAKEQNDQNIEPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQA 71 Query: 59 LQHISEVLESPISFFFD 75 +Q ++ L+ + F+ Sbjct: 72 MQKLALGLQIDMPQLFE 88 >gi|330468607|ref|YP_004406350.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811578|gb|AEB45750.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 77 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 1/66 (1%) Query: 17 KRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 IR R M+Q L E +G+T Q V E+G I+ V + F Sbjct: 9 NNIRALRFAHDEMTQADLAERVGVTRQTVIAIEQGRYSPSLEMAFRIARVFGVRLDDVFQ 68 Query: 76 VSPTVC 81 T Sbjct: 69 YPDTEE 74 >gi|325846459|ref|ZP_08169374.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481217|gb|EGC84258.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 69 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 21/64 (32%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ L R ++QE+L L ++ Q + E G I+ I F Sbjct: 3 NRLELIRKENKITQEELASILEVSRQTIGSLENGRYNPSIILAFKIARYFGLTIEDIFIY 62 Query: 77 SPTV 80 Sbjct: 63 EGED 66 >gi|310780515|ref|YP_003968847.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] gi|309749838|gb|ADO84499.1| transcriptional regulator, XRE family [Ilyobacter polytropus DSM 2926] Length = 178 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 1/91 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R G++ +KL + G++ + E+ N S LQ I L + Sbjct: 4 LGEKIKFCRKEKGLTLKKLSDMTGLSVGFISNIERNQNSPSVSNLQQICAALSINLMEIL 63 Query: 75 DVSPTVCSDISSEEN-NVMDFISTPDGLQLN 104 V+ + E+ V S ++L Sbjct: 64 QVNSDSSPVVKKEDRKEVFSSNSDHTKIELL 94 >gi|295107974|emb|CBL21927.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 71 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 30/66 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R+ +SQ +LGE L I+ + YE G + L +++ ++ I + Sbjct: 4 QRIQDLRVDSDLSQRQLGEILHISQRSYSHYETGSRGIPIEMLIRLADYYDTTIDYLVGR 63 Query: 77 SPTVCS 82 + Sbjct: 64 TDNKAP 69 >gi|291548981|emb|CBL25243.1| Predicted transcriptional regulator [Ruminococcus torques L2-14] gi|295110023|emb|CBL23976.1| Predicted transcriptional regulator [Ruminococcus obeum A2-162] Length = 211 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL + Sbjct: 10 FLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPNEL 69 Query: 74 FDVS 77 Sbjct: 70 LSGE 73 >gi|166031433|ref|ZP_02234262.1| hypothetical protein DORFOR_01130 [Dorea formicigenerans ATCC 27755] gi|166028838|gb|EDR47595.1| hypothetical protein DORFOR_01130 [Dorea formicigenerans ATCC 27755] Length = 115 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 46/112 (41%), Gaps = 3/112 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R LG++QE++G+ LG+T + E G + + I + Sbjct: 3 ERLKTLRKSLGLTQEEMGQRLGVTKTAICSLESGRRNLTEQMAKSICREFRVDYYWLTVG 62 Query: 77 SPTVCSDISS--EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + V ++ ++ + ++++ + RQ I + RS+ Sbjct: 63 DGEMFVAAPDCLIDEVVEEYNLDEVDRKMLKEYLEMTY-EHRQVIKDYFRSV 113 >gi|29347771|ref|NP_811274.1| hypothetical protein BT_2361 [Bacteroides thetaiotaomicron VPI-5482] gi|29339672|gb|AAO77468.1| hypothetical protein with Helix-turn-helix motif [Bacteroides thetaiotaomicron VPI-5482] Length = 129 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 10/127 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +VG ++ R+ GM QE L LG+ QQV + + L I+ VL Sbjct: 12 RHVGHNLQKIRVYFGMKQEALAADLGVN-QQVISKIEKQEEIEEGLLNQIASVLGISAEV 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D NN+ D + + F + KI+EL ++ SE++ Sbjct: 71 IKDFDVEKA---IYNINNIRDNTFEQGATSIAQQFNPL------DKIVELYERLLQSERE 121 Query: 133 YRTIEEE 139 + ++ Sbjct: 122 KIELLKK 128 >gi|15964249|ref|NP_384602.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15073425|emb|CAC41933.1| Putative HTH-type transcriptional regulator [Sinorhizobium meliloti 1021] Length = 89 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 33/71 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +RL R+ G+SQE+L I V + E+G+ V S ++ ++ LE P++ F Sbjct: 8 GWNLRLLRVERGLSQERLAFEARIDRAYVGRVERGMENVTISTIEALARALEVPVAALFS 67 Query: 76 VSPTVCSDISS 86 S Sbjct: 68 QPDRNASQPKP 78 >gi|54307172|ref|YP_133686.1| hypothetical protein Tn916_16 [Enterococcus faecalis] gi|431126|gb|AAC36976.1| ORF9 [Enterococcus faecalis] gi|532542|gb|AAB60024.1| ORF9 [Enterococcus faecalis] gi|1097946|prf||2114402R ORF 9 Length = 117 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 1/106 (0%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D G I+ R+ G+++E++G + I + + E L + Sbjct: 2 RKKEDKYDFRAFGLAIKEARLQRGLTREQVGALIEIDPRYLTNIENKGQHPSIQVLYDLV 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +L + FF + + + T L L Sbjct: 62 SLLHVSVDEFFLPANNLVKSTRRLQIEKYMDSFTDKELSLMESLAS 107 >gi|260463755|ref|ZP_05811952.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] gi|259030352|gb|EEW31631.1| transcriptional regulator, XRE family [Mesorhizobium opportunistum WSM2075] Length = 205 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 2/106 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G + +++ G+ + K E + +L I E L ++ Sbjct: 7 LGDCLRALRRTHGWTLQEVSTLTGVAVSTLSKVENDQMSLSYDKLLQICEGLGIHVTELL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + +V +T L N + + VR++++ Sbjct: 67 SGD--RKQPSARTRRSVTSQSNTLRQLTRNYDYRYLATDLVRKRMV 110 >gi|257465077|ref|ZP_05629448.1| hypothetical protein AM202_01110 [Actinobacillus minor 202] gi|257450737|gb|EEV24780.1| hypothetical protein AM202_01110 [Actinobacillus minor 202] Length = 135 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 56/130 (43%), Gaps = 1/130 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++IR R ++Q+++ + LG++ K E+G R+ +L+ I EV ++ I Sbjct: 1 MKINEKIRFLRESKSLTQDEMADRLGMSTNGYAKIERGETRLTIPKLEQIVEVFDTDILE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKIIELVRSIVSSEK 131 + NN I P L IQ+ + +Q+++ +++ +K Sbjct: 61 LMSLGERNVVYFQESGNNHSLNIINPTSQDLASEIIQLKQTISHQQEMLSAKNELIALQK 120 Query: 132 KYRTIEEECM 141 ++ + Sbjct: 121 SQLETLQKMV 130 >gi|218132726|ref|ZP_03461530.1| hypothetical protein BACPEC_00587 [Bacteroides pectinophilus ATCC 43243] gi|217992452|gb|EEC58455.1| hypothetical protein BACPEC_00587 [Bacteroides pectinophilus ATCC 43243] Length = 123 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 51/120 (42%), Gaps = 5/120 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RIR R ++Q +L L +T + + YE V+ + L +S++ + + + Sbjct: 9 LANRIRELRQEKKITQLQLSSQLEVTQETISAYENNVHMPSLAALMKMSKIFNASMDYIM 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 V + EE + D + + + ++ R +++ + +V +E++ + Sbjct: 69 -GQSNVRNIPKEEEPSAADIVQRNSLMTCYQKLGAMN----RARLLSYAQGLVDAERRIQ 123 >gi|194397827|ref|YP_002037955.1| putative transcriptional activator [Streptococcus pneumoniae G54] gi|194357494|gb|ACF55942.1| putative transcriptional activator [Streptococcus pneumoniae G54] Length = 287 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 2/97 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R +R +SQ+ L E + Q+ K E+G A L +S+ LE P+ +FF Sbjct: 4 LAEKFRXKRKEXXLSQQTLAEGI-CEQSQISKIERGHFIPSADLLFKLSQRLEVPLDYFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + + S++S+ + + + L Y +I+ Sbjct: 63 NEQIEIKSNLSNFKQLSARLLDDRNYDNL-EYIYRIE 98 >gi|196038079|ref|ZP_03105389.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196031349|gb|EDX69946.1| DNA-binding protein [Bacillus cereus NVH0597-99] Length = 67 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L M+QE L + +G+ + + EKG I+ L S I F Sbjct: 6 KIKEYRTKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 78 PT 79 Sbjct: 66 DE 67 >gi|111021488|ref|YP_704460.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110821018|gb|ABG96302.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 187 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 13/106 (12%), Positives = 37/106 (34%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + + +G IR R G++ + G++ + + E G + L +++VL + Sbjct: 6 HLLAVAIGTAIRSARHDAGLTLRDVAAKTGLSQPFLSQAENGHSVPSVMNLHRVAQVLGT 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + + +S L+ ++ + Sbjct: 66 TAHALLEQGARTPTSLVRSREGRRFALSDGAVLRFCSTGVRAMEPN 111 >gi|148266749|ref|YP_001245692.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392790|ref|YP_001315465.1| hypothetical protein SaurJH1_0316 [Staphylococcus aureus subsp. aureus JH1] gi|258419674|ref|ZP_05682641.1| transcriptional regulator [Staphylococcus aureus A9719] gi|258448642|ref|ZP_05696755.1| transcriptional regulator [Staphylococcus aureus A6224] gi|269203649|ref|YP_003282918.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282925315|ref|ZP_06332972.1| XRE family transcriptional regulator [Staphylococcus aureus A9765] gi|283771021|ref|ZP_06343912.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|284024165|ref|ZP_06378563.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|295407180|ref|ZP_06816981.1| XRE family transcriptional regulator [Staphylococcus aureus A8819] gi|297245933|ref|ZP_06929792.1| XRE family transcriptional regulator [Staphylococcus aureus A8796] gi|147739818|gb|ABQ48116.1| transcriptional regulator, XRE family [Staphylococcus aureus subsp. aureus JH9] gi|149945242|gb|ABR51178.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|257844259|gb|EEV68641.1| transcriptional regulator [Staphylococcus aureus A9719] gi|257858273|gb|EEV81161.1| transcriptional regulator [Staphylococcus aureus A6224] gi|262075939|gb|ACY11912.1| putative transcriptional regulator [Staphylococcus aureus subsp. aureus ED98] gi|282592591|gb|EFB97601.1| XRE family transcriptional regulator [Staphylococcus aureus A9765] gi|283459615|gb|EFC06706.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus H19] gi|294968033|gb|EFG44061.1| XRE family transcriptional regulator [Staphylococcus aureus A8819] gi|297177097|gb|EFH36351.1| XRE family transcriptional regulator [Staphylococcus aureus A8796] gi|315130281|gb|EFT86268.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus CGS03] Length = 107 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 12/101 (11%), Positives = 38/101 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++ +G+ + +YE G ++ + I+ L+ + Sbjct: 6 EIGKLIKQLRKENNVNLTDFATKIGVNKSTLSRYENGSRKIPMEDIAEIANALKVTPEYL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + +++ ++ ++ + ++ Y I + Sbjct: 66 LLKNRQTENEVQHRAAHLEGELTDDEWQRVLDYADYIRSKR 106 >gi|49479015|ref|YP_037453.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330571|gb|AAT61217.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 67 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L M+QE L + +G+ + + EKG I+ L S I F Sbjct: 6 KIKEYRTKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 78 PT 79 Sbjct: 66 DE 67 >gi|67078283|ref|YP_245903.1| transcriptional regulator [Bacillus cereus E33L] gi|66970589|gb|AAY60565.1| transcriptional regulator [Bacillus cereus E33L] Length = 66 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ L MSQE L +G+ + + E G I++VL++PI F Sbjct: 6 RMKEYRVRLNMSQEDLANKVGVRRETIGNLENGKYNPSFKLTYDIAKVLKAPIEVLFWFE 65 Query: 78 P 78 Sbjct: 66 E 66 >gi|315615352|gb|EFU95984.1| helix-turn-helix family protein [Escherichia coli 3431] Length = 192 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 28/76 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R +R G++ +L L + + + ++E G S L ++ +L Sbjct: 96 NLRTQREACGLTTAELARLLDLDEEIIIQWESGEYEPTISMLIPLANILGCDPMCLLTGE 155 Query: 78 PTVCSDISSEENNVMD 93 T SEE D Sbjct: 156 VTPPEQPKSEEQQHHD 171 >gi|269215841|ref|ZP_06159695.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] gi|269130791|gb|EEZ61867.1| toxin-antitoxin system, antitoxin component, Xre family [Slackia exigua ATCC 700122] Length = 72 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 21/57 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R MSQ L +G T Q + E G + I L ++ F Sbjct: 8 RMKAARAARDMSQGDLAAAVGATRQTIGLIEAGGYNPTLNLCIAICRALGCTLNDLF 64 >gi|254700709|ref|ZP_05162537.1| XRE family transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261751218|ref|ZP_05994927.1| transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261740971|gb|EEY28897.1| transcriptional regulator [Brucella suis bv. 5 str. 513] Length = 126 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 3/120 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 GKR+R R G++Q+++ + L ++ + E G + LQ I Sbjct: 5 GKRLRELREERGVTQKEMAQALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIWDE-- 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + +S + +P QL + + R I L I ++ K+ R Sbjct: 63 AEELQNLAAVSHPRVVIDTSGLSPQATQLANLLEKNIRLIDRDTIKHLTEEIAAARKRRR 122 >gi|302873084|ref|YP_003841717.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307688759|ref|ZP_07631205.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302575941|gb|ADL49953.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 118 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 6/108 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFFFDV 76 +I+ R +G++QE+ L I+ E+G + + +S+V P+ +F D Sbjct: 5 KIKELRKEMGLTQEEFASKLEISRSYYCDIERGRLKGTNVKIISKLSDVTGKPMEYFLDK 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 V + ++ L +I D R ++E+++ Sbjct: 65 DVEVKQYDILDSA-----LNMLIEKGLINSDGEITDETSRNIVMEILK 107 >gi|261344646|ref|ZP_05972290.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282567562|gb|EFB73097.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 91 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 7/78 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N +P+ N+GK ++ R G++ +L + + ++ QQ+ +YE GVN + +L Sbjct: 1 MQEN----DPLSNNIGKMLKSYRRRTGLTGTELAKRINVSQQQISRYENGVNNITFDKLM 56 Query: 61 HI---SEVLESPISFFFD 75 + E+ I FF+ Sbjct: 57 ILFNALEMNRYDIDIFFE 74 >gi|219850921|ref|YP_002465353.1| XRE family transcriptional regulator [Methanosphaerula palustris E1-9c] gi|219545180|gb|ACL15630.1| transcriptional regulator, XRE family [Methanosphaerula palustris E1-9c] Length = 69 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R G++QE L +G+ + + E+G ++ V + I F Sbjct: 4 RIKEYRARAGLTQEDLARSVGVRRETIVFLEQGKYNPSLKLAHDVAVVFHATIDDLFIFK 63 Query: 78 PTVCS 82 Sbjct: 64 EDEPK 68 >gi|167917954|ref|ZP_02505045.1| helix-turn-helix protein [Burkholderia pseudomallei BCC215] Length = 107 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++R R G++ EKL E G++ + + R A +L +++VL S+F Sbjct: 5 LGAKLRELRKEKGLTLEKLAELAGMSKSYVWELENRESQRPSAEKLTKLADVLGVAASYF 64 Query: 74 FDVSPTVCSDISSEENNVMDF 94 + + +E ++ Sbjct: 65 IEEDVRKPEERHRDEAFFRNY 85 >gi|158339379|ref|YP_001520556.1| transcriptional regulator with ATPase activity [Acaryochloris marina MBIC11017] gi|158309620|gb|ABW31237.1| transcriptional regulator with ATPase activity [Acaryochloris marina MBIC11017] Length = 216 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R + SQ L LG++ Q V +E G ++++ + I F Sbjct: 3 NRLKELRKLHHKSQAALARDLGVSRQAVNGFESGKFDPSLEMAFKLAKLFKVSIEDVF 60 >gi|223932164|ref|ZP_03624168.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223899145|gb|EEF65502.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 74 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R ++Q+ + + L IT K E+G + + A L +S + + Sbjct: 3 RRIRDIREDHDLTQQNVSDYLSITRSAYAKIERGEHTLSAEVLIQLSNLYNVSTDYLLGQ 62 Query: 77 SP 78 + Sbjct: 63 TD 64 >gi|331084883|ref|ZP_08333971.1| hypothetical protein HMPREF0987_00274 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410977|gb|EGG90399.1| hypothetical protein HMPREF0987_00274 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 121 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 33/81 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R GMSQE+LG L ++ Q + K+E + RL +S+ + Sbjct: 5 EKLISLRKSKGMSQEELGVELNVSRQTISKWESCQSYPDFQRLVLLSDFFGLTLDELVKD 64 Query: 77 SPTVCSDISSEENNVMDFIST 97 + + ++ I + Sbjct: 65 IDIQEVREKNLNSERLNSIYS 85 >gi|294478948|gb|ADE87513.1| Cro-repressor [Deep-sea thermophilic phage D6E] Length = 67 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 31/55 (56%) Query: 20 RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R+ G++Q+++ + L ++ Q ++ E G +R A L ++++ IS FF Sbjct: 8 KALRVNSGLTQKEVADYLNMSLTQYKRRENGKSRWYADELYRLAKLYNVDISVFF 62 >gi|309807483|ref|ZP_07701444.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 01V1-a] gi|312873356|ref|ZP_07733407.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|312875376|ref|ZP_07735380.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2053A-b] gi|315653816|ref|ZP_07906732.1| cro/CI family transcriptional regulator [Lactobacillus iners ATCC 55195] gi|325913352|ref|ZP_08175720.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|329920465|ref|ZP_08277197.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] gi|308169303|gb|EFO71360.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LactinV 01V1-a] gi|311089039|gb|EFQ47479.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2053A-b] gi|311091040|gb|EFQ49433.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|315488512|gb|EFU78158.1| cro/CI family transcriptional regulator [Lactobacillus iners ATCC 55195] gi|325477455|gb|EGC80599.1| DNA-binding helix-turn-helix protein [Lactobacillus iners UPII 60-B] gi|328936141|gb|EGG32594.1| DNA-binding helix-turn-helix protein [Lactobacillus iners SPIN 1401G] Length = 67 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 24/62 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R +Q +L E + + + + E G I+++ + + F+ + Sbjct: 6 KLKDYREKANYTQSELAEIVNVRRETIVHLENGRYNPSLKLAMDIAKIFKVKVEDLFEFT 65 Query: 78 PT 79 Sbjct: 66 DE 67 >gi|308067389|ref|YP_003868994.1| transcriptional regulator ydcN [Paenibacillus polymyxa E681] gi|305856668|gb|ADM68456.1| Putative HTH-type transcriptional regulator ydcN [Paenibacillus polymyxa E681] Length = 183 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 35/78 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ + K ++ R +S +KL + GI+ + + E+G + + + I+ L+ Sbjct: 4 INLILSKNLKYLRNERKLSLDKLADLTGISKTMLGQIERGESNPSITTVWKIANGLKISF 63 Query: 71 SFFFDVSPTVCSDISSEE 88 + + P+ + + Sbjct: 64 TALINEPPSDAVVVPKSK 81 >gi|296272112|ref|YP_003654743.1| XRE family transcriptional regulator [Arcobacter nitrofigilis DSM 7299] gi|296096287|gb|ADG92237.1| transcriptional regulator, XRE family [Arcobacter nitrofigilis DSM 7299] Length = 197 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 36/79 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK+I+ R M+ ++L + GI++ + E G + L+ +++VL I+ F Sbjct: 7 VGKKIKFLRKEKKMNAKELAKDAGISYGMLSLLESGSTQGSVETLRKVAKVLGVTIAHLF 66 Query: 75 DVSPTVCSDISSEENNVMD 93 S S + + + Sbjct: 67 TNSEDSDLATSPKNLDNEN 85 >gi|295692660|ref|YP_003601270.1| hth-type transcriptional regulator yqaf [Lactobacillus crispatus ST1] gi|295030766|emb|CBL50245.1| HTH-type transcriptional regulator yqaF [Lactobacillus crispatus ST1] Length = 86 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R+ GM+Q ++ + +T K E+GV+ + A+ L I ++ Sbjct: 1 MTIGEVLKSLRLHAGMTQTEMAAGI-VTESFYSKVERGVHAIDANVLIQILAKHHFDVTN 59 Query: 73 FFD 75 FF+ Sbjct: 60 FFE 62 >gi|258539032|ref|YP_003173531.1| phage-related Cro-like protein [Lactobacillus rhamnosus Lc 705] gi|257150708|emb|CAR89680.1| Phage-related Cro-like protein [Lactobacillus rhamnosus Lc 705] Length = 80 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 34/67 (50%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P V + + +R R+ G+SQ + +G+T ++++EK + + ++ IS++ Sbjct: 4 PEKVPVYLKHTLRDLRVRKGLSQSDAAKMMGVTEPTLRRWEKDSSDLTMQQIWKISKIYS 63 Query: 68 SPISFFF 74 P + F Sbjct: 64 IPQDYIF 70 >gi|197336241|ref|YP_002155779.1| transcriptional regulator, XRE family [Vibrio fischeri MJ11] gi|197317731|gb|ACH67178.1| transcriptional regulator, XRE family [Vibrio fischeri MJ11] Length = 100 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 4/72 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPI 70 + KR++ R ++Q++LG +G+ + YEKG + S LQ +++ L P+ Sbjct: 7 IPKRLKEARKHAKVTQKELGIRIGMEESSASGRMNHYEKGRHTPDISVLQRMAKELGVPL 66 Query: 71 SFFFDVSPTVCS 82 S+FF S ++ Sbjct: 67 SYFFCESDSLAE 78 >gi|170735407|ref|YP_001774521.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169821445|gb|ACA96026.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 81 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R RR+ G+SQE L GI + + E+G + L I++ L S Sbjct: 16 AIGATVRARRLEFGVSQEALALLTGIDRSHMGRIERGQRNLTILNLIRIADALNISPSKL 75 Query: 74 F 74 Sbjct: 76 L 76 >gi|30263992|ref|NP_846369.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Ames] gi|47778251|ref|YP_022674.1| prophage lambdaba02, repressor protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186831|ref|YP_030083.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Sterne] gi|165872207|ref|ZP_02216846.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0488] gi|167633712|ref|ZP_02392036.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0442] gi|167641029|ref|ZP_02399286.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0193] gi|170688718|ref|ZP_02879922.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0465] gi|170705922|ref|ZP_02896385.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0389] gi|177654321|ref|ZP_02936250.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0174] gi|254683686|ref|ZP_05147546.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. CNEVA-9066] gi|254721522|ref|ZP_05183311.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A1055] gi|254736031|ref|ZP_05193737.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Western North America USA6153] gi|254743922|ref|ZP_05201605.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Kruger B] gi|254754299|ref|ZP_05206334.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Vollum] gi|254758010|ref|ZP_05210037.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Australia 94] gi|30258636|gb|AAP27855.1| prophage LambdaBa02, repressor protein [Bacillus phage lambda Ba03] gi|47551956|gb|AAT35408.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180758|gb|AAT56134.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. Sterne] gi|164712154|gb|EDR17692.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0488] gi|167511079|gb|EDR86468.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0193] gi|167531118|gb|EDR93805.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0442] gi|170129462|gb|EDS98326.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0389] gi|170667234|gb|EDT17993.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0465] gi|172080811|gb|EDT65892.1| prophage LambdaBa02, repressor protein [Bacillus anthracis str. A0174] Length = 114 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 4/88 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G+ ++ R ++Q + G+ + ++ Q+ E N L I+ + Sbjct: 5 GENLKKFRNSRALTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFNISVDTLMG 64 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPD 99 F S D+ E V + Sbjct: 65 RKFTTSEKHLEDVLDEIQTVFAGLDESQ 92 >gi|16079517|ref|NP_390341.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. subtilis str. 168] gi|221310384|ref|ZP_03592231.1| SinR [Bacillus subtilis subsp. subtilis str. 168] gi|221314708|ref|ZP_03596513.1| SinR [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319631|ref|ZP_03600925.1| SinR [Bacillus subtilis subsp. subtilis str. JH642] gi|221323907|ref|ZP_03605201.1| SinR [Bacillus subtilis subsp. subtilis str. SMY] gi|296333382|ref|ZP_06875835.1| transcriptional regulator SinR [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675112|ref|YP_003866784.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. spizizenii str. W23] gi|321311945|ref|YP_004204232.1| transcriptional regulator SinR [Bacillus subtilis BSn5] gi|134504|sp|P06533|SINR_BACSU RecName: Full=HTH-type transcriptional regulator sinR gi|4389349|pdb|1B0N|A Chain A, Sinr ProteinSINI PROTEIN COMPLEX gi|143547|gb|AAA22757.1| Sin regulatory protein (ttg start codon) [Bacillus subtilis] gi|1303886|dbj|BAA12542.1| SinR [Bacillus subtilis] gi|2634895|emb|CAB14392.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. subtilis str. 168] gi|296149580|gb|EFG90476.1| transcriptional regulator SinR [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413356|gb|ADM38475.1| transcriptional regulator for post-exponential-phase response [Bacillus subtilis subsp. spizizenii str. W23] gi|320018219|gb|ADV93205.1| transcriptional regulator SinR [Bacillus subtilis BSn5] Length = 111 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 1/77 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R G S +L E G+ + E+ L+ +S VL+ + Sbjct: 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60 Query: 73 FFDVSPTVCSDISSEEN 89 D D + Sbjct: 61 LLDEKHETEYDGQLDSE 77 >gi|84686565|ref|ZP_01014458.1| transcriptional regulator, putative [Maritimibacter alkaliphilus HTCC2654] gi|84665478|gb|EAQ11955.1| transcriptional regulator, putative [Rhodobacterales bacterium HTCC2654] Length = 435 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 7/127 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR RR+ LG Q L +G++ + E R+G L ++ L + + + Sbjct: 8 GSRIRERRLALGTRQADLARAVGVSPAYLNLIEHNRRRIGGKLLVDLARELNTEPAQLSE 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL--QLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + + + ++ + F + R I E+ Sbjct: 68 GAGQALVNALRDAAARFENVTPELDRVEEFAGRFSGWS-----ALVATQARRIEDLERVV 122 Query: 134 RTIEEEC 140 T+ + Sbjct: 123 ETLSDRL 129 >gi|332967946|gb|EGK07034.1| transcriptional regulator [Kingella kingae ATCC 23330] Length = 68 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++R R I G SQ++L + + + Q + E ++ L++ ++ F Sbjct: 4 NQVRQYRQIKGWSQQELAQRVEVARQTINLIENNRYNPTLLLCIKLAHALDTDLNSLF 61 >gi|326943047|gb|AEA18943.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 63 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 2 NNVKQYRKSEGLSQLELAKKINVARQTINLIENNKYNPSLALCIELAKALKTDLNSLFWE 61 Query: 77 SP 78 Sbjct: 62 GD 63 >gi|322374701|ref|ZP_08049215.1| transcriptional regulator, MerR family [Streptococcus sp. C300] gi|321280201|gb|EFX57240.1| transcriptional regulator, MerR family [Streptococcus sp. C300] Length = 110 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 34/100 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++ RIR R M+Q +L E + + E + L+ I LE + Sbjct: 8 KHISLRIRYLRKQKKMTQWELSEKANLGINYIYNIENKNLNIKLETLEKIIIALEVTEAE 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 FF+ +++ + + +L I + Sbjct: 68 FFNFQNHDSDFETTKIFEQISELPVSKRKKLLNAINLILE 107 >gi|322388761|ref|ZP_08062358.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] gi|321140380|gb|EFX35888.1| cro/CI family transcriptional regulator [Streptococcus infantis ATCC 700779] Length = 169 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 1/83 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + F Sbjct: 9 GPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLFG 68 Query: 76 VSPT-VCSDISSEENNVMDFIST 97 S E N D +S Sbjct: 69 TSKEIELEKSVLESNEYSDKVSE 91 >gi|293607057|ref|ZP_06689400.1| DNA-binding/shikimate kinase domain protein [Achromobacter piechaudii ATCC 43553] gi|292814547|gb|EFF73685.1| DNA-binding/shikimate kinase domain protein [Achromobacter piechaudii ATCC 43553] Length = 302 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 4/100 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R I GM+++ L + G++ + + E GV L I+ ++ Sbjct: 19 VALGERVRRLRAIRGMTRKSLSQVTGVSERHLANLEHGVGNASILVLLQIARAFNCALAE 78 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + S + + + +S L R + Sbjct: 79 LVGD----VTTESPDWLLIRELLSGRTESDLQRAREALTQ 114 >gi|311744324|ref|ZP_07718128.1| PbsX family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311312497|gb|EFQ82410.1| PbsX family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 167 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 48/117 (41%), Gaps = 11/117 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R +R +S +L E ++ + + E+G+ R A LQ I++ L + Sbjct: 37 LGEYLREQRRQAQLSLRQLSEAADVSNPYLSQIERGLRRPSAEVLQQIAKALRISAESLY 96 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + +D S ++ + + + ++++ RS V ++ Sbjct: 97 VRAGILDADESGA-----------RMVEDAIALDPLLTERQKSALVDIYRSFVGTDD 142 >gi|291564063|emb|CBL42879.1| Predicted transcription factor, homolog of eukaryotic MBF1 [butyrate-producing bacterium SS3/4] Length = 120 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 32/83 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R G+SQE+LG L ++ Q + K+E + RL +S+ + Sbjct: 5 EKLINLRKSKGLSQEELGNELKVSRQTISKWESCQSYPDFQRLVLLSDYFGLTLDELVRD 64 Query: 77 SPTVCSDISSEENNVMDFISTPD 99 + N + I + Sbjct: 65 IDVQEVREKNLNNEKLSSIYSDM 87 >gi|284801435|ref|YP_003413300.1| hypothetical protein LM5578_1188 [Listeria monocytogenes 08-5578] gi|284994577|ref|YP_003416345.1| hypothetical protein LM5923_1141 [Listeria monocytogenes 08-5923] gi|284056997|gb|ADB67938.1| hypothetical protein LM5578_1188 [Listeria monocytogenes 08-5578] gi|284060044|gb|ADB70983.1| hypothetical protein LM5923_1141 [Listeria monocytogenes 08-5923] Length = 237 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 11/106 (10%), Positives = 36/106 (33%), Gaps = 3/106 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +++ R +Q L E +G++ + V ++E+ + + I V + + + Sbjct: 1 MAIHMKLKEERKRKQWTQNVLAEKIGVSREVVGRWERLESIPTLKNCKSICRVFDITMDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFIS---TPDGLQLNRYFIQIDDVKV 115 + D + + + + I ++ Sbjct: 61 LIKDEVDTKDNQLKYMKLGKDILDLANERYPIDFIKKYRIISKEEI 106 >gi|291298297|ref|YP_003509575.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567517|gb|ADD40482.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 262 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 4/100 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R ++Q++L G++ + + E G +R AS + + E L+ P+ Sbjct: 14 GELIRHWRGQRHLTQQQLSIRCGVSTRHLSFIETGRSRPTASMILRVCEELDVPLRH--- 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + + P +++ IQI D + Sbjct: 71 -RNDILLAAGHAPAFTESSLEQPSMRSISQALIQILDGHL 109 >gi|282600159|ref|ZP_05973201.2| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] gi|282566606|gb|EFB72141.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rustigianii DSM 4541] Length = 107 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 35/101 (34%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + GK +R R M+ ++L + + ++ QQ+ +YE G + +L + L+ Sbjct: 6 NSISFYTGKFLRKARKEKNMTGKQLAKLMHVSQQQISRYETGRTSLTLEQLSQLLFFLDK 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 V T N + L + Sbjct: 66 SWGELIQVIETEIEIEKKSINKDELINNYSLSKYLIDSLAK 106 >gi|212711611|ref|ZP_03319739.1| hypothetical protein PROVALCAL_02686 [Providencia alcalifaciens DSM 30120] gi|212685713|gb|EEB45241.1| hypothetical protein PROVALCAL_02686 [Providencia alcalifaciens DSM 30120] Length = 90 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+ +G +I+ R +S +++ +GI Q YEKG +R+ +L+ + E Sbjct: 6 PISEIIGHKIKFLRERKILSLQEVANAIGIDEIQQAHYEKGQSRIPIDKLKQYANYFEIN 65 Query: 70 ISFFF 74 + FF Sbjct: 66 MVTFF 70 >gi|197301827|ref|ZP_03166897.1| hypothetical protein RUMLAC_00554 [Ruminococcus lactaris ATCC 29176] gi|197299267|gb|EDY33797.1| hypothetical protein RUMLAC_00554 [Ruminococcus lactaris ATCC 29176] Length = 266 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 37/92 (40%), Gaps = 5/92 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 + +R++ R+ G++ E+L E ++ + YE + L +++ E + + Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEGDKFKDISHYALIELAKFYEVTVDYL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 S T + D + D ++L + Sbjct: 65 LGRSQTKNHPNADLA----DLCLSDDMIELLK 92 >gi|160942794|ref|ZP_02090035.1| hypothetical protein FAEPRAM212_00271 [Faecalibacterium prausnitzii M21/2] gi|158445959|gb|EDP22962.1| hypothetical protein FAEPRAM212_00271 [Faecalibacterium prausnitzii M21/2] Length = 134 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 31/76 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V ++ + ++ R M+QE + E +G++ Q V K+E G + S L ++ + P Sbjct: 59 VRKSLSEMLKENRTRCKMTQEFVAETIGVSRQAVSKWENGTSEPNTSNLMALARLYGIPA 118 Query: 71 SFFFDVSPTVCSDISS 86 + Sbjct: 119 EDLLKGVESALEAQEK 134 >gi|160933200|ref|ZP_02080589.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753] gi|156868274|gb|EDO61646.1| hypothetical protein CLOLEP_02046 [Clostridium leptum DSM 753] Length = 187 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 1/109 (0%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +IR R ++QE+L + +G+ + KYE G+ S+LQ I+ L P+ D+ Sbjct: 5 QIRRVRKAAHVTQEELAKRIGVNRALISKYETGIIEPSVSQLQKIASALGVPMMELLDLE 64 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV-RQKIIELVRS 125 E ++ R + +LV++ Sbjct: 65 EGAERIKRDENLIRKLSYEFDIPAEIIRRRAANKSSHTEIDALRKLVKA 113 >gi|118476146|ref|YP_893297.1| Cro/CI family transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|118415371|gb|ABK83790.1| transcriptional regulator, Cro/CI family [Bacillus thuringiensis str. Al Hakam] Length = 83 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 22 NQIYELRTKNNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|186470704|ref|YP_001862022.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184197013|gb|ACC74976.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 213 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 30/83 (36%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + ++ +GK ++ R G++ L E G++ V K E G + Sbjct: 13 MEDTGDGRSIESFLGKVVKEHRTNQGLTIADLAEQSGLSRSMVSKIENGQVSTSLDSIVS 72 Query: 62 ISEVLESPISFFFDVSPTVCSDI 84 ++ L IS F + Sbjct: 73 LARALGISISALFKNFEHREGNA 95 >gi|19908850|gb|AAM03020.1|AF472611_1 regulatory protein C.BcnI [Brevibacillus centrosporus] Length = 74 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + G+++R+ R G++QEKL E G+ + E+G + + ++ I+ L+ Sbjct: 3 DICRKFGRKVRIIREQKGLTQEKLAEEAGLHRTYISSLERGERSISLNNIEKIARALDVE 62 Query: 70 ISFFFDVSPTVC 81 I F Sbjct: 63 IYQLFIFREEKS 74 >gi|21244014|ref|NP_643596.1| hypothetical protein XAC3288 [Xanthomonas axonopodis pv. citri str. 306] gi|21109631|gb|AAM38132.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 112 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 57/136 (41%), Gaps = 29/136 (21%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQ-----QVQKYEKGVNRVGA 56 + K P V G R+R RM +G +Q +L E +G+ +V +YE G + Sbjct: 1 MPKPKTPATVY---GTRLRNARMAMGWTQAELAERIGMVDSVSGATRVSRYETGQHDPDP 57 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + + +++ L+ P+++F ++ ++ Q+ K R Sbjct: 58 ATAEALAKALDLPVAYF--------------------HATSDLLAEVILVVSQLPAAKQR 97 Query: 117 QKIIELVRSIVSSEKK 132 + + LV+ ++ ++ + Sbjct: 98 EA-LNLVKDLLPTQHR 112 >gi|10956667|ref|NP_066803.1| putative repressor protein [Rhodococcus equi] gi|31983897|ref|NP_858505.1| repressor protein [Rhodococcus equi] gi|197313525|ref|YP_002149570.1| putative helix turn helix protein [Rhodococcus equi] gi|197313592|ref|YP_002149636.1| putative helix turn helix protein [Rhodococcus equi] gi|10657914|gb|AAG21753.1| putative repressor protein [Rhodococcus equi] gi|10801105|dbj|BAB16659.1| Putative repressor protein (trbA) [Rhodococcus equi] gi|197092567|emb|CAQ30306.1| putative helix turn helix protein [Rhodococcus equi] gi|197092634|emb|CAQ30377.1| putative helix turn helix protein [Rhodococcus equi] gi|297718607|gb|ADI50222.1| putative helix-turn-helix protein [Rhodococcus equi] Length = 148 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G+S+ LG G+ + ++++E G + L ++EVL + Sbjct: 12 ARLKELRGEKGLSRSDLGRLSGVPYNTIRRWETGNSAPAPDLLARVAEVLGVDVDAL 68 >gi|89094257|ref|ZP_01167199.1| putative transcriptional regulator [Oceanospirillum sp. MED92] gi|89081512|gb|EAR60742.1| putative transcriptional regulator [Oceanospirillum sp. MED92] Length = 212 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKR++ R+ ++ E+ + G+ + K E S + + + L I Sbjct: 31 LQLGKRVKEIRLSQNLTLEEASKLTGLARSTLSKIENEQISPTFSAVNKLVKGLGIDIPQ 90 Query: 73 FFD 75 F Sbjct: 91 LFS 93 >gi|288919643|ref|ZP_06413971.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288348932|gb|EFC83181.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 168 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 5/100 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ--VQKYEKGVNRVGASRLQHISEVLESPI 70 VG R+R R+ G+S + + + ++ V YE+G + +L ++ P+ Sbjct: 7 KAVGSRLRAIRIQQGLSLQGVEQKSRGRWKTAAVGSYERGDRMISVHQLSELAGFYGVPV 66 Query: 71 SFFF---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 S D P + N + PD L R + Sbjct: 67 SALLPNEDQLPPRERRPRTVLNLEKLAAAPPDSSALVRRW 106 >gi|320007854|gb|ADW02704.1| transcriptional regulator, XRE family [Streptomyces flavogriseus ATCC 33331] Length = 509 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +GK IR R G +Q +L E L + V + E+G + + I E L Sbjct: 1 MEDDYLARIGKLIRDARQHRGWTQSQLAEALATSQSAVNRIERGNQNISLEMIARIGEAL 60 Query: 67 ESPI 70 +S I Sbjct: 61 DSEI 64 >gi|228943003|ref|ZP_04105508.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975941|ref|ZP_04136462.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977442|ref|ZP_04137836.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228782266|gb|EEM30450.1| Transcriptional regulator [Bacillus thuringiensis Bt407] gi|228783777|gb|EEM31835.1| Transcriptional regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816667|gb|EEM62787.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938467|gb|AEA14363.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 66 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R+ L ++Q+KL E +G+T Q + EKG I ++ ++ F Sbjct: 4 SKIKVARVQLDLTQQKLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLFWE 63 Query: 77 SPT 79 Sbjct: 64 EKE 66 >gi|229149987|ref|ZP_04278212.1| Transcriptional regulator, Xre [Bacillus cereus m1550] gi|228633425|gb|EEK90029.1| Transcriptional regulator, Xre [Bacillus cereus m1550] Length = 404 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTAL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 75 DVSPTVCSDISS 86 + ++ Sbjct: 63 EEDEGEIVELIQ 74 >gi|227501064|ref|ZP_03931113.1| possible transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|227216837|gb|EEI82235.1| possible transcriptional regulator [Anaerococcus tetradius ATCC 35098] Length = 95 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R G++Q LG +G++ Q + E+G ++ V + + F + Sbjct: 31 NKLSEIRKEKGINQTDLGNMVGVSRQTISLIERGDYNPSVMVALSLARVFDMRVEDIFGL 90 Query: 77 SPT 79 Sbjct: 91 EEE 93 >gi|268590841|ref|ZP_06125062.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291313624|gb|EFE54077.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 97 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 4/78 (5%) Query: 1 MVGNKKIPNP-VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+ ++ N V + +G ++ RR ++G++ +L L I+ QQV +YE+G N + L Sbjct: 1 MLNTQRNENTNVTVYIGSFLKHRRKVVGLTGSQLASRLKISQQQVSRYERGKNAITIQGL 60 Query: 60 QHI---SEVLESPISFFF 74 I E+ I F Sbjct: 61 LDILQALELRTHDIDDFM 78 >gi|194016262|ref|ZP_03054876.1| transcriptional regulator, Cro/CI family [Bacillus pumilus ATCC 7061] gi|194011735|gb|EDW21303.1| transcriptional regulator, Cro/CI family [Bacillus pumilus ATCC 7061] Length = 79 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R++ MSQ++L E +G++ Q + EKG I+ + ++ F Sbjct: 9 ISNKVYEYRVLARMSQQELAEKVGVSKQTIFVMEKGNYVPTLLLAFRIANFFKVDVNDIF 68 Query: 75 D 75 Sbjct: 69 T 69 >gi|241203160|ref|YP_002974256.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857050|gb|ACS54717.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 469 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 2/117 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L ++Q + E L I+ + E+ + L ++ V + Sbjct: 9 GPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLASVYRVDLEELRG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + + P +L + +I+L R+ + Sbjct: 69 QTGGSLGQLKEVFADPLLSGELPGDQELVEVAEAAPNAAS--GMIKLYRAYREQAAR 123 >gi|166032344|ref|ZP_02235173.1| hypothetical protein DORFOR_02047 [Dorea formicigenerans ATCC 27755] gi|166028067|gb|EDR46824.1| hypothetical protein DORFOR_02047 [Dorea formicigenerans ATCC 27755] Length = 116 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N+K N + N+G R++ R + ++Q ++ + L +T + E + L Sbjct: 5 MNKNQKDGN-FEENLGSRVKKLRQEMNLTQAEVADALHVTPGYISNVENNRTAMSLRILI 63 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVM 92 + ++++ + + + + + + Sbjct: 64 YYAKLMNTTLDSLVGSLEPAYKENALDNEVMH 95 >gi|116250534|ref|YP_766372.1| HTH transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255182|emb|CAK06256.1| putative HTH transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 469 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 38/117 (32%), Gaps = 2/117 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L ++Q + E L I+ + E+ + L ++ V + Sbjct: 9 GPKVRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLASVYRVDLEELRG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + + + + P +L + +I+L R+ + Sbjct: 69 QTGGSLGQLKEVFADPLLSGELPGDQELVEVAEAAPNAAS--GMIKLYRAYREQAAR 123 >gi|145592882|ref|YP_001157179.1| XRE family transcriptional regulator [Salinispora tropica CNB-440] gi|145302219|gb|ABP52801.1| transcriptional regulator, XRE family [Salinispora tropica CNB-440] Length = 191 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 11/115 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K +PN +G IR R +S +L E G++ + + E+G+ + A LQ Sbjct: 1 MASGKDLPN-----IGGFIRDLRRSAKISLRQLSEQAGVSNPYLSQIERGLRKPSAEVLQ 55 Query: 61 HISEVLESPI------SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++ L + D + ++ + Q+ F + Sbjct: 56 QLASALRVSTPAMYLRAGLLDDREGQGVLAAIAADSDLTMAQKQSLTQIYETFRR 110 >gi|158319817|ref|YP_001512324.1| XRE family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140016|gb|ABW18328.1| transcriptional regulator, XRE family [Alkaliphilus oremlandii OhILAs] Length = 71 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ + R G+SQE+ + + ++ Q + E G IS PI F Sbjct: 3 NKVEILRKEKGLSQEEFAKIIRVSRQTISSIETGKYNPSLELAFIISNYFGKPIEEIF 60 >gi|119944087|ref|YP_941767.1| DNA-binding transcriptional regulator [Psychromonas ingrahamii 37] gi|119862691|gb|ABM02168.1| transcriptional regulator, XRE family [Psychromonas ingrahamii 37] Length = 518 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 7/92 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITF-------QQVQKYEKGVNRV 54 + N K +G +IR R ++ + L + E+G Sbjct: 1 MKNSKTLIRQSHFLGTKIRNLRKRNNLTLDDLSARCVKLEPECAPSVSYLSMIERGKRVP 60 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSDISS 86 G L+ I++V + + +F D + Sbjct: 61 GEDMLEVIAQVFQKNMHWFLDDASEQAEITPE 92 >gi|78046918|ref|YP_363093.1| putative DNA-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035348|emb|CAJ22993.1| putative DNA-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 461 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 10/134 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R G++Q +L L ++ + + E+ + + Q + L Sbjct: 11 QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRPLTLAIQQRLKSALGD----- 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVRSIVSSE 130 + + D + +D G L ++ +V Q +++L R+ Sbjct: 66 --LDGLLDLDDPAALVEPLDASLRSLGHTLLPAELRALTGNLPQVAQALLDLHRAHQHLL 123 Query: 131 KKYRTIEEECMVEQ 144 ++ +E + VE Sbjct: 124 ERNAALELQIGVEH 137 >gi|152976336|ref|YP_001375853.1| XRE family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025088|gb|ABS22858.1| transcriptional regulator, XRE family [Bacillus cytotoxicus NVH 391-98] Length = 112 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 8/114 (7%) Query: 12 DINVGKRIRLRR-MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D +G RI+ R +L MSQ + E L + YE G ++ +S + Sbjct: 3 DNIIGIRIKEIRVELLKMSQREFAEALNAKKTMISLYENGKRNPSRETVEKMSRLSGVSA 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + +S + D + + + R++II +++ Sbjct: 63 DYIMGLSEHKSLNSKDSRALKDDLKELMQQIDEL-------NPRKREEIINMIK 109 >gi|223933217|ref|ZP_03625208.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|330832261|ref|YP_004401086.1| XRE family transcriptional regulator [Streptococcus suis ST3] gi|223898147|gb|EEF64517.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|329306484|gb|AEB80900.1| transcriptional regulator, XRE family [Streptococcus suis ST3] Length = 126 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 42/114 (36%), Gaps = 9/114 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+RIR R + G Q + + + + K+E GVN +L ++E+L++ + Sbjct: 10 EVGQRIRELREMRGFEQLDIANQLGYKSQSTISKWESGVNLPTGKKLILLAEMLDTSTDY 69 Query: 73 FFDV--------SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 T D M + P + I + +++ + Sbjct: 70 ILHGKISDTSTKDTTPTIDFKEMAAESMSYDGMPLNDEDIDLIASILETRMKNR 123 >gi|325662674|ref|ZP_08151271.1| hypothetical protein HMPREF0490_02011 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086418|ref|ZP_08335498.1| hypothetical protein HMPREF0987_01801 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471013|gb|EGC74240.1| hypothetical protein HMPREF0490_02011 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406184|gb|EGG85707.1| hypothetical protein HMPREF0987_01801 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 65 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ RM G+SQ +L E +T Q + E G I + L + F Sbjct: 5 KLKIARMEQGLSQVQLAEMTDVTRQTIGMIEAGDFNPSLKLCIRICKALGKTLDDLF 61 >gi|296110774|ref|YP_003621155.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] gi|295832305|gb|ADG40186.1| putative transcriptional regulator [Leuconostoc kimchii IMSNU 11154] Length = 171 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 27/56 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ +R L ++Q +L E L ++ + + +E G + +I+++L + Sbjct: 7 IKTKRQELNITQSELAEKLFVSNKTISNWETGKTMPDLDNVLYIAKILRISLDKLL 62 >gi|291560642|emb|CBL39442.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 138 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 9/83 (10%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N +G RI G++Q +L +G+T + +Y G + Sbjct: 1 MNENN---------LGGRIADLLKKSGLTQRELANKVGVTEASMSRYISGGRIPKGPTIA 51 Query: 61 HISEVLESPISFFFDVSPTVCSD 83 +I+ L + + + + Sbjct: 52 NIANALHTTSDYLLGTEEDITKE 74 >gi|291544390|emb|CBL17499.1| Predicted transcriptional regulators [Ruminococcus sp. 18P13] Length = 470 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 35/80 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R+ G+SQE+L + +G + + EKG + + I+E L+ +S + Sbjct: 15 QKLTQARLEKGLSQEQLAKRIGTQRSNICRIEKGTQNLSLDLMIKIAEALDKDVSVMLEE 74 Query: 77 SPTVCSDISSEENNVMDFIS 96 + + S ++ Sbjct: 75 RSSTMEKVYSLRLYDETLLT 94 >gi|289641007|ref|ZP_06473176.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289509127|gb|EFD30057.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 164 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ--VQKYEKGVNRVGASRLQHISEVLESPI 70 VG R+R R+ G+S + + + ++ V YE+G + +L ++ P+ Sbjct: 7 KAVGARLRAIRIQQGLSLQGVEQKSRGRWKTAAVGSYERGDRMISVHQLSELAAFYGVPV 66 Query: 71 SFFFDVSPTVCS 82 S + Sbjct: 67 SALLPEEEALPP 78 >gi|260101837|ref|ZP_05752074.1| DNA-binding protein [Lactobacillus helveticus DSM 20075] gi|260084352|gb|EEW68472.1| DNA-binding protein [Lactobacillus helveticus DSM 20075] gi|328463661|gb|EGF35254.1| transcriptional regulator [Lactobacillus helveticus MTCC 5463] Length = 66 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 23/62 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R +SQ +L + +G+ Q + E ++ VL + ++ F Sbjct: 4 VREYRKQKKISQMELAKRIGVARQTINLIENDKYNPSLELCLSLAHVLGTDLNSLFWDGD 63 Query: 79 TV 80 Sbjct: 64 EQ 65 >gi|258448877|ref|ZP_05696987.1| cI-like repressor [Staphylococcus aureus A6224] gi|257857914|gb|EEV80805.1| cI-like repressor [Staphylococcus aureus A6224] gi|329730605|gb|EGG66990.1| peptidase S24-like protein [Staphylococcus aureus subsp. aureus 21193] Length = 243 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 41/119 (34%), Gaps = 8/119 (6%) Query: 15 VGKRIRLRRMILGMSQEKLG--------ECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +G+ ++ R M+ E+L + + +T ++ K+E S + ++E Sbjct: 3 IGEGLKKLRKNKNMTMEQLATDLNNKYPDLMKLTKGKISKWENEKEEPRLSTAKILAEYF 62 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 I+ + S T D + + LN Q+++ I S Sbjct: 63 NVKINDLYSESNTTYKDDNDITSIYNKLTPPRQENVLNYANEQLEEQNKVTSIDGYKES 121 >gi|257439726|ref|ZP_05615481.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197866|gb|EEU96150.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 266 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 + +R++ R+ G++ E+L E ++ + YE + L +++ E + + Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEGDKFKDISHYALIELAKFYEVTVDYL 64 Query: 74 FDVSPTVCSDISSEEN 89 S T + + Sbjct: 65 LGRSETKNHSNADLAD 80 >gi|256790076|ref|ZP_05528507.1| transcriptional regulator [Streptomyces lividans TK24] Length = 197 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 34/82 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V KRIR R+ G S E+L ++ + + E G R+ +L ++ L++ Sbjct: 7 DLDSLVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARALDTT 66 Query: 70 ISFFFDVSPTVCSDISSEENNV 91 + + + ++ Sbjct: 67 LDQLVETADEDVITSPMIDSAH 88 >gi|253996838|ref|YP_003048902.1| XRE family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983517|gb|ACT48375.1| transcriptional regulator, XRE family [Methylotenera mobilis JLW8] Length = 154 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 1/78 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R L +SQ ++ E G +YE L I+ + + + Sbjct: 16 GERLKEERKRLNLSQVEMAERGGCQRLAQLQYENESRAPTIRYLNSIA-LAGVDLGYLVL 74 Query: 76 VSPTVCSDISSEENNVMD 93 +S E+ V++ Sbjct: 75 GVRFNQVSLSDEQEQVIE 92 >gi|238062141|ref|ZP_04606850.1| transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883952|gb|EEP72780.1| transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 189 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 21/57 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG R+R R GMS L G+ + E G L ++ L P+ Sbjct: 21 AVGARVRALREERGMSLSTLARLAGVGKATLSGLENGTRNPTLETLYAVTAQLGVPL 77 >gi|229181840|ref|ZP_04309148.1| Transcriptional regulator [Bacillus cereus 172560W] gi|228601638|gb|EEK59151.1| Transcriptional regulator [Bacillus cereus 172560W] Length = 116 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 7/118 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R+ M+QE+ G+ L +T V K+E G ++ I++ P+++ + + Sbjct: 6 RIKQIRLEHKMNQEQFGKELDLTKGTVSKFENGKAFPSRETIEKIAKRFAVPVNYLYGEN 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 D + E + + +++ + +++ KK Sbjct: 66 NVANHDDNKYEKFKEIMAW-------LEPLPKDKEDMALDQMLAIAQALNKHHKKTEK 116 >gi|227824109|ref|YP_002828082.1| putative transcriptional regulator with cupin 2 conserved barrel [Sinorhizobium fredii NGR234] gi|227343111|gb|ACP27329.1| putative transcriptional regulator with cupin 2 conserved barrel [Sinorhizobium fredii NGR234] Length = 197 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 36/88 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+R R + ++ ++L G++ + + E+G A L + L + +S F Sbjct: 17 IGERVREMRTVQALTLDELAIRSGVSRAMISRIERGEASPTAQLLAKLCSALGTTLSALF 76 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ 102 + S ++ + L+ Sbjct: 77 ASAAENASPVARRAEQRLWRDPESGYLR 104 >gi|197303466|ref|ZP_03168505.1| hypothetical protein RUMLAC_02188 [Ruminococcus lactaris ATCC 29176] gi|197297464|gb|EDY32025.1| hypothetical protein RUMLAC_02188 [Ruminococcus lactaris ATCC 29176] Length = 68 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R G+SQEK + + E G V ++ I++ E + F Sbjct: 8 NRIKELRQQQGLSQEKFALKIDMDRTYYASVEAGKRNVSIKNIKKIADGFEISLEELF 65 >gi|229917672|ref|YP_002886318.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229469101|gb|ACQ70873.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 396 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 1/96 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R M+Q +L E + +T + E G L+ ++ L+ + Sbjct: 1 MIGERIKTLRKQKKMTQTQLAEGI-VTKSMLSMIENGKAEASMRSLRELASRLDVSMQQL 59 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 E+ + Q R + Sbjct: 60 LTDPKEAELQTMVEQLEYEEMTLVSRPDQEIRQMLS 95 >gi|157325325|ref|YP_001468745.1| gp41 [Listeria phage B054] gi|300765822|ref|ZP_07075796.1| hypothetical protein LMHG_12475 [Listeria monocytogenes FSL N1-017] gi|66733330|gb|AAY53146.1| gp41 [Listeria phage B054] gi|300513399|gb|EFK40472.1| hypothetical protein LMHG_12475 [Listeria monocytogenes FSL N1-017] Length = 142 Score = 42.9 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 22/57 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RI+ R +QE++ + LG+ YE+ A I+ + + + Sbjct: 4 SRIKELRKESKKTQEEMAKILGVAKTTYASYEQAKRMPDAEIQNKIANYFDVSLDYL 60 >gi|312873901|ref|ZP_07733939.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] gi|311090577|gb|EFQ48983.1| DNA-binding helix-turn-helix protein [Lactobacillus iners LEAF 2052A-d] Length = 199 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + V +R++ R I +Q++ E LGI + YE G N L I++ + Sbjct: 3 NRTVSERLKYLRSINKKTQKEFAEFLGIPQPSMSAYENGKNNPTIDVLIDIADKCSVSLD 62 Query: 72 FFFDVSP 78 + S Sbjct: 63 WLAGRSD 69 >gi|307943363|ref|ZP_07658707.1| XRE family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307772993|gb|EFO32210.1| XRE family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 123 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 4/120 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPIS-- 71 +G +IR R G+S +++ + L ++ + E G R +Q I Sbjct: 4 LGAKIRELRKKRGVSLKEMAKELSVSSAYLSALEHGKRGRPTWFMVQRIIAYFNVIWDEA 63 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + + + MD +T QL + + + + +L R + + + Sbjct: 64 EEIQRLAELSDPKITLDTSGMDPKATELTNQLALKIGGLSEESLAHLLHQL-RVVAAKDS 122 >gi|300786099|ref|YP_003766390.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299795613|gb|ADJ45988.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 197 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 24/60 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG R++ R ++ L GI+ + + E G + L I++ + P+ Sbjct: 11 EVGPRLKRVRTQRRVTLADLSAATGISKSTLSRLESGQRKPSLELLLPIAQAHQVPLDEL 70 >gi|295108456|emb|CBL22409.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 87 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 6/82 (7%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQ-----QVQKYEKGVNRVGASRLQ 60 K N + +G+R++ R ++Q+ L L + + + E+G V + Sbjct: 7 KKTNSKNR-IGQRVKELRKAHNLTQKTLAAKLQLAGYDFNDLAILRIEQGTRFVPDYEVV 65 Query: 61 HISEVLESPISFFFDVSPTVCS 82 ++EV + ++ Sbjct: 66 ALAEVFNVSCEYLLGLTDAPAK 87 >gi|332855796|ref|ZP_08436047.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332870031|ref|ZP_08439007.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|332727271|gb|EGJ58715.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332732531|gb|EGJ63782.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] Length = 213 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 33/59 (55%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R +S+ KLG+ +G++ V +EK VN L+ + +VL++ I + Sbjct: 4 IGLRIQKLRKEKKLSKVKLGDLVGVSDVTVGFWEKDVNEPKYENLEALCQVLDTTIDYL 62 >gi|323342820|ref|ZP_08083052.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463932|gb|EFY09126.1| XRE family transcriptional regulator [Erysipelothrix rhusiopathiae ATCC 19414] Length = 68 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 24/62 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR +R LG +Q+ E +G++ Q V EKG S VL + F Sbjct: 6 IRDKREALGYTQQFFAEQVGVSRQTVIALEKGSYNPSLELAFKCSIVLNCTLDGLFQYEE 65 Query: 79 TV 80 Sbjct: 66 KP 67 >gi|254707402|ref|ZP_05169230.1| XRE family transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|254709055|ref|ZP_05170866.1| XRE family transcriptional regulator [Brucella pinnipedialis B2/94] gi|254713518|ref|ZP_05175329.1| XRE family transcriptional regulator [Brucella ceti M644/93/1] gi|254716126|ref|ZP_05177937.1| XRE family transcriptional regulator [Brucella ceti M13/05/1] gi|256030580|ref|ZP_05444194.1| XRE family transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|256158576|ref|ZP_05456466.1| XRE family transcriptional regulator [Brucella ceti M490/95/1] gi|256253987|ref|ZP_05459523.1| XRE family transcriptional regulator [Brucella ceti B1/94] gi|261217896|ref|ZP_05932177.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261221127|ref|ZP_05935408.1| transcriptional regulator [Brucella ceti B1/94] gi|261314889|ref|ZP_05954086.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261316553|ref|ZP_05955750.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261321254|ref|ZP_05960451.1| transcriptional regulator [Brucella ceti M644/93/1] gi|265987627|ref|ZP_06100184.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265997087|ref|ZP_06109644.1| transcriptional regulator [Brucella ceti M490/95/1] gi|260919711|gb|EEX86364.1| transcriptional regulator [Brucella ceti B1/94] gi|260922985|gb|EEX89553.1| transcriptional regulator [Brucella ceti M13/05/1] gi|261293944|gb|EEX97440.1| transcriptional regulator [Brucella ceti M644/93/1] gi|261295776|gb|EEX99272.1| transcriptional regulator [Brucella pinnipedialis B2/94] gi|261303915|gb|EEY07412.1| transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|262551555|gb|EEZ07545.1| transcriptional regulator [Brucella ceti M490/95/1] gi|264659824|gb|EEZ30085.1| transcriptional regulator [Brucella pinnipedialis M292/94/1] Length = 126 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 3/120 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 GKR+R R G++Q+++ + L ++ + E G + LQ I Sbjct: 5 GKRLRELREERGVTQKEMAQALRVSSAYLSALEHGRRGQPTWDLLQRIITYFNIIWDE-- 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + +S + +P QL + + R I L I ++ K+ R Sbjct: 63 AEELQNLAAVSHPRVVIDTSGLSPQATQLANLLAKNIRLIDRDTIKHLTEEIAAARKRRR 122 >gi|210612193|ref|ZP_03289190.1| hypothetical protein CLONEX_01390 [Clostridium nexile DSM 1787] gi|210151698|gb|EEA82705.1| hypothetical protein CLONEX_01390 [Clostridium nexile DSM 1787] Length = 78 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGIT-----FQQVQKYEKGVNRVGASRLQHISEVL 66 D+++GK I+ R ++Q+++ L + K E + S L ++++ Sbjct: 7 DMDIGKNIQTIRYANKLTQDQVVAKLNLMGISMSKSTYAKLETNRMNIKVSELVALAKIF 66 Query: 67 ESPISFFFDV 76 + I+ FF Sbjct: 67 HTDINAFFSG 76 >gi|166032159|ref|ZP_02234988.1| hypothetical protein DORFOR_01862 [Dorea formicigenerans ATCC 27755] gi|226325751|ref|ZP_03801269.1| hypothetical protein COPCOM_03564 [Coprococcus comes ATCC 27758] gi|166027882|gb|EDR46639.1| hypothetical protein DORFOR_01862 [Dorea formicigenerans ATCC 27755] gi|225205875|gb|EEG88229.1| hypothetical protein COPCOM_03564 [Coprococcus comes ATCC 27758] Length = 105 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 1/98 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI R+ +S+ ++ LG +Q G + I + LE F Sbjct: 5 FIGERISELRLKKNVSEYQMSLDLGKNKSYIQSLTSGRSLPTMQSFLDICDYLEVTPQQF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 FD S + + ++M + D L L ++ Sbjct: 65 FD-SELHNLPLIDKATDLMKQLDDEDMLALISMLNRLA 101 >gi|297619135|ref|YP_003707240.1| XRE family transcriptional regulator [Methanococcus voltae A3] gi|297378112|gb|ADI36267.1| transcriptional regulator, XRE family [Methanococcus voltae A3] Length = 194 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + VG +I+ R + MS E+L + G + ++K E G L I+ L + Sbjct: 5 NNQVGIKIKKVRELNNMSIEELAKVSGNDVELLKKIENGDLIPSLKPLIAIARALGVRLG 64 Query: 72 FFFDVSPTVCSDISS 86 F D P + +S Sbjct: 65 TFLDDLPELGPVVSR 79 >gi|108759801|ref|YP_632649.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108463681|gb|ABF88866.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 160 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 42/124 (33%), Gaps = 7/124 (5%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +++ + +G R R LG++Q ++ E LG+ + E+G L + Sbjct: 44 RRMNEELATRIGSAAREARTQLGLTQAEVAEKLGLAHMVYSRLERGKMLPSVQTLLRMCA 103 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 VL ++ + L+ + D + ++++ + Sbjct: 104 VLRIGSDELLGLADAEEGKGARGPGG-------APRLRQLTGLARKMDEEQLDALVKVAQ 156 Query: 125 SIVS 128 ++ Sbjct: 157 VLLR 160 >gi|27497171|gb|AAN64201.1| Orf9 [Photorhabdus luminescens] Length = 130 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 31/74 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK + R ++Q KL + L I + V ++E+G + + ++++LE I Sbjct: 17 GKNLSSIRKSRQLTQLKLADLLDIQPRMVGRWEQGKAKPQFDYIIKLAQILEVSIDHLLL 76 Query: 76 VSPTVCSDISSEEN 89 + +N Sbjct: 77 GDKGSAAPEFDIKN 90 >gi|223932872|ref|ZP_03624868.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223898453|gb|EEF64818.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 68 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 36/61 (59%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+RI++ R+ LG + E+ G+ + V +EKG N + L+ I+++ ++P+ F Sbjct: 1 MELGERIKVIRVSLGETMEQFGQRFNTSKGTVNNWEKGRNAPNKANLKKIADLSDNPMEF 60 Query: 73 F 73 Sbjct: 61 I 61 >gi|255101457|ref|ZP_05330434.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255307330|ref|ZP_05351501.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] Length = 66 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R + ++QE+L E +G+ + + + E G IS+++++PI F Sbjct: 7 NLKKYRQLKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAIDISKIVDTPIDELF 63 >gi|196251088|ref|ZP_03149768.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|196209382|gb|EDY04161.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 46 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 25/46 (54%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 + +G++I+ R G+SQE+L E LG++ V K+E G Sbjct: 1 MTLGEKIKKARTEAGLSQEQLSEKLGVSRSAVAKWESGKGLPDIDN 46 >gi|167563774|ref|ZP_02356690.1| transcriptional regulator, XRE family protein [Burkholderia oklahomensis EO147] Length = 81 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 25/67 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R G SQEKL G+ V E+G + + ++E LE S Sbjct: 10 GKRLVELRKAKGWSQEKLALESGLARSYVGGIERGQRNIALYNICVLAETLEVVPSDMLA 69 Query: 76 VSPTVCS 82 Sbjct: 70 FEIEPVK 76 >gi|156936736|ref|YP_001436087.1| DNA-binding protein RDGA [Vibrio harveyi ATCC BAA-1116] gi|156529983|gb|ABU75067.1| hypothetical protein VIBHAR_p08220 [Vibrio harveyi ATCC BAA-1116] Length = 196 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 43/106 (40%), Gaps = 1/106 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R+ ++++ +G G+T V K+EK + ++L+ ++E + Sbjct: 4 LGQRLEELRVNNRLTKKDVGHVAGVTGTTVDKWEKDLIIPRDAKLKRLAEHYNVSFEWLR 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 E V S +G + + ++ ++++ Sbjct: 64 VGVDGAKVTPVPESFAVS-IQSYKEGDESVFFDARLLPSGHSERLV 108 >gi|91225430|ref|ZP_01260552.1| transcriptional regulator, HTH_3 family protein [Vibrio alginolyticus 12G01] gi|91189793|gb|EAS76066.1| transcriptional regulator, HTH_3 family protein [Vibrio alginolyticus 12G01] Length = 207 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R LG++ E+ + G+ + K E +Q ++ L+ + F Sbjct: 28 LGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQAMQKLALGLQIDMPQLF 87 Query: 75 D 75 + Sbjct: 88 E 88 >gi|223933601|ref|ZP_03625581.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|302024367|ref|ZP_07249578.1| DNA-binding protein [Streptococcus suis 05HAS68] gi|330833364|ref|YP_004402189.1| XRE family transcriptional regulator [Streptococcus suis ST3] gi|223897727|gb|EEF64108.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|329307587|gb|AEB82003.1| transcriptional regulator, XRE family [Streptococcus suis ST3] Length = 62 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 30/58 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R++LG+SQ L + +G++ Q V E ++++ L++ ++ F Sbjct: 2 NRVKDYRLLLGISQLDLAKAIGVSRQTVNMIENNKYNPSLDLCINLAKALQTDLNSLF 59 >gi|318057356|ref|ZP_07976079.1| hypothetical protein SSA3_05416 [Streptomyces sp. SA3_actG] gi|318075878|ref|ZP_07983210.1| hypothetical protein SSA3_03995 [Streptomyces sp. SA3_actF] Length = 388 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 36/68 (52%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R + G+++ ++ + +G++ V +YE G NR + +++VL+ PI FF Sbjct: 29 RLTQARRLAGLTKREVADGIGVSAAAVGQYEAGTNRPRPELIPRLADVLDVPIQFFVAGR 88 Query: 78 PTVCSDIS 85 P D S Sbjct: 89 PMGKVDSS 96 >gi|311031695|ref|ZP_07709785.1| Predicted transcriptional regulator, xre family protein [Bacillus sp. m3-13] Length = 120 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 41/113 (36%), Gaps = 1/113 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+G+ IR R M+ +L + + ++KYE G+ + IS VL+ P S Sbjct: 2 RNIGENIRFYRERAKMTAAELALKIRVGTGTIEKYEAGLQTPDMQTILKISTVLDVPASE 61 Query: 73 FFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + + + E ++ + + R D + L Sbjct: 62 LLESFTSKNSTGLDPELEELIKEVGIKRAKLILRKAKDYTDEDFLNVMQILYE 114 >gi|310827340|ref|YP_003959697.1| hypothetical protein ELI_1748 [Eubacterium limosum KIST612] gi|308739074|gb|ADO36734.1| hypothetical protein ELI_1748 [Eubacterium limosum KIST612] Length = 71 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++Q +LG+ G++ Q + E+G + I+ + + + F Sbjct: 5 NRLKEFRARDKINQSELGKLAGVSRQTISLIERGDYSPSVTLALKIARIFNTSVEDIFTY 64 Query: 77 SPTVCSD 83 S S+ Sbjct: 65 SDEEDSE 71 >gi|317130366|ref|YP_004096648.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] gi|315475314|gb|ADU31917.1| helix-turn-helix domain protein [Bacillus cellulosilyticus DSM 2522] Length = 302 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 2/95 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+I R + MSQ +L E + T V + E G + + L + Sbjct: 5 VPIGKKILHYRKSIDMSQGELAEGI-CTQAFVSQIESGNAIPNIVIFRGLLNRLGVSYEY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 FF + E +D + + + F Sbjct: 64 FFQ-EERPYASYFDEVEKAIDTLKRKRDYKGIKQF 97 >gi|229550955|ref|ZP_04439680.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|229315670|gb|EEN81643.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] Length = 290 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 26/73 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R+ M+Q L + L ++ V +E N + I+ + + Sbjct: 93 KQLQQIRIAHSMTQADLAQQLHVSRHTVSNWENERNLPDLETVTQIARIFSVSLDTLILD 152 Query: 77 SPTVCSDISSEEN 89 + + + Sbjct: 153 DSELNEKLIKDSK 165 >gi|218516214|ref|ZP_03513054.1| putative transcriptional regulator protein [Rhizobium etli 8C-3] Length = 89 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 22/43 (51%), Positives = 31/43 (72%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 +PVD +VG++IR+RRM +S LG +G++ QQVQKYE G Sbjct: 47 HPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQQVQKYESGK 89 >gi|83951709|ref|ZP_00960441.1| hypothetical protein ISM_14140 [Roseovarius nubinhibens ISM] gi|83836715|gb|EAP76012.1| hypothetical protein ISM_14140 [Roseovarius nubinhibens ISM] Length = 219 Score = 42.9 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 8/78 (10%) Query: 5 KKIPNPV--------DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 K+ P+ + ++ +G+ +R R M+ L E G++ + K E G Sbjct: 14 KQDPHKITPNKERVLEVAIGREVRSLRQSQRMTVTDLSEATGLSPGMLSKIENGGTSASL 73 Query: 57 SRLQHISEVLESPISFFF 74 + L ++ L PI+ FF Sbjct: 74 TTLVTLARALSVPITDFF 91 >gi|327396677|dbj|BAK14098.1| HTH-type transcriptional regulator PuuR [Pantoea ananatis AJ13355] Length = 203 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 37/85 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V+IN+G R++L R M+ ++L + ++ + + E+ + L+ + VL Sbjct: 14 SAVEINIGVRLKLIRKSRNMTIKELAQQANVSAGAISQIERNLANPTVRVLEQLRVVLNV 73 Query: 69 PISFFFDVSPTVCSDISSEENNVMD 93 P++ F + + + Sbjct: 74 PLTAFLEQHEVMRPGAEHYVRRWRE 98 >gi|325568792|ref|ZP_08145085.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157830|gb|EGC69986.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 82 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 24/64 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R + R G+S +++ + L +++ YE G L H + + + + + Sbjct: 15 RFKFLREERGLSPKEVCQHLDVSYPDYTLYEAGDRLPDVLTLLHAASLYNVSVDYLLGQT 74 Query: 78 PTVC 81 Sbjct: 75 ERPE 78 >gi|317403733|gb|EFV84218.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 194 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 6/93 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M GNK+ + +R+R R + ++ G++ + K E G+ L Sbjct: 1 MQGNKQSV------LAQRLRALRQARDWTLKQAALATGVSASTLSKIENGLLSPTYDNLI 54 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 I+ LE ++ F S + + Sbjct: 55 KIAAGLELDVAELFTASDAHMGTGRRSLSRQGE 87 >gi|301054815|ref|YP_003793026.1| putative DNA-binding protein [Bacillus anthracis CI] gi|300376984|gb|ADK05888.1| putative DNA-binding protein; possible transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 374 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 22/138 (15%), Positives = 51/138 (36%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I++ K I +R ++QE+L +GIT V K+E G + + L ++ I Sbjct: 4 ISIHKVIADKRKEKRITQEELAAYIGITKASVSKWETGQSYPDITLLPLLASYFNISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD--------GLQLNRYFIQIDDVKVRQKIIEL-V 123 P + + + + + ++ + + + ++ I+ + Sbjct: 64 LISYKPQMEQEDIKNLYHRLAEAFSEKPFDEVMMECRKIIKKYYSCFPLLIQIGILFINH 123 Query: 124 RSIVSSEKKYRTIEEECM 141 + + + I EE M Sbjct: 124 QMLTEDTDRRIEILEEAM 141 >gi|300088555|ref|YP_003759077.1| XRE family transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528288|gb|ADJ26756.1| transcriptional regulator, XRE family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 145 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 49/115 (42%), Gaps = 10/115 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R RR+ + ++ ++L + GI+ + + E+G A L ++ L+ + Sbjct: 15 ELGAVLRRRRLEIPLTLQELADRSGISVSHIGRIERGERFPSAKVLLRLACHLQYEENEL 74 Query: 74 FDVS-----PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F ++ P I + + + L R + V+V++ ++ L+ Sbjct: 75 FALAGYLTPPESPGSIDASPADRTPRLDPQVARILAR-----EPVEVQRSVVSLL 124 >gi|281425108|ref|ZP_06256021.1| DNA-binding protein [Prevotella oris F0302] gi|299142132|ref|ZP_07035265.1| DNA-binding protein [Prevotella oris C735] gi|281400952|gb|EFB31783.1| DNA-binding protein [Prevotella oris F0302] gi|298576221|gb|EFI48094.1| DNA-binding protein [Prevotella oris C735] Length = 184 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R+R R +L + E++ E GI+ K E G RL IS+ + Sbjct: 6 KQIGERLRGLRDVLDIPAEEVAELCGISLDHYLKIEAGEADPSVYRLSKISKRYGISLDV 65 Query: 73 FFDVSPTVCS 82 S Sbjct: 66 LLFGEEPRMS 75 >gi|254776178|ref|ZP_05217694.1| hypothetical protein MaviaA2_16110 [Mycobacterium avium subsp. avium ATCC 25291] Length = 391 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 44/115 (38%), Gaps = 6/115 (5%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G+S LG+ +V+ +E G ++L+ +EV + ++ FF P Sbjct: 6 LRWARESCGLSALAAARKLGLPDDRVEAWEAGRAVPTIAQLRKAAEVYKRSLAVFFLSEP 65 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 D + + + +L+ F + + + + +E++ Sbjct: 66 PEGFDTLRDFRRLDGTQAGHWSPELHEEFRRAHTQR------DFALELAETEERE 114 >gi|229002522|ref|ZP_04160600.1| hypothetical protein bmyco0003_56410 [Bacillus mycoides Rock3-17] gi|228758584|gb|EEM07719.1| hypothetical protein bmyco0003_56410 [Bacillus mycoides Rock3-17] Length = 213 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 7/97 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R + G+S++++ E L + +E G S L +IS + I+ + Sbjct: 101 ENLKRLRTLKGLSRKQISEELNTPYSTYAGWENGFREPDISTLNNISSYHKVSINDLLN- 159 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + + T L ++ + D Sbjct: 160 ------PETIIREEDKLKLITRLSTNLFETYMSVPDE 190 Score = 40.2 bits (92), Expect = 0.094, Method: Composition-based stats. Identities = 17/129 (13%), Positives = 52/129 (40%), Gaps = 12/129 (9%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ +G+ ++ R + ++Q+++ L I++ +E + ++ S + I Sbjct: 5 NLFLGENLKHLRKLQQLTQKEVASKLDISYYAYNNWENSLREPDLLSIKKFSIYYDILID 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + I+ E+ L + + ++D + Q+ ++ +R++ + Sbjct: 65 ELVNTRILSSKPINISEDR----------LNIIKKLTKLDVLNPLQENLKRLRTLKGLSR 114 Query: 132 KYRTIEEEC 140 K + EE Sbjct: 115 KQIS--EEL 121 >gi|222151919|ref|YP_002561079.1| hypothetical protein MCCL_1676 [Macrococcus caseolyticus JCSC5402] gi|222121048|dbj|BAH18383.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 283 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRI+ RR L M+Q +L + + T Q+ K EK AS L I+E LE + Sbjct: 1 MKIGKRIKNRRQQLNMTQGELSDGI-CTQSQISKIEKDEIIPLASLLVKIAEKLEVSLDD 59 Query: 73 F 73 Sbjct: 60 L 60 >gi|254387310|ref|ZP_05002567.1| regulatory protein [Streptomyces sp. Mg1] gi|194346112|gb|EDX27078.1| regulatory protein [Streptomyces sp. Mg1] Length = 459 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 45/118 (38%), Gaps = 3/118 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R++ R LG++Q +L + T + E G R + L+ ++ L + Sbjct: 14 EIGRRVQRLRTGLGLTQRQLAD-PAYTPAYISTLESGKVRPSETALRFLAGRLGTSYEEL 72 Query: 74 FDVSPTV-CSDISSEENNVMDFISTPDGLQLNRYFIQ-IDDVKVRQKIIELVRSIVSS 129 P +++ + ++T + + + + D + E +++ Sbjct: 73 ATGRPAHLATELRLGLTDAQRALATGAADEAAVRYRRLLTDAEHLDLTAERAEALLGL 130 >gi|153810198|ref|ZP_01962866.1| hypothetical protein RUMOBE_00579 [Ruminococcus obeum ATCC 29174] gi|149833377|gb|EDM88458.1| hypothetical protein RUMOBE_00579 [Ruminococcus obeum ATCC 29174] Length = 87 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 6/82 (7%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQ-----QVQKYEKGVNRVGASRLQ 60 K N + +G+R++ R ++Q+ L L + + + E+G V + Sbjct: 7 KKTNSKNR-IGQRVKELRKAHNLTQKTLAAKLQLAGYDFNDLAILRIEQGTRFVPDYEVV 65 Query: 61 HISEVLESPISFFFDVSPTVCS 82 ++EV + ++ Sbjct: 66 ALAEVFNVSCEYLLGLTDAPTK 87 >gi|310644825|ref|YP_003949584.1| transcription factor,eukaryotic mbf1-like protein [Paenibacillus polymyxa SC2] gi|309249776|gb|ADO59343.1| Predicted transcription factor,eukaryotic MBF1-like protein [Paenibacillus polymyxa SC2] Length = 114 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 2/106 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RIR R G++Q+KL + + ++ + E+G L+ + L IS Sbjct: 6 KQIGTRIRAIRNAKGLTQQKLADIASLDYRYIGALERGERNFSIDTLEKVLTALNVSISE 65 Query: 73 FFDVSPTVCSDISSEENNVMDF--ISTPDGLQLNRYFIQIDDVKVR 116 + +D + + +F +++ + ++ R Sbjct: 66 LMFSEEHMTTDEMIRQEAIDEFVALTSRLNDEQISILRRVSKEVSR 111 >gi|270157300|ref|ZP_06185957.1| putative transcriptional regulator [Legionella longbeachae D-4968] gi|289164315|ref|YP_003454453.1| DNA-binding transcriptional regulator [Legionella longbeachae NSW150] gi|269989325|gb|EEZ95579.1| putative transcriptional regulator [Legionella longbeachae D-4968] gi|288857488|emb|CBJ11320.1| putative DNA-binding transcriptional regulator [Legionella longbeachae NSW150] Length = 187 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 30/76 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + K ++ R G S ++ G++ + + E+ + + L I+ ++ Sbjct: 4 ISKRIAKTLKSLRQERGWSLDRTALETGVSKAMLGQIEREESSPTIATLWKIASGFQTSF 63 Query: 71 SFFFDVSPTVCSDISS 86 S F + + ++ Sbjct: 64 SSFIEDTLDSSANPIH 79 >gi|266624214|ref|ZP_06117149.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288863957|gb|EFC96255.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 94 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R+ M+Q +L + LG+T + YE G+ L HI+++ + + Sbjct: 5 GNTLKTLRLQENMTQAQLSQKLGLTKSVISAYETGLRLPSYDVLIHIAQIFKVSTDYLLG 64 Query: 76 VSPTVCSDIS 85 V D+S Sbjct: 65 VEHKDSLDLS 74 >gi|229195999|ref|ZP_04322751.1| Transcriptional regulator, Xre [Bacillus cereus m1293] gi|228587381|gb|EEK45447.1| Transcriptional regulator, Xre [Bacillus cereus m1293] Length = 404 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTAL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 75 DVSP 78 + Sbjct: 63 EEDD 66 >gi|270284174|ref|ZP_05965683.2| putative helix-turn-helix protein [Bifidobacterium gallicum DSM 20093] gi|270277253|gb|EFA23107.1| putative helix-turn-helix protein [Bifidobacterium gallicum DSM 20093] Length = 365 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + R M+QE+L +G++ Q + K+E G +L I ++ + Sbjct: 22 NLVSLRANRHMTQEQLAMLVGVSRQAISKWESGKAYPEMDKLLIICDLFTVSLDDLVLGD 81 Query: 78 PTVCSDIS 85 T + + Sbjct: 82 VTQPAPPA 89 >gi|255655389|ref|ZP_05400798.1| putative phage regulatory protein [Clostridium difficile QCD-23m63] gi|296451377|ref|ZP_06893115.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296880273|ref|ZP_06904238.1| probable phage regulatory protein [Clostridium difficile NAP07] gi|296259793|gb|EFH06650.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296428716|gb|EFH14598.1| probable phage regulatory protein [Clostridium difficile NAP07] Length = 139 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI R + Q +L E LG + K+E+ + + L+ ISE+ + + Sbjct: 4 LGERIVYLRKAKNLKQYELEEMLGCDN--LSKFERNIRKPNYEILKSISEIFNVSVDWLL 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ--LNRYFIQIDDVKVRQKIIELVR-SIVSSEK 131 + +++ +++ + + L F +++D + KI ++ + EK Sbjct: 62 NGDNLSHKSDLICDSSSNYPLNSINSNEIKLLNNFRKLNDYD-KAKIEGMIELKLHEYEK 120 Query: 132 KY 133 Sbjct: 121 DK 122 >gi|168213632|ref|ZP_02639257.1| putative DNA-binding protein [Clostridium perfringens CPE str. F4969] gi|170714789|gb|EDT26971.1| putative DNA-binding protein [Clostridium perfringens CPE str. F4969] Length = 290 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 30/63 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R +G++Q++LGE + + ++KYE G + S L + ++ + Sbjct: 6 LGNNIKKYRNQIGLTQKELGEKILKSEISIRKYESGKINIPPSTLFELCKIFNVTLGTLL 65 Query: 75 DVS 77 Sbjct: 66 GDD 68 >gi|167760938|ref|ZP_02433065.1| hypothetical protein CLOSCI_03326 [Clostridium scindens ATCC 35704] gi|167661541|gb|EDS05671.1| hypothetical protein CLOSCI_03326 [Clostridium scindens ATCC 35704] Length = 112 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 45/112 (40%), Gaps = 11/112 (9%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RI+ R G++Q +L E L ++ + + E G + + I++ L F Sbjct: 8 GQRIQEIRKAQGITQNQLAEKLHVSPSFISRIENGSSSLTVDFACEIADALHVARQEIFC 67 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + + + +D IS + + + + + +I+ ++ + Sbjct: 68 DL------LINYQTEEVDSISQKIEINI-----KKFPTQKQDEILAVIEFLA 108 >gi|163734588|ref|ZP_02142027.1| helix-turn-helix domain protein, putative [Roseobacter litoralis Och 149] gi|161392081|gb|EDQ16411.1| helix-turn-helix domain protein, putative [Roseobacter litoralis Och 149] Length = 135 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 11/124 (8%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R M+Q +L LG+ ++ +E ++ A+RL ++ +L + + + Sbjct: 16 GDRLAAARETSEMTQAELARRLGVRVATLRSWENDLSEPRANRLSMMAGLLNVSMMWLIN 75 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 E S + L R ++R ++ V + EKK R Sbjct: 76 GQGEGLDAPMEERTL---PASASEVLNEMR--------ELRTDMMARVEQMGRLEKKLRL 124 Query: 136 IEEE 139 + Sbjct: 125 ALRD 128 >gi|154686724|ref|YP_001421885.1| SinR [Bacillus amyloliquefaciens FZB42] gi|154352575|gb|ABS74654.1| SinR [Bacillus amyloliquefaciens FZB42] Length = 113 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G+RI+ R G S +L E G+ + E+ L+ +S VL+ + Sbjct: 4 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 63 Query: 74 FDVSPTVCSDISSEEN 89 D D + Sbjct: 64 LDEKHETEYDGQLDSE 79 >gi|148266050|ref|YP_001232756.1| helix-turn-helix domain-containing protein [Geobacter uraniireducens Rf4] gi|146399550|gb|ABQ28183.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4] Length = 356 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 2/94 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECL--GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+R+ R + GMS + E + +++ + +YE G L +++VL+ P+ FF Sbjct: 11 GRRLSQARRMRGMSLRAVAEAIGGKVSYNALHRYECGEMMPSDDVLIPVADVLDKPLDFF 70 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 F ++ + + S +L F Sbjct: 71 FRPFTVELRELRFRKTTGLGAKSEDAVKELATDF 104 >gi|91780476|ref|YP_555683.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91693136|gb|ABE36333.1| transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 109 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R+ G++QE+LG GI +V +YEKG + Q ++ L P F Sbjct: 14 RRLKQARLRSGLTQEQLGIHAGIDEFSASARVNQYEKGKHTPAIQTSQRLARALLVPTGF 73 Query: 73 FFDVSP 78 ++ Sbjct: 74 LYEDDD 79 >gi|15903016|ref|NP_358566.1| hypothetical protein spr0972 [Streptococcus pneumoniae R6] gi|116515940|ref|YP_816428.1| hypothetical protein SPD_0951 [Streptococcus pneumoniae D39] gi|148989105|ref|ZP_01820495.1| hypothetical protein CGSSp6BS73_04220 [Streptococcus pneumoniae SP6-BS73] gi|149019666|ref|ZP_01834985.1| hypothetical protein CGSSp23BS72_03668 [Streptococcus pneumoniae SP23-BS72] gi|168491958|ref|ZP_02716101.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|168494498|ref|ZP_02718641.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|221231810|ref|YP_002510962.1| DNA_binding protein [Streptococcus pneumoniae ATCC 700669] gi|225854561|ref|YP_002736073.1| hypothetical protein SPJ_1004 [Streptococcus pneumoniae JJA] gi|15458585|gb|AAK99776.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116076516|gb|ABJ54236.1| conserved hypothetical protein [Streptococcus pneumoniae D39] gi|147925328|gb|EDK76406.1| hypothetical protein CGSSp6BS73_04220 [Streptococcus pneumoniae SP6-BS73] gi|147931041|gb|EDK82021.1| hypothetical protein CGSSp23BS72_03668 [Streptococcus pneumoniae SP23-BS72] gi|183573788|gb|EDT94316.1| conserved domain protein [Streptococcus pneumoniae CDC0288-04] gi|183575609|gb|EDT96137.1| conserved domain protein [Streptococcus pneumoniae CDC3059-06] gi|220674270|emb|CAR68810.1| putative DNA_binding protein [Streptococcus pneumoniae ATCC 700669] gi|225724252|gb|ACO20105.1| conserved domain protein [Streptococcus pneumoniae JJA] gi|301794185|emb|CBW36602.1| putative DNA_binding protein [Streptococcus pneumoniae INV104] gi|332202922|gb|EGJ16990.1| helix-turn-helix family protein [Streptococcus pneumoniae GA47901] Length = 73 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R ++Q+++ + L T K E+G + + A L +S + + ++ Sbjct: 3 RRLRDLREDHDLTQKQIAKILSFTNSAYAKIERGEHTLTADVLVTLSNFYDVSTDYLLEL 62 Query: 77 SP 78 + Sbjct: 63 TD 64 >gi|29375456|ref|NP_814610.1| Cro/CI family transcriptional regulator [Enterococcus faecalis V583] gi|256854283|ref|ZP_05559647.1| transcriptional regulator [Enterococcus faecalis T8] gi|257421117|ref|ZP_05598107.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|294781282|ref|ZP_06746628.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|300859696|ref|ZP_07105784.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|29342916|gb|AAO80680.1| transcriptional regulator, Cro/CI family [Enterococcus faecalis V583] gi|256709843|gb|EEU24887.1| transcriptional regulator [Enterococcus faecalis T8] gi|257162941|gb|EEU92901.1| cro/CI family transcriptional regulator [Enterococcus faecalis X98] gi|294451618|gb|EFG20074.1| DNA-binding protein [Enterococcus faecalis PC1.1] gi|295113927|emb|CBL32564.1| Predicted transcriptional regulators [Enterococcus sp. 7L76] gi|300850514|gb|EFK78263.1| helix-turn-helix protein [Enterococcus faecalis TUSoD Ef11] gi|323480052|gb|ADX79491.1| helix-turn-helix family protein [Enterococcus faecalis 62] Length = 82 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I + R + M+Q+ L +G++ Q + + E+ I+ V I F Sbjct: 13 IHVYRAMARMTQQDLANRVGVSRQTIIQLERNKYNPSLLLAHDIANVFGVTIDDVFTFKE 72 Query: 79 TVCSDISSEE 88 T+ D+ E Sbjct: 73 TLNDDVEQEA 82 >gi|312978143|ref|ZP_07789887.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] gi|310894861|gb|EFQ43931.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] Length = 122 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R G S+ K + LG++ Q+ +E ++ L I+ + E+ + Sbjct: 6 QRIKNLRDSKGWSKSKTAQMLGVSAQRYSNWEYDLHEPDYEMLNQIAALFETTTDYLTGK 65 Query: 77 SPTVCSDISSEE 88 S S+ ++++ Sbjct: 66 SDNPSSESTAKD 77 >gi|311108201|ref|YP_003981054.1| hypothetical protein AXYL_05033 [Achromobacter xylosoxidans A8] gi|310762890|gb|ADP18339.1| helix-turn-helix family protein 11 [Achromobacter xylosoxidans A8] Length = 302 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 4/100 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R I GM+++ L + G++ + + E GV L I+ ++ Sbjct: 19 VALGERVRRLRAIRGMTRKGLSQVTGVSERHLANLEHGVGNASILVLLQIARAFNCALAE 78 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + S + + + +S L R + Sbjct: 79 LVGD----VTTESPDWLLIRELLSGRTESDLQRAREALTQ 114 >gi|302524894|ref|ZP_07277236.1| regulatory protein [Streptomyces sp. AA4] gi|302433789|gb|EFL05605.1| regulatory protein [Streptomyces sp. AA4] Length = 202 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 6/118 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + V VG R+R R + L E GI+ + + E G + L Sbjct: 7 MSEDDQDLGEVLHAVGPRLRTLRKQRNATLTGLSETTGISVSTLSRLESGQRKPTLELLL 66 Query: 61 HISEVLESPISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + P+ P + ++ G R + + Sbjct: 67 ALARAYQVPLDELVGAPPPGDPRLNPKPFVRHGRTYLPLTRRPGG--LRAYKMTLPPE 122 >gi|269838163|ref|YP_003320391.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] gi|269787426|gb|ACZ39569.1| transcriptional regulator, XRE family [Sphaerobacter thermophilus DSM 20745] Length = 367 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR R GM+ + L GI+ + + E+ + L I+EVL I F Sbjct: 9 IGPAIRRLRQERGMTLDALAAQAGISASHLSRLERSQTLPSFTVLAKIAEVLGVGIDEFV 68 Query: 75 DVSPT 79 + Sbjct: 69 RLERD 73 >gi|238853499|ref|ZP_04643875.1| helix-turn-helix domain protein [Lactobacillus gasseri 202-4] gi|238833857|gb|EEQ26118.1| helix-turn-helix domain protein [Lactobacillus gasseri 202-4] Length = 264 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK ++ R+ LG+SQ ++ + +T K E+G++ + A L I E + IS Sbjct: 1 MQIGKELKKLRLELGLSQTEMVGDI-LTKSYYSKIERGLHEINAKDLIEILERNKVNISD 59 Query: 73 FFDVSPTVCSD 83 FF + Sbjct: 60 FFKGIESKEKS 70 >gi|27376780|ref|NP_768309.1| hypothetical protein bll1669 [Bradyrhizobium japonicum USDA 110] gi|27349922|dbj|BAC46934.1| bll1669 [Bradyrhizobium japonicum USDA 110] Length = 108 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 12/110 (10%), Positives = 41/110 (37%), Gaps = 15/110 (13%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R ++ ++L G++ + + + R +L +++ L + + Sbjct: 11 RIKTLRKKAKLTLDQLAPQAGLSKSYLWELENRDLPRPSGEKLAGLAKALNVTVDYLLGG 70 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 PT + + ++ ++ + + R ++ L +++ Sbjct: 71 DPTENLETAEDKAFFREYEA--------------MSPEARAQLRRLAKAL 106 >gi|28379654|ref|NP_786546.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|300769600|ref|ZP_07079486.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28272494|emb|CAD65418.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|300493015|gb|EFK28197.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 212 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 7/61 (11%), Positives = 27/61 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++++ R ++Q ++ E L ++ + + +E + L +S++ + + Sbjct: 5 EKLKVCRKHAQLTQSQVAEQLHVSRKTISGWENDHSFPDVGSLVQLSDIYDVRLDDLMRD 64 Query: 77 S 77 Sbjct: 65 D 65 >gi|114567544|ref|YP_754698.1| hypothetical protein Swol_2033 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338479|gb|ABI69327.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 64 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R LG QE L CLG+T Q + E ++++L + + F Sbjct: 3 NNIKELRKALGYRQEDLAACLGVTRQTINAIENQKYNPTLELAMKLAKLLGTNVEELF 60 >gi|332687092|ref|YP_004456866.1| Cro/CI family transcriptional regulator [Melissococcus plutonius ATCC 35311] gi|332371101|dbj|BAK22057.1| transcriptional regulator, Cro/CI family [Melissococcus plutonius ATCC 35311] Length = 89 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 34/82 (41%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P + I + R + M+Q++L +G++ Q + + E+ I++V Sbjct: 1 MPKKKNSAFDSSIHVYRAMKRMTQQELANRVGVSRQTIIQLERNKYNPSLLLAHDIADVF 60 Query: 67 ESPISFFFDVSPTVCSDISSEE 88 I F ++ S+E+ Sbjct: 61 GVTIEDIFTFKKLTDNENSTEQ 82 >gi|329116090|ref|ZP_08244807.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906495|gb|EGE53409.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 284 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 11/133 (8%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQ 60 +GNK +G+ ++ R + G +Q++L E L + + YEKG L+ Sbjct: 1 MGNKSN------ILGENLKKLRKLFGHTQDELAEILHFSKGNVISYYEKGERYPDQETLE 54 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFI----STPDGLQLNRYFIQIDDVKVR 116 IS+ + + + +S+ + + I L F Sbjct: 55 KISDYFHISLDDLLNQELSEPGRLSNYFEKMKNDIVGSTDDFFALFPKVNFSSGGFPAGY 114 Query: 117 QKIIELVRSIVSS 129 Q++ + SI + Sbjct: 115 QEVYSIHESISAD 127 >gi|319938878|ref|ZP_08013242.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811928|gb|EFW08194.1| transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 158 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 1 MIGDNIKSLRKTHDLTQPEFAKIVGISRNSLSRYENGTSSVSTELIDRICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + ++ I L++ + Sbjct: 61 VGEDKMLTPLEDYQLTLKVEVIKERGAAILSQLYR 95 >gi|308181887|ref|YP_003926015.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|308047378|gb|ADN99921.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 212 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 7/61 (11%), Positives = 26/61 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++++ R ++Q ++ E L ++ + + +E + L +S+ + + Sbjct: 5 EKLKVCRKHAQLTQSQVAEQLHVSRKTISGWENDHSFPDVGSLVQLSDSYDVRLDDLMRD 64 Query: 77 S 77 Sbjct: 65 D 65 >gi|300174085|ref|YP_003773251.1| putative transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299888464|emb|CBL92432.1| Putative transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] Length = 193 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 5/112 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R G+S L + G++ + K+E+G + S + I + + Sbjct: 12 LGRLIREMRQSRGVSANDLVQVTGLSHSVISKFERGQTDIQFSSMIKILSAMSLTLEDLC 71 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL-----QLNRYFIQIDDVKVRQKIIE 121 ++ +F + P L +LNR I + +V ++I+E Sbjct: 72 HAPMFTEFVVNEMAEKAYEFQNNPVVLETILNELNRRAILLRQEQVFKRILE 123 >gi|282853817|ref|ZP_06263154.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J139] gi|282583270|gb|EFB88650.1| putative UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Propionibacterium acnes J139] Length = 508 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VG+ IR R GM+Q +L E L + + + E G + + I+E LESPI Sbjct: 9 VGRLIRDARKQHGMTQNQLAEILKTSQSAIHRVESGTQNLSLEYINRITEALESPI 64 >gi|228930898|ref|ZP_04093868.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228828765|gb|EEM74431.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 127 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 8/125 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R S + + LGI YE G L I+++ ++ + Sbjct: 6 ERLSELRKSKKWSLQDTADQLGIAKSTYAGYETGYRWPSLQSLSKIADLFDTSADYILGR 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + S E + ++ + + IIE + + S + Sbjct: 66 TDDARSKDVIELAE----LMKNPDKTISIDGESLSTDE----IIEFIAFVRSKRELKSKR 117 Query: 137 EEECM 141 EE + Sbjct: 118 LEELL 122 >gi|228984873|ref|ZP_04145043.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774823|gb|EEM23219.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 404 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTAL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 75 DVSP 78 + Sbjct: 63 EEDD 66 >gi|255035160|ref|YP_003085781.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254947916|gb|ACT92616.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 189 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 45/112 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++I+ R G+SQE L E I + +Q+ E G L+ +++VL+ + Sbjct: 6 ISEQIKTLRRAKGLSQENLAESARINLRTLQRIEAGDTIPRGETLRLLAQVLDVRVESLT 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 + + + + F P G + + I+ ++ L + I Sbjct: 66 PTLAEDTAFLKLLNLSALAFWIFPFGNVIVPLVLWINKRNEVAGVMGLGKRI 117 >gi|89212744|gb|ABD63852.1| putative repressor [Lactococcus phage phismq86] gi|326407702|gb|ADZ64773.1| phage repressor [Lactococcus lactis subsp. lactis CV56] Length = 136 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 41/105 (39%), Gaps = 1/105 (0%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G++ ++L E +G T + ++E G N + +++ ++ + Sbjct: 12 VKTLRQQAGLTMKQLAEKMGKTESAISRWESGDNSPKLEDINALADFFNVDMNTLVYGAG 71 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 V + + + + + +L + K + +I LV Sbjct: 72 VVPKNEPFDISKLANTDDDAVWDKLVSSGGRPLTEKD-KAMIRLV 115 >gi|148556338|ref|YP_001263920.1| XRE family transcriptional regulator [Sphingomonas wittichii RW1] gi|148501528|gb|ABQ69782.1| transcriptional regulator, XRE family [Sphingomonas wittichii RW1] Length = 463 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 31/92 (33%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R G +Q+ + E LGI+ + E + A + ++E+ + I Sbjct: 9 GPRIKRLRRDHGHTQQAMAEMLGISDSYLALIEGNRRPLTAGLILKLAELFDFDIRSLSQ 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 P S + F + Sbjct: 69 EEPGGGSAAMRRRLSDPLFADLSIDRAELEAW 100 >gi|77163705|ref|YP_342230.1| XRE family transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|254435082|ref|ZP_05048589.1| Helix-turn-helix domain protein [Nitrosococcus oceani AFC27] gi|76882019|gb|ABA56700.1| transcriptional regulator, XRE family [Nitrosococcus oceani ATCC 19707] gi|207088193|gb|EDZ65465.1| Helix-turn-helix domain protein [Nitrosococcus oceani AFC27] Length = 86 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 35/73 (47%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K VD+++G+ +R+ R + +SQ +L E GI + E+ R+G R + Sbjct: 1 MSEYRKAGKRVDVSIGESVRILRELQELSQNELSEMTGIPQSTISAIERDRIRLGVERAK 60 Query: 61 HISEVLESPISFF 73 ++ L + Sbjct: 61 VLARALRCHPAVL 73 >gi|21242064|ref|NP_641646.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21107469|gb|AAM36182.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 461 Score = 42.5 bits (98), Expect = 0.017, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 10/134 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R G++Q +L L ++ + + E+ + + Q + L Sbjct: 11 QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRPLTLAIQQRLKTALGE----- 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVRSIVSSE 130 + + D + +D G L ++ +V Q +++L R+ Sbjct: 66 --LDGLLDLDDPAALVEPLDESLRSLGHTLLPAELRALTGNLPQVAQALLDLHRAHQHLL 123 Query: 131 KKYRTIEEECMVEQ 144 ++ +E + VE Sbjct: 124 ERNAALELQIGVEH 137 >gi|327472731|gb|EGF18158.1| transcriptional regulator [Streptococcus sanguinis SK408] Length = 71 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFWD 61 Query: 77 SPTVCSDISS 86 D Sbjct: 62 PQLTDEDSDD 71 >gi|311107907|ref|YP_003980760.1| hypothetical protein AXYL_04732 [Achromobacter xylosoxidans A8] gi|310762596|gb|ADP18045.1| helix-turn-helix family protein 10 [Achromobacter xylosoxidans A8] Length = 184 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 40/106 (37%), Gaps = 3/106 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R +S E+L + G+T + K E+G++ S + ++E +S Sbjct: 6 HRLRALRRQQTLSLEQLAQRTGLTKSYLSKLERGLSEPSISTVLRLAEAYGLGVSELVGT 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++ S GL ++ + R+K+ + Sbjct: 66 DDAAQEEVVSVVRVADREALQRRGLGSEYHYESL---AGRRKVKAM 108 >gi|296392464|ref|YP_003657348.1| XRE family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296179611|gb|ADG96517.1| transcriptional regulator, XRE family [Segniliparus rotundus DSM 44985] Length = 97 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 26/69 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ + RM G+ Q +L E GI+ + ++ E+G + + P ++ Sbjct: 18 RLLIARMEAGLEQSQLAERTGISVRTIRNAERGHTSPKQHVIYQWALATGVPATWLLTGQ 77 Query: 78 PTVCSDISS 86 + Sbjct: 78 DPNKNGGPD 86 >gi|291543303|emb|CBL16412.1| Helix-turn-helix [Ruminococcus sp. 18P13] Length = 120 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 38/105 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+RIR R G++Q +L E + + + E L ++ L Sbjct: 6 ILLGQRIRAFRTKKGITQMELAERIDRSAAYMSYVETAYKFCSLDTLVRVANELNVSTDD 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 S T S+ E + + +++ ++ +R+ Sbjct: 66 LLIDSLTNTIKASNHEFTAILSDCSDYEMRVLLDIVKATKQAMRE 110 >gi|291619608|ref|YP_003522350.1| PuuR [Pantoea ananatis LMG 20103] gi|291154638|gb|ADD79222.1| PuuR [Pantoea ananatis LMG 20103] Length = 203 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 15/85 (17%), Positives = 37/85 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V+IN+G R++L R M+ ++L + ++ + + E+ + L+ + VL Sbjct: 14 SAVEINIGVRLKLIRKSRNMTIKELAQQANVSAGAISQIERNLANPTVRVLEQLRVVLNV 73 Query: 69 PISFFFDVSPTVCSDISSEENNVMD 93 P++ F + + + Sbjct: 74 PLTAFLEQHEVMRPGAEHYVRRWRE 98 >gi|260437576|ref|ZP_05791392.1| addiction module antidote protein, HigA family [Butyrivibrio crossotus DSM 2876] gi|292809929|gb|EFF69134.1| addiction module antidote protein, HigA family [Butyrivibrio crossotus DSM 2876] Length = 352 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 54/133 (40%), Gaps = 5/133 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + + G I+ G++QE + L T + + +G + Sbjct: 1 MSSYVEYNDKIAFHPGYYIKEIIEDSGLTQEDFAKRLDTTPKNLSYLVRGEQSLSVDIAM 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN----RYFIQIDD-VKV 115 +S +L + I+++ ++ T + I+ + + +L+ + + + D + Sbjct: 61 KLSRMLGTSINYWLNLQQTYDTLIAEMDYQKEIKLEKEVFKELDYGYFKKYFGMPDLPRK 120 Query: 116 RQKIIELVRSIVS 128 + I++VRS + Sbjct: 121 INEQIDVVRSFLQ 133 >gi|239637715|ref|ZP_04678683.1| conserved hypothetical protein [Staphylococcus warneri L37603] gi|239596674|gb|EEQ79203.1| conserved hypothetical protein [Staphylococcus warneri L37603] Length = 66 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R MSQ++L +G++ Q + E +I++VL ++ F Sbjct: 5 NRVKQYRAHQKMSQQELARRIGVSRQTINMIENDKYNPSLKLCINIAKVLSVTLNDLFWE 64 Query: 77 SP 78 Sbjct: 65 GD 66 >gi|228936982|ref|ZP_04099724.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822697|gb|EEM68587.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 114 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 4/88 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G+ ++ R ++Q + G+ + ++ Q+ E N L I+ + + Sbjct: 5 GENLKKFRNNRSLTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFDISVDTLMG 64 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPD 99 F S D+ E V + Sbjct: 65 RKFTKSERQLEDVLDEIQTVFAGLDESQ 92 >gi|206968686|ref|ZP_03229641.1| transcriptional regulator AnsR [Bacillus cereus AH1134] gi|229182157|ref|ZP_04309444.1| HTH-type transcriptional regulator ansR [Bacillus cereus 172560W] gi|206735727|gb|EDZ52885.1| transcriptional regulator AnsR [Bacillus cereus AH1134] gi|228601331|gb|EEK58865.1| HTH-type transcriptional regulator ansR [Bacillus cereus 172560W] Length = 125 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 4/122 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R S ++ + LGI YE G L I+++ ++ + + Sbjct: 3 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYILGR 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + + + L + ++ I VRS K Sbjct: 63 IEHSHQNKDVID---ITRLLNDPDATLLVDGEALSTEEIID-FIAFVRSKRELSSKRIEN 118 Query: 137 EE 138 E Sbjct: 119 IE 120 >gi|138894812|ref|YP_001125265.1| hypothetical protein GTNG_1146 [Geobacillus thermodenitrificans NG80-2] gi|196247561|ref|ZP_03146263.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134266325|gb|ABO66520.1| Conserved hypothetical protein [Geobacillus thermodenitrificans NG80-2] gi|196212345|gb|EDY07102.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 300 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +GKR+R R +S ++L E I + + E+G + +E + Sbjct: 4 ELGKRLREAREEKQISLDELQEMTKIQKRYLIGIEEGNYAIMPGNFYVRAFIRQYAEAVG 63 Query: 68 SPISFFFDVSPTVCSDISSEE 88 F+ E+ Sbjct: 64 LDPDELFEQYKQDIPQSYQED 84 >gi|78067667|ref|YP_370436.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77968412|gb|ABB09792.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 104 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 27/62 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VGK IR+RR+ L +SQE L I + K E+G V L I+ L S Sbjct: 38 KEVGKAIRVRRLELDISQETLAHLANIDRSHMGKIERGERNVTLLNLLKIARALSCRPSE 97 Query: 73 FF 74 Sbjct: 98 LL 99 >gi|54026748|ref|YP_120990.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54018256|dbj|BAD59626.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 392 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 4/114 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G+R+R R G++Q +L + G++ ++K E+G V + ++ L S Sbjct: 5 LGERVRSVRKRRGLTQRELADASGLSVSLIRKLEQGDRPNVRVETARKLAVALRVRTSAL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + N L + DD + + VR++ Sbjct: 65 QAGHTDAEHADAETSNLWE---PVRRALVVPVRTDDADDPPTSRGVEAAVRALA 115 >gi|89896019|ref|YP_519506.1| hypothetical protein DSY3273 [Desulfitobacterium hafniense Y51] gi|219670447|ref|YP_002460882.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89335467|dbj|BAE85062.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540707|gb|ACL22446.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 123 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 45/122 (36%), Gaps = 6/122 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + +GK++R R +S +L + G+ + + E G + +++ L ++ Sbjct: 2 LELGKQLRKIRKDKKLSAAELSQISGVARSLISQLESGKRQSTSIDTVYRLAKALNVSVA 61 Query: 72 FFFDVSPTVCSDISSEENNVMDFI-----STPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 P I+ ++N+ + + L + ++ +I+++ I Sbjct: 62 SLLIEEPGTPPAIAYKQNDKKSPLYLKEHYSAYLPTLQKAEEAGLTPELLGSLIDVIARI 121 Query: 127 VS 128 Sbjct: 122 KK 123 >gi|315645456|ref|ZP_07898580.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315278934|gb|EFU42244.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 65 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++++ R+ +SQE+L + +G++ Q + E G S I + L ++ F Sbjct: 5 KLKMARVEKDLSQEELAQIVGVSRQTIGLIELGKYNPSLSLCVAICKALSRTLNDLFWDE 64 Query: 78 P 78 Sbjct: 65 D 65 >gi|312865953|ref|ZP_07726174.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098357|gb|EFQ56580.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 158 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 32/95 (33%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++ R ++Q + +GI+ + +YE G + V L I + Sbjct: 1 MIGDNLKALRKSHHLTQPEFAAMIGISRNSLSRYENGTSSVSTELLDRICQKFNVSYIDL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + ++ I L++ + Sbjct: 61 VGQEKMLGPVEDYQLTLKIEIIKERGAGILSQLYR 95 >gi|268610925|ref|ZP_06144652.1| XRE family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 68 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R M+Q++L L ++ + +YE G L I++ + I + + + Sbjct: 2 RLKELRKKKHMTQQRLAIELNMSQNTISRYETGEREADYKTLILIADYFQVSIDYLLERT 61 Query: 78 PTV 80 Sbjct: 62 DDP 64 >gi|221642312|ref|YP_002533399.1| transcriptional regulator, Cro/CI family [Bacillus cereus Q1] gi|221243247|gb|ACM15956.1| transcriptional regulator, Cro/CI family [Bacillus cereus Q1] Length = 66 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ L MSQ L +G+ + + E G I++VL++PI F Sbjct: 6 RMKEYRVKLNMSQGDLANKVGVRRETIGNLENGKYNPSLKLAYDIAKVLKAPIEVLFWFE 65 Query: 78 P 78 Sbjct: 66 D 66 >gi|254488462|ref|ZP_05101667.1| DNA-binding protein [Roseobacter sp. GAI101] gi|214045331|gb|EEB85969.1| DNA-binding protein [Roseobacter sp. GAI101] Length = 190 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ + L + L + + + E+ ++ + L+ +++ L +S F Sbjct: 12 LGADLRALRKARGLTLQGLADRLNRSVGWLSQVERDLSDPAITDLRQMAQALGVSVSMLF 71 >gi|210612788|ref|ZP_03289482.1| hypothetical protein CLONEX_01684 [Clostridium nexile DSM 1787] gi|314950371|ref|ZP_07853647.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|317501730|ref|ZP_07959917.1| hypothetical protein HMPREF1026_01861 [Lachnospiraceae bacterium 8_1_57FAA] gi|319937809|ref|ZP_08012211.1| hypothetical protein HMPREF9488_03047 [Coprobacillus sp. 29_1] gi|210151402|gb|EEA82410.1| hypothetical protein CLONEX_01684 [Clostridium nexile DSM 1787] gi|313643322|gb|EFS07902.1| helix-turn-helix protein [Enterococcus faecium TX0082] gi|316896852|gb|EFV18936.1| hypothetical protein HMPREF1026_01861 [Lachnospiraceae bacterium 8_1_57FAA] gi|319807039|gb|EFW03655.1| hypothetical protein HMPREF9488_03047 [Coprobacillus sp. 29_1] Length = 223 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 5/132 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL + Sbjct: 10 FLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPNEL 69 Query: 74 FDVS----PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I DF + D L N +F + + +L++ I + Sbjct: 70 LSGEWKYIDHTEPYIMDIIKREQDFNVSLDYLSENEFFDDEKECTFYKA-YKLIQYIHNY 128 Query: 130 EKKYRTIEEECM 141 T EE M Sbjct: 129 ITNEVTELEELM 140 >gi|254454323|ref|ZP_05067760.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] gi|198268729|gb|EDY92999.1| transcriptional regulator, XRE family [Octadecabacter antarcticus 238] Length = 148 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 41/100 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R + ++Q++L + +GI ++ +E+ ++ A+RL +S +L + + Sbjct: 36 GDRLAAARDVAQLTQKELAQRVGIKVSTLRNWEEDLSEPRANRLSILSGILGVSLRWLLT 95 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 D + L+ R ++ ++ Sbjct: 96 AEGEGLLAPDENAPIASDLSAILTELRAVRAQMKQSTERL 135 >gi|159026724|emb|CAO89038.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 75 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +K + GK IR RR L +SQE L E + + + G V ++ +++ Sbjct: 3 QKESLDIKHRFGKAIRRRRRELDLSQEILAEKAELHRTYISSIQLGKCNVSLENIEKLAK 62 Query: 65 VLESPISFFFDV 76 L+ I+ F Sbjct: 63 ALDISIADLFAD 74 >gi|30018643|ref|NP_830274.1| PbsX family transcriptional regulator [Bacillus cereus ATCC 14579] gi|30260558|ref|NP_842935.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47777808|ref|YP_017011.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|165870743|ref|ZP_02215396.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167634785|ref|ZP_02393104.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641241|ref|ZP_02399494.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170688950|ref|ZP_02880151.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170707213|ref|ZP_02897669.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177654526|ref|ZP_02936382.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190567478|ref|ZP_03020391.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196034760|ref|ZP_03102168.1| DNA-binding protein [Bacillus cereus W] gi|196040074|ref|ZP_03107376.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|196045277|ref|ZP_03112509.1| DNA-binding protein [Bacillus cereus 03BB108] gi|206967804|ref|ZP_03228760.1| DNA-binding protein [Bacillus cereus AH1134] gi|206974225|ref|ZP_03235142.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217957986|ref|YP_002336530.1| DNA-binding protein [Bacillus cereus AH187] gi|218233192|ref|YP_002365235.1| DNA-binding protein [Bacillus cereus B4264] gi|218895509|ref|YP_002443920.1| DNA-binding protein [Bacillus cereus G9842] gi|218901593|ref|YP_002449427.1| DNA-binding protein [Bacillus cereus AH820] gi|225862432|ref|YP_002747810.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227813061|ref|YP_002813070.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228919320|ref|ZP_04082690.1| hypothetical protein bthur0011_3480 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228963500|ref|ZP_04124657.1| hypothetical protein bthur0004_3810 [Bacillus thuringiensis serovar sotto str. T04001] gi|229051698|ref|ZP_04195159.1| hypothetical protein bcere0027_55960 [Bacillus cereus AH676] gi|229068140|ref|ZP_04201447.1| hypothetical protein bcere0025_3560 [Bacillus cereus F65185] gi|229108059|ref|ZP_04237684.1| hypothetical protein bcere0018_3500 [Bacillus cereus Rock1-15] gi|229143178|ref|ZP_04271610.1| hypothetical protein bcere0012_3510 [Bacillus cereus BDRD-ST24] gi|229159537|ref|ZP_04287552.1| hypothetical protein bcere0009_3430 [Bacillus cereus R309803] gi|229176977|ref|ZP_04304372.1| hypothetical protein bcere0005_3570 [Bacillus cereus 172560W] gi|229188657|ref|ZP_04315696.1| hypothetical protein bcere0002_3520 [Bacillus cereus ATCC 10876] gi|229601629|ref|YP_002865007.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254686779|ref|ZP_05150637.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724855|ref|ZP_05186638.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254738996|ref|ZP_05196698.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254744583|ref|ZP_05202262.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254756159|ref|ZP_05208188.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254761977|ref|ZP_05213826.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|296501215|ref|YP_003662915.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|301052106|ref|YP_003790317.1| PBSX family transcriptional regulator [Bacillus anthracis CI] gi|29894184|gb|AAP07475.1| Transcriptional regulator, PBSX family [Bacillus cereus ATCC 14579] gi|30253926|gb|AAP24421.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47551513|gb|AAT29486.2| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|164713577|gb|EDR19101.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510749|gb|EDR86142.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167529859|gb|EDR92607.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170127991|gb|EDS96862.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170667051|gb|EDT17813.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172080638|gb|EDT65721.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190561265|gb|EDV15237.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|195992803|gb|EDX56763.1| DNA-binding protein [Bacillus cereus W] gi|196023861|gb|EDX62536.1| DNA-binding protein [Bacillus cereus 03BB108] gi|196028929|gb|EDX67534.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|206736724|gb|EDZ53871.1| DNA-binding protein [Bacillus cereus AH1134] gi|206747465|gb|EDZ58855.1| DNA-binding protein [Bacillus cereus H3081.97] gi|217066337|gb|ACJ80587.1| DNA-binding protein [Bacillus cereus AH187] gi|218161149|gb|ACK61141.1| DNA-binding protein [Bacillus cereus B4264] gi|218534868|gb|ACK87266.1| DNA-binding protein [Bacillus cereus AH820] gi|218542669|gb|ACK95063.1| DNA-binding protein [Bacillus cereus G9842] gi|225788241|gb|ACO28458.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227005175|gb|ACP14918.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|228594846|gb|EEK52626.1| hypothetical protein bcere0002_3520 [Bacillus cereus ATCC 10876] gi|228606452|gb|EEK63878.1| hypothetical protein bcere0005_3570 [Bacillus cereus 172560W] gi|228623942|gb|EEK80753.1| hypothetical protein bcere0009_3430 [Bacillus cereus R309803] gi|228640259|gb|EEK96657.1| hypothetical protein bcere0012_3510 [Bacillus cereus BDRD-ST24] gi|228675334|gb|EEL30553.1| hypothetical protein bcere0018_3500 [Bacillus cereus Rock1-15] gi|228714954|gb|EEL66822.1| hypothetical protein bcere0025_3560 [Bacillus cereus F65185] gi|228721655|gb|EEL73138.1| hypothetical protein bcere0027_55960 [Bacillus cereus AH676] gi|228796194|gb|EEM43645.1| hypothetical protein bthur0004_3810 [Bacillus thuringiensis serovar sotto str. T04001] gi|228840427|gb|EEM85698.1| hypothetical protein bthur0011_3480 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229266037|gb|ACQ47674.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|296322267|gb|ADH05195.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|300374275|gb|ADK03179.1| transcriptional regulator, PBSX family [Bacillus cereus biovar anthracis str. CI] gi|326938175|gb|AEA14071.1| PbsX family transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 64 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 3 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60 >gi|322834913|ref|YP_004214940.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321170114|gb|ADW75813.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 95 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 34/72 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI R G++Q KL E LGI Q + YE ++ AS L +S +L+ I Sbjct: 21 LALGVRIAEARKSKGLTQRKLAEMLGIAQQTLAHYEVARLKLSASFLPELSRILDCTIDE 80 Query: 73 FFDVSPTVCSDI 84 + S + Sbjct: 81 LLGMEEKKESSL 92 >gi|313575261|emb|CBI71200.1| hypothetical protein [uncultured bacterium] Length = 75 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + IR R G M+Q++L + +G+T Q + E+ I+EV PI Sbjct: 6 ISNSIRRLRFDHGEMTQQELADRIGMTRQTIAAIEQNKYSPSLEAAFRIAEVFGVPIGDV 65 Query: 74 FDVSPTVCSD 83 F Sbjct: 66 FQWKADQPKG 75 >gi|313898798|ref|ZP_07832332.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956380|gb|EFR38014.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 206 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL+ + Sbjct: 5 FLGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLNYPAYDTLEKIMEVLDVTPNEL 64 Query: 74 FDVS 77 Sbjct: 65 LSGE 68 >gi|299143941|ref|ZP_07037021.1| transcriptional regulator, Cro/CI family [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518426|gb|EFI42165.1| transcriptional regulator, Cro/CI family [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 178 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 34/76 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++ R+ ++QE+L + +T + + E+ + + L I E L + Sbjct: 1 MDIGNKLKNLRVKQALTQEELADRSELTKGFISQVERNLTSPSVATLIDILEALGTTPLE 60 Query: 73 FFDVSPTVCSDISSEE 88 FF+ E+ Sbjct: 61 FFEDDVEEKIVFKKED 76 >gi|302562555|ref|ZP_07314897.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] gi|302480173|gb|EFL43266.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] Length = 384 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 20/130 (15%), Positives = 43/130 (33%), Gaps = 5/130 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R G+SQ ++ + + + E G R + +++ L S Sbjct: 8 GRRLKRLRTARGLSQAEVVGDGM-STGHLSRLESGGRRPTERTVAYLARRLGVDASALTG 66 Query: 76 V-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE---K 131 S + + + + L DD R + + L+ + + Sbjct: 67 PQDDGSLSGVLAAVVSAPPGTDSTAALDRAVEDDPGDDPAARWQALWLLSQAAGRDGDHR 126 Query: 132 KYRTIEEECM 141 RT E + Sbjct: 127 SERTRLLELL 136 >gi|229551472|ref|ZP_04440197.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|258540781|ref|YP_003175280.1| transcriptional regulator [Lactobacillus rhamnosus Lc 705] gi|229315155|gb|EEN81128.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|257152457|emb|CAR91429.1| Transcriptional regulator [Lactobacillus rhamnosus Lc 705] Length = 70 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 22/66 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R ++Q+ L + L ++ Q V E G +S V PI F Sbjct: 3 NRIETLRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIFID 62 Query: 77 SPTVCS 82 Sbjct: 63 ESADSK 68 >gi|228907416|ref|ZP_04071274.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] gi|228852277|gb|EEM97073.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] Length = 404 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R ++Q L +T + + E G LQ+I+E L SF Sbjct: 4 LGAKIKTLRKEKKLTQTDL-AGSVLTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVSP 78 + Sbjct: 63 EEDD 66 >gi|225571208|ref|ZP_03780206.1| hypothetical protein CLOHYLEM_07297 [Clostridium hylemonae DSM 15053] gi|225160039|gb|EEG72658.1| hypothetical protein CLOHYLEM_07297 [Clostridium hylemonae DSM 15053] Length = 114 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 5/93 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G+ + + ++ +RL R G+SQ++L LGI+ V YE+G + L+ Sbjct: 1 MKGSGPMADFANV-----LRLLRNGRGLSQQELALSLGISKSAVNMYERGERQPNFETLE 55 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 I++ + + + + D Sbjct: 56 LIADFFKVDTDYLLGRTNAARTAYPGTVAAHFD 88 >gi|188584169|ref|YP_001927614.1| XRE family transcriptional regulator [Methylobacterium populi BJ001] gi|179347667|gb|ACB83079.1| transcriptional regulator, XRE family [Methylobacterium populi BJ001] Length = 209 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 32/91 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R +S +L E G+ + + E+ + + +S+ L+ I Sbjct: 26 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 85 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S + +S ++L Sbjct: 86 LATSDEEPFIERFSRADTPRLVSDDGKVRLA 116 >gi|163733254|ref|ZP_02140698.1| DNA-binding protein [Roseobacter litoralis Och 149] gi|161393789|gb|EDQ18114.1| DNA-binding protein [Roseobacter litoralis Och 149] Length = 187 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 53/120 (44%), Gaps = 5/120 (4%) Query: 7 IPNPVDINVGK---RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + D +G+ R++ R + G+S + + + G++ V + E+G + S L +++ Sbjct: 1 MTEETDQILGQLPARLKDARRVQGLSLDAVAKLSGVSRSMVSQIERGESSPTISTLWNLT 60 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L+ + DV+ T + +V + GL++ + + + ++ ELV Sbjct: 61 RALQVDFAGLLDVAATKSKIETLRSGDVPTIENLGKGLRI--RILSPPEEAGKHEVYELV 118 >gi|153877010|ref|ZP_02004037.1| hypothetical protein BGP_5257 [Beggiatoa sp. PS] gi|152066527|gb|EDN65964.1| hypothetical protein BGP_5257 [Beggiatoa sp. PS] Length = 74 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++ R G+ + ++ LG +Q + ++E G + S ++E + Sbjct: 7 IGNNLKKLRNNRGLGKSEMAGELGTNYQNIGRWEGGQVDMKLSTFIQLAEFFDVSTDEL 65 >gi|163119252|ref|YP_077808.2| hypothetical protein BL02691 [Bacillus licheniformis ATCC 14580] gi|145902758|gb|AAU22170.2| hypothetical protein BL02691 [Bacillus licheniformis ATCC 14580] Length = 79 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R++ MSQ++L E +G++ Q + EKG I+E ++ F Sbjct: 9 ISNKVYEYRVLARMSQQELAEKVGVSKQTIFVMEKGNYVPTLLLAFRIAEFFNVDVNEIF 68 Query: 75 D 75 Sbjct: 69 T 69 >gi|110004082|emb|CAK98421.1| conserved hypothetical transcriptional regulator transcription regulator protein [Spiroplasma citri] Length = 177 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 50/116 (43%), Gaps = 8/116 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+L R ++ E+L +T + + E+ ++ L+ I EVL + ++ Sbjct: 1 MLLGEKIKLLRQKNNLTIEELANRCELTKGFISQLERDISSPSIETLESILEVLGTNLAD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL--------QLNRYFIQIDDVKVRQKII 120 FF ++EE+ ++ + +L IQI ++I+ Sbjct: 61 FFKQEKNRKFVYAAEEHYKVEQNNYRIEWLVPNAQVNELEPILIQIKPQGESERIL 116 >gi|45358556|ref|NP_988113.1| XRE family transcriptional regulator [Methanococcus maripaludis S2] gi|44921314|emb|CAF30549.1| conserved hypothetical helix-turn-helix protein [Methanococcus maripaludis S2] Length = 66 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R M+QE LG+ +G+ + + EKG IS+ L I F Sbjct: 4 RIKEYRAKYDMTQEDLGKIVGVRRETIGFLEKGKYNPSLKLAHAISKALNVKIDDLFIFE 63 Query: 78 PTV 80 Sbjct: 64 EDE 66 >gi|77405835|ref|ZP_00782918.1| conserved hypothetical protein [Streptococcus agalactiae H36B] gi|77409763|ref|ZP_00786418.1| transcription regulator, probable -related protein [Streptococcus agalactiae COH1] gi|77171623|gb|EAO74837.1| transcription regulator, probable -related protein [Streptococcus agalactiae COH1] gi|77175545|gb|EAO78331.1| conserved hypothetical protein [Streptococcus agalactiae H36B] Length = 79 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R+ +SQ L + +G+ Q + E ++E L++ ++ F Sbjct: 16 NRLREYRIKASISQLALAKSVGVARQTINLIENNKYNPSLDLCIRLAECLQTDLNTLFWD 75 Query: 77 S 77 S Sbjct: 76 S 76 >gi|330448854|ref|ZP_08312499.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493045|dbj|GAA06996.1| helix-turn-helix family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 103 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R GM+Q + + L + Q E G L IS + +++F P Sbjct: 11 LKQNREEHGMTQVDVAKHLKVARQTYLDLEYGRTLPRLDTLLAISSLFNKSVAYFTGERP 70 Query: 79 T 79 + Sbjct: 71 S 71 >gi|327473031|gb|EGF18458.1| cro/CI family transcriptional regulator [Streptococcus sanguinis SK408] Length = 170 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 9/114 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + F Sbjct: 9 GPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLFG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-----DVKVRQKIIELVR 124 S + + S E+N + ++ + I+ D + + ++ L R Sbjct: 69 TSKEIELEKSVLESNEY----SDKVSEILKAVKYIEHFLHTDGQYLEDLLYLTR 118 >gi|325927009|ref|ZP_08188283.1| transcriptional regulator [Xanthomonas perforans 91-118] gi|325542628|gb|EGD14096.1| transcriptional regulator [Xanthomonas perforans 91-118] Length = 461 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 10/134 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R G++Q +L L ++ + + E+ + + Q + L Sbjct: 11 QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRPLTLAIQQRLKSALGD----- 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVRSIVSSE 130 + + D + +D G L ++ +V Q +++L R+ Sbjct: 66 --LDGLLDLDDPAALVEPLDASLRSLGHTLLPAELRALTGNLPQVAQALLDLHRAHQHLL 123 Query: 131 KKYRTIEEECMVEQ 144 ++ +E + VE Sbjct: 124 ERNAALELQIGVEH 137 >gi|313114035|ref|ZP_07799589.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623655|gb|EFQ07056.1| helix-turn-helix protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 147 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 15/142 (10%), Positives = 45/142 (31%), Gaps = 14/142 (9%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N+K N ++ RI R G++QE+ + + ++ + E G + I Sbjct: 15 ENRKEVNKMN----ARIEAVRKHEGLTQEQFADRINLSRNYLWMLENGSRTPSDRTISDI 70 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 ++ + + + D +++ +E+ Sbjct: 71 CREFGVREAWLRTGEGE----------MFVQDTQSEQVAAFLADLTKDDSDTFKKRFVEM 120 Query: 123 VRSIVSSEKKYRTIEEECMVEQ 144 + + ++ + E + ++ Sbjct: 121 LAGLSPADWELLERMAEKLTQK 142 >gi|260889630|ref|ZP_05900893.1| putative prophage LambdaCh01, repressor protein [Leptotrichia hofstadii F0254] gi|260860236|gb|EEX74736.1| putative prophage LambdaCh01, repressor protein [Leptotrichia hofstadii F0254] Length = 219 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 33/80 (41%), Gaps = 6/80 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGEC------LGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +N+GKR++ R +S + L E L IT + ++E ++ + + ++ Sbjct: 1 MNIGKRLKELRKKNALSMDSLVEKLNRKYNLNITKSMISRWENNLSEPSSKFITAYAKFF 60 Query: 67 ESPISFFFDVSPTVCSDISS 86 +++ ++ S Sbjct: 61 NIDLNYLAGITDIKNPAPES 80 >gi|260843067|ref|YP_003220845.1| putative transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|260866991|ref|YP_003233393.1| putative transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|257758214|dbj|BAI29711.1| putative transcriptional regulator [Escherichia coli O103:H2 str. 12009] gi|257763347|dbj|BAI34842.1| putative transcriptional regulator [Escherichia coli O111:H- str. 11128] gi|323967329|gb|EGB62751.1| helix-turn-helix protein [Escherichia coli M863] Length = 94 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R G++QEKLG G+ + +YEKG + + ++++VL P+SF Sbjct: 5 RLKEARRRAGLTQEKLGILAGLDEASASTRINQYEKGKHSPNFETVSNLAKVLNVPVSFL 64 Query: 74 FDVSPTVCS 82 + + Sbjct: 65 YTPEDDLAQ 73 >gi|326204530|ref|ZP_08194387.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325985323|gb|EGD46162.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 111 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 40/96 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R +G+++E+ E +GI+ V + E+G + I++ L + F Sbjct: 10 IGLRIRSEREKIGLTREQFAEQVGISPLYVGQIERGQRAMSLKTFVKIADSLHANTDFLI 69 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 S + + + L+L +++ Sbjct: 70 YGIEERASGTDKDGVLNLLEKCSVRELKLAEEMLKL 105 >gi|299823094|ref|ZP_07054979.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] gi|307069497|ref|YP_003877975.1| transcriptional regulator [Listeria grayi] gi|299815503|gb|EFI82742.1| XRE family transcriptional regulator [Listeria grayi DSM 20601] gi|306480778|emb|CBV37319.1| transcriptional regulator [Listeria grayi] Length = 67 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R +SQ+ L E L ++ Q + EKG I++ E+ I F + Sbjct: 7 VKQLREDRNLSQKDLAEALEVSRQTIHAIEKGKYNPSLELSLCIAKYFETSIENIFYLEE 66 >gi|255283110|ref|ZP_05347665.1| putative transcriptional regulator [Bryantella formatexigens DSM 14469] gi|255266412|gb|EET59617.1| putative transcriptional regulator [Bryantella formatexigens DSM 14469] Length = 134 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 14/124 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R M+Q+K+ E GI + + YE V S + + Sbjct: 13 IGFVLKNARENKEMTQQKVMELTGINRKSLSGYENNVAEPDLSTFATLISLYGLSADAIL 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE---LVRSIVSSEK 131 ++SP + T QL F +D+ ++ +++ LV+ + + Sbjct: 73 NISPARPAPAL-----------TRYDRQLLSLFKTLDESHQKELLVQINALVKYLQKDVQ 121 Query: 132 KYRT 135 + Sbjct: 122 NKKE 125 >gi|153836404|ref|ZP_01989071.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus AQ3810] gi|260901662|ref|ZP_05910057.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus AQ4037] gi|149750306|gb|EDM61051.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus AQ3810] gi|308108916|gb|EFO46456.1| transcriptional regulator, HTH_3 family [Vibrio parahaemolyticus AQ4037] gi|328470597|gb|EGF41508.1| transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 207 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 33/77 (42%), Gaps = 3/77 (3%) Query: 2 VGNKKIPNPVDIN---VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 + K N +I +G+RI+ R LG++ E+ + G+ + K E Sbjct: 12 MTLAKEQNDQNIEPLKLGQRIKDIRSKLGITLEEASQRTGLARSTLSKIENEQISPTFQA 71 Query: 59 LQHISEVLESPISFFFD 75 +Q ++ L+ + F+ Sbjct: 72 MQKLALGLQIDMPQLFE 88 >gi|146319399|ref|YP_001199111.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146321603|ref|YP_001201314.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|253752422|ref|YP_003025563.1| DNA-binding protein [Streptococcus suis SC84] gi|253754248|ref|YP_003027389.1| DNA-binding protein [Streptococcus suis P1/7] gi|253756182|ref|YP_003029322.1| DNA-binding protein [Streptococcus suis BM407] gi|145690205|gb|ABP90711.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] gi|145692409|gb|ABP92914.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] gi|251816711|emb|CAZ52353.1| putative DNA-binding protein [Streptococcus suis SC84] gi|251818646|emb|CAZ56481.1| putative DNA-binding protein [Streptococcus suis BM407] gi|251820494|emb|CAR47248.1| putative DNA-binding protein [Streptococcus suis P1/7] gi|292559027|gb|ADE32028.1| Predicted transcriptional regulator [Streptococcus suis GZ1] gi|319758828|gb|ADV70770.1| transcriptional regulator [Streptococcus suis JS14] Length = 62 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 30/58 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R++LG+SQ L + +G++ Q + E ++++ L++ ++ F Sbjct: 2 NRVKDYRLLLGISQLDLAKAIGVSRQTINMIENNKYNPSLDLCINLAKALQTDLNSLF 59 >gi|124006854|ref|ZP_01691684.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134] gi|123987535|gb|EAY27244.1| helix-turn-helix domain protein [Microscilla marina ATCC 23134] Length = 212 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 30/74 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ KRI+ R G +Q+ + L I ++EK ++ +L+ I+ L + Sbjct: 1 MSISKRIKDIREQKGYTQKYMAGKLSIDQTNYGRFEKRGKKLTIEQLESIAAALGVSLKD 60 Query: 73 FFDVSPTVCSDISS 86 + S Sbjct: 61 ILFGEAEQTNPDLS 74 >gi|91783258|ref|YP_558464.1| XRE family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687212|gb|ABE30412.1| Putative transcriptional regulator, XRE family [Burkholderia xenovorans LB400] Length = 106 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 14/120 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +R++ R I G+SQ ++ + LG+ + + E G +V A L +E+ + + + Sbjct: 1 MSIAERLKEAREIAGLSQGQVAKRLGMHRPTISEIEAGRRKVAADELDLFAELYDVSVEW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + S V D + L R ++ D + +++ ++R + E K Sbjct: 61 IVNGS-------------VKDEAADARMLMAARELSKMSDQDL-DRLMNMLRMLRKGEDK 106 >gi|77414341|ref|ZP_00790498.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77159633|gb|EAO70787.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 68 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 21/55 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R SQE+ L ++ +E+G ++ I+ + + + Sbjct: 6 LKALRATKNWSQEEAARALKVSKDTWGNWERGNTEPSVTKAYQIAYIFDISLDDI 60 >gi|294626974|ref|ZP_06705564.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598636|gb|EFF42783.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 461 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 10/134 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R G++Q +L L ++ + + E+ + + Q + L Sbjct: 11 QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRPLTLAIQQRLKTALGD----- 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVRSIVSSE 130 + + D + +D G L ++ +V Q +++L R+ Sbjct: 66 --LDGLLDLDDPAALVEPLDESLRSLGHTLLPAELRALTGNLPQVAQALLDLHRAHQHLL 123 Query: 131 KKYRTIEEECMVEQ 144 ++ +E + VE Sbjct: 124 ERNAALELQIGVEH 137 >gi|255531894|ref|YP_003092266.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255344878|gb|ACU04204.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 107 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 33/79 (41%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 DIN+ +++R R G +Q + L I+ K E + RL+ ++ +L+ + Sbjct: 6 DINISQKLRALRKNRGWTQSDMAAQLDISVPAYSKIECAQTELTLGRLKLLATILKVKVC 65 Query: 72 FFFDVSPTVCSDISSEENN 90 + D + + E Sbjct: 66 WLLDEEEAMLHQENEELKE 84 >gi|237746706|ref|ZP_04577186.1| predicted protein [Oxalobacter formigenes HOxBLS] gi|229378057|gb|EEO28148.1| predicted protein [Oxalobacter formigenes HOxBLS] Length = 99 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 2/80 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP--I 70 +++G I+ R+ G+SQ KL E + + E + S LQ I L P I Sbjct: 1 MDIGNAIKTCRIRRGLSQTKLAELSECSVSYLSLIEHNQRDITVSTLQRICHALHVPMGI 60 Query: 71 SFFFDVSPTVCSDISSEENN 90 F S +IS E Sbjct: 61 LLFLGSSQDEFGNISKELEA 80 >gi|167772763|ref|ZP_02444816.1| hypothetical protein ANACOL_04145 [Anaerotruncus colihominis DSM 17241] gi|167665241|gb|EDS09371.1| hypothetical protein ANACOL_04145 [Anaerotruncus colihominis DSM 17241] Length = 149 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G+SQ++L E + +T Q V ++E G L+ +S++ + I+ Sbjct: 7 LLKLRTTNGLSQDQLAEKVHVTRQAVSRWETGETVPNTETLKLLSKLFDVSINTLL 62 >gi|163757965|ref|ZP_02165053.1| transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] gi|162284254|gb|EDQ34537.1| transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] Length = 231 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 28/59 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G +++ R+ G++Q + E +G +++ E+G + ++ +E + + Sbjct: 165 KEIGAKLKAARLEAGVTQAVVAEAMGTKENAIRRLERGEHSPSIDTIRKYAEAIGYDVG 223 >gi|149921925|ref|ZP_01910368.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149817187|gb|EDM76665.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 111 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 35/98 (35%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK +R R G+SQE L G++ +++ E G + L ++ L +S Sbjct: 13 GKHLRRLRKTRGLSQEALATRGGLSNDTIRRLEHGTFSPSLNTLVGLATGLGLRLSTILA 72 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + E +++ + L + + Sbjct: 73 SYEIGMLPVERELADLLVGRDKEEIQTLLKVARILLSE 110 >gi|107100810|ref|ZP_01364728.1| hypothetical protein PaerPA_01001838 [Pseudomonas aeruginosa PACS2] gi|296390262|ref|ZP_06879737.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 185 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 5/105 (4%) Query: 7 IPNP-----VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +PNP V +V +R R+ G+SQE L ++ + + E G V S L Sbjct: 1 MPNPTERPSVLEHVSGNVRRLRLQAGLSQEALARAASVSRRMLVGIESGDVNVSLSTLDR 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 I+ L T S I++ S L Sbjct: 61 IAAALGVLFPDLVQAPATDRSRINAVAWVGHHPESRATLLASAPA 105 >gi|42779585|ref|NP_976832.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47567216|ref|ZP_00237930.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|42735501|gb|AAS39440.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|47556059|gb|EAL14396.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 83 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 22 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|332976056|gb|EGK12926.1| DNA-binding protein [Desmospora sp. 8437] Length = 179 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 19/123 (15%), Positives = 46/123 (37%), Gaps = 8/123 (6%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R G + + L E ++ + + E+G + + + L+ I++ PI FF Sbjct: 8 IRRLRQSRGYTLKDLSERTELSVSFLSQVERGTSSLAITSLKKIADAFGVPIRQFFLAEN 67 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK--YRTI 136 + EE + + +++ +++ ++ ++ K+ Sbjct: 68 NFNYMLKKEEQKPFRLEGSSA------LYTRLNGEFDGRRLEPMMVTLAPKMKQNPDSHP 121 Query: 137 EEE 139 EE Sbjct: 122 GEE 124 >gi|333028514|ref|ZP_08456578.1| putative transcriptional regulatory protein [Streptomyces sp. Tu6071] gi|332748366|gb|EGJ78807.1| putative transcriptional regulatory protein [Streptomyces sp. Tu6071] Length = 212 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 28/76 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + +R R G + + L G++ + + E+ + +++ L I Sbjct: 30 LARNVRHWRTERGHTLDALAARAGVSRGMIVQIEQARTNPSLGTVVKVADALGVSIPTLL 89 Query: 75 DVSPTVCSDISSEENN 90 D P I EE+ Sbjct: 90 DQVPGPRVRIVPEEDA 105 >gi|320539287|ref|ZP_08038957.1| hypothetical protein SSYM_1010 [Serratia symbiotica str. Tucson] gi|320030679|gb|EFW12688.1| hypothetical protein SSYM_1010 [Serratia symbiotica str. Tucson] Length = 91 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 4/80 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R+ G+SQE+LG GI + +YE+G++ ++ VL P + Sbjct: 4 HRLKAARLKAGLSQERLGILAGIDEATASARMNQYERGIHTPDFELASRLASVLHVPACY 63 Query: 73 FFDVSPTVCSDISSEENNVM 92 F+ V + I ++ Sbjct: 64 FYAVEDDLAETILGYSDSQE 83 >gi|297158226|gb|ADI07938.1| regulatory protein [Streptomyces bingchenggensis BCW-1] Length = 484 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 2/104 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+ R G++Q +L E T V E G R + L+H++ L Sbjct: 17 EIGRRVLRLRTERGLTQRQLAE-PAYTAAYVSTLESGKVRPSEAALRHLAARLGVSYEEL 75 Query: 74 FDV-SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 P + + + ++T D F ++ R Sbjct: 76 TTGRDPHDAVRLRAGLTDARKTLATGDAKDAAALFEELMAQAER 119 >gi|302517812|ref|ZP_07270154.1| transcriptional regulatory protein [Streptomyces sp. SPB78] gi|318061036|ref|ZP_07979757.1| transcriptional regulatory protein [Streptomyces sp. SA3_actG] gi|302426707|gb|EFK98522.1| transcriptional regulatory protein [Streptomyces sp. SPB78] Length = 193 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 28/76 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + +R R G + + L G++ + + E+ + +++ L I Sbjct: 11 LARNVRHWRTERGHTLDALAARAGVSRGMIVQIEQARTNPSLGTVVKVADALGVSIPTLL 70 Query: 75 DVSPTVCSDISSEENN 90 D P I EE+ Sbjct: 71 DQVPGPRVRIVPEEDA 86 >gi|228935113|ref|ZP_04097940.1| hypothetical protein bthur0009_35660 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824478|gb|EEM70283.1| hypothetical protein bthur0009_35660 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 145 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 1/101 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I R +SQ L + LG + ++ YE+G L+ I++ E + Sbjct: 1 MLGKKIAELRKNQKLSQYDLADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +S+ + + L + Q+ + + Sbjct: 61 L-GRTEKKELLSNVTPGLSEKEERDIAKDLEKTLEQLKNSE 100 >gi|227877589|ref|ZP_03995644.1| XRE family transcriptional regulator [Lactobacillus crispatus JV-V01] gi|227862813|gb|EEJ70277.1| XRE family transcriptional regulator [Lactobacillus crispatus JV-V01] Length = 276 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 49/126 (38%), Gaps = 12/126 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++G+ ++ R LG++QE+ + + I+ K E+G N + A L I Sbjct: 6 MSKSIGEVLKEERRSLGLTQEQFIKGI-ISESFYSKVERGKNEIVAVDLLKILAANNISE 64 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F ++ E+ +QL + I D K + +++ +++ E Sbjct: 65 EEFLSKLNVKENNNLEEDLK----------VQLLNAY-SIHDKKKIRMLVQKIQNAAMDE 113 Query: 131 KKYRTI 136 + Sbjct: 114 NTKISA 119 >gi|225420221|ref|ZP_03762524.1| hypothetical protein CLOSTASPAR_06564 [Clostridium asparagiforme DSM 15981] gi|225041142|gb|EEG51388.1| hypothetical protein CLOSTASPAR_06564 [Clostridium asparagiforme DSM 15981] Length = 120 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 6/102 (5%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP+D RIR S +L + GI + + N LQ + + Sbjct: 18 NPLD-----RIRELCEQRKWSYYQLSKASGIPYSTLNTMLNKENMPSLPTLQKLCQGFGI 72 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFIS-TPDGLQLNRYFIQ 109 I FF+ + + + F S + + QL +++ Sbjct: 73 SIVEFFEPDRNLQGLTKDQALCLSLFTSLSQEEQQLALAYLK 114 >gi|160940853|ref|ZP_02088194.1| hypothetical protein CLOBOL_05746 [Clostridium bolteae ATCC BAA-613] gi|158436227|gb|EDP13994.1| hypothetical protein CLOBOL_05746 [Clostridium bolteae ATCC BAA-613] Length = 113 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 12/104 (11%), Positives = 35/104 (33%), Gaps = 1/104 (0%) Query: 1 MVGNKKIPNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+ + +D +G R++ R +SQ ++ L ++ + YE + + Sbjct: 5 MIKTMERGTVMDAYDLGLRLKGLREKYKLSQTQVATRLNLSRSAIANYESNTSFPSTDVV 64 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 + + + + + + + D + + L Sbjct: 65 TKFALLYHTSTDYILGLENRTTITLDGLTPSQEDDLLKVIDIFL 108 >gi|147677133|ref|YP_001211348.1| hypothetical protein PTH_0798 [Pelotomaculum thermopropionicum SI] gi|146273230|dbj|BAF58979.1| Uncharacterized protein conserved in bacteria [Pelotomaculum thermopropionicum SI] Length = 114 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 4/106 (3%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + GK +R R + G++ +++ L IT + E+G L I++ LE Sbjct: 5 DDILKVFGKNVRQYRKMKGLTLKQMSRGLNITGAYLGYLERGQRNPSLLALAEIAKTLEV 64 Query: 69 PISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 D + + N + + ++ + ++ + Sbjct: 65 QPYLLLIPSRDEFEEELIVLVNMLNEMGEIKHVIFLKEVLKVYLNL 110 >gi|329120606|ref|ZP_08249269.1| XRE family transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] gi|327460830|gb|EGF07164.1| XRE family transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] Length = 69 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R +SQ+ L + + ++ Q V E S +++VL++ ++ F Sbjct: 2 NRVRQFRKQKQLSQQALADLVEVSRQTVNMIENQDYNPTLSLCIRLAKVLDTDLNALFWE 61 Query: 77 SPTV 80 Sbjct: 62 EEDE 65 >gi|325283943|ref|YP_004256484.1| transcriptional regulator, XRE family [Deinococcus proteolyticus MRP] gi|324315752|gb|ADY26867.1| transcriptional regulator, XRE family [Deinococcus proteolyticus MRP] Length = 90 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ + R G+S++ L + + +Q + E+G +SE PI F Sbjct: 16 NRLPVLRAERGLSRQDLAAAIAVNYQTIGYLERGEYAPSLDLAFRLSEFFGLPIEAIFSR 75 Query: 77 SP 78 +P Sbjct: 76 TP 77 >gi|322386654|ref|ZP_08060279.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269327|gb|EFX52262.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 169 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 9/114 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + F Sbjct: 9 GPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLFG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-----DVKVRQKIIELVR 124 S + + S E+N + ++ + I+ D + + ++ L R Sbjct: 69 TSKEIELEKSVLESNEY----SDKVSEILKAVKYIEHFLHTDGQYLEDLLYLTR 118 >gi|313898339|ref|ZP_07831876.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956721|gb|EFR38352.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 401 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++I R G +Q +L E L ++ + V ++E + L+ +SE L Sbjct: 8 EKIIRLRKKKGYTQAQLAELLNVSNKAVSRWETAEGYPDITLLKPLSEALGISCDELLGD 67 Query: 77 SP 78 + Sbjct: 68 TK 69 >gi|312867912|ref|ZP_07728116.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096316|gb|EFQ54556.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 170 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R+ G+SQ +L E LGI Q + YEK + + L I+E + + F Sbjct: 9 GPNLARLRIEKGVSQTQLAEDLGIGKQSISDYEKQKSYPTFANLDKIAEYFNATPTQLFG 68 Query: 76 VSPT-VCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIELVR 124 S E N D +S ++ +F++ D + + ++ L R Sbjct: 69 TSKEIELEKSVLESNEYSDKVSEILKAVKYIEHFLE-TDGQYLEDLLYLTR 118 >gi|237717599|ref|ZP_04548080.1| helix-turn-helix domain-containing protein [Bacteroides sp. 2_2_4] gi|229453103|gb|EEO58894.1| helix-turn-helix domain-containing protein [Bacteroides sp. 2_2_4] Length = 358 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 KR++ R++ G S + L E +G I+ Q V KYE G +S L I+ L +FF Sbjct: 9 KRLKSARIMAGWSMDMLCEKIGNLISKQSVSKYENGKMMPDSSVLIAIANALNLDPDYFF 68 >gi|228477794|ref|ZP_04062422.1| conserved domain protein [Streptococcus salivarius SK126] gi|228250486|gb|EEK09700.1| conserved domain protein [Streptococcus salivarius SK126] Length = 66 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R+ ++Q+ L + +G++ Q + EKG + I + L+ + F S Sbjct: 5 KMKSARVAKDLTQQGLADAIGVSRQTISAIEKGDYNPTINLCIAICKTLDKTLDQLFWES 64 Query: 78 PT 79 Sbjct: 65 ED 66 >gi|227544810|ref|ZP_03974859.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300908944|ref|ZP_07126407.1| cro/CI family transcriptional regulator [Lactobacillus reuteri SD2112] gi|227185211|gb|EEI65282.1| transcriptional regulator [Lactobacillus reuteri CF48-3A] gi|300894351|gb|EFK87709.1| cro/CI family transcriptional regulator [Lactobacillus reuteri SD2112] Length = 108 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFF 73 +G IR RR LG++QE+L G++ + + E G N V A L I+EVL++ + Sbjct: 4 LGANIRARRHELGITQEQLSNNTGLSINYISRLEVGTANNVSAKTLLKIAEVLKTSMDKL 63 Query: 74 FDVSPTVCS 82 + S + Sbjct: 64 VNGSSDTAN 72 >gi|220928392|ref|YP_002505301.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219998720|gb|ACL75321.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 133 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 8/128 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R + SQ+++ + LG + + + KYE G + S+ + + Sbjct: 6 ERIKSLRNVKRQSQKEVAKALGKSREAISKYELGEREPDPDVIVQFSKHFNVSSDYMLGI 65 Query: 77 SP-------TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV-RQKIIELVRSIVS 128 + + SSE ++ D + ++I D + + +L+ ++ Sbjct: 66 TDHIENIPSSERKPYSSELYAFEKYLKNQDFIPYLELAVRIKDSNIEINQFEKLLNKLIK 125 Query: 129 SEKKYRTI 136 EKK + Sbjct: 126 QEKKQKHT 133 >gi|78186562|ref|YP_374605.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166464|gb|ABB23562.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 101 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 29/62 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +IR+ R++ +QEKL G++ + E+G + +++ L+ I Sbjct: 24 LGLKIRIARIMASYTQEKLAVRSGLSMAYIGMIERGEKNITILNCHKLAKALDITIGDLL 83 Query: 75 DV 76 D Sbjct: 84 DG 85 >gi|163942858|ref|YP_001647742.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865055|gb|ABY46114.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 65 Score = 42.5 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 8/59 (13%), Positives = 21/59 (35%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 7 IKELRKQNHITQVEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGMKVEEIFTLE 65 >gi|319757761|gb|ADV69703.1| transcriptional regulator [Streptococcus suis JS14] Length = 158 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 32/95 (33%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 1 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + ++ I L++ + Sbjct: 61 VGEDKMLTPVEDYHLTLKVEVIKERGAAILSKLYR 95 >gi|312868344|ref|ZP_07728544.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311096089|gb|EFQ54333.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 64 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R+ M+Q L + +G+T Q + E G S I + L+ + F Sbjct: 6 KLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCLAICKTLDKTLDQLF 62 >gi|284053790|ref|ZP_06384000.1| hypothetical protein AplaP_20232 [Arthrospira platensis str. Paraca] gi|291570058|dbj|BAI92330.1| type I restriction-modification system S subunit [Arthrospira platensis NIES-39] Length = 82 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G IR R +G+SQE+LG + + E+GV + + ++E L +S Sbjct: 10 KALGFLIRQHRRAVGISQEELGLRCDLDRTYISGLERGVRNPSLTAIVALAEGLGITVSQ 69 Query: 73 FFDVSP 78 D Sbjct: 70 LLDNLE 75 >gi|257868206|ref|ZP_05647859.1| predicted protein [Enterococcus casseliflavus EC30] gi|257874521|ref|ZP_05654174.1| predicted protein [Enterococcus casseliflavus EC10] gi|257802320|gb|EEV31192.1| predicted protein [Enterococcus casseliflavus EC30] gi|257808685|gb|EEV37507.1| predicted protein [Enterococcus casseliflavus EC10] Length = 166 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 41/108 (37%), Gaps = 6/108 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF--- 74 +++ R ++Q L E L ++ + + K+E G + I+E L+ + Sbjct: 12 KLKEYREKNKLTQSMLAELLEVSDKTISKWELGATYPSKKNMIKIAEELDISLETLLLEE 71 Query: 75 ---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 D S + + F T N+ F I ++ +++K Sbjct: 72 TKKDNEDLKVSIKYGVISFCLIFFVTMIITSFNQDFSTIMNLSIQEKF 119 >gi|254975128|ref|ZP_05271600.1| hypothetical protein CdifQC_07430 [Clostridium difficile QCD-66c26] gi|255314255|ref|ZP_05355838.1| hypothetical protein CdifQCD-7_07890 [Clostridium difficile QCD-76w55] gi|255516934|ref|ZP_05384610.1| hypothetical protein CdifQCD-_07459 [Clostridium difficile QCD-97b34] gi|255650037|ref|ZP_05396939.1| hypothetical protein CdifQCD_07609 [Clostridium difficile QCD-37x79] Length = 182 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 43/115 (37%), Gaps = 13/115 (11%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++Q +L + L + ++ E L ISE + + Sbjct: 81 RLKELRKKKELTQAELSKLLNCSLSKIAMLETSKREPVKEDLLRISEFFNVSVDYLLG-- 138 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + ++ ++I+T + ++ + + + ++ I + +V KK Sbjct: 139 ----------KTSIENYITTDEISKIIKSYESLPKEA-QEHINSYIEFLVDRYKK 182 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 45/124 (36%), Gaps = 4/124 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G+S +KL L I + + E G+ S ++ S+ + Sbjct: 4 LKKLRTEKGISLDKLSTDLNINKSTLSRIENGLREPKESFIKDCSDYFGVSTDYLIGKIN 63 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIEE 138 S+ ++ N I L+ R ++ ++ + + + I E R + Sbjct: 64 IDDSNKLTKCLNSTFPI----RLKELRKKKELTQAELSKLLNCSLSKIAMLETSKREPVK 119 Query: 139 ECMV 142 E ++ Sbjct: 120 EDLL 123 >gi|261856219|ref|YP_003263502.1| XRE family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261836688|gb|ACX96455.1| transcriptional regulator, XRE family [Halothiobacillus neapolitanus c2] Length = 135 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 40/108 (37%), Gaps = 15/108 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G R++ R L +SQ ++ + LG++ + V +EKG A + + + + + Sbjct: 5 LQIGARLKEERTRLRLSQSEIADSLGVSRRSVIDWEKGGATPNAENISDLYD-FGVDVLY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + E+ L + D R +I+ Sbjct: 64 TLTGRREPEPFSTEEK--------------LLVERYRAADEATRYRIL 97 >gi|167033734|ref|YP_001668965.1| XRE family transcriptional regulator [Pseudomonas putida GB-1] gi|166860222|gb|ABY98629.1| transcriptional regulator, XRE family [Pseudomonas putida GB-1] Length = 180 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R LGM+ E L E G+T + K E+G+N + ++ L + F Sbjct: 4 RLKLLRKKLGMTLEMLAEKTGMTKSYLSKVERGLNTPSIAAALKLARALNVNVEELFAEE 63 Query: 78 PTVCS 82 S Sbjct: 64 QAGQS 68 >gi|187922165|ref|YP_001893807.1| XRE family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187713359|gb|ACD14583.1| transcriptional regulator, XRE family [Burkholderia phytofirmans PsJN] Length = 109 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R G++QE+LG GI +V +YEKG + Q ++ L P F Sbjct: 14 RRLKQARQRSGLTQEQLGIQAGIDEFSASTRVNQYEKGKHTPAIQTSQRLARALLVPTGF 73 Query: 73 FFDVSP 78 ++ Sbjct: 74 LYEDDD 79 >gi|186476299|ref|YP_001857769.1| anaerobic benzoate catabolism transcriptional regulator [Burkholderia phymatum STM815] gi|184192758|gb|ACC70723.1| transcriptional regulator, XRE family with shikimate kinase activity [Burkholderia phymatum STM815] Length = 317 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 3/118 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P +G+R+RL R GM+++ L G++ + + E GV L+ I+ L Sbjct: 28 DPFLTAMGERVRLLRARRGMTRKTLASETGLSERHLANLESGVGNASVLVLRQIAATLNC 87 Query: 69 PISFFFDVSPTVCSD---ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 P++ T ++ I + + L+ F Q R+ I L+ Sbjct: 88 PLAEVIGDETTSSAEWLLIRELLHGRDQAALQRARVALSEMFAQAPRDPHRKDRIALI 145 >gi|221133625|ref|ZP_03559930.1| transcriptional regulator, XRE family protein [Glaciecola sp. HTCC2999] Length = 521 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 7/79 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVLE 67 +G ++R R ++ + L + E+G L I++V + Sbjct: 19 LGTKVRNLRKRNNLTLDDLSSRCIRFDANNAPSVSYLSMIERGKRVPSWDMLDVIAQVFQ 78 Query: 68 SPISFFFDVSPTVCSDISS 86 S+F D P I Sbjct: 79 KEPSWFLDDEPEQDDIIID 97 >gi|91225344|ref|ZP_01260512.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] gi|91189983|gb|EAS76255.1| putative transcriptional regulator [Vibrio alginolyticus 12G01] Length = 102 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 9/102 (8%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLE 67 D + R++ R ++Q+ LG +G+ + YEKG + L+ ++E L+ Sbjct: 4 DNPIPARLKAARKKAKITQKDLGVKIGMEPSSASGRMNHYEKGRHVPDIGTLERMAEELD 63 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 P+++FF +++S+E +D +S + L + Sbjct: 64 VPLNYFF-----CRNELSAELACAIDKMSDEEKAALLKSLES 100 >gi|52079187|ref|YP_077978.1| putative HTH-type transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52784554|ref|YP_090383.1| hypothetical protein BLi00755 [Bacillus licheniformis ATCC 14580] gi|319647032|ref|ZP_08001258.1| hypothetical protein HMPREF1012_02296 [Bacillus sp. BT1B_CT2] gi|52002398|gb|AAU22340.1| Putative HTH-type transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52347056|gb|AAU39690.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317390856|gb|EFV71657.1| hypothetical protein HMPREF1012_02296 [Bacillus sp. BT1B_CT2] Length = 69 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ +R L M+QE+L + L ++ Q V EKG + ++++ E I F Sbjct: 5 IKEKRTSLNMTQEELAKRLNVSRQTVISLEKGKYKPSLVLAHKLAQIFECLIEDLFIFEG 64 Query: 79 TVCSD 83 D Sbjct: 65 DENID 69 >gi|323141018|ref|ZP_08075925.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322414507|gb|EFY05319.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 120 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 41/113 (36%), Gaps = 7/113 (6%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 NP +G I+ R +SQ+ L + + I+ + E G V + IS+ L+ Sbjct: 7 NPDYKLIGNNIKQMRTKSQVSQQSLAKAINISQTHMSNLENGKTGVSLAIAIRISQHLKC 66 Query: 69 PISFFFDVS-----PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + + P +S + + + ++ F + +V+ Sbjct: 67 SLDELIFGTNKKSYPAASKPLSDHTVDEFNQLLKRSLAEMM--FQCLQHPEVQ 117 >gi|291535512|emb|CBL08624.1| Helix-turn-helix [Roseburia intestinalis M50/1] Length = 119 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 33/85 (38%), Gaps = 1/85 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FF 73 +G+ I+ R GM++E+L + + +Q E + L + + + + Sbjct: 15 IGQAIKKARTAKGMTREQLARIVDYDPRHLQAIENEGQKPSLELLIQLVTMFGVSVDEYI 74 Query: 74 FDVSPTVCSDISSEENNVMDFISTP 98 F + S + + +D ++ Sbjct: 75 FPDNEVKRSSVRRRLDAELDKLNDK 99 >gi|289773956|ref|ZP_06533334.1| transcriptional regulator [Streptomyces lividans TK24] gi|289704155|gb|EFD71584.1| transcriptional regulator [Streptomyces lividans TK24] Length = 200 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 34/82 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V KRIR R+ G S E+L ++ + + E G R+ +L ++ L++ Sbjct: 10 DLDSLVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARALDTT 69 Query: 70 ISFFFDVSPTVCSDISSEENNV 91 + + + ++ Sbjct: 70 LDQLVETADEDVITSPMIDSAH 91 >gi|289175228|emb|CBJ82031.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004] Length = 401 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 28/57 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+ R G+S+ LG+ + + V K+E G + A L +S VL P+ +F Sbjct: 11 ARLTQMREARGLSKISLGKLVERSPSTVTKWENGNHSPDAEILHSLSRVLNCPVGWF 67 >gi|229169877|ref|ZP_04297573.1| hypothetical protein bcere0007_48170 [Bacillus cereus AH621] gi|228613591|gb|EEK70720.1| hypothetical protein bcere0007_48170 [Bacillus cereus AH621] Length = 65 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 5 NKIKELRKQHHITQIEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGMKVEEIFTL 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|148380241|ref|YP_001254782.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|148289725|emb|CAL83830.1| putative DNA-binding protein [Clostridium botulinum A str. ATCC 3502] Length = 79 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS--FFF 74 +++ R LG++QE+LGE +G++ Q + E I++V I F F Sbjct: 4 NKLKQFRENLGLTQEQLGELVGVSRQAINAIETEKFEPSIWLAYDIAKVFHDTIEEVFLF 63 Query: 75 DVSPTVCSDISS 86 + S S Sbjct: 64 EESERKSRSEKS 75 >gi|325956268|ref|YP_004286878.1| DNA-binding membrane protein [Lactobacillus acidophilus 30SC] gi|325332833|gb|ADZ06741.1| DNA-binding membrane protein [Lactobacillus acidophilus 30SC] Length = 109 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 24/63 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R +SQ + + L +T Q V ++ N + L I+ V + Sbjct: 6 QIKQLRKENNLSQVQYAKKLYVTRQAVSNWKNNRNLLDLEMLIEINRVCHISLDQLILGD 65 Query: 78 PTV 80 + Sbjct: 66 DNM 68 >gi|326403693|ref|YP_004283775.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] gi|325050555|dbj|BAJ80893.1| Xre family transcriptional regulator [Acidiphilium multivorum AIU301] Length = 469 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R R G++Q+KL LGI+ + E V A+ L ++E L+ ++ Sbjct: 6 IGRIVRRLRQEHGLTQQKLASRLGISTSYLNLIEHDQRGVTAALLIKLTETLKVDLAALS 65 Query: 75 DVSPTVCSDISSEE 88 E Sbjct: 66 GSDERQVEQALREA 79 >gi|315128231|gb|EFT84267.1| phage repressor protein, putative [Staphylococcus aureus subsp. aureus CGS03] Length = 243 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 39/108 (36%), Gaps = 8/108 (7%) Query: 15 VGKRIRLRRMILGMSQEKLG--------ECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +G+ ++ R M+ E+L + + +T ++ K+E S + ++E Sbjct: 3 IGEGLKKLRKNKNMTMEQLATDLNNKYPDLMKLTKGKISKWENEKEEPRLSTAKILAEYF 62 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 I+ + S T D + + LN Q+++ Sbjct: 63 NVKINDLYSESNTTYKDDNDITSIYNKLTPPRQENVLNYANEQLEEQN 110 >gi|212696965|ref|ZP_03305093.1| hypothetical protein ANHYDRO_01528 [Anaerococcus hydrogenalis DSM 7454] gi|212676053|gb|EEB35660.1| hypothetical protein ANHYDRO_01528 [Anaerococcus hydrogenalis DSM 7454] Length = 212 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K+ + +D +GK I+ R+ +S +KL E + ++ + + E G + L+ IS+ Sbjct: 22 KEKGDQMDK-LGKNIKNSRISQNLSLKKLAEKVDVSPSMLSQIESGKANPSLNTLKLISQ 80 Query: 65 VLESPISFFFDVSP 78 L+ P+ F Sbjct: 81 HLKVPMFTLFIEED 94 >gi|199597846|ref|ZP_03211272.1| transcriptional regulator, PbsX family protein [Lactobacillus rhamnosus HN001] gi|258509577|ref|YP_003172328.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|199591282|gb|EDY99362.1| transcriptional regulator, PbsX family protein [Lactobacillus rhamnosus HN001] gi|257149504|emb|CAR88477.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|259650844|dbj|BAI43006.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 70 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 22/66 (33%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R ++Q+ L + L ++ Q V E G +S V PI F Sbjct: 3 NRIEALRNQHHLTQQDLADRLEVSRQTVSSLENGRYNPSLGLAFKLSHVFNLPIERIFID 62 Query: 77 SPTVCS 82 Sbjct: 63 ESADSK 68 >gi|42518546|ref|NP_964476.1| hypothetical protein LJ0451 [Lactobacillus johnsonii NCC 533] gi|41582831|gb|AAS08442.1| hypothetical protein LJ_0451 [Lactobacillus johnsonii NCC 533] Length = 272 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 42/107 (39%), Gaps = 12/107 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R LG++QE++ + + I+ K E+G+ + L I IS Sbjct: 1 MKIGQALKEERQKLGLTQEQMIKGI-ISKGHYSKIERGLESISIDTLFRIILKHHIDISD 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 FF+ + +L + + + R+K+ Sbjct: 60 FFN-----------KVKYDYYTSEDKKAEELKQKMLHAFNNNQREKV 95 >gi|28210370|ref|NP_781314.1| transcriptional regulatory protein [Clostridium tetani E88] gi|28202807|gb|AAO35251.1| transcriptional regulatory protein [Clostridium tetani E88] Length = 343 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 2/94 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R ++QE++ L I+ V K+E G++ + L ++ VL+ ++ + Sbjct: 7 IRNYRKKENLTQEQVANYLNISAPAVNKWENGISYPDITLLAPLARVLKIDVNTLLAFNE 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + + + I + DG + + F + D Sbjct: 67 ELTDAEVNNFTKEISEIISKDGYE--KAFKKGSD 98 >gi|37525095|ref|NP_928439.1| hypothetical protein plu1127 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37525319|ref|NP_928663.1| hypothetical protein plu1363 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527554|ref|NP_930898.1| hypothetical protein plu3690 [Photorhabdus luminescens subsp. laumondii TTO1] gi|37527562|ref|NP_930906.1| hypothetical protein plu3698 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784521|emb|CAE13421.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36784746|emb|CAE13656.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786989|emb|CAE16063.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786997|emb|CAE16071.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 112 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 15/117 (12%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R LG +Q+++ + +G+ Q ++YE G ++ + I+ L Sbjct: 6 KLAASRKELGFTQQQMADKIGMHVSQYKRYEAGTSQPTIDVFRRIALALNVSADMLLFDP 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 D L+L + D K R+ I ++ S++ R Sbjct: 66 NERGPDD---------------RLKLQFEAVSQLDEKEREAIETVISSMLHMHDAKR 107 >gi|47565459|ref|ZP_00236500.1| transcriptional regulator, XRE family [Bacillus cereus G9241] gi|47557449|gb|EAL15776.1| transcriptional regulator, XRE family [Bacillus cereus G9241] Length = 404 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTAL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 75 DVSP 78 + Sbjct: 63 EEDD 66 >gi|328956456|ref|YP_004373842.1| transcriptional regulator [Carnobacterium sp. 17-4] gi|328672780|gb|AEB28826.1| transcriptional regulator [Carnobacterium sp. 17-4] Length = 65 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +SQ++L + + +T Q + E+G + + I + L+ ++ F Sbjct: 6 RLKAARAKNDLSQQQLADAVNVTRQTISAIERGDYNPTINLCREICKKLDLTLNDLFWEE 65 >gi|326329678|ref|ZP_08195999.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] gi|325952443|gb|EGD44462.1| putative Helix-turn-helix domain protein [Nocardioidaceae bacterium Broad-1] Length = 185 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 11 VD--INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D VG RIR R G + E+L ++ + + E G + L ++ L Sbjct: 2 IDELKQVGPRIRAIRHSKGWTLEQLAAMAEMSPSTLSRLESGKRQASLELLIPLTRHLGV 61 Query: 69 PISFF 73 + Sbjct: 62 GLDSL 66 >gi|325569186|ref|ZP_08145391.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] gi|325157435|gb|EGC69595.1| XRE family transcriptional regulator [Enterococcus casseliflavus ATCC 12755] Length = 135 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 28/62 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R+ MSQE++ + + +T + +E G + L +S + + Sbjct: 1 MTIGEALKNHRVTQQMSQEEVAKKILVTRTSISNWETGKTVPDSLNLLKLSTLYGCSVDE 60 Query: 73 FF 74 Sbjct: 61 LL 62 >gi|322833805|ref|YP_004213832.1| helix-turn-helix domain protein [Rahnella sp. Y9602] gi|321169006|gb|ADW74705.1| helix-turn-helix domain protein [Rahnella sp. Y9602] Length = 87 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQ----KYEKGVNRVGASRLQHISEVLESP 69 + R++ R ++QEKLG GI + +YE G + H + VL P Sbjct: 1 MIPHRLKSARTKARLTQEKLGVLAGIDESTARSRVSQYENGTYSPNFDTMCHFARVLNVP 60 Query: 70 ISFFFDVSPTVCSDIS 85 +F+ + ++ Sbjct: 61 ECYFYIIDDAFAEEVL 76 >gi|312952946|ref|ZP_07771802.1| helix-turn-helix protein [Enterococcus faecalis TX0102] gi|310629087|gb|EFQ12370.1| helix-turn-helix protein [Enterococcus faecalis TX0102] Length = 202 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 28/67 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKRI+ R + E+ G+ +G T V +E G L+ I+ + ++ + + Sbjct: 15 AIGKRIKAIRENFDCTMEQFGQLIGTTKVAVYNWETGKRFPSDDSLEWIALLGKTTVEWI 74 Query: 74 FDVSPTV 80 Sbjct: 75 VYGDIEE 81 >gi|291544080|emb|CBL17189.1| hypothetical protein RUM_10270 [Ruminococcus sp. 18P13] Length = 176 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLES 68 + +G+RIR R + GM+Q+ LG +G + + +YE G A ++ VL+ Sbjct: 1 MAIGERIRFIRNLKGMTQKWLGIAVGFPEKTADIRMAQYESGSRTPKAVLTGALANVLDV 60 Query: 69 PI 70 Sbjct: 61 SP 62 >gi|160934847|ref|ZP_02082233.1| hypothetical protein CLOLEP_03722 [Clostridium leptum DSM 753] gi|156866300|gb|EDO59672.1| hypothetical protein CLOLEP_03722 [Clostridium leptum DSM 753] Length = 96 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 9/82 (10%), Positives = 25/82 (30%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R ++Q ++ L ++ + YE V L ++ + + Sbjct: 6 GYRLKNLRQQHHLTQTQVANRLNLSKTSISGYENNVKTPSQDVLIKLAGLYRVSTDYLLG 65 Query: 76 VSPTVCSDISSEENNVMDFIST 97 + + + Sbjct: 66 LDDEEMISVEGLTRQQRRLVEE 87 >gi|145294871|ref|YP_001137692.1| hypothetical protein cgR_0818 [Corynebacterium glutamicum R] gi|140844791|dbj|BAF53790.1| hypothetical protein [Corynebacterium glutamicum R] Length = 441 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 10/135 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R ++Q L + L ++ + + E + A+ L + +V + S+F Sbjct: 7 GARINALRRTHQLTQSALADKLDLSTSYLNQLENDGRPLTATVLLQLMKVFDVEASYFSP 66 Query: 76 VSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKII--------ELVRS 125 T + +E + +S D L F Q+ ++ + + VR Sbjct: 67 DRGTATATRLAETLAMNQGPTMSMDDLLDFADRFPQLAQHIIQPAEVDPTHSSAHDFVRD 126 Query: 126 IVSSEKKYRTIEEEC 140 ++ K Y + Sbjct: 127 YFATHKNYIDSLDRL 141 >gi|19551928|ref|NP_599930.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62389587|ref|YP_224989.1| MerR family transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|21323464|dbj|BAB98091.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] gi|41324922|emb|CAF19403.1| TRANSCRIPTIONAL REGULATOR, MERR FAMILY [Corynebacterium glutamicum ATCC 13032] Length = 441 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 24/135 (17%), Positives = 49/135 (36%), Gaps = 10/135 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI R ++Q L + L ++ + + E + A+ L + +V + S+F Sbjct: 7 GARINALRRTHQLTQSALADKLDLSTSYLNQLENDGRPLTATVLLQLMKVFDVEASYFSP 66 Query: 76 VSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKII--------ELVRS 125 T + +E + +S D L F Q+ ++ + + VR Sbjct: 67 DRGTATATRLAETLAMNQGPTMSMDDLLDFADRFPQLAQHIIQPAEVDPTHSSAHDFVRD 126 Query: 126 IVSSEKKYRTIEEEC 140 ++ K Y + Sbjct: 127 YFATHKNYIDSLDRL 141 >gi|326772833|ref|ZP_08232117.1| transcriptional regulator, XRE family [Actinomyces viscosus C505] gi|326637465|gb|EGE38367.1| transcriptional regulator, XRE family [Actinomyces viscosus C505] Length = 74 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 22/63 (34%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +++ R +Q +L E LG++ Q V E G I+ V I F Sbjct: 12 LKVLRAQRSWTQARLAEELGVSRQTVNALEAGRYDPSLPLAFTIARVFGLTIEEIFFPDD 71 Query: 79 TVC 81 Sbjct: 72 EAS 74 >gi|319442794|ref|ZP_07991950.1| hypothetical protein CvarD4_13644 [Corynebacterium variabile DSM 44702] Length = 99 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G IR+ R G++Q++L + + ++ + V + EKG + ++ L S Sbjct: 24 MSLGAVIRVLRRQKGLTQQQLADAVEVSKRSVVRVEKGEQSITMDTFGRYADALGMRPSD 83 Query: 73 FF 74 Sbjct: 84 LL 85 >gi|311105237|ref|YP_003978090.1| hypothetical protein AXYL_02046 [Achromobacter xylosoxidans A8] gi|310759926|gb|ADP15375.1| helix-turn-helix family protein 5 [Achromobacter xylosoxidans A8] Length = 245 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 34/94 (36%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + + + +++G IR RR LG + L +G V + E+G L I+ Sbjct: 20 TQSRADNLAMSLGDNIRQRRKALGWTILDLANRIGSDVGNVSRLERGKQGYSDEILAKIA 79 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 L P+ F + + + + + Sbjct: 80 AALGCPVGELFLGVEKESNVELTALGSRRIPVLS 113 >gi|309797052|ref|ZP_07691451.1| peptidase S24-like domain protein [Escherichia coli MS 145-7] gi|308119335|gb|EFO56597.1| peptidase S24-like domain protein [Escherichia coli MS 145-7] Length = 251 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWLSSG 87 Query: 77 SPTVCSDISS 86 + Sbjct: 88 VGNMSDSTVQ 97 >gi|293400397|ref|ZP_06644543.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306797|gb|EFE48040.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 66 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ G+ +R R ++QE+L + + E+GV V ++ I+ L Sbjct: 3 IEARFGRNVRSLRKQRHLTQEELAALCHVHQHYISDIERGVRNVSLRVVETIARALGVHE 62 Query: 71 SFFF 74 Sbjct: 63 KDLL 66 >gi|289550066|ref|YP_003470970.1| hypothetical protein SLGD_00695 [Staphylococcus lugdunensis HKU09-01] gi|315659305|ref|ZP_07912169.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] gi|289179598|gb|ADC86843.1| hypothetical protein SLGD_00695 [Staphylococcus lugdunensis HKU09-01] gi|315495730|gb|EFU84061.1| cro/CI family transcriptional regulator [Staphylococcus lugdunensis M23590] Length = 71 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 28/63 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R +SQ +L +G++ Q + E G +I++ L + + F Sbjct: 9 NKVKVYRGYSKISQLELARAVGVSRQTINMIENGKYNPSLKLCVNIAKTLGTTLDTLFWE 68 Query: 77 SPT 79 + T Sbjct: 69 NDT 71 >gi|229020269|ref|ZP_04177038.1| hypothetical protein bcere0030_47600 [Bacillus cereus AH1273] gi|229026493|ref|ZP_04182848.1| hypothetical protein bcere0029_47690 [Bacillus cereus AH1272] gi|228734801|gb|EEL85441.1| hypothetical protein bcere0029_47690 [Bacillus cereus AH1272] gi|228741022|gb|EEL91251.1| hypothetical protein bcere0030_47600 [Bacillus cereus AH1273] Length = 73 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 31/71 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R+R R +SQ +LG+ +G + Q + E+G I+++ +P+ Sbjct: 1 MKLQNRVREFRAKHRLSQGELGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFGAPVEE 60 Query: 73 FFDVSPTVCSD 83 F + D Sbjct: 61 IFMLVEGEDGD 71 >gi|300767755|ref|ZP_07077665.1| conserved hypothetical protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494740|gb|EFK29898.1| conserved hypothetical protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 250 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ RR G++Q +L L +T Q V K+E+G L +S++ + S Sbjct: 7 LKTRRCQYGLTQAQLASKLFVTTQAVSKWERGKAIPSIDNLLALSDLYNLSLDELVRGS 65 >gi|170023456|ref|YP_001719961.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169749990|gb|ACA67508.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis YPIII] Length = 209 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 1/69 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R L +SQ +L + ++ ++ YE +V +++ L Sbjct: 4 IGQRIKRFREELSISQAELAQRCGWLSQSRIGNYETDSRKVSVEDAVVLAKALNVNPGEL 63 Query: 74 FDVSPTVCS 82 +P S Sbjct: 64 ILGTPDNAS 72 >gi|159036046|ref|YP_001535299.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157914881|gb|ABV96308.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 191 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 40/115 (34%), Gaps = 11/115 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K +PN +G IR R +S +L E G++ + + E+G+ + A LQ Sbjct: 1 MATGKDLPN-----IGGFIRDLRRNAKISLRQLSEQAGVSNPYLSQIERGLRKPSAEVLQ 55 Query: 61 HISEVLESPI------SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++ L + D + + + Q+ F + Sbjct: 56 QLASALRVSTPAMYLRAGLLDDREGQGVLAAIAADPDLTMAQKQSLTQIYETFRR 110 >gi|28377772|ref|NP_784664.1| hypothetical protein lp_0949 [Lactobacillus plantarum WCFS1] gi|254555954|ref|YP_003062371.1| hypothetical protein JDM1_0787 [Lactobacillus plantarum JDM1] gi|308179946|ref|YP_003924074.1| hypothetical protein LPST_C0760 [Lactobacillus plantarum subsp. plantarum ST-III] gi|28270605|emb|CAD63511.1| unknown [Lactobacillus plantarum WCFS1] gi|254044881|gb|ACT61674.1| conserved hypothetical protein [Lactobacillus plantarum JDM1] gi|308045437|gb|ADN97980.1| hypothetical protein LPST_C0760 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 250 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 27/59 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ RR G++Q +L L +T Q V K+E+G L +S++ + S Sbjct: 7 LKTRRCQYGLTQAQLASKLFVTTQAVSKWERGKAIPSIDNLLALSDLYNLSLDELVRGS 65 >gi|21283165|ref|NP_646253.1| phage repressor [Staphylococcus aureus subsp. aureus MW2] gi|300911879|ref|ZP_07129322.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|21204605|dbj|BAB95301.1| phage repressor [Staphylococcus aureus subsp. aureus MW2] gi|300886125|gb|EFK81327.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] Length = 107 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 12/101 (11%), Positives = 38/101 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++ +G+ + +YE G ++ + I+ L+ + Sbjct: 6 EIGKLIKQLRKENNVNLTDFAIKIGVNKSTLSRYENGSRKIPMEDIAEIANALKVTPEYL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + +++ ++ ++ + ++ Y I + Sbjct: 66 LLKNRQPENEVQHRAAHLEGELTDDEWQRVLDYADYIRSKR 106 >gi|75762636|ref|ZP_00742481.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218895748|ref|YP_002444159.1| DNA-binding protein [Bacillus cereus G9842] gi|228899378|ref|ZP_04063640.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222] gi|228963794|ref|ZP_04124935.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|74489883|gb|EAO53254.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542527|gb|ACK94921.1| DNA-binding protein [Bacillus cereus G9842] gi|228795939|gb|EEM43406.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228860284|gb|EEN04682.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222] Length = 66 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I++ R+ L ++Q++L E +G+T Q + EKG I ++ ++ F Sbjct: 4 SKIKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNELFWE 63 Query: 77 SPT 79 Sbjct: 64 EKE 66 >gi|329847855|ref|ZP_08262883.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328842918|gb|EGF92487.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 63 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R SQ L + L ++ Q V E G ++ + E I F Sbjct: 3 NRLKVLRAERNWSQADLADRLKVSRQTVNAIETGKYDPSLPLAFQLARLFEMRIEDIFTP 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|322412332|gb|EFY03240.1| hypothetical protein SDD27957_08155 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 67 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 25/62 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R ++Q ++ L + + E G + S L+ ++ + + ++ Sbjct: 4 RLRNLREDKDLTQSQIASYLHCSQSVYSRIENGKQDIPTSFLKKLAIYYKVTTDYILEMD 63 Query: 78 PT 79 + Sbjct: 64 KS 65 >gi|317501285|ref|ZP_07959488.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] gi|316897249|gb|EFV19317.1| xre family Toxin-antitoxin system [Lachnospiraceae bacterium 8_1_57FAA] Length = 209 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 47/112 (41%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ ++ + Q + +D + ++ +++ Sbjct: 70 KGETDEYETDITDKKELQIRDAMGDILKQFPLDLNKTEDAFSKDLLLLMLKQ 121 >gi|309774592|ref|ZP_07669617.1| helix-turn-helix domain-containing protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917623|gb|EFP63338.1| helix-turn-helix domain-containing protein [Erysipelotrichaceae bacterium 3_1_53] Length = 266 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 + +R++ R+ G++ E+L E ++ + YE + L +++ E + + Sbjct: 5 IQERLKDLRVERGLTLEQLAEETHLSKSALGSYEGDKFKDISHYALIQLAKFYEVSVDYL 64 Query: 74 FDVSPTVCSDISSEEN 89 S T + + Sbjct: 65 LGRSQTKNHPNADLAD 80 >gi|295101547|emb|CBK99092.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 102 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 33/96 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + + + R +Q+++ + LGI+ Q YE G L + E I + Sbjct: 2 ENLTIIRKESHATQQEVADYLGISRQAYGNYESGKREPDYETLLKLGEYFNCSIDYLLGS 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 S V + SE + + ++ D Sbjct: 62 SRGVRYPLLSEFERNLLEQYRSATPAIQSAVCKLLD 97 >gi|261339922|ref|ZP_05967780.1| toxin-antitoxin system, antitoxin component, Xre family [Enterobacter cancerogenus ATCC 35316] gi|288317836|gb|EFC56774.1| toxin-antitoxin system, antitoxin component, Xre family [Enterobacter cancerogenus ATCC 35316] Length = 191 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 35/94 (37%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ + RIRL R G S +L + ++ + K E+G + A+ L +S Sbjct: 6 DNMNQRISARIRLERESRGWSLSELADRASVSRAMIHKIERGESSPTATLLARLSGAFGI 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 +S + + N + L+ Sbjct: 66 SMSTLIARAEMQEGKLLRLANQPVWRDPQTHYLR 99 >gi|190570720|ref|YP_001975078.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356992|emb|CAQ54381.1| Putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 279 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 53/138 (38%), Gaps = 12/138 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + + +G++I R++ +Q +L +G+ +++V YE G + L Sbjct: 1 MFVSVRDISSISYKIGQKIEDCRLMQRCTQAELASKIGLAYKEVTNYENGYIPITIEVLY 60 Query: 61 HISEVLESPISFFF---------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 I+ VL + + ++ N P ++ +I+ Sbjct: 61 VIARVLSVNVVDLLPKPITVREYEDEDEEILYLTKIYENQKLGKIVPSLIRFVHISEKIN 120 Query: 112 DVKVRQKIIELVRSIVSS 129 + R +E+ +++V Sbjct: 121 QEEAR---LEVAKNLVKE 135 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 23/138 (16%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + +G+RIR R+I +Q+ L + +G+T +++ +YE+G + +L Sbjct: 156 TEKEVCTDSIYYRIGQRIREWRLIRRYTQKDLADKVGLTLKEIHEYERGYTAITFDKLYE 215 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ L I T + + NR ID+ + ++ Sbjct: 216 MAGALSVNIKVLLPE--------------------TRESKEENRLLSLIDEYREQE---S 252 Query: 122 LVRSIVSSEKKYRTIEEE 139 LV+S+ K + ++ Sbjct: 253 LVKSLSEDMKSGKEKVKK 270 >gi|86559544|ref|YP_473365.1| putative LexA repressor [Clostridium perfringens CPE str. F4969] gi|168215112|ref|ZP_02640737.1| LexA repressor [Clostridium perfringens CPE str. F4969] gi|86475816|dbj|BAE78992.1| putative LexA repressor [Clostridium perfringens] gi|170713481|gb|EDT25663.1| LexA repressor [Clostridium perfringens CPE str. F4969] Length = 393 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 46/128 (35%), Gaps = 2/128 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R +SQE + L I + YE+ + L +SEV+ I + Sbjct: 14 LKDFRKDNKISQEDFAKQLEIARSTLSYYERAKSEPPIYTLVKMSEVMNCSIDELLGTTK 73 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV--RQKIIELVRSIVSSEKKYRTI 136 + + + + +L + + + +++ + + S+K+ + Sbjct: 74 AISNSAEEKFSCNELIEKIYYLNELIDKNRKNYEDLIMSKKRTERMFDELSMSKKRTERM 133 Query: 137 EEECMVEQ 144 +E + + Sbjct: 134 FDELSMSK 141 >gi|15612927|ref|NP_241230.1| transcriptional regulator [Bacillus halodurans C-125] gi|10172977|dbj|BAB04083.1| transcriptional regulator [Bacillus halodurans C-125] Length = 66 Score = 42.5 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ RM + M+QE+L +G+T Q + EKG I++ L + F Sbjct: 3 NNVKQTRMNMSMTQEQLARKVGVTRQTIGLIEKGEYNPSLQLCVAIAKNLHKTLDDLFWE 62 Query: 77 SPTV 80 Sbjct: 63 VDEG 66 >gi|330825889|ref|YP_004389192.1| helix-turn-helix domain-containing protein [Alicycliphilus denitrificans K601] gi|329311261|gb|AEB85676.1| helix-turn-helix domain protein [Alicycliphilus denitrificans K601] Length = 81 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +PV I +G IR R G+SQE+L I + E+G G + I++ +E Sbjct: 11 DPVLIALGGAIRRSRRARGISQEELAHRSVIDRFYMSSIERGGQNPGIVSIARIAKAMEM 70 Query: 69 PISFFFDVSP 78 ++ + Sbjct: 71 SMTELMAEAE 80 >gi|330508079|ref|YP_004384507.1| hypothetical protein MCON_2169 [Methanosaeta concilii GP-6] gi|328928887|gb|AEB68689.1| conserved domain protein [Methanosaeta concilii GP-6] Length = 74 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 29/70 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R+ R I ++QE+L + +G+T Q V EKG ++++ I F Sbjct: 3 NRVRVYRAINDLTQEELAKKIGVTRQTVLAIEKGKYSPSLDLAFKMAKIFGVKIEEIFIY 62 Query: 77 SPTVCSDISS 86 + Sbjct: 63 EDPQEKNDVE 72 >gi|239981008|ref|ZP_04703532.1| putative DNA-binding protein [Streptomyces albus J1074] Length = 307 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 18/125 (14%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R G SQ +L + ++ + E G + Q + Sbjct: 11 LGARIRRLRRAKGWSQTELAAKGATSQGRLAQMELGRETPSQTVCQLL------------ 58 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV--KVRQKIIELVRSIVSSEKK 132 D E + I +R F++ + ++R+ + V ++ +E Sbjct: 59 ----DQALDADGELLALWAHIERTPYPDWSRAFMRFEQRATRMRKYMAATVPGLLQTESY 114 Query: 133 YRTIE 137 R + Sbjct: 115 VRALL 119 >gi|229545190|ref|ZP_04433915.1| helix-turn-helix motif:protein of hypothetical function DUF955 [Enterococcus faecalis TX1322] gi|229309735|gb|EEN75722.1| helix-turn-helix motif:protein of hypothetical function DUF955 [Enterococcus faecalis TX1322] Length = 390 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ RM GM+ E+L E +G++ Q + KYE+ ++ L + + L P FF+ Sbjct: 11 GQRLKEARMYRGMTLEELKEKIGVSKQMISKYEQNISAPTPEILFSLLQALRFPKEFFYS 70 >gi|229155360|ref|ZP_04283470.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342] gi|228628075|gb|EEK84792.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 4342] Length = 404 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q L +T + + E G LQ+I+E LE SF Sbjct: 4 LGEKIKALRKEKKLTQTAL-AGSELTKSMLSQIENGKATPSMKTLQYIAEKLECETSFLL 62 Query: 75 DVSP 78 + Sbjct: 63 EEDD 66 >gi|225377835|ref|ZP_03755056.1| hypothetical protein ROSEINA2194_03494 [Roseburia inulinivorans DSM 16841] gi|225210273|gb|EEG92627.1| hypothetical protein ROSEINA2194_03494 [Roseburia inulinivorans DSM 16841] Length = 296 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 33/78 (42%), Gaps = 1/78 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++ E+L E ++ + YE + + L +++V E + + Sbjct: 35 IQERLKDLRVERGLTLEQLAEETHLSKSALGSYEGDNLKDISHHALIQLAKVYEVTVDYL 94 Query: 74 FDVSPTVCSDISSEENNV 91 S T + + Sbjct: 95 LGRSKTKNHPNADLADLH 112 >gi|153811805|ref|ZP_01964473.1| hypothetical protein RUMOBE_02198 [Ruminococcus obeum ATCC 29174] gi|149832208|gb|EDM87293.1| hypothetical protein RUMOBE_02198 [Ruminococcus obeum ATCC 29174] gi|295108702|emb|CBL22655.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 108 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 23/68 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R G +Q + E +G T + + E + + + + + FF Sbjct: 13 LGLAIKQAREERGWTQAYVAELVGKTDRTIMNIENKGQHPSFNLFFKLVTMFDISVDQFF 72 Query: 75 DVSPTVCS 82 Sbjct: 73 YREEQRDE 80 >gi|254303749|ref|ZP_04971107.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323941|gb|EDK89191.1| possible transcriptional regulator [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 182 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 2/103 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I V + I+ R +S L + ++ + + E+G S L I+ ++ Sbjct: 4 LNILVSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVSF 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + + ++ + + GL+ F I++ Sbjct: 64 NTLI--AQPKLPYKVTKLAEIEPILDMNGGLKNYSLFSDIENN 104 >gi|161598515|ref|YP_001573896.1| hypothetical protein pEDINA_p24 [Staphylococcus aureus] gi|27531748|dbj|BAC54516.1| unnamed protein product [Staphylococcus aureus] gi|270055238|gb|ACZ58731.1| transcriptional regulator, putative [Staphylococcus aureus] gi|270055460|gb|ACZ58953.1| transcriptional regulator, putative [Staphylococcus aureus] gi|282166034|gb|ADA80054.1| transcriptional regulator, putative [Staphylococcus aureus] Length = 66 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R G+SQ L + ++ Q + E ++ VLE+ ++ F Sbjct: 2 NKIKEFRKKKGLSQLDLARNILVSRQTINLIENNKYNPSLDLCLKLASVLETDLNSLFWE 61 Query: 77 SPTVC 81 Sbjct: 62 EKDHE 66 >gi|20091735|ref|NP_617810.1| transcriptional regulator [Methanosarcina acetivorans C2A] gi|19916914|gb|AAM06290.1| transcriptional regulator, Hth-3 family [Methanosarcina acetivorans C2A] Length = 184 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R + +S EK+ E L ++ + +KYE G + AS L I+ L+ ++ Sbjct: 6 KEIAARVRELRELSEISVEKMAEYLQVSPETYEKYESGTEDIPASILFEIAHRLQVDMAT 65 Query: 73 FFDVSPTVCS 82 + Sbjct: 66 LLTGEEPRMN 75 >gi|326790508|ref|YP_004308329.1| hypothetical protein Clole_1405 [Clostridium lentocellum DSM 5427] gi|326541272|gb|ADZ83131.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 159 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF 74 G++++ R +SQ++L E G++ +Q+ E G N L I++VL++P+ Sbjct: 3 GEKLKQLRKEKKISQKELAELSGLSISYIQQIESGKKNNPSLEALTAIAKVLDTPMYHLL 62 Query: 75 DVS 77 D S Sbjct: 63 DES 65 >gi|317499669|ref|ZP_07957928.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893031|gb|EFV15254.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 119 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 1/105 (0%) Query: 2 VGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + K + D +G IR R G+S+ LG+ + + + E + Sbjct: 1 MRKTKETHTFDFRPLGLAIREAREKAGLSRNDLGDKVFYGERHIADIENTGSHPSFQLFH 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + + + +F + V + + +S+ + L++ + Sbjct: 61 DLVTMFNISVDEYFYPAKKVTKSTARRQIETSLDLSSDNELKIIQ 105 >gi|315301442|ref|ZP_07872607.1| transcriptional regulator [Listeria ivanovii FSL F6-596] gi|313630189|gb|EFR98157.1| transcriptional regulator [Listeria ivanovii FSL F6-596] Length = 73 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q L L ++ Q + EKG I++ E + F + Sbjct: 11 NRVKTLREERGIAQNDLASILEVSRQTIHAIEKGKYNPSLELSLKIAKYFELAVEEIFQL 70 Query: 77 SPT 79 Sbjct: 71 EKE 73 >gi|292491070|ref|YP_003526509.1| hypothetical protein Nhal_0949 [Nitrosococcus halophilus Nc4] gi|291579665|gb|ADE14122.1| helix-turn-helix domain protein [Nitrosococcus halophilus Nc4] Length = 253 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 3/112 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + ++ R G SQ +L + + Q +Q+ E G + L ++ V + Sbjct: 72 YIADTVKRLREEQGWSQSELARRVKVKPQNIQQLEDGTVK-QPRYLMELARVFGVTVEEL 130 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELV 123 P + + E + + + R I D + Q I+ L+ Sbjct: 131 SSGGPRSKKEETPEYVLRLSRLIASASPEKIRAIESIIDAPPEKVQAILTLL 182 Score = 38.6 bits (88), Expect = 0.26, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 1/68 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+R++ R+ M+Q +L E G+ Q + K E G S + +++ L + Sbjct: 1 MNLGERLKKARLEANMTQRQLAETSGVKQQMISKLEVGRAS-ETSDIVSLAKALGVRSEW 59 Query: 73 FFDVSPTV 80 + Sbjct: 60 LDSGEEPM 67 >gi|302549850|ref|ZP_07302192.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302467468|gb|EFL30561.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] Length = 190 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 6/115 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V VG R+R R ++ L E GI+ + + E G+ + L I+ Sbjct: 2 TTDQVLAGVGPRLRQMRKEREVTLAALSETTGISVSTLSRLESGLRKPSLELLLPIARAH 61 Query: 67 ESPISFFFD----VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + + P V S ++ G + + ++ + ++ Sbjct: 62 QVALDELVGAPSAGDPRVRSKPIVMGGRTHWPLTRQPGG--LQAYKVLEPKRRQE 114 >gi|254557574|ref|YP_003063991.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300767504|ref|ZP_07077415.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181654|ref|YP_003925782.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254046501|gb|ACT63294.1| transcription regulator [Lactobacillus plantarum JDM1] gi|300494883|gb|EFK30040.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308047145|gb|ADN99688.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 273 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D VG RI R+ G+S KL +G+ + +EKG A RL ++ + Sbjct: 3 IDKQQVGNRIHQLRIAAGLSMAKLASAIGLAGKSTINDWEKGRTLANADRLAKVAAYFDV 62 Query: 69 PISFFFDVS 77 ++ S Sbjct: 63 STNYLLYGS 71 >gi|255690854|ref|ZP_05414529.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] gi|260623486|gb|EEX46357.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides finegoldii DSM 17565] Length = 132 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 8/138 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + +++GK+I R + GM+Q +LGE LGIT Q V K E+ ++ RL+ Sbjct: 1 METIENIKSNHLHLGKKIERVRRLRGMTQTELGELLGITKQAVSKMEQ-TEKIDDERLEK 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L + + + NN + + + N+ F + IE Sbjct: 60 IASALGVTTDGLKEYNEET---VLYNTNNFYENCGVKNAIGNNQTFNNFPIEQT----IE 112 Query: 122 LVRSIVSSEKKYRTIEEE 139 L ++ +K+ ++ Sbjct: 113 LFEKLLEKQKEQFESLKK 130 >gi|205374685|ref|ZP_03227479.1| putative phage repressor [Bacillus coahuilensis m4-4] Length = 115 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 43/102 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ ++++R + G+SQE+L + + ++KYE G + +S VL+ P S + Sbjct: 5 GEHLKMQRELHGLSQEELAFKARLGKRTIEKYENGEQIPDTQTILKLSTVLDIPASELME 64 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 I SE ++ I + R + + + Sbjct: 65 REIHQTGGIDSEIEQLVQEIGIKKAKLILRKAKEFTEDDFLR 106 >gi|167756656|ref|ZP_02428783.1| hypothetical protein CLORAM_02194 [Clostridium ramosum DSM 1402] gi|237733944|ref|ZP_04564425.1| predicted protein [Mollicutes bacterium D7] gi|167702831|gb|EDS17410.1| hypothetical protein CLORAM_02194 [Clostridium ramosum DSM 1402] gi|229383025|gb|EEO33116.1| predicted protein [Coprobacillus sp. D7] Length = 139 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 6/125 (4%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG----VNRVGASRLQHISEV 65 +DI +GK I+ R+ G SQ KL + G++ + E G + L I+ Sbjct: 4 IDIALIGKYIKSTRLSKGWSQSKLEKITGLSASSISNIELGNRGVSYNISLPSLVKIAHA 63 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 E + S S I E +L + ++ ++ ++ + E+ + Sbjct: 64 FEMSLVDLLSQSG-YLSAIGDECYEAEKSQIYIHNYELINIYHRLTPIQQQEFVQEIKKL 122 Query: 126 IVSSE 130 + S+ Sbjct: 123 VSQSD 127 >gi|71734173|ref|YP_274407.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|298486741|ref|ZP_07004797.1| Transcriptional regulator, Cro/CI family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554726|gb|AAZ33937.1| transcriptional regulator, Cro/CI family [Pseudomonas syringae pv. phaseolicola 1448A] gi|298158608|gb|EFH99672.1| Transcriptional regulator, Cro/CI family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 163 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 6/88 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K++ +G R++ R+ L +SQ LG G+ YE GV A L Sbjct: 14 IEDKRMTG-----IGARLKKERLRLKLSQSALGAIGGVETNAQGNYENGVRSPRADYLSS 68 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEEN 89 +S +++ + IS+ + Sbjct: 69 VSN-AGVDVAYVVTGLSSPAVTISNSQA 95 >gi|71736183|ref|YP_275333.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556736|gb|AAZ35947.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 189 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 2/109 (1%) Query: 2 VGNKKIPNP-VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + + P P V +V + +R R +SQ L E G++ + + E G V + L Sbjct: 1 MHKENSPRPAVLQHVSQNVRRLRNCADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLD 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++E LE S +P E IS + L R + Sbjct: 61 RVAEALEVAFSDLIQ-APENRDYSRINELAWAGTISGSKAVLLARAIAR 108 >gi|28379435|ref|NP_786327.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|28272274|emb|CAD65187.1| transcription regulator [Lactobacillus plantarum WCFS1] Length = 273 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 11 VDIN-VGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLES 68 +D VG RI R+ G+S KL +G+ + +EKG A RL ++ + Sbjct: 3 IDKQQVGNRIHQLRIAAGLSMAKLASAIGLAGKSTINDWEKGRTLANADRLAKVAAYFDV 62 Query: 69 PISFFFDVS 77 ++ S Sbjct: 63 STNYLLYGS 71 >gi|148260500|ref|YP_001234627.1| hypothetical protein Acry_1500 [Acidiphilium cryptum JF-5] gi|146402181|gb|ABQ30708.1| protein of unknown function DUF955 [Acidiphilium cryptum JF-5] Length = 469 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 31/74 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R R G++Q+KL LGI+ + E V A+ L ++E L+ ++ Sbjct: 6 IGRIVRRLRQEQGLTQQKLASRLGISTSYLNLIEHDQRGVTAALLIKLTETLKVDLAALS 65 Query: 75 DVSPTVCSDISSEE 88 E Sbjct: 66 GSDERQVEQALREA 79 >gi|126173068|ref|YP_001049217.1| helix-turn-helix domain-containing protein [Shewanella baltica OS155] gi|125996273|gb|ABN60348.1| helix-turn-helix domain protein [Shewanella baltica OS155] Length = 367 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R+ R G+S L +G++ ++KYE G +S L +++ L+ +FF Sbjct: 4 ERLERARKAAGLSMNALANEVGLSANAIKKYEHGTAMPSSSNLLKLAKALDVRTEYFF 61 >gi|329851805|ref|ZP_08266486.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328839654|gb|EGF89227.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 67 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 26/59 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 + +R R +G++Q L LG++ Q V E + IS V + P+ F+ Sbjct: 3 QYLRELRTEMGLTQADLAAKLGVSRQAVIALETDKHIPSLDLAYKISAVFDRPVESIFE 61 >gi|308068009|ref|YP_003869614.1| hypothetical protein PPE_01233 [Paenibacillus polymyxa E681] gi|305857288|gb|ADM69076.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 124 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 6/123 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI GM+++ + LGI+ +++G G ++L I+ ++ + + Sbjct: 4 IYHRIEELIKERGMTKKAFCQQLGISTGNFGDWKRGKTTPGTNKLIEIASFFDASLDWIM 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV-SSEKKY 133 + + D QLN + + + R I+E + EK Sbjct: 64 LGRDVQGEVLKESQ----DPYFFEASGQLNCQGEPLSEAE-RNFILEYIEFTRFRKEKNQ 118 Query: 134 RTI 136 R Sbjct: 119 RNS 121 >gi|294339778|emb|CAZ88140.1| putative lambda repressor [Thiomonas sp. 3As] Length = 159 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 + R+ G+SQ +LGE G V +YE G + + ++ L + F + Sbjct: 88 LASLRLAAGLSQRQLGEKCGWEQPHVSRYESGKHEPTLTVAMTLAAALGVGLDRFAE 144 >gi|197250724|ref|YP_002146366.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|200389331|ref|ZP_03215942.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|197214427|gb|ACH51824.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|199601776|gb|EDZ00322.1| transcriptional regulator, Cro/CI family [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 200 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 30/72 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ V +RI+ R +S ++L G++ + + E + L I+ + Sbjct: 16 STINAAVSQRIKQFRSQKKISLDELARRSGVSKGMLVEIEGCKANPSIALLCKIAAAMGV 75 Query: 69 PISFFFDVSPTV 80 ++ +V+ Sbjct: 76 SVADVVNVASEP 87 >gi|311747306|ref|ZP_07721091.1| putative transcriptional regulator [Algoriphagus sp. PR1] gi|126579020|gb|EAZ83184.1| putative transcriptional regulator [Algoriphagus sp. PR1] Length = 66 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I++ R ++Q+ L E + ++ Q + E G IS V + F++ Sbjct: 5 IKVERAKNNLTQQDLAEKVNVSRQTINSIEAGKYVPSTVLALKISRVFNVSLEEIFELEE 64 Query: 79 TV 80 Sbjct: 65 KD 66 >gi|115380409|ref|ZP_01467401.1| transcriptional regulator, XRE family, putative [Stigmatella aurantiaca DW4/3-1] gi|310818243|ref|YP_003950601.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|115362581|gb|EAU61824.1| transcriptional regulator, XRE family, putative [Stigmatella aurantiaca DW4/3-1] gi|309391315|gb|ADO68774.1| Transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length = 180 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 2/137 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +KK +G IR R L +SQ +L E L ++ + + + E+ R Sbjct: 27 MGMDKKPAKNPKKLLGPNIREARTRLNISQARLAELLEMSTEVLGRMERKEALPRLERFV 86 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ--K 118 + E+L + + V + + D + T + Q+ + + ++ + Sbjct: 87 LLCEILGTTPNQMLGFGVGVGLPQTPRMSPAYDEMMTLMRHFVVEMEAQLAEDERKELMQ 146 Query: 119 IIELVRSIVSSEKKYRT 135 I ++ +++ KK R Sbjct: 147 IFAHLQRLITLTKKRRA 163 >gi|290891105|ref|ZP_06554167.1| hypothetical protein AWRIB429_1557 [Oenococcus oeni AWRIB429] gi|290479069|gb|EFD87731.1| hypothetical protein AWRIB429_1557 [Oenococcus oeni AWRIB429] Length = 142 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 13/103 (12%), Positives = 34/103 (33%), Gaps = 9/103 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGIT---------FQQVQKYEKGVNRVGASRLQHISEVLE 67 +R+R R G++ ++L + L Q+ +E+G ++ +++ + Sbjct: 4 ERLRALRRGKGITLKQLAKALNKNISRGEAKNTESQIGNWERGERNPNYLEVKKLADYFD 63 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 I + D++ L N + + Sbjct: 64 VSIDYLVGRYNNDQVDLAKAMITSSKLTYNDTPLDNNDKYEIL 106 >gi|320333052|ref|YP_004169763.1| helix-turn-helix domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319754341|gb|ADV66098.1| helix-turn-helix domain protein [Deinococcus maricopensis DSM 21211] Length = 188 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 2/88 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +RIR+ R SQ L E G+ + K E+G A L ++ + Sbjct: 6 DDTSALIARRIRVEREARQWSQADLAERAGVAKATISKVERGDMSPTAVTLVRLATAFDL 65 Query: 69 PISFFF--DVSPTVCSDISSEENNVMDF 94 ++ + +S++ D Sbjct: 66 TLAGLLLRAETEGARLSRASDQPTWRDP 93 >gi|317481961|ref|ZP_07940986.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916528|gb|EFV37925.1| helix-turn-helix protein [Bifidobacterium sp. 12_1_47BFAA] Length = 362 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R ++QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLG 64 Query: 77 S 77 Sbjct: 65 D 65 >gi|296453479|ref|YP_003660622.1| transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296182910|gb|ADG99791.1| Predicted transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] Length = 356 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R ++QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLG 64 Query: 77 S 77 Sbjct: 65 D 65 >gi|295107315|emb|CBL04858.1| Cupin domain. [Gordonibacter pamelaeae 7-10-1-b] Length = 183 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 24/69 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R ++ E + L + +++E V S + H++ + Sbjct: 7 EIGLRIKGLREACDVTVEDMARELEVPVGTYEEWEATGADVPISAIYHMAHHFGVEFTEI 66 Query: 74 FDVSPTVCS 82 + Sbjct: 67 LTGTAAKLQ 75 >gi|291517434|emb|CBK71050.1| Predicted transcriptional regulators [Bifidobacterium longum subsp. longum F8] Length = 356 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R ++QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLG 64 Query: 77 S 77 Sbjct: 65 D 65 >gi|288904825|ref|YP_003430047.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|288731551|emb|CBI13106.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] Length = 65 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R+ LG+SQ L + +G+ Q V E ++E L++ ++ F Sbjct: 2 NRVREFRLNLGISQLALAKQIGVARQTVNLIENNKYNPSLDLCIKLAEALQTDLNTLF 59 >gi|229590309|ref|YP_002872428.1| e14 prophage; putative phage repressor [Pseudomonas fluorescens SBW25] gi|229362175|emb|CAY49077.1| e14 prophage; putative phage repressor [Pseudomonas fluorescens SBW25] Length = 235 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI R G+SQ L + + ++ YEK + I+ L+ + Sbjct: 25 LGSRIAHYREKAGLSQAALAKACGWKSQSRIGNYEKDAREPNLDDISKIAHELKIDPAAL 84 Query: 74 F 74 Sbjct: 85 L 85 >gi|291457121|ref|ZP_06596511.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] gi|291380956|gb|EFE88474.1| putative helix-turn-helix protein [Bifidobacterium breve DSM 20213] Length = 356 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R ++QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLG 64 Query: 77 S 77 Sbjct: 65 D 65 >gi|217960750|ref|YP_002339314.1| DNA-binding protein [Bacillus cereus AH187] gi|217064586|gb|ACJ78836.1| DNA-binding protein [Bacillus cereus AH187] Length = 67 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R L M+QE L + +G+ + + EKG I++ L S I F Sbjct: 6 RIKEYRAKLNMTQEDLAKNVGVRRETISHLEKGKYNPSLQLAYDIAKALHSTIDEVFIFE 65 Query: 78 P 78 Sbjct: 66 D 66 >gi|163868978|ref|YP_001610208.1| transcriptional regulator [Bartonella tribocorum CIP 105476] gi|161018655|emb|CAK02213.1| transcriptional regulator [Bartonella tribocorum CIP 105476] Length = 52 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 26/49 (53%), Positives = 36/49 (73%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+SQ+ LG LG++FQQ+QKYEKG NR+ A I++ L+ PISFF Sbjct: 1 MGLSQKALGNFLGVSFQQIQKYEKGANRISAKCFLEIAQKLQVPISFFM 49 >gi|77166000|ref|YP_344525.1| XRE family transcriptional regulator [Nitrosococcus oceani ATCC 19707] gi|76884314|gb|ABA58995.1| transcriptional regulator, XRE family [Nitrosococcus oceani ATCC 19707] Length = 165 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 3/83 (3%) Query: 2 VGNKKIPNPVDINV--GKR-IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 VG + +P+ V + G+ I++ R+ G++Q L E ++ + EKG Sbjct: 82 VGGEAMPHEVVKRLVEGENPIKVWRIYRGLTQHNLAEQAELSQSYLAMIEKGEREGTVKA 141 Query: 59 LQHISEVLESPISFFFDVSPTVC 81 L+ I++VL I D Sbjct: 142 LKQIAKVLGVDIDDLVDTRDQDV 164 >gi|53690271|ref|ZP_00121920.2| COG1396: Predicted transcriptional regulators [Bifidobacterium longum DJO10A] gi|189439959|ref|YP_001955040.1| Xre family transcriptional regulator [Bifidobacterium longum DJO10A] gi|189428394|gb|ACD98542.1| Xre-type transcriptional regulator [Bifidobacterium longum DJO10A] Length = 362 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R ++QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ANLQYLRAQRNLTQERLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLG 64 Query: 77 S 77 Sbjct: 65 D 65 >gi|16804367|ref|NP_465852.1| hypothetical protein lmo2328 [Listeria monocytogenes EGD-e] gi|47096027|ref|ZP_00233629.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes str. 1/2a F6854] gi|254938319|ref|ZP_05270016.1| transcriptional regulator [Listeria monocytogenes F6900] gi|16411817|emb|CAD00406.1| lmo2328 [Listeria monocytogenes EGD-e] gi|47015624|gb|EAL06555.1| transcriptional regulator, Cro/CI family [Listeria monocytogenes str. 1/2a F6854] gi|258610931|gb|EEW23539.1| transcriptional regulator [Listeria monocytogenes F6900] Length = 80 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R G++Q+ + E + E+G I+ VL+ + FFD Sbjct: 5 LKKIREENGLTQQDVAELADVERTTYASIEQGRRNPSVVNAMRIASVLDFEWTIFFDD 62 >gi|269123676|ref|YP_003306253.1| helix-turn-helix domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268315002|gb|ACZ01376.1| helix-turn-helix domain protein [Streptobacillus moniliformis DSM 12112] Length = 130 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 7/121 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF---- 73 R++ I +SQ L + + Y G N ++ IS+VL + Sbjct: 10 RLKEALKIKNISQRMLALQTNLAPATIANYLNGRNSAKYENIEKISKVLNVDPQWLDGYD 69 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSSE 130 F S + E+ + ++++T + ID ++Q +IE +RS+ + + Sbjct: 70 VPFSNLYANYSFTAEEKKYLDNWLNTNQLYFDSLNITSIDKENLKQAMIESFIRSLKNKD 129 Query: 131 K 131 K Sbjct: 130 K 130 >gi|228937302|ref|ZP_04099955.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228822360|gb|EEM68336.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 127 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 48/123 (39%), Gaps = 3/123 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK I+ R I G+S++++ E L T++ V +E G + ++L+ I+ L + Sbjct: 8 VGKNIKKLRAIKGVSRKEMAEDLNTTYRTVSSWETGEKKPRLNKLEEIASYLNVSVPSLL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + S + L ++ + D + EL++ + + Sbjct: 68 KNEIPDEDLLKSIKGEDP---VERLARLLYERYMSVPDKHKPRIEEELLKYASQLKTQVE 124 Query: 135 TIE 137 E Sbjct: 125 QEE 127 >gi|300779104|ref|ZP_07088962.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300504614|gb|EFK35754.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 258 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 I R M+Q++L + L +T + YE G L IS+ I V Sbjct: 7 NIVFLRGKKNMTQQELADLLFLTRSRYVAYEYGRTEPPIEILLRISKFYNISIDLLLTVD 66 >gi|227511733|ref|ZP_03941782.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus buchneri ATCC 11577] gi|227085053|gb|EEI20365.1| bifunctional S24 family peptidase/transcriptional regulator [Lactobacillus buchneri ATCC 11577] Length = 241 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 6/129 (4%) Query: 17 KRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 + +R R +SQ L L + V ++E G + ++ I+ + ++ Sbjct: 4 ENLRYLRKKHHLSQTTLAHRLGRKSVASVSEWESGKYTPQLAIIEKIATLFNVDVADLLY 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI-----DDVKVRQKIIELVRSIVSSE 130 +D S + + S + + + +I + + Q IEL +++ E Sbjct: 64 RELGKANDPKSRSESFLSMYSKLTPDRQQKVYQRILELKQAEPEDDQTPIELPVTVLKLE 123 Query: 131 KKYRTIEEE 139 K I +E Sbjct: 124 KTDLAITDE 132 >gi|227549950|ref|ZP_03979999.1| possible DNA-binding protein [Corynebacterium lipophiloflavum DSM 44291] gi|227077966|gb|EEI15929.1| possible DNA-binding protein [Corynebacterium lipophiloflavum DSM 44291] Length = 143 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVLES 68 + +R+R R + G+SQ +L E G++ + E+ S + I+ L Sbjct: 17 LAERLRALREMRGLSQRRLAELAGVSRSLISNLERNQYNTARSADPTLSTVYRIAHALHV 76 Query: 69 PISFFFDVSPTVCSDISSEENN 90 P S +V +E+ Sbjct: 77 PPVALLPASDSVVKARCAEDAA 98 >gi|226328474|ref|ZP_03803992.1| hypothetical protein PROPEN_02368 [Proteus penneri ATCC 35198] gi|225203207|gb|EEG85561.1| hypothetical protein PROPEN_02368 [Proteus penneri ATCC 35198] Length = 102 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 36/74 (48%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ VG+RI+ +R L ++ ++G LGI+ Q + E G ++ +L IS +L Sbjct: 2 SELNTIVGQRIKQKRKQLKLTGIEMGRRLGISQQHYSRLENGHIKITVDQLITISYILGI 61 Query: 69 PISFFFDVSPTVCS 82 S T+ Sbjct: 62 SPQSLLLTSETMSP 75 >gi|184200390|ref|YP_001854597.1| Xre family DNA-binding protein [Kocuria rhizophila DC2201] gi|183580620|dbj|BAG29091.1| putative Xre family DNA-binding protein [Kocuria rhizophila DC2201] Length = 71 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + I +G ++R R+ G++QE L E LG+T + E+G + + ++E L Sbjct: 1 MATSLRITLGTQVRKVRLSRGLTQEVLAERLGVTPRYFAGIERGERNLTLDSVDALAEQL 60 Query: 67 ESPISFFF 74 Sbjct: 61 GVEAQSLL 68 >gi|167626085|ref|YP_001676379.1| XRE family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167356107|gb|ABZ78720.1| transcriptional regulator, XRE family [Shewanella halifaxensis HAW-EB4] Length = 69 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R +Q L E L ++ Q + EKG ++ + E PI F+ Sbjct: 3 NRLKVLRAERDWTQADLAEKLEVSRQTINAIEKGKYDPSLPLAFKVARLFEMPIEAIFED 62 Query: 77 SPT 79 Sbjct: 63 ETE 65 >gi|158423643|ref|YP_001524935.1| XRE family-like protein [Azorhizobium caulinodans ORS 571] gi|158330532|dbj|BAF88017.1| helix-turn-helix XRE-family-like protein [Azorhizobium caulinodans ORS 571] Length = 217 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 33/86 (38%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M G + + V +G+ ++ R ++ +++ E G++ + K E + +L Sbjct: 1 MTGRQNGADTVSTQLGECLKAARQARKLTLKQVAERTGLSLSTLSKVENHQMSLTYDKLL 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISS 86 ++ L I+ F + Sbjct: 61 QLTNGLGIAIAELFHSAADRAPTAPQ 86 >gi|23455722|ref|NP_695031.1| Repressor [Lactococcus phage r1t] gi|1353520|gb|AAB18678.1| Repressor protein [Lactococcus phage r1t] Length = 278 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 8/117 (6%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++P +D R G + ++ GE LG + + K+ KGV Sbjct: 1 MKKIRLPEMID--------YFRKENGWTMKEFGEKLGKSESAISKWIKGVRSPMVEDFDK 52 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + + + + + + +S + LN Q+D+ +K Sbjct: 53 MVNLFNTDPETLMYGASDLSTTLSEINKISSQLEEPRQKVVLNTANNQLDEQNQEKK 109 >gi|84489092|ref|YP_447324.1| hypothetical protein Msp_0265 [Methanosphaera stadtmanae DSM 3091] gi|84372411|gb|ABC56681.1| conserved hypothetical protein [Methanosphaera stadtmanae DSM 3091] Length = 190 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 34/94 (36%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + + R++ R + +S +++ E L + + KYE G + AS L S + Sbjct: 4 NTIQKEIASRVKDMREVCEISVQEMSEKLDVPVETYTKYESGEIDIPASILYEASIIFNV 63 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 S T S + + + + Sbjct: 64 DTSLLLTGEDTRMSVFTVTRKDKGVRVDRREAYD 97 >gi|75761606|ref|ZP_00741559.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490910|gb|EAO54173.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 70 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R +Q+ L + +G+T Q + EKG + ++ V + + F + Sbjct: 5 NRVRELRARFRWTQQDLADAIGVTRQTIGLIEKGDYSPSVTMALKLAAVFQVTVEEVFYL 64 Query: 77 SPTV 80 Sbjct: 65 KGEE 68 >gi|328554201|gb|AEB24693.1| transcriptional regulator SinR [Bacillus amyloliquefaciens TA208] Length = 111 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 1/77 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+RI+ R G S +L E G+ + E+ L+ +S VL+ + Sbjct: 1 MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 60 Query: 73 FFDVSPTVCSDISSEEN 89 D D + Sbjct: 61 LLDEKHETEYDGQLDSE 77 >gi|322806607|emb|CBZ04176.1| transcriptional regulator, XRE family [Clostridium botulinum H04402 065] Length = 154 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 6/105 (5%) Query: 16 GKRIRLRRMILGMSQEKLGE------CLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 GKR ++ R+ G++Q++L + G T V +YE L + Sbjct: 6 GKRFKMLRLEKGLNQQELIDDFNKKYHYGFTKSAVSQYENDKRIPEIGALDAFANYFNVS 65 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 I F S D S + LN ++ + + Sbjct: 66 IDFLLGKSDIRNMDDSEPSKQLTKKDEKEIEKILNETKERLGNAE 110 >gi|299134081|ref|ZP_07027274.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] gi|298590828|gb|EFI51030.1| transcriptional regulator, XRE family [Afipia sp. 1NLS2] Length = 230 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 1/102 (0%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K +D +G+RIR R + + + L + +G+T + K E G L +++ Sbjct: 35 KGEQEIDT-LGRRIRQLRKMQERTLDSLAQEVGLTKGYLSKVETGRQTPPLGTLSKLAKA 93 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 L + ++ + S+ E +V+ + ++ F Sbjct: 94 LGTDLAGLVENGAGERSEPGYEGVSVVRADERRNVVRGATSF 135 >gi|327197613|ref|YP_004301304.1| gp28 [Brochothrix phage NF5] gi|296245436|gb|ADH03050.1| gp28 [Brochothrix phage NF5] Length = 232 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 14/122 (11%), Positives = 38/122 (31%), Gaps = 10/122 (8%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + + I+ ++Q++L +GI+ + Y + +Q I++ Sbjct: 6 NKIISSNIKKYIKENNITQKELANKVGISPSTMSDYMNLRSNPSHGVIQKIADYFGI--- 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK------VRQKIIELVRS 125 T + + N N Q+++ ++K+ L ++ Sbjct: 63 -LKSDIDTTYKEPNGISNIYSQLNEERQTKVYNYASRQLEEQNSNVTSIDKKKVYVLGKT 121 Query: 126 IV 127 Sbjct: 122 AA 123 >gi|325678167|ref|ZP_08157797.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324110172|gb|EGC04358.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 221 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 31/65 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG+R+R R+++G++Q++ E GI+ + E+G +++ + + P Sbjct: 11 KEVGERLRGVRLLMGITQKQAAEATGISQSFLSSLERGQKSACTAQIISLIRYYKVPYDM 70 Query: 73 FFDVS 77 F Sbjct: 71 IFGSE 75 >gi|282162049|gb|ADA79913.1| hypothetical protein CU5_35 [Lactobacillus phage phiPYB5] Length = 64 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R GM+QE+ + +G++ Q YE G ++ I + + Sbjct: 5 LKALRANKGMTQEEAAKAIGVSQYTWQNYEHGKTFPDVPTIEKIEKKFNVTYNDI 59 >gi|257063582|ref|YP_003143254.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] gi|256791235|gb|ACV21905.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM 20476] Length = 76 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI R GMSQ +L L + + + E G S L I++ L+ Sbjct: 13 RKLGVRIAKLREEKGMSQRRLALVLELDRVTLNRIESGTANPTISTLMRIADGLDVAFEE 72 Query: 73 FF 74 F Sbjct: 73 LF 74 >gi|229099598|ref|ZP_04230526.1| hypothetical protein bcere0020_48160 [Bacillus cereus Rock3-29] gi|228683894|gb|EEL37844.1| hypothetical protein bcere0020_48160 [Bacillus cereus Rock3-29] Length = 65 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 5 NKIKELRKQNHITQVEMAKVMQVTRQTIIAIENHHYNPSLELSLKIAKYFGMKVEEIFTL 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|254490244|ref|ZP_05103434.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254490560|ref|ZP_05103746.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254490688|ref|ZP_05103873.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254490854|ref|ZP_05104037.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254490891|ref|ZP_05104074.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254490935|ref|ZP_05104117.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254491345|ref|ZP_05104525.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254491994|ref|ZP_05105172.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254492163|ref|ZP_05105338.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|254492671|ref|ZP_05105842.1| Peptidase S24-like domain protein [Methylophaga thiooxidans DMS010] gi|224462192|gb|EEF78470.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224462715|gb|EEF78989.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224462809|gb|EEF79080.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224463474|gb|EEF79743.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224463844|gb|EEF80111.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224464026|gb|EEF80292.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224464063|gb|EEF80329.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224464144|gb|EEF80408.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224464304|gb|EEF80567.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] gi|224464591|gb|EEF80850.1| Peptidase S24-like domain protein [Methylophaga thiooxydans DMS010] Length = 272 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G RI R L ++Q+ + + +GIT Q KYEKG A L+ I L + Sbjct: 5 VYIGGRILEERKRLRLTQQDVADFVGITRQSQAKYEKGERSPDAIYLEKIL-GLGFNSYY 63 Query: 73 FFDVSPTVCSDISSEENNV 91 + T + + ++ Sbjct: 64 VLTGNETFPTRSHLDVDDN 82 >gi|224282243|ref|ZP_03645565.1| putative phage regulatory protein [Bifidobacterium bifidum NCIMB 41171] gi|311063583|ref|YP_003970308.1| XRE family transcriptional regulator [Bifidobacterium bifidum PRL2010] gi|313139384|ref|ZP_07801577.1| predicted protein [Bifidobacterium bifidum NCIMB 41171] gi|310865902|gb|ADP35271.1| XRE family transcriptional regulator [Bifidobacterium bifidum PRL2010] gi|313131894|gb|EFR49511.1| predicted protein [Bifidobacterium bifidum NCIMB 41171] Length = 113 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 11/112 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R G++Q +L G T + KY G +S L +I+ L + F Sbjct: 4 ALGDRMRKLMRQHGINQSQLAARAGTTQPNISKYLAGEREPTSSTLANIATALHTTSEFL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + + R+ + + + R+ I+ L+ + Sbjct: 64 LGLPESNADTPFGTIKAYC-----------ARHGGDLSEAETRELIMTLLTA 104 >gi|157155496|ref|YP_001461935.1| putative repressor protein [Escherichia coli E24377A] gi|191166562|ref|ZP_03028391.1| putative repressor protein [Escherichia coli B7A] gi|218694199|ref|YP_002401866.1| Regulatory protein CI from bacteriophage origin [Escherichia coli 55989] gi|218703832|ref|YP_002411351.1| regulatory protein CI from bacteriophage origin [Escherichia coli UMN026] gi|300819564|ref|ZP_07099758.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|300895848|ref|ZP_07114428.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|331676460|ref|ZP_08377157.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli H591] gi|157077526|gb|ABV17234.1| putative repressor protein [Escherichia coli E24377A] gi|190903367|gb|EDV63087.1| putative repressor protein [Escherichia coli B7A] gi|218350931|emb|CAU96632.1| Regulatory protein CI from bacteriophage origin [Escherichia coli 55989] gi|218430929|emb|CAR11803.1| Regulatory protein CI from bacteriophage origin [Escherichia coli UMN026] gi|300360234|gb|EFJ76104.1| peptidase S24-like domain protein [Escherichia coli MS 198-1] gi|300527890|gb|EFK48952.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|320196986|gb|EFW71605.1| Regulatory protein CI from bacteriophage origin [Escherichia coli WV_060327] gi|320643661|gb|EFX12798.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H- str. 493-89] gi|320648981|gb|EFX17575.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H- str. H 2687] gi|320665037|gb|EFX32141.1| Regulatory protein CI from bacteriophage origin [Escherichia coli O157:H7 str. LSU-61] gi|323153453|gb|EFZ39708.1| helix-turn-helix family protein [Escherichia coli EPECa14] gi|325497847|gb|EGC95706.1| putative repressor protein [Escherichia fergusonii ECD227] gi|331075953|gb|EGI47250.1| 26 kDa repressor protein (Regulatory protein CI) [Escherichia coli H591] Length = 251 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWLSSG 87 Query: 77 SPTVCSDISS 86 + Sbjct: 88 VGNMSDSTVQ 97 >gi|254976707|ref|ZP_05273179.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255094090|ref|ZP_05323568.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255315841|ref|ZP_05357424.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255518503|ref|ZP_05386179.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255651622|ref|ZP_05398524.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|306521425|ref|ZP_07407772.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] Length = 70 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 26/63 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L M+Q +L + +G+ + + E G I++V + + F+ Sbjct: 8 KIKEYREKLLMTQNELAKSVGVRRETIVHLENGKYNPSLKLAMDIAKVFGTTVENLFEFI 67 Query: 78 PTV 80 Sbjct: 68 EED 70 >gi|110677608|ref|YP_680615.1| DNA-binding protein [Roseobacter denitrificans OCh 114] gi|109453724|gb|ABG29929.1| DNA-binding protein [Roseobacter denitrificans OCh 114] Length = 187 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 53/120 (44%), Gaps = 5/120 (4%) Query: 7 IPNPVDINVGK---RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + + D +G+ R++ R + G+S + + + G++ V + E+G + S L +++ Sbjct: 1 MADDRDDILGQLPARLKDARRVQGLSLDAVAKLSGVSRSMVSQIERGESSPTISTLWNLT 60 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 L+ + DV+ T + +V + GL++ + + ++ ELV Sbjct: 61 RALQVDFAGLLDVASTQSKIETLRSADVPTIENLGKGLRI--RILSPPEEAGNHEVYELV 118 >gi|28210273|ref|NP_781217.1| transcriptional regulator [Clostridium tetani E88] gi|28202709|gb|AAO35154.1| transcriptional regulator [Clostridium tetani E88] Length = 436 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L+++SE L+ I + Sbjct: 8 LGEKIKRRRKELNMTLKDL-AGDRITPGQISLVESGKSNPSMDLLEYLSEALDVSIEYLM 66 Query: 75 DVSPTVCSDI 84 + T + Sbjct: 67 ETEETQAEKV 76 >gi|24379134|ref|NP_721089.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|290580856|ref|YP_003485248.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|24377038|gb|AAN58395.1|AE014909_11 putative transcriptional regulator [Streptococcus mutans UA159] gi|254997755|dbj|BAH88356.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 81 Score = 42.5 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 26/71 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q +L + GI+ Q V E+ I++ P+ F + Sbjct: 6 NRLKELRARDGINQTQLAKLAGISRQTVSLIERNEYTPSVVIAFKIAKSFGEPVENVFSL 65 Query: 77 SPTVCSDISSE 87 + Sbjct: 66 MEEENEKVKRS 76 >gi|328958843|ref|YP_004373754.1| putative HTH-type transcriptional regulator [Carnobacterium sp. 17-4] gi|328675167|gb|AEB31212.1| putative HTH-type transcriptional regulator [Carnobacterium sp. 17-4] Length = 65 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI++ R+ + ++Q++L E + +T Q + EKG +I + + F Sbjct: 3 NRIKVARIQVDLTQQQLAEKVDVTRQTISLIEKGKYNPSLKLCLNICHAVNKTLDELF 60 >gi|325289439|ref|YP_004265620.1| transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] gi|324964840|gb|ADY55619.1| transcriptional regulator, XRE family [Syntrophobotulus glycolicus DSM 8271] Length = 65 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++++ R+ MSQE L +G+T Q + E G I + L ++ F Sbjct: 4 KKLKIARIECDMSQEDLANIVGVTRQTIGLIESGNYNPTLKLCIAICKALHKNLNDLFWE 63 Query: 77 SP 78 P Sbjct: 64 EP 65 >gi|302536034|ref|ZP_07288376.1| conserved hypothetical protein [Streptomyces sp. C] gi|302444929|gb|EFL16745.1| conserved hypothetical protein [Streptomyces sp. C] Length = 283 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 2/140 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K P +G +R R G+S + L + E G V + R++ Sbjct: 1 MPPRKAPTARQRRLGSELRKIREHAGISMTEAASQLSTDRTNMSNVESGRFGVSSDRVRT 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + P + + D + + + L L V +R I Sbjct: 61 WARHYGCPDTAYVDALAAMAEERGRGWWDDYRDDLPASLLDLCELEHHA--VALRSVQIM 118 Query: 122 LVRSIVSSEKKYRTIEEECM 141 + ++ +E R + EE + Sbjct: 119 HMPGLLQTEDYARAVFEEAV 138 >gi|289623616|ref|ZP_06456570.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648203|ref|ZP_06479546.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330866658|gb|EGH01367.1| DNA-binding protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 378 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R G+S ++ L + ++++++E G R + Q + V P F F P V Sbjct: 16 RERAGLSAAQVARKLPVKPERIKEWEAGKTRPTFLQAQKWASVAHVPFGFLFLPQPPVEQ 75 Query: 83 DISSEENNVMDFISTPDGLQLN 104 + V + L+L Sbjct: 76 LPLPDLRTVGNSAPLRPSLELV 97 >gi|251790395|ref|YP_003005116.1| XRE family transcriptional regulator [Dickeya zeae Ech1591] gi|247539016|gb|ACT07637.1| transcriptional regulator, XRE family [Dickeya zeae Ech1591] Length = 128 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 16/118 (13%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R +Q+ + +G+ Q KYE G++ A +L +SE+ + I Sbjct: 11 GQRLKALRNQQRRTQKDIAARIGVQLSQYNKYESGMHIPPADKLIQLSELFSTTIDHLLR 70 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSEK 131 S D ++ +L F + + ++ +I+L+ ++V + Sbjct: 71 GS--------------HDELAPISNTRLMERFKALAQCLPEEQETVIKLIDAVVVKHR 114 >gi|239999287|ref|ZP_04719211.1| putative phage repressor protein, putative phage associated protein [Neisseria gonorrhoeae 35/02] Length = 236 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +SQE L + ++ + E G N+ A+ + ++++L+ + Sbjct: 7 RLKEARKNKNLSQENLAKLAEVSQSTIAALESGRNK-KATNIAKLAKILDVSAFWLETGE 65 Query: 78 PTVCSDISSEENNVMD 93 + + + + + Sbjct: 66 GSRNTPVLINPDLPHE 81 >gi|271966081|ref|YP_003340277.1| hypothetical protein Sros_4684 [Streptosporangium roseum DSM 43021] gi|270509256|gb|ACZ87534.1| hypothetical protein Sros_4684 [Streptosporangium roseum DSM 43021] Length = 224 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 1/91 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI RR LG+ +E+L GI + E+ + ++ L++ + Sbjct: 11 LGRRITRRRESLGLDREQLANRAGIAPAYLAYVEQRAAAPAIETINRLACALDTSTAELL 70 Query: 75 DVSPTVCSDISSEENNVM-DFISTPDGLQLN 104 + + + + + + T + L+L Sbjct: 71 GGTIDLPPGRGTAARHPELEKLDTKECLRLI 101 >gi|258654402|ref|YP_003203558.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557627|gb|ACV80569.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 161 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 6/114 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISE 64 + +G R+R R G+S + E ++ V YE+G V ++L ++E Sbjct: 1 MTQDYAHALGARLRAIRAQQGLSLHGVEEKSEGRWKAVVVGSYERGDRAVTVAKLAELAE 60 Query: 65 VLESPISFFFDVSPTVCSDISSE----ENNVMDFISTPDGLQLNRYFIQIDDVK 114 P++ + S + + + T L RY I + Sbjct: 61 FYGVPVAELLPDARATRRGAPSPKLVIDLQRLAELPTHQAGPLARYAAAIQSQR 114 >gi|228944445|ref|ZP_04106818.1| Transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815347|gb|EEM61595.1| Transcriptional regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 66 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ L ++Q++L E +G+T Q + EKG I ++ ++ F Sbjct: 4 SKVKVARVQLDLTQQQLAEKVGVTRQTISLIEKGKYNPSLDLCLKICYAVDKTLNDLFWE 63 Query: 77 SPT 79 Sbjct: 64 EKE 66 >gi|197285329|ref|YP_002151201.1| fimbrial operon regulator [Proteus mirabilis HI4320] gi|194682816|emb|CAR43084.1| fimbrial operon regulator [Proteus mirabilis HI4320] Length = 111 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G + L R M+ +LG+ L I+ QQ+ +YE+G+N++ L HI + + IS FF Sbjct: 23 IGYELFLLRQRNSMTGAELGKLLNISQQQISRYERGINKIPIDILFHILNIFDISISDFF 82 Query: 75 D 75 + Sbjct: 83 E 83 >gi|160944849|ref|ZP_02092076.1| hypothetical protein FAEPRAM212_02365 [Faecalibacterium prausnitzii M21/2] gi|158444033|gb|EDP21037.1| hypothetical protein FAEPRAM212_02365 [Faecalibacterium prausnitzii M21/2] Length = 110 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 14/108 (12%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI R+ G S+ L E G+T + + + + + ++ I L +S FF+ Sbjct: 13 RIDRERLARGWSEYTLAENSGLTQSTLSTWRRRNLQPNVTSIEKICHGLGITLSQFFEED 72 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 V +++ L + ++ R I++L+R+ Sbjct: 73 AAVHHLTEEQKS-------------LLTIWDRL-SPSQRTAILDLIRA 106 >gi|153853196|ref|ZP_01994605.1| hypothetical protein DORLON_00590 [Dorea longicatena DSM 13814] gi|149753982|gb|EDM63913.1| hypothetical protein DORLON_00590 [Dorea longicatena DSM 13814] Length = 66 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R MSQ +L + +G+ + + E G I++V I F Sbjct: 5 NIKEFREQNKMSQTELAQLVGVRRETIGHLENGHYNPSLVLAAKIAKVFNVTIEDMF 61 >gi|153002768|ref|YP_001368449.1| XRE family transcriptional regulator [Shewanella baltica OS185] gi|160877511|ref|YP_001556827.1| XRE family transcriptional regulator [Shewanella baltica OS195] gi|151367386|gb|ABS10386.1| transcriptional regulator, XRE family [Shewanella baltica OS185] gi|160863033|gb|ABX51567.1| transcriptional regulator, XRE family [Shewanella baltica OS195] gi|315269711|gb|ADT96564.1| helix-turn-helix domain protein [Shewanella baltica OS678] Length = 68 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + I G ++R R LG+SQ+K+ I V + E+G + + ++EVL Sbjct: 3 DLAIQFGAKLREERKRLGISQDKMALLAEIDRSYVGRIERGEVNITLEKAYQLAEVLGCD 62 Query: 70 ISFFF 74 I Sbjct: 63 IRVLL 67 >gi|10956547|ref|NP_052190.1| hypothetical protein pLH1_p02 [Lactobacillus helveticus] gi|260103286|ref|ZP_05753523.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] gi|2687735|emb|CAA10961.1| hypothetical protein [Lactobacillus helveticus] gi|260082909|gb|EEW67029.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075] Length = 284 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 53/143 (37%), Gaps = 12/143 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++ R+ G +Q K + I+ K E +++ L + +S Sbjct: 1 MTIGSLLKKYRLEQGKTQAKFVGKI-ISRSHYAKVENDQHQINVRDLITLLNYNGIDLSD 59 Query: 73 FF---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI--------DDVKVRQKIIE 121 FF + + + + +M+ + R QI +D K++ +++ Sbjct: 60 FFMQINETYESYKEQILHQRKLMEQAYYKVDIDQMRKIKQIINTSKLSENDKKMQNLLVD 119 Query: 122 LVRSIVSSEKKYRTIEEECMVEQ 144 +++ + K + + E+ Sbjct: 120 GFMELLNVDGKSNHALRKELKEK 142 >gi|23455773|ref|NP_695143.1| repressor [Lactobacillus phage phig1e] gi|7450563|pir||T13178 repressor protein - Lactobacillus phage phi-gle gi|1926322|emb|CAA66782.1| repressor [Lactobacillus phage phig1e] gi|1926374|emb|CAA62089.1| gp132 [Lactobacillus phage phig1e] Length = 132 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 28/71 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R + G +Q+++ + +GI+ + E N L+ ++ E + Sbjct: 6 IGNRLKELRNMQGKTQDEVAKSIGISRARYSHLENERNEPDNELLKLLASYYEVSTDYLL 65 Query: 75 DVSPTVCSDIS 85 S Sbjct: 66 GNSEKSHKSPD 76 >gi|298243565|ref|ZP_06967372.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297556619|gb|EFH90483.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 452 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 44/110 (40%), Gaps = 6/110 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + ++ + + +VG+++R R+ ++Q +L + + E+G L+ Sbjct: 1 MSPEQTSSKIGKSVGEKLRSARIAQHLTQSQL-AAPDFSVSYISAIERGQIHPSLRALEI 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 ++ L + + + N + + + +++ FI+I+ Sbjct: 60 LATRLGLSSTQLL-----PNRSQAEDRANSLFPLPEREEEEIDLAFIEIN 104 >gi|284036935|ref|YP_003386865.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283816228|gb|ADB38066.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 500 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 45/114 (39%), Gaps = 6/114 (5%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 + + + G ++R R+ G+S +L + ++ V + EKG A ++ ++ ++ Sbjct: 5 ADHIRLLFGLKLRQLRLDKGLSVSELAQKASLSVSYVTEIEKGRKYPKADKISALANAMQ 64 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + +S + + D + + ++ ID + + + E Sbjct: 65 VDYDTLVSL------KLSKKLEPISDLLRSKFLTEIPLELFGIDPSDLLELLAE 112 >gi|225375675|ref|ZP_03752896.1| hypothetical protein ROSEINA2194_01300 [Roseburia inulinivorans DSM 16841] gi|257437564|ref|ZP_05613319.1| putative transcriptional regulator [Faecalibacterium prausnitzii A2-165] gi|225212445|gb|EEG94799.1| hypothetical protein ROSEINA2194_01300 [Roseburia inulinivorans DSM 16841] gi|257199871|gb|EEU98155.1| putative transcriptional regulator [Faecalibacterium prausnitzii A2-165] Length = 119 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 19/135 (14%), Positives = 41/135 (30%), Gaps = 17/135 (12%) Query: 1 MVGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M K+ D G+ I+ R S++K+ + + I+ + + E Sbjct: 1 MNMAKRPVEKYDFKAFGEAIKEARKGRKESRKKVSDEMYISPRYLANIENNGQHPSLQIF 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + + + F SP + + ++D +S + + Sbjct: 61 FELIQRYNISVDQFLFDSPAGKDTNRRQLDALLDDMSDTG----------------IRIV 104 Query: 120 IELVRSIVSSEKKYR 134 I EK+ R Sbjct: 105 TATAEEIAKVEKEGR 119 >gi|196250362|ref|ZP_03149055.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|196210251|gb|EDY05017.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 120 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 35/105 (33%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IR R +S + + +GI+ + + E G + L+ E +S FF Sbjct: 7 GKLIRKLRRENNLSMIEFAKMVGISQPSLSRIENGNQEITFQFLEKACETFNISMSDFFR 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + + S + + I + ++ + Sbjct: 67 ILEEKSKLQEIHLRKENNVNSEEELDTILANMISTLSFEQKKGLY 111 >gi|154496243|ref|ZP_02034939.1| hypothetical protein BACCAP_00528 [Bacteroides capillosus ATCC 29799] gi|150274326|gb|EDN01403.1| hypothetical protein BACCAP_00528 [Bacteroides capillosus ATCC 29799] Length = 67 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI R ++QE+L E +G+T Q + E G +++ I F Sbjct: 3 NRIAQLRKEGRITQEELAEAVGVTRQTIISLENGRYNASLLLAHKLAQYFHLTIEELFVF 62 Query: 77 SPTVC 81 Sbjct: 63 EEDEA 67 >gi|139438088|ref|ZP_01771641.1| Hypothetical protein COLAER_00629 [Collinsella aerofaciens ATCC 25986] gi|133776285|gb|EBA40105.1| Hypothetical protein COLAER_00629 [Collinsella aerofaciens ATCC 25986] Length = 275 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 29/59 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +++ R ++QE+L L +T Q V ++E+G G ++ I+ V P+ + Sbjct: 5 EKLIAVRRAHHLTQEQLATKLFVTRQAVSRWERGEVTPGIDMMKLIAAVTGEPLPHLLE 63 >gi|118577346|ref|YP_899586.1| XRE family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504851|gb|ABL01333.1| transcriptional regulator, XRE family [Pelobacter propionicus DSM 2379] Length = 130 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 21/121 (17%), Positives = 48/121 (39%), Gaps = 3/121 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + ++G R++ R ILGMSQ + + + Q YE G N G L+ +S+ + Sbjct: 5 DKIIEHIGTRLKEVRNILGMSQTAIAKAADSSLPSWQGYEAGKNIPGGKVLEALSK-MGI 63 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 +++ + + D S+ D + + + + + ++E + Sbjct: 64 DVNWVLTGNGKMMLDSSNTTPFREDI--KLKVIDILESMSEPNQWRAAALLLEFKEELSK 121 Query: 129 S 129 Sbjct: 122 Q 122 >gi|116748595|ref|YP_845282.1| XRE family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116697659|gb|ABK16847.1| transcriptional regulator, XRE family [Syntrophobacter fumaroxidans MPOB] Length = 204 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 30/85 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R R ++ + L G++ + + E + L ++ L+ + FF Sbjct: 18 IGNKVRELRQKNHLTLQDLAVKTGLSKPFLSQIENNKVVPPVATLFRLARALKVALGHFF 77 Query: 75 DVSPTVCSDISSEENNVMDFISTPD 99 S + + + P Sbjct: 78 QESVEDDRIAITRKKERVRLDRRPH 102 >gi|323465548|gb|ADX77701.1| transcriptional regulator, putative [Staphylococcus pseudintermedius ED99] Length = 63 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 21/61 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G+SQ +L +G++ Q + E I L ++ F Sbjct: 3 NRLVEYRKKCGISQLELSRKVGVSRQTINLIENNKYNPSLKLCISICLTLGVTLNDIFWE 62 Query: 77 S 77 Sbjct: 63 D 63 >gi|322812212|pdb|2XJ3|A Chain A, High Resolution Structure Of The T55c Mutant Of Cylr2. gi|322812213|pdb|2XJ3|B Chain B, High Resolution Structure Of The T55c Mutant Of Cylr2 Length = 66 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 23/63 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++L R +SQ +L L ++ Q + EK I+ L P+ F Sbjct: 4 NNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNCPLEDIFQW 63 Query: 77 SPT 79 P Sbjct: 64 QPE 66 >gi|309776168|ref|ZP_07671159.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 3_1_53] gi|308916119|gb|EFP61868.1| transcriptional regulator, Cro/CI family [Erysipelotrichaceae bacterium 3_1_53] Length = 92 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 34/90 (37%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 ++ +P G ++R R GM+ +L I F ++K E GV+ L + + Sbjct: 3 QRTKHPATELTGMKLRELREKAGMTLRELANRSMIDFTYIKKIELGVSDPSIITLDILLQ 62 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDF 94 ++ + FFD + D Sbjct: 63 AMDLNLQDFFDSEYEYNFLQIEGNSEKNDI 92 >gi|308174255|ref|YP_003920960.1| post-exponential-phase response transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|307607119|emb|CBI43490.1| transcriptional regulator for post-exponential-phase response [Bacillus amyloliquefaciens DSM 7] gi|328912595|gb|AEB64191.1| transcriptional regulator for post-exponential-phase response [Bacillus amyloliquefaciens LL3] Length = 113 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G+RI+ R G S +L E G+ + E+ L+ +S VL+ + Sbjct: 4 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 63 Query: 74 FDVSPTVCSDISSEEN 89 D D + Sbjct: 64 LDEKHETEYDGQLDSE 79 >gi|306833064|ref|ZP_07466195.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424773|gb|EFM27908.1| XRE family transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 75 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 25/67 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q +L + ++ Q + E+ I+ + P+ F + Sbjct: 9 NRLKELRARDGLNQTQLAKLAKVSRQTISLLERNEYTPSVIIALRIAHIFNEPVENVFSL 68 Query: 77 SPTVCSD 83 + Sbjct: 69 DEEGEEE 75 >gi|302338806|ref|YP_003804012.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301635991|gb|ADK81418.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 191 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 37/102 (36%), Gaps = 3/102 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VGK I+ R ++ L + G++ + + E + + I++ L+ ++ Sbjct: 9 QVGKNIQKVRKEKRLTLGHLSQVSGVSKAMLSQIETEKVNPTIATIWKIAQGLQISLNTL 68 Query: 74 F---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + SE +D +++ F ++D Sbjct: 69 LKSNNDEGRRFHVSRSEHITSLDAEEEGVHIKVLSPFSMVED 110 >gi|291518638|emb|CBK73859.1| Helix-turn-helix [Butyrivibrio fibrisolvens 16/4] Length = 114 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 46/112 (41%), Gaps = 4/112 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +RI GM+Q + GI + +++ A ++ IS+VL+ Sbjct: 1 MIISERIFKLMEEKGMTQLEFSAGTGIAQSTISDWKRKKTNPSADKIMVISDVLDVSP-- 58 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 F++ + + + + ++ + ++ + K + ++++ V+ Sbjct: 59 -FELLQDTIPGKGAGDVDFIIASKGTPEYEVVKKLEKL-NKKTKAEVVDYVK 108 >gi|257067141|ref|YP_003153397.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256799021|gb|ACV29676.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 81 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R GM+Q +LGE +G++ Q + E+G ++ V E + F + Sbjct: 17 NNLSSLRKEKGMNQTELGEKVGVSRQTISLIERGDYNPSIVVALSLARVFEVKVEDIFIL 76 Query: 77 SP 78 Sbjct: 77 EE 78 >gi|302530338|ref|ZP_07282680.1| transcriptional regulator [Streptomyces sp. AA4] gi|302439233|gb|EFL11049.1| transcriptional regulator [Streptomyces sp. AA4] Length = 183 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 26/69 (37%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + VG R+R R + ++L GI+ + + E G + L IS P Sbjct: 7 DIIAAVGPRLRHFRRQRNCTLDELSTATGISISTLSRLESGQRKATLELLLPISRAHRVP 66 Query: 70 ISFFFDVSP 78 + SP Sbjct: 67 LDELVGTSP 75 >gi|302875172|ref|YP_003843805.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307688848|ref|ZP_07631294.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578029|gb|ADL52041.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 88 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++I RM+ G++Q + GI + V KYE G + L+ I + L I++F Sbjct: 32 EKIFKLRMLHGLTQRQFAARCGIGYSSVCKYELG-YTPSSYNLEKIIDALNLDINYF 87 >gi|284030440|ref|YP_003380371.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809733|gb|ADB31572.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 508 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 37/94 (39%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +G IR R G +Q +L + LG + V + EKG + L I E L Sbjct: 1 MTDDYLSRIGNLIRDARKHRGWTQTQLADVLGTSQSAVNRIEKGHQNLTLEMLARIGEAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDG 100 +S I + + + +D S+ + Sbjct: 61 DSEIVSLGGGPVHLRVAGGRQLSGSIDVKSSKNA 94 >gi|227485105|ref|ZP_03915421.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236938|gb|EEI86953.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 67 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ + RIR R +G+SQ L + +G+ + + YE I +V + I Sbjct: 1 MDVLIENRIREFRKEMGLSQNALAKMVGLKRRSIMAYESNTISPTLETAYKICKVFDKDI 60 Query: 71 SFFF 74 F Sbjct: 61 KEVF 64 >gi|268592649|ref|ZP_06126870.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] gi|291311788|gb|EFE52241.1| toxin-antitoxin system, antitoxin component, Xre family [Providencia rettgeri DSM 1131] Length = 80 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N N + +GK I+ +R+ ++ +K+ E + I+ + KYE G + L Sbjct: 1 MNKN----NVGNAVLGKFIKQKRIEHQITTKKMAELISISEKSYIKYEDGSLSIFIEHLM 56 Query: 61 HISEVLESPISFFFD 75 IS L + FD Sbjct: 57 VISNTLNVDVKTLFD 71 >gi|167761483|ref|ZP_02433610.1| hypothetical protein CLOSCI_03893 [Clostridium scindens ATCC 35704] gi|167661149|gb|EDS05279.1| hypothetical protein CLOSCI_03893 [Clostridium scindens ATCC 35704] Length = 80 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 27/80 (33%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + K + ++ + R+ R G+ QE+L L ++ Q + E G Sbjct: 1 MYGKDAFHKKEVFMKNRLEELRKERGIKQEELAAELEVSRQTIGSLENGRYNPSILLAFK 60 Query: 62 ISEVLESPISFFFDVSPTVC 81 +S+ I F Sbjct: 61 LSKYFGLKIEDIFIYEEEEK 80 >gi|157829815|pdb|1ADR|A Chain A, Determination Of The Nuclear Magnetic Resonance Structure Of The Dna-Binding Domain Of The P22 C2 Repressor (1-76) In Solution And Comparison With The Dna-Binding Domain Of The 434 Repressor Length = 76 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +S+ L+ + Sbjct: 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLK 66 Query: 76 VS 77 Sbjct: 67 GD 68 >gi|23505482|ref|NP_700411.1| regulatory protein [Salmonella phage ST64B] gi|168822352|ref|ZP_02834352.1| regulatory protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|23379229|gb|AAL25916.1| Sb38 [Salmonella phage ST64B] gi|205341260|gb|EDZ28024.1| regulatory protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|261247208|emb|CBG25032.1| phage encoded transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994039|gb|ACY88924.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158553|emb|CBW18064.1| predicted bacteriophage protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|320086315|emb|CBY96088.1| 26 kDa repressor protein Regulatory protein CI [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|323130316|gb|ADX17746.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988930|gb|AEF07913.1| hypothetical protein STMUK_2020 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 231 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPIS 71 +N+G R+R R M +L E +G+ + + E G + + +++ L I+ Sbjct: 1 MNIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIA 60 Query: 72 FFFDVSP 78 F P Sbjct: 61 ELFTSDP 67 >gi|30265281|ref|NP_847658.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47530816|ref|YP_022165.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49188093|ref|YP_031346.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|118480295|ref|YP_897446.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|165870026|ref|ZP_02214683.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167636539|ref|ZP_02394835.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167641808|ref|ZP_02400049.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170689396|ref|ZP_02880588.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170708952|ref|ZP_02899384.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177654077|ref|ZP_02936087.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190567768|ref|ZP_03020680.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196045702|ref|ZP_03112932.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225867228|ref|YP_002752606.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227818018|ref|YP_002818027.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229603683|ref|YP_002869472.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254686321|ref|ZP_05150180.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724317|ref|ZP_05186101.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254735184|ref|ZP_05192893.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254744390|ref|ZP_05202070.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254755692|ref|ZP_05207725.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254759577|ref|ZP_05211602.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30259959|gb|AAP29144.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47505964|gb|AAT34640.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49182020|gb|AAT57396.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|118419520|gb|ABK87939.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|164714349|gb|EDR19869.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167510220|gb|EDR85625.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167528071|gb|EDR90871.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170126117|gb|EDS95012.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170666623|gb|EDT17394.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172080960|gb|EDT66039.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190561184|gb|EDV15157.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|196023533|gb|EDX62210.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225788303|gb|ACO28520.1| DNA-binding protein [Bacillus cereus 03BB102] gi|227006050|gb|ACP15793.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229268091|gb|ACQ49728.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 63 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 2 NNVKQYRKSEGLSQLELAKRVKVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 59 >gi|85704021|ref|ZP_01035124.1| DNA-binding protein, putative [Roseovarius sp. 217] gi|85671341|gb|EAQ26199.1| DNA-binding protein, putative [Roseovarius sp. 217] Length = 190 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ L E LG + + + E+ ++ S L+ ++EVL P+S F Sbjct: 12 LGADLRALRKARGLTLAALAEMLGRSVGWLSQVERDLSEPSISDLRQVAEVLGVPMSLLF 71 Query: 75 DVSPTVCSD 83 + + Sbjct: 72 GHASAPAEE 80 >gi|323703831|ref|ZP_08115467.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] gi|323531188|gb|EGB21091.1| transcriptional regulator, XRE family [Desulfotomaculum nigrificans DSM 574] Length = 103 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ RI R +G + +L + I++ + + E G + L+ I L +S Sbjct: 1 MDIASRIIELRKNIGFNTNQLAKLANISYSTLYEVETGKKQPSVYTLEKICTALGITLSE 60 Query: 73 FFDVSPTVCS 82 FF + Sbjct: 61 FFSDTQEQEP 70 >gi|311033076|ref|ZP_07711166.1| hypothetical protein Bm3-1_21479 [Bacillus sp. m3-13] Length = 68 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 26/66 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R M+QE L +G++ Q + E G +IS+V + I F + Sbjct: 3 NRIKDLRKAAKMTQEDLAVQVGVSRQSIIAIESGKYNPSLELAYNISKVFDCIIEEVFIL 62 Query: 77 SPTVCS 82 Sbjct: 63 EEGGEE 68 >gi|258592092|emb|CBE68397.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 410 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G R+R R G+ L + +G+T V +YE V ++ I+ L+ P +F Sbjct: 10 GARLREAREARGLPAIALADLIGVTRAAVSQYENSVQTPRPEVMEKIARTLQLPQEYF 67 >gi|257484651|ref|ZP_05638692.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320323844|gb|EFW79928.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. B076] gi|330888838|gb|EGH21499.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] gi|330986306|gb|EGH84409.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011269|gb|EGH91325.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 189 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 2/109 (1%) Query: 2 VGNKKIPNP-VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + + P P V +V + +R R +SQ L E G++ + + E G V + L Sbjct: 1 MHKENSPRPAVLQHVSQNVRRLRNCADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLD 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++E LE S +P E IS + L R + Sbjct: 61 RVAEALEVAFSDLIQ-APENRDYSRINELAWAGTISGSKAVLLARAIAR 108 >gi|258653119|ref|YP_003202275.1| XRE family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556344|gb|ACV79286.1| transcriptional regulator, XRE family [Nakamurella multipartita DSM 44233] Length = 225 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 V + PN +G +++ R + E++ E G+T + K E+ + + L Sbjct: 5 VATEPAPNEETARIGAKLKAIRRAQRRTLEEVAEASGLTKGFLSKIERDLASASVAALLR 64 Query: 62 ISEVLESPISFFFDVSPTVC 81 I L P+S F+ T Sbjct: 65 ICATLGIPLSSLFESDSTGE 84 >gi|284032249|ref|YP_003382180.1| XRE family transcriptional regulator [Kribbella flavida DSM 17836] gi|283811542|gb|ADB33381.1| transcriptional regulator, XRE family [Kribbella flavida DSM 17836] Length = 171 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 2/95 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISE 64 +P+ +G ++R R G+S + E ++ V YE+G V +L +++ Sbjct: 1 MPSEYAKTLGGKLRAIRQQQGLSLHGVEEKSKGRWKAVVVGSYERGDRAVTVQKLAELAD 60 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 PI S + + ++ ++D + Sbjct: 61 FYGVPIRELLPGSASAAAAAAAPPRLILDLEALQH 95 >gi|298345338|ref|YP_003718025.1| transcriptional regulator [Mobiluncus curtisii ATCC 43063] gi|315655757|ref|ZP_07908655.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC 51333] gi|298235399|gb|ADI66531.1| transcriptional regulator [Mobiluncus curtisii ATCC 43063] gi|315489821|gb|EFU79448.1| XRE family transcriptional regulator [Mobiluncus curtisii ATCC 51333] Length = 112 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R G+SQ +L + +G T Q + E + + I + L + F Sbjct: 53 ERMRAARKEAGLSQAELAKDVGATRQTICSIEASNYNPSLNLCKLICKKLGKTLDELFWD 112 >gi|255305199|ref|ZP_05349371.1| putative phage regulatory protein [Clostridium difficile ATCC 43255] Length = 67 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R + ++Q++L + ++ + + + E+G+ G Q I+++L I F Sbjct: 4 SNLKYYRELNKLTQKQLALEVNVSKEYISQIERGIKNPGFFTAQKIAKILGITIDELF 61 >gi|160944362|ref|ZP_02091590.1| hypothetical protein FAEPRAM212_01872 [Faecalibacterium prausnitzii M21/2] gi|158444144|gb|EDP21148.1| hypothetical protein FAEPRAM212_01872 [Faecalibacterium prausnitzii M21/2] Length = 102 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 1/94 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+ R+ G+S + LG ++ E G S +I E L FFD Sbjct: 8 KRLAELRIQKGVSARDMSLSLGQNPGYIRTIESGSAFPAMSNFFYICEYLNVTPQEFFDF 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 I++ + +D + L + I Sbjct: 68 KEDHADGINALVD-QLDKLDEEQIQALTAFIKTI 100 >gi|153010591|ref|YP_001371805.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562479|gb|ABS15976.1| putative transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 91 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R R+ G+SQ+ L G+ + E+G L ++ LE ++ FF Sbjct: 10 NLRRIRVARGISQDDLALISGVERAYTGRLERGAMNPTVKTLAKLATALECSVADFFAEP 69 Query: 78 PTVC 81 Sbjct: 70 DEEA 73 >gi|146343555|ref|YP_001208603.1| anaerobic benzoate catabolism transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146196361|emb|CAL80388.1| Shikimate kinase [Bradyrhizobium sp. ORS278] Length = 307 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 38/99 (38%), Gaps = 1/99 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R + GMS++ L E GI+ + + + E G V L+ I+ + +P+ Sbjct: 24 QLGQRVRRMRGLAGMSRKVLAEVSGISERYIAQLESGKGNVSIVLLRRIANAINAPLDDI 83 Query: 74 F-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 P+ + + +L Sbjct: 84 IPGGEPSPDWPVIRDLLKKASPSQIAQVRELLAGGASAP 122 >gi|153815483|ref|ZP_01968151.1| hypothetical protein RUMTOR_01718 [Ruminococcus torques ATCC 27756] gi|145847125|gb|EDK24043.1| hypothetical protein RUMTOR_01718 [Ruminococcus torques ATCC 27756] Length = 78 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGIT-----FQQVQKYEKGVNRVGASRLQHISEVL 66 D+++GK I+ R ++Q+++ L + K E + S L ++++ Sbjct: 7 DMDIGKNIQAIRYQNKLTQDQVIAKLNLMGISMSKSTYAKLETNRMNIKVSELVALAKIF 66 Query: 67 ESPISFFFDV 76 + I+ FF Sbjct: 67 HTDINTFFSG 76 >gi|126697940|ref|YP_001086837.1| putative transcriptional regulator [Clostridium difficile 630] gi|306832963|ref|ZP_07466095.1| transcriptional regulator [Streptococcus bovis ATCC 700338] gi|317499673|ref|ZP_07957932.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|115249377|emb|CAJ67192.1| Transcriptional regulator, HTH-type Tn916-like,CTn1-Orf15 [Clostridium difficile] gi|304424862|gb|EFM27996.1| transcriptional regulator [Streptococcus bovis ATCC 700338] gi|316893035|gb|EFV15258.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 66 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RI+ R M Q+ L + +G+ + + EKG +I++ I Sbjct: 1 MIKNRIKEFRARYDMKQDDLAKAVGVRRETIGNLEKGRYNPSLVLAWNIAKTFHVTIEEV 60 Query: 74 FDVSPT 79 F V Sbjct: 61 FTVIDD 66 >gi|30263299|ref|NP_845676.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47528673|ref|YP_020022.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186148|ref|YP_029400.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|52142204|ref|YP_084624.1| transcriptional regulator [Bacillus cereus E33L] gi|65320628|ref|ZP_00393587.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|167632351|ref|ZP_02390678.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|167637490|ref|ZP_02395770.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170684933|ref|ZP_02876158.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170705136|ref|ZP_02895601.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177650155|ref|ZP_02933156.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564790|ref|ZP_03017711.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227813831|ref|YP_002813840.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229602863|ref|YP_002867558.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|254685913|ref|ZP_05149772.1| DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254723316|ref|ZP_05185104.1| DNA-binding protein [Bacillus anthracis str. A1055] gi|254738383|ref|ZP_05196086.1| DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254742450|ref|ZP_05200135.1| DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254752699|ref|ZP_05204735.1| DNA-binding protein [Bacillus anthracis str. Vollum] gi|254761214|ref|ZP_05213238.1| DNA-binding protein [Bacillus anthracis str. Australia 94] gi|30257933|gb|AAP27162.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47503821|gb|AAT32497.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49180075|gb|AAT55451.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|51975673|gb|AAU17223.1| transcriptional regulator [Bacillus cereus E33L] gi|167514997|gb|EDR90363.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|167532649|gb|EDR95285.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|170129991|gb|EDS98853.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170671193|gb|EDT21931.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172084107|gb|EDT69166.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564107|gb|EDV18071.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227004328|gb|ACP14071.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229267271|gb|ACQ48908.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 67 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L M+QE L + + + + + EKG I+ L S I F Sbjct: 6 KIKEYRTKLNMTQEDLAKQVSVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 78 PT 79 Sbjct: 66 DE 67 >gi|325859811|ref|ZP_08172941.1| cupin domain protein [Prevotella denticola CRIS 18C-A] gi|327312760|ref|YP_004328197.1| cupin domain-containing protein [Prevotella denticola F0289] gi|325482737|gb|EGC85740.1| cupin domain protein [Prevotella denticola CRIS 18C-A] gi|326945558|gb|AEA21443.1| cupin domain protein [Prevotella denticola F0289] Length = 184 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R++ R L +S +++ E G+T ++ K E G + + SRL +S + Sbjct: 6 KQIGERLKGLRESLDVSVQEMAETCGVTEEKYLKMEGGESDLAVSRLYKLSRKYGVSLDV 65 Query: 73 FFDVSPTVCSD 83 Sbjct: 66 LMFGEEPRMGA 76 >gi|317405899|gb|EFV86181.1| AroK1 protein [Achromobacter xylosoxidans C54] Length = 303 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 4/100 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R I GM+++ L + G++ + + E GV L I++ ++ Sbjct: 20 VALGERVRRLRAIRGMTRKGLSQVTGVSERHLANLEHGVGNASILVLLQIAKAFNCALAE 79 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + S + + + +S L R + Sbjct: 80 LVGD----VTTESPDWLLIRELLSGRTESDLQRAREALTQ 115 >gi|312866700|ref|ZP_07726914.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] gi|311097781|gb|EFQ56011.1| DNA-binding helix-turn-helix protein [Streptococcus parasanguinis F0405] Length = 251 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 56/143 (39%), Gaps = 20/143 (13%) Query: 1 MVGNKKIPNPVDIN----VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 M + +P D + ++IR G Q +L GI + Y KG + Sbjct: 1 MARGRGKASPQDREALRIISEKIRELLKEQGKKQIELSRITGIPASTLTGYVKGTSLPVP 60 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 L+ I+ + ++ + DF+ ++ R + Q+ D + Sbjct: 61 ENLEKIAAFFQVAVAEI-------------DPRLRNDFVVIDSEIE--RLYKQL-DEGNQ 104 Query: 117 QKIIELVRSIVSSEKKYRTIEEE 139 + ++ +S+++ +K+ + IE++ Sbjct: 105 ENLLSYGKSLLTHQKEKQKIEKQ 127 >gi|307332662|ref|ZP_07611696.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306881694|gb|EFN12846.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 398 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 25/68 (36%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P ++ + G RI R ++Q+ L ++ + K E G S + + L Sbjct: 1 MPQSIEEHTGARIARTRRERDLTQQGLAMRANVSKSLLSKVECGQRPASPSLIAACARAL 60 Query: 67 ESPISFFF 74 S Sbjct: 61 SVTTSDLL 68 >gi|302384441|ref|YP_003820264.1| XRE family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302195069|gb|ADL02641.1| transcriptional regulator, XRE family [Brevundimonas subvibrioides ATCC 15264] Length = 72 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 5/75 (6%) Query: 5 KKIPNPVDINVGKRIRLRRMILG-MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 K P P+ RIR R G M+Q L +G+T Q + E+G I+ Sbjct: 2 TKGPPPIR----NRIRELRFHAGEMTQADLAARIGMTRQTIVAMEQGKYSPSLEAAFRIA 57 Query: 64 EVLESPISFFFDVSP 78 V I+ F Sbjct: 58 AVFGVEITAVFQWDG 72 >gi|254819472|ref|ZP_05224473.1| XRE family transcriptional regulator [Mycobacterium intracellulare ATCC 13950] Length = 64 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RI+ R+ G +QE+L G++ + E G + RL I++ L S + Sbjct: 2 GTRIQTLRIDRGYTQEELALRSGVSRNVLIDLEYGRRGILHERLFDIAKALGVSASELLE 61 Query: 76 V 76 Sbjct: 62 G 62 >gi|237748842|ref|ZP_04579322.1| predicted protein [Oxalobacter formigenes OXCC13] gi|229380204|gb|EEO30295.1| predicted protein [Oxalobacter formigenes OXCC13] Length = 99 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G I+ R+ G SQ KL E + + E + S LQ I L PI Sbjct: 1 MDIGNAIKTCRIRRGYSQTKLAELAECSVSYLSLIEHNQRDITLSTLQKICHALHVPIGI 60 Query: 73 FF------DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D + ++ +E + + + N Sbjct: 61 LLFLGTSHDEFGEMSKELEAELAKSTLVLLSAPANEQN 98 >gi|220930159|ref|YP_002507068.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220000487|gb|ACL77088.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 133 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 52/128 (40%), Gaps = 8/128 (6%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF-- 74 +RI+ R + G SQ+++ E LG + + + KYE G + S+ + Sbjct: 6 ERIKSLRNVKGQSQKEVAEALGKSREAISKYELGEREPDPDVIVQFSQHFNVSSDYMLGI 65 Query: 75 -----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV-RQKIIELVRSIVS 128 +++P S E +++ + + + +++ D + + + + ++ Sbjct: 66 TDHIENIAPGKRMPYSPELYAFEKYLNDQNFIPYLQLAVRMKDSNIEINQFEKFINKVIR 125 Query: 129 SEKKYRTI 136 EKK + Sbjct: 126 QEKKQKHT 133 >gi|210615468|ref|ZP_03290595.1| hypothetical protein CLONEX_02811 [Clostridium nexile DSM 1787] gi|210150317|gb|EEA81326.1| hypothetical protein CLONEX_02811 [Clostridium nexile DSM 1787] Length = 234 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 32/90 (35%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +RI+ Q + + GI+ Y G A +L+ I++ L+ + + + Sbjct: 11 IAERIKFAMKAKNKKQVDIVKDTGISKGAFSSYLSGQYNPKADKLELIADSLDVDLRWLY 70 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + + + F + L Sbjct: 71 GENVPMENAQKDDTALQYVFYNNSCSEYLL 100 >gi|153810945|ref|ZP_01963613.1| hypothetical protein RUMOBE_01335 [Ruminococcus obeum ATCC 29174] gi|149832833|gb|EDM87916.1| hypothetical protein RUMOBE_01335 [Ruminococcus obeum ATCC 29174] Length = 71 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 31/66 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R+ +SQ+K+GE L I+ + YE G + L +++ ++ I + Sbjct: 4 QRIQDLRIDSDLSQKKIGEILHISQRSYSHYETGSRNIPIEMLIRLADYYDTTIDYLVGR 63 Query: 77 SPTVCS 82 + Sbjct: 64 TDNKEP 69 >gi|54024079|ref|YP_118321.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54015587|dbj|BAD56957.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 204 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 33/75 (44%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +++R R G+S ++ +GI+ + K E S + ++ L+ P Sbjct: 14 DLEAAIARQVRALRRAAGLSVAEMAAKVGISKAMLSKIENAQTSCSLSTVARLAAGLDVP 73 Query: 70 ISFFFDVSPTVCSDI 84 ++ F + + + Sbjct: 74 VTSLFRGADSAREAV 88 >gi|330719156|ref|ZP_08313756.1| XRE family transcriptional regulator [Leuconostoc fallax KCTC 3537] Length = 251 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 29/59 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++++ +R+ L +Q ++ L +T Q + +E L +S+ L+ + Sbjct: 1 MKLGQKLKQKRIQLNKTQAQMATDLHVTRQTISHWENDDTYPSLDMLVMLSDYLDFSLD 59 >gi|329848824|ref|ZP_08263852.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] gi|328843887|gb|EGF93456.1| helix-turn-helix family protein [Asticcacaulis biprosthecum C19] Length = 75 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 26/56 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R RM G SQ +LGE LG++ Q V E G + ++ + P+ F Sbjct: 5 VRDLRMQRGWSQGELGERLGVSRQAVNAIEVGKHDPSLELTFKLAYLFNLPVEEIF 60 >gi|254557808|ref|YP_003064225.1| transcription regulator [Lactobacillus plantarum JDM1] gi|254046735|gb|ACT63528.1| transcription regulator [Lactobacillus plantarum JDM1] Length = 212 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 7/61 (11%), Positives = 27/61 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++++ R ++Q ++ E L ++ + + +E + L +S++ + + Sbjct: 5 EKLKVCRKHAQLTQSQVAEQLHVSRKTISGWENDHSFPDVGSLVQLSDIYDVRLDDLMRD 64 Query: 77 S 77 Sbjct: 65 D 65 >gi|256825390|ref|YP_003149350.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Kytococcus sedentarius DSM 20547] gi|256688783|gb|ACV06585.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Kytococcus sedentarius DSM 20547] Length = 507 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 30/64 (46%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +G IR R+ GM+Q ++ + L + V + E+G + + +SE L Sbjct: 1 MTDEYLARIGNLIRDARLHRGMTQTQVADILNTSQSAVARMEQGKQNLSLETVAKVSEAL 60 Query: 67 ESPI 70 + I Sbjct: 61 DHDI 64 >gi|256852239|ref|ZP_05557625.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN] gi|260661729|ref|ZP_05862640.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN] gi|282933641|ref|ZP_06339005.1| transcriptional regulator, XRE family [Lactobacillus jensenii 208-1] gi|297205595|ref|ZP_06922991.1| conserved hypothetical protein [Lactobacillus jensenii JV-V16] gi|256615285|gb|EEU20476.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN] gi|260547476|gb|EEX23455.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN] gi|281302229|gb|EFA94467.1| transcriptional regulator, XRE family [Lactobacillus jensenii 208-1] gi|297150173|gb|EFH30470.1| conserved hypothetical protein [Lactobacillus jensenii JV-V16] Length = 277 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 1/83 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +++ R L +SQ ++ + +T K E+G++ + A L I + I Sbjct: 1 MEIGAALKVTRKKLNLSQSEMAGNI-LTKSYYSKIERGIHEINAQDLIDILNLHGIRIQD 59 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 FF+ + + + + Sbjct: 60 FFEEFNFEKNTFGKSNFDHLHRL 82 >gi|226361968|ref|YP_002779746.1| Xre family DNA-binding protein [Rhodococcus opacus B4] gi|226240453|dbj|BAH50801.1| putative Xre family DNA-binding protein [Rhodococcus opacus B4] Length = 221 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 33/79 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +++R R G+S + +GI+ + K E S L ++ L+ P Sbjct: 32 DLEKVIARQVRALRKASGLSVGDMAAKVGISKAMLSKIENSQTSCSLSTLARLAAGLDVP 91 Query: 70 ISFFFDVSPTVCSDISSEE 88 ++ F + T + E Sbjct: 92 VTSLFRGADTARDAVYVEA 110 >gi|291087268|ref|ZP_06571878.1| putative toxin-antitoxin system, toxin component [Clostridium sp. M62/1] gi|291075626|gb|EFE12990.1| putative toxin-antitoxin system, toxin component [Clostridium sp. M62/1] Length = 96 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 1/86 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 GKR+ R G++QE+L LG+ + Q V + E G L +S +L Sbjct: 6 KEFGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLLIELSCILHVSTD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFIST 97 + S ++ ++ +++ +ST Sbjct: 66 YLLMGSEPSKEEVKNDLLSIISELST 91 >gi|210614614|ref|ZP_03290233.1| hypothetical protein CLONEX_02447 [Clostridium nexile DSM 1787] gi|210150661|gb|EEA81670.1| hypothetical protein CLONEX_02447 [Clostridium nexile DSM 1787] gi|295108107|emb|CBL22060.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 74 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R MSQ++L + +G++ Q + + E+ I++V + I FD Sbjct: 10 SKIHIYRATKRMSQQELADLVGVSRQTIIQLERNRYNPSMLLAYSIAKVFDVAIEDLFDF 69 Query: 77 SPTVC 81 Sbjct: 70 EEAQK 74 >gi|15678686|ref|NP_275801.1| epoxidase [Methanothermobacter thermautotrophicus str. Delta H] gi|2621742|gb|AAB85164.1| epoxidase [Methanothermobacter thermautotrophicus str. Delta H] Length = 190 Score = 42.5 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+RI+ R ++ ++L E G+ + ++K E+G + L IS L + Sbjct: 6 VGERIKQLRDNQNITVDELAERSGVNAELIKKIEEGDIIPSLTPLIKISRTLGVRLGTLL 65 Query: 75 DV 76 D Sbjct: 66 DD 67 >gi|332361261|gb|EGJ39065.1| Cro/CI family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 72 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KR+R R ++Q+++ E L T K E+G + A L +S + I + + Sbjct: 3 KRLRDLREDRDLTQKQVAEYLSFTHSAYAKIERGERILSAEILIKLSNLYSVSIDYLLGL 62 Query: 77 SP 78 S Sbjct: 63 SD 64 >gi|323519078|gb|ADX93459.1| hypothetical protein ABTW07_3036 [Acinetobacter baumannii TCDC-AB0715] Length = 219 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 2/82 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V R + R L +SQE LG + ++ V+++E G + + I++ Sbjct: 4 FVSDRFKSERKRLNLSQEGLGNLIEVSESTVKRWENGASIPS--DKLILCAQHGFDITYV 61 Query: 74 FDVSPTVCSDISSEENNVMDFI 95 V S++ +F Sbjct: 62 LLGDKNVEETSKSDDLFCGEFA 83 >gi|298383894|ref|ZP_06993455.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] gi|298263498|gb|EFI06361.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides sp. 1_1_14] Length = 102 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R++ R+ GM+QE+L +G + + E G + S L I + L ISF Sbjct: 42 IGERLKAERLKAGMTQEQLAAKIGTKKSYISRIENGHADIQLSTLFKIFQGLGRKISF 99 >gi|229827170|ref|ZP_04453239.1| hypothetical protein GCWU000182_02555 [Abiotrophia defectiva ATCC 49176] gi|229788788|gb|EEP24902.1| hypothetical protein GCWU000182_02555 [Abiotrophia defectiva ATCC 49176] Length = 86 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 R++ RR LG +Q ++ E + + V EKG +++ L + F+ Sbjct: 27 RLKERRTSLGFTQRQVAEGTEMNVRTVINIEKGKTIPNLLYAMKLAKFLGVRVEEVFE 84 >gi|169829011|ref|YP_001699169.1| hypothetical protein Bsph_3551 [Lysinibacillus sphaericus C3-41] gi|168993499|gb|ACA41039.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 68 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 RIR R ++QE L + +G++ Q + E G +IS+ Sbjct: 3 NRIRELRKSRKITQEDLSKLVGVSRQSIIAIESGKFNPSLELAYNISKAFNCT 55 >gi|163747656|ref|ZP_02155002.1| transcriptional regulator, XRE family protein [Oceanibulbus indolifex HEL-45] gi|161379075|gb|EDQ03498.1| transcriptional regulator, XRE family protein [Oceanibulbus indolifex HEL-45] Length = 96 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 32/80 (40%), Gaps = 3/80 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK IR+ R GM+ + L + I+ + EKG + ++ ++ FD Sbjct: 5 GKLIRVARTERGMTAQDLADRANISRTTLYNIEKGAPGPEIGTVFEVAALVGVR---LFD 61 Query: 76 VSPTVCSDISSEENNVMDFI 95 + + ++ + + + Sbjct: 62 ADDSTLAMHNARLDEKLTLL 81 >gi|154502693|ref|ZP_02039753.1| hypothetical protein RUMGNA_00506 [Ruminococcus gnavus ATCC 29149] gi|153796576|gb|EDN78996.1| hypothetical protein RUMGNA_00506 [Ruminococcus gnavus ATCC 29149] Length = 78 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGIT-----FQQVQKYEKGVNRVGASRLQHISEVL 66 D+++GK I+ R ++Q+++ L + K E + S L ++++ Sbjct: 7 DMDIGKNIQTIRYANKLTQDQVIAKLNLMGISMSKSTYAKLETNRMNIKVSELVALAKIF 66 Query: 67 ESPISFFFDV 76 + I+ FF Sbjct: 67 HTDINAFFSG 76 >gi|149924176|ref|ZP_01912553.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] gi|149814977|gb|EDM74537.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1] Length = 141 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 27/62 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R ++ + + ++ + + E+ + S L I+ L+ IS F Sbjct: 79 IGKRIREFRRARELTLKHMSRRTNLSVSLLSQIERAESSASVSSLYKIANALDVRISELF 138 Query: 75 DV 76 Sbjct: 139 GD 140 >gi|145298596|ref|YP_001141437.1| phage repressor [Aeromonas salmonicida subsp. salmonicida A449] gi|142851368|gb|ABO89689.1| phage repressor [Aeromonas salmonicida subsp. salmonicida A449] Length = 227 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + RI RR L +S+ L + +G++ V K+E G+N+ L ++ L + + Sbjct: 1 MTISDRIFSRRTALNLSKTALAKAIGVSDVSVGKWESGLNQPKGRYLNDLAAALGVTVDW 60 Query: 73 FFDVSPTVCSDISS 86 S Sbjct: 61 LLAGSGDGPEQPIP 74 >gi|163943401|ref|YP_001642631.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|228925002|ref|ZP_04088132.1| Transcriptional regulator,Cro/CI [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|163865598|gb|ABY46656.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228834665|gb|EEM80174.1| Transcriptional regulator,Cro/CI [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 66 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R G +Q+ LGE +G + Q + E+ I++ P+ F+ Sbjct: 4 NRIVVCRAEKGWTQQDLGERVGASRQTIASMERNKYNPSLILAFKIAQAFGKPLEEVFEF 63 Query: 77 SPT 79 Sbjct: 64 KEE 66 >gi|330982136|gb|EGH80239.1| prophage PSPPH05, DNA-binding protein [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330985425|gb|EGH83528.1| prophage PSPPH05, DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 110 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 1/99 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++V + I+ R G+ E+ GI +KYE G + A ++ +++ Sbjct: 1 MSVAENIKKARENKGLKIEEAASICGIPLGTYRKYEAGSSLPTADPIRAMAKGFGVSTDE 60 Query: 73 -FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + + +V+ + ++ R + Sbjct: 61 ILMEPDERSVKAELRKLFSVVATLPECQQAEVKRAIKGL 99 >gi|308229525|gb|ADO24176.1| C.AflIIIP [Anabaena flos-aquae CCAP 1403/13F] Length = 78 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 28/69 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R L +SQ++L E + + E+G + + +++ L+ FD Sbjct: 9 GIRVRYFRKSLKLSQDELAEKSDLHRTYIGAVERGERNISLMNIFRLADALQVTAKDLFD 68 Query: 76 VSPTVCSDI 84 + Sbjct: 69 NPIENGENT 77 >gi|300710183|ref|YP_003735997.1| hypothetical protein HacjB3_04070 [Halalkalicoccus jeotgali B3] gi|299123866|gb|ADJ14205.1| hypothetical protein HacjB3_04070 [Halalkalicoccus jeotgali B3] Length = 71 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +++RR ++Q L E + ++ Q + E G H++E + I F+ Sbjct: 5 LKVRRARHELTQSDLAEAVDVSRQTISAIEAGRYNPSLELAFHLAEYFDCSIEDIFE 61 >gi|294664868|ref|ZP_06730187.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605360|gb|EFF48692.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 461 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 10/134 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R G++Q +L L ++ + + E+ + + Q + L Sbjct: 11 QLGLRLQRLRQRHGLTQAELARRLELSPSYLNQIERNQRPLTLAIQQRLKTALGD----- 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVRSIVSSE 130 + + D + +D G L ++ +V Q +++L R+ Sbjct: 66 --LDGLLDLDDPAALVEPLDESLRSLGHTLLPAELRALTGNLPQVAQALLDLHRAHQHLL 123 Query: 131 KKYRTIEEECMVEQ 144 ++ +E + VE Sbjct: 124 ERNAALELQIGVEH 137 >gi|262282100|ref|ZP_06059869.1| DNA-binding protein [Streptococcus sp. 2_1_36FAA] gi|262262554|gb|EEY81251.1| DNA-binding protein [Streptococcus sp. 2_1_36FAA] Length = 70 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R+ M+Q L + +G+T Q + E G S I + L + F Sbjct: 12 KLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCIAICKCLNKTLDQLF 68 >gi|27818186|gb|AAO24822.1|AF333235_16 Orf9 [Clostridium difficile] Length = 119 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 34/106 (32%), Gaps = 1/106 (0%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D G I+ RM G++ E++G + I + + E L + Sbjct: 2 RKKEDKFDFRAFGLAIKEARMKRGLTCEQVGALIEIDPRYLTNIENKGQHPSIQVLYDLV 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 +L+ + F + + + T L L Sbjct: 62 SLLDVSVDESFLPHNDLTKSTRRLQVEKLLDNFTDKELSLIEALAS 107 >gi|24378683|ref|NP_720638.1| putative transcriptional regulator [Streptococcus mutans UA159] gi|290579667|ref|YP_003484059.1| putative transcriptional regulator [Streptococcus mutans NN2025] gi|24376546|gb|AAN57944.1|AE014868_6 putative transcriptional regulator [Streptococcus mutans UA159] gi|254996566|dbj|BAH87167.1| putative transcriptional regulator [Streptococcus mutans NN2025] Length = 64 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +SQ+ L + +G++ Q + EKG + I + L+ + F Sbjct: 5 RLKAARAGKDLSQQALADLVGVSRQTIAAVEKGDYNPTINLCIKICKALDKSLDELFWEE 64 >gi|331091961|ref|ZP_08340793.1| hypothetical protein HMPREF9477_01436 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402860|gb|EGG82427.1| hypothetical protein HMPREF9477_01436 [Lachnospiraceae bacterium 2_1_46FAA] Length = 133 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G RIR R SQE L E G++ + + E G + LQ I + L + Sbjct: 11 IILGNRIRECRKEREFSQEILAEKSGVSTNTISRIEGGQMAMSVGILQKIVKALGVDANT 70 Query: 73 FFDVSPT 79 VS Sbjct: 71 LLGVSTE 77 >gi|327467239|gb|EGF12743.1| transcriptional regulator [Streptococcus sanguinis SK330] Length = 71 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFWD 61 Query: 77 SPTVCSDISS 86 D Sbjct: 62 PQLTDEDSED 71 >gi|169346966|ref|ZP_02865914.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] gi|169297025|gb|EDS79149.1| DNA-binding protein [Clostridium perfringens C str. JGS1495] Length = 349 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 58/142 (40%), Gaps = 11/142 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ +R G++QE++ LG++ V K+EKG + L ++ +L+ ++ Sbjct: 1 MRINEIIKEKRNAQGLTQEQVAMYLGVSTPAVNKWEKGTCYPDITLLPALARLLKVDLNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN--RYFIQIDDVKVRQKIIELVRSI---- 126 + N + I+ DG + + +I + K+ V ++ Sbjct: 61 LLSFKEDLSEQEIGVFVNELVKIANNDGFHVAFEKAMDKIYEYPTCDKLTLTVSTVMQGS 120 Query: 127 -----VSSEKKYRTIEEECMVE 143 ++KY EE ++ Sbjct: 121 MYMFGADDKEKYEEQIEEFYIK 142 >gi|126698483|ref|YP_001087380.1| putative phage regulatory protein [Clostridium difficile 630] gi|115249920|emb|CAJ67740.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 110 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 36/105 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R G++Q +L + L + ++ E L SE+ + I + Sbjct: 4 NRLRELRKQKGLTQMELAKLLNCSLSKIAMLETDKRDPVKEDLLRFSEIFDVSIDYLLGK 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + + ++E + + +I D + I E Sbjct: 64 NNLDLNPQLNKEMEQALHKLYSLDEENRKAIEKIIDNAYYKIINE 108 >gi|114799924|ref|YP_759016.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] gi|114740098|gb|ABI78223.1| DNA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 384 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R+R R ++QE+ + +G++ + EKG R L ++ ++ Sbjct: 11 KELGERLRRARTRADVTQEQAAQIIGLSRPTLVAIEKGQRRPQPEELVALAAAYNVGVAE 70 Query: 73 FF 74 Sbjct: 71 LL 72 >gi|114770344|ref|ZP_01447882.1| transcriptional regulator, putative [alpha proteobacterium HTCC2255] gi|114549181|gb|EAU52064.1| transcriptional regulator, putative [alpha proteobacterium HTCC2255] Length = 432 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 26/75 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R L ++Q+ L + GI+ + E + L I+ L S Sbjct: 6 LGTRIRENRKALRLTQKDLAKVAGISASYLNLIEHNRRGIAGKTLNTIARALSVEPSELS 65 Query: 75 DVSPTVCSDISSEEN 89 D D Sbjct: 66 DGMNQALVDRLKSAA 80 >gi|108758488|ref|YP_635058.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108462368|gb|ABF87553.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 122 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 7/121 (5%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 ++ + + VGK R R LG++Q ++ + + + E+G A L+ +S V Sbjct: 7 RMDEQLGMMVGKAAREARARLGLTQVEVAALVDMHPMVYSRVERGKMVPSAGMLRRLSMV 66 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 L ++ + E P +L ++DDVK+ + ++ + R+ Sbjct: 67 LRISTDELLGLARPGKDERRELEKEP------PLLRRLVTLARELDDVKL-EALVTMARA 119 Query: 126 I 126 + Sbjct: 120 L 120 >gi|21222193|ref|NP_627972.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|256786717|ref|ZP_05525148.1| regulatory protein [Streptomyces lividans TK24] gi|289770612|ref|ZP_06529990.1| regulatory protein [Streptomyces lividans TK24] gi|10432486|emb|CAC10320.1| putative regulatory protein [Streptomyces coelicolor A3(2)] gi|289700811|gb|EFD68240.1| regulatory protein [Streptomyces lividans TK24] Length = 449 Score = 42.5 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 3/126 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R GM+Q +L E T + E G R L+H+++ L Sbjct: 10 IGRRVQRLRAERGMTQRQLAE-PAYTPAYISTLEAGRVRPSDEALRHLADRLGVGYEELV 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ--IDDVKVRQKIIELVRSIVSSEKK 132 P + +G + + + + + E +++ + Sbjct: 69 TGRPARLATDLRLRLTEAQRTLATEGAEQAAAQYTGLLAEAETYELAEERAAALLGLGEC 128 Query: 133 YRTIEE 138 E Sbjct: 129 AVETGE 134 >gi|313898507|ref|ZP_07832044.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956889|gb|EFR38520.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 71 Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I++ RM L MSQE+L +G T Q + E G I L + F Sbjct: 5 KIKMARMELNMSQEELAGKVGATRQTIGLIEAGRYNPTIKLCIKICIALHKHLDDLFWED 64 Query: 78 PTVCSDI 84 ++ Sbjct: 65 DYDKEEL 71 >gi|227535271|ref|ZP_03965320.1| hypothetical protein HMPREF0530_2557 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187155|gb|EEI67222.1| hypothetical protein HMPREF0530_2557 [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 192 Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 33/89 (37%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N V+ +G I+ R ++Q+ L +G Q + K E+GV + + Sbjct: 25 MRANMNKEKIVESKIGLHIKQLRKAQRITQKDLAAEIGTIEQTISKIERGVFTLSVETIM 84 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEEN 89 L + +P + I + + Sbjct: 85 QFCNALNVTPNELRIDNPRCKNGILIDSS 113 >gi|219669930|ref|YP_002460365.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219540190|gb|ACL21929.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 81 Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN--RVGASRLQHISEVLESPI 70 I +G RI R + M+Q++L E +GIT + + + E + L I+++ P Sbjct: 13 IQIGLRIAYYRKLNEMTQDQLAERIGITSKYLSQVETPSCVQPISLKTLFAIADLFHVPP 72 Query: 71 SFFFDVSPT 79 F + Sbjct: 73 HKFLEFDKD 81 >gi|210615547|ref|ZP_03290645.1| hypothetical protein CLONEX_02863 [Clostridium nexile DSM 1787] gi|210150214|gb|EEA81223.1| hypothetical protein CLONEX_02863 [Clostridium nexile DSM 1787] Length = 74 Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R MSQ++L + +G++ Q + + E+ I++V + I FD Sbjct: 10 SKIHIYRATKRMSQQELADLVGVSRQTIIQLERNRYNPSMLLAYSIAKVFDVAIEDLFDF 69 Query: 77 SPTVC 81 Sbjct: 70 EEAEK 74 >gi|169349697|ref|ZP_02866635.1| hypothetical protein CLOSPI_00435 [Clostridium spiroforme DSM 1552] gi|169293772|gb|EDS75905.1| hypothetical protein CLOSPI_00435 [Clostridium spiroforme DSM 1552] Length = 341 Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 35/67 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ RR+ LG +QE+LG L ++ V ++EKG + L ++ +L++ ++ Sbjct: 1 MKINEIIKERRLELGYTQEQLGALLNLSSSAVNRWEKGNCYPDITILPILARILKTDLNT 60 Query: 73 FFDVSPT 79 Sbjct: 61 LLSFKED 67 >gi|162148576|ref|YP_001603037.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787153|emb|CAP56745.1| putative transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 77 Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 26/68 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R G+SQE L E +G+ + E G L H S+ L + D Sbjct: 8 GANVRRLRRAAGLSQEVLAERMGVDRAYISWIETGRQNATLLSLWHASQALNVRPAALLD 67 Query: 76 VSPTVCSD 83 + D Sbjct: 68 ENQVPADD 75 >gi|7523594|gb|AAF63096.1|AF158601_24 putative DNA binding protein [Streptococcus phage SFi18] Length = 166 Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ L R +++ +L E +G+T + +E G + + S + ++E + + Sbjct: 2 NRLYLLRESRKITRVELAEKIGVTKLTILNWEHGTHEIKGSNAKKLAEYFNVSVPYLL-G 60 Query: 77 SPTVCSDISSEENNV 91 +D+ ++ N Sbjct: 61 YDNTFTDLIAKINEW 75 >gi|78186555|ref|YP_374598.1| XRE family transcriptional regulator [Chlorobium luteolum DSM 273] gi|78166457|gb|ABB23555.1| transcriptional regulator, XRE family [Chlorobium luteolum DSM 273] Length = 85 Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 27/67 (40%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + V++ +G +IR R +SQ L + G+ + E+G + ++ L Sbjct: 1 MKKQVEMCLGDQIRSERYRKNLSQLSLSQQCGLHRSYIGLIERGEKNITVINCMKVANAL 60 Query: 67 ESPISFF 73 +S Sbjct: 61 GISLSEL 67 >gi|89893310|ref|YP_516797.1| hypothetical protein DSY0564 [Desulfitobacterium hafniense Y51] gi|219666581|ref|YP_002457016.1| XRE family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|89332758|dbj|BAE82353.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219536841|gb|ACL18580.1| transcriptional regulator, XRE family [Desulfitobacterium hafniense DCB-2] Length = 70 Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 29/65 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R ++Q+++ + L KYE+G V + + +++ ++ I + ++ Sbjct: 4 RIRDIREDHDLTQQQVAKYLRCDQSLYSKYERGERDVPLNVMIKLAKFYKTSIDYLVGLT 63 Query: 78 PTVCS 82 Sbjct: 64 ENKRP 68 >gi|323345085|ref|ZP_08085309.1| transcriptional regulator [Prevotella oralis ATCC 33269] gi|323094355|gb|EFZ36932.1| transcriptional regulator [Prevotella oralis ATCC 33269] Length = 85 Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 29/66 (43%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V + G+ +R R + +SQE+L G+ + E+ V ++ I++ L Sbjct: 20 DVLVRFGQIVRRYREDMNISQEELAFRAGLHRTYIGMIERAEKNVTLCNIKKIADALGID 79 Query: 70 ISFFFD 75 I FD Sbjct: 80 IKDLFD 85 >gi|266620773|ref|ZP_06113708.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288867593|gb|EFC99891.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 113 Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 1/95 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-F 73 V KRIR RR LGMS ++ +G E+G + L ++ L+ + + Sbjct: 8 VAKRIRQRRKELGMSSAEVAGKIGRAVHYYGDIERGTCGMSIETLLDLAHYLDLSVDYIL 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 F + D ++ + Sbjct: 68 FGQAGEERIDNPDLAYRILKKYDEKTQKEAIEMMK 102 >gi|227821794|ref|YP_002825764.1| hypothetical protein NGR_c12290 [Sinorhizobium fredii NGR234] gi|227340793|gb|ACP25011.1| hypothetical protein NGR_c12290 [Sinorhizobium fredii NGR234] Length = 131 Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 9/120 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R +S ++L +G+ + + +E+ +RL ++ VL ++ Sbjct: 21 LGGRIWRARDAAKLSIKELAVRVGVRGETISAWERDRAEPRTNRLFMLASVLGVTPAWLI 80 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + S + + + L+L + + + I L + E+ R Sbjct: 81 TGIGRAPDEGPSHSHT-----ALREQLELVKRLH----EQTGEAIAALESELERIEENIR 131 >gi|87198232|ref|YP_495489.1| XRE family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87133913|gb|ABD24655.1| transcriptional regulator, XRE family [Novosphingobium aromaticivorans DSM 12444] Length = 63 Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R SQ L E L ++ Q V E G I+++ I F+ Sbjct: 3 NRLKVLRAERNWSQADLAERLEVSRQSVNAIETGKYDPSLPLAFRIADLFGLAIEEIFER 62 Query: 77 S 77 Sbjct: 63 D 63 >gi|37526812|ref|NP_930156.1| hypothetical protein plu2922 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786244|emb|CAE15296.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 212 Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R++ RR+ +G++Q +L + +G Q +++ EKG + L ++ L+ +S+ Sbjct: 1 MTIAERVKTRRIEMGLTQTELADLIGTKQQSIEQLEKGKTK-RPRFLPELAVALQCSVSY 59 Query: 73 FFDVSPTVCSDIS 85 + +I Sbjct: 60 LLYGTEDKKEEIE 72 >gi|21218919|ref|NP_624698.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|6066657|emb|CAB58317.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 200 Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 34/82 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D V KRIR R+ G S E+L ++ + + E G R+ +L ++ L++ Sbjct: 10 DLDSLVRKRIRALRVAQGWSLEELAGRARLSQSSLSRIENGRRRLALDQLVTLARALDTT 69 Query: 70 ISFFFDVSPTVCSDISSEENNV 91 + + + ++ Sbjct: 70 LDQLVETADEDVITSPMIDSAH 91 >gi|148547808|ref|YP_001267910.1| XRE family transcriptional regulator [Pseudomonas putida F1] gi|148511866|gb|ABQ78726.1| transcriptional regulator, XRE family [Pseudomonas putida F1] Length = 180 Score = 42.1 bits (97), Expect = 0.022, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R LGM+ E L E G+T + K E+G+N + ++ L + F Sbjct: 4 RLKLLRKKLGMTLEMLAEKTGMTKSYLSKVERGLNTPSIAAALKLARALNVNVEELFAEE 63 Query: 78 PTVCS 82 T S Sbjct: 64 QTGQS 68 >gi|330468378|ref|YP_004406121.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811349|gb|AEB45521.1| XRE family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 441 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 7/108 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G+R++ RR L MSQ +L +T + E G + ++ +L+ + Sbjct: 20 EFGQRLKARRTALRMSQRELAGDF-VTPSYISLLEAGSRVPTLDVVVYLGRMLDCSLEEL 78 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 DV + ++ L R ++ D ++ +E Sbjct: 79 LDVDVAPLLPSEASRRPIV------FEQVLARSASEVGDHAQARRFLE 120 >gi|323705548|ref|ZP_08117122.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535025|gb|EGB24802.1| helix-turn-helix domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 438 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 6/114 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GK+IR R L + Q + + + EKG L I++ L P+ + Sbjct: 4 VKLGKKIRDERKKLLLKQGDISGD-EFSKGYISLIEKGKINPSLKALDFIAKKLNKPLVY 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 F D +++ E N + + + +D + + I +++ Sbjct: 63 FLDDDYKDKAELIDEINTYKKVLKS-----VIEGRKSLDSGNLTEAISYYQKAL 111 >gi|312174394|emb|CBX82641.1| HTH-type transcriptional regulator dicA Repressor protein of division inhibition gene dicA [Erwinia amylovora ATCC BAA-2158] Length = 141 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKR+ R GM+Q ++ L ++ Q VQ +E G R+ S L ++++L + Sbjct: 28 ALGKRMTGYRKACGMTQAQMALALDVSQQAVQSWEAGRRRIQISVLPAVAKLLSVSLEGL 87 Query: 74 FDVSPTV 80 Sbjct: 88 LGEEADR 94 >gi|312977312|ref|ZP_07789060.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] gi|310895743|gb|EFQ44809.1| toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus crispatus CTV-05] Length = 69 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 30/56 (53%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R ++QE+L E +G+ + + +YE+G + L +++VL+ + Sbjct: 10 RLKRTRKNKNLTQEQLAEAVGLGVRTIGRYEQGSSFPNKRVLHELAKVLKVKTDWL 65 >gi|310829026|ref|YP_003961383.1| transcriptional regulator [Eubacterium limosum KIST612] gi|308740760|gb|ADO38420.1| transcriptional regulator [Eubacterium limosum KIST612] Length = 232 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 48/116 (41%), Gaps = 3/116 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ +G ++R+ R + +S +++ +G + + KYE G + S L I+ L Sbjct: 4 DSLNAQIGAQVRMYRKMAKISIDEMARTIGKSRATISKYETGAIGMDVSTLFEIASTLNI 63 Query: 69 PISFFFD---VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 +S D T+ S N ++ + +I++ + + +I Sbjct: 64 GVSHLLDIPKEDKTMEVTQSQLGNIDHFYLYQQSRHKNFCSYIRLGEERANGQIYA 119 >gi|326775585|ref|ZP_08234850.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] gi|326655918|gb|EGE40764.1| helix-turn-helix domain protein [Streptomyces cf. griseus XylebKG-1] Length = 137 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 1/73 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISFFFDV 76 ++L R G +Q +L +G F QV + G R+ L ++ Sbjct: 14 NVKLLRTRRGWTQNQLAAEMGQKFSQVVATTEGGKRRITVDDLVDFAKAFGVTPEQMMSD 73 Query: 77 SPTVCSDISSEEN 89 P + E + Sbjct: 74 DPEAGGNQVYEVS 86 >gi|268611718|ref|ZP_06145445.1| hypothetical protein RflaF_19698 [Ruminococcus flavefaciens FD-1] Length = 123 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 10/110 (9%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + KK + + RR LG++QE L + + ++ Q V K+EK L Sbjct: 1 MTTKKSFH-------SNLAKRRKELGLTQEMLAQKINVSSQAVSKWEKSSY-PDPELLPD 52 Query: 62 ISEVLESPISFFF-DVSPTVCSDISSEENNVMDFIS-TPDGLQLNRYFIQ 109 I++ L + I F + S DI ++ + +S + + F Sbjct: 53 IAKALNTSIDSLFGNRSGDAEIDIFQLVHDRIQSLSPDKRSKFMIQLFYS 102 >gi|228940885|ref|ZP_04103444.1| hypothetical protein bthur0008_35250 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973814|ref|ZP_04134390.1| hypothetical protein bthur0003_35690 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980403|ref|ZP_04140713.1| hypothetical protein bthur0002_35710 [Bacillus thuringiensis Bt407] gi|228779223|gb|EEM27480.1| hypothetical protein bthur0002_35710 [Bacillus thuringiensis Bt407] gi|228785839|gb|EEM33842.1| hypothetical protein bthur0003_35690 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818721|gb|EEM64787.1| hypothetical protein bthur0008_35250 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941562|gb|AEA17458.1| ans operon repressor protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 145 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I R +SQ +L + LG + ++ YE+G L+ I++ E + Sbjct: 1 MLGKKISELRKKQKLSQYELADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60 Query: 74 FDVSPTVC 81 D + T Sbjct: 61 LDRTQTKE 68 >gi|239814987|ref|YP_002943897.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801564|gb|ACS18631.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 190 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 31/68 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++R RM +S +L + GI+ + + E+G+ L+ +++ L P S FF Sbjct: 9 IGAQVRALRMAAEVSGGELAKTSGISASMLSRIERGLVSPSVETLERLAQGLHVPTSRFF 68 Query: 75 DVSPTVCS 82 Sbjct: 69 SDQARRTD 76 >gi|199597381|ref|ZP_03210811.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|258509213|ref|YP_003171964.1| XRE family transcriptional regulator [Lactobacillus rhamnosus GG] gi|258540398|ref|YP_003174897.1| transcriptional regulator xre family [Lactobacillus rhamnosus Lc 705] gi|199591641|gb|EDY99717.1| Transcriptional regulator, xre family protein [Lactobacillus rhamnosus HN001] gi|257149140|emb|CAR88113.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus GG] gi|257152074|emb|CAR91046.1| Transcriptional regulator, xre family [Lactobacillus rhamnosus Lc 705] gi|259650498|dbj|BAI42660.1| transcriptional regulator [Lactobacillus rhamnosus GG] Length = 129 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 28/90 (31%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R G S ++ + + K+E ++ ++E ++ Sbjct: 6 VGSVLRQIRKSRGESIVEVAKATHTSPASFTKWENDQTIPSERSIRKLAEYYQTDPLELL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 V+ E+ ST L Sbjct: 66 GVAYPDKYAKQQEQEKAAAEGSTIRIEDLI 95 >gi|117924798|ref|YP_865415.1| phage lambda repressor protein. serine peptidase. MEROPS family S24 [Magnetococcus sp. MC-1] gi|117608554|gb|ABK44009.1| phage repressor protein, Serine peptidase, MEROPS family S24 [Magnetococcus sp. MC-1] Length = 220 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 1/79 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RIR R G +Q++L + + I+ + K E G +R + R I+ + Sbjct: 6 RIRTAREYAGFTQKELADRVDISQTAIHKLECGRSR-SSRRTVAIALACGVNPIWLETGE 64 Query: 78 PTVCSDISSEENNVMDFIS 96 + S + D + Sbjct: 65 GDMILGGSRGAHQASDIGA 83 >gi|328554991|gb|AEB25483.1| transcription regulator protein [Bacillus amyloliquefaciens TA208] gi|328913346|gb|AEB64942.1| BamHI control element [Bacillus amyloliquefaciens LL3] Length = 81 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%) Query: 7 IPNPVDINVGKRIRLRRMIL-GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + N + + G+++R R+ MSQEKL + + E+G V ++ IS+ Sbjct: 1 MTNNIRLLFGQKVRQIRLSKSNMSQEKLAFECDLHRTYISDIERGTRNVSLDNIEKISKA 60 Query: 66 LESPISFFFD 75 L D Sbjct: 61 LGVQPKDLLD 70 >gi|325478374|gb|EGC81489.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 143 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 38/87 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R++ ++Q++L G+T ++ YE G +LQ IS+ L+ IS + Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISKALDCDISALIN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 P +I + + Sbjct: 64 HEPNSIFEIMHIIFDYEKDMKFRPLAD 90 >gi|302339025|ref|YP_003804231.1| XRE family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301636210|gb|ADK81637.1| transcriptional regulator, XRE family [Spirochaeta smaragdinae DSM 11293] Length = 113 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 45/125 (36%), Gaps = 19/125 (15%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ +QE + G++F +K+ A + I++VL++ + + Sbjct: 5 ERLKTLIKEQKTTQEWVANKTGVSFGTFRKWMSRKTMPNADQAVEIADVLDTTVEYLVKG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS--SEKKYR 134 + + + ++DD + +E V+ + + +K Sbjct: 65 KSSDTWQPP------------RRYADIVKLLEELDDSE-----LEAVKVLAEGYASRKRN 107 Query: 135 TIEEE 139 ++E Sbjct: 108 KPQKE 112 >gi|296327851|ref|ZP_06870387.1| DNA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154985|gb|EFG95766.1| DNA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 209 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 38/103 (36%), Gaps = 2/103 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I V + I+ R +S L + ++ + + E+G S L I+ ++ Sbjct: 31 LNILVSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVSF 90 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + + ++ + + GL+ F I++ Sbjct: 91 NTLI--AQPKLPYKVTKLAEIEPILDMNGGLKNYSLFSDIENN 131 >gi|238063738|ref|ZP_04608447.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237885549|gb|EEP74377.1| XRE family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 403 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 1/92 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLESPISFF 73 VG+R+ R+ M+Q++ + LG + V K E+GV R+ S L+ ++E L + Sbjct: 17 VGRRVAHWRVRRNMTQQQFADRLGKSKSWVDKVERGVRRLERVSNLREVAEALRIDLEML 76 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 P S+ + ++ + R Sbjct: 77 LADRPGPADPASAGVEGIRAALARYHVVAPAR 108 >gi|256423763|ref|YP_003124416.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038671|gb|ACU62215.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 113 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 35/87 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R +SQ+++ + +G+ + +YE+ + +I+ LE + + Sbjct: 7 GKRLTEVRKDKKLSQDEIAKKVGVHGAVIGRYERDEVKPSIEMAANIATALEVSLDYLVG 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 + + + + +S D Sbjct: 67 NTDLLLDQTILDRIMDIQKLSDQDKAD 93 >gi|227499743|ref|ZP_03929843.1| helix-turn-helix motif:protein of hypothetical function DUF955 [Anaerococcus tetradius ATCC 35098] gi|227218210|gb|EEI83473.1| helix-turn-helix motif:protein of hypothetical function DUF955 [Anaerococcus tetradius ATCC 35098] Length = 388 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 37/90 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R M+ +LG+ + ++ Q + YE + +S+VL+ P ++F Sbjct: 7 GEKLKTARTYRSMTLAELGKLIDLSKQTLSLYENNKGNPDFETIIKLSKVLKFPTNYFTQ 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNR 105 S S+ + ++ R Sbjct: 67 ESNNNIKSGSTYFRALSTTTKKSRASEITR 96 >gi|300775709|ref|ZP_07085570.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300505736|gb|EFK36873.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 134 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 55/130 (42%), Gaps = 3/130 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 I+ G+ ++ R +LG+ QE L + Q+ + + L+ ISEVL+ P+ Sbjct: 5 IHQGRNVKRFREMLGIKQEALALDLGDDWNQKKISLLEQRETIENQLLEKISEVLKIPVE 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 F + ++ S + + +Q +I V++ ++ I L ++ + Sbjct: 65 AFQNFDEEQAVNLISCTFSDNAMFNNRIEVQNINPIDKI--VQLHEEKIALYERMLKEKD 122 Query: 132 KYRTIEEECM 141 + + E+ + Sbjct: 123 EMMSRLEKLL 132 >gi|225374970|ref|ZP_03752191.1| hypothetical protein ROSEINA2194_00593 [Roseburia inulinivorans DSM 16841] gi|225213184|gb|EEG95538.1| hypothetical protein ROSEINA2194_00593 [Roseburia inulinivorans DSM 16841] Length = 85 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 24/62 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R MSQE LG + T Q V K EK + L ++ + + Sbjct: 4 NRIRELRRSHNMSQEALGTIINTTQQAVSKMEKDTCAISTDLLISMARYFNVTTDYILGL 63 Query: 77 SP 78 S Sbjct: 64 SD 65 >gi|225018752|ref|ZP_03707944.1| hypothetical protein CLOSTMETH_02702 [Clostridium methylpentosum DSM 5476] gi|224948480|gb|EEG29689.1| hypothetical protein CLOSTMETH_02702 [Clostridium methylpentosum DSM 5476] Length = 97 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 28/81 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+R R+ ++Q ++ L ++ + YE + L +S + + Sbjct: 6 GCRLRELRLNKKLTQTQVARRLNLSKTTISGYENNIKTPSLDVLTQLSILYGVSSDYILG 65 Query: 76 VSPTVCSDISSEENNVMDFIS 96 + I + + + Sbjct: 66 LENRDMLLIDGLTDKQREILD 86 >gi|168183094|ref|ZP_02617758.1| DNA-binding protein [Clostridium botulinum Bf] gi|182673878|gb|EDT85839.1| DNA-binding protein [Clostridium botulinum Bf] Length = 177 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 35/86 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G++ ++L E ++ + E+ +N S LQ I EVL + Sbjct: 1 MQLGEKIKYYRKKKGLTIKELSELTNLSIGFISNLERDLNSPSVSNLQQICEVLGINLME 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 + + + + + Sbjct: 61 ILKSTEDKEYIVCKDSRSEIFSTDDK 86 >gi|108758784|ref|YP_630139.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108462664|gb|ABF87849.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 115 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 42/111 (37%), Gaps = 3/111 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G RL R + ++Q ++ E +G+ + E+G+ L+ + L Sbjct: 8 HLGSIARLAREQMSLTQVQVAERVGLASAVYSRIERGLMIPSVETLKKLCIELMVSPEDL 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 ++ + S + + D ++ + L R + + EL R Sbjct: 68 MGLTESPSSGSPTRPD---DDVTLRRLIFLARKLDASKLDALVRITTELAR 115 >gi|126699926|ref|YP_001088823.1| putative transcriptional regulator [Clostridium difficile 630] gi|254975889|ref|ZP_05272361.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255093277|ref|ZP_05322755.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255315019|ref|ZP_05356602.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255517694|ref|ZP_05385370.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255650804|ref|ZP_05397706.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|255656283|ref|ZP_05401692.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|260683886|ref|YP_003215171.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260687546|ref|YP_003218680.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296450276|ref|ZP_06892037.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296878691|ref|ZP_06902696.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|306520704|ref|ZP_07407051.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|115251363|emb|CAJ69195.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260210049|emb|CBA64125.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260213563|emb|CBE05326.1| putative transcriptional regulator [Clostridium difficile R20291] gi|296261039|gb|EFH07873.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296430498|gb|EFH16340.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] Length = 66 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 29/57 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R + ++QE+L E +G+ + + + E G IS+++++PI F Sbjct: 7 NLKKYRQLKELTQEQLAEKVGVRRETIMRLEAGKYNPSLKLAIDISKIVDTPIDELF 63 >gi|52140306|ref|YP_086523.1| transcriptional regulator, DNA-binding protein [Bacillus cereus E33L] gi|196039476|ref|ZP_03106781.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|301056723|ref|YP_003794934.1| DNA-binding transcriptional regulator [Bacillus anthracis CI] gi|51973775|gb|AAU15325.1| transcriptional regulator, DNA-binding protein [Bacillus cereus E33L] gi|196029636|gb|EDX68238.1| DNA-binding protein [Bacillus cereus NVH0597-99] gi|300378892|gb|ADK07796.1| transcriptional regulator, DNA-binding protein [Bacillus cereus biovar anthracis str. CI] gi|324329202|gb|ADY24462.1| DNA-binding transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 63 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 2 NNVKQYRKSEGLSQLELAKRVKVARQTINLIENNKYNPSLALCIELAKALKTDLNSLFWE 61 Query: 77 SP 78 Sbjct: 62 GD 63 >gi|150015531|ref|YP_001307785.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149901996|gb|ABR32829.1| putative transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 436 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 50/118 (42%), Gaps = 8/118 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L + IT Q+ E G + L+++++ L + + + Sbjct: 6 LGEKIKRRRKQLNMTLKDLAKD-RITPGQISLVESGRSNPSVDLLEYLADALNTNVEYLM 64 Query: 75 DVSPTVCSDIS-------SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + + IS D+ + Y+ + +++ R+ +I + + Sbjct: 65 ESEESQAEKISLYYEQVGESCILQGDYEKGQRYIDNALYYCEKYNLEYRKAMIYFITA 122 >gi|331701909|ref|YP_004398868.1| phage repressor like XRE family transcriptional regulator [Lactobacillus buchneri NRRL B-30929] gi|329129252|gb|AEB73805.1| phage repressor like transcriptional regulator, XRE family [Lactobacillus buchneri NRRL B-30929] Length = 237 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 46/106 (43%), Gaps = 1/106 (0%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFFDV 76 +R RR L ++ E++G+ +G+ ++K+E G + ++ +S+ L+ D Sbjct: 4 NLRNRRKELNLTLEEVGKMVGVGKSTIRKWETGYIENMKRDKIIALSKALKVSPMDIIDP 63 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + + + + + + ++ Y D + +K+ + Sbjct: 64 NKEISNPMIDKIEEISIQLHPSRQEKVYNYASDQLDEQNNEKVTSM 109 >gi|322390117|ref|ZP_08063652.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] gi|321143244|gb|EFX38687.1| transcriptional regulator [Streptococcus parasanguinis ATCC 903] Length = 77 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 2 VGNKKIPNPVDINVGK--RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 + NK I + +V K ++++ R+ M+Q L + +G+T Q + E G S Sbjct: 1 MYNKAIKTRKENHVAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLC 60 Query: 60 QHISEVLESPISFFF 74 I + L+ + F Sbjct: 61 LAICKTLDKTLDQLF 75 >gi|320327981|gb|EFW83986.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330875480|gb|EGH09629.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 189 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 2/109 (1%) Query: 2 VGNKKIPNP-VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + + P P V +V + +R R +SQ L E G++ + + E G V + L Sbjct: 1 MHKENSPRPAVLQHVSQNVRRLRNCADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLD 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++E LE S +P E IS + L R + Sbjct: 61 RVAEALEVAFSDLIQ-APENRDYSRINELAWAGTISGSKAVLLARAIAR 108 >gi|304390894|ref|ZP_07372846.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325777|gb|EFL93023.1| XRE family transcriptional regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 112 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R G+SQ +L + +G T Q + E + + I + L + F Sbjct: 53 ERMRAARKEAGLSQAELAKDVGATRQTICSIEASNYNPSLNLCKLICKKLGKTLDELFWD 112 >gi|262373390|ref|ZP_06066669.1| RtrR protein [Acinetobacter junii SH205] gi|262313415|gb|EEY94500.1| RtrR protein [Acinetobacter junii SH205] Length = 70 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G IR R+ ++QEKL I V + E+G + +L I+++L+ Sbjct: 2 SDLAQKIGHAIRNCRIEQKITQEKLALLCNIDRSYVGRIERGEVNITVLKLYEIAQILKV 61 Query: 69 PISFFF 74 Sbjct: 62 APHDLL 67 >gi|257867332|ref|ZP_05646985.1| predicted protein [Enterococcus casseliflavus EC30] gi|257801388|gb|EEV30318.1| predicted protein [Enterococcus casseliflavus EC30] Length = 147 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 24/64 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R + R G+S +++ + L +++ YE G L H + + + + + Sbjct: 80 RFKFLREERGLSPKEVCQHLDVSYPDYTLYEAGDRLPDVLTLLHAASLYNVSVDYLLGQT 139 Query: 78 PTVC 81 Sbjct: 140 ERPE 143 >gi|291301572|ref|YP_003512850.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570792|gb|ADD43757.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 207 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 36/111 (32%), Gaps = 7/111 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +R R G+S + GI + + E G + +S L P+S Sbjct: 8 RALAANLRAIREAAGLSLSAVARESGIAKGTLSQLESGTGNPTIETVFSLSNTLGVPVSS 67 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + + + + + + L R ++D +IEL Sbjct: 68 LLTERTDPDVVLVRSRDLE---VLSSNAVDL-RMLRRMDTA---GAVIELY 111 >gi|228964769|ref|ZP_04125876.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|228795019|gb|EEM42518.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] Length = 167 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R ++Q L +T + + E G LQ+I+E L SF Sbjct: 4 LGAKIKTLRKEKKLTQTDL-AGSVLTKSMLSQIENGKATPSMKTLQYIAEKLGCETSFLL 62 Query: 75 DVS 77 + Sbjct: 63 EED 65 >gi|229015775|ref|ZP_04172754.1| hypothetical protein bcere0030_3620 [Bacillus cereus AH1273] gi|228745532|gb|EEL95555.1| hypothetical protein bcere0030_3620 [Bacillus cereus AH1273] Length = 83 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 22 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 79 >gi|225570223|ref|ZP_03779248.1| hypothetical protein CLOHYLEM_06319 [Clostridium hylemonae DSM 15053] gi|225161018|gb|EEG73637.1| hypothetical protein CLOHYLEM_06319 [Clostridium hylemonae DSM 15053] Length = 215 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 39/106 (36%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + ++ R +S E+ I+ + + E+G S + +S L+ P Sbjct: 34 DLNQLIADNLKEIRRSKALSLEQTSSLTSISKSMLSQLERGEVNPTISTVYKLSLGLKVP 93 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 ++ F PT S S E + + L F D ++ Sbjct: 94 VTAFTAPKPTPFSQTSKAEVSPLVSDDGRYRLYPVFSFRDGQDFEI 139 >gi|158425156|ref|YP_001526448.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] gi|158332045|dbj|BAF89530.1| putative transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 192 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 28/90 (31%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + + +R+R R S L E ++ + K E+G A L ++ Sbjct: 2 DDITGRLARRLRQEREARSWSLADLAERSNVSRAMISKIERGEASPTAELLNRLATGFGL 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTP 98 ++ F + + + Sbjct: 62 TLASIFAEADPGLDPAAPRVARRAEQAEWR 91 >gi|153810982|ref|ZP_01963650.1| hypothetical protein RUMOBE_01373 [Ruminococcus obeum ATCC 29174] gi|149832870|gb|EDM87953.1| hypothetical protein RUMOBE_01373 [Ruminococcus obeum ATCC 29174] Length = 126 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 1/88 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R +SQ++L + LG++ + +E G Q IS+ + PIS F Sbjct: 8 NKLAQLRQNAHLSQKQLAQKLGVSQASINYWENGQRTPSVKAAQKISDYFKMPISEIFSP 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLN 104 +I++ N F ++ Sbjct: 68 YKEEI-NITNIVNAAEKFATSRKTNDDI 94 >gi|28563950|ref|NP_788259.1| hypothetical protein OB3538 [Oceanobacillus iheyensis HTE831] Length = 81 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 14/78 (17%), Positives = 35/78 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R G++QE++ E + + + K E+G + L + + ++ F Sbjct: 2 GSKMREARKKKGLTQEEVAEICNLDDKHIGKLERGEKTPLVTTLFKYWKATDIDVNRLFQ 61 Query: 76 VSPTVCSDISSEENNVMD 93 + + S+ ++ +D Sbjct: 62 ELDELERKLKSQHSSEVD 79 >gi|297162225|gb|ADI11937.1| putative transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 190 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 8/76 (10%), Positives = 24/76 (31%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + ++ R G + + L G++ + + E+ +++ L I+ Sbjct: 11 LARNLKRWRNERGFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLL 70 Query: 75 DVSPTVCSDISSEENN 90 D + Sbjct: 71 DYESGPKVQLVPAAQA 86 >gi|268608723|ref|ZP_06142450.1| transcriptional regulator, XRE family protein [Ruminococcus flavefaciens FD-1] Length = 238 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I L+R +SQ++ LGI+ + YEKG+ G + L I++ + +P Sbjct: 9 ITLQRKERHISQKQAATDLGISQALLSHYEKGIRECGLNFLVKIADYYNVSCDYLLGRTP 68 Query: 79 TVCSDISSEENNVMD 93 + E+ D Sbjct: 69 EPEGKTITIEDIPDD 83 >gi|256374687|ref|YP_003098347.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918990|gb|ACU34501.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 86 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI + R G+S+ L E + + Q + E+G + I EV P+ F Sbjct: 12 IHNRIGVLRAERGLSRADLAEAVEVNPQTIGALERGDHYPSLDLALRICEVFGLPVEAVF 71 Query: 75 DVSP 78 +P Sbjct: 72 GRAP 75 >gi|255292272|dbj|BAH89394.1| XRE family transcriptional regulator [uncultured bacterium] Length = 172 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R R++LG+S ++GE +G+T + K E ++ + L + L +S Sbjct: 23 LRIGAKLRHARLMLGLSLCEVGERIGVTEGYLSKLENNRSQASMATLHRLVGALGMNMSE 82 Query: 73 FFDVSPTVCSDIS 85 F S I+ Sbjct: 83 LFATSSDDGLPIT 95 >gi|255292223|dbj|BAH89347.1| XRE family transcriptional regulator [uncultured bacterium] gi|255292806|dbj|BAH89908.1| XRE family transcriptional regulators [uncultured bacterium] Length = 156 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R R++LG+S ++GE +G+T + K E ++ + L + L +S Sbjct: 11 LRIGAKLRHARLMLGLSLCEVGERIGVTEGYLSKLENNRSQASMATLHRLVGALGMNMSE 70 Query: 73 FFDVSPTVCSDIS 85 F S I+ Sbjct: 71 LFATSSDDGLPIT 83 >gi|154687854|ref|YP_001423015.1| putative transcriptional regulator [Bacillus amyloliquefaciens FZB42] gi|126363018|emb|CAM35832.1| hypothetical protein RBAM03558 [Bacillus amyloliquefaciens FZB42] gi|154353705|gb|ABS75784.1| putative transcriptional regulator [Bacillus amyloliquefaciens FZB42] Length = 67 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 21/59 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 I+ R +SQ L + +T Q + E S I+ L + I F+ Sbjct: 3 NNIKKLRTAADISQNDLAKLCNVTRQTINAIENNKYDPTLSLAFSIAHALNTGIDKVFN 61 >gi|108757722|ref|YP_635287.1| DNA-binding protein [Myxococcus xanthus DK 1622] gi|108461602|gb|ABF86787.1| DNA-binding protein [Myxococcus xanthus DK 1622] Length = 117 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 3/95 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R ++QE L E ++ +++ E+G L +S+ L+ + F Sbjct: 19 GDHVRKLRTARELTQEALAERSDLSVDAIRRIERGSFSPSLDTLGKLSKGLDVSLKTLFQ 78 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 S+ +E DF+S G ++ + I Sbjct: 79 GFERERSNAVAEI---CDFLSLRSGREVELAWRVI 110 >gi|6249458|emb|CAB60047.1| hypothetical protein [Legionella pneumophila] Length = 244 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 2/112 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G RI+ RM ++ + L E + ++ YE+G G ++ ++ LE Sbjct: 20 SIKEKIGLRIKQERMSKKLTMKALAELTDNLNISRINNYERGERTPGPEEIKQLARALEV 79 Query: 69 PISFFFDVSPTVCSDISSEENNVMDF-ISTPDGLQLNRYFIQIDDVKVRQKI 119 SF +S + + + +I + +K+ Sbjct: 80 SPSFLMCLSDDRQGSFKTPGLGGLLPILDYKSACYPALVIQRIKEESYSEKL 131 >gi|89100719|ref|ZP_01173575.1| hypothetical protein B14911_02514 [Bacillus sp. NRRL B-14911] gi|89084594|gb|EAR63739.1| hypothetical protein B14911_02514 [Bacillus sp. NRRL B-14911] Length = 304 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 13/108 (12%), Positives = 34/108 (31%), Gaps = 6/108 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISE 64 V +G ++ R+ GMS + L I + + E+G + + +E Sbjct: 3 VLTELGNHLKEARIERGMSLDDLQTATKIQKRYLVGIEEGNYSMMPGKFYVRAFIKQYAE 62 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + F+ ++ ++ ++ ++ D Sbjct: 63 AVGIDPEELFEQYKNDIPVTAASDDIPEKLSRVQTRKNISGSSSRLAD 110 >gi|332535597|ref|ZP_08411365.1| hypothetical protein PH505_db00030 [Pseudoalteromonas haloplanktis ANT/505] gi|332034981|gb|EGI71502.1| hypothetical protein PH505_db00030 [Pseudoalteromonas haloplanktis ANT/505] Length = 95 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 31/79 (39%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P +G I+L R G SQ +L + L + + + E G R+ I +L Sbjct: 16 PALKIIGLNIKLARTKSGFSQAELADKLNVEQSYISRVESGSVAASCERIYEIIHLLGCK 75 Query: 70 ISFFFDVSPTVCSDISSEE 88 S F S V + + E Sbjct: 76 ASDIFPESKEVETQFNRAE 94 >gi|320105894|ref|YP_004181484.1| XRE family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924415|gb|ADV81490.1| transcriptional regulator, XRE family [Terriglobus saanensis SP1PR4] Length = 62 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 23/60 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R LG SQ L E L ++ Q V E G I+++ I F Sbjct: 3 NRMRELRAELGWSQAVLAERLEVSRQSVNAIETGKYDPSLPLAFRIAKIFGKRIEEIFSE 62 >gi|317500517|ref|ZP_07958740.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|331089383|ref|ZP_08338282.1| hypothetical protein HMPREF1025_01865 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898106|gb|EFV20154.1| transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|330404751|gb|EGG84289.1| hypothetical protein HMPREF1025_01865 [Lachnospiraceae bacterium 3_1_46FAA] Length = 118 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 31/76 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G+ Q L E + ++ Q + + E G N + + L H+S+ + + Sbjct: 4 NRVKELRTERGLRQGDLAEKMNVSQQTISRIENGENVLPSDILIHLSKYFHVSTDYILKL 63 Query: 77 SPTVCSDISSEENNVM 92 S + E M Sbjct: 64 SDVRMTQEYRLEMEQM 79 >gi|302387998|ref|YP_003823820.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302198626|gb|ADL06197.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 93 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 12 DINV-GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 D +V G RI+ R G +QE L E + I +++ K E+GV + + SE + Sbjct: 4 DQHVCGARIQELRKSKGYTQEALAEAIDIDAKRISKIERGVISASYNDMILFSEFFGVTL 63 Query: 71 SFF 73 + Sbjct: 64 DYL 66 >gi|297162517|gb|ADI12229.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 193 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 39/114 (34%), Gaps = 3/114 (2%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P++ + R+ R+ G S ++L G++ + + E+ A+ L + E Sbjct: 9 PEPLEARLAVRLAELRVERGWSLDELARRTGVSRSTLSRLERAEISPTAALLGKLCAAYE 68 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 +S + + + R + +R +++E Sbjct: 69 RTMSRLLAEVEEEPPQLVRADRQAVWRDEKSG---FTRRSVSPPHPGLRGELVE 119 >gi|256376141|ref|YP_003099801.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920444|gb|ACU35955.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 471 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 6/107 (5%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDIS 85 G++Q +L LGI+ + + E + L ++E SFF Sbjct: 17 RGLTQVELARALGISASYLNQIEHDSRPLTVPVLLRLTESFGVDASFFATHDSARLFAEL 76 Query: 86 SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 E + D +P L+ ++ + +I+L R ++++ Sbjct: 77 QEALSGAD--VSPGDLREV----ATSRPELARAVIDLHRRYRQADEQ 117 >gi|229014333|ref|ZP_04171452.1| hypothetical protein bmyco0001_47360 [Bacillus mycoides DSM 2048] gi|228746933|gb|EEL96817.1| hypothetical protein bmyco0001_47360 [Bacillus mycoides DSM 2048] Length = 65 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 22/61 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R ++Q ++ + + +T Q + E I++ + F + Sbjct: 5 NKIKELRKQQHITQIEMAKAMQVTRQTIVAIENHHYNPSLELSLKIAKYFGMKVEEIFTL 64 Query: 77 S 77 Sbjct: 65 E 65 >gi|257066230|ref|YP_003152486.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] gi|256798110|gb|ACV28765.1| transcriptional regulator, XRE family [Anaerococcus prevotii DSM 20548] Length = 65 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I R +SQ +L + +G+T Q + E I++ I FD+ Sbjct: 4 KIAELRKENKLSQAELADIVGVTRQTITSIETEKYIASLPLAYKIAKYFNLKIEDVFDLE 63 Query: 78 PT 79 Sbjct: 64 GE 65 >gi|227540362|ref|ZP_03970411.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227239686|gb|EEI89701.1| XRE family transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 138 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 54/129 (41%), Gaps = 11/129 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G++I R I G+ Q+ L LG++ Q + K E+ V L+ I+ VL + Sbjct: 11 HLGRKISRIREIRGIKQDYLAIELGVSQQTISKIEQSE-EVEDLTLEKIAAVLGVTVEGI 69 Query: 74 FDVSPTVCSDI----SSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + + + E + + + L++ I++ K L +++S Sbjct: 70 KNFNEEAIFNYFNTFNDEVTHSFNTYHSCTFNPLDKLMEVIEENK------SLYERLLAS 123 Query: 130 EKKYRTIEE 138 E++ + Sbjct: 124 EREKVELLR 132 >gi|212696475|ref|ZP_03304603.1| hypothetical protein ANHYDRO_01013 [Anaerococcus hydrogenalis DSM 7454] gi|212676568|gb|EEB36175.1| hypothetical protein ANHYDRO_01013 [Anaerococcus hydrogenalis DSM 7454] Length = 66 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 21/58 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+ L R ++QE+L L ++ Q + E G I+ I F Sbjct: 3 NRLELIRKENKITQEELASILEVSRQTIGSLENGRYNPSIILAFKIARYFGLTIEDIF 60 >gi|152983227|ref|YP_001352681.1| subunit S of type I restriction-modification system [Janthinobacterium sp. Marseille] gi|151283304|gb|ABR91714.1| subunit S of type I restriction-modification system [Janthinobacterium sp. Marseille] Length = 78 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 27/59 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 IR R+ G +QE++ E + V E+G + ++ I+ L+ P+S + Sbjct: 18 SNIRRIRLEKGFTQERVAELADLHTNYVSSVERGERNISICNIERIAFALDVPMSRLLE 76 >gi|124516094|gb|EAY57603.1| putative transcriptional regulator, XRE family [Leptospirillum rubarum] Length = 121 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R MSQ E LGI +++ ++E G L +S + + + + Sbjct: 16 LGARIRHLRG--NMSQTAFAELLGIRQEEISRFESGSRVPSVELLVRLSGIHKVTLDWLV 73 Query: 75 DVSPTVCSDISSEENNV 91 + EE+ Sbjct: 74 MGGTSGGEGSVREEDTP 90 >gi|111019821|ref|YP_702793.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110819351|gb|ABG94635.1| possible transcriptional regulator [Rhodococcus jostii RHA1] Length = 221 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 33/79 (41%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + +++R R G+S + +GI+ + K E S L ++ L+ P Sbjct: 32 DLEKVIARQVRSLRKASGLSVGDMAAKVGISKAMLSKIENSQTSCSLSTLARLAAGLDVP 91 Query: 70 ISFFFDVSPTVCSDISSEE 88 ++ F + T + E Sbjct: 92 VTSLFRGADTARDAVYVEA 110 >gi|28628140|gb|AAO34623.1| unknown [Erwinia chrysanthemi] Length = 119 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FD 75 R+ R ++Q+ L + I Q+++YE G + L +++VL + FD Sbjct: 15 ARLIQLRKAADLTQQALADRASIHVNQIRRYEAGSAQPTLDALIRLAKVLRVSLDGLVFD 74 Query: 76 VSPTVCSDISSEENN 90 SD + + Sbjct: 75 DHERGPSDDLALQFE 89 >gi|163942236|ref|YP_001647120.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229013704|ref|ZP_04170833.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048] gi|229135335|ref|ZP_04264127.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196] gi|163864433|gb|ABY45492.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] gi|228648124|gb|EEL04167.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST196] gi|228747626|gb|EEL97500.1| Transcriptional regulator, Xre [Bacillus mycoides DSM 2048] Length = 190 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L + G++ + K E+G + + Sbjct: 1 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVI 60 Query: 60 QHISEVLESPISFFF 74 I++ L P+S Sbjct: 61 WKITKGLSIPLSRLM 75 >gi|330901746|gb|EGH33165.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 118 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 1/109 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M PV +V + +R R +SQ L E G++ + + E G V + L Sbjct: 1 MHKENSQRPPVLQHVSQNVRRLRNSADLSQTALAEKSGVSRRMLVAIEAGEKNVSLATLD 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++E LE S +P E I+ + L R + Sbjct: 61 RVAEALEVAFSDLIQ-APENHDYSRINELAWAGTIAGSKAVLLARAVAR 108 >gi|323140527|ref|ZP_08075454.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322414979|gb|EFY05771.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 71 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R++ + Q L E +GIT Q + K E G R + I++ L+ +S Sbjct: 7 VEMGRKIRYYRIMQELGQGMLAEQIGITPQYLSKIEHGSARPSMDLVFRIADKLQVKVSH 66 Query: 73 FFD 75 + Sbjct: 67 LLE 69 >gi|322386548|ref|ZP_08060175.1| hypothetical protein HMPREF9422_1540 [Streptococcus cristatus ATCC 51100] gi|321269467|gb|EFX52400.1| hypothetical protein HMPREF9422_1540 [Streptococcus cristatus ATCC 51100] Length = 136 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 11/82 (13%), Positives = 28/82 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + ++ R ++QE L E L ++ + ++E G L IS + + Sbjct: 1 MKISQVLKDIRQHHQLTQEALAERLKVSRSAIARWESGKGIPDIGNLIAISREFDLSLDQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + + + Sbjct: 61 LIKEDERLEKKVIEDSKAKKWH 82 >gi|313115714|ref|ZP_07801167.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium cf. prausnitzii KLE1255] gi|310621932|gb|EFQ05434.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium cf. prausnitzii KLE1255] Length = 102 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 33/96 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + + R +Q+++ + LGI+ Q YE G L + E I + Sbjct: 2 ENLTAIRKESHATQQEVADYLGISRQAYGNYESGKREPDYETLLKLGEYFNCSIDYLLGS 61 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 S +V + SE + + ++ D Sbjct: 62 SRSVRYPLLSEFERSLLEQYRNATPAIQSAVCKLLD 97 >gi|310827449|ref|YP_003959806.1| hypothetical protein ELI_1860 [Eubacterium limosum KIST612] gi|308739183|gb|ADO36843.1| hypothetical protein ELI_1860 [Eubacterium limosum KIST612] Length = 67 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ IR R ++Q +L GI+ V E G G + + I++VL+ + Sbjct: 2 MTIGEIIRTAREEKNLNQSQLAAKAGISQATVNYLETGKRNPGFTTIVKIAKVLDLNLED 61 Query: 73 FFD 75 + Sbjct: 62 LTE 64 >gi|302527873|ref|ZP_07280215.1| DNA-binding protein [Streptomyces sp. AA4] gi|302436768|gb|EFL08584.1| DNA-binding protein [Streptomyces sp. AA4] Length = 226 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 39/124 (31%), Gaps = 10/124 (8%) Query: 2 VGNKKIPN-----PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 + ++PN P+DI + +R R G+S ++ G+ + + E G Sbjct: 35 MERTQMPNESTGAPLDI-IAASLRRERARAGLSLTEVARRAGLAKSTLSQLESGAGNPSV 93 Query: 57 SRLQHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 L + L+ P S + I + + + L R Sbjct: 94 ETLWALGVALDVPFSRLVEPERQEVKVIRAGKGPTVFAEHADYACTLLSA----CPSAAR 149 Query: 117 QKII 120 + I Sbjct: 150 RDIY 153 >gi|240103012|ref|YP_002959321.1| Transcription regulator, putative [Thermococcus gammatolerans EJ3] gi|239910566|gb|ACS33457.1| Transcription regulator, putative [Thermococcus gammatolerans EJ3] Length = 195 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV IP P+D ++ IR R LG++QE+L G+T + K E G S Sbjct: 1 MVITVIIPRPIDPSI---IRKIRKELGITQEELARKAGVTQAYIAKLESGKVDPRLSTFN 57 Query: 61 HI 62 I Sbjct: 58 RI 59 >gi|255034983|ref|YP_003085604.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254947739|gb|ACT92439.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 126 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 10/125 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+RI+ R + G +Q KL + L + + + +E G N + L+ ++E+ + ++ Sbjct: 4 VGERIKKYRELAGWNQHKLAKALKKSGKAVISNWETGRNDPSLAELRLMAELFGTTVAQL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 P + E I D + L R + ++ +I L + ++K Sbjct: 64 VGEVP-----MFEEPREHYIMIKKDDLIDLQRKALALEAD----RINALKEQLEQAQKAD 114 Query: 134 RTIEE 138 + EE Sbjct: 115 ESSEE 119 >gi|160931668|ref|ZP_02079062.1| hypothetical protein CLOLEP_00499 [Clostridium leptum DSM 753] gi|156869313|gb|EDO62685.1| hypothetical protein CLOLEP_00499 [Clostridium leptum DSM 753] Length = 76 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 7/68 (10%), Positives = 27/68 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R+ G +Q++L + ++ + + E G ++ + + + + + Sbjct: 3 NKIKELRLEAGYTQKQLADLALVSSRTIISLETGQYNPSLLLAYRLARIFSTTVEELYCL 62 Query: 77 SPTVCSDI 84 + + Sbjct: 63 EENLKEED 70 >gi|49480398|ref|YP_039247.1| transcriptional regulator, DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331954|gb|AAT62600.1| transcriptional regulator, DNA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 63 Score = 42.1 bits (97), Expect = 0.023, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 2 NKVKQYRKSEGLSQLELAKRVKVARQTINLIENNKYNPSLALCIELAKALKTDLNSLF 59 >gi|330874491|gb|EGH08640.1| putative regulatory protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 74 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G SQE+L G+ + E+G + + ++E L D Sbjct: 10 GLRLIEIRKAKGWSQERLALESGLARSYLGGVERGQRNIALLNIYKLAEALAVTPGSLMD 69 >gi|324327259|gb|ADY22519.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 67 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L M+QE L + +G+ + + EKG I+ VL S I F Sbjct: 6 KIKEYRAKLNMTQEDLAKQVGVRRETINHLEKGKYNPSLQLAHDIARVLHSTIDEVFIFE 65 Query: 78 PT 79 Sbjct: 66 DE 67 >gi|309776169|ref|ZP_07671160.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] gi|308916120|gb|EFP61869.1| toxin-antitoxin system, antitoxin component, Xre family [Erysipelotrichaceae bacterium 3_1_53] Length = 173 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 13/89 (14%), Positives = 35/89 (39%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + +G R+++ R G++ +++ + I + E+G +I+ L Sbjct: 9 DTILQAIGDRLKILREERGLTFKEMAKEACIDRDNYMRVERGERNSSIGIFCNIAIGLNI 68 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFIST 97 +S F+ +C + + + T Sbjct: 69 HVSEIFNEDYIICLKKYEDIQYIRKIMDT 97 >gi|309777861|ref|ZP_07672807.1| helix-turn-helix domain-containing protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914422|gb|EFP60216.1| helix-turn-helix domain-containing protein [Erysipelotrichaceae bacterium 3_1_53] Length = 266 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 38/92 (41%), Gaps = 5/92 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++ E+L E + ++ + YE K + + +++ + Sbjct: 5 IQERLKDLRVERGLTLEQLEEQVNLSKSALGSYEAKDFKDISHYAIIKLAKFYGVTADYL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 +S T + D + D ++L + Sbjct: 65 LGLSQTRNHPNADLA----DLCLSDDMIELLK 92 >gi|322434684|ref|YP_004216896.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX9] gi|321162411|gb|ADW68116.1| transcriptional regulator, XRE family [Acidobacterium sp. MP5ACTX9] Length = 64 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R+ R SQ+ L + L ++ Q V E G I+ + + I F Sbjct: 3 NRLRILRAERAWSQQDLADRLEVSRQSVNAIETGRYDPSLPLAFRIARLFGASIETIFLD 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|296162693|ref|ZP_06845479.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] gi|295887081|gb|EFG66913.1| transcriptional regulator, XRE family [Burkholderia sp. Ch1-1] Length = 113 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 32/73 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ R+ R G++Q+ L + +G+ Q+++YE G ++ ++ I+ L Sbjct: 1 MSIAARLATLRKQKGLTQQALADAIGLHITQIKRYEAGTSQPSLEAIKKIARTLRVTTDS 60 Query: 73 FFDVSPTVCSDIS 85 + D Sbjct: 61 LIFEEEELEPDAD 73 >gi|228908228|ref|ZP_04072074.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] gi|228851426|gb|EEM96234.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] Length = 292 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ F Sbjct: 6 LGIIIKGLRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYIF 64 Query: 75 DVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + D + + +L + + Sbjct: 65 ALTKNKKIKYIENVKCVMRDCVKQKEYNELYEIVKKEKNEN 105 >gi|256823032|ref|YP_003146995.1| XRE family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796571|gb|ACV27227.1| transcriptional regulator, XRE family [Kangiella koreensis DSM 16069] Length = 70 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RIR+ R MSQ +L E +G++ + + E G I+E + P+ F Sbjct: 7 NRIRVFRAEHRMSQGELAEAIGVSRKTISTIEVGKFVPSTIIALKIAEYFKVPVEEVF 64 >gi|218132335|ref|ZP_03461139.1| hypothetical protein BACPEC_00194 [Bacteroides pectinophilus ATCC 43243] gi|291086949|ref|ZP_06344978.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|217992673|gb|EEC58675.1| hypothetical protein BACPEC_00194 [Bacteroides pectinophilus ATCC 43243] gi|291076456|gb|EFE13820.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 204 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR--VGASRLQHISEVLESPISFFFD 75 R++ R I +QE+LG+ I+ Q +++YE+G A L +++ L+ + Sbjct: 35 RLKELRNIRNYTQEELGKITNISVQSIRRYEQGRLNEEPSAYNLLQLAKALDVTPEYLLI 94 Query: 76 VSPTVCSDISSEENN 90 + S + + Sbjct: 95 GDNNMTSYTEAIKRE 109 >gi|254474601|ref|ZP_05087987.1| DNA-binding protein [Ruegeria sp. R11] gi|214028844|gb|EEB69679.1| DNA-binding protein [Ruegeria sp. R11] Length = 189 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 4/83 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M P +G +R R ++ L LG + + + E+ + S L+ Sbjct: 1 MTDQSPQP----ATLGADLRALRKSRSLTLTDLAARLGRSVGWLSQVERDKSEPSISDLR 56 Query: 61 HISEVLESPISFFFDVSPTVCSD 83 I++ L+ P+S F S + + Sbjct: 57 AIAKCLDVPMSMLFAHSASPADE 79 >gi|208742303|ref|YP_002267755.1| transcriptional regulator [Bacillus cereus] Length = 66 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 27/57 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R+ L MSQ L +G+ + + E G I++VL++PI F Sbjct: 6 RMKEYRVKLNMSQGDLANKVGVRRETIGNLENGKYNPSLKLAYDIAKVLKAPIEVLF 62 >gi|159038045|ref|YP_001537298.1| XRE family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916880|gb|ABV98307.1| transcriptional regulator, XRE family [Salinispora arenicola CNS-205] Length = 524 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 44/123 (35%), Gaps = 15/123 (12%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPI 70 D+ +G+R+ R G+SQE L +G T + ++K E + + I++ L+ P+ Sbjct: 120 DMTIGQRVAFYRRRRGLSQEVLAGLVGKTQEWLRKVETNRADLDRLSVIRAIAKALDVPL 179 Query: 71 SF------FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIE 121 F+ S + + D L D +R+ + Sbjct: 180 GDLIGAPSLFEWSDDSGRETIPALRA-----ALHDYRHLAPALASAGDVEAPALREIEND 234 Query: 122 LVR 124 + Sbjct: 235 VAE 237 >gi|153012131|ref|YP_001373341.1| cupin 2 domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151564019|gb|ABS17512.1| Cupin 2 conserved barrel domain protein [Ochrobactrum anthropi ATCC 49188] Length = 202 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Query: 8 PNPVDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 P P D ++G RIRLRR LG++ L E G++ + + E+G+ L I+EVL Sbjct: 15 PAPNDAGDIGARIRLRRQTLGLTLGYLSEVSGLSTGALSQIERGLVSPTVRTLYTIAEVL 74 Query: 67 ESPISFFFD 75 + D Sbjct: 75 SMSPAQLID 83 >gi|217974624|ref|YP_002359375.1| helix-turn-helix domain-containing protein [Shewanella baltica OS223] gi|217499759|gb|ACK47952.1| helix-turn-helix domain protein [Shewanella baltica OS223] gi|319428169|gb|ADV56243.1| helix-turn-helix domain protein [Shewanella putrefaciens 200] Length = 367 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R+ R G+S L +G++ ++KYE G +S L +++ L+ +FF Sbjct: 4 ERLERARKAAGLSMNALANEVGLSANAIKKYEHGTAMPSSSNLLKLAKALDVRTEYFF 61 >gi|117164576|emb|CAJ88122.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC 23877] Length = 200 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 35/86 (40%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D V KRIR R+ G S E+L ++ + + E G R+ +L I+ L++ Sbjct: 9 DDLDGLVRKRIRALRVAQGWSLEELATRARLSQSSLSRIENGQRRLALDQLVTIARALDT 68 Query: 69 PISFFFDVSPTVCSDISSEENNVMDF 94 + + + ++ Sbjct: 69 TLDQLVETAADDVITSPVIDSTHGSM 94 >gi|16764372|ref|NP_459987.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16765948|ref|NP_461563.1| regulatory protein [Phage Gifsy-1] gi|169257258|ref|YP_001700635.1| probable regulatory protein; putative repressor protein; helix-turn-helix motif [Phage Gifsy-1] gi|3309514|gb|AAC26077.1| unknown [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16419525|gb|AAL19946.1| Gifsy-2 prophage putative regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16421177|gb|AAL21522.1| Gifsy-1 prophage protein [Phage Gifsy-1] gi|261246229|emb|CBG24033.1| probable regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992757|gb|ACY87642.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|312912000|dbj|BAJ35974.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|312913623|dbj|BAJ37597.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323129276|gb|ADX16706.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987903|gb|AEF06886.1| regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 136 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 6/116 (5%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 K +P+ KRI+ G S L + ++ V+K+ G + RL+ +S Sbjct: 2 NKNLHPIFA---KRIQQVLDENGWSMADLSRRVMLSHTSVRKWASGTSVASGERLKRLSA 58 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 V P +FF + E + L F Q+ + + + I+ Sbjct: 59 VTGRPEYWFFM---EPGDESEGERAEPKPRVLDEKEETLLSLFNQLPEAEKLRVIL 111 >gi|87308687|ref|ZP_01090827.1| transcriptional regulator, XRE family protein [Blastopirellula marina DSM 3645] gi|87288779|gb|EAQ80673.1| transcriptional regulator, XRE family protein [Blastopirellula marina DSM 3645] Length = 73 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 25/67 (37%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + G R+R R+ SQE + + E+G + ++ I+E L Sbjct: 6 DILVRFGARVRELRLQQDYSQEAFAHACELDRTYIGGIERGERNLALRNIERIAEALGVT 65 Query: 70 ISFFFDV 76 ++ Sbjct: 66 LAELMKG 72 >gi|304319727|ref|YP_003853370.1| hypothetical protein PB2503_00742 [Parvularcula bermudensis HTCC2503] gi|303298630|gb|ADM08229.1| hypothetical protein PB2503_00742 [Parvularcula bermudensis HTCC2503] Length = 129 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 9/122 (7%) Query: 21 LRRMILGMSQEKLGECLGITF-QQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPT 79 + R+ G+SQ L E +GI + K+E G L ++ LE D Sbjct: 1 MARLRRGLSQTHLAEMVGIGSGSTIAKFEAGKRPPSLPTLIKLAAALEIETPALLDGLDD 60 Query: 80 VCSDISSEENNVMDFISTPDGLQLN-RYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIEE 138 + L+L R + ++ +R+ + + + ++ R + E Sbjct: 61 RQLPA-----EDPSPLDGAIVLELIRRRAVTLESPHIRKVVYSNLDKL--DDRTLRRLLE 113 Query: 139 EC 140 + Sbjct: 114 DL 115 >gi|83945214|ref|ZP_00957563.1| hypothetical protein OA2633_00565 [Oceanicaulis alexandrii HTCC2633] gi|83851384|gb|EAP89240.1| hypothetical protein OA2633_00565 [Oceanicaulis alexandrii HTCC2633] Length = 240 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 20/56 (35%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G ++ RR LG +Q + I + K E G + + ++E Sbjct: 4 GAFLKARREALGWTQPEAAAKARIEQSYLSKLETGKSFPSEEVFERLAEAYGFDAE 59 >gi|332527737|ref|ZP_08403778.1| XRE family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332112135|gb|EGJ12111.1| XRE family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 189 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 30/64 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V VG+ +R R G+SQ L E G++ + + E+G + SRL ++E L Sbjct: 13 DVLAFVGQNLRAARQNAGLSQAALAEASGLSRRMIVALEQGDTNISLSRLDRLAEALGVG 72 Query: 70 ISFF 73 + Sbjct: 73 FADL 76 >gi|323693267|ref|ZP_08107485.1| xre family Toxin-antitoxin system [Clostridium symbiosum WAL-14673] gi|323502750|gb|EGB18594.1| xre family Toxin-antitoxin system [Clostridium symbiosum WAL-14673] Length = 115 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 4/74 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK +D +G R++ R ++ E+L E G++ + +++ E N +L Sbjct: 1 MARKKK----IDKEMGFRLKQARTEQKLTYEELAEKSGVSSRYIKEIENHGNVPSLEKLG 56 Query: 61 HISEVLESPISFFF 74 + L FF Sbjct: 57 QLIRALHISADPFF 70 >gi|311894815|dbj|BAJ27223.1| putative DNA-binding protein [Kitasatospora setae KM-6054] Length = 167 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 6/114 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISE 64 + + +G ++R R G+S + E ++ V YE+G V RL ++E Sbjct: 1 MSSDYAKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELAE 60 Query: 65 VLESPISFFFDVSPTVCSDISSE----ENNVMDFISTPDGLQLNRYFIQIDDVK 114 P+ + + + + + L RY I + Sbjct: 61 FYGVPVQELLPGGTPGGAAEPPPRLVLDLERLTQVPSEKAGPLQRYAATIQSQR 114 >gi|302672180|ref|YP_003832140.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396653|gb|ADL35558.1| HTH domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 119 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 14/121 (11%), Positives = 47/121 (38%), Gaps = 5/121 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +RI G+SQ G+ +G++ + ++ A ++ I + L+ Sbjct: 1 MIISERIFKILEQRGISQSAFGKMVGLSGSTISDWKTKKTNPSADKIMTICDALDITPEQ 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ--KIIELVRSIVSSE 130 D +E + + + ++ + ++ + ++ + ++ ++ + E Sbjct: 61 LLTG---KGIDGDFDEYSSRELDFSFHDKEIILEYHKLSIDQQKRFERYLKTLKKLDDLE 117 Query: 131 K 131 K Sbjct: 118 K 118 >gi|288905613|ref|YP_003430835.1| transcriptional regulator [Streptococcus gallolyticus UCN34] gi|288732339|emb|CBI13909.1| putative transcriptional regulator [Streptococcus gallolyticus UCN34] Length = 147 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 29/62 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + ++ R ++QE+L + +T Q + ++E G + L+ +S+ I+ Sbjct: 1 MEIQEVLKNLRDKYQLTQEELAARVLVTRQAISRWETGETQPNTDTLKLLSKEFNVSINT 60 Query: 73 FF 74 Sbjct: 61 LL 62 >gi|209809204|ref|YP_002264742.1| putative HTH-type transcriptional regulator [Aliivibrio salmonicida LFI1238] gi|208010766|emb|CAQ81159.1| putative HTH-type transcriptional regulator [Aliivibrio salmonicida LFI1238] Length = 504 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A L+ I+ V Sbjct: 13 FLGTKIRNLRKRNHLTMEDLSTRCVRVDPENSPSVSYLSMIERGKRVPSADMLEVIATVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + S+F D P + Sbjct: 73 QKESSWFLDNEPEAQAITPD 92 >gi|126654396|ref|ZP_01726142.1| predicted transcription regulator, containing DNA-binding HTH domain [Bacillus sp. B14905] gi|126589164|gb|EAZ83345.1| predicted transcription regulator, containing DNA-binding HTH domain [Bacillus sp. B14905] Length = 68 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 RIR R ++QE L + +G++ Q + E G +IS+ Sbjct: 3 NRIRELRKSKKITQEDLSKVVGVSRQSIIAIESGKFNPSLELAYNISKAFNCT 55 >gi|91773669|ref|YP_566361.1| XRE family transcriptional regulator [Methanococcoides burtonii DSM 6242] gi|91712684|gb|ABE52611.1| Helix-turn-helix-containing transcriptional regulator, XRE family [Methanococcoides burtonii DSM 6242] Length = 65 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 28/62 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R ++QE+L + +G+ + + EKG I++V +S I F + Sbjct: 4 RIKELRARYDLTQEELAKKVGVRRETILFLEKGKYNPSLKLAYTIAKVFDSTIEDVFILD 63 Query: 78 PT 79 Sbjct: 64 DE 65 >gi|30263168|ref|NP_845545.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47528533|ref|YP_019882.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49186017|ref|YP_029269.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|52142313|ref|YP_084521.1| helix-turn-helix family DNA-binding protein [Bacillus cereus E33L] gi|65320496|ref|ZP_00393455.1| COG1476: Predicted transcriptional regulators [Bacillus anthracis str. A2012] gi|229012438|ref|ZP_04169613.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048] gi|30257802|gb|AAP27031.1| DNA-binding protein [Bacillus anthracis str. Ames] gi|47503681|gb|AAT32357.1| DNA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49179944|gb|AAT55320.1| DNA-binding protein [Bacillus anthracis str. Sterne] gi|51975782|gb|AAU17332.1| DNA-binding protein, helix-turn-helix family [Bacillus cereus E33L] gi|228748797|gb|EEL98647.1| Transcriptional regulator, XRE [Bacillus mycoides DSM 2048] Length = 69 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R G +QE+L +G++ Q + EK I+ E P++ FD Sbjct: 7 NKIVVCRAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDVFDY 66 Query: 77 SPT 79 Sbjct: 67 LEE 69 >gi|330881250|gb|EGH15399.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 378 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R G+S ++ L + ++++++E G R + Q + V P F F P V Sbjct: 16 RERAGLSAAQVARKLPVKPERIKEWEAGKARPTFLQAQKWASVAHVPFGFLFLPQPPVEQ 75 Query: 83 DISSEENNVMDFISTPDGLQLN 104 + V + L+L Sbjct: 76 LPLPDLRTVGNSAPLRPSLELV 97 >gi|325272964|ref|ZP_08139281.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324101899|gb|EGB99428.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 180 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 28/65 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R LGM+ E L E +T + K E+G+N + ++ L + F Sbjct: 4 RLKLLRKKLGMTLEMLAEKTSMTKSYLSKVERGLNTPSIAAALKLARALNVNVEELFAEE 63 Query: 78 PTVCS 82 S Sbjct: 64 QAGQS 68 >gi|313498869|gb|ADR60235.1| Cro/CI family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 180 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R LGM+ E L E G+T + K E+G+N + ++ L + F Sbjct: 4 RLKLLRKKLGMTLEMLAEKTGMTKSYLSKVERGLNTPSIAAALKLARALNVNVEELFAEE 63 Query: 78 PTVCS 82 S Sbjct: 64 QAGQS 68 >gi|295108178|emb|CBL22131.1| Predicted transcriptional regulators [Ruminococcus obeum A2-162] Length = 69 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 22/64 (34%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R G Q +L E +G + + E G I++V + F+ Sbjct: 6 KIKEYREQAGYKQSELAELVGARRETIVHLENGRYNPSLKLAMDIAKVFHVTVEELFEFV 65 Query: 78 PTVC 81 Sbjct: 66 EDEK 69 >gi|291530671|emb|CBK96256.1| Helix-turn-helix [Eubacterium siraeum 70/3] Length = 120 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 38/105 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+RIR R G++Q +L E + + + E L ++ L Sbjct: 6 ILLGQRIRAFRTKKGITQMELAERIDRSAAYMSYVETAYKSCSLDTLVMVANELNVSTDD 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 S T S+ E + + +++ ++ +R+ Sbjct: 66 LLIDSLTNTIKASNHEFTAILSDCSDYEMRVLLDIVKATKQAMRE 110 >gi|293418613|ref|ZP_06661048.1| regulatory protein CI bacteriophage origin [Escherichia coli B088] gi|291325141|gb|EFE64556.1| regulatory protein CI bacteriophage origin [Escherichia coli B088] Length = 251 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWLSSG 87 Query: 77 SPTVCSDISS 86 + Sbjct: 88 VGNMSDSTVQ 97 >gi|257865444|ref|ZP_05645097.1| predicted protein [Enterococcus casseliflavus EC30] gi|257871779|ref|ZP_05651432.1| predicted protein [Enterococcus casseliflavus EC10] gi|257799378|gb|EEV28430.1| predicted protein [Enterococcus casseliflavus EC30] gi|257805943|gb|EEV34765.1| predicted protein [Enterococcus casseliflavus EC10] Length = 135 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R+ MSQE++ + +T + +E G + L +S + + Sbjct: 1 MTIGEALKNHRVTQQMSQEEVATKILVTRTSISNWETGKTVPDSLNLLKLSTLYGCSVDE 60 Query: 73 FF 74 Sbjct: 61 LL 62 >gi|257482549|ref|ZP_05636590.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330891863|gb|EGH24524.1| DNA-binding protein [Pseudomonas syringae pv. mori str. 301020] gi|331012806|gb|EGH92862.1| DNA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 378 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R G+S ++ L + ++++++E G R + Q + V P F F P V Sbjct: 16 RERAGLSAAQVARKLPVKPERIKEWEAGKARPTFLQAQKWASVAHVPFGFLFLPQPPVEQ 75 Query: 83 DISSEENNVMDFISTPDGLQLN 104 + V + L+L Sbjct: 76 LPLPDLRTVGNSAPLRPSLELV 97 >gi|228990754|ref|ZP_04150719.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM 12442] gi|228769280|gb|EEM17878.1| Transcriptional regulator, Xre [Bacillus pseudomycoides DSM 12442] Length = 404 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+++ LE SF Sbjct: 4 LGEKIKALRKEKRLTQTQL-AGSELTKSMLSQIENGKATPSMKTLQYLASQLECEASFLL 62 Query: 75 DVSPTVCSDISS 86 + + + Sbjct: 63 EEDNEEVTKLIP 74 >gi|229164001|ref|ZP_04291939.1| hypothetical protein bcere0009_47630 [Bacillus cereus R309803] gi|228619472|gb|EEK76360.1| hypothetical protein bcere0009_47630 [Bacillus cereus R309803] Length = 73 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 28/73 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R+R R +SQ LG+ +G + Q + E+G I+ + P+ Sbjct: 1 MKLQNRVRELRAKHRISQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAHIFNVPVEE 60 Query: 73 FFDVSPTVCSDIS 85 F + D Sbjct: 61 IFMLVEGEEDDEE 73 >gi|240143278|ref|ZP_04741879.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257204756|gb|EEV03041.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 210 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R+ ++Q++L E G+ ++ YE G + L +I+ L FF Sbjct: 9 VGVLIRNFRIAAELTQKELAERCGLNESTIRNYELGNRYPDEATLLNIANHLNVS---FF 65 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 +S ++I S + + D Sbjct: 66 ALSDPDVANIFSALHVLFDMEW 87 >gi|225017227|ref|ZP_03706419.1| hypothetical protein CLOSTMETH_01153 [Clostridium methylpentosum DSM 5476] gi|224950002|gb|EEG31211.1| hypothetical protein CLOSTMETH_01153 [Clostridium methylpentosum DSM 5476] Length = 73 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 27/66 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI R +Q+++ + L + Q ++YEKG + + ++ + + + Sbjct: 4 QRIADLRTDADKTQQQIADLLHMKRQVYRRYEKGEREIPTWAVIQLARFYDVSTDYLLGL 63 Query: 77 SPTVCS 82 + Sbjct: 64 TREKRP 69 >gi|186475021|ref|YP_001856491.1| XRE family transcriptional regulator [Burkholderia phymatum STM815] gi|184191480|gb|ACC69445.1| transcriptional regulator, XRE family [Burkholderia phymatum STM815] Length = 90 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 21/56 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R R SQE+L + V E+G + ++ ++ I+ F Sbjct: 21 LRRLRAERNWSQEELAARCELDRSFVAHVERGARNISLDNVEKLANAFGVGIADLF 76 >gi|239826687|ref|YP_002949311.1| XRE family transcriptional regulator [Geobacillus sp. WCH70] gi|239806980|gb|ACS24045.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70] Length = 296 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +GKR++ R +S ++L E I + + E+G + +E + Sbjct: 5 ELGKRLKEAREAKNISLDELQEMTKIQKRYLIGIEEGNYAIMPGNFYVRAFIRQYAEAVG 64 Query: 68 SPISFFFDVSPTVCSDISSEE 88 F+ EE Sbjct: 65 LDPDEIFEQYKQDIPQSYDEE 85 >gi|188581317|ref|YP_001924762.1| anaerobic benzoate catabolism transcriptional regulator [Methylobacterium populi BJ001] gi|179344815|gb|ACB80227.1| transcriptional regulator, XRE family with shikimate kinase activity [Methylobacterium populi BJ001] Length = 299 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 15/123 (12%), Positives = 41/123 (33%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + +G+R+R R + G+S++ L + G++ + + + E G V L+ Sbjct: 1 MTDAAEQEASFLNELGRRVRHARTVRGLSRKLLSQASGLSERYIAQLESGQGNVSIILLR 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 ++ + + + + + + ++ + Sbjct: 61 RVANAMGLRLDDLVSSQEASSDWRVIRDLLDQASPDQIALAKSALAGSTAAEARTVRRRV 120 Query: 121 ELV 123 LV Sbjct: 121 ALV 123 >gi|49081770|gb|AAT50285.1| PA0535 [synthetic construct] Length = 185 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 31/61 (50%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R R G++ + L + + + V + E+G++R L IS+VL P ++F Sbjct: 10 EIASLVRELRKRKGITLQALADGIRRSVGLVSQVERGLSRPAVDDLVAISQVLGVPATYF 69 Query: 74 F 74 F Sbjct: 70 F 70 >gi|71733778|ref|YP_277140.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554331|gb|AAZ33542.1| DNA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|320326510|gb|EFW82561.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. B076] gi|320331424|gb|EFW87365.1| DNA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 378 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R G+S ++ L + ++++++E G R + Q + V P F F P V Sbjct: 16 RERAGLSAAQVARKLPVKPERIKEWEAGKARPTFLQAQKWASVAHVPFGFLFLPQPPVEQ 75 Query: 83 DISSEENNVMDFISTPDGLQLN 104 + V + L+L Sbjct: 76 LPLPDLRTVGNSAPLRPSLELV 97 >gi|58338109|ref|YP_194694.1| transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227902711|ref|ZP_04020516.1| transcriptional regulator [Lactobacillus acidophilus ATCC 4796] gi|58255426|gb|AAV43663.1| putative transcriptional regulator [Lactobacillus acidophilus NCFM] gi|227869513|gb|EEJ76934.1| transcriptional regulator [Lactobacillus acidophilus ATCC 4796] Length = 163 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 1/100 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ +R R+ L +SQ ++ + +T K E+ + + A+ L I + S+ Sbjct: 1 MKIGEALRQERLRLNLSQSQMAGDV-LTKSFYSKVERNLCSIRANDLLSILSLHNIDYSY 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 FF+ +D E + + +++ + Sbjct: 60 FFEKLKFENNDNELSETECNNLLHAAYYNNDWSKILKLQE 99 >gi|319760985|ref|YP_004124922.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] gi|317115546|gb|ADU98034.1| helix-turn-helix domain protein [Alicycliphilus denitrificans BC] Length = 102 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+ I+L R +SQ L + GI+ + E+G S LQ I+ L P+ Sbjct: 1 MNIGQAIQLARSKRKLSQAALAKRAGISVSYLSLLERGRRDPPLSTLQRIAAALVMPVEI 60 Query: 73 FF 74 F Sbjct: 61 LF 62 >gi|313904307|ref|ZP_07837685.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313470857|gb|EFR66181.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 114 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 41/109 (37%), Gaps = 2/109 (1%) Query: 4 NKKIPNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +K + N D +G++++ R+ G++Q ++ L +T + E + L + Sbjct: 2 SKSVENSFDFEDLGRKVKELRIQNGLTQNQVAAELHVTPGYISNVENNRTAMSLRVLSYY 61 Query: 63 SEVLESPISFFFD-VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 +++ + + P E I T + + +Q+ Sbjct: 62 AKLTGITLDSLVGKIEPEYRPTALDHELQNTISILTEEEKEKILATLQL 110 >gi|312961080|ref|ZP_07775585.1| helix-turn-helix domain protein [Pseudomonas fluorescens WH6] gi|311284738|gb|EFQ63314.1| helix-turn-helix domain protein [Pseudomonas fluorescens WH6] Length = 113 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 43/103 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P +G+ I R ++QE++ E LGI + + + E+GV + +L ++++ + Sbjct: 5 HPTQAQIGRMIAKHRTERNLTQEEVAERLGIGSEAISRLERGVVELSVVKLMQLADIFDC 64 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 + S +D ++ + D + Q+ Sbjct: 65 RMDELLTESSNRPNDQGQMIAGLLSGLKESDRAFILATVEQLA 107 >gi|310819832|ref|YP_003952190.1| transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309392904|gb|ADO70363.1| Transcriptional regulator [Stigmatella aurantiaca DW4/3-1] Length = 115 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 3/118 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + ++G RL R + ++Q ++ E +G+ + E+G L+ + L Sbjct: 1 MNEQLATHLGAIARLAREQMSLTQVQVAERVGLASAVYSRIERGQMIPSVETLKKLCIEL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 ++ + S + D ++ L L R + + EL R Sbjct: 61 MVSPEDLMGLTESADSGARTRPE---DDVTLRRLLFLARKLDAAKLDALVRITTELAR 115 >gi|257877407|ref|ZP_05657060.1| predicted protein [Enterococcus casseliflavus EC20] gi|257811573|gb|EEV40393.1| predicted protein [Enterococcus casseliflavus EC20] Length = 112 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 24/64 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R + R G+S +++ + L +++ YE G L H + + + + + Sbjct: 45 RFKFLREERGLSPKEVCQHLDVSYPDYTLYEAGDRLPDVLTLLHAASLYNVSVDYLLGQT 104 Query: 78 PTVC 81 Sbjct: 105 ERPE 108 >gi|226307935|ref|YP_002767895.1| Xre family DNA-binding protein [Rhodococcus erythropolis PR4] gi|226187052|dbj|BAH35156.1| putative Xre family DNA-binding protein [Rhodococcus erythropolis PR4] Length = 196 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS- 77 +R R G++ E L E G+T + K E+G++ + I+ VL++ + F S Sbjct: 5 LRTHRRRAGLTLEGLAEQTGLTKSYLSKVERGISTPSIAVALKIARVLDADVGQLFSDSM 64 Query: 78 PTVCSDISSEENNVMDFIST 97 I ++ V+D S+ Sbjct: 65 EGNAMTIVRAKDRVIDPASS 84 >gi|167758509|ref|ZP_02430636.1| hypothetical protein CLOSCI_00849 [Clostridium scindens ATCC 35704] gi|167663705|gb|EDS07835.1| hypothetical protein CLOSCI_00849 [Clostridium scindens ATCC 35704] Length = 72 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 26/66 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI R+ ++Q + + L + ++YEKG ++ L ++ + + Sbjct: 4 QRIEDLRIDHDLTQNDIAKILSCQREVYRRYEKGSRQIPVDYLIKLANYYGCSTDYILGL 63 Query: 77 SPTVCS 82 + Sbjct: 64 TDRKTP 69 >gi|134096777|ref|YP_001102438.1| Cro/CI family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005179|ref|ZP_06563152.1| Cro/CI family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909400|emb|CAL99512.1| transcriptional regulator, Cro/CI family [Saccharopolyspora erythraea NRRL 2338] Length = 201 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 26/76 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R G+ Q L + + E G L ++E L+ +S F Sbjct: 23 LGGRIGRLRTERGLDQATLARRAELEQTHLAGVESGTATPSLPVLAQLAEALDVGLSELF 82 Query: 75 DVSPTVCSDISSEENN 90 + + + + Sbjct: 83 TDARPGPAAVVLRGDE 98 >gi|258515644|ref|YP_003191866.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257779349|gb|ACV63243.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 132 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 1/123 (0%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R G +QE L + L I + YE+ + + I+E L+ + + Sbjct: 8 QRLKKERESKGWTQEYLADLLKIKIGTLSGYERSYRQPDLDMVIKIAEHLDCSVDYLLGR 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + E + + +DD+ ++ +I+ VR + + K R Sbjct: 68 TNQRSHFYEDREPTKAELEEILKNSNVMFDGAPLDDID-KEDLIDFVRIAMRTLKVKRQQ 126 Query: 137 EEE 139 E + Sbjct: 127 ENK 129 >gi|262198330|ref|YP_003269539.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262081677|gb|ACY17646.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 198 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 29/60 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR R G++ ++L ++ + + E+ + S L ++ L+ PI+ F Sbjct: 136 IGRNIRELRKTRGLTLKQLSRRTNLSVSLLSQIERAESSASVSSLFKVATALDVPITELF 195 >gi|225025876|ref|ZP_03715068.1| hypothetical protein EUBHAL_00104 [Eubacterium hallii DSM 3353] gi|224956798|gb|EEG38007.1| hypothetical protein EUBHAL_00104 [Eubacterium hallii DSM 3353] Length = 64 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R L MSQ +L + + ++ Q + EKG I L + F Sbjct: 5 RLKAARAALDMSQAELAKRVNVSRQTIVAIEKGDYNPTIKLCIAICHELGKTLDELF 61 >gi|218290222|ref|ZP_03494376.1| transcriptional regulator of molybdate metabolism, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239697|gb|EED06888.1| transcriptional regulator of molybdate metabolism, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 382 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 8/79 (10%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K PN V + R + G+++ +L +GIT Q + E+G +++ Sbjct: 30 KFPNAV--------KPLRELAGLTKSELARRVGITPQALGLIEQGKVSPSTHVALRLAKA 81 Query: 66 LESPISFFFDVSPTVCSDI 84 L + + FD D+ Sbjct: 82 LGTTVESLFDPEQGAAHDL 100 >gi|206973277|ref|ZP_03234199.1| conserved domain protein [Bacillus cereus AH1134] gi|206732161|gb|EDZ49361.1| conserved domain protein [Bacillus cereus AH1134] Length = 66 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 29/61 (47%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ L MSQE L + +G+ + + E G I++VL++P+ F Sbjct: 6 RMKEYRVKLNMSQEDLAKEVGVRRETIGNLENGKYNPSFKLTYDIAKVLKAPLEVLFWFE 65 Query: 78 P 78 Sbjct: 66 E 66 >gi|193067699|ref|ZP_03048666.1| putative repressor protein [Escherichia coli E110019] gi|192959111|gb|EDV89547.1| putative repressor protein [Escherichia coli E110019] Length = 251 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWLSSG 87 Query: 77 SPTVCSDISS 86 + Sbjct: 88 VGNMSDSTVQ 97 >gi|170758899|ref|YP_001786628.1| putative transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] gi|169405888|gb|ACA54299.1| putative transcriptional regulator [Clostridium botulinum A3 str. Loch Maree] Length = 177 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 35/86 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G++ ++L E ++ + E+ +N S LQ I EVL + Sbjct: 1 MQLGEKIKYYRKKKGLTIKELSELTNLSIGFISNLERDLNSPSVSNLQQICEVLGINLME 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 + + + + + Sbjct: 61 ILKSTEDKEYIVCKDSRSEIFSTDDK 86 >gi|163794569|ref|ZP_02188540.1| Transcriptional regulator, XRE family protein [alpha proteobacterium BAL199] gi|159180293|gb|EDP64816.1| Transcriptional regulator, XRE family protein [alpha proteobacterium BAL199] Length = 190 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 29/84 (34%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VD + +R++ R G S ++L I+ + + E A+ L + V Sbjct: 10 SVDQRIAQRLKGLRAERGWSLDQLATRSAISRATLSRLENAEVSPTANVLGKLCAVYGLT 69 Query: 70 ISFFFDVSPTVCSDISSEENNVMD 93 +S + + E + Sbjct: 70 MSRLMHMVEGEFPALVRGEAQAVW 93 >gi|148560287|ref|YP_001259882.1| hypothetical protein BOV_1998 [Brucella ovis ATCC 25840] gi|148371544|gb|ABQ61523.1| conserved hypothetical protein [Brucella ovis ATCC 25840] Length = 142 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 3/124 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 GKR+R R G++Q+++ + L ++ + E G + LQ I Sbjct: 5 GKRLRELREERGVTQKEMAQALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIWDE-- 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + +S + +P QL + + R I L I ++ K+ Sbjct: 63 AEELQNLAAVSHPRVVIDTSGLSPQATQLANLLAKNIRLIDRDTIKHLTEEIAAARKRAV 122 Query: 135 TIEE 138 Sbjct: 123 GASR 126 >gi|220929560|ref|YP_002506469.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219999888|gb|ACL76489.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 206 Score = 42.1 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 26/59 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G R++ R I +SQE LG+ LG+ + +E ++ ++E+ + Sbjct: 133 GIRLKRLRRIHNISQEDLGKVLGVGRTAIANWETNQTEPTGENIKKLAELFRVTTDYLL 191 >gi|301299974|ref|ZP_07206200.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852429|gb|EFK80087.1| helix-turn-helix protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 119 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 42/93 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ G++++ L + GI+ Q + YE G G+ L I +VL+ P ++F Sbjct: 8 EKLKEARISRGLTKKALADRTGISRQMISNYELGKTNPGSKNLLSIIKVLDFPFTYFTAE 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 S T + + + D + F + Sbjct: 68 SKTFYEGTTFFRSQSAATKKSRDMQSIRLKFQK 100 >gi|300783917|ref|YP_003764208.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299793431|gb|ADJ43806.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 211 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG RIR R G++ +L G++ + + E+G R L I++ L + Sbjct: 29 VGTRIRELRRSRGLTLVQLAGRTGLSHPFLSQLERGHTRPSMVSLDRIAKALGTT 83 >gi|297153608|gb|ADI03320.1| putative transcriptional regulator, XRE family protein [Streptomyces bingchenggensis BCW-1] Length = 172 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + VG R+R R +S +L I + + E G L ++ L P Sbjct: 2 DLAARVGLRLRELREAQDLSLSELARRSAIGKGTLSELEGGRRNPTLETLYALTTALNVP 61 Query: 70 IS 71 +S Sbjct: 62 LS 63 >gi|291525631|emb|CBK91218.1| Predicted transcriptional regulators [Eubacterium rectale DSM 17629] Length = 72 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V IR R G+ Q+ L +G + + V + E+G + A + IS+ + Sbjct: 1 MAVTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISKYFNMLVED 60 Query: 73 FFDVSPTV 80 F V Sbjct: 61 VFHVEDGT 68 >gi|288918193|ref|ZP_06412548.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288350363|gb|EFC84585.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 232 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 2/104 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N V VG R+R R G + ++ GI+ + + E G R+ L ++ ++ Sbjct: 2 NLVLAAVGPRLRALRRQRGRTLPEVSRSTGISVSTLSRLESGQRRLTLELLLPLARAYQT 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQL--NRYFIQI 110 P+ P + P + + F I Sbjct: 62 PLDELIGFRPGADPRVLPRPVERAGLAFVPLTRRPGGLQAFKMI 105 >gi|257454464|ref|ZP_05619724.1| bifunctional HTH-domain containing protein/aminotransferase [Enhydrobacter aerosaccus SK60] gi|257448122|gb|EEV23105.1| bifunctional HTH-domain containing protein/aminotransferase [Enhydrobacter aerosaccus SK60] Length = 557 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 37/78 (47%), Gaps = 5/78 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECL-----GITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+R+ R G++ +L + + ++ + +E+G N + +++L ++ +L Sbjct: 10 GQRLTQLRKSKGLTTAELADLMTQAGAKVSRAAISNWERGSNGIVSNKLPVLASLLGCSE 69 Query: 71 SFFFDVSPTVCSDISSEE 88 S+ + +++++ Sbjct: 70 SYLLSGTGVESHNVNTQA 87 >gi|254497251|ref|ZP_05110059.1| prophage repressor CI-like protein [Legionella drancourtii LLAP12] gi|254353479|gb|EET12206.1| prophage repressor CI-like protein [Legionella drancourtii LLAP12] Length = 224 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G+RI R G++++ L E + ++ +E+G+ G ++ ++E L+ Sbjct: 3 IKEKIGERIFQERQAKGLTRKALSELTDDLKPSRINNWERGIRTPGPEEIKQLAEALDVA 62 Query: 70 ISFFFDVSPTV 80 + ++ Sbjct: 63 PGYLMCLTDDK 73 >gi|228983647|ref|ZP_04143850.1| hypothetical protein bthur0001_3690 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229021982|ref|ZP_04178541.1| hypothetical protein bcere0029_3480 [Bacillus cereus AH1272] gi|229154155|ref|ZP_04282279.1| hypothetical protein bcere0010_3570 [Bacillus cereus ATCC 4342] gi|228629291|gb|EEK85994.1| hypothetical protein bcere0010_3570 [Bacillus cereus ATCC 4342] gi|228739322|gb|EEL89759.1| hypothetical protein bcere0029_3480 [Bacillus cereus AH1272] gi|228776085|gb|EEM24448.1| hypothetical protein bthur0001_3690 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|324324489|gb|ADY19749.1| DNA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 64 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I R +SQ L + ++ Q + E + ++EVL + + F Sbjct: 3 NQIYELRTENNISQGALADKCKVSRQTINAIENNKYDPSLALAFRLAEVLGTTVDKLF 60 >gi|255280876|ref|ZP_05345431.1| DNA-binding protein [Bryantella formatexigens DSM 14469] gi|255268813|gb|EET62018.1| DNA-binding protein [Bryantella formatexigens DSM 14469] Length = 359 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 3/99 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR RR LG++QE++ E LG++ V K+EKG + ++ +L+ ++ F Sbjct: 7 IRERRKALGLTQEQVAERLGVSAPAVNKWEKGNTYPDITLAAALARLLKVDLNTLFCFRE 66 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 T+ E N+ MD ++ G + + ++++ Sbjct: 67 TLTQ---KEINSYMDEVTKEIGKNGVEAGFAMAESRIQE 102 >gi|225388847|ref|ZP_03758571.1| hypothetical protein CLOSTASPAR_02587 [Clostridium asparagiforme DSM 15981] gi|225045122|gb|EEG55368.1| hypothetical protein CLOSTASPAR_02587 [Clostridium asparagiforme DSM 15981] Length = 201 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 25/76 (32%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RIR R G + ++ G + + + E+ + L+ I+ L + Sbjct: 6 NRIREERKKKGYTLAQVARETGYSIGYISQLERNQKEPSLAALRKIAACLGCSEVYLIMG 65 Query: 77 SPTVCSDISSEENNVM 92 + S + + Sbjct: 66 QENETAVSHSPDQDTP 81 >gi|163746322|ref|ZP_02153680.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] gi|161380207|gb|EDQ04618.1| DNA-binding protein, putative [Oceanibulbus indolifex HEL-45] Length = 195 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R ++ + E L + V + E+ ++ + L+ I+EVL PIS F Sbjct: 17 LGADLRAIRKGRKLTLTDMAEALDRSVGWVSQVERDISTPSIADLRRIAEVLGVPISLLF 76 Query: 75 DVSPTVCSD 83 + + Sbjct: 77 GEATVPPEE 85 >gi|148379223|ref|YP_001253764.1| DNA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153934065|ref|YP_001383597.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153937268|ref|YP_001387146.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|153941321|ref|YP_001390589.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|168178665|ref|ZP_02613329.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|170754457|ref|YP_001780864.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|226948506|ref|YP_002803597.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|237794524|ref|YP_002862076.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|148288707|emb|CAL82789.1| putative transcriptional regulator [Clostridium botulinum A str. ATCC 3502] gi|152930109|gb|ABS35609.1| DNA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152933182|gb|ABS38681.1| DNA-binding protein [Clostridium botulinum A str. Hall] gi|152937217|gb|ABS42715.1| DNA-binding protein [Clostridium botulinum F str. Langeland] gi|169119669|gb|ACA43505.1| DNA-binding protein [Clostridium botulinum B1 str. Okra] gi|182671253|gb|EDT83227.1| DNA-binding protein [Clostridium botulinum NCTC 2916] gi|226842469|gb|ACO85135.1| DNA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|229263464|gb|ACQ54497.1| DNA-binding protein [Clostridium botulinum Ba4 str. 657] gi|295318667|gb|ADF99044.1| DNA-binding protein [Clostridium botulinum F str. 230613] gi|322805558|emb|CBZ03123.1| transcriptional regulator, MerR family, near polyamine transporter [Clostridium botulinum H04402 065] Length = 177 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 35/86 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R G++ ++L E ++ + E+ +N S LQ I EVL + Sbjct: 1 MQLGEKIKYYRKKKGLTIKELSELTNLSIGFISNLERDLNSPSVSNLQQICEVLGINLME 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTP 98 + + + + + Sbjct: 61 ILKSTEDKEYIVCKDSRSEIFSTDDK 86 >gi|14210845|gb|AAK57192.1|AF319998_11 putative transcriptional repressor [Stigmatella aurantiaca] Length = 119 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 40/122 (32%), Gaps = 3/122 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + +G R R LG++Q ++ E LGI + E+G L + VL Sbjct: 1 MNEELASQIGSAARDARTHLGLTQAEVAEKLGIAHMVYSRLERGKMLPSVPTLLRMCAVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 VS + + ++ + D + ++ + + + Sbjct: 61 HISADDLLGVSGEERGARLARGPRGEAEVPR---VRQLLGLARKMDEEKLDALVTVAQVL 117 Query: 127 VS 128 + Sbjct: 118 LR 119 >gi|21227029|ref|NP_632951.1| PbsX family transcriptional regulator [Methanosarcina mazei Go1] gi|20905349|gb|AAM30623.1| transcriptional regulator, PBSX family [Methanosarcina mazei Go1] Length = 67 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I++ R + ++QE L + +G+T Q + EKG ++ + + I F Sbjct: 3 NKIKVYRAMHDLTQENLADRVGVTRQTIHAIEKGKYDPSLDLAFKLARLFNANIEDIF 60 >gi|19551915|ref|NP_599917.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|62389574|ref|YP_224976.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] gi|41324909|emb|CAF19390.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032] Length = 124 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 6/83 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVLESPI 70 R++ R + G SQE+L + G++ + YE+ N S + +++ L+ P Sbjct: 15 SRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDVPP 74 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + I +E +D Sbjct: 75 IALMPAGSVPVAKICVDETAAID 97 >gi|94152474|ref|YP_581881.1| putative transcriptional regulator Cro/CI family [Cupriavidus metallidurans CH34] gi|93358844|gb|ABF12931.1| putative transcriptional regulator Cro/CI family [Cupriavidus metallidurans CH34] Length = 233 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 41/108 (37%), Gaps = 4/108 (3%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD--- 75 ++ R + ++Q ++ + LG++ ++E G V +++ +SE L + + Sbjct: 7 MKRARRLARLTQSEIAKRLGLSQSTYHRWESGEIEVPEAKVISLSEALGVSVEYLRGQPE 66 Query: 76 -VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + F + + I D + + +I+L Sbjct: 67 PFDIEGMDEQLPADRKNYGFAAIHFSTGCPPLLLPISDGERSRILIQL 114 >gi|325923357|ref|ZP_08185028.1| Helix-turn-helix protein [Xanthomonas gardneri ATCC 19865] gi|325546177|gb|EGD17360.1| Helix-turn-helix protein [Xanthomonas gardneri ATCC 19865] Length = 94 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 4/74 (5%) Query: 17 KRIRLRRMILGMSQEKLGECL----GITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R+R R + G+SQ LG + +V +YE GV++ +Q ++ L+ P+++ Sbjct: 12 RRLREARQVYGLSQRNLGIKAGLDDFVASTRVNRYETGVHQPDLQTIQRLANALDVPVAY 71 Query: 73 FFDVSPTVCSDISS 86 F+ + I Sbjct: 72 FYAEEDDLAQMILE 85 >gi|320658814|gb|EFX26482.1| putative phage repressor protein [Escherichia coli O55:H7 str. USDA 5905] Length = 238 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +RIR RR +G++Q+++ + +GI+ V K+E G ++ L +S++L + Sbjct: 19 ISERIRNRRKDVGLTQQQVAKAIGISRVSVTKWENGSSKPDGENLYLLSKLLSKSPEWIL 78 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 D + + + + +L Sbjct: 79 YGKD--GHDKADDLRLNQYPYISDNIARL 105 >gi|300789727|ref|YP_003770018.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299799241|gb|ADJ49616.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 247 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 11/108 (10%), Positives = 39/108 (36%), Gaps = 7/108 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN +R+R + G++ E++ + +G+ + V+++ I+ + Sbjct: 1 MPN-------ERLRDALLRNGLTLEQVAKAVGVDQKTVERWITKNRTPYPKHRHKIAAMA 53 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 ++ + S + ++ + + + + I + Sbjct: 54 RESETYLWPDSVAPERKAETAAAELVQVFPHRNAVPVELWDRLIKEAA 101 >gi|289191957|ref|YP_003457898.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] gi|288938407|gb|ADC69162.1| transcriptional regulator, XRE family [Methanocaldococcus sp. FS406-22] Length = 66 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R + ++QE L + LG++ Q + EKG I++ I F Sbjct: 3 NKLKIYRAMYNLTQEDLAKKLGVSRQTIIAIEKGKYDPSLKLAFKIAKFFGVKIEDIF 60 >gi|260596933|ref|YP_003209504.1| hypothetical protein CTU_11410 [Cronobacter turicensis z3032] gi|260216110|emb|CBA28884.1| hypothetical protein CTU_11410 [Cronobacter turicensis z3032] Length = 108 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 32/70 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++IR R M+ +L + + + E+G+ + +Q I+E L P++ Sbjct: 1 MKIGEKIRQIRKANQMTLSELALRVESDVGNLSRLERGMQGYSDTLIQKIAEALGVPVAE 60 Query: 73 FFDVSPTVCS 82 F + + Sbjct: 61 LFSSNEASDT 70 >gi|257455479|ref|ZP_05620712.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] gi|257447104|gb|EEV22114.1| helix-turn-helix domain protein [Enhydrobacter aerosaccus SK60] Length = 115 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 43/101 (42%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D VG+ + R+ M+Q ++ E LGI+ + + E+G + +L +++ + Sbjct: 6 DIDKVVGQSLARHRLACNMTQAQVAEALGISVDAISRMERGTISLNLPKLMQFAKLFKCK 65 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 +S F S + + +M+ + L + + Sbjct: 66 LSDFVIESSPLIDEQLQYLAKIMEPLDINQRNHLIKIIESM 106 >gi|153812109|ref|ZP_01964777.1| hypothetical protein RUMOBE_02505 [Ruminococcus obeum ATCC 29174] gi|149831764|gb|EDM86850.1| hypothetical protein RUMOBE_02505 [Ruminococcus obeum ATCC 29174] Length = 118 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 11/108 (10%), Positives = 35/108 (32%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + +P G+ I+ R S++ + + + I+ + + E + Sbjct: 1 MAKRPVPLYDFAAFGQAIKAARTARKESRKDVSDAMNISPRYLTNIENKGQQPSLQIFYE 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + FF + + + + + GL++ + Sbjct: 61 LVTRYNISVDQFFFPNRDTEKSTQRRQLDTLLDNISDKGLRIVTATAK 108 >gi|134045361|ref|YP_001096847.1| cupin 2 domain-containing protein [Methanococcus maripaludis C5] gi|132662986|gb|ABO34632.1| Cupin 2, conserved barrel domain protein [Methanococcus maripaludis C5] Length = 184 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R + +S E++ + L I+ + Q YE+G V AS L I+ E + Sbjct: 6 KEIAARVRELRELSDISIEEMADHLKISPEIYQHYEEGTCDVPASVLYEIAHKFEVDMGL 65 Query: 73 FFDVSPTV 80 T Sbjct: 66 LLTGEETR 73 >gi|298206675|ref|YP_003714854.1| transcriptional regulator, XRE family protein [Croceibacter atlanticus HTCC2559] gi|83849306|gb|EAP87174.1| transcriptional regulator, XRE family protein [Croceibacter atlanticus HTCC2559] Length = 67 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + G IR R G SQE+L + + E+ + + IS+ L+ I Sbjct: 7 HFGNNIRRLRKEQGFSQEELAHKADLHRTYIGMIERAEKNITLLNIGKISKALDVEIKEL 66 Query: 74 F 74 F Sbjct: 67 F 67 >gi|113461078|ref|YP_719146.1| hypothetical protein HS_0935 [Haemophilus somnus 129PT] gi|112823121|gb|ABI25210.1| conserved hypothetical protein [Haemophilus somnus 129PT] Length = 143 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 50/127 (39%), Gaps = 3/127 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + IR R M+QE + E L ++ K+E+G +++ RL I+++LE P+ Sbjct: 9 ENIRTFRENKKMTQEMMAERLNVSKTCYAKWERGESQIRIERLVQIAQILEVPLEDLMSS 68 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + NN + + L +I + II+ ++ + + Sbjct: 69 MNEGVLVFQNSNNNFSNSTNFSLALGNPALESEI---AHLRYIIDAKNELLDARDREIES 125 Query: 137 EEECMVE 143 ++ + Sbjct: 126 LKQNIKS 132 >gi|331672656|ref|ZP_08373445.1| transcriptional activator-regulatory protein [Escherichia coli TA280] gi|331070299|gb|EGI41665.1| transcriptional activator-regulatory protein [Escherichia coli TA280] Length = 251 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 29 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWLSSG 87 Query: 77 SPTVCSDISS 86 + Sbjct: 88 VGNMSDSTVQ 97 >gi|288353334|ref|YP_003422632.1| protein of unknown function DUF955 [Zymomonas mobilis subsp. mobilis ZM4] gi|285026735|gb|ADC33829.1| protein of unknown function DUF955 [Zymomonas mobilis subsp. mobilis ZM4] Length = 401 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 9/86 (10%) Query: 1 MVGNKKIPNPVDIN---------VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV 51 M+ + + + +R++ R + +SQE+LG+ +G++ Q + ++E+G Sbjct: 1 MIETNDNVSDILTARSNKDRRFLIPERLKDARKFMRLSQEELGKEIGVSRQAISQFERGD 60 Query: 52 NRVGASRLQHISEVLESPISFFFDVS 77 A L I VL+ PI FF Sbjct: 61 RNPDARTLVGIQSVLKQPIEFFITQE 86 >gi|253991420|ref|YP_003042776.1| hypothetical protein PAU_03947 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782870|emb|CAQ86035.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 88 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 3/83 (3%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N+K + VG R+ + R G+SQ + GI + + E G + +L Sbjct: 9 MKINRKSFASI---VGSRLMVARSHRGLSQNDIQNATGIDRATLSRIENGRQHISLYQLL 65 Query: 61 HISEVLESPISFFFDVSPTVCSD 83 I VLE PI F + Sbjct: 66 QILTVLEIPIEEFLRDIEVDNDN 88 >gi|251779846|ref|ZP_04822766.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084161|gb|EES50051.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 127 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 32/80 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R L +SQ+ L + + +T + +Y GV L I+ L + Sbjct: 13 IGQKIEERLQELNLSQKDLADRVNVTEATISRYISGVRNPRGEILSRIALTLRLTTDYLL 72 Query: 75 DVSPTVCSDISSEENNVMDF 94 + ++ S+ D Sbjct: 73 GNTSIEKNNESNINKKYNDI 92 >gi|296130851|ref|YP_003638101.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] gi|296022666|gb|ADG75902.1| transcriptional regulator, XRE family [Cellulomonas flavigena DSM 20109] Length = 198 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 2/102 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R + + GI+ + + E G+ R L ++ E I Sbjct: 14 VGPRLRALREQREATLADVAVVTGISVSTLSRLESGLRRPTLELLLPLARFHEVTIDELV 73 Query: 75 DVS--PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 DV + + + ++ + R + + + Sbjct: 74 DVPAGDDPRVPLHPTVRHGVTWVPLSRRTEGPRAYRLVYPPR 115 >gi|197337667|ref|YP_002157850.1| transcriptional regulator, MerR family [Vibrio fischeri MJ11] gi|197314919|gb|ACH64368.1| transcriptional regulator, MerR family [Vibrio fischeri MJ11] Length = 500 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A L+ I+ V Sbjct: 13 FLGTKIRNLRKRNHLTMEDLSTRCIRVDPENSPSVSYLSMIERGKRVPSADMLEVIATVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + S+F D P + Sbjct: 73 QKESSWFLDNEPEPQAITPD 92 >gi|206972991|ref|ZP_03233913.1| dna-binding protein [Bacillus cereus AH1134] gi|229194134|ref|ZP_04320999.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] gi|206731875|gb|EDZ49075.1| dna-binding protein [Bacillus cereus AH1134] gi|228589350|gb|EEK47304.1| Transcriptional regulator, MerR [Bacillus cereus ATCC 10876] Length = 184 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 1/129 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +IN+G++I + R G++ ++L E IT + + EKG+ L+ IS L + Sbjct: 3 NINIGEKIMIFRKGAGLTSKRLAELADITPSMLSQIEKGITNPSLQTLKLISAALNIALF 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 FF + T+ ++ N G D + ++ L+ SS + Sbjct: 63 NFF-LEDTITEELVVRANQRKKITFPESGNVSYELLSPNLDGSLELALMNLLPQTASSME 121 Query: 132 KYRTIEEEC 140 EE Sbjct: 122 PMAHKGEEI 130 >gi|157150600|ref|YP_001449787.1| DNA-binding protein [Streptococcus gordonii str. Challis substr. CH1] gi|157075394|gb|ABV10077.1| DNA-binding protein [Streptococcus gordonii str. Challis substr. CH1] Length = 70 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R+ M+Q L + +G+T Q + E G S I + L + F Sbjct: 12 KLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPSLSLCLAICKCLNKTLDQLF 68 >gi|160887303|ref|ZP_02068306.1| hypothetical protein BACOVA_05321 [Bacteroides ovatus ATCC 8483] gi|237713191|ref|ZP_04543672.1| transcriptional regulator [Bacteroides sp. D1] gi|262409416|ref|ZP_06085958.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|294647377|ref|ZP_06724970.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294809001|ref|ZP_06767723.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] gi|156107714|gb|EDO09459.1| hypothetical protein BACOVA_05321 [Bacteroides ovatus ATCC 8483] gi|229446849|gb|EEO52640.1| transcriptional regulator [Bacteroides sp. D1] gi|262352628|gb|EEZ01726.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|292637336|gb|EFF55761.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CC 2a] gi|294443726|gb|EFG12471.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides xylanisolvens SD CC 1b] gi|295087084|emb|CBK68607.1| Helix-turn-helix. [Bacteroides xylanisolvens XB1A] Length = 132 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 8/138 (5%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + +++GK+I R + GM+Q +LG+ LGIT Q V K E+ ++ RL+ Sbjct: 1 METIENIKSNHLHLGKKIERVRRLRGMTQTELGQLLGITKQAVSKMEQ-TEKIDDERLEK 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 I+ L + + + NN + + + N+ F + IE Sbjct: 60 IASALGVTTDGLKEYNEET---VLYNTNNFYENCGVKNAIGNNQTFNNFPIEQT----IE 112 Query: 122 LVRSIVSSEKKYRTIEEE 139 L ++ +K+ ++ Sbjct: 113 LFEKLLEKQKEQFESLKK 130 >gi|325000733|ref|ZP_08121845.1| transcriptional regulator, XRE family protein [Pseudonocardia sp. P1] Length = 84 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 38/72 (52%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 + R G++Q++LGE +G++ Q V + E G + ++ VLE+P+ F ++ Sbjct: 12 VAAARRRAGLTQKRLGELVGVSRQTVVEIEAGGYNPSTAVALRMAVVLETPVGELFALAD 71 Query: 79 TVCSDISSEENN 90 +D+ + ++ Sbjct: 72 GEVADLRARRDD 83 >gi|317133309|ref|YP_004092623.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315471288|gb|ADU27892.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 132 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 15/124 (12%), Positives = 40/124 (32%), Gaps = 5/124 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI M+ +L G+T V +++KG + + LQ I++ + + Sbjct: 5 NRIFQLMEAHEMNAAQLTREAGLTVGLVSQWKKGAQKPSSRNLQKIADYFHVSVDYLLTG 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR-----SIVSSEK 131 + S + + + ++ +++ ++ +K Sbjct: 65 KDGPSAPSLSLPEEDTVDSQLREVNFALSGEVHELTLNEKKDVLDFIKFVKAQRAAKDKK 124 Query: 132 KYRT 135 + R Sbjct: 125 EGRE 128 >gi|300814289|ref|ZP_07094561.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511556|gb|EFK38784.1| helix-turn-helix protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 67 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 27/64 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I R G++Q+++ +G T Q + K E G++ ++ I+ LE + + Sbjct: 4 NNILEIRKKKGITQKQIANAVGTTPQFISKLELGISNPSLTKAFEIARFLECGVEELYSF 63 Query: 77 SPTV 80 Sbjct: 64 EDDK 67 >gi|298674897|ref|YP_003726647.1| transcriptional regulator, XRE family [Methanohalobium evestigatum Z-7303] gi|298287885|gb|ADI73851.1| transcriptional regulator, XRE family [Methanohalobium evestigatum Z-7303] Length = 68 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 24/66 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R ++QE L + +G+T Q + E+G +S E I F Sbjct: 3 NNLKVWRAKKDITQEYLAKEMGVTRQTINAIERGKYDPSIQLAFKLSRFFECSIEDLFIF 62 Query: 77 SPTVCS 82 Sbjct: 63 EEADLE 68 >gi|296282095|ref|ZP_06860093.1| transcriptional regulator, Cro/CI family protein [Citromicrobium bathyomarinum JL354] Length = 63 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R SQ+ L E LG++ Q V E G I+EV I F Sbjct: 3 NRLKVLRAERNWSQQALAEELGVSRQSVNAIETGRYDPSLPLAFQIAEVFGLAIEEIF 60 >gi|227357001|ref|ZP_03841373.1| transcriptional regulator [Proteus mirabilis ATCC 29906] gi|227162879|gb|EEI47838.1| transcriptional regulator [Proteus mirabilis ATCC 29906] Length = 85 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 37/83 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VGKRI+ RR L +S K+ LG+T Q K E G ++ L I+ +L+ Sbjct: 3 INTVVGKRIQNRRKELNISSSKIALQLGMTEQYYLKLENGYTKITVDELICIAIILKVSP 62 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 S + S+ NN Sbjct: 63 QSLLLKSTVSQQNKDSQLNNYYH 85 >gi|254462881|ref|ZP_05076297.1| DNA-binding protein [Rhodobacterales bacterium HTCC2083] gi|206679470|gb|EDZ43957.1| DNA-binding protein [Rhodobacteraceae bacterium HTCC2083] Length = 219 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 37/83 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R ++ +L G++ + K E G S LQ ++ L P+ Sbjct: 30 LEVAIGREVRSFRKQKEITVAELASMTGLSIGMLSKIENGNTSPSLSTLQTLANALSVPL 89 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + FF + + ++ ++ Sbjct: 90 TSFFRRFEEQRTAVHTKAGEGVE 112 >gi|119873143|ref|YP_931150.1| XRE family transcriptional regulator [Pyrobaculum islandicum DSM 4184] gi|119674551|gb|ABL88807.1| transcriptional regulator, XRE family [Pyrobaculum islandicum DSM 4184] Length = 251 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 9/120 (7%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ +R +R GMS L + LG+T + V +YE+G Q + E+ + FD Sbjct: 125 GENLRRKREERGMSLGVLADRLGVTRETVYRYERGEIETPLRVAQKLIEMFGEDVVRKFD 184 Query: 76 VSPTVCSDISSEENNVMDFISTP---DGLQLNRYFIQI------DDVKVRQKIIELVRSI 126 ++ + N + + R + D + +K +EL ++ Sbjct: 185 INEKPAINQDEIRNREIVRNTYRLLESHPDAIRASDRTLLVSRNKDRREYEKTVELANAL 244 >gi|159897542|ref|YP_001543789.1| XRE family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890581|gb|ABX03661.1| transcriptional regulator, XRE family [Herpetosiphon aurantiacus ATCC 23779] Length = 491 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 12/125 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ G ++R R+ +S + ++ V + EKG ++ +++VL Sbjct: 6 INLIFGMKLRQARLEANLSLTEFAARAELSPSYVTEMEKGRKYPKPDKIVKMAQVLGKGY 65 Query: 71 SFF--------FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD--VKVRQKII 120 + S +F P+ +L F + D + I Sbjct: 66 DELVSIKLNPALAYLENMLSSPLLRHFPFEEFELDPN--ELVGLFTKAPDKASALLHAIW 123 Query: 121 ELVRS 125 E+ R Sbjct: 124 EIARQ 128 >gi|88803144|ref|ZP_01118670.1| helix-turn-helix family protein [Polaribacter irgensii 23-P] gi|88780710|gb|EAR11889.1| helix-turn-helix family protein [Polaribacter irgensii 23-P] Length = 74 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 34/69 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R IL ++QE+L +G++ Q + EK +S + + P++ FF++ Sbjct: 3 NRLKIERAILDLTQEELANKIGVSRQTISSIEKNRYVPSTVLSLRLSNLFKKPVNDFFEL 62 Query: 77 SPTVCSDIS 85 ++ Sbjct: 63 DENEKANTL 71 >gi|22537286|ref|NP_688137.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|25011245|ref|NP_735640.1| hypothetical protein gbs1196 [Streptococcus agalactiae NEM316] gi|77413033|ref|ZP_00789235.1| conserved hypothetical protein [Streptococcus agalactiae 515] gi|22534155|gb|AAN00010.1|AE014243_16 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] gi|23095669|emb|CAD46855.1| Unknown [Streptococcus agalactiae NEM316] gi|77160931|gb|EAO72040.1| conserved hypothetical protein [Streptococcus agalactiae 515] gi|319745147|gb|EFV97471.1| transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 65 Score = 42.1 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R+ +SQ L + +G+ Q + E ++E L++ ++ F Sbjct: 2 NRLREYRIKASISQLALAKSVGVARQTINLIENNKYNPSLDLCIRLAECLQTDLNTLFWD 61 Query: 77 S 77 S Sbjct: 62 S 62 >gi|311894296|dbj|BAJ26704.1| putative transcriptional regulator [Kitasatospora setae KM-6054] Length = 208 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG R+R R+ G+S +L G+ + E G L ++ L P+S Sbjct: 15 VGLRLRELRVARGLSLSELARRSGVGKATLSGLESGTRNPTLETLYALTTALGLPLS 71 >gi|296875924|ref|ZP_06899984.1| transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296433086|gb|EFH18873.1| transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 77 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 2 VGNKKIPNPVDINVGK--RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 + NK I + +V K ++++ R+ M+Q L + +G+T Q + E G S Sbjct: 1 MYNKVIKTRKEKHVAKNLKLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLC 60 Query: 60 QHISEVLESPISFFF 74 I + L+ + F Sbjct: 61 LAICKTLDKTLDQLF 75 >gi|261879523|ref|ZP_06005950.1| transcriptional regulator [Prevotella bergensis DSM 17361] gi|270333840|gb|EFA44626.1| transcriptional regulator [Prevotella bergensis DSM 17361] Length = 73 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++R R G+SQEKL E G+ + E+ + I+ L S F Sbjct: 15 HKVRTLREQQGLSQEKLAERAGLHRTYIGMVERLERNPSLVCIYKIANGLGVHASQLF 72 >gi|257084941|ref|ZP_05579302.1| predicted protein [Enterococcus faecalis Fly1] gi|256992971|gb|EEU80273.1| predicted protein [Enterococcus faecalis Fly1] Length = 279 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+ IR R G++Q+ + + + +T + E+ ++ I + L + F Sbjct: 3 GQTIRKIRKDKGLTQKDVCQGV-VTLSYYSRIERNISTPTIDIFMEIIKNLNVRLEEFM 60 >gi|228477619|ref|ZP_04062252.1| conserved domain protein [Streptococcus salivarius SK126] gi|228250763|gb|EEK09961.1| conserved domain protein [Streptococcus salivarius SK126] Length = 69 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 28/64 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R LG+SQ +L + +G++ Q + E ++++ L++ ++ F Sbjct: 4 VREFRKNLGLSQLELAKSIGVSRQTINMIENNKYNPTLELCLNLAKALDTDLNSLFWDEN 63 Query: 79 TVCS 82 Sbjct: 64 PNRD 67 >gi|256823110|ref|YP_003147073.1| XRE family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256796649|gb|ACV27305.1| transcriptional regulator, XRE family [Kangiella koreensis DSM 16069] Length = 175 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 35/91 (38%), Gaps = 5/91 (5%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF----- 73 +R R+ G SQE+L E G++ + +Q+ E+G + + ++ V E I+ F Sbjct: 3 VRKLRLKRGWSQEQLAELTGVSTRTIQRIERGQTKPSLETQKSLAAVFEVDIATFEPSLS 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 D + + ++ Sbjct: 63 MDSTGEPDMSTTDTNATEPKQQPDKPAIETV 93 >gi|254494052|ref|ZP_05107223.1| transcriptional regulator [Neisseria gonorrhoeae 1291] gi|226513092|gb|EEH62437.1| transcriptional regulator [Neisseria gonorrhoeae 1291] Length = 243 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +SQE L + ++ + E G N+ A+ + ++++L+ + Sbjct: 14 RLKEARKNKNLSQENLAKLAEVSQSTIAALESGRNK-KATNIAKLAKILDVSAFWLETGE 72 Query: 78 PTVCSDISSEENNVMD 93 + + + + + Sbjct: 73 GSRNTPVLINPDLPHE 88 >gi|78063409|ref|YP_373317.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77971294|gb|ABB12673.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 281 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 36/70 (51%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +++ P+ +G+ +R R + G+SQ L GI+ +Q+ E G + G L Sbjct: 1 MNASRREPHAPPHELGQLLRYWRDVRGVSQLDLSLDAGISQRQISFIESGRSVPGRDTLL 60 Query: 61 HISEVLESPI 70 +++ L+ P+ Sbjct: 61 TLAQTLDVPL 70 >gi|114564581|ref|YP_752095.1| transcriptional regulator, XRE family protein [Shewanella frigidimarina NCIMB 400] gi|114335874|gb|ABI73256.1| transcriptional regulator, XRE family protein [Shewanella frigidimarina NCIMB 400] Length = 68 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 29/65 (44%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + I G ++R +R LG+SQ+KL I + E+G + + ++EVL Sbjct: 3 DLAIQFGAKLRDKRKTLGISQDKLALLAEIDRSYAGRIERGEVNITLEKAYQLAEVLGCD 62 Query: 70 ISFFF 74 + Sbjct: 63 VRELL 67 >gi|303234360|ref|ZP_07320999.1| helix-turn-helix protein [Finegoldia magna BVS033A4] gi|302494476|gb|EFL54243.1| helix-turn-helix protein [Finegoldia magna BVS033A4] Length = 143 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 38/80 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R++ ++Q++L G+T ++ YE G +LQ ISE L+ IS + Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISALIN 63 Query: 76 VSPTVCSDISSEENNVMDFI 95 P +I + + Sbjct: 64 HEPNSIFEIMHIIFDYEKDM 83 >gi|228905139|ref|ZP_04069146.1| hypothetical protein bthur0014_62300 [Bacillus thuringiensis IBL 4222] gi|228854461|gb|EEM99112.1| hypothetical protein bthur0014_62300 [Bacillus thuringiensis IBL 4222] Length = 145 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 1/101 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK+I R +SQ L + LG + ++ YE+G L+ I++ E + Sbjct: 1 MLGKKIAELRKNQKLSQYDLADRLGFSRGKLANYEQGQREPDYDTLKKIADFFEVSTDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +S+ + + L + Q+++ + Sbjct: 61 L-GRTEKKELLSNMTPGLSEKEERDIAKDLEKTLEQLENSE 100 >gi|229062186|ref|ZP_04199510.1| Transcriptional regulator, Xre [Bacillus cereus AH603] gi|228717169|gb|EEL68845.1| Transcriptional regulator, Xre [Bacillus cereus AH603] Length = 190 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L + G++ + K E+G + + Sbjct: 1 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAQKTGVSKLTLGKIERGETNPTLAVI 60 Query: 60 QHISEVLESPISFFF 74 I++ L P+S Sbjct: 61 WKITKGLSIPLSRLM 75 >gi|228478235|ref|ZP_04062843.1| conserved domain protein [Streptococcus salivarius SK126] gi|228249914|gb|EEK09184.1| conserved domain protein [Streptococcus salivarius SK126] Length = 65 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 22/57 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R M+Q L E +G T Q + E G I + L+ + F Sbjct: 6 RLKAARAEHDMTQGDLAEAVGATRQTIGLIEAGKYNPSLGLCIAICKTLDRTLDQLF 62 >gi|187934570|ref|YP_001886346.1| hypothetical protein CLL_A2157 [Clostridium botulinum B str. Eklund 17B] gi|188589133|ref|YP_001921361.1| hypothetical protein CLH_1980 [Clostridium botulinum E3 str. Alaska E43] gi|251778914|ref|ZP_04821834.1| conserved domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|187722723|gb|ACD23944.1| conserved domain protein [Clostridium botulinum B str. Eklund 17B] gi|188499414|gb|ACD52550.1| conserved domain protein [Clostridium botulinum E3 str. Alaska E43] gi|243083229|gb|EES49119.1| conserved domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 69 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I++ R L M+Q++L E +GI+ Q + E+G + I + L + F Sbjct: 7 IKVARAQLDMTQKQLAEKVGISRQTMNAIEQGDYNPTIKLCRAICKALGKGLDDLFWEEE 66 Query: 79 TVC 81 Sbjct: 67 NDE 69 >gi|167632540|ref|ZP_02390867.1| DNA-binding protein [Bacillus anthracis str. A0442] gi|254685775|ref|ZP_05149634.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254723182|ref|ZP_05184970.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. A1055] gi|254738245|ref|ZP_05195948.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254742587|ref|ZP_05200272.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. Kruger B] gi|254752560|ref|ZP_05204596.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. Vollum] gi|254761076|ref|ZP_05213100.1| helix-turn-helix family DNA-binding protein [Bacillus anthracis str. Australia 94] gi|167532838|gb|EDR95474.1| DNA-binding protein [Bacillus anthracis str. A0442] Length = 66 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 27/66 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +I + R G +QE+L +G++ Q + EK I+ E P++ Sbjct: 1 MLHNKIVVCRAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDV 60 Query: 74 FDVSPT 79 FD Sbjct: 61 FDYLEE 66 >gi|149921945|ref|ZP_01910388.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149817207|gb|EDM76685.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 108 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 29/71 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+RL R G++Q +L G+ + + E + I++ L+ P+ Sbjct: 7 GARVRLLREGRGLTQARLARMAGVASDTISRVESARFSPSLDTMIKIADGLKLPLEALLG 66 Query: 76 VSPTVCSDISS 86 ++++ Sbjct: 67 EKFDQADELAA 77 >gi|149189925|ref|ZP_01868204.1| transcriptional regulator, HTH_3 family protein [Vibrio shilonii AK1] gi|148836240|gb|EDL53198.1| transcriptional regulator, HTH_3 family protein [Vibrio shilonii AK1] Length = 179 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 4/96 (4%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + + + + ++ R G+S + + G++ + + E+G + S L Sbjct: 1 MNDTVFKSQIAAH----LKQIRKHKGLSLDATAKLTGVSKAMLGQIERGESSPTISTLWK 56 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFIST 97 IS LE+ S FF P + + + ++T Sbjct: 57 ISSGLEASFSGFFANDPVLRDSEMTFPEDENMLVNT 92 >gi|114765017|ref|ZP_01444164.1| DNA binding protein, putative [Pelagibaca bermudensis HTCC2601] gi|114542564|gb|EAU45589.1| DNA binding protein, putative [Roseovarius sp. HTCC2601] Length = 189 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 12/87 (13%), Positives = 36/87 (41%), Gaps = 4/87 (4%) Query: 9 NPVDINVGK---RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + + +G+ R++ R G+S + + + G++ V + E+G + + L +++ Sbjct: 4 HDAEAVLGRIPGRLKEARQARGLSLDAVAKLSGVSRSMVSQIERGESNPTVATLWNLTRA 63 Query: 66 LESPISFFFD-VSPTVCSDISSEENNV 91 L+ + + P ++ Sbjct: 64 LQVDFAGLLELGQPERGIEVIRAAQAP 90 >gi|52784388|ref|YP_090217.1| hypothetical protein BLi00575 [Bacillus licheniformis ATCC 14580] gi|319648680|ref|ZP_08002891.1| hypothetical protein HMPREF1012_03930 [Bacillus sp. BT1B_CT2] gi|52346890|gb|AAU39524.1| putative protein [Bacillus licheniformis ATCC 14580] gi|317389099|gb|EFV69915.1| hypothetical protein HMPREF1012_03930 [Bacillus sp. BT1B_CT2] Length = 86 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R++ MSQ++L E +G++ Q + EKG I+E ++ F Sbjct: 16 ISNKVYEYRVLARMSQQELAEKVGVSKQTIFVMEKGNYVPTLLLAFRIAEFFNVDVNEIF 75 Query: 75 D 75 Sbjct: 76 T 76 >gi|327440177|dbj|BAK16542.1| predicted transcriptional regulator [Solibacillus silvestris StLB046] Length = 415 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RI+ R ++Q ++ +T + E G + L+ I+ L + F Sbjct: 4 LGERIKKLRKQKKLTQTEVVGE-RLTKGMLSLIENGKAQPSMESLRFIANQLNVDVDFLI 62 Query: 75 DV 76 D Sbjct: 63 DD 64 >gi|297156337|gb|ADI06049.1| putative DNA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 218 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 V R+R R G++ E G++ + + E + L ++ + +S Sbjct: 24 VAPRLRDLRRRSGLTLEAAARLAGLSPAHLSRLETARRQPSLPMLLALARTYGTTVSDLL 83 Query: 75 -DVSPTVCSDISSEENNVMD 93 +VSP + ++ + Sbjct: 84 GEVSPERDPILRADRTAAWE 103 >gi|291541946|emb|CBL15056.1| Predicted transcriptional regulators [Ruminococcus bromii L2-63] Length = 64 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +SQ++L E + ++ Q + EKG + I + L+ + F Sbjct: 5 RLKSARAAKDLSQQQLAELVKVSRQTISAIEKGDYNPTINLCIAICKALDKTLDELFWEE 64 >gi|325678575|ref|ZP_08158185.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324109625|gb|EGC03831.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 71 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 29/66 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R + Q ++ E L T Q +YEKG+ + R+ +++ I + + Sbjct: 4 RRLRDLREDHDLKQREVAEMLQTTQQVYSEYEKGIREIPLHRVITLAKYYGVSIDYIVGL 63 Query: 77 SPTVCS 82 + Sbjct: 64 TDVPEP 69 >gi|282883034|ref|ZP_06291635.1| toxin-antitoxin system, antitoxin component, Xre family [Peptoniphilus lacrimalis 315-B] gi|281297091|gb|EFA89586.1| toxin-antitoxin system, antitoxin component, Xre family [Peptoniphilus lacrimalis 315-B] Length = 133 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 47/125 (37%), Gaps = 3/125 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFFFDV 76 R++ R +SQ + +GI+ + + YE G + I+E+++ ++ + Sbjct: 6 RLKEFREKEKLSQADFAKMIGISTRTLVHYEDGERYPRDVEVYKKIAEIMDCDYNYLLEE 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIELVRSIVSSEKKYR 134 S + + + + L+ F +I D + R+ ++K+ + Sbjct: 66 SDEFLNRVYNMGGKRELEKARALTEGLSSLFAGGEISDEDKDAAFEAITRAYWEAKKENK 125 Query: 135 TIEEE 139 + Sbjct: 126 KYGRK 130 >gi|257485190|ref|ZP_05639231.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627429|ref|ZP_06460383.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646130|ref|ZP_06477473.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|320324681|gb|EFW80755.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320328789|gb|EFW84788.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330866701|gb|EGH01410.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330987378|gb|EGH85481.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010905|gb|EGH90961.1| Cro/CI family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 145 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R+ L +SQ LG G+ YE GV A L +S +++ Sbjct: 4 IGARLKKERLRLKLSQSALGAIGGVETNAQGNYENGVRSPRADYLSSVSN-AGVDVAYVV 62 Query: 75 DVSPTVCSDISSEEN 89 + IS+ + Sbjct: 63 TGLSSPAVTISNSQA 77 >gi|255525623|ref|ZP_05392557.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296185510|ref|ZP_06853920.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255510713|gb|EET87019.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296050344|gb|EFG89768.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 67 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 20/53 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +I+ R ++Q+ L E + ++ Q + E G I++ Sbjct: 3 NKIKQLRENFNLTQQDLAEKVDVSRQTIISLENGKYNPSILLAHKIAKSFNLS 55 >gi|239833118|ref|ZP_04681447.1| XRE family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239825385|gb|EEQ96953.1| XRE family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 128 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 3/120 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 G R+R R G++Q+++ L ++ + E G + LQ I Sbjct: 5 GIRLRELREERGVTQKEMAAALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIWDE-- 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + +S + +P +L + + R+ I L I ++ K+ R Sbjct: 63 AEELQNLAAVSHPRVVIDTSGLSPQATELANLLARNIRIIDRETIKHLSEEIEAARKRRR 122 >gi|225570756|ref|ZP_03779779.1| hypothetical protein CLOHYLEM_06859 [Clostridium hylemonae DSM 15053] gi|225160218|gb|EEG72837.1| hypothetical protein CLOHYLEM_06859 [Clostridium hylemonae DSM 15053] Length = 199 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 34/88 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR +R GM+ ++L E G++ + E+ N +Q I E + + Sbjct: 24 IGYSIRSQRRKKGMTLQQLSEATGLSIGYLSNLERNANSPTLVNIQKICEAFGTSLFSLL 83 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQ 102 +++ + E + L+ Sbjct: 84 EMNKEEDIIVRHNEREPIISEEHNMKLE 111 >gi|212696759|ref|ZP_03304887.1| hypothetical protein ANHYDRO_01301 [Anaerococcus hydrogenalis DSM 7454] gi|212676258|gb|EEB35865.1| hypothetical protein ANHYDRO_01301 [Anaerococcus hydrogenalis DSM 7454] Length = 82 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 36/73 (49%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++GK++R R +++++L E I+ + +++ EK N S L + E L+ + Sbjct: 6 HIGKKLRKLREEKNITRKELAEKTYISEETIRRIEKEENDPRISTLYSLCENLDVDLQLL 65 Query: 74 FDVSPTVCSDISS 86 F+ + C + Sbjct: 66 FNENKKNCDRLIE 78 >gi|19703890|ref|NP_603452.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714054|gb|AAL94751.1| Transcriptional regulator, MerR family [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 199 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N K+ ++ VG I+ R + + + GI+ + + EKG + ++ I Sbjct: 11 DNIKMNKEIN--VGITIKNIRKSKKLLLKDVALKCGISSSMLSQIEKGNANPSLNTIKSI 68 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 ++VLE P+ FF + + + IST Sbjct: 69 AQVLEVPLFKFFMDLEKEKYEFHLLKKDDRKIISTEY 105 >gi|38141545|emb|CAE53432.1| putative transcriptional regulator [Bacillus cereus] Length = 70 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R +Q+ L + +G+T Q + EKG + ++ V + + F + Sbjct: 5 NRVRELRARFRWTQQGLADAIGVTRQTIGLIEKGDYSPSVTMALKLAAVFQVTVEEVFYL 64 Query: 77 SPTV 80 Sbjct: 65 KGEE 68 >gi|323487614|ref|ZP_08092903.1| hypothetical protein HMPREF9474_04654 [Clostridium symbiosum WAL-14163] gi|323399071|gb|EGA91480.1| hypothetical protein HMPREF9474_04654 [Clostridium symbiosum WAL-14163] Length = 266 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++ E+L E ++ + YE + + L +++V E I + Sbjct: 5 IQERLKDLRVERGLTLEQLAEETHLSKSALGSYEGDNLKDISHHALIQLAKVYEVTIDYL 64 Query: 74 FDVSPTVCSDISSEEN 89 S T + + Sbjct: 65 LGRSKTKNHPNAELAD 80 >gi|313897846|ref|ZP_07831387.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312957381|gb|EFR39008.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 223 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL + Sbjct: 10 FLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPNEL 69 Query: 74 FDVS 77 Sbjct: 70 LSGE 73 >gi|313899162|ref|ZP_07832684.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] gi|312956040|gb|EFR37686.1| DNA-binding helix-turn-helix protein [Clostridium sp. HGF2] Length = 206 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R GM Q++L + +GI Q + K E+G+N L+ I EVL+ + Sbjct: 5 FLGNNIQTIRKYRGMKQQELADKIGINMQSLSKIERGLNYPAYDTLEKIMEVLDVTPNEL 64 Query: 74 FDVS 77 Sbjct: 65 LSGE 68 >gi|302555762|ref|ZP_07308104.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] gi|302473380|gb|EFL36473.1| transcriptional regulator [Streptomyces viridochromogenes DSM 40736] Length = 196 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 30/78 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R R G+S ++LG ++ + EK + L +++ L +S Sbjct: 16 LAHNVRAARTRAGLSLDELGRRAKVSKGALVGLEKAQGNPNFATLVRLADTLGVSVSALL 75 Query: 75 DVSPTVCSDISSEENNVM 92 + P + S + + Sbjct: 76 EGRPEERVRVVSADAVMP 93 >gi|298243400|ref|ZP_06967207.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297556454|gb|EFH90318.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 859 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 1/82 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R+ SQ+ + + L +T + ++E+GV L+ + + E + D+ Sbjct: 11 ERLRDARLRRHWSQQDVADQLNVTVVTISRWEQGVTTPSFYFLRQLCALFELSATEL-DL 69 Query: 77 SPTVCSDISSEENNVMDFISTP 98 P + + F+ P Sbjct: 70 DPHKETTSLDISVDQTPFLLDP 91 >gi|298292838|ref|YP_003694777.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296929349|gb|ADH90158.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 91 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 28/84 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ + R ++QE+L G + Q + E+G+ L I+ L Sbjct: 7 VGRNLARLRQAQKLTQEELAMRSGFSQQYLSDMERGLKNPTIITLYEIALALRVSHVALV 66 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + ++ + S Sbjct: 67 EPDGMADGAVAQPKRRRAAGSSRS 90 >gi|291531647|emb|CBK97232.1| Predicted transcriptional regulators [Eubacterium siraeum 70/3] Length = 136 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 49/113 (43%), Gaps = 3/113 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPISFFFDV 76 +++ R G++Q++ + LG++ + + YEKG + + ++E+L I++ Sbjct: 6 KVKKERRAKGLTQQQFADMLGVSLRTITNYEKGESYPKQREIYGKMAEILGVDINYLLTE 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 + + + + + ++ F + + + E++++I + Sbjct: 66 NEEFYINANEKYGATGAQQAKALMQEVTGLFAGGELDQ--DDMDEMMKAIQDA 116 >gi|282881086|ref|ZP_06289773.1| cupin domain protein [Prevotella timonensis CRIS 5C-B1] gi|281304890|gb|EFA96963.1| cupin domain protein [Prevotella timonensis CRIS 5C-B1] Length = 184 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 28/71 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R++ R +L + E++ + I+ + +K E G RL IS+ + Sbjct: 6 KQIGQRLKGLREVLNIPAEEIAQLCNISTEHYKKIEAGEADPSLYRLTRISKHYGIALDV 65 Query: 73 FFDVSPTVCSD 83 S Sbjct: 66 LLFGEEPRMSS 76 >gi|226357088|ref|YP_002786828.1| XRE family transcriptional regulator [Deinococcus deserti VCD115] gi|226319078|gb|ACO47074.1| putative transcriptional regulator, XRE family [Deinococcus deserti VCD115] Length = 129 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 24/66 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R+R R G+ + + E I+ + E+G LQ ++ + Sbjct: 1 MKLHERLRELRSERGLRLKDVAEVAQISVPYLSDLERGRTNPSLETLQTLAGAYNITVHD 60 Query: 73 FFDVSP 78 + Sbjct: 61 LLEGVE 66 >gi|163791473|ref|ZP_02185880.1| hypothetical protein CAT7_00700 [Carnobacterium sp. AT7] gi|159873238|gb|EDP67335.1| hypothetical protein CAT7_00700 [Carnobacterium sp. AT7] Length = 306 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 12/113 (10%), Positives = 38/113 (33%), Gaps = 1/113 (0%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +++ +G ++ R G +Q+++ + + K E S+ I + ++ Sbjct: 3 DINVPIGSTLKKIRENKGYTQQEISD-HKMARSTYTKVESNDITPTLSKYLAILDHMDMS 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 F + ++ + + I + V+++ +L Sbjct: 62 HEEFIFILNDRKLGEKETILHLFKQLEKNLTRESVNQIINKGETLVKERYDQL 114 >gi|160934670|ref|ZP_02082056.1| hypothetical protein CLOLEP_03543 [Clostridium leptum DSM 753] gi|156866123|gb|EDO59495.1| hypothetical protein CLOLEP_03543 [Clostridium leptum DSM 753] Length = 108 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RI R+ G+S+ ++ LG + + G+ I E + F Sbjct: 9 FIRNRITQLRLQKGVSEYQMSYDLGHSRSYMYNISSGIALPPMLEFLQICEYFGITPAQF 68 Query: 74 FDVS 77 FD S Sbjct: 69 FDES 72 >gi|187477387|ref|YP_785411.1| transcriptional regulator [Bordetella avium 197N] gi|115421973|emb|CAJ48494.1| putative transcriptional regulator [Bordetella avium 197N] Length = 177 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 3/93 (3%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + PV +V +R R G+SQ L G++ + + E G + ++L I+ L Sbjct: 1 MSEPVLEHVSANVRRLRAERGLSQTALAARAGLSRRMIVGLESGEANISLAKLGLIATAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 + F ++ + + + S Sbjct: 61 DVN---FIELVSSPGQTPGALTWRGLHPGSQAH 90 >gi|70729981|ref|YP_259721.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] gi|68344280|gb|AAY91886.1| DNA-binding protein [Pseudomonas fluorescens Pf-5] Length = 187 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 1/106 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M V +V +R R G+SQ L E ++ + + E G V L Sbjct: 1 MHKENVQRASVLQHVSLNVRRLRNAAGLSQSALAEKSNVSRRMLVAIEAGEKNVSLGTLD 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 ++E L+ S +P E I L L + Sbjct: 61 RVAEALDVAFSDLIQ-APESRDSSRINELAWAGAIPGSKALLLAKA 105 >gi|26989844|ref|NP_745269.1| Cro/CI family transcriptional regulator [Pseudomonas putida KT2440] gi|24984749|gb|AAN68733.1|AE016505_6 transcriptional regulator, Cro/CI family [Pseudomonas putida KT2440] Length = 180 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R LGM+ E L E G+T + K E+G+N + ++ L + F Sbjct: 4 RLKLLRKKLGMTLEMLAEKTGMTKSYLSKVERGLNTPSIAAALKLARALNVNVEELFAEE 63 Query: 78 PTVCS 82 S Sbjct: 64 QAGQS 68 >gi|319946286|ref|ZP_08020526.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747668|gb|EFV99921.1| XRE family transcriptional regulator [Streptococcus australis ATCC 700641] Length = 157 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 31/73 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +I+ R+ L ++Q++L E ++ + E + L I + LE S FF Sbjct: 57 IGSQIKSYRIKLKLTQQELAERSELSLPFMNLVENDKRNLSVETLLKILDGLEISPSEFF 116 Query: 75 DVSPTVCSDISSE 87 S SE Sbjct: 117 LPFSEDISPDLSE 129 >gi|315651586|ref|ZP_07904603.1| transcriptional regulator [Eubacterium saburreum DSM 3986] gi|315486145|gb|EFU76510.1| transcriptional regulator [Eubacterium saburreum DSM 3986] Length = 75 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R +SQ++L + +G++ Q + EKG I L+ + F Sbjct: 7 RLKSARAAKDLSQQQLADMVGVSRQTINAIEKGDYNPTIRLCLSICYALDKSLDELFWDE 66 Query: 78 PTVCSDIS 85 T + Sbjct: 67 NTEKLPDT 74 >gi|300173268|ref|YP_003772434.1| XRE family transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299887647|emb|CBL91615.1| Transcriptional regulator, XRE family,putative [Leuconostoc gasicomitatum LMG 18811] Length = 71 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 21/66 (31%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R +SQ+ + LG+T Q + E G I+ + F Sbjct: 3 NNLEKLRKEHKVSQQDFAQYLGVTRQTISSLENGRYNPSILLAMKIARYFGKSVENIFIY 62 Query: 77 SPTVCS 82 + + Sbjct: 63 TEESDN 68 >gi|295109642|emb|CBL23595.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 117 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 37/122 (30%), Gaps = 16/122 (13%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 G+ I+ R S++K+ + + I+ + + E + + + Sbjct: 12 KAFGEAIKEARKGRKESRKKVSDEMYISPRYLANIENNGQHPSLQIFFELIQRYNISVDQ 71 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 F SP + + ++D +S + + I EK+ Sbjct: 72 FLFDSPAGKDTNRRQLDALLDDMSDTG----------------IRIVTATAEEIAKVEKE 115 Query: 133 YR 134 R Sbjct: 116 GR 117 >gi|255527402|ref|ZP_05394276.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296184943|ref|ZP_06853354.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255508893|gb|EET85259.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296050725|gb|EFG90148.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 176 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 6/108 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R G +Q+ LGE ++ + + E + L++I L +PI + Sbjct: 1 MIGNAIKEAREEKGFTQKYLGEASCLSQKTISAIETCRRSITQENLKNICNELNNPIVYM 60 Query: 74 FDVSPTVCSD------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 ++ + + +L I KV Sbjct: 61 ETINEMCGDAFSLQWLDGDAADLHRASVKEKVMEELKEAIESIHSAKV 108 >gi|134288575|ref|YP_001110814.1| hypothetical protein SPSV3_gp14 [Salmonella phage SETP3] gi|125631940|gb|ABN47343.1| hypothetical protein [Salmonella phage SETP3] gi|126015308|gb|ABN70685.1| hypothetical protein [Salmonella phage SETP5] gi|126015310|gb|ABN70686.1| hypothetical protein [Salmonella phage SETP12] Length = 72 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISF 72 +G RI RR +GM Q +L G++ + G +V ++ HI++ L + Sbjct: 5 ELGARIERRRKEIGMGQTELAFKAGVSQSLITHLATGRVCKVDCFKIFHIADALGVDPRW 64 Query: 73 F 73 Sbjct: 65 L 65 >gi|84388954|ref|ZP_00991162.1| hypothetical protein V12B01_09741 [Vibrio splendidus 12B01] gi|84377018|gb|EAP93890.1| hypothetical protein V12B01_09741 [Vibrio splendidus 12B01] Length = 70 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + + G ++R R G+SQ+KL I V + E+G + ++ +++ L+ Sbjct: 3 DLAVKFGMKLREVRKKNGISQDKLALIADIDRSYVGRIERGEVNITLDKVYCLAQALKCN 62 Query: 70 ISFFF 74 ++ Sbjct: 63 VTELL 67 >gi|193070021|ref|ZP_03050968.1| repressor protein C2 [Escherichia coli E110019] gi|260867149|ref|YP_003233551.1| putative phage repressor protein [Escherichia coli O111:H- str. 11128] gi|192956618|gb|EDV87074.1| repressor protein C2 [Escherichia coli E110019] gi|257763505|dbj|BAI35000.1| putative phage repressor protein [Escherichia coli O111:H- str. 11128] gi|323175391|gb|EFZ60986.1| helix-turn-helix family protein [Escherichia coli 1180] Length = 224 Score = 42.1 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 41/89 (46%), Gaps = 2/89 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +RIR RR +G++Q+++ + +GI+ V K+E G ++ L +S++L + Sbjct: 5 ISERIRNRRKDVGLTQQQVAKAIGISRVSVTKWENGSSKPDGENLYLLSKLLSKSPEWIL 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 D + + + + +L Sbjct: 65 YGKD--GHDKADDLRLNQYPYISDNIARL 91 >gi|330939126|gb|EGH42553.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 149 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R+ L +SQ LG G+ YE GV A L IS +++ Sbjct: 4 IGPRLKKERLRLKLSQSALGAIGGVETNAQGNYENGVRSPRADYLSSISN-AGVDVAYVV 62 Query: 75 DVSPTVCS 82 + Sbjct: 63 TGLSATRN 70 >gi|329117060|ref|ZP_08245777.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326907465|gb|EGE54379.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 183 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 4/109 (3%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + R G+SQ++L + LGI+ Q + E + L+ I+ + + F Sbjct: 8 NLIRLRKQKGLSQKELAQELGISSQTISNIENQSAYPTFTNLEKIAGFFNASPTDLF--- 64 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 I E+ + + + I +++ + L+ + Sbjct: 65 -GTPQQIQLEKAVFETDEYSDKASTILKASNAISELEYDKNFQNLINDL 112 >gi|325263048|ref|ZP_08129783.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] gi|324031441|gb|EGB92721.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. D5] Length = 118 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 50/133 (37%), Gaps = 20/133 (15%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P +G+++ R ++Q++L + ++ +Q+ EKG L+ +++VL Sbjct: 1 MPIDDLTALGQKMLEARKNKELTQQELSDLSHVSVKQIANIEKGKMNPSYLILRVLAKVL 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII----EL 122 + + D +G+ + ++R ++ E Sbjct: 61 HISLDTLIN----------------PDISLEDEGVNQMKMLYSTCPPEMRDTLLHHTQET 104 Query: 123 VRSIVSSEKKYRT 135 V+ + +K+ T Sbjct: 105 VKELTELSEKFET 117 >gi|298241977|ref|ZP_06965784.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] gi|297555031|gb|EFH88895.1| transcriptional regulator, XRE family [Ktedonobacter racemifer DSM 44963] Length = 452 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 26/70 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G++Q L E L + Q V +E+G + + E+ + SP Sbjct: 7 LKKARRERGLTQVNLAEQLHVGVQTVSSWERGKRAPQPEVRKRLCEIFRKRLCEILGKSP 66 Query: 79 TVCSDISSEE 88 ++ Sbjct: 67 EELGLPPFDQ 76 >gi|289673099|ref|ZP_06493989.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae FF5] Length = 149 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R+ L +SQ LG G+ YE GV A L IS +++ Sbjct: 4 IGPRLKKERLRLKLSQSALGAIGGVETNAQGNYENGVRSPRADYLSSISN-AGVDVAYVV 62 Query: 75 DVSPTVCS 82 + Sbjct: 63 TGLSATRN 70 >gi|288960685|ref|YP_003451025.1| transcriptional regulator [Azospirillum sp. B510] gi|288912993|dbj|BAI74481.1| transcriptional regulator [Azospirillum sp. B510] Length = 220 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 27/69 (39%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +IR R L ++ L GI+ + K E G + LQ ++ L PI+ Sbjct: 36 ALGVQIRSLRRHLDLTVADLAAAAGISTGMLSKIENGQISPSLASLQALAGALNVPITAL 95 Query: 74 FDVSPTVCS 82 F Sbjct: 96 FASFEEKRG 104 >gi|284055653|pdb|3JXB|C Chain C, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9c gi|284055654|pdb|3JXB|D Chain D, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9c gi|284055657|pdb|3JXC|L Chain L, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9t In The Presence Of Tl+ gi|284055658|pdb|3JXC|R Chain R, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9t In The Presence Of Tl+ gi|284055661|pdb|3JXD|L Chain L, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9c In The Presence Of Rb+ gi|284055662|pdb|3JXD|R Chain R, Crystal Structure Of The P22 C2 Repressor Protein In Complex With Synthetic Operator 9c In The Presence Of Rb+ Length = 67 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +S+ L+ + Sbjct: 6 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLK 65 Query: 76 VS 77 Sbjct: 66 GD 67 >gi|228962123|ref|ZP_04123603.1| hypothetical protein bthur0005_54930 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797559|gb|EEM44692.1| hypothetical protein bthur0005_54930 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 66 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 25/59 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R R G++Q +L L + + KYE G++ L + + + I F S Sbjct: 8 LREIRKEKGLTQNQLANLLDLDKTSISKYESGIHSPSLRVLVLYANIFGTQIENFLTRS 66 >gi|257894935|ref|ZP_05674588.1| phage CI repressor [Enterococcus faecium 1,231,408] gi|294620540|ref|ZP_06699842.1| Transcriptional regulator, xre family [Enterococcus faecium U0317] gi|121309458|dbj|BAF44068.1| hypothetical protein [Enterococcus faecium] gi|257831314|gb|EEV57921.1| phage CI repressor [Enterococcus faecium 1,231,408] gi|291599794|gb|EFF30797.1| Transcriptional regulator, xre family [Enterococcus faecium U0317] Length = 105 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 28/66 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + K I+ +R+ ++QE L E L ++ + + +E G L +++ + + Sbjct: 1 MTISKVIKQKRIEKQLTQEDLAEMLLVSKKTISNWENGRTIPDTENLIQFAKLFDLSLDN 60 Query: 73 FFDVSP 78 Sbjct: 61 ILLGEE 66 >gi|66046278|ref|YP_236119.1| helix-hairpin-helix DNA-binding motif-containing protein [Pseudomonas syringae pv. syringae B728a] gi|63256985|gb|AAY38081.1| Helix-turn-helix motif [Pseudomonas syringae pv. syringae B728a] Length = 149 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R+ L +SQ LG G+ YE GV A L IS +++ Sbjct: 4 IGPRLKKERLRLKLSQSALGAIGGVETNAQGNYENGVRSPRADYLSSISN-AGVDVAYVV 62 Query: 75 DVSPTVCS 82 + Sbjct: 63 TGLSATRN 70 >gi|15896567|ref|NP_349916.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|15026404|gb|AAK81256.1|AE007829_9 Predicted transcriptional regulator [Clostridium acetobutylicum ATCC 824] gi|325510728|gb|ADZ22364.1| transcriptional regulator [Clostridium acetobutylicum EA 2018] Length = 69 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 24/65 (36%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R +SQE+L +G+T Q + E+ I+ I FD S Sbjct: 4 RIQELRKQHKLSQEELALAVGVTRQTITSLEREKYTASLVLAYKIAHYFGLTIEEIFDFS 63 Query: 78 PTVCS 82 Sbjct: 64 EIEEE 68 >gi|150018990|ref|YP_001311244.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905455|gb|ABR36288.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 183 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 37/105 (35%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + ++ R +S KL + G++ + + E+G + + + I+ L P Sbjct: 3 LNNIIAGNLKRLRNERQLSLGKLSDICGVSKVMLGQIERGESNPTINTIWKIAGGLRVPY 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + D I E++ + + + ++ Sbjct: 63 TSLIDEPIKNDLLIKKEDSRHQESPDNKYRVYCYFASNSNRNFEL 107 >gi|150017576|ref|YP_001309830.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904041|gb|ABR34874.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 343 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 41/89 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR R ++QE++ + L ++ V K+E GV+ + L ++ VL+ ++ Sbjct: 1 MMISEVIRHYRKKENLTQEQVADYLNVSTPAVNKWENGVSYPDITLLPPLARVLKIDVNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGL 101 + + + + ++ +G+ Sbjct: 61 LLAFNEELTDTEVKKLTKEVGETASKEGI 89 >gi|310826601|ref|YP_003958958.1| hypothetical protein ELI_1005 [Eubacterium limosum KIST612] gi|308738335|gb|ADO35995.1| hypothetical protein ELI_1005 [Eubacterium limosum KIST612] Length = 266 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 + +R++ R+ G++ E+L E ++ + YE + L +++ E + + Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEGDNFKDISHYALIELAKFYEVTVDYL 64 Query: 74 FDVSPTVCSDISSEENNV 91 S T + + Sbjct: 65 LGRSQTKNHPNADLADLH 82 >gi|241894930|ref|ZP_04782226.1| hypothetical protein HMPREF0877_0200 [Weissella paramesenteroides ATCC 33313] gi|241871938|gb|EER75689.1| hypothetical protein HMPREF0877_0200 [Weissella paramesenteroides ATCC 33313] Length = 171 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I+ R G++Q +L +G++ + EK N + I++ + + Sbjct: 3 NKIKELRKSNGLTQAQLASKIGVSQPTLSLLEKDGNS--LEDMLPIAQYFGVSLDYLVSG 60 >gi|239983669|ref|ZP_04706193.1| XRE family transcriptional regulator [Streptomyces albus J1074] gi|291455478|ref|ZP_06594868.1| transcriptional regulator [Streptomyces albus J1074] gi|291358427|gb|EFE85329.1| transcriptional regulator [Streptomyces albus J1074] Length = 479 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 3/110 (2%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD-VSPTVCSDISS 86 M+Q ++ LGI+ + E+ + A L I+EV FF + + +++ + Sbjct: 25 MNQVEMARALGISTSYANQIEQSQRPLTAPVLLRIAEVFGVDPEFFSEAEEDRLAAELRA 84 Query: 87 EENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + PD + D +V + ++ L R + ++ + Sbjct: 85 ALADEACGVPLPDPQEAAEAAR--DHPEVARALVALHRRYRDTTEQAAAL 132 >gi|229027921|ref|ZP_04184076.1| Transcriptional regulator Xre [Bacillus cereus AH1271] gi|229170925|ref|ZP_04298528.1| Transcriptional regulator Xre [Bacillus cereus MM3] gi|228612591|gb|EEK69810.1| Transcriptional regulator Xre [Bacillus cereus MM3] gi|228733435|gb|EEL84262.1| Transcriptional regulator Xre [Bacillus cereus AH1271] Length = 67 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RIR R + G +QE + LG++ + + E+G + +++ L+ + Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSVEELM 65 >gi|212696735|ref|ZP_03304863.1| hypothetical protein ANHYDRO_01277 [Anaerococcus hydrogenalis DSM 7454] gi|212676272|gb|EEB35879.1| hypothetical protein ANHYDRO_01277 [Anaerococcus hydrogenalis DSM 7454] Length = 51 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 27/51 (52%) Query: 28 MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 M+Q +L + LG+ V +E+ N + ++E+ + P+S+FFD Sbjct: 1 MTQAQLAKKLGVAPTTVSSWERNDNNPLMDNITLMAEIFDVPVSYFFDKKD 51 >gi|218779200|ref|YP_002430518.1| XRE family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218760584|gb|ACL03050.1| transcriptional regulator, XRE family [Desulfatibacillum alkenivorans AK-01] Length = 196 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 29/79 (36%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N ++ + K + + R MSQ+ L + G++ + E G S + Sbjct: 1 MTKNDEVLQQTKYALAKNVAVGRKAHNMSQQALADASGVSKSTIAAIETGKGEPSLSTIV 60 Query: 61 HISEVLESPISFFFDVSPT 79 I+ L+ F T Sbjct: 61 AIACTLQCSPQMLFFDDST 79 >gi|194467261|ref|ZP_03073248.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194454297|gb|EDX43194.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 74 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 26/61 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G+SQ KL + +G+ Q + E ++++ L + ++ F Sbjct: 2 NRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYNPSLELCINLAKALNTDLNSLFWE 61 Query: 77 S 77 Sbjct: 62 E 62 >gi|91710591|gb|ABE50519.1| N-acetylglutamate synthase / N-acetylglutamate kinase [Methylobacillus flagellatus KT] Length = 521 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 39/100 (39%), Gaps = 5/100 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G IR RR L M+ ++L + + + E+G V + L+ + L+ ++ Sbjct: 1 MALGNAIRKRRKALNMTLQELARKVNANSGNLSRIERGAQGVSETMLRKLCTALDCTAAY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + SD S + ++ + R+F Sbjct: 61 LY-----AQSDAESGHSTNTSRLTLHQPQEFVRWFRSAAP 95 >gi|13473823|ref|NP_105391.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14024574|dbj|BAB51177.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 122 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 4/119 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISF-- 72 G+R+R R G+SQ+ + +G++ + E G + +Q I Sbjct: 5 GERLRALRHERGVSQKDMAAAIGVSAAYLSALEHGRRGAPTWTLIQKIIGYFNIIWDDAE 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + ++ +T L ++D+ ++R+ I +R+ + K Sbjct: 65 ELARLAEASHPRVKLDTSGLNPAATELANLLAENIEKLDEAELRR-ITASIRAALGRLK 122 >gi|325957642|ref|YP_004293054.1| hypothetical protein LAC30SC_10090 [Lactobacillus acidophilus 30SC] gi|325334207|gb|ADZ08115.1| hypothetical protein LAC30SC_10090 [Lactobacillus acidophilus 30SC] Length = 286 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 1/101 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLG-ITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+ ++ R+ G +Q++ + ++ K EK ++R+ A L + P+ Sbjct: 1 MTIGELLKEYRITQGKNQKEFTDSGMIVSQSYYSKVEKNIHRITADSLIELLHYNNIPLD 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 FF + + + + QI + Sbjct: 61 EFFGRINQNDKIQHQQVKDFNNMLVDAYYDSDVNKIKQIKE 101 >gi|323486406|ref|ZP_08091730.1| hypothetical protein HMPREF9474_03481 [Clostridium symbiosum WAL-14163] gi|323400218|gb|EGA92592.1| hypothetical protein HMPREF9474_03481 [Clostridium symbiosum WAL-14163] Length = 145 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 9/83 (10%), Positives = 24/83 (28%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 ++ ++ + G+T + ++ G + A+ LQ I++ + + Sbjct: 7 QLLQKHNVTSYRVAKEAGVTQTALSNWKSGRSTPSATTLQKIADYFGVSVDYLMTGKDEP 66 Query: 81 CSDISSEENNVMDFISTPDGLQL 103 I L Sbjct: 67 KEKSPELTARDERDIGRRLEKAL 89 >gi|310639686|ref|YP_003944444.1| transcriptional regulator [Paenibacillus polymyxa SC2] gi|309244636|gb|ADO54203.1| Predicted transcriptional regulator [Paenibacillus polymyxa SC2] Length = 116 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 41/96 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R L ++QEKL E + ++ + + E+G + L ++ L S + + Sbjct: 6 LGTRIRQERQRLNLTQEKLAERVDLSHAYIGQIERGERSLSLETLVKLANELGSTVDYLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + V + + + + Q+ I++ Sbjct: 66 SEAVEVKDEALINKIKQTIISRSLEEQQMALEMIEL 101 >gi|304440189|ref|ZP_07400079.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371238|gb|EFM24854.1| DNA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 182 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 34/81 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G +++L R+ ++Q++L + +T + + E+ + + L I E L + Sbjct: 5 MDIGNKLKLIRISQNLTQDELAKRSELTKGFISQVERNLTSPSVTTLIDILEALGTSPIE 64 Query: 73 FFDVSPTVCSDISSEENNVMD 93 FF + + Sbjct: 65 FFKDDEAKFFFSEDDYFENTN 85 >gi|291540444|emb|CBL13555.1| Helix-turn-helix [Roseburia intestinalis XB6B4] Length = 122 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 15/114 (13%), Positives = 40/114 (35%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTV 80 R LG + + GIT ++ G + +L+ I+ L++ + + Sbjct: 7 ELRDSLGYRDSDVAKGTGITKSTFSDWKNGRSIPKDEKLKKIALFLDTSVDYLRYGDQAP 66 Query: 81 CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 ++ E + I L++ + + + ++ ++ E+K Sbjct: 67 QYYLNDETAKMAQEIFDNKELRMLFDAARDAAPEDLEAAHTMILALKRKERKNI 120 >gi|291297562|ref|YP_003508840.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290566782|gb|ADD39747.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 183 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 3/111 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES--PISF 72 +G IR R +S +L + G++ + + E+G+ + A LQ I+ L+ P+ + Sbjct: 6 IGGFIRDLRRNAKVSLRQLADQAGVSNPYLSQIERGLRKPSAEVLQQIANALKVSTPLMY 65 Query: 73 FFDVSPTVCSDISSEENNVMDFIST-PDGLQLNRYFIQIDDVKVRQKIIEL 122 + D + T L + R ++L Sbjct: 66 LRAGLLKTKDGQGTLATIAGDPLLTARQKQTLTEIYEAFRRENARDAGLDL 116 >gi|229489883|ref|ZP_04383739.1| putative repressor protein [Rhodococcus erythropolis SK121] gi|229323233|gb|EEN88998.1| putative repressor protein [Rhodococcus erythropolis SK121] Length = 174 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 7/113 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+R R+ G++ + L +G + Q V +E G + L+ I++ L+ IS + Sbjct: 37 RLRELRVKAGLTPDDLSVRIGSSRQSVSHWETGRSTPAPPVLKQIADELDVSISVLVPIP 96 Query: 78 PT-------VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 ++ +P L ++ + + I L Sbjct: 97 DNRLRMGDLRVRAGLTQIQAAEQLSISPTSLAEIEKGMKPVNEDRLEAIAGLY 149 >gi|228965452|ref|ZP_04126539.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] gi|228794283|gb|EEM41800.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar sotto str. T04001] Length = 126 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 2/96 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R MSQ +L + + Q+ K EKG+ + L +SE L ++ F Sbjct: 6 LGIIIKELRKKKNMSQSELCHGI-CSQSQISKIEKGIIYPSSILLYQLSERLGIDPNYIF 64 Query: 75 DVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQ 109 ++ + D + + +L + Sbjct: 65 ALTKNKKIKYIENVKCVMRDCVKQKEYNELYEIVKK 100 >gi|229170554|ref|ZP_04298202.1| hypothetical protein bcere0007_54700 [Bacillus cereus AH621] gi|228612903|gb|EEK70080.1| hypothetical protein bcere0007_54700 [Bacillus cereus AH621] Length = 69 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 27/63 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R G +QE+L + +G++ Q + EK I+ + E I+ FD Sbjct: 7 NKIVVCRAEKGWTQEELAKRVGVSRQTIATLEKNKYNPSLILAFKIANIFEKSITDVFDY 66 Query: 77 SPT 79 Sbjct: 67 QEE 69 >gi|187940005|gb|ACD39140.1| hypothetical protein PACL_0352 [Pseudomonas aeruginosa] Length = 112 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 44/110 (40%), Gaps = 1/110 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ + +R R G++Q ++ E +G++ + + +E G + + + +++ L Sbjct: 1 MNIPQTLRTARKNRGLTQREVAELVGVSIEAYKGWEGGRHHPRSENVAPLAQALGISTDE 60 Query: 73 F-FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + S+ N D + QL + ++++ E Sbjct: 61 LMMEAQQRSISEDLRALFNAADKLPDDKKRQLRTAIKGMLLAISQEQLDE 110 >gi|161508087|ref|YP_001578054.1| hypothetical protein lhv_1911 [Lactobacillus helveticus DPC 4571] gi|160349076|gb|ABX27750.1| hypothetical protein lhv_1911 [Lactobacillus helveticus DPC 4571] Length = 289 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 11/130 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R+ G++Q++ + + ++ K EK +R+ A L I E P+ Sbjct: 8 MTIGELLKEERIKKGLTQKQFADSI-VSVSYYSKVEKNEHRITAEDLITILEHNNIPLCS 66 Query: 73 FFDVS----------PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 FF + D I +Q D + Sbjct: 67 FFKELSLKSNFQHEYKIDLEAKVMDAYYHSDKILLEKIIQDLEKSSSTDKTDDILIVKGW 126 Query: 123 VRSIVSSEKK 132 + S+ E++ Sbjct: 127 LESLKEDEEE 136 >gi|154149824|ref|YP_001403442.1| XRE family transcriptional regulator [Candidatus Methanoregula boonei 6A8] gi|153998376|gb|ABS54799.1| transcriptional regulator, XRE family [Methanoregula boonei 6A8] Length = 77 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R ++Q++L + +G+ + + E+G +++ L + I F Sbjct: 4 KIKECRARYSLTQDELAKKVGVRRETIVFLEQGKYNPSLKLAHDVAKTLHTTIDELFIFD 63 Query: 78 PTVCSDISS 86 S Sbjct: 64 DDEPGPESR 72 >gi|145294858|ref|YP_001137679.1| hypothetical protein cgR_0805 [Corynebacterium glutamicum R] gi|140844778|dbj|BAF53777.1| hypothetical protein [Corynebacterium glutamicum R] Length = 124 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 6/83 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVLESPI 70 R++ R + G SQE+L + G++ + YE+ N S + +++ L+ P Sbjct: 15 SRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDVPP 74 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + I +E +D Sbjct: 75 IVLMPAGSVPVAKICVDETAAID 97 >gi|167648317|ref|YP_001685980.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167350747|gb|ABZ73482.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 69 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G++Q L E +G+T + + E GV ++ L + + F + Sbjct: 10 LKAARTEAGLTQADLAELVGVTRKTINTVENGVFVPSTVLSLKLARALGTSVEALFQLPE 69 >gi|90020028|ref|YP_525855.1| transcriptional regulator [Saccharophagus degradans 2-40] gi|89949628|gb|ABD79643.1| transcriptional regulator [Saccharophagus degradans 2-40] Length = 184 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 25/68 (36%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G IR R G S + L + G++ + + E + L ++ + + Sbjct: 5 HIGTFIRNYRQTNGESLQALADRSGVSRSMIAQIESNQKSPTVTTLAKLAGAMSISLGDL 64 Query: 74 FDVSPTVC 81 + S Sbjct: 65 VEPSKHTT 72 >gi|331090228|ref|ZP_08339116.1| hypothetical protein HMPREF1025_02699 [Lachnospiraceae bacterium 3_1_46FAA] gi|330402174|gb|EGG81746.1| hypothetical protein HMPREF1025_02699 [Lachnospiraceae bacterium 3_1_46FAA] Length = 346 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 39/81 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR +R L ++QE++ E LG++ V K+EKG + L ++ +L+ ++ Sbjct: 1 MKINQIIREKRKELSLTQEQIAELLGVSTPAVNKWEKGSTYPDITLLPALARLLKIDLNT 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 + + N +D Sbjct: 61 LLSFNEDLTDIEIENFVNELD 81 >gi|288870444|ref|ZP_06114118.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288867175|gb|EFC99473.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 70 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 26/69 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 V K+ G++ ++ + GI ++ G ++ +L +++ P+ + Sbjct: 2 KKVYKKFAELLFQRGLTAYRVSKDTGIPANTFTDWKNGRSKPKFDKLLILAKYFGVPVEY 61 Query: 73 FFDVSPTVC 81 F D Sbjct: 62 FADERKEDA 70 >gi|299822624|ref|ZP_07054510.1| transcriptional regulator [Listeria grayi DSM 20601] gi|299816153|gb|EFI83391.1| transcriptional regulator [Listeria grayi DSM 20601] Length = 128 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +R+ L R G S+ + LG+ +E G+ + +I+E+ + + + Sbjct: 6 QRLTLLRENQGWSKAETARRLGLKAPSTYGNWEYGIREPDLQMVANIAELYDVSVDYLIG 65 Query: 76 VSPTVCSD 83 + Sbjct: 66 QDDETDAQ 73 >gi|229162457|ref|ZP_04290418.1| transcriptional regulator/TPR domain protein [Bacillus cereus R309803] gi|228620936|gb|EEK77801.1| transcriptional regulator/TPR domain protein [Bacillus cereus R309803] Length = 421 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 8/115 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+RIR R+ +Q ++ + + + + E G + S L+ I++ L+ +F Sbjct: 1 MNIGERIRQIRIHKEFTQGEVVSGV-CSITYLSRIENGQIKPSNSVLKKIAKNLDIDYNF 59 Query: 73 FFDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 V E D I + L +++ D I+ L+++ Sbjct: 60 LVGVDYEDIEAKILEICNRYKNDNIISSKDLSSLELYVRDTD-----SILLLLKA 109 >gi|218709348|ref|YP_002416969.1| putative transcriptional regulator [Vibrio splendidus LGP32] gi|218322367|emb|CAV18518.1| putative transcriptional regulator [Vibrio splendidus LGP32] Length = 101 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 4/72 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPI 70 + +R++ R +SQ+ LGE +G+ + +YEKG + L+ I++ L P+ Sbjct: 7 IPERLKQARKKAKLSQKALGESIGMDASSASPRMNQYEKGKHAPDVQTLKLIADELGVPL 66 Query: 71 SFFFDVSPTVCS 82 ++F + Sbjct: 67 NYFLCEDESSAE 78 >gi|254415140|ref|ZP_05028902.1| hypothetical protein MC7420_2566 [Microcoleus chthonoplastes PCC 7420] gi|196177946|gb|EDX72948.1| hypothetical protein MC7420_2566 [Microcoleus chthonoplastes PCC 7420] Length = 72 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 26/69 (37%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ V +R R +G+SQE+L G+ V E+ + L+ ++ L Sbjct: 3 LNQVVASNLRKLRQEIGISQEELAGKCGLHRTYVGAIERSERNITLQTLEKLAVSLGVSP 62 Query: 71 SFFFDVSPT 79 + Sbjct: 63 LDLLKENSD 71 >gi|188585373|ref|YP_001916918.1| transcriptional regulator [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350060|gb|ACB84330.1| transcriptional regulator [Natranaerobius thermophilus JW/NM-WN-LF] Length = 66 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R+ ++QE+L + + T Q + E G I +VL + F Sbjct: 6 KIKSARLEQELTQEQLAKRVKATRQTISLIEAGKYNPSLKLCLAICKVLGKTLDDLFWEE 65 Query: 78 P 78 Sbjct: 66 D 66 >gi|182418405|ref|ZP_02949699.1| helix-turn-helix domain protein [Clostridium butyricum 5521] gi|237666621|ref|ZP_04526606.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377787|gb|EDT75331.1| helix-turn-helix domain protein [Clostridium butyricum 5521] gi|237657820|gb|EEP55375.1| helix-turn-helix domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 435 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 1/71 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L + IT Q+ E G + L++++ L + + + Sbjct: 6 LGEKIKRRRKQLNMTLKDLAKD-RITPGQISLVESGRSNPSVDLLEYLASTLNTTVEYLM 64 Query: 75 DVSPTVCSDIS 85 + + IS Sbjct: 65 ESEESQAEKIS 75 >gi|154503571|ref|ZP_02040631.1| hypothetical protein RUMGNA_01395 [Ruminococcus gnavus ATCC 29149] gi|260589920|ref|ZP_05855833.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|153795671|gb|EDN78091.1| hypothetical protein RUMGNA_01395 [Ruminococcus gnavus ATCC 29149] gi|260539727|gb|EEX20296.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] Length = 128 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 2/99 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISFF-FDV 76 IR +R LG+SQ +L E LG + Q + + EK G+ + + L ++++ PI ++ Sbjct: 12 IRKKRKELGISQSELSEKLGTSQQTISRIEKAGIENIPCNLLIKLADIFHVPIDILIYEE 71 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 + S E + + + L ++ + +V Sbjct: 72 QNNLFSSQGEELWEIYKQLDEANKTTLLTLGRRLSEAQV 110 >gi|125623644|ref|YP_001032127.1| hypothetical protein llmg_0793 [Lactococcus lactis subsp. cremoris MG1363] gi|124492452|emb|CAL97394.1| CI [Lactococcus lactis subsp. cremoris MG1363] gi|300070411|gb|ADJ59811.1| hypothetical protein LLNZ_04110 [Lactococcus lactis subsp. cremoris NZ9000] Length = 165 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 38/102 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R +SQ+ L + +G T + ++E G + + +L Sbjct: 8 ERLKEARKAANLSQQALADKIGRTKSTISRWESGERNPKMFEMVELENILGIQARDLMFG 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + I + + V ++ P ++ + D + ++ Sbjct: 68 EQEITDTILPKISQVSSELTKPRQEKVLNFATAQLDEQKLEQ 109 >gi|119967867|ref|YP_950697.1| putative cI-like repressor [Staphylococcus phage PH15] gi|112790031|gb|ABI21751.1| putative cI-like repressor [Staphylococcus phage PH15] gi|329736005|gb|EGG72280.1| putative HTH-type transcriptional regulator AnsR [Staphylococcus epidermidis VCU045] Length = 107 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 13/101 (12%), Positives = 36/101 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R ++ +G+ + +YE G ++ + I+ L Sbjct: 6 EIGKLIKQLRKENNINLTDFATKIGVNKSTLSRYENGSRKIPMEDIAEIANALNVTPESL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + ++I ++ ++ + ++ Y I + Sbjct: 66 LLKNKQPETEIQHRAAHLEAELTDDEWQRVLDYADYIRSKR 106 >gi|73668235|ref|YP_304250.1| XRE family transcriptional regulator [Methanosarcina barkeri str. Fusaro] gi|72395397|gb|AAZ69670.1| transcriptional regulator, XRE family [Methanosarcina barkeri str. Fusaro] Length = 74 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 27/70 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 I++ R + ++QE L E +G+T Q + EKG ++ + + I F Sbjct: 3 NNIKVYRAMHDLTQENLAEKVGVTRQTIHAIEKGKYDPSLELAFKLARLFDVRIEDIFLY 62 Query: 77 SPTVCSDISS 86 + Sbjct: 63 EDRKARNSER 72 >gi|54295976|ref|YP_122288.1| hypothetical protein plpp0134 [Legionella pneumophila str. Paris] gi|53755808|emb|CAH17311.1| hypothetical protein plpp0134 [Legionella pneumophila str. Paris] Length = 191 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 30/74 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + K ++ R G S +K G++ + + E+ + S L I+ ++ Sbjct: 4 ISKRIAKTLKSLRQERGWSLDKTALETGVSKAMLGQIEREESSPTISTLWKIASGFQASF 63 Query: 71 SFFFDVSPTVCSDI 84 S F + S ++ Sbjct: 64 SSFIEDSLDNSTNP 77 >gi|73748389|ref|YP_307628.1| DNA-binding protein [Dehalococcoides sp. CBDB1] gi|147669169|ref|YP_001213987.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432437|ref|YP_003462310.1| XRE family transcriptional regulator [Dehalococcoides sp. GT] gi|73660105|emb|CAI82712.1| DNA-binding protein [Dehalococcoides sp. CBDB1] gi|146270117|gb|ABQ17109.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] gi|288946157|gb|ADC73854.1| transcriptional regulator, XRE family [Dehalococcoides sp. GT] Length = 67 Score = 42.1 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R ++Q +L E +G++ Q + EKG +++ L + I F Sbjct: 6 RIKELRARYNLTQSELAETVGVSRQTMLYLEKGKYNPSLILAHKVAKALHADIEDVF 62 >gi|329732814|gb|EGG69161.1| DNA-binding helix-turn-helix protein [Staphylococcus aureus subsp. aureus 21193] Length = 77 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ +R + G SQE+ L ++ Q V K+E N L +S++ + Sbjct: 1 MKLAEAIKEQRELKGWSQEESANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGITLDH 60 Query: 73 FFDVS 77 Sbjct: 61 LIKGD 65 >gi|326441778|ref|ZP_08216512.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 301 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 9/118 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G + P +G R+ R GM+ E G+ G++ V +YE+ V + ++ Sbjct: 13 SGEENEPTARRRQLGFRLLALREQRGMTAEHAGDLAGLSKATVSRYERAKGNVRWNHVEM 72 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN---RYFIQIDDVKVR 116 + + ++ + V D P +L R ++D R Sbjct: 73 LCRAYGAS------DEEREALVDLAKNSKVKDGWWVPYATKLAQPMRLLYAVEDEATR 124 >gi|322411791|gb|EFY02699.1| transcriptional regulator [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 158 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 12/95 (12%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 1 MIGDNIKSLRHTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + ++ + L++ + Sbjct: 61 VGEDKMLTPVEDYQLTLKIEVLKERGAAILSQLYR 95 >gi|319782930|ref|YP_004142406.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168818|gb|ADV12356.1| helix-turn-helix domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 187 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 33/86 (38%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 N + +G+RI R++ S +L E G++ + E+G A+ L IS Sbjct: 5 ANEISSTIGRRIHAERVMRDWSLAELAEHSGVSKAMLSTIERGKTSPTAALLVRISSAFG 64 Query: 68 SPISFFFDVSPTVCSDISSEENNVMD 93 +S + + E + + Sbjct: 65 MTLSTLIARAELQGGRLLREADQPVW 90 >gi|227485416|ref|ZP_03915732.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236546|gb|EEI86561.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 143 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 38/87 (43%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R++ ++Q++L G+T ++ YE G +LQ ISE L+ IS + Sbjct: 4 GEKLKKLRLMRNLTQKELAIKSGLTDAAIRNYELGNRSPSKEQLQKISEALDCDISALIN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 P +I + + Sbjct: 64 HEPNSIFEIMHIIFDYEKDMKFRPLAD 90 >gi|283795716|ref|ZP_06344869.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291077396|gb|EFE14760.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 266 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 + +R++ R+ G++ E+L E ++ + YE + L +++ E + + Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEGDNFKDISHYALIELAKFYEVTVDYL 64 Query: 74 FDVSPTVCSDISSEEN 89 S T + + Sbjct: 65 LGRSQTKNHPNADLAD 80 >gi|218900177|ref|YP_002448588.1| DNA-binding protein [Bacillus cereus G9842] gi|218541881|gb|ACK94275.1| DNA-binding protein [Bacillus cereus G9842] Length = 73 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R+R R +SQ LG+ +G + Q + E+G I+++ + Sbjct: 1 MKLQNRVRELRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFNVAVEE 60 Query: 73 FFDVSPTVCSDIS 85 F + D Sbjct: 61 IFTLVEGEEDDEE 73 >gi|218900380|ref|YP_002448791.1| DNA-binding protein [Bacillus cereus G9842] gi|218541269|gb|ACK93663.1| DNA-binding protein [Bacillus cereus G9842] Length = 63 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R G+SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 2 NNVKQYRKSEGLSQLELAKKVNVARQTINLIENKKYNPSLALCIELAKALKTDLNSLFWE 61 Query: 77 SP 78 Sbjct: 62 GD 63 >gi|167924579|ref|ZP_02511670.1| transcriptional regulator, XRE family protein [Burkholderia pseudomallei BCC215] Length = 81 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 26/61 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ IR RR+ L +SQE L I + K E+G V L I+ L S Sbjct: 16 AVGRSIRARRLELDISQEALANIADIDRSHMGKIERGERNVTLLNLVKIARALSCRPSDL 75 Query: 74 F 74 Sbjct: 76 L 76 >gi|163796042|ref|ZP_02190005.1| transcriptional regulator, XRE family protein [alpha proteobacterium BAL199] gi|159178797|gb|EDP63335.1| transcriptional regulator, XRE family protein [alpha proteobacterium BAL199] Length = 526 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR RR LG++Q + + +GI+ + E + S L+ I+E+L+ Sbjct: 7 GYRIRERRRQLGLTQAGVAKSVGISPSYLNLIEANKRAIAGSILRRITELLDLDPETLTG 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 + D E + + GL Sbjct: 67 RTEQRMVDDLEELAA--EPMLRDLGLD 91 >gi|153954897|ref|YP_001395662.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855349|ref|YP_002472471.1| hypothetical protein CKR_2006 [Clostridium kluyveri NBRC 12016] gi|146347755|gb|EDK34291.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569073|dbj|BAH07057.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 71 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 29/68 (42%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +I + R+++ R L +SQ +L G++ Q + E G A +S+ L+ Sbjct: 4 NIKLNNRLKVARAELNISQGQLASMAGVSRQTISSIETGQYCPSAKLALILSKCLQKNFE 63 Query: 72 FFFDVSPT 79 F + Sbjct: 64 DLFYLEEE 71 >gi|152998212|ref|YP_001343047.1| helix-turn-helix domain-containing protein [Marinomonas sp. MWYL1] gi|150839136|gb|ABR73112.1| helix-turn-helix domain protein [Marinomonas sp. MWYL1] Length = 69 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + VG+ IR +R G+SQE L I + + E+G V L I+ +E Sbjct: 4 IAKEVGELIRSQRKARGISQEALAAKSKIDRSYMGRIERGEVNVTLKALWDIAASMEIS 62 >gi|86739487|ref|YP_479887.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86566349|gb|ABD10158.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 167 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 5/100 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ--VQKYEKGVNRVGASRLQHISEVLESPI 70 VG R+R R+ G+S + + + ++ V YE+G + +L ++ P+ Sbjct: 7 KAVGARLRAIRIQQGLSLQGVEQKSRGRWKTAAVGSYERGDRMISVHQLSELAGFYGVPV 66 Query: 71 SFFF---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 S D P + N + PD L R + Sbjct: 67 SALLPNEDQLPPRERRPRTVLNLEKLSEAPPDSSALVRRW 106 >gi|324116784|gb|EGC10698.1| peptidase S24 [Escherichia coli E1167] Length = 229 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 7 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWLSSG 65 Query: 77 SPTVCSDISS 86 + Sbjct: 66 VGNMSDSTVQ 75 >gi|323343951|ref|ZP_08084178.1| DNA-binding protein [Prevotella oralis ATCC 33269] gi|323095770|gb|EFZ38344.1| DNA-binding protein [Prevotella oralis ATCC 33269] Length = 184 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 28/71 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R++ R +L + E++ E GI+ + K E G RL IS+ + Sbjct: 6 KQIGQRLKGLRDVLDIPAEEVAELCGISLEHYLKIEAGEADPSVYRLTKISKRYGIDLDV 65 Query: 73 FFDVSPTVCSD 83 + Sbjct: 66 LLFGEEPRMNA 76 >gi|253751715|ref|YP_003024856.1| antidote epsilon protein [Streptococcus suis SC84] gi|253755571|ref|YP_003028711.1| antidote epsilon protein [Streptococcus suis BM407] gi|251816004|emb|CAZ51621.1| antidote epsilon protein [Streptococcus suis SC84] gi|251818035|emb|CAZ55824.1| antidote epsilon protein [Streptococcus suis BM407] Length = 158 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 32/95 (33%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 1 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + ++ I L++ + Sbjct: 61 VGEDKMLTPVEDYHLTLKVEVIKERGAAILSQLYR 95 >gi|238793272|ref|ZP_04636899.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC 29909] gi|238727440|gb|EEQ18967.1| hypothetical protein yinte0001_37050 [Yersinia intermedia ATCC 29909] Length = 193 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Query: 7 IPNPVDIN---VG---KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 +P+ D +G IR R LG++ +L + GI + + E G L Sbjct: 5 MPDNSDHAATPIGLLSASIRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGNPSLETLW 64 Query: 61 HISEVLESPISFF 73 ++ L+ P+S Sbjct: 65 SLAMALDVPVSRL 77 >gi|229130504|ref|ZP_04259460.1| Transcription regulator, probable-related protein [Bacillus cereus BDRD-Cer4] gi|228652843|gb|EEL08725.1| Transcription regulator, probable-related protein [Bacillus cereus BDRD-Cer4] Length = 68 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 24/62 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R +SQ +L + + + Q + E + +++ L++ ++ F Sbjct: 7 NNVKQYRKSEDLSQLELAKKVNVARQTINLIENNKYNPSLALCIELAKALKTDLNSLFWE 66 Query: 77 SP 78 Sbjct: 67 GD 68 >gi|255092519|ref|ZP_05321997.1| transcriptional regulator [Clostridium difficile CIP 107932] Length = 126 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 10/110 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RIR R +SQ GE LG++ + E + ++ +V + Sbjct: 6 ISTRIRKIRKDANLSQPAFGEKLGVSKDVISNIEYNRVEPKPLFINYMCDVFNVNKEWLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + + F Y ++ K+++ +I L + Sbjct: 66 NGVGNMYISTEDDILLGEAFA----------YITTCENEKLKKIVINLCK 105 >gi|182412902|ref|YP_001817968.1| XRE family transcriptional regulator [Opitutus terrae PB90-1] gi|177840116|gb|ACB74368.1| transcriptional regulator, XRE family [Opitutus terrae PB90-1] Length = 83 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 2 VGNKKIPN-----PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 + +KK P + +G I R G+SQ++L G+ + E+G + Sbjct: 1 MASKKDPRTPAQIKLAKQLGAAIAEARKKAGLSQDELAYRCGLHRAYMGFVEQGRYSITV 60 Query: 57 SRLQHISEVLESPISFFFDV 76 + L + L++ S D Sbjct: 61 ATLVQVCSELDAKPSEILDE 80 >gi|167760209|ref|ZP_02432336.1| hypothetical protein CLOSCI_02582 [Clostridium scindens ATCC 35704] gi|167662092|gb|EDS06222.1| hypothetical protein CLOSCI_02582 [Clostridium scindens ATCC 35704] Length = 119 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 35/99 (35%), Gaps = 1/99 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + +G+ I+ R GM++E+L +G + +Q E Sbjct: 1 MDERNNDFDFDFMPIGQAIKKAREARGMTREQLAGIIGYAPRHIQSIENEGQHPSIELFI 60 Query: 61 HISEVLESPIS-FFFDVSPTVCSDISSEENNVMDFISTP 98 + + + + + F S + + +D ++ Sbjct: 61 QLITMFDVSVDEYIFPEKEVKKSSVRRRLDAQLDKLNDR 99 >gi|165869157|ref|ZP_02213817.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167637409|ref|ZP_02395689.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170684835|ref|ZP_02876060.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|170704913|ref|ZP_02895378.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|177649881|ref|ZP_02932882.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190565074|ref|ZP_03017995.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227813967|ref|YP_002813976.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229602589|ref|YP_002867433.1| DNA-binding protein [Bacillus anthracis str. A0248] gi|164715883|gb|EDR21400.1| DNA-binding protein [Bacillus anthracis str. A0488] gi|167514916|gb|EDR90282.1| DNA-binding protein [Bacillus anthracis str. A0193] gi|170129768|gb|EDS98630.1| DNA-binding protein [Bacillus anthracis str. A0389] gi|170671095|gb|EDT21833.1| DNA-binding protein [Bacillus anthracis str. A0465] gi|172083833|gb|EDT68892.1| DNA-binding protein [Bacillus anthracis str. A0174] gi|190564391|gb|EDV18355.1| DNA-binding protein [Bacillus anthracis Tsiankovskii-I] gi|227007141|gb|ACP16884.1| DNA-binding protein [Bacillus anthracis str. CDC 684] gi|229266997|gb|ACQ48634.1| DNA-binding protein [Bacillus anthracis str. A0248] Length = 65 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R G +QE+L +G++ Q + EK I+ E P++ FD Sbjct: 3 NKIVVCRAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANAFEKPLTDVFDY 62 Query: 77 SPT 79 Sbjct: 63 LEE 65 >gi|148977928|ref|ZP_01814481.1| putative transcriptional regulator [Vibrionales bacterium SWAT-3] gi|145962874|gb|EDK28146.1| putative transcriptional regulator [Vibrionales bacterium SWAT-3] Length = 100 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLE 67 D + R++ R ++Q+ LG +G+ + YEKG + L+ ++E L+ Sbjct: 4 DNPIPARLKAARKKAKITQKDLGVKIGMEQSSASGRMNHYEKGRHVPDIGTLERMAEELD 63 Query: 68 SPISFFFDVSP 78 P+++FF S Sbjct: 64 VPLNYFFCRSE 74 >gi|331002826|ref|ZP_08326340.1| hypothetical protein HMPREF0491_01202 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413315|gb|EGG92683.1| hypothetical protein HMPREF0491_01202 [Lachnospiraceae oral taxon 107 str. F0167] Length = 104 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 30/62 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R GM+Q +LGE +G+ Q + KYE+ + V LQ IS V E + + Sbjct: 4 IRKLRQSKGMTQRELGEVIGVKQQTICKYERANSNVSWDILQKISAVFEVSLDELIEEDL 63 Query: 79 TV 80 Sbjct: 64 EK 65 >gi|328947475|ref|YP_004364812.1| hypothetical protein Tresu_0574 [Treponema succinifaciens DSM 2489] gi|328447799|gb|AEB13515.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 91 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + V ++IRL R+ G+SQ ++ + E G N+ + I+EVLE+ Sbjct: 6 IHRYVIEKIRLARISKGLSQLEVCTRGNFSQSFYTHVESGRNQPSLMTIIRIAEVLETNP 65 Query: 71 SFFFDVSPTVCSDISSEE 88 FF S +E Sbjct: 66 REFFPESEIKSKSEIKKE 83 >gi|313905044|ref|ZP_07838414.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313470114|gb|EFR65446.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 139 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 43/125 (34%), Gaps = 11/125 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++G+ +++ R LG +Q ++ + L T + E G + L + + I Sbjct: 20 HLGETLKILRKHLGKTQREIADDLNCTPGYISNMETGRTALSTRVLSYYARKSGMTIDDI 79 Query: 74 FDV-----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS-IV 127 + E + + L R + + + R L+R+ + Sbjct: 80 LAGKTPGYDRSYADIQLQEAVTHLSYTKKKCLLDTIRLWKNAEAEEER-----LIRAELE 134 Query: 128 SSEKK 132 E++ Sbjct: 135 KGEEE 139 >gi|307243939|ref|ZP_07526064.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] gi|306492761|gb|EFM64789.1| DNA-binding helix-turn-helix protein [Peptostreptococcus stomatis DSM 17678] Length = 227 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 29/79 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ +SQ L + I + Y G ++ ++++LE + Sbjct: 8 NRLKAAMKNKSISQYSLSKISCINRGTISSYMSGKYLPKQDKIFILADILEVNPEWLACN 67 Query: 77 SPTVCSDISSEENNVMDFI 95 S ++ + ++ D + Sbjct: 68 SDSMDRIDLNTQSTFDDGL 86 >gi|294787896|ref|ZP_06753140.1| transcriptional regulator, XRE family [Simonsiella muelleri ATCC 29453] gi|294484189|gb|EFG31872.1| transcriptional regulator, XRE family [Simonsiella muelleri ATCC 29453] Length = 72 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++R R I G SQ++L + + + Q + E ++ L++ ++ F Sbjct: 4 NQVRQYRQIKGWSQQELAQRIEVARQTINLIENNRYNPTLLLCIKLAHALDTDLNSLF 61 >gi|289433695|ref|YP_003463567.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169939|emb|CBH26479.1| DNA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 67 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q L L ++ Q + EKG I++ E + F + Sbjct: 5 NRVKALREEKGIAQNDLASILEVSRQTIHAIEKGKYNPSLELSLKIAKYFELTVEEIFQL 64 Query: 77 SPT 79 Sbjct: 65 EEE 67 >gi|257875054|ref|ZP_05654707.1| predicted protein [Enterococcus casseliflavus EC20] gi|257809220|gb|EEV38040.1| predicted protein [Enterococcus casseliflavus EC20] Length = 135 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 27/62 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R+ MSQE++ + +T + +E G + L +S + + Sbjct: 1 MTIGEALKNHRVTQQMSQEEVATKILVTRTSISNWETGKTVPDSLNLLKLSTLYGCSVDE 60 Query: 73 FF 74 Sbjct: 61 LL 62 >gi|257440012|ref|ZP_05615767.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] gi|257197364|gb|EEU95648.1| toxin-antitoxin system, antitoxin component, Xre family [Faecalibacterium prausnitzii A2-165] Length = 65 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R M+Q L E G++ Q + EKG + + I ++L + F Sbjct: 6 KLKAARAEKDMTQGALAEAAGVSRQTINAIEKGEYNPTINLCRSICKILGKTLDELFWEE 65 >gi|218510037|ref|ZP_03507915.1| hypothetical protein RetlB5_22605 [Rhizobium etli Brasil 5] Length = 167 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 10/125 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 + ++ R G+S+ + LG++ +YE+ +++ +R+ H+ E+L PI Sbjct: 46 ISAFLKKTREAQGLSRADVAPMLGLSIPVYGRYERAFSKMTVTRMIHLCEILGFMPIDMI 105 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 F+ +P + S E + L L R ++ + R I L R I ++ Sbjct: 106 FEAAPHLWGRTSEEAEDC---------LTLARILRRLPNGTTRDLIRLLQRMIPDDDESD 156 Query: 134 RTIEE 138 R I + Sbjct: 157 RDISD 161 >gi|154251330|ref|YP_001412154.1| XRE family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155280|gb|ABS62497.1| transcriptional regulator, XRE family [Parvibaculum lavamentivorans DS-1] Length = 196 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 RIR R G +Q +L L T V + E + L+ I+ VL + D Sbjct: 4 RIRHFRKQRGFTQGELAAQLATTAATVSRLETADMTISMDWLERIASVLGVSVPDLLD 61 >gi|330971410|gb|EGH71476.1| transcriptional regulator, XRE family protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 114 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 41/93 (44%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+ I RR LG++Q++L E L + + + E G + +L +S L+S ++ Sbjct: 9 DKQIGQMIAKRRRALGLTQDQLAERLSMGREAYSRLELGKTSLSVPKLIQLSGALDSGLA 68 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 +D + ++ +S D + Sbjct: 69 ELVTDFSPRPTDQGHKIGLLLAPLSDADRQFIL 101 >gi|307689851|ref|ZP_07632297.1| transcriptional regulator, XRE family protein [Clostridium cellulovorans 743B] Length = 63 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R L ++Q++L + LG+T Q + E +S L F Sbjct: 3 NKVKEFRKQLKLTQDELAQELGVTRQTINAIENNKYNPTLELALKMSRFLGVSTESLF 60 >gi|291545337|emb|CBL18445.1| transcriptional regulator, XRE family [Ruminococcus sp. SR1/5] Length = 71 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R +SQ +L E L I+ + YE G + L ++ ++ I + Sbjct: 4 QRIQDLRTDADLSQRELSEILHISQRSYSHYETGSRNIPIEMLIRLANYYDTSIDYLVGR 63 Query: 77 SPTVC 81 + Sbjct: 64 TDRKK 68 >gi|225867621|ref|YP_002743569.1| DNA-binding protein [Streptococcus equi subsp. zooepidemicus] gi|225700897|emb|CAW97557.1| putative DNA-binding protein [Streptococcus equi subsp. zooepidemicus] Length = 120 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 31/76 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ +SQ+ L E L I+ Q + K+E G L ++ VLE + Sbjct: 6 EQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATPDLENLVTLAAVLEVTLDELVTG 65 Query: 77 SPTVCSDISSEENNVM 92 I E + Sbjct: 66 KEPAIKVIKKTEKPMN 81 >gi|167744435|ref|ZP_02417209.1| Helix-turn-helix domain protein, putative [Burkholderia pseudomallei 14] Length = 121 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 46/100 (46%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VG+ I +R G++QE + + + ++ + +YE+G RL ++ + + I Sbjct: 7 LNKIVGRCIAKKREQAGLTQETVADLIHMSTEGYARYERGETPASLMRLSRLATIFKCGI 66 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + T + + N++D +S D ++ + I Sbjct: 67 DELVVETSTGLTAQAQHIANLLDGVSCSDRDEILKIVESI 106 >gi|281355570|ref|ZP_06242064.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] gi|281318450|gb|EFB02470.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] Length = 185 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 32/72 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G++I R ++ ++ + GI+ V + E+G+ S L+ I L+ + Sbjct: 2 IENRIGRKIHQYRKDKNLTIKEFSDISGISTALVSQLERGIGNPSLSVLRLICRTLDISL 61 Query: 71 SFFFDVSPTVCS 82 S F S Sbjct: 62 SSLFFEEIDNAS 73 >gi|125623537|ref|YP_001032020.1| hypothetical protein llmg_0681 [Lactococcus lactis subsp. cremoris MG1363] gi|124492345|emb|CAL97283.1| putative membrane protein [Lactococcus lactis subsp. cremoris MG1363] gi|300070296|gb|ADJ59696.1| hypothetical protein LLNZ_03535 [Lactococcus lactis subsp. cremoris NZ9000] Length = 161 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 1/87 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R G +QE L E IT + +Q+ E G V L IS L P+S F+ Sbjct: 5 RVAELRKKRGWTQEVLAEKANITVRTIQRIENGT-DVSLDTLASISNALLVPVSELFESI 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLN 104 ++ + + I + Sbjct: 64 EEEAKEVEIMDMSKEQLIQLKYRKTIT 90 >gi|59713441|ref|YP_206216.1| MerR family transcriptional regulator [Vibrio fischeri ES114] gi|59481689|gb|AAW87328.1| transcriptional regulator, MerR family [Vibrio fischeri ES114] Length = 500 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 7/80 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGIT-------FQQVQKYEKGVNRVGASRLQHISEVL 66 +G +IR R ++ E L + E+G A L+ I+ V Sbjct: 13 FLGTKIRNLRKRNHLTMEDLSTRCIRVDPENSPSVSYLSMIERGKRVPSADMLEVIATVF 72 Query: 67 ESPISFFFDVSPTVCSDISS 86 + S+F D P + Sbjct: 73 QKESSWFLDNEPEPQAITPD 92 >gi|27379415|ref|NP_770944.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27352566|dbj|BAC49569.1| blr4304 [Bradyrhizobium japonicum USDA 110] Length = 226 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 34/74 (45%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + P + +G+ ++ R G++ +++ E G+ + K E G+ + +L Sbjct: 1 MSEITTPEGANSQLGQCLKAARQARGLTLKQVAERTGMALSTLSKVENGLMSLTYDKLLQ 60 Query: 62 ISEVLESPISFFFD 75 ++ L+ I+ F+ Sbjct: 61 LTSGLKMEIAELFN 74 >gi|298207442|ref|YP_003715621.1| DNA-binding protein, putative [Croceibacter atlanticus HTCC2559] gi|83850078|gb|EAP87946.1| DNA-binding protein, putative [Croceibacter atlanticus HTCC2559] Length = 75 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 24/60 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ I R MSQ + + + + E G L+ I+ LE +S FF Sbjct: 12 VGENIAKLRREKEMSQMDVCAIIDMDKPNLSAIENGRQNATILTLKKIANALEVDVSNFF 71 >gi|325282101|ref|YP_004254643.1| helix-turn-helix domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324313910|gb|ADY34463.1| helix-turn-helix domain protein [Odoribacter splanchnicus DSM 20712] Length = 110 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 31/60 (51%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ I+ R+ ++QE+LGE +G+ Q+ K E G + S ++ + + L + Sbjct: 40 FVGEAIKNARLKQHLTQEELGERIGVKRSQICKLENGNCSITLSTMRRVFKALGITTASL 99 >gi|322391527|ref|ZP_08064996.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] gi|321145610|gb|EFX41002.1| XRE family transcriptional regulator [Streptococcus peroris ATCC 700780] Length = 64 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 27/62 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R LG SQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKELGKSQLELAKDIGVSRQTINMIENDKYNPTLELCLNLARSLQTDLNNLFWE 61 Query: 77 SP 78 Sbjct: 62 DD 63 >gi|319937945|ref|ZP_08012345.1| hypothetical protein HMPREF9488_03181 [Coprobacillus sp. 29_1] gi|319806851|gb|EFW03490.1| hypothetical protein HMPREF9488_03181 [Coprobacillus sp. 29_1] Length = 107 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D ++ +R++ R ++Q+++ L I V +E G + S L +S++ Sbjct: 2 PIDTDISRRLKEYRNFKHLTQKEVANILHIPHSAVSDFENGKREITVSELSLLSQLYGRN 61 Query: 70 ISFFFDV 76 I + Sbjct: 62 IEEIING 68 >gi|312129639|ref|YP_003996979.1| transcriptional regulator, xre family [Leadbetterella byssophila DSM 17132] gi|311906185|gb|ADQ16626.1| transcriptional regulator, XRE family [Leadbetterella byssophila DSM 17132] Length = 472 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 20/139 (14%), Positives = 55/139 (39%), Gaps = 13/139 (9%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P+ + G +++ R+ G S ++L E + I+ + + EKG ++ + +L Sbjct: 4 DPIRLIFGLKLKQFRLEKGWSLQELSERVNISPSYLNEIEKGKKYPKTEKIVELGRILGK 63 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE------- 121 + V +D+ + + + + + F I+ + ++E Sbjct: 64 DYNDL------VSTDLKTVLGPMGEIMGNKFFTDIPFEFFGINPSDIIGMMVEAPVKFAA 117 Query: 122 LVRSIVSSEKKYRTIEEEC 140 L+ +++ + Y E+ Sbjct: 118 LINTLIKIGRSYNVSVEKL 136 >gi|307327218|ref|ZP_07606406.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306887109|gb|EFN18107.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 200 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 44/128 (34%), Gaps = 15/128 (11%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ + R R R G S + + +GI+ + K E + L ++ L P Sbjct: 11 ALERIIAVRAREYRQAAGASVGGMAQRVGISKAMLSKIENAQTACSLTTLSRLARGLGVP 70 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 ++ F + F+ G ++ R +I L+ ++ S Sbjct: 71 VTALFRGMDDEREAV---------FVPAGHGARIVRRGTRIGHE------YALLGALRGS 115 Query: 130 EKKYRTIE 137 K+ +E Sbjct: 116 NKRMEALE 123 >gi|307287457|ref|ZP_07567509.1| helix-turn-helix protein [Enterococcus faecalis TX0109] gi|306501503|gb|EFM70802.1| helix-turn-helix protein [Enterococcus faecalis TX0109] Length = 119 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 5/100 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R G +QE L + + +T + + E ++ I+ +L+ + FF Sbjct: 13 LGIAIKKAREAKGWTQEYLAQLVDLTPRSIMYIENRGQHPRLNKFYLITTLLDISVDQFF 72 Query: 75 -----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 D + N++ + L + + Sbjct: 73 FPCNEDGDNNRRKQVDVLLNDMEEKELIVMEAGLVALYDR 112 >gi|262046896|ref|ZP_06019856.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] gi|260572878|gb|EEX29438.1| transcriptional regulator [Lactobacillus crispatus MV-3A-US] Length = 123 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 34/72 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R G S+ K + LG++ Q+ +E ++ L I+ + E+ + Sbjct: 6 QRIKNLRDSKGWSKSKTAQMLGVSAQRYSNWEYDLHEPDYEMLNQIAALFETTTDYLTGK 65 Query: 77 SPTVCSDISSEE 88 S S+ ++++ Sbjct: 66 SDNPSSESTAKD 77 >gi|255292250|dbj|BAH89373.1| XRE family transcriptional regulator [uncultured bacterium] gi|255292348|dbj|BAH89468.1| XRE family transcriptional regulator [uncultured bacterium] gi|255292589|dbj|BAH89700.1| XRE family transcriptional regulator [uncultured bacterium] gi|255293091|dbj|BAH90185.1| XRE family transcriptional regulator [uncultured bacterium] Length = 168 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 36/73 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R R++LG+S ++GE +G+T + K E ++ + L + L +S Sbjct: 23 LRIGAKLRHARLMLGLSLCEVGERIGVTEGYLSKLENNRSQASMATLHRLVGALGMNMSE 82 Query: 73 FFDVSPTVCSDIS 85 F S I+ Sbjct: 83 LFATSSDDGLPIT 95 >gi|229051388|ref|ZP_04194893.1| Prophage LambdaBa02, repressor protein [Bacillus cereus AH676] gi|228721957|gb|EEL73397.1| Prophage LambdaBa02, repressor protein [Bacillus cereus AH676] Length = 112 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R G +Q +LG+ +G+ + E + +EVL + Sbjct: 3 GDRVKQLRKSKGWTQGELGDAVGLKKATISLIENNKRDRSERSVSVFAEVLGCTSDYLLG 62 Query: 76 VSPTVCSDISSEENNVMDF 94 S + +F Sbjct: 63 FSDDPQLNGEQHSRLKQEF 81 >gi|308235243|ref|ZP_07665980.1| transcriptional regulator [Gardnerella vaginalis ATCC 14018] gi|311115056|ref|YP_003986277.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019] gi|310946550|gb|ADP39254.1| transcriptional regulator [Gardnerella vaginalis ATCC 14019] Length = 157 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 1/91 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 IR R ++Q++L E LG++ + +YE G + + + I + + + Sbjct: 5 NIRALRRSKKITQQELAEALGVSRNSIVRYENGTSAISTRLIDKICDKFKVSLFDIVH-E 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + + N ++ + L L R + Sbjct: 64 KELSASDKYDLNMKIEVLKERGALLLARLYK 94 >gi|59801268|ref|YP_207980.1| hypothetical protein NGO0867 [Neisseria gonorrhoeae FA 1090] gi|194098501|ref|YP_002001563.1| hypothetical protein NGK_0938 [Neisseria gonorrhoeae NCCP11945] gi|254493679|ref|ZP_05106850.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268594735|ref|ZP_06128902.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268596937|ref|ZP_06131104.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268598888|ref|ZP_06133055.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268601243|ref|ZP_06135410.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268603564|ref|ZP_06137731.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268682044|ref|ZP_06148906.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268684254|ref|ZP_06151116.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268686512|ref|ZP_06153374.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291043928|ref|ZP_06569644.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|293399131|ref|ZP_06643296.1| hypothetical protein NGNG_00329 [Neisseria gonorrhoeae F62] gi|59718163|gb|AAW89568.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|193933791|gb|ACF29615.1| Conserved hypothetical protein [Neisseria gonorrhoeae NCCP11945] gi|226512719|gb|EEH62064.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291] gi|268548124|gb|EEZ43542.1| transcriptional regulator [Neisseria gonorrhoeae 35/02] gi|268550725|gb|EEZ45744.1| transcriptional regulator [Neisseria gonorrhoeae FA19] gi|268583019|gb|EEZ47695.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11] gi|268585374|gb|EEZ50050.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18] gi|268587695|gb|EEZ52371.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1] gi|268622328|gb|EEZ54728.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332] gi|268624538|gb|EEZ56938.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679] gi|268626796|gb|EEZ59196.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035] gi|291012391|gb|EFE04380.1| transcriptional regulator [Neisseria gonorrhoeae DGI2] gi|291610545|gb|EFF39655.1| hypothetical protein NGNG_00329 [Neisseria gonorrhoeae F62] Length = 129 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 56/131 (42%), Gaps = 9/131 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V +IR R + +QE++ E L ++ K E+G + + +L+ I+++ + Sbjct: 1 MEVHDKIRTLREVNQWTQEEMAEKLEMSVNGYSKIERGKSGINLDKLRQIAQIFNIDVVE 60 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + + I NN + I + + L + + + + +++ ++ + Sbjct: 61 LLAEQNRSFFFSIGDNTNNHHNIIGSDEML--------VFENEKLRSLLDAKDELIRQKD 112 Query: 132 KYRTIEEECMV 142 + ++ ++ Sbjct: 113 SEIAVLKKLVI 123 >gi|21231057|ref|NP_636974.1| hypothetical protein XCC1604 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768938|ref|YP_243700.1| hypothetical protein XC_2631 [Xanthomonas campestris pv. campestris str. 8004] gi|21112686|gb|AAM40898.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574270|gb|AAY49680.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] Length = 113 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 8/77 (10%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQ-----QVQKYEKGVNRVGA 56 + K P V G R+R RM +G +Q +L E +G+ +V +YE G + Sbjct: 1 MPKPKTPATVY---GTRLRHARMAMGWTQAELAERIGMVDSVSGATRVSRYETGQHDPDP 57 Query: 57 SRLQHISEVLESPISFF 73 + + +++ L+ P+++F Sbjct: 58 ATAEALAKALKLPVAYF 74 >gi|30263082|ref|NP_845459.1| transcriptional regulator AnsR [Bacillus anthracis str. Ames] gi|47528428|ref|YP_019777.1| transcriptional regulator AnsR [Bacillus anthracis str. 'Ames Ancestor'] gi|49185923|ref|YP_029175.1| transcriptional regulator AnsR [Bacillus anthracis str. Sterne] gi|49479196|ref|YP_037209.1| ans operon repressor protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|165869017|ref|ZP_02213677.1| transcriptional regulator AnsR [Bacillus anthracis str. A0488] gi|167632213|ref|ZP_02390540.1| transcriptional regulator AnsR [Bacillus anthracis str. A0442] gi|167637327|ref|ZP_02395607.1| transcriptional regulator AnsR [Bacillus anthracis str. A0193] gi|170684798|ref|ZP_02876023.1| transcriptional regulator AnsR [Bacillus anthracis str. A0465] gi|170705177|ref|ZP_02895642.1| transcriptional regulator AnsR [Bacillus anthracis str. A0389] gi|177650023|ref|ZP_02933024.1| transcriptional regulator AnsR [Bacillus anthracis str. A0174] gi|190564580|ref|ZP_03017501.1| transcriptional regulator AnsR [Bacillus anthracis Tsiankovskii-I] gi|196042989|ref|ZP_03110228.1| transcriptional regulator AnsR [Bacillus cereus 03BB108] gi|218904253|ref|YP_002452087.1| transcriptional regulator AnsR [Bacillus cereus AH820] gi|227814067|ref|YP_002814076.1| transcriptional regulator AnsR [Bacillus anthracis str. CDC 684] gi|228915705|ref|ZP_04079288.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229125016|ref|ZP_04254184.1| HTH-type transcriptional regulator ansR [Bacillus cereus 95/8201] gi|229603920|ref|YP_002867352.1| transcriptional regulator AnsR [Bacillus anthracis str. A0248] gi|254685674|ref|ZP_05149533.1| ans operon repressor protein [Bacillus anthracis str. CNEVA-9066] gi|254723085|ref|ZP_05184873.1| ans operon repressor protein [Bacillus anthracis str. A1055] gi|254738141|ref|ZP_05195844.1| ans operon repressor protein [Bacillus anthracis str. Western North America USA6153] gi|254742689|ref|ZP_05200374.1| ans operon repressor protein [Bacillus anthracis str. Kruger B] gi|254752455|ref|ZP_05204491.1| ans operon repressor protein [Bacillus anthracis str. Vollum] gi|254760973|ref|ZP_05212997.1| ans operon repressor protein [Bacillus anthracis str. Australia 94] gi|301054627|ref|YP_003792838.1| ans operon repressor protein [Bacillus anthracis CI] gi|30257715|gb|AAP26945.1| transcriptional regulator AnsR [Bacillus anthracis str. Ames] gi|47503576|gb|AAT32252.1| transcriptional regulator AnsR [Bacillus anthracis str. 'Ames Ancestor'] gi|49179850|gb|AAT55226.1| transcriptional regulator AnsR [Bacillus anthracis str. Sterne] gi|49330752|gb|AAT61398.1| ans operon repressor protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|164715743|gb|EDR21260.1| transcriptional regulator AnsR [Bacillus anthracis str. A0488] gi|167514834|gb|EDR90200.1| transcriptional regulator AnsR [Bacillus anthracis str. A0193] gi|167532511|gb|EDR95147.1| transcriptional regulator AnsR [Bacillus anthracis str. A0442] gi|170130032|gb|EDS98894.1| transcriptional regulator AnsR [Bacillus anthracis str. A0389] gi|170671058|gb|EDT21796.1| transcriptional regulator AnsR [Bacillus anthracis str. A0465] gi|172083975|gb|EDT69034.1| transcriptional regulator AnsR [Bacillus anthracis str. A0174] gi|190563897|gb|EDV17861.1| transcriptional regulator AnsR [Bacillus anthracis Tsiankovskii-I] gi|196026473|gb|EDX65141.1| transcriptional regulator AnsR [Bacillus cereus 03BB108] gi|218539822|gb|ACK92220.1| transcriptional regulator AnsR [Bacillus cereus AH820] gi|227003092|gb|ACP12835.1| transcriptional regulator AnsR [Bacillus anthracis str. CDC 684] gi|228658432|gb|EEL14104.1| HTH-type transcriptional regulator ansR [Bacillus cereus 95/8201] gi|228843935|gb|EEM89001.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268328|gb|ACQ49965.1| transcriptional regulator AnsR [Bacillus anthracis str. A0248] gi|300376796|gb|ADK05700.1| ans operon repressor protein [Bacillus cereus biovar anthracis str. CI] Length = 125 Score = 42.1 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 4/122 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R S ++ + LGI YE G L I+++ ++ + + Sbjct: 3 ERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYILGR 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + + + L + ++ I VRS K Sbjct: 63 IEHSHQNKDVID---ITRLLNDPDPTLLIDGEALSTEEIID-FIAFVRSKRELSSKRIEN 118 Query: 137 EE 138 E Sbjct: 119 IE 120 >gi|332654947|ref|ZP_08420689.1| conserved domain protein [Ruminococcaceae bacterium D16] gi|332516290|gb|EGJ45898.1| conserved domain protein [Ruminococcaceae bacterium D16] Length = 67 Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 22/64 (34%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R G+ Q +L E + + + E G I++V + F+ Sbjct: 4 KIKEYREKAGLKQVELAELVSSRRETIVHLENGRYNPSLKLAMDIAKVFHVTVEELFEFV 63 Query: 78 PTVC 81 Sbjct: 64 EDEK 67 >gi|314934399|ref|ZP_07841758.1| conserved domain protein [Staphylococcus caprae C87] gi|313652329|gb|EFS16092.1| conserved domain protein [Staphylococcus caprae C87] Length = 65 Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +SQ L +G++ Q + E +I++ L ++ F Sbjct: 2 NRVKQYRAHQKISQLALARAVGVSRQTINMIENDRYNPSLKLCINIAKELNVTLNDLFWE 61 Query: 77 SPTV 80 Sbjct: 62 DKNG 65 >gi|312889787|ref|ZP_07749333.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] gi|311297713|gb|EFQ74836.1| transcriptional regulator, XRE family [Mucilaginibacter paludis DSM 18603] Length = 194 Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ LG SQ L + + + +Q+ E G ++ + L D Sbjct: 7 QRLKELRLNLGYSQNDLADNAKLNLRTIQRIENGETVPRGDTMKRLYGALNITPEDLEDG 66 Query: 77 SPTVC 81 Sbjct: 67 LGEPD 71 >gi|301062276|ref|ZP_07202946.1| cupin domain protein [delta proteobacterium NaphS2] gi|300443624|gb|EFK07719.1| cupin domain protein [delta proteobacterium NaphS2] Length = 179 Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 6/89 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +P VG+R+R R G+ E L + +G + + +Q E G + L Sbjct: 1 MKTKDMMP------VGERVRKARENKGVDLEALADRVGCSAEYLQWVEDGQVEPPVALLL 54 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEEN 89 ++ + F + + Sbjct: 55 QLARTMSLDSGTFLAADDSPERRLEEAAK 83 >gi|302523715|ref|ZP_07276057.1| predicted protein [Streptomyces sp. AA4] gi|302432610|gb|EFL04426.1| predicted protein [Streptomyces sp. AA4] Length = 247 Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 13/107 (12%), Positives = 39/107 (36%), Gaps = 7/107 (6%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN +R+R + G++ E++ + L + + V+++ I+ + Sbjct: 1 MPN-------ERLRDALLRNGLTLEQVAKALSVDQKTVERWITKGRTPYPKHRHKIAAMA 53 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 ++ + S + V+ + + + + I+D Sbjct: 54 RESETYLWPDSVAPERRAETAAAEVVSVFPHRNAIPVELWDRLINDA 100 >gi|255655987|ref|ZP_05401396.1| putative phage regulatory protein [Clostridium difficile QCD-23m63] gi|296450586|ref|ZP_06892339.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296879295|ref|ZP_06903290.1| probable phage regulatory protein [Clostridium difficile NAP07] gi|296260430|gb|EFH07272.1| probable phage regulatory protein [Clostridium difficile NAP08] gi|296429838|gb|EFH15690.1| probable phage regulatory protein [Clostridium difficile NAP07] Length = 123 Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 20/127 (15%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R L ++Q++L +GIT + +YE + + + +++ LE+ + Sbjct: 4 LGDRIANLRKELDINQKELATKVGITEASLSRYENNLREPKSEIIVRLAKALETSTDYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 V+ + I+++ V +K +L+ I S EK+ R Sbjct: 64 GVNDNTNISKEDKLI--------------------IENLSVSEKTKKLLEKIYSLEKEDR 103 Query: 135 TIEEECM 141 E+ + Sbjct: 104 EAIEKMI 110 >gi|222084302|ref|YP_002542831.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221721750|gb|ACM24906.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 272 Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 31/84 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+++R R G + +++ +G+T + E+ V L +++ + +S Sbjct: 96 IGRKLRALRHAAGKTLDQVAADMGVTSSTLSTLERTSQGVSFKTLHDLADYYGTTVSRLS 155 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 + +TP Sbjct: 156 GEEREDVPVLIRSGEWRAWPETTP 179 >gi|218133915|ref|ZP_03462719.1| hypothetical protein BACPEC_01804 [Bacteroides pectinophilus ATCC 43243] gi|217991290|gb|EEC57296.1| hypothetical protein BACPEC_01804 [Bacteroides pectinophilus ATCC 43243] Length = 128 Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 48/112 (42%), Gaps = 7/112 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +KK +D ++G R++ R+ ++ ++L E G++ + +++ E N +L Sbjct: 13 MAKSKK----IDKDMGFRLKKARLDQKLTYDELSEKSGVSSRYIKEIENHGNVPSLEKLG 68 Query: 61 HISEVLESPIS-FFFDVSPTVCSDISSEENNVMDFISTPDG--LQLNRYFIQ 109 + L FF+ +PT D + + S L L +++ Sbjct: 69 QLIRALHISADPFFYPAAPTDNLDYQRLLVYLSECTSDQITTILALVEAYLR 120 >gi|182419511|ref|ZP_02950762.1| conserved domain protein [Clostridium butyricum 5521] gi|237666225|ref|ZP_04526212.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376641|gb|EDT74214.1| conserved domain protein [Clostridium butyricum 5521] gi|237658315|gb|EEP55868.1| conserved domain protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 73 Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 28/64 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I++ R L M+Q++L E +G++ Q + EKG + I +VL + F Sbjct: 7 IKVARAQLDMTQKELAERVGVSRQTMNAIEKGEYNPTIKLCRSICKVLGKKLDDLFWEDE 66 Query: 79 TVCS 82 Sbjct: 67 DNEK 70 >gi|182416559|ref|ZP_02947984.1| immunity repressor protein [Clostridium butyricum 5521] gi|237667186|ref|ZP_04527170.1| DNA-binding phage protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379631|gb|EDT77113.1| immunity repressor protein [Clostridium butyricum 5521] gi|237655534|gb|EEP53090.1| DNA-binding phage protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 118 Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 1/82 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R L +SQ+ L + + +T + +Y G L I+ L + Sbjct: 4 IGRKIEERLQELDLSQKDLADKVNVTEATISRYITGTRSPRGEILSRIAVALGLTTDYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFIS 96 + ++ +DI N D IS Sbjct: 64 -GNESMENDIKLIVNKKYDDIS 84 >gi|164516364|emb|CAP48298.1| putative integron gene cassette protein [uncultured bacterium] Length = 101 Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 42/96 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ I+ RR+ LG S + + LGIT Q V +E+ + L I+++L + Sbjct: 4 IGELIKARRLELGYSSATVAKHLGITAQAVSNWERQGKSPAKALLPKIADLLGIRVEELL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + S ++ N +S P+ L + + Sbjct: 64 GSTEVRLSIEETQLLNSFRSLSAPERSFLLKMLDGL 99 >gi|153814022|ref|ZP_01966690.1| hypothetical protein RUMTOR_00230 [Ruminococcus torques ATCC 27756] gi|317502392|ref|ZP_07960557.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|331087984|ref|ZP_08336907.1| hypothetical protein HMPREF1025_00490 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848418|gb|EDK25336.1| hypothetical protein RUMTOR_00230 [Ruminococcus torques ATCC 27756] gi|316896202|gb|EFV18308.1| XRE family Transcriptional regulator [Lachnospiraceae bacterium 8_1_57FAA] gi|330409295|gb|EGG88744.1| hypothetical protein HMPREF1025_00490 [Lachnospiraceae bacterium 3_1_46FAA] Length = 68 Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R ++Q+KLGE + ++ Q + E G I+++ I F Sbjct: 3 NRVKELREKENLTQKKLGEKVHVSRQAINAIETGKYDPSLWLAYDIAQLFHMTIEEVF 60 >gi|121609687|ref|YP_997494.1| XRE family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121554327|gb|ABM58476.1| transcriptional regulator [Verminephrobacter eiseniae EF01-2] Length = 178 Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 1/107 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GKR+ R+ GMS L + G++ + + E+GV S L+ +S V ++ Sbjct: 1 MLGKRLHELRLTRGMSLRALAQAAGVSPTLLSQIERGVTEPSLSTLRALSAVFGESMAAL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 F P S S + R ++V + + Sbjct: 61 F-RDPAAPSVWLSRPGERTQITGPKGTVSYERLTHGNAPMEVLRAVF 106 >gi|50954710|ref|YP_061998.1| transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951192|gb|AAT88893.1| transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] Length = 184 Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R+ G S L G++ + + E+G++ L+ ++ V + +S F Sbjct: 8 IGERLHQLRVERGRSVRALARETGVSATLLSQIERGLSDPSLRTLRALAGVFGTSVSTLF 67 Query: 75 DV 76 D Sbjct: 68 DD 69 >gi|24376233|ref|NP_720341.1| type II restriction-modification system activator, putative [Shewanella oneidensis MR-1] gi|24344698|gb|AAN52941.1| type II restriction-modification system activator [Shewanella oneidensis MR-1] Length = 75 Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R R+ G+SQE+L E G + E+G S L+ +++ L I+ Sbjct: 12 LANNVRTFRLKNGISQEQLAEICGFHRTYIGSIERGERNTTLSTLEVLAKTLNVSIAQLL 71 Query: 75 DVSP 78 + Sbjct: 72 NDDE 75 >gi|117924665|ref|YP_865282.1| helix-turn-helix domain-containing protein [Magnetococcus sp. MC-1] gi|117608421|gb|ABK43876.1| helix-turn-helix domain protein [Magnetococcus sp. MC-1] Length = 352 Score = 42.1 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 6/102 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R++L R G+S L + ++ Q + KYE+G ++ +S+ L +S+ Sbjct: 4 ERLKLARKREGLSLRDLASRIDGTVSAQAIGKYERGEMMPSSTVSIALSKALGVSVSYLL 63 Query: 75 DVSPTVCSDIS----SEENNVMDFISTPDGLQLNRYFIQIDD 112 S + + + L ++QI++ Sbjct: 64 SPSDISLEKVEFRKLASTKARERAMVEGAVLDHVDRYLQIEE 105 >gi|326803361|ref|YP_004321179.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326650633|gb|AEA00816.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 72 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RI+ R I G +++KL + L + + + K+E+G N + + ++ + + Sbjct: 6 GERIKELREIHGWTKQKLSDLLEMKSYTSITKWEQGNNLPRGGEIIKLCKLFDVSSDYLL 65 Query: 75 DVSPTVC 81 + T Sbjct: 66 GLKDTKK 72 >gi|322372600|ref|ZP_08047136.1| putative transcriptional regulator [Streptococcus sp. C150] gi|321277642|gb|EFX54711.1| putative transcriptional regulator [Streptococcus sp. C150] Length = 159 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 36/96 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ I+ R ++Q +L LGI+ + +YE G + + L I + L Sbjct: 1 MMIGENIKAVRKYKQLTQPELANLLGISRNSLSRYENGTSAISTELLDRICQTLNVSYVD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + ++ + L++ + Sbjct: 61 LVGEEKMLTPVEDYQLTTKIEVLKERGAGILSQLYR 96 >gi|320534197|ref|ZP_08034723.1| helix-turn-helix protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133592|gb|EFW26014.1| helix-turn-helix protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 74 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 27/67 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D V RI + R +S+ +L E LG+ +Q V E+G I+ + + Sbjct: 3 DDVVHNRIAVLRADRRVSRRELAEALGVHYQTVGYLERGEYAPSLHLALRIARYFDVAVE 62 Query: 72 FFFDVSP 78 F + Sbjct: 63 SVFSLEE 69 >gi|312976783|ref|ZP_07788532.1| putative zinc-binding transcriptional regulator, Cro/CI family [Lactobacillus crispatus CTV-05] gi|310896111|gb|EFQ45176.1| putative zinc-binding transcriptional regulator, Cro/CI family [Lactobacillus crispatus CTV-05] Length = 385 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR++ R+ ++ L + +G++ Q + KYE + ++ Q I +VL P+ FF D Sbjct: 12 GKRLKEARLFNHLTMSALADQIGVSKQAISKYEHNKIEISSAVFQKIVQVLNFPLYFFTD 71 Query: 76 VSPTVCSDISS 86 D + Sbjct: 72 FEKVPYQDDGT 82 >gi|310764970|gb|ADP09920.1| RstR1 [Erwinia sp. Ejp617] gi|310764977|gb|ADP09927.1| RstR1 [Erwinia sp. Ejp617] Length = 122 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-FD 75 R R G++Q ++ + +GI QV++YE G + L+ I+ + F+ Sbjct: 17 ARFLQLRKQHGLTQPQMADKVGIHLTQVRRYESGETQPSLDILKRIAVTFSVSADWLIFE 76 Query: 76 VSPTVCSDISSEENN 90 D + Sbjct: 77 EGEREPQDEMKLKFE 91 >gi|307320170|ref|ZP_07599590.1| putative phage repressor [Sinorhizobium meliloti AK83] gi|306894216|gb|EFN24982.1| putative phage repressor [Sinorhizobium meliloti AK83] Length = 231 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 2/96 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G IR R G+ Q + E LGI V +E G N L + L Sbjct: 8 IQIGTAIRTARKRRGLVQRNIAEHLGIDVAAVGMWEGGRNLPSTENLMRAALFLGINPVA 67 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLNRY 106 +D ++ + D P G + Sbjct: 68 LARGELVYINGTDDLADAEIISDPSPPPTGPMDVKL 103 >gi|300765038|ref|ZP_07075026.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] gi|300514338|gb|EFK41397.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] Length = 105 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 38/104 (36%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V++ V + I R +SQ +L +GI + + E G + A L+ I+ + Sbjct: 2 VNMKVNEMIINLREKRNISQRELANRIGINKSVMNRIESGERDIRAHELEAIANYFDVSA 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + SD+ + + ++ FI+ + Sbjct: 62 DYLLGREEFDNSDLLAAHIDDDLTEDERIEIEKYLKFIRSQKEE 105 >gi|238917692|ref|YP_002931209.1| hypothetical protein EUBELI_01772 [Eubacterium eligens ATCC 27750] gi|238873052|gb|ACR72762.1| Hypothetical protein EUBELI_01772 [Eubacterium eligens ATCC 27750] Length = 98 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 4/76 (5%) Query: 9 NPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR--VGASRLQHISE 64 N D+ +G I+ R ++Q +L E I+ + K E + S L I+ Sbjct: 23 NDTDLYRVIGANIKNYREQAKLTQVQLAEQAKISISYLSKIEAAGCDKSLSISVLNQIAN 82 Query: 65 VLESPISFFFDVSPTV 80 VL IS FF Sbjct: 83 VLGVEISEFFKEVDKT 98 >gi|239815201|ref|YP_002944111.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801778|gb|ACS18845.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 195 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 2/91 (2%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+ +D + R+ R +S +L E G++ + K E+ + A L ++ L Sbjct: 11 PSGIDSLIAARLLALRQAKALSLAELAELSGVSKAMISKVERAESSPTAVLLGRLAAGLG 70 Query: 68 SPISFFFDVSPTVCSDI--SSEENNVMDFIS 96 P++ + +E+ D + Sbjct: 71 VPLAQLLTEEKASPRRLRPRAEQEVWRDPEA 101 >gi|194291408|ref|YP_002007315.1| transcriptional regulator Xre family [Cupriavidus taiwanensis LMG 19424] gi|193225312|emb|CAQ71256.1| putative transcriptional regulator, XRE family [Cupriavidus taiwanensis LMG 19424] Length = 198 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 26/63 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG ++ R +S ++L G++ + + E+ + + L ++ L ++ F Sbjct: 16 AVGMALQALRQQQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDF 75 Query: 74 FDV 76 Sbjct: 76 LAG 78 >gi|189405314|ref|ZP_02814730.2| regulatory protein [Escherichia coli O157:H7 str. EC869] gi|261223695|ref|ZP_05937976.1| putative transcriptional regulator from phage origin [Escherichia coli O157:H7 str. FRIK2000] gi|261255895|ref|ZP_05948428.1| putative transcriptional regulator from phage origin [Escherichia coli O157:H7 str. FRIK966] gi|300817229|ref|ZP_07097447.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|331680492|ref|ZP_08381151.1| regulatory protein [Escherichia coli H591] gi|331681931|ref|ZP_08382564.1| regulatory protein [Escherichia coli H299] gi|189370740|gb|EDU89156.1| regulatory protein [Escherichia coli O157:H7 str. EC869] gi|300530205|gb|EFK51267.1| peptidase S24-like domain protein [Escherichia coli MS 107-1] gi|309700480|emb|CBI99774.1| putative cI regulatory protein [Escherichia coli ETEC H10407] gi|331071955|gb|EGI43291.1| regulatory protein [Escherichia coli H591] gi|331081133|gb|EGI52298.1| regulatory protein [Escherichia coli H299] Length = 230 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 1/101 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPIS 71 +N+G R+R R M L E +G+ + + E G + + +I++ L I+ Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 F + + + N + + +++ + Sbjct: 61 DLFTSAHKSNTVYKNSNNEDVAQVKDVFRIEMLDISASAGN 101 >gi|166032258|ref|ZP_02235087.1| hypothetical protein DORFOR_01961 [Dorea formicigenerans ATCC 27755] gi|166027981|gb|EDR46738.1| hypothetical protein DORFOR_01961 [Dorea formicigenerans ATCC 27755] Length = 213 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 48/142 (33%), Gaps = 13/142 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R+ M+Q++L + G+ ++ YE G + L +I+ L Sbjct: 9 VGYLIRNFRIASDMTQKELADKCGLNESTIRNYELGNRYPDEATLLNIANNLGVSFYALS 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL---QLNRYF-IQIDDVKVR--------QKIIEL 122 D ++ + ++ F ++ R +K++E Sbjct: 69 DPDVANIFSALHVLFDIEWAYGLRPTMKDGEICFKFEERLPSAGPRPQEDLNNFRKMVEY 128 Query: 123 VRSIV-SSEKKYRTIEEECMVE 143 + E + + E + E Sbjct: 129 WARLRDKLEDEEISETEYYLKE 150 >gi|118587639|ref|ZP_01545049.1| putative DNA-binding protein [Stappia aggregata IAM 12614] gi|118439261|gb|EAV45892.1| putative DNA-binding protein [Stappia aggregata IAM 12614] Length = 185 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 15/102 (14%), Positives = 36/102 (35%), Gaps = 2/102 (1%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +D ++ +R+ R E+L + GI+ + + E+G A+ L ++ Sbjct: 2 SNLDQDLARRLTDLRRARNWPLEELAKRTGISRATLSRVERGDTSPTANVLGKLASAFGL 61 Query: 69 PISFFFDVSPTVCSDISSEENN--VMDFISTPDGLQLNRYFI 108 ++ F + + + E D + L Sbjct: 62 SMAELFGSASSTVERLVPREAQAVWTDPETGYTRRTLTPAAS 103 >gi|89255372|ref|NP_659801.2| hypothetical protein RHE_PD00237 [Rhizobium etli CFN 42] gi|190894245|ref|YP_001984539.1| hypothetical protein RHECIAT_PB0000282 [Rhizobium etli CIAT 652] gi|218682580|ref|ZP_03530181.1| hypothetical protein RetlC8_27503 [Rhizobium etli CIAT 894] gi|89213326|gb|AAM54815.2| hypothetical protein RHE_PD00237 [Rhizobium etli CFN 42] gi|190699906|gb|ACE93989.1| hypothetical conserved protein [Rhizobium etli CIAT 652] Length = 167 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 10/125 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE-SPISFF 73 + ++ R G+S+ + LG++ +YE+ +++ +R+ H+ E+L PI Sbjct: 46 ISAFLKKTREAQGLSRADVAPMLGLSIPVYGRYERAFSKMTVTRMIHLCEILGFMPIDMI 105 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 F+ +P + S E + L L R ++ + R I L R I ++ Sbjct: 106 FEAAPHLWGRTSEEAEDC---------LTLARILRRLPNGTTRDLIRLLQRMIPDDDESD 156 Query: 134 RTIEE 138 R I + Sbjct: 157 RGISD 161 >gi|319649464|ref|ZP_08003620.1| hypothetical protein HMPREF1013_00224 [Bacillus sp. 2_A_57_CT2] gi|317398626|gb|EFV79308.1| hypothetical protein HMPREF1013_00224 [Bacillus sp. 2_A_57_CT2] Length = 72 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 24/57 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ +R ++QE++ + I+ E G + I++ L + FF+ Sbjct: 5 LKTQRNKRNLTQEEVAKLSDISRSFYTHIEAGTKTPSVEVAKKIAKTLGFEWTLFFE 61 >gi|312865005|ref|ZP_07725233.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311099116|gb|EFQ57332.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 69 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 25/66 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R + +SQ L +G+ Q + E G +++ L++ ++ F Sbjct: 2 NRVKEFRQLKKLSQLALAREIGVARQTINLIENGKYNPSLELCIKLAKSLDTDLNSLFWE 61 Query: 77 SPTVCS 82 Sbjct: 62 VSDRSP 67 >gi|296102221|ref|YP_003612367.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056680|gb|ADF61418.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 191 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 36/94 (38%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ + RIRL R G S +L + G++ + K E+G + A+ L +S Sbjct: 6 DTMNQRISARIRLERESRGWSLSELADRAGVSRAMIHKIERGDSSPTATLLARLSGAFGI 65 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 +S + + N + L+ Sbjct: 66 SMSTLIARAEMQEGKLLRLANQPVWRDPQTHYLR 99 >gi|125718672|ref|YP_001035805.1| YorfE protein [Streptococcus sanguinis SK36] gi|323350334|ref|ZP_08085999.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|125498589|gb|ABN45255.1| YorfE protein, putative [Streptococcus sanguinis SK36] gi|322123519|gb|EFX95190.1| transcriptional regulator [Streptococcus sanguinis VMC66] gi|328945063|gb|EGG39219.1| transcriptional regulator [Streptococcus sanguinis SK1087] Length = 71 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 28/70 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFWE 61 Query: 77 SPTVCSDISS 86 D + Sbjct: 62 PQLTDEDSND 71 >gi|52841492|ref|YP_095291.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628603|gb|AAU27344.1| phage repressor [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 246 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 40/112 (35%), Gaps = 2/112 (1%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +G RI+ RM ++ + L E + ++ YE+G G ++ ++ LE Sbjct: 22 SIKEKIGLRIKQERMSKKLTMKALAELTDNLNISRINNYERGERTPGPEEIKQLARALEV 81 Query: 69 PISFFFDVSPTVCSDISSEENNVMDF-ISTPDGLQLNRYFIQIDDVKVRQKI 119 SF +S + + + +I + +K+ Sbjct: 82 SPSFLMCLSDDRQGSFKTPGLGGLLPILDYKSACYPALVIQRIKEESYSEKL 133 >gi|15894244|ref|NP_347593.1| Xre family DNA-binding domain-/TPR repeat-containing protein [Clostridium acetobutylicum ATCC 824] gi|15023861|gb|AAK78933.1|AE007611_1 Xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium acetobutylicum ATCC 824] gi|325508372|gb|ADZ20008.1| Xre family DNA-binding domain and TPR-repeat-containing protein [Clostridium acetobutylicum EA 2018] Length = 434 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 1/93 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L M+ + L IT Q+ E G + L++++ L + + + Sbjct: 6 LGEKIKARRKELNMTLKDL-AGDRITPGQISLVESGKSNPSMDLLEYLAGALNTSVEYLM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 + T I N + D L + Sbjct: 65 ESEETQAEKICVYYENTAEAYMLNDELMEAEQY 97 >gi|34762255|ref|ZP_00143261.1| Transcriptional regulator [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27888113|gb|EAA25173.1| Transcriptional regulator [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 146 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 4/101 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI R ++QE++ + + + +EKG LQ + + + + Sbjct: 7 IKDRIFTLRTENSLTQEQMAKIFKVGISTISMWEKGERIPRPKLLQELCDYFNVDMDYLM 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 S + + + + + N F Q+ + ++ Sbjct: 67 GRSDIKNRYQAGLKYDWE----SKKEEKENDIFSQLTEDEL 103 >gi|312195367|ref|YP_004015428.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311226703|gb|ADP79558.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 377 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 43/122 (35%), Gaps = 5/122 (4%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF---FFD 75 + RR +G+SQE L E L V ++E+G + ++E+L+ + + Sbjct: 7 LAARRKAVGLSQEGLAEALETARSTVARWERGEVAPQPATRAPLAEILQISLDDLDHLLN 66 Query: 76 VSPTVC--SDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 + + + T + + ++ +I +L + ++ Sbjct: 67 GDEPEKVHDPVQVGPTEPVGPLHTERARDRVKQLLAMERTFGGTRIADLAVDSARAFERR 126 Query: 134 RT 135 T Sbjct: 127 IT 128 >gi|257085321|ref|ZP_05579682.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|293382363|ref|ZP_06628302.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis R712] gi|293389375|ref|ZP_06633833.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis S613] gi|312907395|ref|ZP_07766386.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis DAPTO 512] gi|312910013|ref|ZP_07768860.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis DAPTO 516] gi|256993351|gb|EEU80653.1| cro/CI family transcriptional regulator [Enterococcus faecalis Fly1] gi|291080308|gb|EFE17672.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis R712] gi|291081262|gb|EFE18225.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis S613] gi|310626423|gb|EFQ09706.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis DAPTO 512] gi|311289286|gb|EFQ67842.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis DAPTO 516] gi|315575524|gb|EFU87715.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0309B] gi|315577563|gb|EFU89754.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0630] gi|315580035|gb|EFU92226.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX0309A] Length = 102 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 36/84 (42%), Gaps = 1/84 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFF 74 G++++ R G+ +L G+ + + EKG ++ +++ L +S+F Sbjct: 4 GEKLKYLRESKGLGVNQLALKSGVNASNISRLEKGIRKDPTFDTVKKLAKALGVSVSYFD 63 Query: 75 DVSPTVCSDISSEENNVMDFISTP 98 D + + + +++V + Sbjct: 64 DEEKEINTVAAHIDDDVTEDEMNE 87 >gi|302554055|ref|ZP_07306397.1| helix-turn-helix domain-containing protein [Streptomyces viridochromogenes DSM 40736] gi|302471673|gb|EFL34766.1| helix-turn-helix domain-containing protein [Streptomyces viridochromogenes DSM 40736] Length = 82 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 27/65 (41%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V R+ + R +S++ L E +G +Q + E+G IS+ P+ Sbjct: 4 QVHNRLAMVRAERKVSRQSLAEAVGAHYQTIGYIERGQYNPSLDLALKISKFFGLPVEAL 63 Query: 74 FDVSP 78 F + P Sbjct: 64 FSLEP 68 >gi|229074136|ref|ZP_04207183.1| Transcriptional regulator Xre [Bacillus cereus Rock4-18] gi|228709030|gb|EEL61156.1| Transcriptional regulator Xre [Bacillus cereus Rock4-18] Length = 67 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RIR R + G +QE + LG++ + + E+G + +++ L+ I Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKVSIEELM 65 >gi|226952353|ref|ZP_03822817.1| possible transcriptional regulator [Acinetobacter sp. ATCC 27244] gi|226836905|gb|EEH69288.1| possible transcriptional regulator [Acinetobacter sp. ATCC 27244] Length = 72 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 31/62 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G+ IR +R+ L ++QE L GI V + E+G + +L I+E+L+ Sbjct: 6 IAIGQLIRNKRLELKITQESLALQCGIDRSYVGRIERGEVNITVEKLYEIAEILKINPQE 65 Query: 73 FF 74 Sbjct: 66 LL 67 >gi|268592700|ref|ZP_06126921.1| DNA-binding protein [Providencia rettgeri DSM 1131] gi|291311842|gb|EFE52295.1| DNA-binding protein [Providencia rettgeri DSM 1131] Length = 112 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 34/63 (53%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N I G IR R G+S +L + + ++ QQ+ +YE+G+N++ L ++S L+ Sbjct: 16 NLFSIYCGLVIRKIRKENGISACELAKQVNVSQQQMSRYERGINKISIDMLFNLSVALDC 75 Query: 69 PIS 71 P Sbjct: 76 PFE 78 >gi|222152322|ref|YP_002561497.1| DNA-binding protein [Streptococcus uberis 0140J] gi|222113133|emb|CAR40543.1| putative DNA-binding protein [Streptococcus uberis 0140J] Length = 67 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 RI+ R +SQ +L E + +T Q + EKG ++ I F Sbjct: 3 NRIQELRKEHKISQAELAEAMEVTRQTIISLEKGRYNASLELAFKLATYFNLSIEDIF 60 >gi|221310565|ref|ZP_03592412.1| hypothetical protein Bsubs1_14411 [Bacillus subtilis subsp. subtilis str. 168] gi|221314889|ref|ZP_03596694.1| hypothetical protein BsubsN3_14332 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319811|ref|ZP_03601105.1| hypothetical protein BsubsJ_14248 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324090|ref|ZP_03605384.1| hypothetical protein BsubsS_14382 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312134|ref|YP_004204421.1| putative transcriptional regulator [Bacillus subtilis BSn5] gi|320018408|gb|ADV93394.1| putative transcriptional regulator; skin element [Bacillus subtilis BSn5] Length = 75 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R+ G +QE++ + I E G + + I E L + FF+ Sbjct: 5 LKKNRLEKGFTQEEVAKAAQIGRAYYTMIENGTRKPSVIVSKKIGEKLGFDWTIFFED 62 >gi|254419340|ref|ZP_05033064.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] gi|196185517|gb|EDX80493.1| Helix-turn-helix domain protein [Brevundimonas sp. BAL3] Length = 256 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 29/74 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ ++ R G+SQE+ E I ++YEKGV V +L ++ + Sbjct: 16 LGEALKRLRQRAGLSQEQAAERAEIVEITWRRYEKGVRGVTLDKLIGLAMAIGFDRDALL 75 Query: 75 DVSPTVCSDISSEE 88 V + Sbjct: 76 MEQAAVAGGSVAPP 89 >gi|148998521|ref|ZP_01825962.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP11-BS70] gi|168576609|ref|ZP_02722475.1| transcriptional activator [Streptococcus pneumoniae MLV-016] gi|307068599|ref|YP_003877565.1| transposase-like protein, IS1515 [Streptococcus pneumoniae AP200] gi|147755714|gb|EDK62760.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP11-BS70] gi|183577671|gb|EDT98199.1| transcriptional activator [Streptococcus pneumoniae MLV-016] gi|306410136|gb|ADM85563.1| Transposase-like protein, IS1515 [Streptococcus pneumoniae AP200] Length = 415 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ + +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + S + ++ + ++ +++++ + + EK Sbjct: 61 SLMPDFSALPSAYLELKYQILREPIYGKEEEYDKKEACLEEIEDL-----FYEQLPNEEK 115 >gi|116249869|ref|YP_765707.1| MerR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254517|emb|CAK05591.1| putative MerR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 269 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 1/102 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+++R R G + +++ +G+T + E+ V L ++E + +S Sbjct: 90 DTGLGRKLRSLRHANGKTLDQVAGDIGVTSSTLSTLERTSQGVSFKTLHDLAEYYGTTVS 149 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDD 112 + +TP +QL ++ D Sbjct: 150 RLSGEESGDVPVLVRAGEWRKWPETTPGVTVQLLAEGRRMMD 191 >gi|16264601|ref|NP_437393.1| MerR/LacI family transcriptional regulators [Sinorhizobium meliloti 1021] gi|307303541|ref|ZP_07583295.1| transcriptional regulator, MerR family [Sinorhizobium meliloti BL225C] gi|307318608|ref|ZP_07598041.1| transcriptional regulator, MerR family [Sinorhizobium meliloti AK83] gi|15140739|emb|CAC49253.1| putative protein, similar to transcriptional regulators merR and LacI family [Sinorhizobium meliloti 1021] gi|306895635|gb|EFN26388.1| transcriptional regulator, MerR family [Sinorhizobium meliloti AK83] gi|306902932|gb|EFN33524.1| transcriptional regulator, MerR family [Sinorhizobium meliloti BL225C] Length = 276 Score = 41.7 bits (96), Expect = 0.029, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ VG+++R R G + E++ +GI + E+ V + L +++E + +S Sbjct: 97 DMQVGRKLRSLRHAAGKTLEQVAGDIGIAASVLSTLERTSQGVSVAVLHNLAEYFGTTVS 156 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTP 98 T + +TP Sbjct: 157 SLSGEEQTRARALVRAGEWRNWPRTTP 183 >gi|326387341|ref|ZP_08208951.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] gi|326208522|gb|EGD59329.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] Length = 76 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 24/69 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ R G++QE++ E G + Q + E+G L +S L Sbjct: 7 VGRNFARLRRDRGLTQEQVAERSGFSQQYLSNLERGWRNPTVITLYELSLALGVSHVDLV 66 Query: 75 DVSPTVCSD 83 + Sbjct: 67 RPDLEDPIE 75 >gi|300172401|ref|YP_003771566.1| ABC transporter ATP-binding protein [Leuconostoc gasicomitatum LMG 18811] gi|299886779|emb|CBL90747.1| ABC transporter, ATP-binding protein [Leuconostoc gasicomitatum LMG 18811] Length = 296 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 35/78 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ L R + +SQ+ L + L ++ Q V K+E G +L ++E+L ++F Sbjct: 7 SQLCLLRQKMSLSQDALAQKLYVSRQSVSKWEHGDAEPDIDKLISLAEILAVDLNFLLSG 66 Query: 77 SPTVCSDISSEENNVMDF 94 + I +N F Sbjct: 67 QQSNEELIIRLQNISKKF 84 >gi|228988848|ref|ZP_04148902.1| hypothetical protein bthur0001_54830 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770876|gb|EEM19387.1| hypothetical protein bthur0001_54830 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 128 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 4/122 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R S ++ + LGI YE G L I+++ ++ + + Sbjct: 6 ERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYILGR 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + + + L + ++ I VRS K Sbjct: 66 IEHSHQNKDVID---ITRLLNDPDPTLLLDGEALSTEEIID-FIAFVRSKRELSSKRIEN 121 Query: 137 EE 138 E Sbjct: 122 IE 123 >gi|229101946|ref|ZP_04232660.1| Helix-turn-helix repressor protein [Bacillus cereus Rock3-28] gi|228681529|gb|EEL35692.1| Helix-turn-helix repressor protein [Bacillus cereus Rock3-28] Length = 69 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R G+SQEKL E LG++ Q + EKG I++ ++ I + F Sbjct: 7 EYRKKFGLSQEKLAEKLGVSRQTIISIEKGKYDPSLPLAFEIAKTFQTTIEYVF 60 >gi|255505869|ref|ZP_05348580.3| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] gi|255265478|gb|EET58683.1| toxin-antitoxin system, antitoxin component, Xre family [Bryantella formatexigens DSM 14469] Length = 137 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 42/101 (41%), Gaps = 1/101 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI RR LG+ Q ++ E ++++ + E+ ++ + ++ L++ F Sbjct: 36 EIGRRIARRRKQLGLKQAEVEEKADLSYKYLSNIERSISIPSIEVIMRLAVALDTTPDEF 95 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + ++ ++ P L L + F+ + Sbjct: 96 LVGTLQTENEEWKNVAEILR-NFDPKKLSLAKNFLIWLSEQ 135 >gi|222080797|ref|YP_002542525.1| transcriptional regulator [Agrobacterium radiobacter K84] gi|221725476|gb|ACM28565.1| transcriptional regulator [Agrobacterium radiobacter K84] Length = 189 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 3/84 (3%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V +V +R R G+SQ L E GI+ + + E G + S L ++ L Sbjct: 12 DVLAHVSGNLRRLRKSAGLSQTALAEASGISRRMIIAVEAGDANISLSSLDKLAAALGVD 71 Query: 70 ISFFFDVSPTVCSDISSEENNVMD 93 F D+ ++ N V Sbjct: 72 ---FVDLVRDPTRASRADINQVTW 92 >gi|213966374|ref|ZP_03394554.1| transcriptional regulator, HTH_3 family [Corynebacterium amycolatum SK46] gi|213950971|gb|EEB62373.1| transcriptional regulator, HTH_3 family [Corynebacterium amycolatum SK46] Length = 87 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K +P+ RI + R G+S+ +L + + + Q + E+G + Sbjct: 1 MSPKIKPKDPIF----NRISVLRAEHGLSRAELAKQVEVNPQTIGALERGDHYPSLDLAF 56 Query: 61 HISEVLESPISFFFDVSP 78 I V + P+ F Sbjct: 57 RICAVFDLPVEAVFSREE 74 >gi|213971555|ref|ZP_03399665.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] gi|213923658|gb|EEB57243.1| DNA-binding protein [Pseudomonas syringae pv. tomato T1] Length = 377 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 33/82 (40%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R G+S ++ L + ++V+++E G R + Q + V P F F + P V Sbjct: 16 RERAGLSAAQVARKLPVKPERVEEWESGEARPTFLQAQKWASVAHVPFGFLFLLQPPVEQ 75 Query: 83 DISSEENNVMDFISTPDGLQLN 104 + V + L+L Sbjct: 76 LPLPDLRTVGNSAPLRPSLELL 97 >gi|187934809|ref|YP_001885121.1| transcriptional regulator [Clostridium botulinum B str. Eklund 17B] gi|187722962|gb|ACD24183.1| transcriptional regulator [Clostridium botulinum B str. Eklund 17B] Length = 148 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 28/69 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R L ++QE+L LGI+ + E+ G L +++ + + Sbjct: 1 MLADKVKYLRNNLNLTQEELANKLGISQSSIGMIERNKRPAGRKMLIKLADFFNVTVDYL 60 Query: 74 FDVSPTVCS 82 S S Sbjct: 61 LSDSDENNS 69 >gi|167758243|ref|ZP_02430370.1| hypothetical protein CLOSCI_00581 [Clostridium scindens ATCC 35704] gi|167664140|gb|EDS08270.1| hypothetical protein CLOSCI_00581 [Clostridium scindens ATCC 35704] Length = 134 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 4/108 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ + R LG+SQ ++ E LG+ YE G ++ S + +S+ Sbjct: 17 GRNLAAMRNKLGLSQYEISEKLGMLQSTYAGYETGTRKIPLSVIVQLSKFFGVEADVLIG 76 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 +S + +++ S + + R + K+ ++ EL+ Sbjct: 77 LSD----YVPPKQSTFDLKESEKNLIITYRKLNREGKQKLCERADELL 120 >gi|28867507|ref|NP_790126.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28850741|gb|AAO53821.1| DNA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 377 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 33/82 (40%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R G+S ++ L + ++V+++E G R + Q + V P F F + P V Sbjct: 16 RERAGLSAAQVARKLPVKPERVEEWESGEARPTFLQAQKWASVAHVPFGFLFLLQPPVEQ 75 Query: 83 DISSEENNVMDFISTPDGLQLN 104 + V + L+L Sbjct: 76 LPLPDLRTVGNSAPLRPSLELL 97 >gi|22538118|ref|NP_688969.1| Cro/CI family transcriptional regulator [Streptococcus agalactiae 2603V/R] gi|22535025|gb|AAN00842.1|AE014281_11 transcriptional regulator, Cro/CI family [Streptococcus agalactiae 2603V/R] Length = 359 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 30/78 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I R LGM+QEKL + L +T + K+E + L ++++ + + Sbjct: 1 MIGDTILFERTRLGMTQEKLSDYLHLTKATISKWENNQAKPDIDYLILMAKLFDMTLDEL 60 Query: 74 FDVSPTVCSDISSEENNV 91 T+ Sbjct: 61 VGFQKTLTDSERGHLFEQ 78 >gi|167036674|ref|YP_001664252.1| TPR repeat-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115101|ref|YP_004185260.1| helix-turn-helix domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855508|gb|ABY93916.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928192|gb|ADV78877.1| helix-turn-helix domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 435 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 3/111 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRIR R + Q L + + EKG L I++ L P+ + Sbjct: 4 VELGKRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVY 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F D ++ E + + Q + F + + + I+++ Sbjct: 63 FLDEDYVEKEELKKELAKYKNILEKFLTAQ--KAFDNKNYEEAIKLYIDIL 111 >gi|307264993|ref|ZP_07546554.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306919978|gb|EFN50191.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 436 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 3/111 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRIR R + Q L + + EKG L I++ L P+ + Sbjct: 4 VELGKRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVY 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F D ++ E + + Q + F + + + I+++ Sbjct: 63 FLDEDYVEKEELKKELAKYKNILEKFLTAQ--KAFDNKNYEEAIKLYIDIL 111 >gi|302545536|ref|ZP_07297878.1| HTH_3 family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302463154|gb|EFL26247.1| HTH_3 family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 81 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 29/65 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V R+ + R +S++ L E +G+ +Q + E+G ++E + P+ Sbjct: 4 QVHNRLAMVRAERKVSRQALAEAVGVHYQTIGYIERGQYNPSLDLALRVAEFFDLPVEAL 63 Query: 74 FDVSP 78 F + P Sbjct: 64 FSLRP 68 >gi|302875737|ref|YP_003844370.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|307689168|ref|ZP_07631614.1| helix-turn-helix domain-containing protein [Clostridium cellulovorans 743B] gi|302578594|gb|ADL52606.1| helix-turn-helix domain protein [Clostridium cellulovorans 743B] Length = 434 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R G + + L IT Q+ E G + L++++ L + + Sbjct: 6 LGEKIKRLRKEKGFTLKDL-AGDRITPGQISLVESGKSNPSMDLLEYLANTLHCTVEYLM 64 Query: 75 DVSPTVCSDI 84 + T I Sbjct: 65 ESEETQAEKI 74 >gi|294813286|ref|ZP_06771929.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|294325885|gb|EFG07528.1| regulatory protein [Streptomyces clavuligerus ATCC 27064] Length = 303 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 9/118 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 G + P +G R+ R GM+ E G+ G++ V +YE+ V + ++ Sbjct: 15 SGEENEPTARRRQLGFRLLALREQRGMTAEHAGDLAGLSKATVSRYERAKGNVRWNHVEM 74 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN---RYFIQIDDVKVR 116 + + ++ + V D P +L R ++D R Sbjct: 75 LCRAYGAS------DEEREALVDLAKNSKVKDGWWVPYATKLAQPMRLLYAVEDEATR 126 >gi|223986918|ref|ZP_03636894.1| hypothetical protein HOLDEFILI_04217 [Holdemania filiformis DSM 12042] gi|223961112|gb|EEF65648.1| hypothetical protein HOLDEFILI_04217 [Holdemania filiformis DSM 12042] Length = 86 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 22/64 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R +SQ +L + + +T Q + E G I+ + I F Sbjct: 23 NRVQELRKQRRLSQSELADAVEVTRQTIISLENGKYNASLMLAHKIARYFDLTIEEVFLF 82 Query: 77 SPTV 80 Sbjct: 83 EEDE 86 >gi|197287313|ref|YP_002153185.1| transcriptional regulator [Proteus mirabilis HI4320] gi|194684800|emb|CAR46871.1| putative transcriptional regulator [Proteus mirabilis HI4320] Length = 85 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 37/83 (44%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ VGKRI+ RR L +S K+ LG+T Q K E G ++ L I+ +L+ Sbjct: 3 INTVVGKRIQNRRKELNISSSKIALQLGMTEQYYLKLENGYTKITVDELICIAIILKVSP 62 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 S + S+ NN Sbjct: 63 QSLLLKSTVSQQNRDSQLNNYYH 85 >gi|254384564|ref|ZP_04999904.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194343449|gb|EDX24415.1| DNA-binding protein [Streptomyces sp. Mg1] Length = 389 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 9/114 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R + M+++ + LG+T V +YE GV++ + ++E+L P++FF Sbjct: 30 RLTQARRLAEMTKKDVATQLGVTPAAVGQYETGVSKPRPDLIPRLAEILGVPVTFFLLGR 89 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 P D +S + + + F +++ EL ++ + Sbjct: 90 PANRLD-ASMAHFRSLRSTPKSQRERALAFA--------EQVWELTYALEQRIQ 134 >gi|153816198|ref|ZP_01968866.1| hypothetical protein RUMTOR_02446 [Ruminococcus torques ATCC 27756] gi|317500518|ref|ZP_07958741.1| hypothetical protein HMPREF1026_00684 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089382|ref|ZP_08338281.1| hypothetical protein HMPREF1025_01864 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846533|gb|EDK23451.1| hypothetical protein RUMTOR_02446 [Ruminococcus torques ATCC 27756] gi|316898107|gb|EFV20155.1| hypothetical protein HMPREF1026_00684 [Lachnospiraceae bacterium 8_1_57FAA] gi|330404750|gb|EGG84288.1| hypothetical protein HMPREF1025_01864 [Lachnospiraceae bacterium 3_1_46FAA] Length = 95 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 26/60 (43%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG+ IR RM + Q L + L I+ Q + YE+G+ L I++ + Sbjct: 29 AVGENIRRLRMRNQLKQADLAQKLNISRQSLSAYERGITLPDIYLLIEIADFFRISLDEL 88 >gi|116696126|ref|YP_841702.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113530625|emb|CAJ96972.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 204 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 ++P+ ++ +VG IR R+ ++ ++ E G++ + K E G G L I+ Sbjct: 10 EAQVPH-IEESVGMVIRELRLRERLTIAQVAEQAGLSRGMLSKIETGSTMAGMDTLARIA 68 Query: 64 EVLESPISFFFDVSPTVCSDI 84 L P++ F + Sbjct: 69 RALGVPMAVLFSKYDGASAAA 89 >gi|91777058|ref|YP_546814.1| XRE family transcriptional regulator [Methylobacillus flagellatus KT] gi|91711045|gb|ABE50973.1| transcriptional regulator, XRE family [Methylobacillus flagellatus KT] Length = 116 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 9/98 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R++ R LG+SQ+ L + LG++ + Q YE G L I+ L + + + Sbjct: 4 IHERLKTEREALGLSQQALADQLGVSLRSQQNYEAGKRVPDGEYLAAIAS-LGADVLYIL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + S + L F + Sbjct: 63 TGQRNSAAPAESAL--------SKGDRVLLENFHAAPE 92 >gi|77360469|ref|YP_340044.1| DNA binding protein [Pseudoalteromonas haloplanktis TAC125] gi|76875380|emb|CAI86601.1| putative DNA binding protein [Pseudoalteromonas haloplanktis TAC125] Length = 133 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 6/105 (5%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R LG SQE G+T YE G A L + + F F+ + Sbjct: 12 LKFERKRLGFSQEHFANLCGVTRGSQANYESGSRTPDADYLTA-AIKAGCDLEFLFNGTR 70 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 + D ++ E+ ++ + L ++ + + I L Sbjct: 71 SKQLDEAALED-CIEILEDA----LVLAGRKLTAKQKARVICVLY 110 >gi|49482914|ref|YP_040138.1| DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|258422580|ref|ZP_05685487.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|282903282|ref|ZP_06311173.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C160] gi|282905066|ref|ZP_06312924.1| DNA-binding protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908042|ref|ZP_06315873.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282921517|ref|ZP_06329235.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|283957486|ref|ZP_06374939.1| DNA-binding protein [Staphylococcus aureus subsp. aureus A017934/97] gi|295427234|ref|ZP_06819869.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590417|ref|ZP_06949056.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus MN8] gi|49241043|emb|CAG39718.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257847232|gb|EEV71239.1| conserved hypothetical protein [Staphylococcus aureus A9635] gi|270055331|gb|ACZ58824.1| hypothetical protein SAP033A_008 [Staphylococcus aureus] gi|270300061|gb|ACZ68867.1| hypothetical protein SAP076A_042 [Staphylococcus aureus] gi|270300067|gb|ACZ68873.1| hypothetical protein SAP077A_006 [Staphylococcus aureus] gi|270300132|gb|ACZ68938.1| hypothetical protein SAP078A_013 [Staphylococcus aureus] gi|270300177|gb|ACZ68983.1| hypothetical protein SAP054A_013 [Staphylococcus aureus] gi|270300380|gb|ACZ69186.1| hypothetical protein SAP067A_013 [Staphylococcus aureus] gi|270300493|gb|ACZ69299.1| hypothetical protein SAP075A_013 [Staphylococcus aureus] gi|281334480|gb|ADA61564.1| hypothetical protein SAP019A_018 [Staphylococcus aureus] gi|282166762|gb|ADA80778.1| hypothetical protein SAP102A_031 [Staphylococcus aureus] gi|282315932|gb|EFB46316.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282327707|gb|EFB57989.1| DNA-binding protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331891|gb|EFB61402.1| DNA-binding protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282596237|gb|EFC01198.1| DNA-binding protein [Staphylococcus aureus subsp. aureus C160] gi|283790937|gb|EFC29752.1| DNA-binding protein [Staphylococcus aureus subsp. aureus A017934/97] gi|295128622|gb|EFG58253.1| DNA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576716|gb|EFH95431.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus MN8] gi|315192996|gb|EFU23400.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus CGS00] Length = 113 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ +R + SQE+L L ++ Q V K+E N L +S++ + Sbjct: 1 MKLAEAIKEQRELKRWSQEELANILKVSRQSVSKWESAKNYPSLDILIAMSDLFGISLEH 60 Query: 73 FFDVS 77 Sbjct: 61 LIKGD 65 >gi|13474794|ref|NP_106364.1| transcriptional regulatory protein [Mesorhizobium loti MAFF303099] gi|14025550|dbj|BAB52150.1| transcriptional regulatory protein [Mesorhizobium loti MAFF303099] Length = 75 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 22/66 (33%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R G++QE++ G + Q + E+G L +S+ L Sbjct: 10 VGTNFARLRREKGLTQEQVEARSGYSQQYLSSLERGRRNPTVITLFELSQALGVSHVELV 69 Query: 75 DVSPTV 80 Sbjct: 70 KPDEDS 75 >gi|328475108|gb|EGF45892.1| hypothetical protein LM220_00660 [Listeria monocytogenes 220] Length = 114 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 6/85 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEV 65 +PN + R+ L R G S+ + LG+ +E G+ + I+ + Sbjct: 1 MPN-----LSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATL 55 Query: 66 LESPISFFFDVSPTVCSDISSEENN 90 + + + S +N Sbjct: 56 YDVSVDYLLGQQSIPTYAPSELQNE 80 >gi|325264845|ref|ZP_08131573.1| putative helix-turn-helix protein [Clostridium sp. D5] gi|324029834|gb|EGB91121.1| putative helix-turn-helix protein [Clostridium sp. D5] Length = 693 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+ R ++Q ++ E LGI+ YE G L I++V + Sbjct: 8 ERLTALRTGSSLTQTQMAELLGISRSTYANYEVGKRTPDLKMLIKIADVFTCSLDEL 64 >gi|319744698|gb|EFV97043.1| transcriptional regulator [Streptococcus agalactiae ATCC 13813] Length = 168 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 32/95 (33%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 11 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 70 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + ++ I L++ + Sbjct: 71 VGEDKMLTPVEDYHLTLKVEVIKERGAAILSKLYR 105 >gi|315149776|gb|EFT93792.1| putative flagellar protein FliS [Enterococcus faecalis TX0012] Length = 279 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+ IR R G++Q+ + + + +T + E+ ++ I + L + F Sbjct: 3 GQTIRKIRKDKGLTQKDVCQGV-VTLSYYSRIERNISTPTIDIFMEIIKNLNVRLEEFM 60 >gi|312961935|ref|ZP_07776432.1| putative transcriptional regulator [Pseudomonas fluorescens WH6] gi|311283745|gb|EFQ62329.1| putative transcriptional regulator [Pseudomonas fluorescens WH6] Length = 178 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 34/98 (34%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++R+ R +G++ E+L G+T + K E+GV+ + +++ L + F Sbjct: 4 QLRILRKKMGITLEQLAGLTGLTKSYLSKVERGVSSPSIAVALKLAKALNAQAEELFSTE 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKV 115 S D + I + Sbjct: 64 AVPAEGYSLVRRQQRDANDGAAPVAHVPLARHIGQRAL 101 >gi|302186784|ref|ZP_07263457.1| XRE family transcriptional regulator [Pseudomonas syringae pv. syringae 642] Length = 74 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R G SQE+L G+ + E+G + + ++E L D Sbjct: 10 GLRLIEIRKAKGWSQERLALESGLARSYLGGVERGQRNIALLNIYKLAEALAVTPGSLMD 69 >gi|296268477|ref|YP_003651109.1| XRE family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091264|gb|ADG87216.1| transcriptional regulator, XRE family [Thermobispora bispora DSM 43833] Length = 145 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 12/121 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ IR +R +S +L ++ + + E+G+ + A L I++ L + Sbjct: 9 LGEFIRQQRQQAKISLRQLAAQASVSTPYLSQVERGLRKPSAEILNQIAKALSISAQALY 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + + T D L R + + + RQ +I++ S + Sbjct: 69 ERAGLIENGDG-----------TSDVLTAIRADMTLT-PRQRQVLIDIYESFRKENRAAS 116 Query: 135 T 135 Sbjct: 117 A 117 >gi|149203543|ref|ZP_01880513.1| DNA-binding protein, putative [Roseovarius sp. TM1035] gi|149143376|gb|EDM31415.1| DNA-binding protein, putative [Roseovarius sp. TM1035] Length = 190 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ L E LG + + + E+ ++ S L+ ++EVL P+S F Sbjct: 12 LGADLRALRKARGLTLAALAEMLGRSVGWLSQVERDLSEPSISDLRQVAEVLGVPMSLLF 71 Query: 75 DVSPTVCSD 83 + + Sbjct: 72 GHASAPAEE 80 >gi|57234333|ref|YP_181610.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57234921|ref|YP_181022.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57234968|ref|YP_180999.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57224781|gb|AAW39838.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57225369|gb|AAW40426.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] gi|57225416|gb|AAW40473.1| transcriptional repressor LexA, putative [Dehalococcoides ethenogenes 195] Length = 217 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 1/84 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFF 73 +G ++ R +GM+Q +L G+ + + E G Q ++ L+ S Sbjct: 7 IGITLKELRKKIGMTQSELARRSGVDRAYISQLESGKTYSATLGIAQKLARGLDISTSAL 66 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 ++ S + + Sbjct: 67 LGEKEESLGNLLSRAQAISRRMDD 90 >gi|86157573|ref|YP_464358.1| XRE family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|197121618|ref|YP_002133569.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|220916382|ref|YP_002491686.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|85774084|gb|ABC80921.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-C] gi|196171467|gb|ACG72440.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] gi|219954236|gb|ACL64620.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 69 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 25/59 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R R +SQ+ L + +GI+ V E+G ++ +++ L P + Sbjct: 10 NVRRLRSKKNLSQKALADKVGISVSYVSMLERGQRSPPLETIEKMAKALGVPPAALLGG 68 >gi|318061628|ref|ZP_07980349.1| hypothetical protein SSA3_27058 [Streptomyces sp. SA3_actG] Length = 77 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG RIR R+ ++QE L E G+ + + + E G + + I+ L P++ Sbjct: 15 RAVGDRIRTARLEAAITQETLAERTGLDRKTIVRTESGTHSTLLDHVLLIARALGRPLAD 74 Query: 73 F 73 Sbjct: 75 L 75 >gi|300115617|ref|YP_003762191.1| XRE family transcriptional regulator [Nitrosococcus watsoni C-113] gi|299541559|gb|ADJ29870.1| transcriptional regulator, XRE family [Nitrosococcus watsonii C-113] Length = 76 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 VGK I+ R+ G++Q +L + I + K E+G N V L+ I++ L+ + Sbjct: 3 VGKNIKGLRIAAGLTQTQLAKKAHIDQSGLSKIERGENESVTLPMLRKIAKALDCSVVAL 62 Query: 74 FDVSP 78 + Sbjct: 63 LEDED 67 >gi|294498960|ref|YP_003562660.1| putative transcriptional regulator SinR [Bacillus megaterium QM B1551] gi|295704284|ref|YP_003597359.1| transcription regulator SinR [Bacillus megaterium DSM 319] gi|294348897|gb|ADE69226.1| probable transcription regulator sinR [Bacillus megaterium QM B1551] gi|294801943|gb|ADF39009.1| probable transcription regulator sinR [Bacillus megaterium DSM 319] Length = 111 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 1/78 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPIS 71 + +G+RIR R G+S +L G+ + E+G L IS L I Sbjct: 1 MTIGQRIRDLRTKQGISLTELANRAGVAKSYISSVERGIQLNPSIQFLNKISTSLNVSID 60 Query: 72 FFFDVSPTVCSDISSEEN 89 + ++ Sbjct: 61 RLIHEPMDKSESLDIDDE 78 >gi|257422321|ref|ZP_05599311.1| predicted protein [Enterococcus faecalis X98] gi|257164145|gb|EEU94105.1| predicted protein [Enterococcus faecalis X98] gi|315156032|gb|EFU00049.1| helix-turn-helix protein [Enterococcus faecalis TX0043] Length = 279 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 11/93 (11%), Positives = 33/93 (35%), Gaps = 1/93 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R G++Q+ + + + +T + E+ ++ I + L + F Sbjct: 3 GQTIRKIRKDKGLTQKDVCQGV-VTLSYYSRIERNISTPTIDIFMEIIKNLNVRLEEFMY 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + + + + ++ + Sbjct: 62 IHNDYQKALKDQTWFEITELYHAGNMKSLEDYK 94 >gi|238921831|ref|YP_002935345.1| hypothetical protein EUBELI_20064 [Eubacterium eligens ATCC 27750] gi|238873503|gb|ACR73211.1| Hypothetical protein EUBELI_20064 [Eubacterium eligens ATCC 27750] Length = 111 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 5/106 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G R++ RR + + Q + + LG++ + E G L I +L + Sbjct: 6 VNIGPRLKQRRKEMHIKQIDMAKQLGVSQAFLSNVEAGRINCSLPLLTDICCILNVTPDY 65 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 S + + + + +I D V +K Sbjct: 66 LILGHMRGNKASSDLIDELKMCNT-----EELEAIKRIVDAFVIKK 106 >gi|226322382|ref|ZP_03797900.1| hypothetical protein COPCOM_00150 [Coprococcus comes ATCC 27758] gi|225209240|gb|EEG91594.1| hypothetical protein COPCOM_00150 [Coprococcus comes ATCC 27758] gi|295108685|emb|CBL22638.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 209 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G R + RR+ L ++Q + E +G+T + +YE G + +SE L I + Sbjct: 10 IGSRAKQRRLELNLTQPYVAEKMGVTASTILRYENGSIDNTKKMVLEGLSEALHVSIEWL 69 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + +DI+ ++ + QL + +D + ++ +++ Sbjct: 70 RGETNEYETDITDKKELQIRDAMGDILKQLPLDLSKKEDAFSKDLLLLMLKQ 121 >gi|225175746|ref|ZP_03729739.1| helix-turn-helix domain protein [Dethiobacter alkaliphilus AHT 1] gi|225168670|gb|EEG77471.1| helix-turn-helix domain protein [Dethiobacter alkaliphilus AHT 1] Length = 406 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 11/141 (7%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K+ + + +R R G+SQ ++ GI+ + E G + S LQ+I++ Sbjct: 24 KMDH---KMISINLRRVREEKGLSQSEVAHLAGISRVAYGRIESGASIPKVSTLQNIADG 80 Query: 66 LESPISFFF----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ + F + + L+ Y ++ K K + Sbjct: 81 IDIKLQDLFVPVSTLKKVRFRATKKMNSRDSILTEVNRWLENFNYLEKLLKDKHEYKFSK 140 Query: 122 LVRSI----VSSEKKYRTIEE 138 L + + E+ ++ Sbjct: 141 LAQELSAMPAGHERAKVAADK 161 >gi|223042656|ref|ZP_03612705.1| conserved domain protein [Staphylococcus capitis SK14] gi|314934552|ref|ZP_07841911.1| DNA-binding protein [Staphylococcus caprae C87] gi|222444319|gb|EEE50415.1| conserved domain protein [Staphylococcus capitis SK14] gi|313652482|gb|EFS16245.1| DNA-binding protein [Staphylococcus caprae C87] Length = 62 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 21/59 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 I R + +SQE L + LG++ Q + E +++ + F Sbjct: 3 NNILYYRKKMKISQETLSKNLGVSRQTINAIENNKYDPSLVLAFKLAKQFSVTVDELFT 61 >gi|218232808|ref|YP_002367302.1| transcriptional regulator [Bacillus cereus B4264] gi|229127969|ref|ZP_04256953.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] gi|218160765|gb|ACK60757.1| transcriptional regulator [Bacillus cereus B4264] gi|228655531|gb|EEL11385.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4] Length = 116 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 47/118 (39%), Gaps = 7/118 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R+ M+QE+ G+ + +T V K+E G ++ I++ P+++ + + Sbjct: 6 RIKQIRIDNKMNQEQFGKEVDLTKGTVSKFENGKAFPSRETIEKIAKRFNVPVNYLYGEN 65 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 S + + ++ + + ++++ + +++ K Sbjct: 66 KDDDSSDDKYKKF-------KEIMEWLEPLPKDKEDMALEQMLAIAQALSKHHNKTEK 116 >gi|206974526|ref|ZP_03235442.1| transcriptional regulator AnsR [Bacillus cereus H3081.97] gi|217960545|ref|YP_002339109.1| transcriptional regulator AnsR [Bacillus cereus AH187] gi|222096605|ref|YP_002530662.1| ans operon repressor protein [Bacillus cereus Q1] gi|206747169|gb|EDZ58560.1| transcriptional regulator AnsR [Bacillus cereus H3081.97] gi|217065208|gb|ACJ79458.1| transcriptional regulator AnsR [Bacillus cereus AH187] gi|221240663|gb|ACM13373.1| ans operon repressor protein [Bacillus cereus Q1] Length = 125 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 4/122 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R S ++ + LGI YE G L I+++ ++ + + Sbjct: 3 ERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYILGR 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + + + L + ++ I VRS K Sbjct: 63 IEHSHQNKDVID---ITRLLNDPDPTLLIDGEALSTEEIID-FIAFVRSKRELSSKRIEN 118 Query: 137 EE 138 E Sbjct: 119 IE 120 >gi|120435188|ref|YP_860874.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] gi|117577338|emb|CAL65807.1| HTH_3 family transcriptional regulator protein [Gramella forsetii KT0803] Length = 64 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R M+Q +L + G++ Q + EKG S + + I FD Sbjct: 3 NRLKVLRAEYNMTQAQLADETGVSRQTINAIEKGKFDPSLPLAFRFSRLFKLKIEEIFDD 62 Query: 77 SP 78 Sbjct: 63 EE 64 >gi|15789706|ref|NP_279530.1| hypothetical protein VNG0471C [Halobacterium sp. NRC-1] gi|169235420|ref|YP_001688620.1| transcription regulator-like protein [Halobacterium salinarum R1] gi|10580078|gb|AAG19010.1| conserved hypothetical protein [Halobacterium sp. NRC-1] gi|167726486|emb|CAP13271.1| transcription regulator homolog [Halobacterium salinarum R1] Length = 66 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R RR +SQ L +G+T Q + E+ +++ + I FD Sbjct: 5 VRERRGEADLSQADLAAAVGVTRQTINAIERDRYDPSIELAFKLADFFDCRIEDLFDPE 63 >gi|85544221|pdb|2B5A|A Chain A, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|85544222|pdb|2B5A|B Chain B, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|85544223|pdb|2B5A|C Chain C, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|85544224|pdb|2B5A|D Chain D, C.Bcli, Control Element Of The Bcli Restriction- Modification System gi|311977251|gb|ADQ20505.1| C.BclI [Bacillus caldolyticus] Length = 77 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 30/70 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + G+ ++ R G+SQE+L + G+ + + E+G + + I L+ P Sbjct: 7 IKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAALDIPA 66 Query: 71 SFFFDVSPTV 80 S FF Sbjct: 67 STFFRKMEEE 76 >gi|223932178|ref|ZP_03624182.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] gi|223899159|gb|EEF65516.1| transcriptional regulator, XRE family [Streptococcus suis 89/1591] Length = 158 Score = 41.7 bits (96), Expect = 0.030, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 1 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + ++ I L++ + Sbjct: 61 VGEDKMLTPVEDYQLTLKVEVIKERGAAILSQLYR 95 >gi|324991594|gb|EGC23527.1| transcriptional regulator [Streptococcus sanguinis SK353] Length = 158 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 12/95 (12%), Positives = 32/95 (33%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R ++Q + +GI+ + +YE G++ + + I + Sbjct: 1 MIGDNIKYLRKTNELTQPEFARIVGISRNSLSRYENGISPISTELIDTICQKFNVSYVDI 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + ++ + L R + Sbjct: 61 VGEEKMLNPVEDYKLTLKIEIVKERGTNLLARLYR 95 >gi|317133336|ref|YP_004092650.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315471315|gb|ADU27919.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 147 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 14/115 (12%), Positives = 45/115 (39%), Gaps = 2/115 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP- 69 + + +R++ R+ ++ ++G +G + + V +E + A L + ++ Sbjct: 7 IKQVLAERLKYFRIKNKLTANQVGVMIGKSGKTVNAWEHCHGQPDADTLLRLCKIYSISN 66 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 I+ + + + S + + + L L F Q+ + ++ ++ Sbjct: 67 INELYGKPFELEESVDSTSCDSDNIRISNIDLHLLSLFHQL-NNAGKEAVLTAAE 120 >gi|313607249|gb|EFR83697.1| gp33 [Listeria monocytogenes FSL F2-208] Length = 162 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 13/118 (11%), Positives = 44/118 (37%), Gaps = 4/118 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 +++ R G S+ ++ + LG+ +E G L+ I+++ + + + Sbjct: 6 EKLEYLRNRKGWSKVEVAKRLGMKASSTYSNWEYGNREPDLDTLKRIADLYDVSVDYLLG 65 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVRSIVSSEKK 132 + + +D +T + ++ +I+ ++ + + +K+ Sbjct: 66 RTE--KNSTIETIAAHIDPNATDEEIRDILAYIEEKRKEHTNEEAVNIAEIAAKEDKE 121 >gi|312199300|ref|YP_004019361.1| Cupin 2 conserved barrel domain protein [Frankia sp. EuI1c] gi|311230636|gb|ADP83491.1| Cupin 2 conserved barrel domain protein [Frankia sp. EuI1c] Length = 206 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 30/74 (40%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + V VG R+R R ++ +L + GI+ + + E G ++ L ++ + Sbjct: 15 DDVLAAVGPRLRALRHEREVTLPQLSQATGISVSTLSRLESGQRKLTLELLLPLARAHQV 74 Query: 69 PISFFFDVSPTVCS 82 P+ PT Sbjct: 75 PLDELVGHPPTADP 88 >gi|257438000|ref|ZP_05613755.1| putative toxin-antitoxin system, toxin component [Faecalibacterium prausnitzii A2-165] gi|257199660|gb|EEU97944.1| putative toxin-antitoxin system, toxin component [Faecalibacterium prausnitzii A2-165] Length = 96 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 1/86 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 GKR+ R G++QE+L LG+ + Q V + E G L +S +L Sbjct: 6 KEFGKRLHDVRTSRGITQEELAVRLGLASKQHVSRMENGERSCSIDLLIELSCILHVSTD 65 Query: 72 FFFDVSPTVCSDISSEENNVMDFIST 97 + S + ++ +++ +ST Sbjct: 66 YLLMGSEPSKEKVKNDLLSIISELST 91 >gi|225377155|ref|ZP_03754376.1| hypothetical protein ROSEINA2194_02801 [Roseburia inulinivorans DSM 16841] gi|225211060|gb|EEG93414.1| hypothetical protein ROSEINA2194_02801 [Roseburia inulinivorans DSM 16841] Length = 153 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 30/56 (53%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + I+ R+ G++Q++L + + +T Q + K+E G + + L + + L+ Sbjct: 1 MEISDLIKSARIEKGLTQQQLADVVFVTRQTISKWELGKSVPDQASLILLYQYLDI 56 >gi|168750476|ref|ZP_02775498.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|168757678|ref|ZP_02782685.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|168783674|ref|ZP_02808681.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|168802673|ref|ZP_02827680.1| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|195937964|ref|ZP_03083346.1| phage-related repressor protein [Escherichia coli O157:H7 str. EC4024] gi|208819582|ref|ZP_03259902.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] gi|188015290|gb|EDU53412.1| putative repressor protein [Escherichia coli O157:H7 str. EC4113] gi|188999040|gb|EDU68026.1| putative repressor protein [Escherichia coli O157:H7 str. EC4076] gi|189355373|gb|EDU73792.1| putative repressor protein [Escherichia coli O157:H7 str. EC4401] gi|189375389|gb|EDU93805.1| putative repressor protein [Escherichia coli O157:H7 str. EC508] gi|208739705|gb|EDZ87387.1| putative repressor protein [Escherichia coli O157:H7 str. EC4042] Length = 229 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 7 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWLSSG 65 Query: 77 SPTVCSDISS 86 + Sbjct: 66 VGNMSDSTVQ 75 >gi|160914768|ref|ZP_02076982.1| hypothetical protein EUBDOL_00775 [Eubacterium dolichum DSM 3991] gi|158433308|gb|EDP11597.1| hypothetical protein EUBDOL_00775 [Eubacterium dolichum DSM 3991] Length = 69 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 KRI++ R+ MSQE L + +G T Q + E G I + L + F Sbjct: 4 KRIKIARLECDMSQEDLAKAVGATRQTIGLIEAGNYNPSLKLCLAICKALNKTLDDLFWE 63 Query: 77 S 77 Sbjct: 64 E 64 >gi|126651901|ref|ZP_01724102.1| Transcriptional regulator, MerR family protein [Bacillus sp. B14905] gi|126591369|gb|EAZ85477.1| Transcriptional regulator, MerR family protein [Bacillus sp. B14905] Length = 119 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 35/83 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I+ R + ++QE+L E G+ + E+G + L I + LE S F Sbjct: 8 VGSNIKEIRKLKKLTQEELAEKCGLQTSYLAGVERGDRNITIQTLDKIIDGLEETPSNIF 67 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 + ++ E+ ++ + Sbjct: 68 NFDTLNFNNKYFEKKELIMILQN 90 >gi|167039343|ref|YP_001662328.1| TPR repeat-containing protein [Thermoanaerobacter sp. X514] gi|256752343|ref|ZP_05493204.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter ethanolicus CCSD1] gi|300913983|ref|ZP_07131300.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter sp. X561] gi|307725334|ref|YP_003905085.1| helix-turn-helix domain-containing protein [Thermoanaerobacter sp. X513] gi|166853583|gb|ABY91992.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter sp. X514] gi|256748754|gb|EEU61797.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter ethanolicus CCSD1] gi|300890668|gb|EFK85813.1| Tetratricopeptide TPR_2 repeat protein [Thermoanaerobacter sp. X561] gi|307582395|gb|ADN55794.1| helix-turn-helix domain protein [Thermoanaerobacter sp. X513] Length = 436 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 3/111 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRIR R + Q L + + EKG L I++ L P+ + Sbjct: 4 VELGKRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVY 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F D ++ E + + Q + F + + + I+++ Sbjct: 63 FLDEDYVEKEELKKELAKYKNILEKFLTAQ--KAFDNKNYEEAIKLYIDIL 111 >gi|47570199|ref|ZP_00240853.1| cI-like repressor [Bacillus cereus G9241] gi|228983330|ref|ZP_04143544.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229153853|ref|ZP_04281984.1| Transcriptional regulator Xre [Bacillus cereus ATCC 4342] gi|47553143|gb|EAL11540.1| cI-like repressor [Bacillus cereus G9241] gi|228629657|gb|EEK86353.1| Transcriptional regulator Xre [Bacillus cereus ATCC 4342] gi|228776444|gb|EEM24796.1| Transcriptional regulator Xre [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 67 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 28/59 (47%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+RIR R + G +QE + LG++ + + E+G + +++ L+ I Sbjct: 7 GRRIRAFRKLKGYTQEGFAKELGVSVSVLGEVERGNRSPSQDFVVEVAKALKISIDELM 65 >gi|318057395|ref|ZP_07976118.1| hypothetical protein SSA3_05613 [Streptomyces sp. SA3_actG] gi|318076536|ref|ZP_07983868.1| hypothetical protein SSA3_07397 [Streptomyces sp. SA3_actF] Length = 77 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG RIR R+ ++QE L E G+ + + + E G + L I+ L P++ Sbjct: 15 RAVGDRIRTARLEAAITQETLAERTGLDRKTIVRTEGGTHSTLLDHLLLIARALGRPLAD 74 Query: 73 F 73 Sbjct: 75 L 75 >gi|312902013|ref|ZP_07761275.1| helix-turn-helix protein [Enterococcus faecalis TX0470] gi|311290949|gb|EFQ69505.1| helix-turn-helix protein [Enterococcus faecalis TX0470] Length = 74 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 24/50 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 G++IR RM +SQ +L L ++ Q + +E G R L IS Sbjct: 21 GEKIRKYRMEKNLSQVELSSILLVSRQTISNWENGRTRPEMENLVLISNF 70 >gi|300902558|ref|ZP_07120535.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|301301996|ref|ZP_07208129.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|300405371|gb|EFJ88909.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300842548|gb|EFK70308.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|315253734|gb|EFU33702.1| peptidase S24-like domain protein [Escherichia coli MS 85-1] Length = 230 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 1/93 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPIS 71 +N+G R+R R M L E +G+ + + E G + + +I+ L I+ Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQALSNIARSLGVDIA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + + + + + +++ Sbjct: 61 DLFTSDVKSNTVCKNSISEDVAQVKDVFRIEML 93 >gi|300715975|ref|YP_003740778.1| transcriptional regulator [Erwinia billingiae Eb661] gi|299061811|emb|CAX58927.1| predicted transcriptional regulator [Erwinia billingiae Eb661] Length = 188 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D + +R+ R+ G S E L E GI+ + + E+G A+ + + +S Sbjct: 8 DRRLAQRLADLRLEKGWSLETLAELTGISRASLSRIERGETSPTAALMNRLCIAYGLTMS 67 Query: 72 FFFDVSPTVCSDISS 86 + Sbjct: 68 RLLSEVEEQGPQLLR 82 >gi|288817843|ref|YP_003432190.1| putative phage repressor [Hydrogenobacter thermophilus TK-6] gi|288787242|dbj|BAI68989.1| putative phage repressor [Hydrogenobacter thermophilus TK-6] gi|308751440|gb|ADO44923.1| putative phage repressor [Hydrogenobacter thermophilus TK-6] Length = 220 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 32/79 (40%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++++ G+S +L + G+T + V + L+ I+E L P +F Sbjct: 15 FIGEKLKKLLQEKGLSIYRLAKLTGLTQSGLSMIINNQRAVSPAILRKIAETLNIPEVYF 74 Query: 74 FDVSPTVCSDISSEENNVM 92 + PT S E Sbjct: 75 IEEEPTKEYPPSPEVIERE 93 >gi|257879532|ref|ZP_05659185.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257883466|ref|ZP_05663119.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|294622463|ref|ZP_06701485.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] gi|257813760|gb|EEV42518.1| conserved hypothetical protein [Enterococcus faecium 1,230,933] gi|257819124|gb|EEV46452.1| conserved hypothetical protein [Enterococcus faecium 1,231,502] gi|291598010|gb|EFF29120.1| transcriptional regulator, Cro/CI family [Enterococcus faecium U0317] Length = 234 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 12/107 (11%), Positives = 40/107 (37%), Gaps = 2/107 (1%) Query: 17 KRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 + ++ R + Q++L E L + + ++EKG L I+++ I + Sbjct: 4 ENLKFLREKYNIDQQELAEKLGRKSSSSISEWEKGKYTPKLKTLNEIAKIFNVDIDDLMN 63 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + ++ + I + ++ + + ++ +++ Sbjct: 64 IDLSISNQIYNILPIYNQLNDENKVATYEFASNRL-EEQKQENVLDF 109 >gi|255262954|ref|ZP_05342296.1| DNA-binding protein [Thalassiobium sp. R2A62] gi|255105289|gb|EET47963.1| DNA-binding protein [Thalassiobium sp. R2A62] Length = 190 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ L E L + + + E+G++ + L+H++ L+ +S F Sbjct: 12 LGADLRALRKARGLTLVDLAETLDRSVGWLSQVERGMSEPSVTDLRHLAAALDVSVSSLF 71 >gi|256423770|ref|YP_003124423.1| XRE family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038678|gb|ACU62222.1| transcriptional regulator, XRE family [Chitinophaga pinensis DSM 2588] Length = 114 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 35/87 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR+ R +SQ+++ + +G+ + +YE+ + +I+ LE + + Sbjct: 7 GKRLTEVRKDKKLSQDEIAKKVGVHGAVIGRYERDEVKPSIEMAANIAAALEVSLDYLVG 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 + + + + +S D Sbjct: 67 NTDLLLDQTILDRIMDIQKLSDQDKAD 93 >gi|218893591|ref|YP_002442460.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218773819|emb|CAW29633.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 187 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 1/92 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD +G+R+R R + ++ G+T + + E+ + V S L +I++ L P+ Sbjct: 3 VDR-IGERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPL 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + FD D E P + Sbjct: 62 NALFDQPAQPQPDSHEGERVRYTIEGQPLAYE 93 >gi|307154678|ref|YP_003890062.1| XRE family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984906|gb|ADN16787.1| transcriptional regulator, XRE family [Cyanothece sp. PCC 7822] Length = 83 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 27/48 (56%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +GK IR R+ LGM+QE+ LG+ + V ++E G + L+ I Sbjct: 14 IGKLIRSIRLELGMTQEQFAAYLGVVYPTVNRWENGHTQPSLMALRLI 61 >gi|152985673|ref|YP_001350449.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960831|gb|ABR82856.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 187 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 1/92 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD +G+R+R R + ++ G+T + + E+ + V S L +I++ L P+ Sbjct: 3 VDR-IGERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPL 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + FD D E P + Sbjct: 62 NALFDQPAQPQPDSHEGERVRYTIEGQPLAYE 93 >gi|49082636|gb|AAT50718.1| PA4499 [synthetic construct] Length = 188 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 1/92 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD +G+R+R R + ++ G+T + + E+ + V S L +I++ L P+ Sbjct: 3 VDR-IGERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPL 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + FD D E P + Sbjct: 62 NALFDQPAQPQPDSHEGERVRYTIEGQPLAYE 93 >gi|150390025|ref|YP_001320074.1| XRE family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149949887|gb|ABR48415.1| transcriptional regulator, XRE family [Alkaliphilus metalliredigens QYMF] Length = 64 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R LG+ QE + LG+T Q + E ++ L++ + F + Sbjct: 3 NKLKTLRKELGLRQEDVANQLGVTRQTIIAIENDKYNPTLELAMKLARFLDTTVEELFQL 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|15599695|ref|NP_253189.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107099916|ref|ZP_01363834.1| hypothetical protein PaerPA_01000937 [Pseudomonas aeruginosa PACS2] gi|116052530|ref|YP_792844.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|254238841|ref|ZP_04932164.1| hypothetical protein PACG_05007 [Pseudomonas aeruginosa C3719] gi|254244690|ref|ZP_04938012.1| hypothetical protein PA2G_05559 [Pseudomonas aeruginosa 2192] gi|296391210|ref|ZP_06880685.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313107088|ref|ZP_07793288.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|9950738|gb|AAG07887.1|AE004863_7 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115587751|gb|ABJ13766.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126170772|gb|EAZ56283.1| hypothetical protein PACG_05007 [Pseudomonas aeruginosa C3719] gi|126198068|gb|EAZ62131.1| hypothetical protein PA2G_05559 [Pseudomonas aeruginosa 2192] gi|310879790|gb|EFQ38384.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 187 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 1/92 (1%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 VD +G+R+R R + ++ G+T + + E+ + V S L +I++ L P+ Sbjct: 3 VDR-IGERLRRYRRAAKKTLHQVASESGLTASFLSQAERNLTGVSISSLANIAKSLNIPL 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + FD D E P + Sbjct: 62 NALFDQPAQPQPDSHEGERVRYTIEGQPLAYE 93 >gi|324327069|gb|ADY22329.1| ans operon repressor protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 125 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 4/122 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R S ++ + LGI YE G L I+++ ++ + + Sbjct: 3 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYILGR 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + + + L + ++ I VRS K Sbjct: 63 IEHSHPNKDVID---ITRLLNDPDPTLLIDGEALSTEEIID-FIAFVRSKRELSSKRIEN 118 Query: 137 EE 138 E Sbjct: 119 IE 120 >gi|313634912|gb|EFS01314.1| XRE family transcriptional regulator [Listeria seeligeri FSL N1-067] Length = 65 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q L L ++ Q + EKG I++ E + F + Sbjct: 3 NRVKALREEKGIAQNDLASILEVSRQTIHAIEKGKYNPSLELSLKIAKYFELTVEEIFQL 62 Query: 77 SPT 79 Sbjct: 63 EEE 65 >gi|304408349|ref|ZP_07389996.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] gi|304342638|gb|EFM08485.1| transcriptional regulator, XRE family [Paenibacillus curdlanolyticus YK9] Length = 452 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 46/112 (41%), Gaps = 4/112 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +RIR R+ M+Q +L + + + + + E R ++ L+ IS L + + Sbjct: 1 MKISERIRQLRVHKKMTQGELVDGIS-SVAYLSRIENNQIRPSSNFLKQISNKLGVELEY 59 Query: 73 FFDVSPTVCSDISSEENNVMDF---ISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + D ++ + D + LN + +++ D + +I Sbjct: 60 LVTLDSFKYRDKINDIVWRYRKTGELPEEDAMFLNMHSVELHDDDIHLRIYA 111 >gi|300856414|ref|YP_003781398.1| hypothetical protein CLJU_c32490 [Clostridium ljungdahlii DSM 13528] gi|300436529|gb|ADK16296.1| hypothetical protein CLJU_c32490 [Clostridium ljungdahlii DSM 13528] Length = 83 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 10 PVDINVG----KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 +D G K++ + R++ +QE + + +E G N + I++ Sbjct: 13 SIDTLTGLPWNKKLEVLRIVNNWTQEYAAQKCNTNQKVYWSWENGKNYPRKRSQESIAKA 72 Query: 66 LESPISFFF 74 + I F Sbjct: 73 FKVKIHDIF 81 >gi|300788627|ref|YP_003768918.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299798141|gb|ADJ48516.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 399 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 31/80 (38%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + VG R+R R ++ + GIT + + E+G + L +++VL Sbjct: 1 MNDDLARRVGDRVRFYRTAARQTKTVVAGLTGITPDYLYQIERGQKLPTIAVLAQLADVL 60 Query: 67 ESPISFFFDVSPTVCSDISS 86 D P V + Sbjct: 61 RVKPGDLLDGQPAVRPPRAR 80 >gi|297161126|gb|ADI10838.1| hypothetical protein SBI_07718 [Streptomyces bingchenggensis BCW-1] Length = 295 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 33/105 (31%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 +G + P +G+ +R R G+S + G +G+ + E G + +L+ Sbjct: 1 MGLRANPTQRQRRLGEELRKLREASGLSATEAGAHVGLGRAHMSHIETGRTAIPEEKLRA 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 +++V D + + L Sbjct: 61 LADVYGCTSHPLVDGLCEMSRATGRGWWSAYKETHDARAFDLTEL 105 >gi|294794616|ref|ZP_06759752.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] gi|294454946|gb|EFG23319.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 3_1_44] Length = 153 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 5/119 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K ++ R+ +G SQ ++ + +GI+ + YE G L +S + DV Sbjct: 5 KNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDELLDV 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + E + + + ++ D + R + EL EK Sbjct: 65 NGEQ-----HEPIYDLSPVLKNKYIAYKGEVFELKDSQKRALLRELDNLFTKFEKSKVE 118 >gi|262376108|ref|ZP_06069339.1| predicted protein [Acinetobacter lwoffii SH145] gi|262309202|gb|EEY90334.1| predicted protein [Acinetobacter lwoffii SH145] Length = 107 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 1/91 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R ++Q++L E GI + E G + + VL + Sbjct: 12 ARLKEIRKQRKLTQQELAEKSGIPSTSISHIEAGSRKPSLENFYKLVIVLNVSADYLL-G 70 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 SD+ ++ ++ + F Sbjct: 71 RTERSSDVGNDPIAKSIQELPELEREMIQKF 101 >gi|260463034|ref|ZP_05811237.1| putative phage repressor [Mesorhizobium opportunistum WSM2075] gi|259031155|gb|EEW32428.1| putative phage repressor [Mesorhizobium opportunistum WSM2075] Length = 234 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 25/99 (25%), Gaps = 5/99 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG IR R G+ + E V +E G N L + L Sbjct: 11 IKVGAAIRQARKQRGLVMRHIAEHNDTDVAAVGNWETGRNLPKTENLLKTAAFLRVDPVA 70 Query: 73 FFDV-----SPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + + + P ++L Sbjct: 71 LGQGQVVFLDDAGPVADAEIVTDAGPLPAGPMDIELLGA 109 >gi|260853764|ref|YP_003227655.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|293403667|ref|ZP_06647758.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298379279|ref|ZP_06989160.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|300903179|ref|ZP_07121111.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300929088|ref|ZP_07144582.1| peptidase S24-like domain protein [Escherichia coli MS 187-1] gi|301019699|ref|ZP_07183852.1| peptidase S24-like domain protein [Escherichia coli MS 196-1] gi|301301704|ref|ZP_07207839.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|257752413|dbj|BAI23915.1| putative phage repressor protein CI [Escherichia coli O26:H11 str. 11368] gi|291429520|gb|EFF02540.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298280392|gb|EFI21896.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|299882087|gb|EFI90298.1| peptidase S24-like domain protein [Escherichia coli MS 196-1] gi|300404794|gb|EFJ88332.1| peptidase S24-like domain protein [Escherichia coli MS 84-1] gi|300462961|gb|EFK26454.1| peptidase S24-like domain protein [Escherichia coli MS 187-1] gi|300843201|gb|EFK70961.1| peptidase S24-like domain protein [Escherichia coli MS 124-1] gi|315252878|gb|EFU32846.1| peptidase S24-like domain protein [Escherichia coli MS 85-1] gi|323965045|gb|EGB60506.1| peptidase S24 [Escherichia coli M863] Length = 229 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 1/70 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ G++Q+ LG+ +G++ +QK E G +++ I+ L + Sbjct: 7 ERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKAN-QTTKIVEIANALGVRAEWLSSG 65 Query: 77 SPTVCSDISS 86 + Sbjct: 66 VGNMSDSTVQ 75 >gi|239945915|ref|ZP_04697852.1| SARP family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291449371|ref|ZP_06588761.1| hypothetical protein SSGG_06589 [Streptomyces roseosporus NRRL 15998] gi|291352318|gb|EFE79222.1| hypothetical protein SSGG_06589 [Streptomyces roseosporus NRRL 15998] Length = 829 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFF 73 VG RIR R G+SQE GI+ + ++ E+G R A L+ ++ L Sbjct: 24 VGPRIRSFRRRAGLSQEAAASGAGISARALRDIERGRARRPRAHTLRRLAGTLGLSDDEL 83 Query: 74 FDVSPTVCSDISSEE 88 D+ + + Sbjct: 84 ADLLADARTGPPRDT 98 >gi|284035246|ref|YP_003385176.1| XRE family transcriptional regulator [Spirosoma linguale DSM 74] gi|283814539|gb|ADB36377.1| transcriptional regulator, XRE family [Spirosoma linguale DSM 74] Length = 66 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R +SQ L + + ++ Q + E G +++V + F + Sbjct: 3 NRLKVERAEHNLSQADLADRISVSRQTINSIETGRYVPSTILALKLAQVFGKAVEHIFTL 62 Query: 77 SPTV 80 T Sbjct: 63 EETD 66 >gi|229060102|ref|ZP_04197472.1| Transcriptional regulator,Cro/CI [Bacillus cereus AH603] gi|228719142|gb|EEL70752.1| Transcriptional regulator,Cro/CI [Bacillus cereus AH603] Length = 66 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R G +Q+ LGE +G + Q + E+ I++ P+ F+ Sbjct: 4 NRIVVCRAEKGWTQQDLGERVGASRQTIASMERNKYNPSLILAFKIAKAFGKPLEEVFEY 63 Query: 77 SPT 79 Sbjct: 64 KEE 66 >gi|269955195|ref|YP_003324984.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269303876|gb|ACZ29426.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 486 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 5/116 (4%) Query: 27 GMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDISS 86 G++ + LG +G T + E G S L+ ++E L + P + Sbjct: 22 GLTLDALGAAVGCTPSLLSLIENGKREPRLSLLRALAEALRVEVGDLLAAEPPD-RRAAL 80 Query: 87 E---ENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIEEE 139 E E + GL + ++ V ++++ L + E++ EE Sbjct: 81 EIDLERAQRGPLFGELGLPQVKPSQKLPMP-VLEQLVGLHAELARREEEAIATPEE 135 >gi|213019765|ref|ZP_03335569.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212994671|gb|EEB55315.1| putative transcriptional regulator [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 182 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 20/125 (16%), Positives = 47/125 (37%), Gaps = 12/125 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++R R+ + + L I + + +YE+G + +L+ I+E L PI Sbjct: 13 QIAQKVRNWRLKGKYTLKDLVGKANINYHTLLRYEQGTCGIPTEKLKVIAEALSIPIRNL 72 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKY 133 F + D +++ + + I+ + I L +S+ + E+ Sbjct: 73 FPRRKVLREDSCFDKSKTQEM------------YNFIERTGGSKTIYALTKSVRAEEESN 120 Query: 134 RTIEE 138 Sbjct: 121 IKAAR 125 >gi|210620995|ref|ZP_03292380.1| hypothetical protein CLOHIR_00323 [Clostridium hiranonis DSM 13275] gi|210154979|gb|EEA85985.1| hypothetical protein CLOHIR_00323 [Clostridium hiranonis DSM 13275] Length = 362 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 43/92 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+ + I+ +R L ++QE+L LG++ V K+E G + + L +++++L++ I+ Sbjct: 1 MNINQIIKEKRKALSLTQEQLANQLGVSTPAVSKWESGASYPDITILPNLAKILKTDINT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + + + + + + Sbjct: 61 LLSFQSDLSDEEINNRIKDLSSFALNHTIDEI 92 >gi|150398411|ref|YP_001328878.1| XRE family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150029926|gb|ABR62043.1| transcriptional regulator, XRE family [Sinorhizobium medicae WSM419] Length = 125 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 42/118 (35%), Gaps = 7/118 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 G+ +R R G++Q+++ +G++ + E G LQ ++ Sbjct: 5 GEAVRELRRRKGVTQKEMAAAIGVSPAYLSALEHGKRGAPSFDFLQRVAGYFNVIWD--- 61 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + S+ V+D P G F ++R E +R++ +K Sbjct: 62 EADELFRIAHISDPKVVLDTSGLPPGHT---AFANRLSGQIRSLSAETIRALEDVLEK 116 >gi|118478631|ref|YP_895782.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196042846|ref|ZP_03110085.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225865314|ref|YP_002750692.1| DNA-binding protein [Bacillus cereus 03BB102] gi|300118327|ref|ZP_07056074.1| DNA-binding protein [Bacillus cereus SJ1] gi|118417856|gb|ABK86275.1| transcriptional regulator [Bacillus thuringiensis str. Al Hakam] gi|196026330|gb|EDX64998.1| DNA-binding protein [Bacillus cereus 03BB108] gi|225788363|gb|ACO28580.1| DNA-binding protein [Bacillus cereus 03BB102] gi|298724296|gb|EFI64991.1| DNA-binding protein [Bacillus cereus SJ1] Length = 67 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L M+QE L + +G+ + + EKG I+ L S I F Sbjct: 6 KIKEYRAKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 78 PT 79 Sbjct: 66 DE 67 >gi|77920536|ref|YP_358351.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380] gi|77546619|gb|ABA90181.1| transcriptional regulator, XRE family [Pelobacter carbinolicus DSM 2380] Length = 197 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 29/67 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +IR R M+ + L E G++ + + E + L I++ L+ + Sbjct: 11 LQIGFKIRRLRQERRMTLQNLSEATGLSKPLLSQVENEQVIPPLATLLRIAKALKVGLHT 70 Query: 73 FFDVSPT 79 FF + Sbjct: 71 FFQEEGS 77 >gi|3818506|gb|AAC73053.1| putative repressor protein [Rhodococcus sp. X309] Length = 164 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 28/56 (50%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+R R+ G++ + L LG + Q V +E G + L+ I++ L+ IS Sbjct: 27 RLRELRVKAGLTPDDLSVRLGSSRQSVSHWETGRSTPAPPVLKQIAQELDVSISVL 82 >gi|292486897|ref|YP_003529767.1| putative transcriptional regulator [Erwinia amylovora CFBP1430] gi|292900708|ref|YP_003540077.1| DNA-binding protein [Erwinia amylovora ATCC 49946] gi|291200556|emb|CBJ47685.1| putative DNA-binding protein [Erwinia amylovora ATCC 49946] gi|291552314|emb|CBA19353.1| putative transcriptional regulator [Erwinia amylovora CFBP1430] gi|312170967|emb|CBX79226.1| putative transcriptional regulator [Erwinia amylovora ATCC BAA-2158] Length = 85 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R+ G+SQ+KLG GI + +YE+G++ + ++ VL+ P + Sbjct: 4 HRLKEARLKKGLSQQKLGVLAGIDEATASARMNQYERGIHVPDFELVCRLAAVLDVPSCY 63 Query: 73 FFDVSPTVCS 82 + + + + Sbjct: 64 LYTLEDDLAA 73 >gi|326204877|ref|ZP_08194730.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325984926|gb|EGD45769.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 108 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 37/74 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKRIR R +G+++E+ E L ++ V + E+G ++ + +IS+ L + + Sbjct: 4 KEIGKRIRDERESIGLTRERFAELLELSINFVGQIERGEKKMSLETITNISDCLHVSLDY 63 Query: 73 FFDVSPTVCSDISS 86 +P + + Sbjct: 64 LIKGTPDSKINTTK 77 >gi|229591188|ref|YP_002873307.1| putative DNA binding protein [Pseudomonas fluorescens SBW25] gi|229363054|emb|CAY50029.1| putative DNA binding protein [Pseudomonas fluorescens SBW25] Length = 208 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 49/136 (36%), Gaps = 4/136 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + V ++ R +S + L G++ + + E G + L I++ L+ + Sbjct: 24 ISLCVAHNLQRLRSKRHLSLDGLARVCGVSRAMLAQIESGRSVPSIKVLCKIAKGLKVSV 83 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + F + + + + DG ++R D + + +R++ Sbjct: 84 AAFLE--DRAFEGVEVLPARQSKRLVSADGGFISRALFPYDTARQSEFYEIRLRALGEEI 141 Query: 131 KKYRTI--EEECMVEQ 144 + +E +V Q Sbjct: 142 SEGHGPGIQENLVVAQ 157 >gi|229030878|ref|ZP_04186898.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1271] gi|228730438|gb|EEL81398.1| transcriptional regulator/TPR domain protein [Bacillus cereus AH1271] Length = 422 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 8/115 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+RIR R+ +Q +L + + + + E G + S L+ +++ +E +F Sbjct: 1 MNIGERIRQIRIHKEFTQGELVSEI-CSITYLSRIENGQIKPSVSFLEKVAKKMEVDYNF 59 Query: 73 FFDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 D + D I + L +++ I+ L+++ Sbjct: 60 LVDEDYGDIEPMLLGICNKYKNDKIISEKDLSSLELYVR-----DIDSILLLLKA 109 >gi|220930162|ref|YP_002507071.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220000490|gb|ACL77091.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 108 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 36/74 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GKRIR R G+++E+ E L ++ V + E+G ++ L +IS+ L + + Sbjct: 4 KEIGKRIRDERESFGLTRERFAEMLELSTNFVGQIERGEKKMSLETLINISDCLHISLDY 63 Query: 73 FFDVSPTVCSDISS 86 +P + + Sbjct: 64 LIKGTPENNINTNK 77 >gi|170016379|ref|YP_001727298.1| ABC transporter ATPase [Leuconostoc citreum KM20] gi|169803236|gb|ACA81854.1| ATPase component of ABC transporters with duplicated ATPase domains [Leuconostoc citreum KM20] Length = 299 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 27/66 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ + R +SQE L + L ++ Q V K+E G +L +S++ + F Sbjct: 7 SQLSVLRQRKRISQEVLAQKLFVSRQSVSKWENGDAEPDIDKLISLSDIFAVDLDFLLAG 66 Query: 77 SPTVCS 82 Sbjct: 67 KQRTDD 72 >gi|162447443|ref|YP_001620575.1| putative XRE family transcription regulator [Acholeplasma laidlawii PG-8A] gi|161985550|gb|ABX81199.1| putative transcription regulator, XRE family [Acholeplasma laidlawii PG-8A] Length = 199 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 13/102 (12%), Positives = 35/102 (34%), Gaps = 1/102 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 ++ + + ++ R+ +S ++ + +G + Q YE G + L +S + Sbjct: 13 NLFISENLKRLRLANNLSTVQVAQIIGKSRQGYVNYESGAREISIHDLITLSGFYNVRVD 72 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 +P + + + I + I+D Sbjct: 73 DII-GNPYSNRNEKALTFRTFEHIDDKIVPSMQLTISTINDD 113 >gi|153955561|ref|YP_001396326.1| transcriptional regulator [Clostridium kluyveri DSM 555] gi|219855954|ref|YP_002473076.1| hypothetical protein CKR_2611 [Clostridium kluyveri NBRC 12016] gi|146348419|gb|EDK34955.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555] gi|219569678|dbj|BAH07662.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 130 Score = 41.7 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 44/124 (35%), Gaps = 1/124 (0%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF-FF 74 G +++ R+ G+SQ++L LG+T Q + YE+ S ++ I ++L FF Sbjct: 3 GLNLKIERIKKGLSQKQLASMLGVTNQTISDYERCKISPSLSNMEKICKILNINPRKLFF 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + + + L + K + + +V K Sbjct: 63 NNDEKEGDKVLEIIIPEDNKKLDRQIKALEYAIQHNTNEKDKCIHKKAYDRLVEERKNRL 122 Query: 135 TIEE 138 E+ Sbjct: 123 AKED 126 >gi|331086036|ref|ZP_08335119.1| hypothetical protein HMPREF0987_01422 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406959|gb|EGG86464.1| hypothetical protein HMPREF0987_01422 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 72 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I +R MSQ +L E L IT + + K+E+G++ + L +SE+L + Sbjct: 7 GCFIARKRKERNMSQRELAEYLHITDKAISKWERGLSFPDITILIPLSEILGVSLYDLLT 66 Query: 76 V 76 Sbjct: 67 G 67 >gi|326942288|gb|AEA18184.1| transcriptional regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 190 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 1 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVI 60 Query: 60 QHISEVLESPISFFF 74 I++ L P+S Sbjct: 61 WKITKGLSIPLSRLM 75 >gi|319894058|gb|ADV76309.1| hypothetical protein [Streptococcus sp. F.MI.5] Length = 117 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 31/94 (32%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I+ R+ G+++E++G + I + + E L + +L + FF Sbjct: 14 GLAIKEARLKRGLTREQVGALIEIDSRYLTNIENKGQHPSIQVLYDLVSLLHVSVDEFFL 73 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + + T L L Sbjct: 74 PANNLVKSTRRLQIEKYMDSFTDKELSLMESLAS 107 >gi|302531749|ref|ZP_07284091.1| predicted protein [Streptomyces sp. AA4] gi|302440644|gb|EFL12460.1| predicted protein [Streptomyces sp. AA4] Length = 403 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 26/55 (47%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R G++QE L L + + V+ +E G N+ A R I+E L ++ Sbjct: 27 LARARTEAGLTQEDLARLLRMDVKSVRNWESGRNKPQAKRRHEIAEHLSVSLADL 81 >gi|291527875|emb|CBK93461.1| Predicted transcriptional regulators [Eubacterium rectale M104/1] Length = 205 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFF 73 +G+R + RR L ++Q + + +G+T +Q+YE G + +SE L + + Sbjct: 10 IGERAKSRRTELNLTQPYVADKMGVTASTIQRYEAGTIDNTKKMVLEGLSEALHVSVEWL 69 Query: 74 FDVSPTVCSDISSEEN 89 + + +DI+ ++ Sbjct: 70 KGETDSYETDITDKKE 85 >gi|237741587|ref|ZP_04572068.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|237744995|ref|ZP_04575476.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|256026806|ref|ZP_05440640.1| MerR family transcriptional regulator [Fusobacterium sp. D11] gi|260494772|ref|ZP_05814902.1| transcriptional regulator [Fusobacterium sp. 3_1_33] gi|289764802|ref|ZP_06524180.1| transcriptional regulator [Fusobacterium sp. D11] gi|294785805|ref|ZP_06751093.1| DNA-binding protein [Fusobacterium sp. 3_1_27] gi|229429235|gb|EEO39447.1| transcriptional regulator [Fusobacterium sp. 4_1_13] gi|229432224|gb|EEO42436.1| transcriptional regulator [Fusobacterium sp. 7_1] gi|260197934|gb|EEW95451.1| transcriptional regulator [Fusobacterium sp. 3_1_33] gi|289716357|gb|EFD80369.1| transcriptional regulator [Fusobacterium sp. D11] gi|294487519|gb|EFG34881.1| DNA-binding protein [Fusobacterium sp. 3_1_27] Length = 185 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 38/87 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 INVG I+ R + + + GI+ + + EKG + ++ I++VLE P+ Sbjct: 5 INVGITIKNIRKAKKLLLKDVALKCGISSSMLSQIEKGNANPSLNTIKSIAQVLEVPLFK 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPD 99 FF S + + + IST Sbjct: 65 FFIDSEKENYEFHLLKKDDRKIISTEY 91 >gi|228941681|ref|ZP_04104228.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974608|ref|ZP_04135174.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981203|ref|ZP_04141503.1| Transcriptional regulator, Xre [Bacillus thuringiensis Bt407] gi|228778403|gb|EEM26670.1| Transcriptional regulator, Xre [Bacillus thuringiensis Bt407] gi|228785011|gb|EEM33024.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817893|gb|EEM63971.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 194 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 5 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVI 64 Query: 60 QHISEVLESPISFFF 74 I++ L P+S Sbjct: 65 WKITKGLSIPLSRLM 79 >gi|255533832|ref|YP_003094204.1| helix-turn-helix domain-containing protein [Pedobacter heparinus DSM 2366] gi|255346816|gb|ACU06142.1| helix-turn-helix domain protein [Pedobacter heparinus DSM 2366] Length = 113 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 9/117 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + K I+ R G SQ ++ E L I+ K E G+ + RL I+ +LE+ I Sbjct: 4 ISKNIKRFRQKKGWSQREVAEQLNISIPAFSKIENGITDINLKRLGQIATLLEASIMDLM 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 S N++ ++ +++++IEL + K Sbjct: 64 ATDGENPQSKHSMHVNMLKIKLAKKEEEVI---------DLQRRVIELYEEVKKKNK 111 >gi|188989936|ref|YP_001901946.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. B100] gi|167731696|emb|CAP49874.1| transcriptional regulator [Xanthomonas campestris pv. campestris] Length = 150 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 9/124 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFFFD 75 +R+R R + ++QE L LG+T V ++E L +++ + Sbjct: 31 ERVREARSLTKLTQEALAGELGVTRSAVAQWEMAEGTAPSVDNLIGLAKRSGMTFEYLAT 90 Query: 76 VSPT----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 +EE + + L F + + R +++L+ + + Sbjct: 91 GRGERVFGPPVSSIAEEPAQYRHLDEQQRV-LLSRFDALA-PRQRTGLLDLL--LAEGKP 146 Query: 132 KYRT 135 + R Sbjct: 147 RRRR 150 >gi|254828625|ref|ZP_05233312.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] gi|258601024|gb|EEW14349.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165] Length = 131 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 6/85 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEV 65 +PN + R+ L R G S+ + LG+ +E G+ + I+ + Sbjct: 1 MPN-----LSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATL 55 Query: 66 LESPISFFFDVSPTVCSDISSEENN 90 + + + S +N Sbjct: 56 YDVSVDYLLGQQSIPTYAPSELQNE 80 >gi|160932466|ref|ZP_02079856.1| hypothetical protein CLOLEP_01304 [Clostridium leptum DSM 753] gi|156868425|gb|EDO61797.1| hypothetical protein CLOLEP_01304 [Clostridium leptum DSM 753] Length = 114 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG R + R G++QE L E +G++ + E+GVN +L I + + Sbjct: 8 KAVGSRFKQYREQSGLTQETLAEKVGLSPNYISAIERGVNFPSLEKLILIINEIGATADQ 67 Query: 73 FFDV 76 F Sbjct: 68 IFTD 71 >gi|153816388|ref|ZP_01969056.1| hypothetical protein RUMTOR_02640 [Ruminococcus torques ATCC 27756] gi|317500743|ref|ZP_07958960.1| hypothetical protein HMPREF1026_00903 [Lachnospiraceae bacterium 8_1_57FAA] gi|331089779|ref|ZP_08338673.1| hypothetical protein HMPREF1025_02256 [Lachnospiraceae bacterium 3_1_46FAA] gi|145846276|gb|EDK23194.1| hypothetical protein RUMTOR_02640 [Ruminococcus torques ATCC 27756] gi|316897836|gb|EFV19890.1| hypothetical protein HMPREF1026_00903 [Lachnospiraceae bacterium 8_1_57FAA] gi|330403662|gb|EGG83217.1| hypothetical protein HMPREF1025_02256 [Lachnospiraceae bacterium 3_1_46FAA] Length = 245 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 2/117 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +IR RR L MS+ +L E + +T + YE G++ + LE ++F Sbjct: 3 MIRNKIRKRRQELNMSRVQLAEAVQVTPSAIANYENGISYPKPDIFVALMITLEVDANYF 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 ++ + + + L+ R VR I E + E Sbjct: 63 YEEYVRNREIAIACKRAITQDEI--YALEKYRQLTSSGKKLVRMVIEEEYSRMQQEE 117 >gi|146311635|ref|YP_001176709.1| XRE family transcriptional regulator [Enterobacter sp. 638] gi|145318511|gb|ABP60658.1| transcriptional regulator, XRE family [Enterobacter sp. 638] Length = 175 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 30/81 (37%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++ ++ R G S KL + G++ + + E+ + S L I+ L P Sbjct: 3 ITQHLATTLKTERQARGWSLSKLADETGVSKAMLGQIERNESSPTVSTLWKIATGLNVPF 62 Query: 71 SFFFDVSPTVCSDISSEENNV 91 S F ++ + Sbjct: 63 SAFISPEEQPQPVFDPQQQAM 83 >gi|114770339|ref|ZP_01447877.1| hypothetical protein OM2255_11900 [alpha proteobacterium HTCC2255] gi|114549176|gb|EAU52059.1| hypothetical protein OM2255_11900 [alpha proteobacterium HTCC2255] Length = 468 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 13/88 (14%), Positives = 31/88 (35%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ R +G+SQ + L I+ + E+ + + +S+ Sbjct: 9 GPRVKKIRNSIGLSQSAMANELDISPSYLNLIERNQRPITVQLILKLSKTYNISPEELEG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQL 103 S + + ++ + P +L Sbjct: 69 DSDGTVTALKEIFSDSLLQGELPGYEEL 96 >gi|325926434|ref|ZP_08187757.1| putative transcription factor, MBF1 like protein [Xanthomonas perforans 91-118] gi|325543177|gb|EGD14617.1| putative transcription factor, MBF1 like protein [Xanthomonas perforans 91-118] Length = 134 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 8/77 (10%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQ-----QVQKYEKGVNRVGA 56 + K P V G R+R RM +G +Q +L E +G+ +V +YE G + Sbjct: 21 MPKPKTPATVY---GTRLRHARMAMGWTQAELAERIGMVDNVSGATRVSRYETGQHDPDP 77 Query: 57 SRLQHISEVLESPISFF 73 + + +++ L+ P+++F Sbjct: 78 ATAEALAKALKLPVAYF 94 >gi|332652457|ref|ZP_08418202.1| putative repressor protein [Ruminococcaceae bacterium D16] gi|332517603|gb|EGJ47206.1| putative repressor protein [Ruminococcaceae bacterium D16] Length = 77 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 26/56 (46%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RI+ R LG++Q++L + + ++ + + EK +++V + + Sbjct: 4 RIKELRTQLGLTQQQLADLVHVSNRTIISIEKEQYSPSLMLAYRLAQVFHTTVEEL 59 >gi|254498607|ref|ZP_05111326.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254352147|gb|EET10963.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 212 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + VG+R++ RM LG S+ + + G + +Q +E G V + + L Sbjct: 1 MNREIYKIVGERLKSVRMQLGFSRREFADKCGFSAATLQAWEDGRYPVPKKSMVKYVQTL 60 Query: 67 E-----SPISFFFDVSPTVCSDISS 86 + +F + I+ Sbjct: 61 FDCGLATSPEWFLNGEGLPPRPINK 85 >gi|238018698|ref|ZP_04599124.1| hypothetical protein VEIDISOL_00542 [Veillonella dispar ATCC 17748] gi|313893193|ref|ZP_07826770.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon 158 str. F0412] gi|237865169|gb|EEP66459.1| hypothetical protein VEIDISOL_00542 [Veillonella dispar ATCC 17748] gi|313442546|gb|EFR60961.1| DNA-binding helix-turn-helix protein [Veillonella sp. oral taxon 158 str. F0412] Length = 153 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 5/119 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K ++ R+ +G SQ ++ + +GI+ + YE G L +S + DV Sbjct: 5 KNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDELLDV 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + E + + + ++ D + R + EL EK Sbjct: 65 NGEQ-----HEPIYDLSPVLKNKYIAYKGEVFELKDSQKRALLRELDNLFTKFEKSKVE 118 >gi|289582562|ref|YP_003481028.1| XRE family transcriptional regulator [Natrialba magadii ATCC 43099] gi|289532115|gb|ADD06466.1| transcriptional regulator, XRE family [Natrialba magadii ATCC 43099] Length = 79 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 27/75 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ RR G+SQ L E + +T Q + E+ ++ E I F+ Sbjct: 3 NQLTERREEAGLSQGDLAEAVDVTRQTINAIERERYDPSLELAFKLAAFFECHIEELFEP 62 Query: 77 SPTVCSDISSEENNV 91 + SE + Sbjct: 63 DFELDLTPVSELESN 77 >gi|163789431|ref|ZP_02183870.1| transcription regulator [Carnobacterium sp. AT7] gi|159875285|gb|EDP69350.1| transcription regulator [Carnobacterium sp. AT7] Length = 68 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R I +SQE+L + ++ Q + E +I+ VL + I F Sbjct: 5 IKELRKIAQLSQEELAKICKVSRQTINAIENDKYDPTLQLAFNIASVLGTTIDNLF 60 >gi|42518112|ref|NP_964042.1| hypothetical protein LJ0027 [Lactobacillus johnsonii NCC 533] gi|41582396|gb|AAS08008.1| hypothetical protein LJ_0027 [Lactobacillus johnsonii NCC 533] Length = 269 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 15/99 (15%), Positives = 41/99 (41%), Gaps = 1/99 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ + R LG++Q ++ + ++ K E+ ++ +G + L I + ++ Sbjct: 1 MTIGEALLNLRKQLGLTQTEMAANV-VSTSFYSKVERNIHDIGTNDLLQILNKHQINATY 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 FF+ + + + +L + +ID Sbjct: 60 FFENLNERENISEDIMDRISVAFEQKSKDKLLKIKQEID 98 >gi|32475015|ref|NP_868009.1| transcriptional regulator [Rhodopirellula baltica SH 1] gi|32445555|emb|CAD75556.1| conserved hypothetical protein-putative transcriptional regulator [Rhodopirellula baltica SH 1] Length = 121 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 47/117 (40%), Gaps = 18/117 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV----NRVGASRLQHISEVLES 68 + +GKR+R R G++ +L + + + F + K E + L+ +++ L++ Sbjct: 1 MQLGKRLRQLRNAQGLTLRELADRVSVGFTYLCKIETNKLEHGHSPSNRLLESLAQELDA 60 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELV 123 ++ V ++ + + + FI + D + ++++L Sbjct: 61 SAEELILLADRVPPSLADKVHAHPE------------AFIALAQLDDQQLNRVLQLA 105 >gi|330470351|ref|YP_004408094.1| helix-turn-helix domain-containing protein [Verrucosispora maris AB-18-032] gi|328813322|gb|AEB47494.1| helix-turn-helix domain protein [Verrucosispora maris AB-18-032] Length = 226 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 11/115 (9%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +K +P+ VG IR R +S +L E G++ + + E+G+ R A LQ Sbjct: 1 MATSKDLPD-----VGGFIRDLRRNAKISLRQLAEQAGVSNPYLSQIERGLRRPSAEVLQ 55 Query: 61 HISEVLESPI------SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 ++ L + D + + + Q+ F + Sbjct: 56 QLASALRVSTPAMYLRAGLLDDKEGQGVLAAIAVDPDLTMAQKQSLTQIYETFRR 110 >gi|315168447|gb|EFU12464.1| helix-turn-helix protein [Enterococcus faecalis TX1341] Length = 112 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 2/111 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQ 60 + KK VGKRI+ R + E+ G + T V ++KG L+ Sbjct: 1 MKEKKYEFYNSKTVGKRIKEIRNSFNCTMEQFGRLIGNATKAAVYNWKKGKRLPTNDSLE 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 I+ + + + + + + + L L R + + Sbjct: 61 LIAILGRTSVEWVVYGDLDEYISSIT-HSQFKTLRRYKEILYLRRAYRNLP 110 >gi|300949501|ref|ZP_07163497.1| peptidase S24-like domain protein [Escherichia coli MS 116-1] gi|300451077|gb|EFK14697.1| peptidase S24-like domain protein [Escherichia coli MS 116-1] Length = 231 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 32/79 (40%), Gaps = 1/79 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPIS 71 + +G RIR R+ + +L E +G+ + + E G + + + +++ L + Sbjct: 1 MKIGSRIRQLRLAKNIKIAELAEAVGVDAANISRLETGKQKQFSEQTLNRLAQALSVSVP 60 Query: 72 FFFDVSPTVCSDISSEENN 90 F + + E + Sbjct: 61 DLFTSDENDTTVHINSEKH 79 >gi|300115054|ref|YP_003761629.1| XRE family transcriptional regulator [Nitrosococcus watsonii C-113] gi|299540991|gb|ADJ29308.1| transcriptional regulator, XRE family [Nitrosococcus watsonii C-113] Length = 84 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K +D++VG+ +R+ R + MSQ +L + GI + E +G R + Sbjct: 1 MKNYKIAKRQIDVSVGESVRIIRELQEMSQNELAKLAGIPQSTISAIENDRVNLGVERAK 60 Query: 61 HISEVLESPISFF 73 ++ L+ + Sbjct: 61 QLALALKCHPAVL 73 >gi|260881166|ref|ZP_05893333.1| transcriptional regulator, Cro/CI family [Mitsuokella multacida DSM 20544] gi|260849682|gb|EEX69689.1| transcriptional regulator, Cro/CI family [Mitsuokella multacida DSM 20544] Length = 84 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 KR++ R+ +SQ + + L + YE G R+ L +++ + + Sbjct: 21 KRMKDLRVANNLSQTDVAKVLHCSQVAYGMYELGKRRISVENLVKLAKYYHVSMDYL 77 >gi|168207229|ref|ZP_02633234.1| helix-turn-helix domain protein [Clostridium perfringens E str. JGS1987] gi|170661408|gb|EDT14091.1| helix-turn-helix domain protein [Clostridium perfringens E str. JGS1987] Length = 85 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 8/59 (13%), Positives = 24/59 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +I+ R+ G++ + + + ++E G L+ + + ++F Sbjct: 27 IGDKIKRFRISTGLNYNDFAKKARVGTMTIYRWETGERNPSEDYLKQLIKNFNLDENYF 85 >gi|134093774|ref|YP_001098849.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] gi|133737677|emb|CAL60722.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 78 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 1 MVGNKKIPNPVDINV--GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 M + K + V + G R+R R LG+SQE L E G+ + + E+G + Sbjct: 1 MTKDSKHSDDVSLRQKYGSRLRFAREALGISQEALAEKAGLHRTYIGQVERGERNISIDN 60 Query: 59 LQHISEVLESPISFFF 74 L+ +++ + + Sbjct: 61 LERLADAVGEQLWEML 76 >gi|123443686|ref|YP_001007657.1| putative DNA-binding protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090647|emb|CAL13518.1| putative DNA-binding protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 118 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 5/110 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R +SQEKLG GI +V +YEKG + ++ + +L P + Sbjct: 4 ERLKSARKTAKLSQEKLGVLAGIDEATARSRVSQYEKGFHTPSFDLIKKFAVILNVPECY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 F+ V + + + + ++ ++++ I +L Sbjct: 64 FYIVDDVFAEAVLEMYHTHQMPYLQHPDYEKLKQAEKLV-EQLQKLIHDL 112 >gi|71065694|ref|YP_264421.1| DNA-binding protein [Psychrobacter arcticus 273-4] gi|71038679|gb|AAZ18987.1| probable DNA binding protein, helix turn helix motif [Psychrobacter arcticus 273-4] Length = 101 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEV 65 P+ + +G+R++ +R+ L ++Q L E GI V + E G + ++ Sbjct: 9 TPSEIAKILGERLKTQRLALNLTQAALAEKAGIGVSTVARIESGQGGTLDNIIRLAMALG 68 Query: 66 LESPISFFFDVSPTVCSDISSEEN 89 + + FD+ PT D+ +++N Sbjct: 69 MVHHFAELFDMVPTNIEDVIAKKN 92 >gi|118579884|ref|YP_901134.1| molybdate metabolism transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118502594|gb|ABK99076.1| transcriptional regulator of molybdate metabolism, XRE family [Pelobacter propionicus DSM 2379] Length = 368 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R G SQ++L E G++ V E G +++V P+ F Sbjct: 30 IKKFREERGWSQQELAERAGLSRAGVSAIETGKLVPSTVAALALAKVFACPVEELF 85 >gi|332358032|gb|EGJ35865.1| XRE family transcriptional regulator [Streptococcus sanguinis SK1056] Length = 62 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|325279953|ref|YP_004252495.1| helix-turn-helix domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324311762|gb|ADY32315.1| helix-turn-helix domain protein [Odoribacter splanchnicus DSM 20712] Length = 74 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++++ R ++ ++L + I + KYE G + + L +S+ L +S F+ Sbjct: 12 GQKLQQLRKNQSLTLQELEAIVDIDNSNLSKYESGSIDIRLTSLYKLSKALGITLSKLFE 71 Query: 76 VSP 78 Sbjct: 72 GIE 74 >gi|312865635|ref|ZP_07725859.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] gi|311098756|gb|EFQ56976.1| DNA-binding helix-turn-helix protein [Streptococcus downei F0415] Length = 139 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + RI+ R+ G S+E++ L + + +YE G + +L +++ I + Sbjct: 4 LADRIKEMRVDSGKSKEQVATYLAVELKTYSRYETGERKPDIEKLVQLADYFYCSIDYLL 63 Query: 75 DVS 77 Sbjct: 64 GRD 66 >gi|307706761|ref|ZP_07643566.1| helix-turn-helix family protein [Streptococcus mitis SK321] gi|307617846|gb|EFN97008.1| helix-turn-helix family protein [Streptococcus mitis SK321] Length = 62 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ RR L MSQ +L E + Q+ + E G GA L +S+ L+ I FF Sbjct: 8 RLKNRRKELKMSQRELAEGI-CKQGQISRLENGEFTPGADFLYALSKKLKVSIDFF 62 >gi|292657070|ref|YP_003536967.1| transcriptional regulator [Haloferax volcanii DS2] gi|291370611|gb|ADE02838.1| transcriptional regulator [Haloferax volcanii DS2] Length = 70 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +R RR +SQ +L E +G+T Q + E+ ++ + + FD Sbjct: 5 LRTRREAADLSQGELAEAVGVTRQTINAIERERYDPSLELAFKLAAYFDCRVEDLFDPE 63 >gi|228952478|ref|ZP_04114559.1| HTH-type transcriptional regulator PuuR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807215|gb|EEM53753.1| HTH-type transcriptional regulator PuuR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 68 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GK++ L R G SQ +L + L + V E G + S+L +SEV + P+ F Sbjct: 6 GKKLSLLRKNKGFSQRELAQLLNCSHSLVNLMENGKIQPTTSKLLGMSEVFKIPMDDLF 64 >gi|228996851|ref|ZP_04156485.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17] gi|228762912|gb|EEM11825.1| Transcriptional regulator, Xre [Bacillus mycoides Rock3-17] Length = 404 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+++ LE SF Sbjct: 4 LGEKIKALRKEKRLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLL 62 Query: 75 DVSPTVCSDISS 86 + + + Sbjct: 63 EEDNEEVAKLLP 74 >gi|229100209|ref|ZP_04231109.1| transcriptional regulator [Bacillus cereus Rock3-29] gi|228683251|gb|EEL37229.1| transcriptional regulator [Bacillus cereus Rock3-29] Length = 116 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 46/116 (39%), Gaps = 11/116 (9%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G R++ R L MSQ+ + + ++ V E G + + IS + Sbjct: 2 IENIIGIRVKEIRNSLAMSQQSFADAIEVSKGMVSLIESGKKKPSRDTVSKISNLGNISA 61 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVR 124 + +S D S S+ +L+ +I+ D ++ I+ +++ Sbjct: 62 DYVMGLSNYKNLDESQ---------SSEVKTELHDMISKIEKLDADKQKLILNMIK 108 >gi|194292356|ref|YP_002008263.1| anaerobic benzoate catabolism transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193226260|emb|CAQ72209.1| putative transcriptional regulator, ATP-binding kinase, Helix-turn-helix motif, Shikimate kinase motif [Cupriavidus taiwanensis LMG 19424] Length = 320 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 38/82 (46%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 N NP +++G+R+R +R G++++ + G++ + + E G LQH Sbjct: 25 AANGAQKNPFLVSLGERVRQQRACRGLTRKAAAQAAGVSERHLANLEYGSGNASILVLQH 84 Query: 62 ISEVLESPISFFFDVSPTVCSD 83 ++E L+ ++ T + Sbjct: 85 VAEALQCSLAGLLGDVTTSSPE 106 >gi|261405075|ref|YP_003241316.1| XRE family transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329929544|ref|ZP_08283268.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] gi|261281538|gb|ACX63509.1| transcriptional regulator, XRE family [Paenibacillus sp. Y412MC10] gi|328936269|gb|EGG32718.1| DNA-binding helix-turn-helix protein [Paenibacillus sp. HGF5] Length = 65 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++++ R+ +SQE+L + +G++ Q + E G S I + L ++ F Sbjct: 5 KLKMARVEKDLSQEELAQIVGVSRQTIGLIELGKYNPSLSLCVAICKALSRTLNDLFWEE 64 Query: 78 P 78 Sbjct: 65 D 65 >gi|217979264|ref|YP_002363411.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] gi|217504640|gb|ACK52049.1| transcriptional regulator, XRE family [Methylocella silvestris BL2] Length = 206 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 43/141 (30%), Gaps = 12/141 (8%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P +++ +R+RL G S E L G+ ++ G + + I+ L Sbjct: 17 PTDFGLSISERLRLLMQRKGRSIEALAAASGLARNKLDAVAAGEAAPTINLVWKIANALG 76 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS-- 125 P + + + + F + R + ++++E Sbjct: 77 VPFGSLVAARKRGGNIVLRKATEKVYFSNDG------RLTSRPLLPHDCKRLVEFYEMTI 130 Query: 126 ----IVSSEKKYRTIEEECMV 142 + SE E +V Sbjct: 131 APDYVARSEAHGAGTLESLVV 151 >gi|196032547|ref|ZP_03099961.1| transcriptional regulator AnsR [Bacillus cereus W] gi|228946720|ref|ZP_04109027.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195995298|gb|EDX59252.1| transcriptional regulator AnsR [Bacillus cereus W] gi|228812937|gb|EEM59251.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 125 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 4/122 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R S ++ + LGI YE G L I+++ ++ + + Sbjct: 3 ERLSELRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYILGR 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + + + L + ++ I VRS K Sbjct: 63 IEHSHQNKDVID---ITRLLNDPDSTLLIDGEALSTEEIID-FIAFVRSKRELSSKRIEN 118 Query: 137 EE 138 E Sbjct: 119 IE 120 >gi|116873523|ref|YP_850304.1| DNA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742401|emb|CAK21525.1| DNA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 426 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 1/73 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R GM+ + + + ++ + E GV L H++ LE P Sbjct: 4 IGLRIRNLRKQKGMTLKDVSHGI-VSIPYLANIENGVKTASIETLMHLARRLEVPEETLL 62 Query: 75 DVSPTVCSDISSE 87 I E Sbjct: 63 VNEEETNQVILEE 75 >gi|83950311|ref|ZP_00959044.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] gi|83838210|gb|EAP77506.1| DNA-binding protein, putative [Roseovarius nubinhibens ISM] Length = 190 Score = 41.7 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 33/72 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++ L + LG + + + E+ ++ S L+ +++VL PIS F Sbjct: 12 LGADLRALRKARGVTLAALADALGRSVGWLSQVERDLSEPSISDLRKMADVLGVPISMLF 71 Query: 75 DVSPTVCSDISS 86 + + Sbjct: 72 GQAMAPAEEAGH 83 >gi|325569547|ref|ZP_08145594.1| hypothetical protein HMPREF9087_1883 [Enterococcus casseliflavus ATCC 12755] gi|325157103|gb|EGC69268.1| hypothetical protein HMPREF9087_1883 [Enterococcus casseliflavus ATCC 12755] Length = 294 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 56/124 (45%), Gaps = 13/124 (10%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+ IR R+ G +Q+++ + I+ ++EKG +++ A+ L I E L I F Sbjct: 3 GETIRQIRLKKGFTQKEVYGTI-ISKSYAIEFEKGKHQIAANLLLQILENLSMDIDEFLY 61 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL--------QLNRYFIQIDD---VKVRQKIIELVR 124 ++ D + N+ + S L +L + ++++ +VR +I +++ Sbjct: 62 IANGYRLDEQNSYNHRYNQYSNKHDLPNLQKLLQELQKTTSRLNNIRIAEVRSRI-RMLQ 120 Query: 125 SIVS 128 + Sbjct: 121 CLAE 124 >gi|320536869|ref|ZP_08036863.1| hypothetical protein HMPREF9554_01598 [Treponema phagedenis F0421] gi|320146285|gb|EFW37907.1| hypothetical protein HMPREF9554_01598 [Treponema phagedenis F0421] Length = 94 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 10/72 (13%), Positives = 24/72 (33%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ +Q L G + ++ + A ++ I++ L + + +P Sbjct: 10 IKSLIKQRRTTQRGLSTTCGFAPRAIETWIAANQLPDAFQVYTIAKTLGVSVEYLVTGAP 69 Query: 79 TVCSDISSEENN 90 T + N Sbjct: 70 TDNTQELQNIKN 81 >gi|294632875|ref|ZP_06711434.1| DNA-binding protein [Streptomyces sp. e14] gi|292830656|gb|EFF89006.1| DNA-binding protein [Streptomyces sp. e14] Length = 190 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 36/83 (43%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P+P + VG IR R LG+ +L G++ + + E+G+ + + I++ L Sbjct: 6 PSPEALAVGSVIRGHRRRLGVPMAELAARSGLSQPFLSQLERGLTTPSLASIYKIADALS 65 Query: 68 SPISFFFDVSPTVCSDISSEENN 90 P F S T + E+ Sbjct: 66 LPPGIFLRPSSTSDTVAHEEDPQ 88 >gi|283768743|ref|ZP_06341654.1| DNA-binding protein [Bulleidia extructa W1219] gi|283104529|gb|EFC05902.1| DNA-binding protein [Bulleidia extructa W1219] Length = 71 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 32/67 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R +L ++Q+++G G++ Q + E+G + I+ + + + F + Sbjct: 5 NRLKIFRAMLNINQQEMGRLCGVSRQTISLIERGDYSPSVTLALTIARICDVTVEEIFYL 64 Query: 77 SPTVCSD 83 ++ Sbjct: 65 QEEEENE 71 >gi|260777358|ref|ZP_05886252.1| hypothetical protein VIC_002752 [Vibrio coralliilyticus ATCC BAA-450] gi|260607024|gb|EEX33298.1| hypothetical protein VIC_002752 [Vibrio coralliilyticus ATCC BAA-450] Length = 270 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 45/124 (36%), Gaps = 19/124 (15%) Query: 17 KRIRLRRMILGMSQEKLGECLG--------ITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +R++ R +SQE+L + L + + ++E+G R ++ + Sbjct: 8 ERLKQLREERQLSQEELADLLSSSHRAFSGVNQVMISQWERGKTTPSFVRRVGLASFFQV 67 Query: 69 PISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNR----YFIQIDDVKVRQKIIELVR 124 + F V +++ N ++ + F + + + + L+R Sbjct: 68 --EYDFSVEEMSQVKSATKLMNRPFNSDVAYDYEITQVDTYNFSSLPEKE-----LALIR 120 Query: 125 SIVS 128 S+ + Sbjct: 121 SMHA 124 >gi|253755143|ref|YP_003028283.1| DNA-binding protein [Streptococcus suis BM407] gi|251817607|emb|CAZ55354.1| putative DNA-binding protein [Streptococcus suis BM407] Length = 76 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RIR R ++Q+ + L + K E+G + A L +S++ + + Sbjct: 3 QRIRDLREDHDLTQKFVANLLSFSHTNYAKIERGEIALTADVLVQLSKLYNVSTDYLLGL 62 Query: 77 SP 78 + Sbjct: 63 TD 64 >gi|229169229|ref|ZP_04296943.1| Transcriptional regulator, Xre [Bacillus cereus AH621] gi|228614295|gb|EEK71406.1| Transcriptional regulator, Xre [Bacillus cereus AH621] Length = 190 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E L + G++ + K E+G + + Sbjct: 1 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEDLAQKTGVSKLTLGKIERGETNPTLAVI 60 Query: 60 QHISEVLESPISFFF 74 I++ L P+S Sbjct: 61 WKITKGLSIPLSRLM 75 >gi|258511448|ref|YP_003184882.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478174|gb|ACV58493.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 312 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 11/134 (8%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH------ISEVLE 67 +G+ +R RR LG++ E + E I + ++ E G V R+ +EVL Sbjct: 4 QLGQILRARRESLGLTVEDIEERTKIRKRYIEALESGQWDVLPGRVYARGFVRSYAEVLG 63 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR--QKIIELVRS 125 S + S+E + +P NR + ++ + + E+ R+ Sbjct: 64 LDGSELLEKYVDGGDAGSAEPGVRAE---SPALTSENRAADRKPAARMVEPRSLNEMERT 120 Query: 126 IVSSEKKYRTIEEE 139 + +++ E Sbjct: 121 RSRAHERHERSRRE 134 >gi|227431574|ref|ZP_03913612.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352668|gb|EEJ42856.1| transcriptional regulator [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 79 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++ R++ +SQ++L E +G++ Q + EKG I+ + ++ F Sbjct: 9 INNKVYEFRVLARLSQQELAEKVGVSKQTIFVMEKGKYFPTLLLAFRIATFFKVDLTDIF 68 Query: 75 DVSPTVCSDIS 85 + Sbjct: 69 SYDIGGTENED 79 >gi|225405510|ref|ZP_03760699.1| hypothetical protein CLOSTASPAR_04730 [Clostridium asparagiforme DSM 15981] gi|225042963|gb|EEG53209.1| hypothetical protein CLOSTASPAR_04730 [Clostridium asparagiforme DSM 15981] Length = 63 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 21/54 (38%) Query: 21 LRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R +G+SQE+ L ++ Q V E G I++ + I F Sbjct: 3 QLRKEMGLSQEEFARALRVSRQTVSSIENGKYNPSLELAFQIADFFQKTIEELF 56 >gi|168997477|gb|ACA42495.1| hypothetical protein [Streptococcus dysgalactiae subsp. equisimilis] Length = 119 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 31/90 (34%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ KK +G I+ R+ G+++E++G + I + + E + + Sbjct: 1 MMDRKKHRTFDFKPLGLAIKEARLSKGLTREQVGSMIQIAPRYLTNIENKGQQTSFHVVY 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN 90 + +L + F + Sbjct: 61 DLVTLLNISLDGFILGEENSHKSSKRLQVE 90 >gi|281356298|ref|ZP_06242790.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] gi|281316990|gb|EFB01012.1| transcriptional regulator, XRE family [Victivallis vadensis ATCC BAA-548] Length = 193 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +G RI++ R M+ + L + G+T + K E L I+ LE+ ++ Sbjct: 6 IALGTRIKMARKERKMTLQTLADRTGLTAGLLSKIENFRTIPSLPVLVDIAAALETDLAE 65 Query: 73 FFDVS 77 FF Sbjct: 66 FFRDM 70 >gi|90962310|ref|YP_536226.1| DNA-binding protein [Lactobacillus salivarius UCC118] gi|90821504|gb|ABE00143.1| DNA-binding protein [Lactobacillus salivarius UCC118] Length = 203 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 32/65 (49%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +GK I RR L +Q L + LGIT + V K+E G + AS + + ++LE ++ Sbjct: 4 KKIGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIPDASLMLDLCQLLEINVNE 63 Query: 73 FFDVS 77 Sbjct: 64 LLTGE 68 >gi|328478348|gb|EGF48126.1| XRE family transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 112 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 27/62 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R ++Q ++G L ++ + + +E G + S L IS++ + + Sbjct: 6 KLKQARQQHHLTQMQVGTQLHVSAKTISSWENGRSFPDISTLVSISDLYQISLDQLLRED 65 Query: 78 PT 79 Sbjct: 66 QD 67 >gi|328477026|gb|EGF47309.1| transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 106 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 41/76 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L S+E+L + + + QQV ++EKG++ +L IS+ LE + Sbjct: 3 IGEQIKDRREALAWSKEELAQAVNGSVQQVSRWEKGISYPNIKQLIAISDRLELSLDNLI 62 Query: 75 DVSPTVCSDISSEENN 90 P + I ++N Sbjct: 63 QSDPKLQKTIQIDKNA 78 >gi|313620744|gb|EFR92003.1| transcriptional activator, putative [Listeria innocua FSL S4-378] Length = 300 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 7/113 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+ IR R+ G++Q+++ + I+ +EKG + + S + I + + FF Sbjct: 5 GELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILARIMVSLDEFFF 63 Query: 75 ---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV--KVRQKIIEL 122 + S T E + +L D ++R+ I+++ Sbjct: 64 IYREFSSTEDDSFWIELVAELHKNDVSGLERLLDKISAKRDDRTELRKAILQI 116 >gi|296503848|ref|YP_003665548.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] gi|296324900|gb|ADH07828.1| PbsX family transcriptional regulator [Bacillus thuringiensis BMB171] Length = 67 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L M+QE L + +G+ + + EKG I++ L S I F Sbjct: 6 KIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDEIFIFE 65 Query: 78 P 78 Sbjct: 66 D 66 >gi|296327461|ref|ZP_06870007.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155287|gb|EFG96058.1| MerR family transcriptional regulator [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 205 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N K+ ++ VG I+ R + + + GI+ + + EKG + ++ I Sbjct: 17 DNIKMNKEIN--VGITIKNIRKSKKLLLKDVALKCGISSSMLSQIEKGNANPSLNTIKSI 74 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPD 99 ++VLE P+ FF + + + IST Sbjct: 75 AQVLEVPLFKFFMDLEKEKYEFHLLKKDDRKIISTEY 111 >gi|282167052|gb|ADA81068.1| DNA-binding protein, putative [Staphylococcus aureus] Length = 182 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 35/101 (34%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R R MS + L + ++ + + EKG S L I+E L P+ Sbjct: 4 INEIIATNLRKIRNQKRMSLDDLSKLTSVSKAVLFQIEKGTTNPTISTLWKIAEGLNIPL 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 S + E + D + + ++ Sbjct: 64 SNIIHKRKSATIVRKDETIPLNDNSNNVKIYSHIPCYRNLE 104 >gi|300777210|ref|ZP_07087068.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300502720|gb|EFK33860.1| transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 260 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 26/61 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + IR R +SQ++L + + ++ + KYE G + L IS+ I V Sbjct: 6 ENIRYLRAQKKLSQQELAKEIFLSRVRYSKYEDGRSEAPYEVLIRISKYFNISIDLLLTV 65 Query: 77 S 77 Sbjct: 66 D 66 >gi|218290565|ref|ZP_03494674.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] gi|218239468|gb|EED06664.1| transcriptional regulator, XRE family [Alicyclobacillus acidocaldarius LAA1] Length = 82 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 28/58 (48%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 D VG+R+R R++ G++QE + C T Q+ + E G + L+ + P Sbjct: 4 DWEVGQRLRALRLLSGVTQEYVAYCARTTQAQIARVELGTRQPTLCVLRGYARATGDP 61 >gi|254436317|ref|ZP_05049823.1| Helix-turn-helix domain protein [Nitrosococcus oceani AFC27] gi|207088007|gb|EDZ65280.1| Helix-turn-helix domain protein [Nitrosococcus oceani AFC27] Length = 132 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 3/83 (3%) Query: 2 VGNKKIPNPVDINV--GKR-IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASR 58 VG + +P+ V + G+ I++ R+ G++Q L E ++ + EKG Sbjct: 49 VGGEAMPHEVVKRLVEGENPIKVWRIYRGLTQHNLAEQAELSQSYLAMIEKGEREGTVKA 108 Query: 59 LQHISEVLESPISFFFDVSPTVC 81 L+ I++VL I D Sbjct: 109 LKQIAKVLGVDIDDLVDTRDQDV 131 >gi|154484029|ref|ZP_02026477.1| hypothetical protein EUBVEN_01737 [Eubacterium ventriosum ATCC 27560] gi|149735071|gb|EDM50957.1| hypothetical protein EUBVEN_01737 [Eubacterium ventriosum ATCC 27560] Length = 118 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D G I+ R G+++E++G + I + + E + Sbjct: 2 RKKEDKYDFRAFGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVFYDLV 61 Query: 64 EVLESPISFFF 74 +L FF Sbjct: 62 HLLNVSADAFF 72 >gi|42520147|ref|NP_966062.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] gi|42409884|gb|AAS13996.1| transcriptional regulator, putative [Wolbachia endosymbiont of Drosophila melanogaster] Length = 215 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 12/124 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I R++ G +Q L +G+T+Q+V YE G + L I+ VL Sbjct: 16 IGQKIENCRLMRGHTQIGLAGQVGLTYQEVNSYENGYTPIPIGVLYVIARVLSVNAVDLL 75 Query: 75 ---------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 ++ N P ++ +I+ + R +E+ ++ Sbjct: 76 PKLITVREYKDEDEEILYLTKIYENQKLGKIVPSLVRFVHISEKINQEEAR---LEVAKN 132 Query: 126 IVSS 129 +V Sbjct: 133 LVKE 136 >gi|33152220|ref|NP_873573.1| hypothetical protein HD1096 [Haemophilus ducreyi 35000HP] gi|33148442|gb|AAP95962.1| hypothetical protein HD_1096 [Haemophilus ducreyi 35000HP] Length = 129 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + ++IR R +SQE++ + + ++ +K E G +R+ RL+ I+E LE Sbjct: 1 MEIFEKIRSLRKNHNLSQEEIADKINLSVSGYRKIENGKSRINHKRLEQIAEALEVSPLD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 S S + N S+ +++ QI ++ + E + + + Sbjct: 61 LIPNSWRHGSSVYQVGKNGFYGDSSR-AIEIELLKQQIKQEQLIKAKDETIE----DKNR 115 Query: 133 YRTIEEECMV 142 + EE + Sbjct: 116 LISRLEEMLK 125 >gi|51247424|pdb|1SQ8|A Chain A, A Variant 434 Repressor Dna Binding Domain Devoid Of Hydroxyl Groups, Nmr, 20 Structures Length = 64 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR+ LG++Q +L + +G+ Q +++ E G + L ++ L + + + Sbjct: 4 GERIRARRIQLGLNQAELAQKVGVDQQAIEQLENGKAK-RPRFLPELARALGVAVDWLLN 62 Query: 76 VS 77 + Sbjct: 63 GA 64 >gi|295110215|emb|CBL24168.1| Helix-turn-helix. [Ruminococcus obeum A2-162] Length = 372 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 46/112 (41%), Gaps = 11/112 (9%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 IN+G+ + R G++Q++L LG++ V K+E G + L ++ + I Sbjct: 4 INIGRVLIKNRHKRGITQDELATHLGVSKGAVSKWETGSSLPDILLLPQLASYFDISIDE 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 P + + ++L++ F + +V + +++ + Sbjct: 64 LIGYQPQMEQEDIK-----------KLYIRLSKDFSMLSFEEVLAECLKIAK 104 >gi|296102379|ref|YP_003612525.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056838|gb|ADF61576.1| XRE family transcriptional regulator [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 175 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 35/93 (37%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + ++ ++ +R G S KL E G++ + + E+ + S L I+ L P Sbjct: 3 ITQHLATTLKTQRQARGWSLSKLAEETGVSKAMLGQIERNESSPTVSTLWKIATGLNVPF 62 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 S F + ++ ++ P L Sbjct: 63 SAFITPEADRQAVFDPQQQAMVVKPLFPWDETL 95 >gi|290956627|ref|YP_003487809.1| regulator protein [Streptomyces scabiei 87.22] gi|260646153|emb|CBG69246.1| putative regulator protein [Streptomyces scabiei 87.22] Length = 410 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 7/114 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 +G+RI R G +Q L +G + + K E+G +L ++ VL P+S Sbjct: 10 IGQRIAFYRERRGYTQPVLAGLVGHSTDWLSKIERGVRKPPRIDKLAELARVLRVPLSDL 69 Query: 74 F------DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + D+ + + +M L Q+ + Q +E Sbjct: 70 MGQPVLLEDEEKHMDDVPAVRDALMSPRRLSKQLFGPTAERQLPRPEQAQVFVE 123 >gi|297545444|ref|YP_003677746.1| helix-turn-helix domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843219|gb|ADH61735.1| helix-turn-helix domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 438 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 3/110 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RIR R + Q L + + EKG L I++ L P+ +F Sbjct: 5 ELGRRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVYF 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 D ++ E + + + L R F + + + ++++ Sbjct: 64 LDEDYVEKEELKKELSKYKNIL--EKFLNAQRAFDSKNYEEAIKLYLDIL 111 >gi|296124304|ref|YP_003632082.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] gi|296016644|gb|ADG69883.1| helix-turn-helix domain protein [Planctomyces limnophilus DSM 3776] Length = 380 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R R++ G++Q++L E GI+ V E + +S L + + FD Sbjct: 30 NQVRKFRLLAGLTQQQLAEQSGISRTAVTAIEGAKLVPSVAAALALSRTLGASVEDLFDS 89 Query: 77 SP 78 SP Sbjct: 90 SP 91 >gi|229004528|ref|ZP_04162267.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4] gi|228756719|gb|EEM06025.1| Transcriptional regulator, Xre [Bacillus mycoides Rock1-4] Length = 404 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+++ LE SF Sbjct: 4 LGEKIKALRKEKRLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLL 62 Query: 75 DVSPTVCSDISS 86 + + + Sbjct: 63 EEDNEEVAKLLP 74 >gi|255279936|ref|ZP_05344491.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] gi|255269709|gb|EET62914.1| putative helix-turn-helix protein [Bryantella formatexigens DSM 14469] Length = 642 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + + R G +Q ++ E L I+ YE G L I ++L+ + F Sbjct: 9 LTMYRRQRGYTQAEMAEKLEISRSTYTNYETGNRAPDFETLIQIGDILDCSLDELFGRD 67 >gi|160940976|ref|ZP_02088315.1| hypothetical protein CLOBOL_05870 [Clostridium bolteae ATCC BAA-613] gi|158436066|gb|EDP13833.1| hypothetical protein CLOBOL_05870 [Clostridium bolteae ATCC BAA-613] Length = 66 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 22/63 (34%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R ++QE+L LG+T Q + E G IS I F Sbjct: 4 RIQELRKQNKVTQEELALALGVTRQTIISLENGKYNASLQLAFKISRFFGKSIEDIFLFE 63 Query: 78 PTV 80 Sbjct: 64 EEE 66 >gi|45358838|ref|NP_988395.1| hypothetical protein MMP1275 [Methanococcus maripaludis S2] gi|45047704|emb|CAF30831.1| hypothetical protein MMP1275 [Methanococcus maripaludis S2] Length = 184 Score = 41.7 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + R+R R + +S E++ L I+ + Q YE+G + AS L I+ E + Sbjct: 6 KEIASRVRELRELSEISIEEMANHLQISPEIYQHYEEGTCDIPASVLYEIAHKFEVDMGL 65 Query: 73 FFDVSPTV 80 T Sbjct: 66 LLTGEETR 73 >gi|330987993|gb|EGH86096.1| DNA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 378 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%) Query: 23 RMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCS 82 R G+S ++ L + ++++++E G R + Q + V P F F P V Sbjct: 16 RERAGLSAAQVARKLPVKPERIKEWEAGKARPTFLQAQKWASVAHVPFGFLFLPQPPVEQ 75 Query: 83 DISSEENNVMDFISTPDGLQLN 104 + V + L+L Sbjct: 76 LPLPDLRTVGNSAPLRPSLELL 97 >gi|312199827|ref|YP_004019888.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311231163|gb|ADP84018.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 170 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 5/100 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ--VQKYEKGVNRVGASRLQHISEVLESPI 70 VG R+R R+ G+S + + + ++ V YE+G + +L ++ P+ Sbjct: 10 KAVGSRLRAIRIQQGLSLQGVEQKSRGRWKTAAVGSYERGDRMISVHQLSELAGFYGVPV 69 Query: 71 SFFF---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 S D P + N + PD L R + Sbjct: 70 SALLPNEDQMPPRERRPRTVLNLEKLAQAPPDTSALVRRW 109 >gi|262194441|ref|YP_003265650.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262077788|gb|ACY13757.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 79 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 27/71 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++QE+ E L I+ + E+G S L+ ++ + Sbjct: 9 IGNAVRDGRKAFGLTQEQAAERLDISADYYGRVERGAAIPSVSMLRRLAVAFGLDGNVLL 68 Query: 75 DVSPTVCSDIS 85 + + Sbjct: 69 GLGDADLDTSA 79 >gi|225869491|ref|YP_002745438.1| DNA-binding protein [Streptococcus equi subsp. equi 4047] gi|225698895|emb|CAW91878.1| putative DNA-binding protein [Streptococcus equi subsp. equi 4047] Length = 120 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 31/76 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ +SQ+ L E L I+ Q + K+E G L ++ VLE + Sbjct: 6 EQLKKYRLEKQLSQDALAEKLFISRQAISKWENGDATPDLENLVTLAAVLEVTLDELVTG 65 Query: 77 SPTVCSDISSEENNVM 92 I E + Sbjct: 66 KEPAIKVIKKTEKPMN 81 >gi|218460197|ref|ZP_03500288.1| probable transcriptional regulator protein [Rhizobium etli Kim 5] Length = 215 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 2/117 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++R R L ++Q + E L I+ + E+ + L ++ V + Sbjct: 9 GPKLRRIRNALALTQTAMAEALEISPSYLNLIERNQRPLTVQLLLKLAAVYRVDLEELRG 68 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + S + + + P +L + +I+L R+ + Sbjct: 69 QTGGSLSQLKEVFADPLLSGELPGDQELVEVAEAAPNAA--SGMIKLYRAYREQAAR 123 >gi|169333659|ref|ZP_02860852.1| hypothetical protein ANASTE_00043 [Anaerofustis stercorihominis DSM 17244] gi|169259653|gb|EDS73619.1| hypothetical protein ANASTE_00043 [Anaerofustis stercorihominis DSM 17244] Length = 129 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 2/111 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 N+G R++ R +QE + E I+ E G + + L I VL + Sbjct: 6 KNIGNRLKEIRKRERYTQENVAEFADISTSHYSHIENGTTKPSLNTLIRIVNVLNVSMDE 65 Query: 73 FFDVS--PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 D+ E + + + L I + + K + IIE Sbjct: 66 VLDIELNKKSLYITLEEIDKIFRNCNMKQRNLLINNMIYLQNNKFPECIIE 116 >gi|168207127|ref|ZP_02633132.1| transcriptional regulator, XRE family [Clostridium perfringens E str. JGS1987] gi|170661532|gb|EDT14215.1| transcriptional regulator, XRE family [Clostridium perfringens E str. JGS1987] Length = 134 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R + +SQ +L + LGI+ + YE G + + L IS+ + + Sbjct: 12 NNLKTLRKLNLLSQSELSKLLGISRSSLSFYESGESEPTLNVLIKISKFFNVSLDYL 68 >gi|163816403|ref|ZP_02207769.1| hypothetical protein COPEUT_02592 [Coprococcus eutactus ATCC 27759] gi|158448400|gb|EDP25395.1| hypothetical protein COPEUT_02592 [Coprococcus eutactus ATCC 27759] Length = 213 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 27/72 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R+ M+Q++L + G+ ++ YE G + L +I+ L Sbjct: 9 VGYLIRNFRIASDMTQKELADKCGLNESTIRNYELGNRYPDEATLLNIANNLGVSFYALS 68 Query: 75 DVSPTVCSDISS 86 D Sbjct: 69 DPDVANIFSALH 80 >gi|94968567|ref|YP_590615.1| MerR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550617|gb|ABF40541.1| transcriptional regulator, MerR family [Candidatus Koribacter versatilis Ellin345] Length = 292 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 5/127 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+RL R G+S ++ E +GI+ + E+ + L+ +++ + I F Sbjct: 118 VGLRLRLVRTSRGLSLAQVAEAVGISVGFLSAIERSAMSASVATLRKLAKFYKLNILDLF 177 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 D S + E +D S ++L + + + + + S +++Y Sbjct: 178 DQSGGRQYLVRPAERRQLD-ASDGVRMELLAWGNPVMEPH----LFHVAPGAGSGDEEYS 232 Query: 135 TIEEECM 141 EE + Sbjct: 233 HEGEEFL 239 >gi|9635004|ref|NP_056720.1| putative DNA binding protein [Streptococcus phage Sfi11] gi|7523564|gb|AAF63067.1|AF158600_21 putative DNA binding protein [Streptococcus phage Sfi11] Length = 167 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 33/75 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ L R +++ +L E +G++ V K E G +++ + +++ + + + Sbjct: 2 NRLYLLRESRKITRVELAEKIGVSKLTVLKLEHGTSKISRREAKKLADFFGVSVGYLLGL 61 Query: 77 SPTVCSDISSEENNV 91 T + ++ N Sbjct: 62 DTTENDSLIAKINEW 76 >gi|148263207|ref|YP_001229913.1| helix-turn-helix domain-containing protein [Geobacter uraniireducens Rf4] gi|146396707|gb|ABQ25340.1| helix-turn-helix domain protein [Geobacter uraniireducens Rf4] Length = 77 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 28/76 (36%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 +K + + + IR R SQE+L E G+ + E+G V S L+ ++ Sbjct: 2 RKASENIRAILAENIRNFRHKKNFSQEELAEKCGLHRTYIGSVERGERNVTLSTLEVLAS 61 Query: 65 VLESPISFFFDVSPTV 80 L + Sbjct: 62 TLGVSVPELLSKDARP 77 >gi|326390094|ref|ZP_08211656.1| Tetratricopeptide TPR_2 repeat-containing protein [Thermoanaerobacter ethanolicus JW 200] gi|325993959|gb|EGD52389.1| Tetratricopeptide TPR_2 repeat-containing protein [Thermoanaerobacter ethanolicus JW 200] Length = 436 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 3/111 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +GKRIR R + Q L + + EKG L I++ L P+ + Sbjct: 4 VELGKRIREERKRQFLKQGDLSGD-EFSKGYISLIEKGKISPSLKALNFIAQKLNKPVVY 62 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F D ++ E + + Q + F + + + I+++ Sbjct: 63 FLDEDYVEKEELKKELAKYKNILEKFLTAQ--KAFDNKNYDEAIKLYIDIL 111 >gi|323190487|gb|EFZ75761.1| helix-turn-helix family protein [Escherichia coli RN587/1] Length = 238 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 2/89 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +RIR RR +G++Q+++ + +GI+ V K+E G ++ L +S++L + Sbjct: 19 ISERIRNRRKDVGLTQQQVAKAIGISRVSVTKWENGSSKPDGENLYLLSKLLSKSPEWIL 78 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQL 103 C D + + + + +L Sbjct: 79 YGKD--CHDKTDDLRLNQYPYISDNIARL 105 >gi|320333173|ref|YP_004169884.1| helix-turn-helix domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319754462|gb|ADV66219.1| helix-turn-helix domain protein [Deinococcus maricopensis DSM 21211] Length = 129 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 25/66 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +R+R R G+ + + E GI+ + E+G LQ ++ + Sbjct: 1 MKLHERLRELRSERGLRLKDVAETAGISVPYLSDLERGRTNPSLDTLQTLAGAYTITVHD 60 Query: 73 FFDVSP 78 + Sbjct: 61 LLEGVE 66 >gi|289649274|ref|ZP_06480617.1| PbsX family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 109 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 12/118 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 V R++L R G+ Q ++ E + + +YE+ L ++++ Sbjct: 4 FVAARLKLLRTGKGLKQSEVAELIDCEPNTISRYERAETMPNIEDLLRLADLFGVSPMEI 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + I N L +Q++ ++ +++I+L S+ +K Sbjct: 64 LPPQDSTTQRIHMLRQN------------LTEKSLQLETIEDLEQLIKLADSLRDKKK 109 >gi|317133145|ref|YP_004092459.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] gi|315471124|gb|ADU27728.1| helix-turn-helix domain protein [Ethanoligenens harbinense YUAN-3] Length = 119 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 43/106 (40%), Gaps = 3/106 (2%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFFFD 75 +R+ R G++ E+L + G+ V+K G ++ +++ L + D Sbjct: 5 ERLSYLRKQKGVTIEQLSDRSGVPLSTVKKICAGITANPNLETVKMLAKALNCRLDDLDD 64 Query: 76 VSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKI 119 S +S +E ++D + G + R + + +++I Sbjct: 65 ESAQNQESLSRDEQQLIDGYRELSAQGKEYIRQTMSMAKNTYKKRI 110 >gi|288917740|ref|ZP_06412103.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] gi|288350955|gb|EFC85169.1| transcriptional regulator, XRE family [Frankia sp. EUN1f] Length = 254 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 30/74 (40%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ + +R R G++ +L G++ + K E + L ++E L+ P+ Sbjct: 64 LERAIAGNVRRLRHDRGLTLAELAARSGVSSAMISKVENASISCSLTTLDRLAETLDVPV 123 Query: 71 SFFFDVSPTVCSDI 84 + F + + Sbjct: 124 TSLFRGADAAREAV 137 >gi|256396335|ref|YP_003117899.1| XRE family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362561|gb|ACU76058.1| transcriptional regulator, XRE family [Catenulispora acidiphila DSM 44928] Length = 470 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 20/55 (36%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R G++QE G+ V ++E G + I+ VL + Sbjct: 14 LARAREAAGLTQEAFATRAGVEVSTVVRWESGCTTPLPGKRPQIARVLGVGLHDL 68 >gi|227522811|ref|ZP_03952860.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290] gi|227090012|gb|EEI25324.1| transcriptional regulator [Lactobacillus hilgardii ATCC 8290] Length = 198 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + V K +R R+ G S KL E G++ + + E + + I L P Sbjct: 12 DIGAIVSKNLRKIRLEKGFSLTKLSELSGVSKGMLSQIENNGTSPTINTIWKICAGLSVP 71 Query: 70 ISFFFDVSPTVCSDISSEENN 90 + + I N Sbjct: 72 YTALLEGRVETTKIIKKSAIN 92 >gi|225017271|ref|ZP_03706463.1| hypothetical protein CLOSTMETH_01197 [Clostridium methylpentosum DSM 5476] gi|224949956|gb|EEG31165.1| hypothetical protein CLOSTMETH_01197 [Clostridium methylpentosum DSM 5476] Length = 230 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 2/104 (1%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R G+SQ++ + LG++ + YEKG+ G + + ++ + F SP Sbjct: 12 LRKEKGISQKQAAQELGVSQALLSHYEKGIRECGLAFVIRAADFYDVSCDFLLGRSPERK 71 Query: 82 SDIS--SEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 E + P+ L+ + + + + +L+ Sbjct: 72 GTTLTVEELPEPAESKERPNPKTLSAIYNKKLLMSSLNILYDLL 115 >gi|169825512|ref|YP_001695687.1| hypothetical protein Bsph_p098 [Lysinibacillus sphaericus C3-41] gi|168994789|gb|ACA42328.1| conserved hypothetical protein with Helix-turn-helix motif [Lysinibacillus sphaericus C3-41] Length = 75 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 27/65 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N +++ GK +++ R G+SQE+L + + E+ + + + I L Sbjct: 2 NNLNVAFGKVLKIYRKDAGLSQEQLALQCDLDRTYIGLLERAERQPSITTIFKICTALNV 61 Query: 69 PISFF 73 F Sbjct: 62 KPHEF 66 >gi|163757791|ref|ZP_02164880.1| Transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] gi|162285293|gb|EDQ35575.1| Transcriptional regulator, XRE family protein [Hoeflea phototrophica DFL-43] Length = 182 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 30/85 (35%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + ++ + R++ R G S ++L + G++ + + E G A L +S + Sbjct: 2 DTLNDRLADRLKQLRATRGWSLQQLADISGVSRSALSRIETGEVSPTAETLGAMSSAFQM 61 Query: 69 PISFFFDVSPTVCSDISSEENNVMD 93 IS + E Sbjct: 62 TISQLLAPVEAPFQPLVRAEEQSTW 86 >gi|156934014|ref|YP_001437930.1| hypothetical protein ESA_01840 [Cronobacter sakazakii ATCC BAA-894] gi|156532268|gb|ABU77094.1| hypothetical protein ESA_01840 [Cronobacter sakazakii ATCC BAA-894] Length = 199 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 10/88 (11%), Positives = 34/88 (38%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + + ++++ R ++ + L + G++ + + EK + L Sbjct: 1 MTEPGADVDSLSVALAQKLKAWRKEHKVTLDALSQRAGVSKGMLVELEKAAANPSIAILC 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEE 88 ++ L ++ DV+ + + Sbjct: 61 KVAAALGLSVADLLDVASQPAARLIEAT 88 >gi|126699634|ref|YP_001088531.1| putative phage regulatory protein [Clostridium difficile 630] gi|254975609|ref|ZP_05272081.1| putative phage regulatory protein [Clostridium difficile QCD-66c26] gi|255092997|ref|ZP_05322475.1| putative phage regulatory protein [Clostridium difficile CIP 107932] gi|255101147|ref|ZP_05330124.1| putative phage regulatory protein [Clostridium difficile QCD-63q42] gi|255307021|ref|ZP_05351192.1| putative phage regulatory protein [Clostridium difficile ATCC 43255] gi|255314738|ref|ZP_05356321.1| putative phage regulatory protein [Clostridium difficile QCD-76w55] gi|255517412|ref|ZP_05385088.1| putative phage regulatory protein [Clostridium difficile QCD-97b34] gi|255650522|ref|ZP_05397424.1| putative phage regulatory protein [Clostridium difficile QCD-37x79] gi|260683623|ref|YP_003214908.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260687283|ref|YP_003218417.1| putative phage regulatory protein [Clostridium difficile R20291] gi|306520479|ref|ZP_07406826.1| putative phage regulatory protein [Clostridium difficile QCD-32g58] gi|115251071|emb|CAJ68902.1| Transcriptional regulator, HTH-type [Clostridium difficile] gi|260209786|emb|CBA63606.1| putative phage regulatory protein [Clostridium difficile CD196] gi|260213300|emb|CBE04858.1| putative phage regulatory protein [Clostridium difficile R20291] Length = 123 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 52/127 (40%), Gaps = 20/127 (15%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI R L ++Q++L +GIT + +YE + + + +++ LE+ + Sbjct: 4 LGDRIANLRKELDINQKELATKVGITEASLSRYENNLREPKSEIIVRLAKALETSTDYLL 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 V+ + I+++ V +K +L+ I S EK+ R Sbjct: 64 GVNDNTKISKEDKLI--------------------IENLSVSEKTKKLLEKIYSLEKEDR 103 Query: 135 TIEEECM 141 E+ + Sbjct: 104 EAIEKMI 110 >gi|332706307|ref|ZP_08426372.1| putative transcriptional regulator [Lyngbya majuscula 3L] gi|332707822|ref|ZP_08427849.1| putative transcriptional regulator [Lyngbya majuscula 3L] gi|332353525|gb|EGJ33038.1| putative transcriptional regulator [Lyngbya majuscula 3L] gi|332354924|gb|EGJ34399.1| putative transcriptional regulator [Lyngbya majuscula 3L] Length = 70 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS--RLQHISEVLESPISF 72 +G ++ RR L ++Q ++ LG+T VQ +E G + +L+ + ++L+ + Sbjct: 4 LGDNLKKRRESLNITQREIAHELGVTVTTVQNWEAGRHIPKLYPNQLKALCDLLKVTLDE 63 Query: 73 F 73 Sbjct: 64 L 64 >gi|317497673|ref|ZP_07955988.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895007|gb|EFV17174.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 105 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 30/80 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I+ R +G++Q ++ E LG+T + E + L + +++ + Sbjct: 7 GTHIKHIRQKMGLTQNQVAEALGVTPGYISNVENNRTAMSLRILTYYAKLCGCSLDSLVG 66 Query: 76 VSPTVCSDISSEENNVMDFI 95 S+ + + + Sbjct: 67 TLDPEYSETALDRKLYNTIM 86 >gi|295091540|emb|CBK77647.1| Helix-turn-helix. [Clostridium cf. saccharolyticum K10] Length = 119 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 38/113 (33%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + +P G I+ R S++K+ + + I+ + + E Sbjct: 3 MAKRPVPKYDFKAFGAAIKAARTDRKESRKKVCDEMFISPRYLANIENNGQHPSLQIFFE 62 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 + + F P + + + ++D IS + +I +V+ Sbjct: 63 LMLRYNISVDQFLSDKPAEKNTQRRQLDALLDGISDMGIRIVTATAKEIAEVE 115 >gi|317127593|ref|YP_004093875.1| XRE family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315472541|gb|ADU29144.1| transcriptional regulator, XRE family [Bacillus cellulosilyticus DSM 2522] Length = 69 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 27/68 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R++ R ++Q +L E + +T Q + EKG +IS PI Sbjct: 1 MTIKNRVKELRARHSLTQGELAESVNVTRQTIVALEKGSYTPSLLLAMNISHTFNMPIEE 60 Query: 73 FFDVSPTV 80 F + Sbjct: 61 IFYLEEEK 68 >gi|229553880|ref|ZP_04442605.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] gi|229312757|gb|EEN78730.1| xre family transcriptional regulator [Lactobacillus rhamnosus LMS2-1] Length = 137 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 28/90 (31%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R G S ++ + + K+E ++ ++E ++ Sbjct: 14 VGSVLRQIRKSRGESIVEVAKATHTSPASFTKWENDQTIPSERSIRKLAEYYQTDPLELL 73 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 V+ E+ ST L Sbjct: 74 GVAYPDKYAKQQEQEKAAAEGSTIRIEDLI 103 >gi|227115336|ref|ZP_03828992.1| hypothetical protein PcarbP_20365 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 88 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 18 RIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R++ R+ ++QEKLG GI ++ +YE G++R + ++VL P +F Sbjct: 5 RLKTARLRANLTQEKLGVLAGIEEATARSRISQYESGIHRPTFEMMCAFAKVLNVPECYF 64 Query: 74 FDVSPTVCSDISSEEN 89 + V I N Sbjct: 65 YTVDDDFAEVILKLHN 80 >gi|222151832|ref|YP_002560992.1| hypothetical protein MCCL_1589 [Macrococcus caseolyticus JCSC5402] gi|222120961|dbj|BAH18296.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 415 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 1/74 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R ++ E L T + E N L++I+E L + +S Sbjct: 4 LGSRIRNLRKEKKLTLEALAGDYM-TKGMLSLIENNKNNPSMESLEYIAERLGTSVSALL 62 Query: 75 DVSPTVCSDISSEE 88 + V ++ E Sbjct: 63 EDGSEVTTNNIYNE 76 >gi|254512804|ref|ZP_05124870.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] gi|221532803|gb|EEE35798.1| transcriptional regulator, XRE family [Rhodobacteraceae bacterium KLH11] Length = 200 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 29/84 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ IR R G + E+ G GI + K E R ++ +++ L+ Sbjct: 20 ALGRSIRDARRAKGWTLEEAGRAAGIGRSTLSKIENNHTRPSFDIVRRLTQALDMSTPQL 79 Query: 74 FDVSPTVCSDISSEENNVMDFIST 97 F S + + + Sbjct: 80 FLQSGQSAISGRRDFTPKGEGEAR 103 >gi|91792424|ref|YP_562075.1| transciptional regulator [Shewanella denitrificans OS217] gi|91714426|gb|ABE54352.1| transcriptional regulator [Shewanella denitrificans OS217] Length = 195 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 23/60 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G IR R S + L + G++ + + E G L +++ + + F Sbjct: 15 YIGLFIRSFRQANHESLQSLADRSGVSRSMISQIESGQKSPTIMILAKLADAMSISLEDF 74 >gi|78060915|ref|YP_370823.1| transcriptional regulator [Burkholderia sp. 383] gi|77968800|gb|ABB10179.1| transcriptional regulator, XRE family with cupin sensor domain [Burkholderia sp. 383] Length = 211 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 9/132 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG R+R R G++ +L E GI + K E+G + + ++ L F Sbjct: 23 VGARLRDARKSRGLTLAQLSERSGIAVSTISKAERGDIALTYDKFAALTHALALDFDTMF 82 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL-----VRSIVSS 129 + S + N + + + ++++ + R + Sbjct: 83 GRPAPAGAMTPSFTPAGQQMVYDTP----NYAYGMLANDLTGKRMVPVRGRIHARKLSDF 138 Query: 130 EKKYRTIEEECM 141 R EE + Sbjct: 139 ADYIRHSGEEFV 150 >gi|579178|emb|CAA26567.1| unnamed protein product [Bacillus phage phi105] Length = 147 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 17/134 (12%), Positives = 49/134 (36%), Gaps = 5/134 (3%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + VG+RI+ R ++Q +L E ++ + E+ S L+ ++ L + Sbjct: 2 IIMTVGQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQV 61 Query: 71 SFFFDV-----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 S + E++ L+ + + ++ + L+ + Sbjct: 62 SAIVGEETLIKEEQAEYNSKEEKDIAKRMEEIRKDLEKSDGLSFSGEPMSQEAVESLMEA 121 Query: 126 IVSSEKKYRTIEEE 139 + ++ + I ++ Sbjct: 122 MEHIVRQTQRINKK 135 >gi|91975357|ref|YP_568016.1| anaerobic benzoate catabolism transcriptional regulator [Rhodopseudomonas palustris BisB5] gi|91681813|gb|ABE38115.1| transcriptional regulator, XRE family with shikimate kinase activity [Rhodopseudomonas palustris BisB5] Length = 317 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 47/109 (43%), Gaps = 1/109 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+R+R R + GMS++ L + GI+ + + + E G V L+ +S+ L +P+ Sbjct: 25 LELGQRVRTLRGLRGMSRKVLAKVSGISERYIAQLESGKGNVSIILLRRVSDALATPLED 84 Query: 73 FF-DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 + P++ + + + + ++ R + + Sbjct: 85 LLPNSDPSIDWPVIRDLVRRATPVQIAHAKDVLSGMGRLGAGARRAQAL 133 >gi|332298496|ref|YP_004440418.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] gi|332181599|gb|AEE17287.1| helix-turn-helix domain protein [Treponema brennaborense DSM 12168] Length = 106 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I VG IR R G +Q + E LG+T + E G + ++ +SE+ + P + Sbjct: 6 IIVGDNIRRLRREYGWTQAYVAENLGVTAPFLTMIESGQRGMSLDLIEKLSELFDVPAAS 65 Query: 73 FF 74 FF Sbjct: 66 FF 67 >gi|315221506|ref|ZP_07863426.1| helix-turn-helix protein [Streptococcus anginosus F0211] gi|315189340|gb|EFU23035.1| helix-turn-helix protein [Streptococcus anginosus F0211] Length = 136 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 10/82 (12%), Positives = 27/82 (32%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + ++ R ++QE L E L ++ + ++E L IS + + Sbjct: 1 MKISQVLKDIRQQNQLTQETLAERLKVSRSTIARWESEKGIPDIGNLIAISREFDISLDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + + + Sbjct: 61 LIKEDERLEKKVIEDSKAKKWH 82 >gi|302521866|ref|ZP_07274208.1| conserved hypothetical protein [Streptomyces sp. SPB78] gi|302430761|gb|EFL02577.1| conserved hypothetical protein [Streptomyces sp. SPB78] Length = 214 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLG---------ITFQQVQKYEKGVNRVGASRLQHIS 63 +N+G+RIR RR+ LG SQE+L + Q++ +YE G L I+ Sbjct: 4 MNIGERIRDRRLQLGWSQERLAREACRVAGVGPEKLGRQEIYRYETGRRTPR-DWLAPIA 62 Query: 64 EVLESPISFFFDVSPTVCS 82 + L + S Sbjct: 63 QALGLSVQALSGGQHDADS 81 >gi|294792860|ref|ZP_06758007.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 6_1_27] gi|294456759|gb|EFG25122.1| toxin-antitoxin system, antitoxin component, Xre family [Veillonella sp. 6_1_27] Length = 153 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 5/119 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K ++ R+ +G SQ ++ + +GI+ + YE G L +S + DV Sbjct: 5 KNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDELLDV 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + E + + + ++ D + R + EL EK Sbjct: 65 NGEQ-----HEPIYDLSPVLKNKYIAYKGEVFELKDSQKRALLRELDNLFTKFEKSKVE 118 >gi|289644282|ref|ZP_06476368.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] gi|289505894|gb|EFD26907.1| transcriptional regulator, XRE family [Frankia symbiont of Datisca glomerata] Length = 488 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 4/113 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFF 73 VG +R R G++Q++L E LG V K E G + S L+HI+ L Sbjct: 20 VGLLLRSYRQTFGLTQQQLAERLGFDQSYVSKVESGRRAIHDISTLRHIARRLSLSPEDV 79 Query: 74 ---FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 D + ++ +L R ++ + + + L Sbjct: 80 GLAAGSLIESRRDADPADPLDERIAASQRTWRLTRDYLNHHRISLARAAAGLY 132 >gi|196032329|ref|ZP_03099743.1| DNA-binding protein [Bacillus cereus W] gi|218904481|ref|YP_002452315.1| DNA-binding protein [Bacillus cereus AH820] gi|195995080|gb|EDX59034.1| DNA-binding protein [Bacillus cereus W] gi|218535775|gb|ACK88173.1| DNA-binding protein [Bacillus cereus AH820] Length = 67 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R+ L M+QE L + + + + + EKG I+ L S I F Sbjct: 6 KIKEYRIKLNMTQEDLAKQVSVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 78 PT 79 Sbjct: 66 DE 67 >gi|254974249|ref|ZP_05270721.1| putative transcriptional regulator [Clostridium difficile QCD-66c26] gi|255091646|ref|ZP_05321124.1| putative transcriptional regulator [Clostridium difficile CIP 107932] gi|255099748|ref|ZP_05328725.1| putative transcriptional regulator [Clostridium difficile QCD-63q42] gi|255305633|ref|ZP_05349805.1| putative transcriptional regulator [Clostridium difficile ATCC 43255] gi|255313374|ref|ZP_05354957.1| putative transcriptional regulator [Clostridium difficile QCD-76w55] gi|255516061|ref|ZP_05383737.1| putative transcriptional regulator [Clostridium difficile QCD-97b34] gi|255649158|ref|ZP_05396060.1| putative transcriptional regulator [Clostridium difficile QCD-37x79] gi|260682336|ref|YP_003213621.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260685935|ref|YP_003217068.1| putative transcriptional regulator [Clostridium difficile R20291] gi|306519268|ref|ZP_07405615.1| putative transcriptional regulator [Clostridium difficile QCD-32g58] gi|260208499|emb|CBA61121.1| putative transcriptional regulator [Clostridium difficile CD196] gi|260211951|emb|CBE02448.1| putative transcriptional regulator [Clostridium difficile R20291] Length = 72 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 26/62 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R M+Q +L + +G+ + + E G I++V ++ + F+ Sbjct: 8 KIKSYREKNLMTQGELAKSVGVRRETIVHLENGRYNPSLKLAMDIAKVFDTTVEELFEFI 67 Query: 78 PT 79 Sbjct: 68 EE 69 >gi|260060996|ref|YP_003194076.1| DNA-binding protein [Robiginitalea biformata HTCC2501] gi|88785128|gb|EAR16297.1| DNA-binding protein [Robiginitalea biformata HTCC2501] Length = 64 Score = 41.7 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR+ R +QE+L +G++ Q + EK I+ + E PI F Sbjct: 5 IRVLRAEKNWTQEQLASAIGVSRQTINAIEKEKFDPSLPTAFRIARLFEKPIEAIFTFEE 64 >gi|329666815|gb|AEB92763.1| putative transcriptional regulator [Lactobacillus johnsonii DPC 6026] Length = 273 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 46/112 (41%), Gaps = 8/112 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R LG++QE++ + + I K E+ + + A L I + Sbjct: 1 MTIGEALKRERESLGLTQEEMTKNI-IQKSHYSKIERNIEGISADSLFKILFAHHIDVDE 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 F + D + + +V + ++ F + V++ + E++ Sbjct: 60 FLE----SIKDTYTSKEDVKAGLLEK---RMMNAFNTSNTEAVKKCLAEILE 104 >gi|319937580|ref|ZP_08011985.1| DNA-binding protein [Coprobacillus sp. 29_1] gi|319807420|gb|EFW04029.1| DNA-binding protein [Coprobacillus sp. 29_1] Length = 177 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +I+ R+ ++ E+L +T + + E+ + + L+ I E L + + Sbjct: 1 MNIGSKIKRLRIANQLTLEELANRSELTKGFLSQVERNLTSPSITTLEDILEALGTTLHD 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF + E+ F++T D +++ + +IE+ + S E + Sbjct: 61 FFSETQEEQIVFKKED----YFVNTQDDYEISYIVPNAQKNDMEPILIEIEKGKSSMEME 116 Query: 133 YRTIEE 138 EE Sbjct: 117 PHDGEE 122 >gi|284042165|ref|YP_003392505.1| XRE family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946386|gb|ADB49130.1| transcriptional regulator, XRE family [Conexibacter woesei DSM 14684] Length = 90 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P I G+ IR R+ G+SQE+LG G+ V E+G + + L+ P Sbjct: 13 PTYITFGRTIRELRVRRGLSQEQLGLHGGLHRNYVASIERGEINPTLRTMLRLQRGLDFP 72 Query: 70 ISFF 73 +S Sbjct: 73 LSEI 76 >gi|260589839|ref|ZP_05855752.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|325662733|ref|ZP_08151327.1| hypothetical protein HMPREF0490_02067 [Lachnospiraceae bacterium 4_1_37FAA] gi|260539646|gb|EEX20215.1| toxin-antitoxin system, antitoxin component, Xre family [Blautia hansenii DSM 20583] gi|325470970|gb|EGC74198.1| hypothetical protein HMPREF0490_02067 [Lachnospiraceae bacterium 4_1_37FAA] Length = 143 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 36/81 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++IR R+ G +Q++L G++ ++ YE G + +L+ I+ L+ Sbjct: 1 MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISPYA 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 D + + + D Sbjct: 61 MSDPNFDTYVSVMHALFALED 81 >gi|210612865|ref|ZP_03289498.1| hypothetical protein CLONEX_01700 [Clostridium nexile DSM 1787] gi|210151386|gb|EEA82394.1| hypothetical protein CLONEX_01700 [Clostridium nexile DSM 1787] Length = 223 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 53/132 (40%), Gaps = 5/132 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL + Sbjct: 10 FLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPNEL 69 Query: 74 FDVS----PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 I DF + D L N +F ++ + + I L+R I + Sbjct: 70 LSGEWKYIDHTEPYIMDIIKREQDFNVSLDYLSENEFFDNENEYRFYMETI-LIRYISNY 128 Query: 130 EKKYRTIEEECM 141 EE M Sbjct: 129 LSNEVVEIEELM 140 >gi|126740981|ref|ZP_01756664.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] gi|126717907|gb|EBA14626.1| DNA-binding protein, putative [Roseobacter sp. SK209-2-6] Length = 204 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK IR R G++ E+ + I + K E R ++ + + LE F Sbjct: 24 LGKMIRDARKEKGLTLEEAAKAAAIGRSTLSKIENNQTRPSFEIIRRLMQTLELETPQLF 83 >gi|159043954|ref|YP_001532748.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157911714|gb|ABV93147.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 431 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 4/121 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G RIR RR L + Q L +GI+ + E R+G L +++ L I+ Sbjct: 8 GSRIRERRQSLRIKQADLARQVGISASYLNLIEHNRRRIGGKVLVKLAQALRVDITILTQ 67 Query: 76 VSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDD--VKVRQKIIELVRSIVSSEK 131 + + E + + F R++++ R+I + Sbjct: 68 GAEETLLEGLREAVVSARRSTAEIDRIEEFVARFPGWAQLIAAQRRRMVTQERTIEALND 127 Query: 132 K 132 + Sbjct: 128 R 128 >gi|23464934|ref|NP_695537.1| hypothetical protein BL0333 [Bifidobacterium longum NCC2705] gi|239622527|ref|ZP_04665558.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23325529|gb|AAN24173.1| hypothetical protein with helix turn helix motif [Bifidobacterium longum NCC2705] gi|239514524|gb|EEQ54391.1| predicted protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 298 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 26/68 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R M QE+L LG++ Q + K+E +L I ++ + Sbjct: 5 ANLQYLRAQRNMPQEQLAMLLGVSRQAISKWESEKAYPEMDKLLMICDLFGCTLDDLVLG 64 Query: 77 SPTVCSDI 84 + ++ Sbjct: 65 DVSASVNV 72 >gi|37678326|ref|NP_932935.1| transcriptional regulator [Vibrio vulnificus YJ016] gi|37197065|dbj|BAC92906.1| predicted transcriptional regulator [Vibrio vulnificus YJ016] Length = 68 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 26/65 (40%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + G +R R + G+SQ+KL I V + E+G + + ++ +L Sbjct: 3 DLAKRFGDNLRRERKLKGISQDKLAISADIDRSYVGRIERGEVNITLEKAYQLASILGCD 62 Query: 70 ISFFF 74 + Sbjct: 63 VRDLL 67 >gi|27376226|ref|NP_767755.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349366|dbj|BAC46380.1| blr1115 [Bradyrhizobium japonicum USDA 110] Length = 196 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 13/92 (14%), Positives = 35/92 (38%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D +G+R++ R GM+ +L G++ + + E+ + A+ L + L+ + Sbjct: 9 LDRAIGRRLKTLRTQAGMTLNELAGRSGVSRAMIGRVERAQSSATAALLNKLCAALDVTL 68 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 S ++ + + + Sbjct: 69 SDVVALAEKPPERLMRLADQPHWRDPDSGYRR 100 >gi|319651040|ref|ZP_08005174.1| hypothetical protein HMPREF1013_01784 [Bacillus sp. 2_A_57_CT2] gi|317397210|gb|EFV77914.1| hypothetical protein HMPREF1013_01784 [Bacillus sp. 2_A_57_CT2] Length = 216 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 31/90 (34%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K +G+ ++ +S K + G+ + K G + L+ Sbjct: 1 MLERKMSMADKSNEIGQLLKSLLKERSLSMRKFSQMTGVDTAVISKIINGKRKATPEHLE 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENN 90 ++ IS F++ + +E N Sbjct: 61 RFADYFGVSISRFYESAGYPIDPKQTELNE 90 >gi|312142963|ref|YP_003994409.1| helix-turn-helix domain protein [Halanaerobium sp. 'sapolanicus'] gi|311903614|gb|ADQ14055.1| helix-turn-helix domain protein [Halanaerobium sp. 'sapolanicus'] Length = 112 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 28/68 (41%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + KR++ R + SQ+++ +G Q+ YE G ++ S L S + I +F Sbjct: 7 IAKRLKAARKEMNYSQQEVANFIGKKRSQISYYETGARKINLSLLNQFSNLYGKSIEYFI 66 Query: 75 DVSPTVCS 82 Sbjct: 67 GEREEEDK 74 >gi|284048461|ref|YP_003398800.1| transcriptional regulator, XRE family [Acidaminococcus fermentans DSM 20731] gi|283952682|gb|ADB47485.1| transcriptional regulator, XRE family [Acidaminococcus fermentans DSM 20731] Length = 80 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 24/72 (33%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +IR R I M Q L + + + + + E G I+ V P+ F+ Sbjct: 7 KIRDLRRIHKMQQSDLAKLVHVRRETISNIENGKYNPSLKLALDIAHVFGKPVEDIFEYI 66 Query: 78 PTVCSDISSEEN 89 + E Sbjct: 67 EEDDLHLPDSEK 78 >gi|254555377|ref|YP_003061794.1| transcription regulator [Lactobacillus plantarum JDM1] gi|308179374|ref|YP_003923502.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044304|gb|ACT61097.1| transcription regulator [Lactobacillus plantarum JDM1] gi|308044865|gb|ADN97408.1| transcription regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 67 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R++ G SQ++L GIT Q + EKG ++ VL + F V P Sbjct: 7 VKQYRLMAGFSQKELASKTGITRQTLSLIEKGTYNPSLKLCLNLCHVLNQTLDTVFWVEP 66 Query: 79 T 79 + Sbjct: 67 S 67 >gi|251779099|ref|ZP_04822019.1| transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083414|gb|EES49304.1| transcriptional regulator [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 386 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 42/102 (41%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + +IR R+ G+S +L +G++ Q + +YE G++ A Sbjct: 1 MKKDILNVLDSNKIIPAKIREARISRGLSLSELSTKIGVSSQAISQYELGISTPSALTFI 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQ 102 + E L+ P +FF+ T +S + + + Sbjct: 61 KLVEELDFPSTFFYQQVNTNSLLSNSATYFRSNKNISKKIKE 102 >gi|238761245|ref|ZP_04622222.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC 33638] gi|238761498|ref|ZP_04622474.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC 33638] gi|238700472|gb|EEP93213.1| hypothetical protein ykris0001_22380 [Yersinia kristensenii ATCC 33638] gi|238700725|gb|EEP93465.1| hypothetical protein ykris0001_35970 [Yersinia kristensenii ATCC 33638] Length = 193 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 IR R LG++ +L + GI + + E G L ++ L+ P+S Sbjct: 23 IRREREKLGLTVTELAKRAGIAKSTLSQLEGGAGNPSLETLWSLAMALDVPVSRL 77 >gi|228909127|ref|ZP_04072956.1| Transcriptional regulator,Cro/CI [Bacillus thuringiensis IBL 200] gi|228850635|gb|EEM95460.1| Transcriptional regulator,Cro/CI [Bacillus thuringiensis IBL 200] Length = 66 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 25/63 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R G +Q+ LGE +G + Q + E+ I++ P+ F+ Sbjct: 4 NRIVVCRAEKGWTQQDLGERVGASRQTIASMERNKYNPSLILAFKIAQAFGKPLEEVFEY 63 Query: 77 SPT 79 Sbjct: 64 KEE 66 >gi|227892275|ref|ZP_04010080.1| DNA-binding protein [Lactobacillus salivarius ATCC 11741] gi|227865916|gb|EEJ73337.1| DNA-binding protein [Lactobacillus salivarius ATCC 11741] Length = 211 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I RR L +Q L + LGIT + V K+E G + AS + + ++LE ++ Sbjct: 14 IGKFIAKRRKDLHFTQANLAKKLGITDRAVSKWENGKSIPDASLMLDLCQLLEINVNELL 73 Query: 75 DVS 77 Sbjct: 74 TGE 76 >gi|160937325|ref|ZP_02084687.1| hypothetical protein CLOBOL_02215 [Clostridium bolteae ATCC BAA-613] gi|158439889|gb|EDP17638.1| hypothetical protein CLOBOL_02215 [Clostridium bolteae ATCC BAA-613] Length = 88 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D + G I+ R + GM Q++L + +GI Q + K E+GV L+ I VLE + Sbjct: 3 DKHFGPNIQTFRKLKGMKQQELADAIGINLQSLSKIERGVYYPTFETLEKIMVVLEVAPN 62 Query: 72 FFFDV 76 Sbjct: 63 EMLSG 67 >gi|114569540|ref|YP_756220.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114340002|gb|ABI65282.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 67 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R+ R SQ +LGE +G++ Q + E G + + ++ E I FD Sbjct: 3 NRLRVLRAERRWSQAELGERVGVSRQAINAVETGKHDPSLTLAFALAGAFELAIEAVFDP 62 Query: 77 SPTVC 81 + Sbjct: 63 NGEAD 67 >gi|91785547|ref|YP_560753.1| hypothetical protein Bxe_A0231 [Burkholderia xenovorans LB400] gi|91689501|gb|ABE32701.1| Hypothetical protein Bxe_A0231 [Burkholderia xenovorans LB400] Length = 161 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 28/81 (34%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + + +RIR R + +S L E + + ++ E L+ I+ + Sbjct: 11 SDIPRRLAERIRCARELFDLSLHALSEKAQVDRKSLRSIEAAEFNPSVKTLERIANAFDM 70 Query: 69 PISFFFDVSPTVCSDISSEEN 89 I+ F S + Sbjct: 71 TIAELFGASRGSIPSSLLDAP 91 >gi|302541094|ref|ZP_07293436.1| helix-turn-helix domain-containing protein [Streptomyces hygroscopicus ATCC 53653] gi|302458712|gb|EFL21805.1| helix-turn-helix domain-containing protein [Streptomyces himastatinicus ATCC 53653] Length = 104 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 2/82 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISE 64 + + +G ++R R G+S + E ++ V YE+G V RL +++ Sbjct: 1 MSSEYAKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELAD 60 Query: 65 VLESPISFFFDVSPTVCSDISS 86 P+ + + Sbjct: 61 FYGVPVQELLPGTSPAGAAEPP 82 >gi|239927790|ref|ZP_04684743.1| DNA-binding protein SC5C722c [Streptomyces ghanaensis ATCC 14672] gi|291436132|ref|ZP_06575522.1| conserved DNA-binding protein c [Streptomyces ghanaensis ATCC 14672] gi|291339027|gb|EFE65983.1| conserved DNA-binding protein c [Streptomyces ghanaensis ATCC 14672] Length = 287 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 46/141 (32%), Gaps = 8/141 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P + +G+R+R R G+ +E+ L + V++ E + +Q Sbjct: 1 MSERRAAPTVGQVVLGRRLRELREAAGLGREEAARVLRVAPATVRRMETAEVALKIPYVQ 60 Query: 61 HISEVLESPISF---FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + S F ++ + + + + L I + Sbjct: 61 VLLTAYGVSGSEAAAFVELVEEANRPGWWQRYHDVLPEWFSLYVSLEGAARIIRSYEPH- 119 Query: 118 KIIELVRSIVSSEKKYRTIEE 138 V ++ +E+ R + E Sbjct: 120 ----FVPGLLQTEEYARAVLE 136 >gi|228926909|ref|ZP_04089975.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228832644|gb|EEM78215.1| Transcriptional regulator, MerR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 114 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 4/88 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G+ ++ R ++Q + G+ + ++ Q+ E N L I+ + + Sbjct: 5 GENLKKFRNNRSLTQAEFGDKVQLSRSQISNLETNFNEPDLDSLDRIASFFDISVDTLMG 64 Query: 74 --FDVSPTVCSDISSEENNVMDFISTPD 99 F S D+ E V + Sbjct: 65 RKFPKSERQLEDVLDEIQTVFAGLDESQ 92 >gi|226938551|ref|YP_002802313.1| hypothetical protein pCC3_03 [Leuconostoc citreum] gi|229587262|ref|YP_002860113.1| hypothetical protein pFMBL1_p3 [Leuconostoc citreum] gi|209165330|gb|ACI41226.1| hypothetical protein [Leuconostoc citreum] gi|225380896|gb|ACN88702.1| hypothetical protein [Leuconostoc citreum] Length = 204 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + R G++Q++L + +T + VQ+ E G V S L I+ L PIS FD Sbjct: 5 NVSQLRKQHGLTQQELADKSYVTIRTVQRLEAGE-DVSLSSLSAIANALSVPISGLFDDI 63 Query: 78 PTVCSDIS 85 + Sbjct: 64 EQKEKEQE 71 >gi|168181316|ref|ZP_02615980.1| prolyl aminopeptidase [Clostridium botulinum Bf] gi|237793769|ref|YP_002861321.1| hypothetical protein CLJ_B0515 [Clostridium botulinum Ba4 str. 657] gi|182675351|gb|EDT87312.1| prolyl aminopeptidase [Clostridium botulinum Bf] gi|229264073|gb|ACQ55106.1| conserved domain protein [Clostridium botulinum Ba4 str. 657] Length = 65 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 12/76 (15%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + NKK+ ++ R+ MSQE+L + +G+ Q + E G + Sbjct: 1 MKNKKM------------KIARIECDMSQEQLADAVGVARQTIGLIEAGKYNPSLNLCIS 48 Query: 62 ISEVLESPISFFFDVS 77 I +VL ++ F Sbjct: 49 ICKVLNKTLNDLFWEE 64 >gi|88811467|ref|ZP_01126722.1| putative gpC-like protein [Nitrococcus mobilis Nb-231] gi|88791356|gb|EAR22468.1| putative gpC-like protein [Nitrococcus mobilis Nb-231] Length = 91 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G++IR R G+S+ E +GI V + E+G N A+ L ++ + Sbjct: 1 MHIGEKIREIREAEGLSRASFAERIGIPKDTVMRIEQGRNDPRATILIAVTRQWPKYAYW 60 Query: 73 FFDVSPTVCSDISSEENN 90 + S Sbjct: 61 LMTGLSQPEAGHISPAIE 78 >gi|114563122|ref|YP_750635.1| helix-turn-helix domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114334415|gb|ABI71797.1| helix-turn-helix domain protein [Shewanella frigidimarina NCIMB 400] Length = 367 Score = 41.7 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R+ R G+S L +G++ ++KYE G +S L +++ L+ +FF Sbjct: 4 ERLERARKAAGLSMNALASEVGLSANAIKKYEHGTTMPSSSNLLKLAKALDVRSEYFF 61 >gi|297571746|ref|YP_003697520.1| XRE family transcriptional regulator [Arcanobacterium haemolyticum DSM 20595] gi|296932093|gb|ADH92901.1| transcriptional regulator, XRE family [Arcanobacterium haemolyticum DSM 20595] Length = 65 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 22/62 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + R G SQ+ L + LG++ Q + EKG ++ + I F Sbjct: 3 NNVSALRAEHGFSQQVLADKLGVSRQTIISIEKGRFDPSLPLAFAMAALFNLRIEDIFSP 62 Query: 77 SP 78 Sbjct: 63 DE 64 >gi|294509161|ref|YP_003566089.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] gi|294352085|gb|ADE72409.1| helix-turn-helix domain protein [Bacillus megaterium QM B1551] Length = 80 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 25/64 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R+ ++Q +L E +G+T Q + EKG I V+ + F + Sbjct: 15 NNVKTFRVQADLTQHQLAEKVGVTRQTISLIEKGKYNPTLKLCLEICYVVNRTLDEIFWI 74 Query: 77 SPTV 80 Sbjct: 75 DQEE 78 >gi|255525370|ref|ZP_05392309.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296187980|ref|ZP_06856372.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] gi|255510941|gb|EET87242.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|296047106|gb|EFG86548.1| helix-turn-helix domain-containing protein [Clostridium carboxidivorans P7] Length = 67 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R GM Q +L E +G+ + + E G I++ + + F+ Sbjct: 7 KVKEYRENAGMKQSELAELIGVRRETIVHLENGRYNPSLKMGMDIAKAFHTTVEELFEFE 66 Query: 78 P 78 Sbjct: 67 D 67 >gi|228910327|ref|ZP_04074143.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] gi|228849279|gb|EEM94117.1| Transcriptional regulator, Xre [Bacillus thuringiensis IBL 200] Length = 194 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 5 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVI 64 Query: 60 QHISEVLESPISFFF 74 I++ L P+S Sbjct: 65 WKITKGLSIPLSRLM 79 >gi|187935228|ref|YP_001886792.1| hypothetical protein CLL_A2604 [Clostridium botulinum B str. Eklund 17B] gi|187723381|gb|ACD24602.1| conserved domain protein [Clostridium botulinum B str. Eklund 17B] Length = 64 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R L +SQ +L E +G+T Q + E G I + L ++ F Sbjct: 5 KLKSARAALDLSQGQLAEIVGVTRQTIGMIEAGKYNPSLQLCIAICKALGKTLNDIFWEE 64 >gi|114569372|ref|YP_756052.1| XRE family transcriptional regulator [Maricaulis maris MCS10] gi|114339834|gb|ABI65114.1| transcriptional regulator, XRE family [Maricaulis maris MCS10] Length = 70 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 28/66 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R++ R G++Q +L E +G+T + + E V ++ L+ + Sbjct: 5 ALGNRLKEMRARHGLTQAQLAEAVGVTRKSINTVENRVFTPSTVLALKLAAALKVSVEEL 64 Query: 74 FDVSPT 79 F + Sbjct: 65 FYLDEE 70 >gi|147669788|ref|YP_001214606.1| XRE family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146270736|gb|ABQ17728.1| transcriptional regulator, XRE family [Dehalococcoides sp. BAV1] Length = 69 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R I ++QE+L + LGIT Q V E+G I+ + ++PI F Sbjct: 3 NKLKVLRAINSLTQEELADKLGITRQTVISIERGKYSPSLELAFKIASLFKTPIEEIF 60 >gi|86136992|ref|ZP_01055570.1| DNA-binding protein, putative [Roseobacter sp. MED193] gi|85826316|gb|EAQ46513.1| DNA-binding protein, putative [Roseobacter sp. MED193] Length = 204 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK IR R G++ E+ + I + K E R ++ + + LE F Sbjct: 24 LGKMIRDARKEKGLTLEEAAKAAAIGRSTLSKIENNQTRPSFEIIRRLMQTLELETPQLF 83 >gi|313207090|ref|YP_004046267.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|312446406|gb|ADQ82761.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|315022512|gb|EFT35539.1| putative prophage LambdaCh01, repressor protein [Riemerella anatipestifer RA-YM] gi|325335473|gb|ADZ11747.1| Helix-turn-helix type 3 [Riemerella anatipestifer RA-GD] Length = 198 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G I+ R I G+SQ+ + L +T + YE G L I++ L+ Sbjct: 5 GTNIKKIRQIKGLSQQAFADMLNLTRGIISSYEDGRAEPKVETLLRIAQFLDMKADDL 62 >gi|312277953|gb|ADQ62610.1| transcriptional regulator, XRE family [Streptococcus thermophilus ND03] Length = 65 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 23/60 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R M+Q L E +G T Q + E G + I + L+ + F Sbjct: 6 RLKAARAEHDMTQGDLAEAIGATRQTIGLIEAGKYNPSLALCIAICKTLDRTLDQLFWED 65 >gi|268610992|ref|ZP_06144719.1| putative transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 120 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPIS 71 + G++++ R+ MSQE+L + G+ + + +YE G +++ +SE ++ I Sbjct: 1 MEFGEKLKQIRIASHMSQEQLADITGLERKTIARYEMGETVPRYNKVYEKLSEFFKTSID 60 Query: 72 FFFDVSPTVCSDISS 86 F+ + +P ++ Sbjct: 61 FWKNDNPDDFQQTAA 75 >gi|269798478|ref|YP_003312378.1| XRE family transcriptional regulator [Veillonella parvula DSM 2008] gi|269095107|gb|ACZ25098.1| transcriptional regulator, XRE family [Veillonella parvula DSM 2008] Length = 153 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 5/119 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K ++ R+ +G SQ ++ + +GI+ + YE G L +S + DV Sbjct: 5 KNLKRARVRMGKSQIEVAKAVGISNAALSNYETGYREPDLDTLCALSRYYGLTLDELLDV 64 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRT 135 + E + + + ++ D + R + EL EK Sbjct: 65 NGEE-----HEPIYDLSPVLKNKYIAYKGDVFELKDSQKRALLRELDNLFTKFEKSKVE 118 >gi|192361723|ref|YP_001981703.1| Helix-turn-helix motif [Cellvibrio japonicus Ueda107] gi|190687888|gb|ACE85566.1| Helix-turn-helix motif [Cellvibrio japonicus Ueda107] Length = 107 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 1/82 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISF 72 +G +I+ R G + +KL E + + + E R A +L I++ L + F Sbjct: 4 ALGTKIKQLRDQRGYTLDKLAELSDSSKSYIWELENKAPPRPSADKLSKIADALGVTLGF 63 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 D + + + ++ Sbjct: 64 LIDEDSDQTQENAEDALFYRNY 85 >gi|187927559|ref|YP_001898046.1| XRE family transcriptional regulator [Ralstonia pickettii 12J] gi|187724449|gb|ACD25614.1| transcriptional regulator, XRE family [Ralstonia pickettii 12J] Length = 81 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R RR + +SQE L + I + K E+G V + I++ L S Sbjct: 17 IGAAVRARRKAIPLSQEALADLAEIDRSHMGKIERGERNVTMLNVLRIAQALGCQPSELL 76 Query: 75 DVSP 78 + Sbjct: 77 ADAG 80 >gi|116333094|ref|YP_794621.1| XRE family transcriptional regulator [Lactobacillus brevis ATCC 367] gi|116098441|gb|ABJ63590.1| Transcriptional regulator, xre family [Lactobacillus brevis ATCC 367] Length = 294 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 55/124 (44%), Gaps = 5/124 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R+ G +Q+++ + + ++ + E G + +GAS+L I + L F Sbjct: 4 IGCTLKQIRLAKGFTQKEIYQGI-VSRSFAIRLESGHHDLGASKLFLILDRLGVSAGEFR 62 Query: 75 ----DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 D P +D++S+ D + P L + + D+ ++ + +V+ + Sbjct: 63 FIQNDYQPDTATDLNSQIMLAYDQQNFPLLSHLAQRYQASDNPTEQRMAVMAATLLVAFD 122 Query: 131 KKYR 134 ++ Sbjct: 123 HEHV 126 >gi|41408954|ref|NP_961790.1| hypothetical protein MAP2856c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466084|ref|YP_882813.1| DNA-binding protein [Mycobacterium avium 104] gi|254776075|ref|ZP_05217591.1| DNA-binding protein [Mycobacterium avium subsp. avium ATCC 25291] gi|41397313|gb|AAS05173.1| hypothetical protein MAP_2856c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167371|gb|ABK68268.1| DNA-binding protein [Mycobacterium avium 104] Length = 108 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 31/82 (37%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +P V +G +R R G + ++ + ++ + + E+G + L I + L Sbjct: 1 MPPLVREVIGDVLREARTTQGRTLREVSDTARVSLGYLSEVERGRKEPSSELLNAICDAL 60 Query: 67 ESPISFFFDVSPTVCSDISSEE 88 + P+S + + Sbjct: 61 DVPLSSVLTDAGERMASEERAA 82 >gi|30021207|ref|NP_832838.1| ans operon repressor protein [Bacillus cereus ATCC 14579] gi|218232005|ref|YP_002367824.1| transcriptional regulator AnsR [Bacillus cereus B4264] gi|218898185|ref|YP_002446596.1| transcriptional regulator AnsR [Bacillus cereus G9842] gi|228969571|ref|ZP_04130373.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar sotto str. T04001] gi|229151303|ref|ZP_04279508.1| HTH-type transcriptional regulator ansR [Bacillus cereus m1550] gi|29896761|gb|AAP10039.1| Ans operon repressor protein [Bacillus cereus ATCC 14579] gi|218159962|gb|ACK59954.1| transcriptional regulator AnsR [Bacillus cereus B4264] gi|218540854|gb|ACK93248.1| transcriptional regulator AnsR [Bacillus cereus G9842] gi|228632148|gb|EEK88772.1| HTH-type transcriptional regulator ansR [Bacillus cereus m1550] gi|228790129|gb|EEM37909.1| HTH-type transcriptional regulator ansR [Bacillus thuringiensis serovar sotto str. T04001] Length = 125 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 4/122 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R S ++ + LGI YE G L I+++ ++ + + Sbjct: 3 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYILGR 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + + + L + ++ I VRS K Sbjct: 63 IEHSHQNKDVID---ITRLLNDPDPTLLIDGEALSTEEIID-FIAFVRSKRELSSKRIEN 118 Query: 137 EE 138 E Sbjct: 119 IE 120 >gi|21242911|ref|NP_642493.1| hypothetical protein XAC2176 [Xanthomonas axonopodis pv. citri str. 306] gi|21108408|gb|AAM37029.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 98 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 25/64 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +R R G+ QE L + + K E+G + + + I+ L ++ Sbjct: 26 GAAVRAARTEQGIGQETLANLAAVERSHMGKIERGEHLPTLAIIFKIARALGCSVAELMA 85 Query: 76 VSPT 79 + + Sbjct: 86 ATES 89 >gi|28377157|ref|NP_784049.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|300766897|ref|ZP_07076810.1| transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|28269988|emb|CAD62888.1| transcription regulator [Lactobacillus plantarum WCFS1] gi|300495435|gb|EFK30590.1| transcriptional regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 67 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R++ G SQ++L GIT Q + EKG ++ L + F V P Sbjct: 7 VKQYRLMAGFSQKELASKTGITRQTLSLIEKGTYNPSLKLCLNLCHALNQTLDTVFWVEP 66 Query: 79 T 79 + Sbjct: 67 S 67 >gi|134298860|ref|YP_001112356.1| helix-turn-helix domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051560|gb|ABO49531.1| helix-turn-helix domain protein [Desulfotomaculum reducens MI-1] Length = 134 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG RIR R+ G+ QE + GI V++YE I+E + + Sbjct: 13 VGGRIRYYRLAHGLLQEDVATKAGIDVCTVKRYENNQREESLEICNKIAEAIGIDPKLLY 72 Query: 75 DV 76 D Sbjct: 73 DE 74 Score = 40.2 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 26/50 (52%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 GKRI+ R+ L ++Q+ G+ LG+ + V +EK + +++ Sbjct: 84 GKRIKSSRIKLNLTQQDFGQLLGVHRKTVVCWEKARKKPLREHYLLLAKF 133 >gi|312141280|ref|YP_004008616.1| transcriptional regulator [Rhodococcus equi 103S] gi|325673887|ref|ZP_08153577.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|311890619|emb|CBH49937.1| putative transcriptional regulator [Rhodococcus equi 103S] gi|325555152|gb|EGD24824.1| XRE family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 215 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Query: 7 IPNPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 P VD+ + ++R R+ G+S + +GI+ + K E S L ++ Sbjct: 21 TPTGVDLERVIATQVRKLRLASGLSVGDMAAKVGISKAMLSKIENAQTSCSLSTLARLAA 80 Query: 65 VLESPISFFFDVSPTVCSDISSEE 88 L+ P++ F + + + E Sbjct: 81 GLDVPVTSLFRGADSTRDAVFVEA 104 >gi|294497869|ref|YP_003561569.1| putative transcriptional regulator SinR [Bacillus megaterium QM B1551] gi|294347806|gb|ADE68135.1| probable transcriptional regulator SinR [Bacillus megaterium QM B1551] Length = 111 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G++I+ R+ G S +L E I+ + EKG N L I+ L + I Sbjct: 1 MIGEKIKNLRLKKGYSITRLAEEANISKSYLSHLEKGLNNNPSLQMLDKIASSLHTTIDE 60 Query: 73 FFDVS 77 + Sbjct: 61 LIEGD 65 >gi|257870760|ref|ZP_05650413.1| predicted protein [Enterococcus gallinarum EG2] gi|257804924|gb|EEV33746.1| predicted protein [Enterococcus gallinarum EG2] Length = 252 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 6/116 (5%) Query: 4 NKKIPNPVDIN-VGKRIRLRRMILGMSQEKLGECLG----ITFQQVQKYEKGVNRVGASR 58 K++ NP + +G RIR R+ L + + GE L + + ++E+G++ R Sbjct: 10 KKRVFNPEEKEKIGTRIRNIRITLNKTMVEFGEMLSPDEPVAQSIISRWERGISVPNNDR 69 Query: 59 LQHISEVLESPISFFFDVSP-TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 L+ I+E+ + E + F S L+ I Sbjct: 70 LKKIAEIGNVSTYYLLTGEKIDYLYGGKKEVIDFSRFKSPSKLLKYIISVNSISSD 125 >gi|291299563|ref|YP_003510841.1| XRE family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568783|gb|ADD41748.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis DSM 44728] Length = 186 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 4/113 (3%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P P+ + +R R G+S ++ + GI + + E G G L +S L Sbjct: 5 PRPLIEVIAHALRRERDRAGLSLSEVAKRAGIAKSTLSQLEAGSGNPGVETLWALSVALN 64 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 P F + + + + R+ + Sbjct: 65 VP----FATLVEPSTSRVQVIRAGQGPTFAAEHADYVATVLSASPPRARRDLY 113 >gi|237739262|ref|ZP_04569743.1| transcriptional regulator [Fusobacterium sp. 2_1_31] gi|229422870|gb|EEO37917.1| transcriptional regulator [Fusobacterium sp. 2_1_31] Length = 106 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K P + + + K IR RR L ++QE+ + G++F ++++E + L I+ Sbjct: 19 NMKTPKEIQLEIAKNIRKRRKELKLTQEEFSKKSGVSFGSIKRFE-NTGEISLFSLIKIA 77 Query: 64 EVLESPISFF 73 VL F Sbjct: 78 IVLGCEDEFL 87 >gi|228930609|ref|ZP_04093590.1| transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228829005|gb|EEM74661.1| transcriptional regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 115 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 45/112 (40%), Gaps = 11/112 (9%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R L MSQ+ + + ++ V E G + + IS + + Sbjct: 5 IGIRVKEIRSSLAMSQQSFADAIEVSKGMVSLIESGKKKPSRETVSKISNLGNVSADYVM 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID--DVKVRQKIIELVR 124 +S N+ + S+ +L+ +I+ D ++ I+ +++ Sbjct: 65 GLSD---------YKNLNESQSSEVKTELHDMISKIEKLDEDKQKLILNMIK 107 >gi|229084745|ref|ZP_04217007.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-44] gi|228698561|gb|EEL51284.1| Transcriptional regulator, Xre [Bacillus cereus Rock3-44] Length = 404 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ R ++Q +L +T + + E G LQ+++ LE SF Sbjct: 4 LGEKIKALRKEKRLTQTEL-AGSELTKSMLSQIENGKATPSMKTLQYLASKLECEASFLL 62 Query: 75 DVSPTVCSDISS 86 + + + Sbjct: 63 EEDNEEVTKLIP 74 >gi|255654655|ref|ZP_05400064.1| putative transcriptional regulator [Clostridium difficile QCD-23m63] gi|296449430|ref|ZP_06891211.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296880634|ref|ZP_06904589.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] gi|296261776|gb|EFH08590.1| cro/CI family transcriptional regulator [Clostridium difficile NAP08] gi|296428347|gb|EFH14239.1| cro/CI family transcriptional regulator [Clostridium difficile NAP07] Length = 72 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 26/64 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R M+Q +L + +G+ + + E G I++V ++ + F+ Sbjct: 8 KIKSYREKNLMTQGELAKSVGVRRETIVHLENGRYNPSLKLAMDIAKVFDTTVEELFEFI 67 Query: 78 PTVC 81 Sbjct: 68 EEND 71 >gi|222087821|ref|YP_002546359.1| hypothetical protein Arad_4804 [Agrobacterium radiobacter K84] gi|221725269|gb|ACM28425.1| conserved hypothetical protein [Agrobacterium radiobacter K84] Length = 72 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 22/55 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+ R ++QE++ G + Q + E+G L +++ L Sbjct: 7 VGRNFARLRREKDLTQEEVEARSGFSQQYLSGLERGRRNPTVITLYELAQALGVS 61 >gi|170016425|ref|YP_001727344.1| helix-turn-helix motif-containing protein [Leuconostoc citreum KM20] gi|169803282|gb|ACA81900.1| Helix-turn-helix motif-containing protein [Leuconostoc citreum KM20] Length = 66 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 28/66 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R++ R ++QEKL + ++ + + E G IS++L I+ Sbjct: 1 MEIVNRVQHYRKQANLTQEKLAQLAHVSRKTINSLEHGHYTPSLLLALQISKILNLDINV 60 Query: 73 FFDVSP 78 F + Sbjct: 61 IFSIKE 66 >gi|270308504|ref|YP_003330562.1| DNA-binding protein [Dehalococcoides sp. VS] gi|270154396|gb|ACZ62234.1| DNA-binding protein [Dehalococcoides sp. VS] Length = 69 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R I ++QE+L + LGIT Q V E+G I+ + ++ I F Sbjct: 3 NKLKVLRAINNLTQEELADKLGITRQTVISIERGKYSPSLELAFKIAALFKTTIEEVFTY 62 Query: 77 SPTVCSD 83 + Sbjct: 63 NTEQEGQ 69 >gi|86741461|ref|YP_481861.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86568323|gb|ABD12132.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 250 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + ++P + VG+ +R RR+ G + + + ++ + + E+G+ + L Sbjct: 3 MTDDAEMP-LLRRLVGQALRRRRLAQGRTLRDVADAARVSTPYLSEIERGLKEASSEILA 61 Query: 61 HISEVLESPISFFFDV 76 + L +S D Sbjct: 62 AVCRALHIRLSDLLDE 77 >gi|150018305|ref|YP_001310559.1| XRE family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149904770|gb|ABR35603.1| transcriptional regulator, XRE family [Clostridium beijerinckii NCIMB 8052] Length = 68 Score = 41.7 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 26/64 (40%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R + +SQE+L + +G+T Q + E G I + L ++ F Sbjct: 5 KMKSARASMDLSQEQLADIVGVTRQTIGMIEAGKFNPSLQLCIAICKALGKTLNDIFWED 64 Query: 78 PTVC 81 Sbjct: 65 DDNE 68 >gi|310641622|ref|YP_003946380.1| transcriptional regulator, xre family [Paenibacillus polymyxa SC2] gi|309246572|gb|ADO56139.1| Transcriptional regulator, XRE family [Paenibacillus polymyxa SC2] Length = 364 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G++++ R+ G+S + + E I + ++ E G +V +E + Sbjct: 3 ELGQQLKEARLQKGLSLDDVQEMTKIRKRYLEAIETGDYKVLPGSFYVRAFIKTYAETVG 62 Query: 68 SPISFFFDVSPTVCSDISSEE 88 + + + E Sbjct: 63 LNPDELLEGHQSNVPEPEPEA 83 >gi|308068725|ref|YP_003870330.1| hypothetical protein [Paenibacillus polymyxa E681] gi|305858004|gb|ADM69792.1| Helix-turn-helix domain protein [Paenibacillus polymyxa E681] Length = 359 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 11/81 (13%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G++++ R+ G+S + + E I + ++ E G +V +E + Sbjct: 3 ELGQQLKEARLQKGLSLDDVQEMTKIRKRYLEAIETGDYKVLPGSFYVRAFIKTYAETVG 62 Query: 68 SPISFFFDVSPTVCSDISSEE 88 + + + E Sbjct: 63 LNPDELLEGHQSNVPEPEPEA 83 >gi|295694790|ref|YP_003588028.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] gi|295410392|gb|ADG04884.1| transcriptional regulator, XRE family [Bacillus tusciae DSM 2912] Length = 74 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RIR R + ++Q +L + + ++ + E+G L+ I E L Sbjct: 5 LGSRIRAFRKLKNLTQRELADRIHLSVAVLGAIERGAKTPSPHVLRAIGEALGIDEEELV 64 Query: 75 DV 76 Sbjct: 65 GG 66 >gi|291562582|emb|CBL41398.1| Helix-turn-helix [butyrate-producing bacterium SS3/4] Length = 266 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 40/92 (43%), Gaps = 5/92 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++ E+L E + ++ + YE K + + +++ + Sbjct: 5 IQERLKDLRVERGLTLEQLEEQVNLSKSALGSYEAKDFKDISHYAIIKLAKFYGVTADYL 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 +S T + ++ D + D ++L + Sbjct: 65 LGLSQTRNHPNA----DIADLRLSDDMIELLK 92 >gi|269956896|ref|YP_003326685.1| XRE family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305577|gb|ACZ31127.1| transcriptional regulator, XRE family [Xylanimonas cellulosilytica DSM 15894] Length = 252 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 34/98 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +RI R G+S +L + + V + E G Q I VL PI F Sbjct: 1 MDLAERISTLRRANGLSARQLAALVDVAPTTVTRIEAGSVSPSFDLAQEIMRVLGEPIGF 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 P + + + +T + +I Sbjct: 61 TGGADPDAIAAGRLSLDPTLQLEATEGVRAWWERWARI 98 >gi|254824677|ref|ZP_05229678.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] gi|255520244|ref|ZP_05387481.1| transcriptional regulator (phage-related) protein [Listeria monocytogenes FSL J1-175] gi|293593916|gb|EFG01677.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194] Length = 131 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 6/85 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEV 65 +PN + R+ L R G S+ + LG+ +E G+ + I+ + Sbjct: 1 MPN-----LSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATL 55 Query: 66 LESPISFFFDVSPTVCSDISSEENN 90 + + + S +N Sbjct: 56 YDVSVDYLLGQQSIPTYAPSELQNE 80 >gi|220928988|ref|YP_002505897.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220928999|ref|YP_002505908.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|220929010|ref|YP_002505919.1| XRE family transcriptional regulator [Clostridium cellulolyticum H10] gi|219999316|gb|ACL75917.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] gi|219999327|gb|ACL75928.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] gi|219999338|gb|ACL75939.1| transcriptional regulator, XRE family [Clostridium cellulolyticum H10] Length = 75 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 25/61 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ ++ R + +Q+ + E L I+ Q YE L +++ + Sbjct: 1 MDIGENLKYLRNVHNKTQQDIAEILKISRQAYTHYESNKREPDIKTLVKLADYYMVSLDM 60 Query: 73 F 73 Sbjct: 61 L 61 >gi|170756150|ref|YP_001780099.1| hypothetical protein CLD_0298 [Clostridium botulinum B1 str. Okra] gi|169121362|gb|ACA45198.1| conserved domain protein [Clostridium botulinum B1 str. Okra] Length = 65 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 30/61 (49%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K++++ R+ MSQE+L + +G+T Q + E G + I +VL ++ F Sbjct: 4 KKMKIARIECDMSQEQLADAIGVTRQTIGLIELGKYNPSLNLCIAICKVLNKTLNDLFWE 63 Query: 77 S 77 Sbjct: 64 E 64 >gi|116630429|ref|YP_819582.1| XRE family transcriptional regulator [Lactobacillus gasseri ATCC 33323] gi|116096011|gb|ABJ61163.1| transcriptional regulator [Lactobacillus gasseri ATCC 33323] Length = 288 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 1/101 (0%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G ++ R+ SQ K + +T K EK +++V A L + + + Sbjct: 5 INMMIGSLLKEYRLKQNKSQRKFIGSI-VTQSYYSKVEKNISQVTADNLIGLLQYNNISV 63 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 FF+ + + + + + I Sbjct: 64 QEFFNSFSQKSDNSYRQTKELENMMIEAYYTNNIEQMHNIK 104 >gi|167645954|ref|YP_001683617.1| XRE family transcriptional regulator [Caulobacter sp. K31] gi|167348384|gb|ABZ71119.1| transcriptional regulator, XRE family [Caulobacter sp. K31] Length = 69 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +R R G+ Q++L G+ + E G + L+ ++ L P + Sbjct: 7 VGANVRALREARGLPQDELAHLAGVHPTYLSGVETGKRNLSMKVLERLASALRVPETDL 65 >gi|47564254|ref|ZP_00235299.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|47558406|gb|EAL16729.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 125 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 4/122 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R S ++ + LGI YE G L I+++ ++ + + Sbjct: 3 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYILGR 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + + + L + ++ I VRS K Sbjct: 63 IEHSHQNKDVID---ITRLLNDPDPTLLIDGEALSTEEIID-FIAFVRSKRELSSKRIEN 118 Query: 137 EE 138 E Sbjct: 119 IE 120 >gi|312983955|ref|ZP_07791304.1| transcriptional regulator [Lactobacillus crispatus CTV-05] gi|310894632|gb|EFQ43705.1| transcriptional regulator [Lactobacillus crispatus CTV-05] Length = 273 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 48/112 (42%), Gaps = 8/112 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R+ LG++Q+++ + + I K E+G+ + A L I + Sbjct: 1 MTIGEALKQERIHLGLTQDEMIQGI-IHKSHYSKIERGIEGISAESLFKILFAHHIDVDQ 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 F + I + + D I +L F + K+ + + E+++ Sbjct: 60 FLE-------QIKDDFLSEEDLIELKLENKLKSAFNGSNKEKIEECLQEVMK 104 >gi|307326793|ref|ZP_07605985.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] gi|306887556|gb|EFN18550.1| transcriptional regulator, XRE family [Streptomyces violaceusniger Tu 4113] Length = 166 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 2/82 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISE 64 + + +G ++R R G+S + E ++ V YE+G V RL +++ Sbjct: 1 MSSEYAKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELAD 60 Query: 65 VLESPISFFFDVSPTVCSDISS 86 P+ + + Sbjct: 61 FYGVPVQELLPGTSPAGAAEPP 82 >gi|258516791|ref|YP_003193013.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257780496|gb|ACV64390.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 109 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 35/83 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++GKRI+ R ++ +L + I+ + + E ++ I + LE + Sbjct: 7 MDIGKRIKELRKTRKLTTRQLADLSDISQPVISRLENNERSADVELIKRICKALEITLQD 66 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 FF + E + V+D + Sbjct: 67 FFTTQEPEQEPLPPEAHRVIDKV 89 >gi|225377291|ref|ZP_03754512.1| hypothetical protein ROSEINA2194_02938 [Roseburia inulinivorans DSM 16841] gi|225210822|gb|EEG93176.1| hypothetical protein ROSEINA2194_02938 [Roseburia inulinivorans DSM 16841] Length = 118 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 38/91 (41%), Gaps = 2/91 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ +R G +QE L + + T + + +E + I +L+ + F Sbjct: 12 ALGREIKRKREAKGWTQEYLAQLVDRTPRSIMYFENRGQHPSLNTFYQIVTLLDISVDQF 71 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F P + S ++ +++ D +L Sbjct: 72 F--YPDRQNSESDCRQHIDRLLNSMDEKELT 100 >gi|148274004|ref|YP_001223565.1| Cro/CI family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831934|emb|CAN02905.1| putative transcriptional regulator, Cro/CI family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 68 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 23/61 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G+SQ+ L + LG++ Q + E G + + + F V Sbjct: 8 VRGLRTAAGLSQQSLADALGVSRQTINAIETGRYDPSLALAVKAARFFHRSVEEVFHVED 67 Query: 79 T 79 Sbjct: 68 D 68 >gi|75761940|ref|ZP_00741861.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218898416|ref|YP_002446827.1| DNA-binding protein [Bacillus cereus G9842] gi|74490571|gb|EAO53866.1| Transcriptional regulator, Cro/CI family [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218540574|gb|ACK92968.1| DNA-binding protein [Bacillus cereus G9842] Length = 67 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L M+QE L + +G+ + + EKG I++ L S I F Sbjct: 6 KIKEYRAKLNMTQEDLAKQVGVRRETISHLEKGKYNPSLQLAHDIAKALHSTIDEIFIFE 65 Query: 78 P 78 Sbjct: 66 D 66 >gi|330830146|ref|YP_004393098.1| phage transcriptional protein [Aeromonas veronii B565] gi|328805282|gb|AEB50481.1| Phage transcriptional protein [Aeromonas veronii B565] Length = 86 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 2/83 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N ++ + KR+R R L +S+ K + LGI ++ YE G +G Sbjct: 1 MTAQPTQINLLNHHAAKRLRQLREQLKLSRPKFADLLGIPPTTLKNYELGYREIGGGLFL 60 Query: 61 HISEVLES--PISFFFDVSPTVC 81 I+ E I + T Sbjct: 61 LIANHPELKRHIDWLLTGIATPE 83 >gi|322646512|gb|EFY43021.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] Length = 85 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 12/78 (15%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGA 56 M IP +R++ R G+SQ LG +G ++ YEKG + Sbjct: 1 MSEKNPIP--------ERLKEARCRAGLSQRSLGLLVGFDPASASSRMNHYEKGRHVPDI 52 Query: 57 SRLQHISEVLESPISFFF 74 L+ ++ L P+++FF Sbjct: 53 DTLRRMAAELNVPLNYFF 70 >gi|317470458|ref|ZP_07929846.1| hypothetical protein HMPREF1011_00193 [Anaerostipes sp. 3_2_56FAA] gi|316901973|gb|EFV23899.1| hypothetical protein HMPREF1011_00193 [Anaerostipes sp. 3_2_56FAA] Length = 216 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-IS 63 KK VG+R++ RR L ++ +LG+ +G+ +Q+YE + + + ++ Sbjct: 2 KKEITFTAKQVGERVKERRTELNLTMPELGKRIGVNKSTIQRYEADGVDPKRTMIINGLA 61 Query: 64 EVLESPISFFFDVSPTVCSDISS 86 E L + + +S D + Sbjct: 62 EALLTTPEWLTGLSEDKEYDSRT 84 >gi|304394918|ref|ZP_07376802.1| transcriptional regulator, XRE family [Pantoea sp. aB] gi|304357171|gb|EFM21534.1| transcriptional regulator, XRE family [Pantoea sp. aB] Length = 200 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 17/103 (16%), Positives = 36/103 (34%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 V+ V + I+ R +S + L GI+ + + EKG + L ++ L Sbjct: 17 SVNQAVSESIKRWRKSQKLSLDALSHRAGISKGMLVEIEKGAANPSIAILCKVAAALGVS 76 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 ++ +VS + + + + G + D Sbjct: 77 VADIVNVSHAPDAWLIENSEMPVLWQGEQGGTAQLLAGTRGPD 119 >gi|300172868|ref|YP_003772033.1| XRE family transcriptional regulator [Leuconostoc gasicomitatum LMG 18811] gi|299887246|emb|CBL91214.1| Transcriptional regulator, XRE family,putative [Leuconostoc gasicomitatum LMG 18811] Length = 69 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 25/66 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ R M+Q +L + L +T Q + EKG + +I+ + I F Sbjct: 3 NRIQELRKSRHMTQAELADKLEVTRQTIISLEKGKYNASLTLAHNIASFFQLTIETVFIF 62 Query: 77 SPTVCS 82 Sbjct: 63 EEDKTD 68 >gi|255036397|ref|YP_003087018.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] gi|254949153|gb|ACT93853.1| transcriptional regulator, XRE family [Dyadobacter fermentans DSM 18053] Length = 496 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 43/106 (40%), Gaps = 6/106 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G +++ R+ GMS +L + G++ + + EKG + ++ ++ +E Sbjct: 13 GLKLKQLRLDKGMSLSELSQKSGLSISYINEIEKGKKYPKSDKILALASAIEVDYDTLVS 72 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + +S + D +S+ +L ID + + + + Sbjct: 73 L------KLSKRLEPISDLLSSNVLTELPLELFGIDPANLLEILSD 112 >gi|283796477|ref|ZP_06345630.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075889|gb|EFE13253.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 266 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 11/78 (14%), Positives = 31/78 (39%), Gaps = 1/78 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++ E+L E ++ + YE + + L +++ + Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEAEDFKDISHYALIKLAKFYGVTADYL 64 Query: 74 FDVSPTVCSDISSEENNV 91 +S T + + Sbjct: 65 LGLSQTKNHPNADLADLH 82 >gi|167465684|ref|ZP_02330773.1| Predicted transcriptional regulator with an addtional conserved domain [Paenibacillus larvae subsp. larvae BRL-230010] Length = 355 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + R+ R G + L + I+ Q + KYEK L+ +S+ L Sbjct: 5 NRFSKFIPDRLIEAREARGFTLTDLANIVEISHQAISKYEKEKATPNHDTLEKLSDALHV 64 Query: 69 PISFFFDVSPTVCSDIS 85 P+++F+ P + Sbjct: 65 PVTYFYKSYPKKVDGVI 81 >gi|163761211|ref|ZP_02168287.1| transcriptional regulator, XRE family with cupin sensor [Hoeflea phototrophica DFL-43] gi|162281550|gb|EDQ31845.1| transcriptional regulator, XRE family with cupin sensor [Hoeflea phototrophica DFL-43] Length = 203 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 29/87 (33%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR R G++ + L + GI+ + + E+ L ++ L + F Sbjct: 23 GERIREMRHKAGLTLQTLADQSGISVGFLSQVERDKATPSLGTLASVAAALGVDVDVFIS 82 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQ 102 S E + + Sbjct: 83 TPKPADSVTREGERPSFVLADSSLQYE 109 >gi|88803785|ref|ZP_01119308.1| transcription regulator [Polaribacter irgensii 23-P] gi|88780313|gb|EAR11495.1| transcription regulator [Polaribacter irgensii 23-P] Length = 257 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K I+ R + ++QE L E L +T ++ YE+ + L S PI Sbjct: 6 KNIKHLRTLKKLTQESLAEELSVTRSRISSYEENRSSPTIDFLIDFSAYFRIPIDIIIKN 65 Query: 77 SPTVCSDIS 85 + D+S Sbjct: 66 DLSKAKDVS 74 >gi|332530356|ref|ZP_08406301.1| transcriptional regulator, XRE family protein [Hylemonella gracilis ATCC 19624] gi|332040167|gb|EGI76548.1| transcriptional regulator, XRE family protein [Hylemonella gracilis ATCC 19624] Length = 286 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 47/126 (37%), Gaps = 4/126 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + P P +G+++R R +SQ L ++ + + E G + G + Sbjct: 1 MDTRTYPAP--PAIGEQLRTWRERRHLSQLALAVQAEVSSRHLSFIETGRAQPGRELILR 58 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMD--FISTPDGLQLNRYFIQIDDVKVRQKI 119 +++ L+ P+ D+ + N D F S + L + + + Sbjct: 59 LADELDIPLRERNDLLIAAGFAPVFQARNFEDAAFDSLRAIVDLTLERHKPFPAYLIDRH 118 Query: 120 IELVRS 125 ++RS Sbjct: 119 WNIIRS 124 >gi|330941285|gb|EGH44146.1| hypothetical protein PSYPI_17842 [Pseudomonas syringae pv. pisi str. 1704B] Length = 77 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R RR+ LG+SQE L E G+ V E+ ++ I++ L Sbjct: 16 ANVRRRRLELGLSQEALAERAGVHRTYVGMLERSEKNCTIYNIERIAQALNVDPELLL 73 >gi|327393597|dbj|BAK11019.1| putative HTH-type transcriptional regulatory protein [Pantoea ananatis AJ13355] Length = 192 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 15/94 (15%), Positives = 38/94 (40%), Gaps = 1/94 (1%) Query: 1 MVGN-KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M+ + + +++ +G +++ R S L E G++ + K E+G + A+ L Sbjct: 1 MLDDLSSKEDDLNVRIGLKVKFERERRSWSLTDLAENSGVSRAMIHKIERGESSPTATLL 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 +S + +S + + E+ + Sbjct: 61 ARLSGAFDMSMSQLLAETEARTGMLVRYEDQAVW 94 >gi|307294734|ref|ZP_07574576.1| helix-turn-helix domain protein [Sphingobium chlorophenolicum L-1] gi|306879208|gb|EFN10426.1| helix-turn-helix domain protein [Sphingobium chlorophenolicum L-1] Length = 187 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 18 RIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RIR R G++ E++G T Q + + E G V + L I++ L S Sbjct: 4 RIREVRKAKGLTLEQVGALCVPPTTAQTIGRLETGTRTVSVNWLNRIADALGVSSSEL 61 >gi|294790649|ref|ZP_06755807.1| BamHI control element [Scardovia inopinata F0304] gi|294458546|gb|EFG26899.1| BamHI control element [Scardovia inopinata F0304] Length = 83 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 3/74 (4%) Query: 7 IPNPVD---INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 + N + + +G+ IR R +SQE L + V + E+G V ++ + Sbjct: 1 MTNDIRSKRLALGQAIRYYREEKKLSQEDLALAADMDRSYVGRVERGEKSVSLDKIWQLC 60 Query: 64 EVLESPISFFFDVS 77 L F ++ Sbjct: 61 IALGITPVELFTLA 74 >gi|291526787|emb|CBK92373.1| Helix-turn-helix [Eubacterium rectale M104/1] Length = 115 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 4/116 (3%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + +K D G RI RR ++G+SQ++L +GI Q + E G + L + Sbjct: 1 MSSKAQTREKDYERGLRIADRRKVMGLSQDELAHRVGIGRQALSAIENGGDF-KTQTLDN 59 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENN---VMDFISTPDGLQLNRYFIQIDDVK 114 ++ VL + F S++ SE + MD + L + + + K Sbjct: 60 LAIVLGVSVDFIMYGKNEENSELLSEAMDVLSDMDELQVRQCLAMIKAMKSVSVEK 115 >gi|238917699|ref|YP_002931216.1| hypothetical protein EUBELI_01779 [Eubacterium eligens ATCC 27750] gi|238873059|gb|ACR72769.1| Hypothetical protein EUBELI_01779 [Eubacterium eligens ATCC 27750] Length = 213 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 30/87 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG IR R+ M+Q++L + G+ ++ YE G + L +I+ L Sbjct: 9 VGYLIRNFRIASDMTQKELADKCGLNESTIRNYELGNRYPDEATLLNIANNLGVSFYALS 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGL 101 D ++ L Sbjct: 69 DPDVANIFSALHVLFDIEWAYGLRPTL 95 >gi|238917584|ref|YP_002931101.1| putative transcriptional regulator [Eubacterium eligens ATCC 27750] gi|238872944|gb|ACR72654.1| putative transcriptional regulator [Eubacterium eligens ATCC 27750] Length = 97 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + V IR R G+ Q L +G + + V + E+G + A + IS+ + Sbjct: 30 IFMAVTNNIREIREQRGIYQNDLAAAIGYSTKTVDRIERGDSTPSAEFMLQISKYFNMLV 89 Query: 71 SFFFDVSP 78 F V Sbjct: 90 EDVFHVED 97 >gi|229035317|ref|ZP_04189225.1| HTH-type transcriptional regulator ansR [Bacillus cereus AH1271] gi|228727997|gb|EEL79065.1| HTH-type transcriptional regulator ansR [Bacillus cereus AH1271] Length = 125 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 4/122 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R S ++ + LGI YE G L I+++ ++ + + Sbjct: 3 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYILGR 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + + + L + ++ I VRS K Sbjct: 63 IEHSHQNKDVID---ITSLLKDPDPTLLIDGEALSTEEIID-FIAFVRSKRELNSKRIEN 118 Query: 137 EE 138 E Sbjct: 119 IE 120 >gi|227329669|ref|ZP_03833693.1| putative transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 98 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGASRLQHISEVL 66 + I +GKR+++ R+ G++Q +LG G+ ++ YE V+ + + VL Sbjct: 1 MSIMIGKRLKIARVNAGLTQTELGVRAGLDEESASSRISSYENEVHAPDFGLVCKFAAVL 60 Query: 67 ESPISFFFDVSPTVCS 82 + P ++F+ V + + Sbjct: 61 DIPEAYFYAVDDDLAT 76 >gi|254831673|ref|ZP_05236328.1| transcription regulator [Listeria monocytogenes 10403S] Length = 423 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 14/99 (14%), Positives = 38/99 (38%), Gaps = 1/99 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R ++ + + + + I+ + E G+ L HI+ L+ P Sbjct: 4 IGLRIKNIRKEKKLTLKDVAQGI-ISVPYLANIENGIKVASLETLIHIARRLDIPEEILL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 + E + + + + + ++ ++I + Sbjct: 63 MSEDEENRALLKELDEIFELLVCSNPKEIESRLMKIAEN 101 >gi|37650510|emb|CAE47444.1| PlcR protein [Bacillus thuringiensis serovar tohokuensis] Length = 285 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DVSPTVCSDISSEENNVMDFI 95 +V + + + + + + Sbjct: 65 EVLIYSDIERNKQLKDQIIML 85 >gi|22855027|ref|NP_690787.1| immunity repressor [Bacillus phage phi105] gi|133375|sp|P06153|RPC_BPPH1 RecName: Full=Immunity repressor protein gi|1196714|gb|AAA88396.1| unknown protein [Bacillus phage phi105] gi|4126640|dbj|BAA36660.1| immunity repressor [Bacteriophage phi-105] gi|295002743|gb|ADF59164.1| immunity repressor [Bacillus phage phi105] gi|224753|prf||1112178A ORF 1 Length = 144 Score = 41.7 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 48/132 (36%), Gaps = 5/132 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+RI+ R ++Q +L E ++ + E+ S L+ ++ L +S Sbjct: 1 MTVGQRIKAIRKERKLTQVQLAEKANLSRSYLADIERDRYNPSLSTLEAVAGALGIQVSA 60 Query: 73 FFDV-----SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 + E++ L+ + + ++ + L+ ++ Sbjct: 61 IVGEETLIKEEQAEYNSKEEKDIAKRMEEIRKDLEKSDGLSFSGEPMSQEAVESLMEAME 120 Query: 128 SSEKKYRTIEEE 139 ++ + I ++ Sbjct: 121 HIVRQTQRINKK 132 >gi|298290472|ref|YP_003692411.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296926983|gb|ADH87792.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 229 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+++R R L ++ L GI+ + K E G+ + LQ IS L PIS Sbjct: 45 ALGQQVRAVRRELELTVSDLASAAGISVGMLSKIENGLISPSLATLQAISSALNVPISTL 104 Query: 74 FDVSPTVCS 82 F Sbjct: 105 FTTFEEKRD 113 >gi|312109734|ref|YP_003988050.1| hypothetical protein GY4MC1_0611 [Geobacillus sp. Y4.1MC1] gi|311214835|gb|ADP73439.1| protein of unknown function DUF955 [Geobacillus sp. Y4.1MC1] Length = 388 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 34/63 (53%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R+ GM+ +L + +G+T Q V ++E+G + ++ VL+ P FF+ Sbjct: 13 RRLKAARVFRGMTITELADKIGVTRQAVSQFEQGKTPPSLESIFKLTNVLQFPRDFFYAE 72 Query: 77 SPT 79 + Sbjct: 73 DKS 75 >gi|239815237|ref|YP_002944147.1| XRE family transcriptional regulator [Variovorax paradoxus S110] gi|239801814|gb|ACS18881.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 190 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 30/70 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G ++R RM +S +L + GI+ + + E+G+ L+ ++ L P S Sbjct: 7 VRIGTQVRALRMAADVSGGELAKTSGISASMLSRIERGLVSPSVETLERLANGLGVPASR 66 Query: 73 FFDVSPTVCS 82 F Sbjct: 67 LFGDQARRTD 76 >gi|238027937|ref|YP_002912168.1| hypothetical protein bglu_1g23820 [Burkholderia glumae BGR1] gi|237877131|gb|ACR29464.1| Hypothetical protein bglu_1g23820 [Burkholderia glumae BGR1] Length = 125 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 42/104 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R+ R G +Q L + LG+ + V + E G + RL +VL+ PI Sbjct: 17 IGQRLAAVRRARGWTQAVLADKLGLEKESVSRLESGKVAISIERLVMFCDVLDVPIEEIL 76 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + +D + + ++ + + + + ++K Sbjct: 77 TSASVHPTDEARTLIASLKGLAPAQRAIVLKSAHHLASLLKKEK 120 >gi|229495100|ref|ZP_04388846.1| DNA-binding protein [Rhodococcus erythropolis SK121] gi|229318031|gb|EEN83906.1| DNA-binding protein [Rhodococcus erythropolis SK121] Length = 196 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS- 77 +R R G++ E L E G+T + K E+G++ + I+ VL++ + F S Sbjct: 5 LRTHRRRAGLTLEGLAEQTGLTKSYLSKVERGISTPSIAVALKIARVLDADVGQLFSDSM 64 Query: 78 PTVCSDISSEENNVMDFIST 97 I ++ V+D ++ Sbjct: 65 EGNAMTIVRAKDRVIDPANS 84 >gi|229080286|ref|ZP_04212811.1| HTH-type transcriptional regulator ansR [Bacillus cereus Rock4-2] gi|228702955|gb|EEL55416.1| HTH-type transcriptional regulator ansR [Bacillus cereus Rock4-2] Length = 128 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 4/122 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R S ++ + LGI YE G L I+++ ++ + + Sbjct: 6 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYILGR 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + + + L + ++ I VRS K Sbjct: 66 IEHSHQNKDVID---ITRLLNDPDATLLVDGEALSTEEIID-FIAFVRSKRELSSKRIEN 121 Query: 137 EE 138 E Sbjct: 122 IE 123 >gi|166032267|ref|ZP_02235096.1| hypothetical protein DORFOR_01970 [Dorea formicigenerans ATCC 27755] gi|166027990|gb|EDR46747.1| hypothetical protein DORFOR_01970 [Dorea formicigenerans ATCC 27755] Length = 80 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 4/76 (5%) Query: 9 NPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR--VGASRLQHISE 64 N D+ +G I+ R ++Q +L E I+ + K E + S L I+ Sbjct: 5 NDTDLYRVIGANIKHYREQAKLTQVQLAERAKISISYLSKIEAAGCDKSLSISVLNQIAN 64 Query: 65 VLESPISFFFDVSPTV 80 VL I+ FF Sbjct: 65 VLSVDINEFFKEVSES 80 >gi|157693836|ref|YP_001488298.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|157682594|gb|ABV63738.1| transcriptional regulator [Bacillus pumilus SAFR-032] Length = 156 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISF 72 +GK IR+ R G S ++L E ++ + K E+GV+ L+ +S LE + Sbjct: 1 MIGKVIRIYRKRKGYSIQQLAEDAHVSKSYLSKIERGVHRNPSVQFLKKVSSSLEIDLQE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFI 95 FD + D S E+ + I Sbjct: 61 LFDAETMMFHDAESGEHEWREHI 83 >gi|118443353|ref|YP_878274.1| transcriptional regulator [Clostridium novyi NT] gi|118133809|gb|ABK60853.1| putative transcriptional regulator [Clostridium novyi NT] Length = 113 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ ++ +L E GI + K E G ++ A LQ +++ L ++ FFD Sbjct: 5 EKLKQLRISRNITTYELSELTGIPQSTISKMENGKRKIEAESLQKLADALNISVNEFFDS 64 Query: 77 S-PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 S S+ E+ ++ L+ ++I + Sbjct: 65 SFKDSTSESFDEDIRRIERARNKMPLKDKEKMMKILEA 102 >gi|108758699|ref|YP_628542.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] gi|108462579|gb|ABF87764.1| putative transcriptional regulator [Myxococcus xanthus DK 1622] Length = 272 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPIS 71 +++G +RL R G+S L +G++ + + E GV+ RL I+ L P S Sbjct: 1 MHLGATLRLLRTDAGLSLRDLARRIGVSSAYLSRVENGVDAPPTPERLSAIARELRVPSS 60 Query: 72 FFFDVSPTVCSDISSEENN 90 DV+ + +++ Sbjct: 61 LLMDVANRMSPSVAAYLEE 79 >gi|81330301|ref|YP_398693.1| hypothetical protein pHTbeta_51 [Enterococcus faecium] gi|80751063|dbj|BAE48135.1| hypothetical protein [Enterococcus faecium] Length = 135 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEV 65 PNP GKRI+ R+ G + E+LG + + +E+G N +L+ +S + Sbjct: 2 KPNP--SEAGKRIKQLRLSCGFTMEELGRKIDNSPRATISNWERGTNLPNPQKLKLLSTI 59 Query: 66 LESPISFF 73 S I + Sbjct: 60 TNSTIDWI 67 >gi|47564376|ref|ZP_00235421.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] gi|47558528|gb|EAL16851.1| transcriptional regulator, Cro/CI family [Bacillus cereus G9241] Length = 69 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +I + R G +QE+L +G++ Q + EK I+ V E ++ FD Sbjct: 7 NKIVVCRAEKGWTQEELATRVGVSRQTIATLEKNKYNPSLILAFKIANVFEKSLTDVFDY 66 Query: 77 SPT 79 Sbjct: 67 LEE 69 >gi|307269877|ref|ZP_07551204.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX4248] gi|306513784|gb|EFM82389.1| toxin-antitoxin system, antitoxin component, Xre family [Enterococcus faecalis TX4248] Length = 128 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 23/57 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R++ R ++Q++L + L + K E G + + L ++ + Sbjct: 8 ERLKQLRENKELTQKELADLLHMDRSVYNKIESGARPIRDNELIQFADFYNVSTDYL 64 >gi|296125780|ref|YP_003633032.1| XRE family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296017596|gb|ADG70833.1| transcriptional regulator, XRE family [Brachyspira murdochii DSM 12563] Length = 139 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK IR R + ++ E GI+ + +Q E G + + L I++ L PI+ F Sbjct: 39 VGKNIRAIRKSQMKTISEIAEVSGISSKYLQSVEVGKRNISITNLNKIAKTLNVPIAVLF 98 Query: 75 DVS 77 Sbjct: 99 SYD 101 >gi|253991778|ref|YP_003043134.1| phage repressor protein c [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638553|emb|CAR67174.1| hypothetical phage repressor protein c [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783228|emb|CAQ86393.1| hypothetical phage repressor protein c [Photorhabdus asymbiotica] Length = 97 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP--I 70 +N+G++I+ R +SQ + E + + ++K E G N G + L +++ + Sbjct: 1 MNIGEKIKAMRNAENLSQSQFCEIMQLPLSTLKKLEGGHNEPGWNTLSKLTQHPKFKKYT 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFIST 97 + + + S + + Sbjct: 61 LWLMTDTTAPEAGQVSPAISHNGPENE 87 >gi|92113335|ref|YP_573263.1| XRE family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91796425|gb|ABE58564.1| transcriptional regulator, XRE family [Chromohalobacter salexigens DSM 3043] Length = 205 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G RI+ RM G+S+ L +G++ + +E G + +G RL ++E LE P+ Sbjct: 4 LGPRIKQLRMEAGLSKAALARRVGVSDVTISYWESGTIKQIGHERLLSLAEALECPLERL 63 Query: 74 FDVSPTVCSDISSEENN 90 D + + E + Sbjct: 64 LDNNTPTHHEFEGELAH 80 >gi|319650734|ref|ZP_08004873.1| hypothetical protein HMPREF1013_01478 [Bacillus sp. 2_A_57_CT2] gi|317397591|gb|EFV78290.1| hypothetical protein HMPREF1013_01478 [Bacillus sp. 2_A_57_CT2] Length = 68 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 31/64 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++R++R+ ++Q++ + +G++ + +E A R++ ++ + + Sbjct: 4 AIGDKLRMKRLTRNLTQKEAAKIIGVSVYMISAWENDRYFPSAVRMEQLAALYDISAEEL 63 Query: 74 FDVS 77 D Sbjct: 64 LDYD 67 >gi|306821222|ref|ZP_07454836.1| cro/CI family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550734|gb|EFM38711.1| cro/CI family transcriptional regulator [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 67 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 21/62 (33%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R Q +L + + + + E G I++V + F+ + Sbjct: 6 KIKEYREKFKYKQSELADMVNARRETIVHLESGKYNPSLKLAMDIAKVFGVSVEELFEFT 65 Query: 78 PT 79 Sbjct: 66 ND 67 >gi|317055345|ref|YP_004103812.1| helix-turn-helix domain-containing protein [Ruminococcus albus 7] gi|315447614|gb|ADU21178.1| helix-turn-helix domain protein [Ruminococcus albus 7] Length = 68 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 23/64 (35%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R ++Q +L L + + +YE G L ++ I + + + Sbjct: 2 RLKELRKKKHITQLRLAMDLNMNQNSISRYETGEREADYKTLILFADYFGVSIDYLLERT 61 Query: 78 PTVC 81 Sbjct: 62 DDPT 65 >gi|262066507|ref|ZP_06026119.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium periodonticum ATCC 33693] gi|291379782|gb|EFE87300.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium periodonticum ATCC 33693] Length = 94 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 2/90 (2%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N K P + + + K IR RR L ++QE+ + G++F ++++E + L I+ Sbjct: 7 NMKTPKEIQLEIAKNIRKRRKELKLTQEEFSKKSGVSFGSIKRFE-NTGEISLFSLIKIA 65 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMD 93 VL F ++ E N D Sbjct: 66 IVLGCE-DEFLNLFQQKQYSSIEEIINEQD 94 >gi|326203720|ref|ZP_08193583.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325986160|gb|EGD46993.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 184 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 27/68 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + ++ R +S + + + G++ + + E+ S + I+ L+ S Sbjct: 8 ISENLKRVREEKKLSLDTVAKLSGVSKSMLGQIERCEVNPTVSTMWKIANGLKVSFSQLV 67 Query: 75 DVSPTVCS 82 + + T Sbjct: 68 NHTETNVE 75 >gi|295401783|ref|ZP_06811748.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|312112235|ref|YP_003990551.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] gi|294976150|gb|EFG51763.1| transcriptional regulator, XRE family [Geobacillus thermoglucosidasius C56-YS93] gi|311217336|gb|ADP75940.1| helix-turn-helix domain protein [Geobacillus sp. Y4.1MC1] Length = 97 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 29/55 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +I+ RR L M+Q++L + +G+ + + E G+ L IS+ L +P Sbjct: 26 IAAQIKTRRKQLNMTQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80 >gi|251777923|ref|ZP_04820843.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082238|gb|EES48128.1| helix-turn-helix domain protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 141 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 1/78 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISFF 73 +G++++ R+ ++Q+KL E +G K + + + ++ +F Sbjct: 18 IGEKLKYYRLKNNLTQDKLAEIIGYYAGSCIKDVELNRKLPRRNFSKKLASYFNLNTKYF 77 Query: 74 FDVSPTVCSDISSEENNV 91 FD +I N Sbjct: 78 FDNYLEDTDNIKDLLKNY 95 >gi|300776082|ref|ZP_07085941.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300505215|gb|EFK36354.1| XRE family transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 135 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 60/142 (42%), Gaps = 11/142 (7%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQ 60 + NKK I+ G+ I+ R +LG+ QE L + Q+ + + L+ Sbjct: 1 MQNKK------IHQGRNIKRFREMLGIKQEALAFDLGEDWNQKKISLLEQKETIEEDILE 54 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV-KVRQKI 119 I ++L+ P+ ++ +I + + + +G+ N F ID V ++ ++ Sbjct: 55 RICQILKVPVEAIENMDEEQAVNIIANTFDNGSIL---NGINHNPSFHPIDKVLQLHEEK 111 Query: 120 IELVRSIVSSEKKYRTIEEECM 141 I L ++ + + E+ + Sbjct: 112 IALYERMLKEKDEMMARLEQLI 133 >gi|225571494|ref|ZP_03780490.1| hypothetical protein CLOHYLEM_07592 [Clostridium hylemonae DSM 15053] gi|225159571|gb|EEG72190.1| hypothetical protein CLOHYLEM_07592 [Clostridium hylemonae DSM 15053] Length = 73 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 26/70 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++L R+ + MSQE L + +T Q + E G I L ++ F Sbjct: 4 KKMKLARINMDMSQEDLARHVDVTRQTIGMIEAGKFNPSLRLCLAICRALGVTLNDLFWE 63 Query: 77 SPTVCSDISS 86 S Sbjct: 64 EDEEYEKNSR 73 >gi|194017128|ref|ZP_03055740.1| HTH-type transcriptional regulator PuuR [Bacillus pumilus ATCC 7061] gi|194010996|gb|EDW20566.1| HTH-type transcriptional regulator PuuR [Bacillus pumilus ATCC 7061] Length = 67 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%) Query: 11 VDI-NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +D+ + + ++ +R G+SQE E LG T + + E G L ISE + Sbjct: 2 IDLNELARMLKQKRKESGLSQEDFAEKLGFTGSYISRLENGKVSPTFKSLVQISEHVGIK 61 Query: 70 ISFFF 74 FF Sbjct: 62 AKLFF 66 >gi|110633833|ref|YP_674041.1| XRE family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284817|gb|ABG62876.1| transcriptional regulator, XRE family [Chelativorans sp. BNC1] Length = 198 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 32/66 (48%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R G++ L LG + + + E+G++ + L+ ++ + P+SFF + Sbjct: 24 IRRLRKARGLTLAGLASQLGRSVGWLSQVERGISLPSVADLRALANHFKVPVSFFLTPAA 83 Query: 79 TVCSDI 84 + ++ Sbjct: 84 SDEKEL 89 >gi|15807558|ref|NP_296294.1| transcriptional regulator [Deinococcus radiodurans R1] gi|6460399|gb|AAF12112.1|AE002086_4 transcriptional regulator, HTH_3 family [Deinococcus radiodurans R1] Length = 131 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 22/62 (35%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R G+ + + E I+ + E+G LQ ++ + + Sbjct: 7 ERLRELRSERGLRLKDVAEVADISVPYLSDLERGRTNPSLETLQTLAGAYNITVHDLLEG 66 Query: 77 SP 78 Sbjct: 67 VE 68 >gi|255973582|ref|ZP_05424168.1| CylR2 [Enterococcus faecalis T2] gi|256959429|ref|ZP_05563600.1| CylR2 [Enterococcus faecalis DS5] gi|256960245|ref|ZP_05564416.1| CylR2 [Enterococcus faecalis Merz96] gi|257080295|ref|ZP_05574656.1| CylR2 [Enterococcus faecalis JH1] gi|257423074|ref|ZP_05600064.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|307277414|ref|ZP_07558507.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|307285036|ref|ZP_07565186.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|307292300|ref|ZP_07572161.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|312904701|ref|ZP_07763852.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|55670390|pdb|1UTX|A Chain A, Regulation Of Cytolysin Expression By Enterococcus Faecalis: Role Of Cylr2 gi|55670391|pdb|1UTX|B Chain B, Regulation Of Cytolysin Expression By Enterococcus Faecalis: Role Of Cylr2 gi|146386808|pdb|2GZU|A Chain A, High-Resolution Structure Determination Of The Cylr2 Homodimer Using Intermonomer Distances From Paramagnetic Relaxation Enhancement And Nmr Dipolar Couplings gi|146386809|pdb|2GZU|B Chain B, High-Resolution Structure Determination Of The Cylr2 Homodimer Using Intermonomer Distances From Paramagnetic Relaxation Enhancement And Nmr Dipolar Couplings gi|322812210|pdb|2XI8|A Chain A, High Resolution Structure Of Native Cylr2 gi|322812211|pdb|2XI8|B Chain B, High Resolution Structure Of Native Cylr2 gi|18139790|gb|AAL60140.1|AF394225_2 CylR2 [Enterococcus faecalis] gi|18104290|gb|AAL59476.1| putative transcription regulator [Enterococcus faecalis] gi|255966454|gb|EET97076.1| CylR2 [Enterococcus faecalis T2] gi|256949925|gb|EEU66557.1| CylR2 [Enterococcus faecalis DS5] gi|256950741|gb|EEU67373.1| CylR2 [Enterococcus faecalis Merz96] gi|256988325|gb|EEU75627.1| CylR2 [Enterococcus faecalis JH1] gi|257164898|gb|EEU94858.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|306496655|gb|EFM66211.1| helix-turn-helix protein [Enterococcus faecalis TX0411] gi|306502937|gb|EFM72197.1| helix-turn-helix protein [Enterococcus faecalis TX0860] gi|306505903|gb|EFM75080.1| helix-turn-helix protein [Enterococcus faecalis TX2134] gi|310631956|gb|EFQ15239.1| helix-turn-helix protein [Enterococcus faecalis TX0635] gi|315163478|gb|EFU07495.1| helix-turn-helix protein [Enterococcus faecalis TX1302] gi|329569606|gb|EGG51374.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length = 66 Score = 41.3 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++L R +SQ +L L ++ Q + EK I+ L +P+ F Sbjct: 4 NNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQW 63 Query: 77 SPT 79 P Sbjct: 64 QPE 66 >gi|331086470|ref|ZP_08335549.1| hypothetical protein HMPREF0987_01852 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410528|gb|EGG89956.1| hypothetical protein HMPREF0987_01852 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 143 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 36/81 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++IR R+ G +Q++L G++ ++ YE G + +L+ I+ L+ Sbjct: 1 MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISPYA 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 D + + + D Sbjct: 61 MSDPNFDTYVSVMHALFALED 81 >gi|331087783|ref|ZP_08336709.1| hypothetical protein HMPREF1025_00292 [Lachnospiraceae bacterium 3_1_46FAA] gi|330409764|gb|EGG89200.1| hypothetical protein HMPREF1025_00292 [Lachnospiraceae bacterium 3_1_46FAA] Length = 227 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 33/96 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +RI+ Q + + GI+ Y G A +++ I++ L+ + + + Sbjct: 4 IAERIKFAMKAKNKKQVDIVKDTGISKGAFSSYLSGQYNPKADKMELIADSLDVDLRWLY 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + + ++ F + L I Sbjct: 64 GQNVPMEHTSQNDNALQYVFYNNSCSEYLLDNLDDI 99 >gi|330807428|ref|YP_004351890.1| transcription factor, Cro/Ci family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375536|gb|AEA66886.1| Putative transcription factor, Cro/Ci family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 81 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G IR RR+ + +SQE L + G+ + K E+G V + I+ ++ S Sbjct: 17 LGASIRARRLDMRLSQEALADLAGVDRSHMGKIERGERNVTFLNILRIAMAMQCKPSDLL 76 Query: 75 DVSP 78 + Sbjct: 77 TDAG 80 >gi|326772583|ref|ZP_08231867.1| DNA-binding protein [Actinomyces viscosus C505] gi|326637215|gb|EGE38117.1| DNA-binding protein [Actinomyces viscosus C505] Length = 103 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 6/76 (7%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV------NRVGASRLQHIS 63 P+ +G R++ R+ G+SQE L GI+ QK+EKG L ++ Sbjct: 28 PIARQLGLRLQRARIAKGLSQEALAHAAGISSYTYQKFEKGESRPGTPMNPRLRTLIALA 87 Query: 64 EVLESPISFFFDVSPT 79 L+ + Sbjct: 88 TALDMQVEELVGELSE 103 >gi|322804725|emb|CBZ02277.1| transcriptional repressor [Clostridium botulinum H04402 065] Length = 63 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 29/58 (50%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 K++++ R+ MSQE+L + +G+T Q + E G + I + L ++ F Sbjct: 4 KKMKIARIECDMSQEQLADAIGVTRQTIGLIELGKYNPSLNLCIAICKALNKTLNDLF 61 >gi|297155775|gb|ADI05487.1| BldD regulator of morphogenesis and anitbiotic production [Streptomyces bingchenggensis BCW-1] Length = 166 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 2/82 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQ--KYEKGVNRVGASRLQHISE 64 + + +G ++R R G+S + E ++ V YE+G V RL +++ Sbjct: 1 MSSEYAKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELAD 60 Query: 65 VLESPISFFFDVSPTVCSDISS 86 P+ + + Sbjct: 61 FYGVPVQELLPGTSPAGAAEPP 82 >gi|237741715|ref|ZP_04572196.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256845043|ref|ZP_05550501.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294785671|ref|ZP_06750959.1| DNA-binding protein [Fusobacterium sp. 3_1_27] gi|229429363|gb|EEO39575.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13] gi|256718602|gb|EEU32157.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2] gi|294487385|gb|EFG34747.1| DNA-binding protein [Fusobacterium sp. 3_1_27] Length = 182 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 26/63 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++I V + I+ R +S L + ++ + + E+G S L I+ ++ Sbjct: 4 LNILVSENIKRIRQEKNLSLGDLAKLSDVSKSMLAQIERGEGNPTLSTLWKIANGMQVSF 63 Query: 71 SFF 73 + Sbjct: 64 NTL 66 >gi|225388239|ref|ZP_03757963.1| hypothetical protein CLOSTASPAR_01974 [Clostridium asparagiforme DSM 15981] gi|288870897|ref|ZP_06115676.2| putative, transcriptional regulator [Clostridium hathewayi DSM 13479] gi|293402442|ref|ZP_06646578.1| transcriptional regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|296450749|ref|ZP_06892502.1| conjugative transposon protein [Clostridium difficile NAP08] gi|323485990|ref|ZP_08091321.1| hypothetical protein HMPREF9474_03072 [Clostridium symbiosum WAL-14163] gi|323692841|ref|ZP_08107068.1| hypothetical protein HMPREF9475_01931 [Clostridium symbiosum WAL-14673] gi|225045707|gb|EEG55953.1| hypothetical protein CLOSTASPAR_01974 [Clostridium asparagiforme DSM 15981] gi|288865505|gb|EFC97803.1| putative, transcriptional regulator [Clostridium hathewayi DSM 13479] gi|291304105|gb|EFE45358.1| transcriptional regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291557351|emb|CBL34468.1| Helix-turn-helix [Eubacterium siraeum V10Sc8a] gi|296260593|gb|EFH07435.1| conjugative transposon protein [Clostridium difficile NAP08] gi|323400557|gb|EGA92924.1| hypothetical protein HMPREF9474_03072 [Clostridium symbiosum WAL-14163] gi|323503155|gb|EGB18990.1| hypothetical protein HMPREF9475_01931 [Clostridium symbiosum WAL-14673] Length = 120 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 15/110 (13%), Positives = 37/110 (33%), Gaps = 2/110 (1%) Query: 2 VGNKKIPNPV--DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 + K P P+ G I+ R G S++K+ + L I+ + + E + Sbjct: 1 MKMAKRPVPLYDFKAFGAAIKAARNEYGESRKKVSDELYISPRYLANIENKGQQPSLQVF 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + FF + + + + + G+++ + Sbjct: 61 YDLVTRYHISVDQFFFPNSNAEKSTGRRQLDALLDGMSDKGIRIVTATAR 110 >gi|225571103|ref|ZP_03780120.1| hypothetical protein CLOHYLEM_07209 [Clostridium hylemonae DSM 15053] gi|225160184|gb|EEG72803.1| hypothetical protein CLOHYLEM_07209 [Clostridium hylemonae DSM 15053] Length = 63 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I+ R G+ QE L G++ Q + E ++ +L++ + F Sbjct: 3 NNIKQLRKSRGLRQEDLAARSGVSRQTIIAIENDKYNPTLELAMKLARLLDTTVEELF 60 >gi|62179766|ref|YP_216183.1| regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127399|gb|AAX65102.1| regulatory protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 259 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 2/87 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPIS 71 +N+G R+R R M +L E +G+ + + E G + + +++ L I+ Sbjct: 1 MNIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSRLADCLGVDIA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTP 98 F S + + + + D + Sbjct: 61 ELFT-SDSKGNTVCKHSDMRKDSANVK 86 >gi|50123201|ref|YP_052368.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|50123210|ref|YP_052377.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|49613727|emb|CAG77178.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] gi|49613736|emb|CAG77187.1| putative phage regulatory protein [Pectobacterium atrosepticum SCRI1043] Length = 132 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 32/57 (56%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+RL R +SQ +L E LG+ + ++EKGV+ + +I++VL+ + Sbjct: 18 ERLRLLREARNLSQVRLAELLGVDPRVYNRWEKGVSAPHLETVVNIADVLQVSMDEL 74 >gi|88802552|ref|ZP_01118079.1| hypothetical protein PI23P_08180 [Polaribacter irgensii 23-P] gi|88781410|gb|EAR12588.1| hypothetical protein PI23P_08180 [Polaribacter irgensii 23-P] Length = 297 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 3/62 (4%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK + R G++Q ++ E +T + +Q+ E G +S ++ IS+ LE FF+ Sbjct: 7 GKELIKARKARGLTQAEVAEKCNVTIRTIQRIESGEVTPRSSTIKIISKFLEVD---FFE 63 Query: 76 VS 77 +S Sbjct: 64 IS 65 >gi|332662949|ref|YP_004445737.1| XRE family transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332331763|gb|AEE48864.1| transcriptional regulator, XRE family [Haliscomenobacter hydrossis DSM 1100] Length = 68 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I++ R M+Q +L E + + Q + E G I++VL + F++ Sbjct: 5 IKVERARSNMTQAELAEKVKVARQTIIAIEGGKFVPSTVLAFKIAKVLNCTMDLLFELED 64 Query: 79 TV 80 Sbjct: 65 KD 66 >gi|327467932|gb|EGF13422.1| transcription regulator [Streptococcus sanguinis SK330] Length = 135 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 10/82 (12%), Positives = 27/82 (32%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + ++ R ++QE L E L ++ + ++E L IS + + Sbjct: 1 MKISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + + + Sbjct: 61 LIKEDERLEKKVIEDSKAKKWH 82 >gi|329120702|ref|ZP_08249364.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] gi|327460499|gb|EGF06835.1| transcriptional regulator [Neisseria bacilliformis ATCC BAA-1200] Length = 82 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + P+ + + IR R + +SQE+L I+ + + E+G V + Sbjct: 1 MDETQNSPHAYRMIFAQNIRQIRRMKEISQEELAFAANISRVYIGEVERGSRNVTIDVMG 60 Query: 61 HISEVLESPISFFF 74 IS+ LE P+ Sbjct: 61 RISDALEVPLDKLL 74 >gi|327191185|gb|EGE58228.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 125 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 45/119 (37%), Gaps = 6/119 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPIS--- 71 G+ +R R G+SQ+++ L ++ + E G LQ I+ Sbjct: 5 GEAVRRLRARKGVSQKEMAAALNVSPAYLSALEHGKRGLPTFDLLQRIAGYFNIIWDEAE 64 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 F ++ + + + + + T +L R ++D ++ ++ L+ + + Sbjct: 65 ELFLLARSSDPRVVIDTSGLP-PEYTEFANRLARRIRKLDSAEI-ARLSALLENGAKGD 121 >gi|313905761|ref|ZP_07839120.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] gi|313469367|gb|EFR64710.1| transcriptional regulator, XRE family [Eubacterium cellulosolvens 6] Length = 111 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 31/80 (38%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK+++ R+ G+SQ++ + + + + + E G + A L S + + Sbjct: 6 GKKLKEARVKKGLSQDEAANLMNVAKRAISEMEAGKRSISADELAQFSRIYNVDVRELLF 65 Query: 76 VSPTVCSDISSEENNVMDFI 95 V T D F+ Sbjct: 66 VEFTEAGDEQRLTAKYSSFL 85 >gi|303242620|ref|ZP_07329095.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] gi|302589828|gb|EFL59601.1| transcriptional regulator, XRE family [Acetivibrio cellulolyticus CD2] Length = 64 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 12/73 (16%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + NKK+ ++ R+ +SQE+L E +G+T Q + E G + Sbjct: 1 MKNKKM------------KIARIECDLSQEQLAEKVGVTRQTIGMIESGNYNPTLNLCIE 48 Query: 62 ISEVLESPISFFF 74 I + L ++ F Sbjct: 49 ICKALNKTLNDLF 61 >gi|301052439|ref|YP_003790650.1| phage-related transcritpional regulator [Bacillus anthracis CI] gi|300374608|gb|ADK03512.1| transcriptional regulator, phage-related protein [Bacillus cereus biovar anthracis str. CI] Length = 117 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 51/123 (41%), Gaps = 7/123 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R++ R+ +SQE+ G+ + +T V K+E G G L+ +S+ I + Sbjct: 1 MEIKDRLKQIRIHNKLSQEQFGKEVDLTKGTVSKFENGKAFPGRETLEKVSKRFNVTIDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + S + + E + ++ + + ++++ + +++ + K Sbjct: 61 LYGESEEIDLNAHKYEKF-------KEIMEWLEPLPKNEKDIALEQMLSIAQALNKNHMK 113 Query: 133 YRT 135 + Sbjct: 114 HEK 116 >gi|297544917|ref|YP_003677219.1| XRE family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842692|gb|ADH61208.1| transcriptional regulator, XRE family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 65 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R + ++QE+L LG+T + E G I+ + I F Sbjct: 3 NRLKVYRAMHDLTQEELATKLGVTRATINAIENGRYDPSLKLAFQIARFFKISIEDVF 60 >gi|295101707|emb|CBK99252.1| Predicted transcriptional regulators [Faecalibacterium prausnitzii L2-6] Length = 280 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 32/83 (38%), Gaps = 1/83 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGV-NRVGASRLQHISEVLESPISFF 73 +G+R++ R ++ E+L +GI+ + KYE + + +++ + Sbjct: 7 IGERLKDLRTAQKLTLEQLAAEVGISKSALGKYESDNGKDISPYSILVLADYYGVSCDYL 66 Query: 74 FDVSPTVCSDISSEENNVMDFIS 96 + T ++ + S Sbjct: 67 MGRTETKNHPNTALHELHLSDAS 89 >gi|302533187|ref|ZP_07285529.1| transcriptional regulatory protein [Streptomyces sp. C] gi|302442082|gb|EFL13898.1| transcriptional regulatory protein [Streptomyces sp. C] Length = 198 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 8/64 (12%), Positives = 23/64 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + + ++ R G + + L G++ + + E+ +++ L I+ Sbjct: 11 ALARNLKRWRGERGFTLDALAARAGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTL 70 Query: 74 FDVS 77 D Sbjct: 71 LDHD 74 >gi|186972781|pdb|2R1J|L Chain L, Crystal Structure Of The P22 C2 Repressor Protein In Complex With The Synthetic Operator 9t gi|186972782|pdb|2R1J|R Chain R, Crystal Structure Of The P22 C2 Repressor Protein In Complex With The Synthetic Operator 9t Length = 68 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+RIR RR L + Q LG+ +G++ + ++E+ L +S+ L+ + Sbjct: 7 GERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLLK 66 Query: 76 VS 77 Sbjct: 67 GD 68 >gi|162148383|ref|YP_001602844.1| hypothetical protein GDI_2602 [Gluconacetobacter diazotrophicus PAl 5] gi|161786960|emb|CAP56545.1| hypothetical protein GDI2602 [Gluconacetobacter diazotrophicus PAl 5] Length = 86 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG I R G++Q L + +G+ + +E G + L + L+ P S Sbjct: 11 VAVGAIIERERKRSGVTQTDLAKAIGVQSNAIWGWETGARLPRMNHLFDLLWELDVPQSV 70 Query: 73 FFDVSPTVCS 82 F ++ Sbjct: 71 FLEILAADAK 80 >gi|138895235|ref|YP_001125688.1| PbsX family transcriptional regulator [Geobacillus thermodenitrificans NG80-2] gi|196248177|ref|ZP_03146878.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] gi|134266748|gb|ABO66943.1| Transcriptional regulator PBSX family [Geobacillus thermodenitrificans NG80-2] gi|196211902|gb|EDY06660.1| transcriptional regulator, XRE family [Geobacillus sp. G11MC16] Length = 67 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +++ R+ ++Q++L E +G+T Q + EKG I L + F Sbjct: 3 NNLKVARIQANLTQQQLAEKVGVTRQTISLIEKGKYNPTLKLCLEICYALNKTLDEIF 60 >gi|126649566|ref|ZP_01721807.1| Transcriptional regulator, MerR family protein [Bacillus sp. B14905] gi|126593891|gb|EAZ87814.1| Transcriptional regulator, MerR family protein [Bacillus sp. B14905] Length = 129 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 6/105 (5%) Query: 15 VGKRIRLRRMILGMSQEKLGECL---GITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 VG+++R+ R+ G+SQE++ E G + +V E G + + S L+ + + L+ P Sbjct: 8 VGEQLRIIRLSKGLSQEEVAERTGKLGFSKGRVSNIEHGQSNITLSTLEILMKALDIPPE 67 Query: 72 FFFDVSPTVCSDISSEENNVMDF---ISTPDGLQLNRYFIQIDDV 113 F+ E+N ++D + L +Y ++I Sbjct: 68 ELFNFQKLSGVTDIEEKNLMLDIHRSLLRERNLDEVKYVVRITKD 112 >gi|160898595|ref|YP_001564177.1| XRE family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364179|gb|ABX35792.1| transcriptional regulator, XRE family [Delftia acidovorans SPH-1] Length = 102 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 39/74 (52%), Gaps = 4/74 (5%) Query: 16 GKRIRLRRMILGMSQEKLGEC----LGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G R++ R+ +SQ+ LG + ++ +YE G ++ ++ ++EVL+ P++ Sbjct: 9 GARLKQARLAADLSQKMLGIEAGIDPFVASARINRYELGKHKPDLLTVRKLAEVLKVPMA 68 Query: 72 FFFDVSPTVCSDIS 85 FF+ + +++ Sbjct: 69 FFYSDTDDEVAELL 82 >gi|114327636|ref|YP_744793.1| HTH DNA-binding protein [Granulibacter bethesdensis CGDNIH1] gi|114315810|gb|ABI61870.1| HTH DNA-binding protein [Granulibacter bethesdensis CGDNIH1] Length = 286 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 4/132 (3%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R+ G+ E++ LG++ + +YEKG + +Q ++E+L+ Sbjct: 7 EIGQRLRAYRLESGLRAEEIAARLGVSRAALYRYEKGEV-IKLDTVQRLAELLQVSPLSL 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN-RYFIQIDDVKVRQKIIE--LVRSIVSSE 130 VS S LQ + + + + ++ Sbjct: 66 LGVSIEYQSRPVGYFERARQIEENAAQLQFVGDALCHLTMLDETEAFLAESIISRHAGRS 125 Query: 131 KKYRTIEEECMV 142 K R E+ + Sbjct: 126 KADRLYVEQLVK 137 >gi|145595873|ref|YP_001160170.1| helix-turn-helix domain-containing protein [Salinispora tropica CNB-440] gi|145305210|gb|ABP55792.1| helix-turn-helix domain protein [Salinispora tropica CNB-440] Length = 407 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 8/113 (7%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFF 73 +G+R+ R MSQ+ + LG + V K E+GV R+ S + I++ L + Sbjct: 6 IGRRVAYWRGRRKMSQQVFADRLGKSKSWVDKVERGVRRLDKFSVIYEIADTLRVDVQLL 65 Query: 74 FDVSPTVCSDISS--EENNVMDFISTPDGLQLNRYFIQIDD-----VKVRQKI 119 P SD + ++ V + + + + +R+ + Sbjct: 66 LGKDPERRSDALNCIDQTEVQEIRAALERYDAMSAYFDAAPYPPPLPDMRKAV 118 >gi|15801392|ref|NP_287409.1| hypothetical protein Z1932 [Escherichia coli O157:H7 EDL933] gi|12514864|gb|AAG56021.1|AE005334_8 orf; hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 111 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 1/99 (1%) Query: 4 NKKIPNPV-DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 +K+ N + D ++ + + R ++ +L + G++ + K E+G + A+ L + Sbjct: 8 DKRAKNQIVDSDIARLLLKLRKSRNLTVTELAQRSGVSQAMISKVERGTSSPSATILSRL 67 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 + L +S F + + + +I G+ Sbjct: 68 ANALNITLSKLFAELEMQQNSLVLLADQQQHWIDEETGI 106 >gi|328958840|ref|YP_004373751.1| hypothetical protein CAR_50p370 [Carnobacterium sp. 17-4] gi|328675164|gb|AEB31209.1| hypothetical protein CAR_50p370 [Carnobacterium sp. 17-4] Length = 156 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 32/57 (56%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +++ +++L+R L ++Q+++ + + +T Q + K+E G ++ L+ + + Sbjct: 1 MDISNKLKLKRTELNLTQQQVADKVFVTRQTISKWELGKSQPDLISLKLLDNLFNLS 57 >gi|324991744|gb|EGC23676.1| transcriptional regulator [Streptococcus sanguinis SK353] gi|325686944|gb|EGD28968.1| transcriptional regulator [Streptococcus sanguinis SK72] gi|325688753|gb|EGD30762.1| transcriptional regulator [Streptococcus sanguinis SK115] gi|325697682|gb|EGD39567.1| transcriptional regulator [Streptococcus sanguinis SK160] gi|327459306|gb|EGF05652.1| transcriptional regulator [Streptococcus sanguinis SK1] gi|327462426|gb|EGF08751.1| transcriptional regulator [Streptococcus sanguinis SK1057] gi|332362960|gb|EGJ40749.1| transcriptional regulator [Streptococcus sanguinis SK49] gi|332364603|gb|EGJ42372.1| transcriptional regulator [Streptococcus sanguinis SK1059] Length = 71 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFWE 61 Query: 77 SPTVCSDISS 86 D Sbjct: 62 PQLTDEDSED 71 >gi|313668496|ref|YP_004048780.1| DNA-binding protein [Neisseria lactamica ST-640] gi|313005958|emb|CBN87415.1| putative DNA-binding protein [Neisseria lactamica 020-06] Length = 110 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 44/98 (44%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +P++ VG+ + R + G++Q +L E L ++ V + E+G + RL ++E+ Sbjct: 1 MKSPINQTVGRAMAKWRKVSGLTQAQLAERLNLSLDAVSRLERGNIALTVERLVELAEIF 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + T D + +++ + + + L Sbjct: 61 GCETADLLGEGSTRVRDQAVRLESLLGRLDEEERVGLL 98 >gi|302524660|ref|ZP_07277002.1| transcriptional regulator [Streptomyces sp. AA4] gi|302433555|gb|EFL05371.1| transcriptional regulator [Streptomyces sp. AA4] Length = 185 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 2/92 (2%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + +P+ +++ +R R +S L E G++ + K E+G + A L ++ L Sbjct: 1 MTDPLSVSLAAAVREARQDRALSAGVLAERSGVSRAMIGKIERGEAQPTAVLLSRLATAL 60 Query: 67 ESPISFFF--DVSPTVCSDISSEENNVMDFIS 96 +S ++ D ++ Sbjct: 61 GLTLSELIARAEGDDRRLARREDQPTWQDPVT 92 >gi|239939646|ref|ZP_04691583.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|239986130|ref|ZP_04706794.1| DNA-binding protein [Streptomyces roseosporus NRRL 11379] Length = 182 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 33/104 (31%), Gaps = 3/104 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R+ R G S ++L G++ + + E+ A+ L + V +S Sbjct: 8 RLADLRTEHGWSLDELARRSGVSRSTLSRLERCEVSPTATLLGRLCTVYGRTMSRLLMEV 67 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 + + + R + +R +++E Sbjct: 68 EAEPPPLVPAARQT---VWRDEAAGFVRRSVSPPHPGLRAEVVE 108 >gi|222033322|emb|CAP76062.1| hypothetical protein LF82_280 [Escherichia coli LF82] Length = 381 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 33/69 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R G++ +L L I+ Q + +EKG+ A L I++VL P FF Sbjct: 18 RRLEEAREAKGLTMAELARVLNISRQAISSFEKGLKSPSADTLSAIAKVLGFPERFFLAS 77 Query: 77 SPTVCSDIS 85 S + + + Sbjct: 78 SASPSLEGA 86 >gi|255616990|ref|XP_002539799.1| conserved hypothetical protein [Ricinus communis] gi|223502237|gb|EEF22585.1| conserved hypothetical protein [Ricinus communis] Length = 76 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 24/72 (33%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D G +R R +SQE L G+T + + E G + + +VL Sbjct: 4 LDKAFGSLLRELRNERALSQEALAADAGLTRNYISQLELGSKCPSLRTVFKLCKVLGVAP 63 Query: 71 SFFFDVSPTVCS 82 + Sbjct: 64 EDVVGEVDRRSA 75 >gi|253991742|ref|YP_003043098.1| transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638517|emb|CAR67138.1| putative transcriptional regulator [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253783192|emb|CAQ86357.1| putative transcriptional regulator [Photorhabdus asymbiotica] Length = 95 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVL 66 V+ + KR++ R+ ++QEKLG GI +V +YE G ++ + S+VL Sbjct: 2 VNFMINKRLKAARLRANITQEKLGIAAGIDEKSARARVSQYENGTHQPTFEIMCAFSKVL 61 Query: 67 ESPISFFFDVSPTVCSDISS 86 P +F+ V+ + + S Sbjct: 62 NVPECYFYTVNDDLADIVLS 81 >gi|239828402|ref|YP_002951026.1| XRE family transcriptional regulator [Geobacillus sp. WCH70] gi|239808695|gb|ACS25760.1| transcriptional regulator, XRE family [Geobacillus sp. WCH70] Length = 97 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +I+ RR L MSQ++L + +G+ + + E G+ L IS+ L +P Sbjct: 26 IAAQIKTRRKQLNMSQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80 >gi|167767673|ref|ZP_02439726.1| hypothetical protein CLOSS21_02206 [Clostridium sp. SS2/1] gi|317499148|ref|ZP_07957425.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167710690|gb|EDS21269.1| hypothetical protein CLOSS21_02206 [Clostridium sp. SS2/1] gi|291560806|emb|CBL39606.1| Helix-turn-helix [butyrate-producing bacterium SSC/2] gi|316893561|gb|EFV15766.1| helix-turn-helix domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 120 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%) Query: 10 PVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 P++ +G +I+ R ++QE+L E I+ + E V L+ I++ L Sbjct: 3 PINYKALGAKIKEYRKKENITQEQLAEMADISLSHMSNVETASVSVSLPALKLIADALGV 62 Query: 69 PISFFF 74 I Sbjct: 63 TIDELL 68 >gi|167768389|ref|ZP_02440442.1| hypothetical protein CLOSS21_02946 [Clostridium sp. SS2/1] gi|167709913|gb|EDS20492.1| hypothetical protein CLOSS21_02946 [Clostridium sp. SS2/1] gi|291560359|emb|CBL39159.1| Predicted transcriptional regulators [butyrate-producing bacterium SSC/2] Length = 105 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 30/80 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I+ R +G++Q ++ E LG+T + E + L + +++ + Sbjct: 7 GTHIKHIRQKMGLTQNQVAEALGVTPGYISNVENNRTAMSLRILTYYAKLCGCSLDSLVG 66 Query: 76 VSPTVCSDISSEENNVMDFI 95 S+ + + + Sbjct: 67 TLDPEYSETALDRELYNAIM 86 >gi|163786116|ref|ZP_02180564.1| hypothetical protein FBALC1_13062 [Flavobacteriales bacterium ALC-1] gi|159877976|gb|EDP72032.1| hypothetical protein FBALC1_13062 [Flavobacteriales bacterium ALC-1] Length = 189 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 29/67 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 + +R + G +QE+L + + + +Q+ EKG + ++ ++ L+ + + Sbjct: 9 NLLYQRKLKGFTQEELADKTTVGVRTIQRIEKGEVQPHLQTVKLLAVGLDVEVDDLLKLE 68 Query: 78 PTVCSDI 84 I Sbjct: 69 NPKEETI 75 >gi|118587295|ref|ZP_01544722.1| transcriptional regulator, GntR family [Oenococcus oeni ATCC BAA-1163] gi|118432284|gb|EAV39023.1| transcriptional regulator, GntR family [Oenococcus oeni ATCC BAA-1163] Length = 142 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 12/103 (11%), Positives = 34/103 (33%), Gaps = 9/103 (8%) Query: 17 KRIRLRRMILGMSQEKLGECLGIT---------FQQVQKYEKGVNRVGASRLQHISEVLE 67 +R+R R G++ ++L + L Q+ +E+G ++ +++ + Sbjct: 4 ERLRALRRGKGITLKQLAKALNKNISRGEAKNTESQIGNWERGERNPNYLEVKKLADYFD 63 Query: 68 SPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + + D++ L N + + Sbjct: 64 VSMDYLVGRYNNDQVDLAKAMITSSKLTYNDTPLDNNDKYEIL 106 >gi|94968151|ref|YP_590199.1| XRE family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550201|gb|ABF40125.1| transcriptional regulator, XRE family [Candidatus Koribacter versatilis Ellin345] Length = 338 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 10/123 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN---RVGASRLQHISEVLESPIS 71 VG RIR R+ G+S L + +G+T Q +Q E+ V+ G + L+ I+ L++ ++ Sbjct: 222 VGSRIRELRLEAGLSLGDLAKRVGLTEQGLQNIEENVDTISNPGLTVLRWIATALKTTVA 281 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE-LVRSIVSSE 130 D D + + + F I R + L R++V + Sbjct: 282 ELVD------PDYAENVIAGIRSTFNERASAIAARFSGISQKDKRALLRRYLHRTLVLLD 335 Query: 131 KKY 133 ++ Sbjct: 336 EEE 338 >gi|78066449|ref|YP_369218.1| XRE family transcriptional regulator [Burkholderia sp. 383] gi|77967194|gb|ABB08574.1| transcriptional regulator, XRE family [Burkholderia sp. 383] Length = 93 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 27/61 (44%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G +R RR+ G+SQE L GI + + E+G + L I++ L S Sbjct: 28 AIGATVRARRLEFGVSQEALALLTGIDRSHMGRIERGQRNLTILNLIRIADALNISPSKL 87 Query: 74 F 74 Sbjct: 88 L 88 >gi|16803302|ref|NP_464787.1| hypothetical protein lmo1262 [Listeria monocytogenes EGD-e] gi|46907488|ref|YP_013877.1| ans operon transcriptional repressor [Listeria monocytogenes serotype 4b str. F2365] gi|47097057|ref|ZP_00234629.1| Ans operon transcriptional repressor, putative [Listeria monocytogenes str. 1/2a F6854] gi|224499065|ref|ZP_03667414.1| ans operon transcriptional repressor, putative [Listeria monocytogenes Finland 1988] gi|224501791|ref|ZP_03670098.1| ans operon transcriptional repressor, putative [Listeria monocytogenes FSL R2-561] gi|226223865|ref|YP_002757972.1| transcriptional regulator (phage-related) [Listeria monocytogenes Clip81459] gi|254829981|ref|ZP_05234636.1| transcriptional regulator (phage-related) protein [Listeria monocytogenes 10403S] gi|254852682|ref|ZP_05242030.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|254898573|ref|ZP_05258497.1| transcriptional regulator (phage-related) protein [Listeria monocytogenes J0161] gi|254911937|ref|ZP_05261949.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|254932421|ref|ZP_05265780.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|254936263|ref|ZP_05267960.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|254992845|ref|ZP_05275035.1| transcriptional regulator (phage-related) protein [Listeria monocytogenes FSL J2-064] gi|255030300|ref|ZP_05302251.1| transcriptional regulator (phage-related) protein [Listeria monocytogenes LO28] gi|284801647|ref|YP_003413512.1| hypothetical protein LM5578_1400 [Listeria monocytogenes 08-5578] gi|284994789|ref|YP_003416557.1| hypothetical protein LM5923_1353 [Listeria monocytogenes 08-5923] gi|300765298|ref|ZP_07075282.1| hypothetical protein LMHG_11441 [Listeria monocytogenes FSL N1-017] gi|16410678|emb|CAC99340.1| lmo1262 [Listeria monocytogenes EGD-e] gi|46880756|gb|AAT04054.1| putative Ans operon transcriptional repressor [Listeria monocytogenes serotype 4b str. F2365] gi|47014592|gb|EAL05553.1| Ans operon transcriptional repressor, putative [Listeria monocytogenes str. 1/2a F6854] gi|225876327|emb|CAS05036.1| Putative transcriptional regulator (phage-related) [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258606002|gb|EEW18610.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503] gi|258608852|gb|EEW21460.1| conserved hypothetical protein [Listeria monocytogenes F6900] gi|284057209|gb|ADB68150.1| hypothetical protein LM5578_1400 [Listeria monocytogenes 08-5578] gi|284060256|gb|ADB71195.1| hypothetical protein LM5923_1353 [Listeria monocytogenes 08-5923] gi|293583978|gb|EFF96010.1| conserved hypothetical protein [Listeria monocytogenes HPB2262] gi|293589898|gb|EFF98232.1| conserved hypothetical protein [Listeria monocytogenes J2818] gi|300513981|gb|EFK41044.1| hypothetical protein LMHG_11441 [Listeria monocytogenes FSL N1-017] gi|328466660|gb|EGF37795.1| hypothetical protein LM1816_08803 [Listeria monocytogenes 1816] Length = 131 Score = 41.3 bits (95), Expect = 0.039, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 6/85 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEV 65 +PN + R+ L R G S+ + LG+ +E G+ + I+ + Sbjct: 1 MPN-----LSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATL 55 Query: 66 LESPISFFFDVSPTVCSDISSEENN 90 + + + S +N Sbjct: 56 YDVSVDYLLGQQSIPTYAPSELQNE 80 >gi|332978243|gb|EGK14973.1| aspartate aminotransferase [Psychrobacter sp. 1501(2011)] Length = 551 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 35/80 (43%), Gaps = 5/80 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECL-----GITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 G+R+ R G++ E+L + ++ + +E+G+N + +S+L ++ +L Sbjct: 11 GERLSKLRKAKGLTAEQLATAMTNAGSKVSRGAISNWERGINGIVSSKLPALANILGCSE 70 Query: 71 SFFFDVSPTVCSDISSEENN 90 + +S ++ Sbjct: 71 GYLLRGELIEPDSNNSSQSQ 90 >gi|332362044|gb|EGJ39846.1| repressor protein [Streptococcus sanguinis SK49] Length = 75 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 1/67 (1%) Query: 17 KRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 KRIR R ++QE + + + T K E G + L +++ + + Sbjct: 3 KRIRDLREDTDLTQEYVAKKILNCTRSAYSKMESGTRLISIDDLIKLADFYNVSLDYLVG 62 Query: 76 VSPTVCS 82 Sbjct: 63 RVDNKED 69 >gi|328545047|ref|YP_004305156.1| XRE family transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326414789|gb|ADZ71852.1| XRE family transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 207 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 13/86 (15%), Positives = 31/86 (36%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLE 67 P +D + R++ R+ G S + L G++ + + E A+ L + Sbjct: 25 PAQLDRQIADRLKALRLQRGWSLDDLARLSGVSRASLSRLENAEVSASAATLGRLCAAHG 84 Query: 68 SPISFFFDVSPTVCSDISSEENNVMD 93 P+S + + + + + Sbjct: 85 MPLSRLMYLVEEGFAPLIRYSDQPLW 110 >gi|320006230|gb|ADW01260.1| xre family toxin-antitoxin system [Lactobacillus phage LF1] Length = 107 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 29/83 (34%), Gaps = 1/83 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 KR+ + R G S+ + + +G+T Q YE G + ++ + + Sbjct: 6 KRLSVLREQKGWSKTYVAKQIGLTSMQTYANYEYGRREPDFETTKKLANLFNVSTDYLLG 65 Query: 76 VSPTVCSDISSEENNVMDFISTP 98 + +++ + + Sbjct: 66 RAAPDEGRNTADLADDDTIFTYK 88 >gi|312126969|ref|YP_003991843.1| helix-turn-helix domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311776988|gb|ADQ06474.1| helix-turn-helix domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 103 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 52/122 (42%), Gaps = 19/122 (15%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 ++VG RIR R + + +++ G++ + EKG+ + L+ I + +S Sbjct: 1 MDVGSRIRYFRKLYNKTLKEISLDTGLSISFISNIEKGIKKCSLENLEVICSAIGITLSE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FF+ + + +L +++ K+ + ++ + RS+ + +K+ Sbjct: 61 FFNDNLPPEIE------------------ELISIAKNLENDKL-KTLLTVARSLKAEQKE 101 Query: 133 YR 134 + Sbjct: 102 SK 103 >gi|310822072|ref|YP_003954430.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1] gi|309395144|gb|ADO72603.1| transcriptional repressor [Stigmatella aurantiaca DW4/3-1] Length = 119 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 3/115 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R R LG++Q ++ LGI + E+G L + VL Sbjct: 8 QIGSAAREARTHLGLTQAEVAGKLGIAHMVYSRLERGKMLPSVPTLLRMCSVLHISADEL 67 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 S T + + + ++ + D ++ + + ++ Sbjct: 68 LGNSGTQEVSRPAHGSRGQSEL---PQVRQLLGLARKMDEDKLHALVTVAQVLLR 119 >gi|283479602|emb|CAY75518.1| HTH-type transcriptional regulator ansR; Ans operon repressor protein [Erwinia pyrifoliae DSM 12163] Length = 140 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M GKR++ R +Q+++ +G+ Q KYE G++ A +L Sbjct: 8 MTDELMQTEEQRRAFGKRLKELRNQQRRTQKEVAALIGLQLSQYNKYESGMHIPPAEKLI 67 Query: 61 HISEVLESPISF 72 ++E+ + I + Sbjct: 68 QLAELFTTTIDY 79 >gi|225376666|ref|ZP_03753887.1| hypothetical protein ROSEINA2194_02308 [Roseburia inulinivorans DSM 16841] gi|225211549|gb|EEG93903.1| hypothetical protein ROSEINA2194_02308 [Roseburia inulinivorans DSM 16841] Length = 255 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 45/124 (36%), Gaps = 8/124 (6%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 N+K + + + ++I R L MSQ +L GI + + K A +L I Sbjct: 6 KNRKNIRRLYMKIYEKIFERLEELNMSQIELSGRTGIATSTISDWRKKQINPQADKLVPI 65 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + LE I+ + + S + D I + + V+++I+ Sbjct: 66 CKALEMSITDLLCDEDDKKNKVLSRDYVGEDHILIEKNIS--------STIGVKRRILNF 117 Query: 123 VRSI 126 + Sbjct: 118 YEQM 121 >gi|191174537|ref|ZP_03036034.1| regulatory protein [Escherichia coli F11] gi|300992733|ref|ZP_07180010.1| peptidase S24-like domain protein [Escherichia coli MS 200-1] gi|190905183|gb|EDV64825.1| regulatory protein [Escherichia coli F11] gi|300305229|gb|EFJ59749.1| peptidase S24-like domain protein [Escherichia coli MS 200-1] gi|324015072|gb|EGB84291.1| peptidase S24-like domain protein [Escherichia coli MS 60-1] Length = 230 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 38/101 (37%), Gaps = 1/101 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPIS 71 +N+G R+R R M L E +G+ + + E G + + +I++ L I+ Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 F + + + + + + +++ + Sbjct: 61 DLFTSALKSNTVYKNSNDEDVAQVKDVFRIEMLDISASAGN 101 >gi|169351011|ref|ZP_02867949.1| hypothetical protein CLOSPI_01788 [Clostridium spiroforme DSM 1552] gi|169292073|gb|EDS74206.1| hypothetical protein CLOSPI_01788 [Clostridium spiroforme DSM 1552] Length = 117 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 49/125 (39%), Gaps = 15/125 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GKRIR R+ +SQ+ L E I+ + E+G ++ L I+ L F Sbjct: 8 IGKRIREERISQNLSQQTLAEISNISPTNISHIERGATKLSLPTLVSIANALAVSADFLL 67 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 S + + + + + II++++S+ + +++ Sbjct: 68 CDSLVE---------------ADKIYIDEINELLLDCNPNELKIIIDIMKSVKITLRRHN 112 Query: 135 TIEEE 139 ++++ Sbjct: 113 KLDKK 117 >gi|89096186|ref|ZP_01169079.1| DNA-binding protein [Bacillus sp. NRRL B-14911] gi|89089040|gb|EAR68148.1| DNA-binding protein [Bacillus sp. NRRL B-14911] Length = 67 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R +Q+ L + +G++ Q + EKG + IS V P+ F + Sbjct: 6 VREMRARFRYTQQDLADKIGVSRQTIGLIEKGDYAPSITLALKISSVFGVPVEQIFHLEG 65 Query: 79 TV 80 Sbjct: 66 EE 67 >gi|86134662|ref|ZP_01053244.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] gi|85821525|gb|EAQ42672.1| DNA binding helix-turn helix protein [Polaribacter sp. MED152] Length = 84 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+I RR LG++Q + E L +T+ K E G ++ RL I + L FF+ Sbjct: 22 KKIVDRRKELGLTQWDISEQLNLTYSGYFKVETGKTKLDVYRLFEILDTLNITPKEFFED 81 Query: 77 SP 78 Sbjct: 82 FE 83 >gi|85708592|ref|ZP_01039658.1| transcriptional regulator, Cro/CI family protein [Erythrobacter sp. NAP1] gi|85690126|gb|EAQ30129.1| transcriptional regulator, Cro/CI family protein [Erythrobacter sp. NAP1] Length = 64 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 24/61 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R SQ +L L ++ Q V E G + I+ + E I FD Sbjct: 3 NRLKVLRAERDWSQAELAGRLDVSRQAVNAIETGKHDPSLPLAFRIARLFEMGIEEIFDD 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|331085764|ref|ZP_08334847.1| hypothetical protein HMPREF0987_01150 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406687|gb|EGG86192.1| hypothetical protein HMPREF0987_01150 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 108 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 42/117 (35%), Gaps = 14/117 (11%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI G++Q +L E +G+T + +Y + +I+ L + + Sbjct: 6 LGGRIAELLEKNGLTQRELAEKVGVTEVSMSRYISNDRTPKGPVIANIATALHTTSDYLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + +++R + R++ EL+ +++ + Sbjct: 66 GTEEVGDFE--------------SEYYKIHRLIARNASQMTRKQRNELINALLEPDD 108 >gi|301054831|ref|YP_003793042.1| DNA-binding protein [Bacillus anthracis CI] gi|300377000|gb|ADK05904.1| hypothetical DNA-binding protein [Bacillus cereus biovar anthracis str. CI] Length = 67 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L M+QE L + + + + + EKG I+ L S I F Sbjct: 6 KIKEYRAKLNMTQEDLAKQVSVRRETISHLEKGKYNPSLQLAHDIARALHSTIDEVFIFE 65 Query: 78 PT 79 Sbjct: 66 DE 67 >gi|260587029|ref|ZP_05852942.1| transcriptional regulator [Blautia hansenii DSM 20583] gi|331086463|ref|ZP_08335542.1| hypothetical protein HMPREF0987_01845 [Lachnospiraceae bacterium 9_1_43BFAA] gi|260542519|gb|EEX23088.1| transcriptional regulator [Blautia hansenii DSM 20583] gi|330410521|gb|EGG89949.1| hypothetical protein HMPREF0987_01845 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 143 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 36/81 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++IR R+ G +Q++L G++ ++ YE G + +L+ I+ L+ Sbjct: 1 MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISPYA 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 D + + + D Sbjct: 61 MSDPNFDTYVSVMHALFALED 81 >gi|255526755|ref|ZP_05393656.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] gi|255509533|gb|EET85872.1| transcriptional regulator, XRE family [Clostridium carboxidivorans P7] Length = 71 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R L +SQ++L G++ Q + E G A +++ L+ F + Sbjct: 9 NRLKVARAELNISQQQLANMAGVSRQTISSIETGQYCPTAKLALILAKCLQKKFEDLFYL 68 Query: 77 SPT 79 Sbjct: 69 EEE 71 >gi|163938006|ref|YP_001642891.1| XRE family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865861|gb|ABY46916.1| transcriptional regulator, XRE family [Bacillus weihenstephanensis KBAB4] Length = 64 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+L R+ ++QE+L + + Q + EKG I++ L+ ++ F Sbjct: 3 NKIKLSRIEKSLTQEQLAFQVKVARQTIGLIEKGKYNPSLQLCLAIAKALDKTLNDLF 60 >gi|116495669|ref|YP_807403.1| XRE family transcriptional regulator [Lactobacillus casei ATCC 334] gi|191639155|ref|YP_001988321.1| Repressor (Gp132 protein) [Lactobacillus casei BL23] gi|227533777|ref|ZP_03963826.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239630070|ref|ZP_04673101.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067217|ref|YP_003789240.1| XRE family transcriptional regulator [Lactobacillus casei str. Zhang] gi|116105819|gb|ABJ70961.1| Transcriptional regulator, xre family [Lactobacillus casei ATCC 334] gi|190713457|emb|CAQ67463.1| Repressor (Gp132 protein) [Lactobacillus casei BL23] gi|227188613|gb|EEI68680.1| XRE family transcriptional regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527682|gb|EEQ66683.1| transcriptional regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439624|gb|ADK19390.1| Transcriptional regulator, xre family [Lactobacillus casei str. Zhang] gi|327383225|gb|AEA54701.1| hypothetical protein LC2W_2370 [Lactobacillus casei LC2W] gi|327386410|gb|AEA57884.1| hypothetical protein LCBD_2389 [Lactobacillus casei BD-II] Length = 129 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 26/90 (28%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R R G S ++ + + K+E ++ ++E + Sbjct: 6 VGSVLRQIRKGRGESIVEVAKATHTSPASFTKWENDQTIPSERSIRKLAEYYNTDPLELL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 V+ E + + L Sbjct: 66 SVAYPDKYAQKQENEQPVGDGPSIRVEDLL 95 >gi|116494490|ref|YP_806224.1| transcriptional regulator [Lactobacillus casei ATCC 334] gi|116104640|gb|ABJ69782.1| Predicted transcriptional regulator [Lactobacillus casei ATCC 334] Length = 62 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 I RM ++Q++L + + +T Q + E S ++E LE+ + F Sbjct: 3 NNIHALRMRQKLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALAECLETTVDQLF 60 >gi|325695196|gb|EGD37097.1| transcriptional regulator [Streptococcus sanguinis SK150] Length = 71 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFWE 61 Query: 77 SPTVCSDISS 86 D Sbjct: 62 LQLTDEDSED 71 >gi|325274702|ref|ZP_08140747.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324100169|gb|EGB97970.1| XRE family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 187 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 47/145 (32%), Gaps = 10/145 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M V +V +R R GMSQ L E G++ + + E G V + L Sbjct: 1 MHKESAHRASVLQHVSLNVRSLRNAAGMSQAVLAERSGVSRRMLVAIEAGEKNVSLTTLD 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 I+E L S E + + L + R+++ Sbjct: 61 LIAEALGVAFSTLIQAPDLRDPGRIEELAWAGEHPQSRAVL--------LGTSAARREV- 111 Query: 121 ELVR-SIVSSEKKYRTIEEECMVEQ 144 EL ++ E+ + E EQ Sbjct: 112 ELWEWTLAPGERYASEADAEGWSEQ 136 >gi|294085273|ref|YP_003552033.1| DNA-binding protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292664848|gb|ADE39949.1| DNA-binding protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 208 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 36/84 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +++ +G+ +R R ++ +L GI+ V K E G S LQ +S L + Sbjct: 20 LELAIGREVRAHRKQQNITVAELAHLTGISIGMVSKIENGNTSPSLSTLQTLSNALGVTL 79 Query: 71 SFFFDVSPTVCSDISSEENNVMDF 94 + FF + I ++ ++ Sbjct: 80 TSFFRRFEESRTAIHTKAGEGVEM 103 >gi|321314155|ref|YP_004206442.1| hypothetical protein BSn5_14035 [Bacillus subtilis BSn5] gi|291482927|dbj|BAI84002.1| putative transcriptional regulator [Bacillus subtilis subsp. natto BEST195] gi|320020429|gb|ADV95415.1| hypothetical protein BSn5_14035 [Bacillus subtilis BSn5] Length = 84 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 4/82 (4%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 MV K + + ++ R++ +SQ++L + +G++ Q + EKG Sbjct: 6 MVMKKDFGDSIS----NKVYEYRVLARLSQQELAKKVGVSKQTIFVMEKGNYVPTLLLAF 61 Query: 61 HISEVLESPISFFFDVSPTVCS 82 I+E ++ F Sbjct: 62 RIAEFFNVDVNEIFTYEKGNDQ 83 >gi|271502279|ref|YP_003335305.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|270345834|gb|ACZ78599.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] Length = 87 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 4/84 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R++ G+SQE+LG GI + +YE+G++ + ++ VL P + Sbjct: 4 HRLKAARLMAGLSQERLGILAGIDEATASARMNQYERGIHTPDFELARRLAAVLHVPACY 63 Query: 73 FFDVSPTVCSDISSEENNVMDFIS 96 F+ V + I S + + S Sbjct: 64 FYTVEDDLAEMILSFYDTKENPSS 87 >gi|238923032|ref|YP_002936545.1| hypothetical protein EUBREC_0622 [Eubacterium rectale ATCC 33656] gi|238874704|gb|ACR74411.1| Hypothetical protein EUBREC_0622 [Eubacterium rectale ATCC 33656] Length = 147 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 36/81 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG++IR R+ G +Q++L G++ ++ YE G + +L+ I+ L+ Sbjct: 1 MTVGEKIRKFRIDQGYTQKELAIMSGLSESAIRNYELGNRFPSSEQLEKIANSLKISPYA 60 Query: 73 FFDVSPTVCSDISSEENNVMD 93 D + + + D Sbjct: 61 MSDPNFDTYVSVMHALFALED 81 >gi|238921804|ref|YP_002935318.1| hypothetical protein EUBELI_20037 [Eubacterium eligens ATCC 27750] gi|238873476|gb|ACR73184.1| Hypothetical protein EUBELI_20037 [Eubacterium eligens ATCC 27750] Length = 97 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 29/68 (42%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + V IR R G+ Q+ L +G + + V + E+G + A + IS+ + Sbjct: 30 IFMAVTNNIREIREQRGIYQDDLAAAIGYSTKTVGRIERGDSTPSAEFMLRISKYFNMLV 89 Query: 71 SFFFDVSP 78 F V Sbjct: 90 EDVFHVED 97 >gi|228954773|ref|ZP_04116794.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072008|ref|ZP_04205218.1| Transcriptional regulator, Xre [Bacillus cereus F65185] gi|229081756|ref|ZP_04214249.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] gi|229111966|ref|ZP_04241510.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] gi|229152697|ref|ZP_04280884.1| Transcriptional regulator, Xre [Bacillus cereus m1550] gi|229180769|ref|ZP_04308107.1| Transcriptional regulator, Xre [Bacillus cereus 172560W] gi|229192702|ref|ZP_04319661.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] gi|228590792|gb|EEK48652.1| Transcriptional regulator, Xre [Bacillus cereus ATCC 10876] gi|228602747|gb|EEK60230.1| Transcriptional regulator, Xre [Bacillus cereus 172560W] gi|228630760|gb|EEK87402.1| Transcriptional regulator, Xre [Bacillus cereus m1550] gi|228671530|gb|EEL26830.1| Transcriptional regulator, Xre [Bacillus cereus Rock1-15] gi|228701601|gb|EEL54094.1| Transcriptional regulator, Xre [Bacillus cereus Rock4-2] gi|228711167|gb|EEL63132.1| Transcriptional regulator, Xre [Bacillus cereus F65185] gi|228804893|gb|EEM51491.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 194 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 5 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVI 64 Query: 60 QHISEVLESPISFFF 74 I++ L P+S Sbjct: 65 WKITKGLSIPLSRLM 79 >gi|218234511|ref|YP_002369300.1| DNA-binding protein [Bacillus cereus B4264] gi|228923247|ref|ZP_04086537.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|218162468|gb|ACK62460.1| DNA-binding protein [Bacillus cereus B4264] gi|228836453|gb|EEM81804.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 190 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 1 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVI 60 Query: 60 QHISEVLESPISFFF 74 I++ L P+S Sbjct: 61 WKITKGLSIPLSRLM 75 >gi|187477472|ref|YP_785496.1| transcriptional regulator [Bordetella avium 197N] gi|115422058|emb|CAJ48581.1| putative transcriptional regulator [Bordetella avium 197N] Length = 188 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 1/90 (1%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 N IP+P I + R+R+ R G S +L + G++ + K E+ A+ L +S Sbjct: 2 NNPIPDP-SIAIATRLRIEREARGWSLGELADRSGVSKAMISKIERCEASPTATILGKLS 60 Query: 64 EVLESPISFFFDVSPTVCSDISSEENNVMD 93 +S ++ +S + + Sbjct: 61 GAFGLQLSMLLALAERTGERLSKADAQSVW 90 >gi|103486951|ref|YP_616512.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98977028|gb|ABF53179.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 206 Score = 41.3 bits (95), Expect = 0.040, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 45/124 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G ++ R G + +++ GI + K E + +LQ +S+ L+ +S F Sbjct: 10 LGAVMKGIRARNGWTLKEMSAKSGIPVSTLSKVEHDRLTLSYDKLQQLSQRLKIRMSDLF 69 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 ++ + + Y D++ ++ I L R S +++ Sbjct: 70 AEDEEDAPRVTGRRSIAAIERAARVTTDNYDYHYLCTDLRQKRMIPILTRIRAHSAREFG 129 Query: 135 TIEE 138 + Sbjct: 130 ELVR 133 >gi|307129576|ref|YP_003881592.1| hypothetical protein Dda3937_01730 [Dickeya dadantii 3937] gi|306527105|gb|ADM97035.1| hypothetical protein Dda3937_01730 [Dickeya dadantii 3937] Length = 116 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 4/75 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLE 67 + +GKR+RL R+ +G++Q +LG GI + V +YEK + + + VL+ Sbjct: 20 NTVIGKRLRLARVNVGLTQAELGRQAGIDEESAGARVSQYEKETHAPDFKLVCRFAAVLD 79 Query: 68 SPISFFFDVSPTVCS 82 P ++F+ V + + Sbjct: 80 VPEAYFYAVDDDLAT 94 >gi|300723214|ref|YP_003712514.1| DNA-binding protein [Xenorhabdus nematophila ATCC 19061] gi|297629731|emb|CBJ90337.1| DNA-binding protein [Xenorhabdus nematophila ATCC 19061] Length = 180 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 34/78 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +++ R LG++ + L E G+T + K E+G+++ + +S L + F V Sbjct: 5 LKILRKKLGLTLDSLAEKTGMTKSYLSKVERGLSKPSIATALKLSIALNVSVEELFSVDN 64 Query: 79 TVCSDISSEENNVMDFIS 96 S ++ ++ Sbjct: 65 IRQGSYSLVRSDERQMLA 82 >gi|283479609|emb|CAY75525.1| HTH-type transcriptional regulator ansR; Ans operon repressor protein [Erwinia pyrifoliae DSM 12163] Length = 140 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M GKR++ R +Q+++ +G+ Q KYE G++ A +L Sbjct: 8 MTDELMQTEEQRRAFGKRLKELRNQQRRTQKEVAALIGLQLSQYNKYESGMHIPPAEKLI 67 Query: 61 HISEVLESPISF 72 ++E+ + I + Sbjct: 68 QLAELFTTTIDY 79 >gi|261419589|ref|YP_003253271.1| XRE family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297530435|ref|YP_003671710.1| XRE family transcriptional regulator [Geobacillus sp. C56-T3] gi|319766405|ref|YP_004131906.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] gi|261376046|gb|ACX78789.1| transcriptional regulator, XRE family [Geobacillus sp. Y412MC61] gi|297253687|gb|ADI27133.1| transcriptional regulator, XRE family [Geobacillus sp. C56-T3] gi|317111271|gb|ADU93763.1| helix-turn-helix domain protein [Geobacillus sp. Y412MC52] Length = 97 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 29/55 (52%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +I+ RR L MSQ++L + +G+ + + E G+ L IS+ L +P Sbjct: 26 IAAQIKTRRKQLNMSQQELADRIGVPKSTIGRIEAGLTSPRVETLFKISQALNTP 80 >gi|229551178|ref|ZP_04439903.1| possible repressor [Lactobacillus rhamnosus LMS2-1] gi|229315470|gb|EEN81443.1| possible repressor [Lactobacillus rhamnosus LMS2-1] Length = 203 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 8/93 (8%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGIT---FQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+RI+ R+ G + E+ +G+T V ++E+G++ A ++ I+ + Sbjct: 13 LGERIKSIRISKGETMEEFALSVGLTSSGKSAVSRWERGLSAPSADTMKKIANHGGISVQ 72 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F P + +L Sbjct: 73 FLVTGKP-----AFEDLPEDQQMELRKQRDELL 100 >gi|222530443|ref|YP_002574325.1| XRE family transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457290|gb|ACM61552.1| transcriptional regulator, XRE family [Caldicellulosiruptor bescii DSM 6725] Length = 67 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISFF 73 GK+I+ R + G SQ++L + G++ + + E G ++ I+EVLE I Sbjct: 4 GKKIKELRKLKGFSQKELAKLTGVSQSYISELEAGIKTNPSIKVIKRIAEVLEIDICQL 62 >gi|192361034|ref|YP_001984168.1| adenine-specific DNA methyltransferase [Cellvibrio japonicus Ueda107] gi|190687199|gb|ACE84877.1| adenine-specific DNA methyltransferase [Cellvibrio japonicus Ueda107] Length = 72 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GKR++ R M+QE+L E +GIT + + E+G+ L+ ++ L P+ F Sbjct: 8 GKRVQQLRFARKMTQEQLAERVGITIESISNIERGIYGPSFDTLEKLAIALRVPVQSLFA 67 Query: 76 VSPT 79 Sbjct: 68 FDEP 71 >gi|197122398|ref|YP_002134349.1| XRE family transcriptional regulator [Anaeromyxobacter sp. K] gi|220917180|ref|YP_002492484.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] gi|196172247|gb|ACG73220.1| transcriptional regulator, XRE family [Anaeromyxobacter sp. K] gi|219955034|gb|ACL65418.1| transcriptional regulator, XRE family [Anaeromyxobacter dehalogenans 2CP-1] Length = 81 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 27/57 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 +G+R+R R GM+QE L E L ++ V E+G + + I+ L P Sbjct: 17 RRLGERVREHRRGRGMTQEALAEALDLSVAYVSLIERGGRNPPYTTVVAIARALGIP 73 >gi|149921943|ref|ZP_01910386.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149817205|gb|EDM76683.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 128 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 42/95 (44%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 GK ++ RM GM+QE+L E G++ +++ E L + + +S FF Sbjct: 18 GKHVKSLRMARGMTQEQLAERAGLSADTIRRLEHAGFSPSLDTLFKLCLGFDLLLSTFFI 77 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 D + E +++ P+ +++ I++ Sbjct: 78 SYELGERDEARELIDIVSGRRDPEDIEMATTMIRL 112 >gi|104782559|ref|YP_609057.1| Cro/CI family transcriptional regulator [Pseudomonas entomophila L48] gi|95111546|emb|CAK16266.1| putative transcriptional regulator, Cro/CI family [Pseudomonas entomophila L48] Length = 177 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 31/88 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +V + +R R G+SQ L E G++ + + E G V + L I+E L S Sbjct: 4 HVSQNVRRLRSDAGLSQAALSERSGVSRRMLVAIEAGEKNVSLTTLDLIAEALGVAFSTL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGL 101 E + + L Sbjct: 64 IQAPDQRDPSRIDELAWAGEHPGSRAVL 91 >gi|146299117|ref|YP_001193708.1| helix-turn-helix domain-containing protein [Flavobacterium johnsoniae UW101] gi|146153535|gb|ABQ04389.1| helix-turn-helix domain protein [Flavobacterium johnsoniae UW101] Length = 76 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +R R G+SQ+ L + I Q+ + E G L I+ L+ Sbjct: 10 VNLGVHVRQLREKKGLSQQGLADDCNINKSQIARLEVAKVNTGIKTLVKIANALDIEPKE 69 Query: 73 FFD 75 D Sbjct: 70 LLD 72 >gi|68697729|emb|CAJ14057.1| hypothetical protein [Streptomyces viridochromogenes] Length = 192 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 31/80 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R+ ++ + L + ++ + E+G L I E L + Sbjct: 7 LGSRIQELRLSQSLTLQDLADRAAVSVSMLSSVERGRKAPTVVVLARIPEGLGVTAAHLL 66 Query: 75 DVSPTVCSDISSEENNVMDF 94 V ++E++ V + Sbjct: 67 TEPAPVRVRRAAEQDVVEEP 86 >gi|299534387|ref|ZP_07047722.1| MerR family transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298730151|gb|EFI70691.1| MerR family transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 116 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG I+ R + ++QE+L E G+ + E+G L+ I+E LE S F Sbjct: 8 VGSNIKEIRKLKKLTQEELAEKCGLQASYLAGVERGDRNFTIQTLEKITEGLEVAPSSIF 67 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 + E+ ++ + Sbjct: 68 KFETLNFDNKYFEKKELIMILQN 90 >gi|289166201|ref|YP_003456339.1| phage repressor [Legionella longbeachae NSW150] gi|288859374|emb|CBJ13310.1| putative phage repressor [Legionella longbeachae NSW150] Length = 229 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 44/106 (41%), Gaps = 3/106 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G+RI + R G++++ L E + ++ YE+G G + ++ +++VLE Sbjct: 5 IKKKIGQRIMIERKAKGLTRKALAELTGELKISRINNYERGDRTPGPTEIKLLADVLEVS 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDF--ISTPDGLQLNRYFIQIDDV 113 S+ ++ I+ + L+ +I + Sbjct: 65 ASYLMCLTDNREGKITKSPGMGALIPVLDYKQAADLDNCIQKIKED 110 >gi|258514722|ref|YP_003190944.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] gi|257778427|gb|ACV62321.1| transcriptional regulator, XRE family [Desulfotomaculum acetoxidans DSM 771] Length = 116 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G RIR R G +QE++ E + T Q+ + EKG+ + + I+++L Sbjct: 1 MNAVLGARIRALRESKGFTQEQVAEKMSCTRQKYARIEKGLIDTSYASITAIAQILGIKT 60 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPD 99 N Sbjct: 61 EEITSSVDNTDQKQPMFRENGATIQEDKF 89 >gi|254497800|ref|ZP_05110568.1| conserved hypothetical protein [Legionella drancourtii LLAP12] gi|254352977|gb|EET11744.1| conserved hypothetical protein [Legionella drancourtii LLAP12] Length = 187 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 28/67 (41%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + + K ++ R G S +K G++ + + E+ + S L I+ ++ Sbjct: 4 ISNRIAKTLKSLRQERGWSLDKTALETGVSKAMLGQIEREESSPTISTLWKIASGFQTSF 63 Query: 71 SFFFDVS 77 S F + S Sbjct: 64 SSFIEDS 70 >gi|253577019|ref|ZP_04854342.1| helix-turn-helix domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843629|gb|EES71654.1| helix-turn-helix domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 120 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 15/107 (14%), Positives = 41/107 (38%), Gaps = 2/107 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ +RI L GM+++ LGI+ +++G + ++L I+ + + + Sbjct: 1 MSIYERIELLIKNAGMTKKAFCLELGISTGNFGDWKRGKSTPSTNKLIEIAAFFDVSLDW 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + + + + D + + + VR+ I Sbjct: 61 LMTGKEKQAEYVQDQRTEYIS--TDKDWISFIGTLTEAERAFVREYI 105 >gi|227113780|ref|ZP_03827436.1| hypothetical protein PcarbP_12483 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 100 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%) Query: 18 RIRLRRMILGMSQEKLGECLGIT----FQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 R+++ R+ M+QEKLG GI +V +YE G +R + + VL P S+F Sbjct: 16 RLKVARLRAKMTQEKLGVLAGIEEATARSRVSQYESGTHRPTFEMMCAFARVLNVPESYF 75 Query: 74 FDVSP 78 + V Sbjct: 76 YTVDD 80 >gi|224823652|ref|ZP_03696761.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] gi|224604107|gb|EEG10281.1| transcriptional regulator, XRE family [Lutiella nitroferrum 2002] Length = 132 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 1/91 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R G SQ L + GI+ V E+G ++L I+ L+ ++ Sbjct: 21 ALGTRIKAERERRGWSQAALAQRAGISQTTVADLERGT-SAATTKLIPIARALKVNPNWL 79 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 + S + V QL Sbjct: 80 ETGQGPRDTIPSGDGRYVCADTPEELAEQLL 110 >gi|149921216|ref|ZP_01909673.1| DNA-binding protein [Plesiocystis pacifica SIR-1] gi|149817987|gb|EDM77447.1| DNA-binding protein [Plesiocystis pacifica SIR-1] Length = 118 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 GK ++ R G +QE L + ++ +++ E G L+ ++ IS F Sbjct: 14 GKHLKSLRKARGYTQEALAKKAKLSPDTIRRLEAGSFSPSLDTLKSVASGFNLRISTMF 72 >gi|124008859|ref|ZP_01693546.1| repressor [Microscilla marina ATCC 23134] gi|123985547|gb|EAY25439.1| repressor [Microscilla marina ATCC 23134] Length = 120 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 32/68 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 K+++ R +SQ+++ +GI Q ++E G + ++ I++ L +S F Sbjct: 5 KKLKDIRSKKSLSQKEVALSVGIDRGQYSRFENGKAEPSLATIKKIAQALNVKLSDLFAE 64 Query: 77 SPTVCSDI 84 + + D Sbjct: 65 NDELDIDS 72 >gi|54026976|ref|YP_121218.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54018484|dbj|BAD59854.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 381 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 9/113 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+RIR R+ G SQ KL E +G+ + + G L I++V+E+ + + Sbjct: 6 LAVGERIRS-RLPGGTSQRKLAELVGMKPDALSRALNGQRGFSTIELARIADVIEADLYW 64 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 + + T G + DD + ++I+L ++ Sbjct: 65 LITGRRDPRRVEIAARHTWDGTGRTNPG--------RADDDALLDQVIDLYQA 109 >gi|328553992|gb|AEB24484.1| hypothetical protein BAMTA208_11595 [Bacillus amyloliquefaciens TA208] Length = 74 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++ R G++QE L E L + +E G + ++E+L+ I F Sbjct: 5 KLVNARKAKGLTQENLAEKLMYKKSTISNWENGYSTPKMEDAFKVAEILDCDIKELF 61 >gi|326385864|ref|ZP_08207491.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] gi|326209653|gb|EGD60443.1| transcriptional regulator, XRE family [Novosphingobium nitrogenifigens DSM 19370] Length = 76 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 25/69 (36%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG+ R G++QE++ E G + Q + E+G L +S L Sbjct: 7 VGRNFARLRRDQGLTQEQVEERSGFSQQYLSSLERGRRNPTVITLYELSLALGVSHVDLV 66 Query: 75 DVSPTVCSD 83 ++ Sbjct: 67 RPDLEDPTE 75 >gi|313610963|gb|EFR85891.1| transcriptional activator, putative [Listeria monocytogenes FSL F2-208] Length = 300 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 7/113 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+ IR R+ G++Q+++ + I+ +EKG + + S + I + + FF Sbjct: 5 GELIREIRLSKGLTQKEVYTGI-ISRSYAIGFEKGKHEITLSLFEEILARIMVSLDEFFF 63 Query: 75 ---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV--KVRQKIIEL 122 + S T E + +L D ++R+ I+++ Sbjct: 64 IYREFSSTEDDSFWIELVAELHKNDVSGLERLLDKISAKRDDRTELRKAILQI 116 >gi|260174287|ref|ZP_05760699.1| hypothetical protein BacD2_20686 [Bacteroides sp. D2] gi|315922557|ref|ZP_07918797.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696432|gb|EFS33267.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 129 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 47/126 (37%), Gaps = 10/126 (7%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +VG ++ R+ GM QE L LG+ QQV + + L I+ VL Sbjct: 12 RHVGHNLQKIRVYFGMKQEALAADLGVN-QQVISKIEKQEEIEEGLLNQIASVLGISAEV 70 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 D NN+ D + + F + KI+EL ++ SE++ Sbjct: 71 IKDFDVEKA---IYNINNIRDNTFEQGSTSIAQQFNPL------DKIVELYERLLQSERE 121 Query: 133 YRTIEE 138 + + Sbjct: 122 KVELLK 127 >gi|260588634|ref|ZP_05854547.1| DNA-binding protein [Blautia hansenii DSM 20583] gi|260541109|gb|EEX21678.1| DNA-binding protein [Blautia hansenii DSM 20583] Length = 354 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 42/88 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR RR+ ++QE++ LG+T V K+EKG + + L ++ +LE+ ++ Sbjct: 1 MKINETIRQRRIERNLTQEQVANYLGVTAPAVNKWEKGTSYPDITTLPALARILETDLNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG 100 + + N + + +G Sbjct: 61 LLSFKEELTEQEIAIFLNTLSELLEKEG 88 >gi|225164027|ref|ZP_03726313.1| conserved hypothetical protein [Opitutaceae bacterium TAV2] gi|224801370|gb|EEG19680.1| conserved hypothetical protein [Opitutaceae bacterium TAV2] Length = 74 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + + +G IR R+ L ++QE+L E ++ + E+G + L ++ L Sbjct: 4 NQIILRLGAVIRECRVALDLTQEELAEKADLSTNYIGNLERGEQEPSVTALVKVAAGLGI 63 Query: 69 PISFF 73 S Sbjct: 64 TASSL 68 >gi|184154706|ref|YP_001843046.1| hypothetical protein LAF_0230 [Lactobacillus fermentum IFO 3956] gi|183226050|dbj|BAG26566.1| hypothetical phage protein [Lactobacillus fermentum IFO 3956] Length = 370 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 10/79 (12%) Query: 5 KKIPNPVDINV-----GKRIRLRRMILGMSQEKL-----GECLGITFQQVQKYEKGVNRV 54 KK +D+ + RI R G+S KL + L ++ + KYE+GV Sbjct: 15 KKRITDLDMKITDLDMKNRITELREEKGLSMRKLSKSLKEKGLSLSTDSLSKYERGVRNP 74 Query: 55 GASRLQHISEVLESPISFF 73 + ++E + P+ + Sbjct: 75 KIENWEKLAEFFKVPVDYL 93 >gi|149189093|ref|ZP_01867381.1| Putative transcriptional regulator [Vibrio shilonii AK1] gi|148837056|gb|EDL54005.1| Putative transcriptional regulator [Vibrio shilonii AK1] Length = 100 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 15/110 (13%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRL 59 KK P P R++ R ++Q+ LG +G+ + YEKG + L Sbjct: 2 EKKNPIP------SRLKSARKKAKITQKDLGVKIGMEESSASGRMNHYEKGRHVPDIGTL 55 Query: 60 QHISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + +++ L+ P+ +FF + +++E ++ ++ + L L + Sbjct: 56 RRMAKELDVPLCYFFCDNE-----LTAEIACAVEKMTDEERLALLEQIKR 100 >gi|149006628|ref|ZP_01830327.1| transcriptional activator, Rgg/GadR/MutR family protein [Streptococcus pneumoniae SP18-BS74] gi|307127920|ref|YP_003879951.1| transcriptional activator [Streptococcus pneumoniae 670-6B] gi|147761926|gb|EDK68889.1| transcriptional activator, Rgg/GadR/MutR family protein [Streptococcus pneumoniae SP18-BS74] gi|306484982|gb|ADM91851.1| transcriptional activator [Streptococcus pneumoniae 670-6B] gi|332072878|gb|EGI83359.1| transcriptional activator, Rgg/GadR/MutR family, C-terminal domain protein [Streptococcus pneumoniae GA17545] Length = 283 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+ + R G++Q+ + + I + E G + + E ++ ++ F Sbjct: 6 GQIFKEIRKSKGLTQQDVCGQV-IHRTTLTNIEHGKVIPSFENMVFLLEQIDMSLAEFKY 64 Query: 75 ---DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + P+ DI E N F T ++L Sbjct: 65 ICNEYHPSKRRDIIVESQNPSTFQDTRKMVELTE 98 >gi|194466584|ref|ZP_03072571.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] gi|194453620|gb|EDX42517.1| transcriptional regulator, XRE family [Lactobacillus reuteri 100-23] Length = 102 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 13/93 (13%), Positives = 33/93 (35%), Gaps = 2/93 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ G S +K+ E GI + ++ L +++VL + + Sbjct: 6 RIKELSKKRGWSLQKVAEEAGIGINSIYRW--NSKTPSTQSLNKVAKVLGVSADYLLGET 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + ++++ V + + Y ++ Sbjct: 64 EKKKTADLADKDTVFTYEGREIPPEDLEYMKRL 96 >gi|28870351|ref|NP_792970.1| transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28853598|gb|AAO56665.1| transcriptional regulator, putative [Pseudomonas syringae pv. tomato str. DC3000] Length = 149 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 4/112 (3%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R++ R+ L +SQ LG G+ YE GV A L I++ +++ Sbjct: 4 IGPRLKKERLRLKISQSALGAIGGVETNAQGNYENGVRSPRADYLSRIAD-AGVNVTYVV 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD-VKVRQKIIELVRS 125 +++ + S P + R + + + + L+ S Sbjct: 63 TGFSDAAPTPTAQATTTRE--SDPLKRVVARLHSNLHNVTQNIYHVTRLMES 112 >gi|77412886|ref|ZP_00789090.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] gi|77161026|gb|EAO72133.1| transcriptional regulator, Cro/CI family [Streptococcus agalactiae 515] Length = 117 Score = 41.3 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G+SQ++L + +G+ Q + E S L I+ + F Sbjct: 8 NLIRLRKQKGLSQKELAKKIGMLPQTISNIENQKGYPTFSNLDKIARYFNVSATELF 64 >gi|303253615|ref|ZP_07339753.1| hypothetical protein APP2_0803 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307245786|ref|ZP_07527872.1| hypothetical protein appser1_9890 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248022|ref|ZP_07530051.1| hypothetical protein appser2_10040 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307254759|ref|ZP_07536586.1| hypothetical protein appser9_9980 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259199|ref|ZP_07540929.1| hypothetical protein appser11_9970 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|302647535|gb|EFL77753.1| hypothetical protein APP2_0803 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306853488|gb|EFM85707.1| hypothetical protein appser1_9890 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855420|gb|EFM87594.1| hypothetical protein appser2_10040 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306862285|gb|EFM94252.1| hypothetical protein appser9_9980 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866866|gb|EFM98724.1| hypothetical protein appser11_9970 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 150 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 6/127 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R LG++Q + G++ + KYE+GV G+ L ++E + I + F + Sbjct: 10 RLKNERNRLGLTQADIANKCGVSREMWGKYERGVALAGSEVLFSLTE-IGVDIGYLFSGT 68 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTIE 137 +V + S G + + +L++S ++ KK + Sbjct: 69 RSVPLTENEISLLDDYRQSNEQGKAAIE-----QTAQALSAVNKLLQSSENTTKKQSSPH 123 Query: 138 EECMVEQ 144 E + + Sbjct: 124 TEMHISE 130 >gi|289444046|ref|ZP_06433790.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289416965|gb|EFD14205.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] Length = 324 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 42/116 (36%), Gaps = 6/116 (5%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G+++ LG+ +V +E G ++L+ +EV + ++ FF P Sbjct: 29 LRWARESCGLTEVAAARKLGLPDDRVAAWEVGEVVPTIAQLRKAAEVYKRSLAVFFLSEP 88 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 D + + S L+ F + + + + +E + Sbjct: 89 PEGFDTLRDFRRLDGAASGQWTPGLHEEFRRAHTQR------DFALELADAEDREI 138 >gi|259907093|ref|YP_002647449.1| transcriptional regulator [Erwinia pyrifoliae Ep1/96] gi|224962715|emb|CAX54170.1| transcriptional regulator [Erwinia pyrifoliae Ep1/96] gi|283476894|emb|CAY72745.1| putative transcriptional regulator [Erwinia pyrifoliae DSM 12163] Length = 85 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 35/70 (50%), Gaps = 4/70 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R+ G+SQ+KLG GI + +YE+G++ + ++ VL+ P + Sbjct: 4 HRLKEARLKKGLSQQKLGVLAGIDEATASARMNQYERGIHVPDFELVCRLAAVLDVPSCY 63 Query: 73 FFDVSPTVCS 82 + + + + Sbjct: 64 LYTLEDELAA 73 >gi|210611297|ref|ZP_03288852.1| hypothetical protein CLONEX_01042 [Clostridium nexile DSM 1787] gi|210152061|gb|EEA83068.1| hypothetical protein CLONEX_01042 [Clostridium nexile DSM 1787] Length = 139 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 16/124 (12%), Positives = 49/124 (39%), Gaps = 5/124 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLESPISFFFDV 76 +++ +R+ ++Q +L E + +T + +Q YE G + ++ +++ L + + Sbjct: 6 KLKEKRLEANLTQVQLAEKVSVTPRTIQHYELGTRKPTKLDIVEKLAKALNTTPEYLLGQ 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIELVRS--IVSSEKK 132 + + + + ++ F ++ D + + L + I ++ K Sbjct: 66 NGLLVVAAHEQGGSKAARDIDELVSEVTGMFAGGRLSDEALDGAMKALNDAYWIAKAKNK 125 Query: 133 YRTI 136 T Sbjct: 126 KYTP 129 >gi|241207040|ref|YP_002978136.1| MerR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860930|gb|ACS58597.1| transcriptional regulator, MerR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 269 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 1/102 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+++R R G + +++ +G+T + E+ V L ++E + +S Sbjct: 90 DTGLGRKLRSLRHASGKTLDQVAGDIGVTSSTLSTLERTSQGVSFKTLHDLAEYYGTTVS 149 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDD 112 S +TP +QL ++ D Sbjct: 150 RLSGEESGEVSAHVRAGEWRAWPETTPGVAVQLLAEGRRMMD 191 >gi|160916078|ref|ZP_02078285.1| hypothetical protein EUBDOL_02105 [Eubacterium dolichum DSM 3991] gi|158431802|gb|EDP10091.1| hypothetical protein EUBDOL_02105 [Eubacterium dolichum DSM 3991] Length = 129 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 34/69 (49%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R G +QE+L L + Q V K+EKG++ A L I+++L++ +S + + Sbjct: 1 MRKAKGYTQEELAIKLNVVRQTVSKWEKGLSVPDAHILSKIADILDTKVSILLGSTISDE 60 Query: 82 SDISSEENN 90 D ++ Sbjct: 61 IDENAVAEQ 69 >gi|16079687|ref|NP_390511.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|1176725|sp|P45903|YQAF_BACSU RecName: Full=Uncharacterized HTH-type transcriptional regulator yqaF gi|1217834|dbj|BAA06919.1| ORF8 [Bacillus subtilis] gi|1303724|dbj|BAA12380.1| YqaF [Bacillus subtilis] gi|2635079|emb|CAB14575.1| putative transcriptional regulator; skin element [Bacillus subtilis subsp. subtilis str. 168] Length = 76 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R+ G +QE++ + I E G + + I E L + FF+ Sbjct: 6 LKKNRLEKGFTQEEVAKAAQIGRAYYTMIENGTRKPSVIVSKKIGEKLGFDWTIFFED 63 >gi|329666818|gb|AEB92766.1| putative transcriptional regulator [Lactobacillus johnsonii DPC 6026] Length = 272 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 40/107 (37%), Gaps = 12/107 (11%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R LG++QE++ + + I K E+G+ L I IS Sbjct: 1 MKIGQALKEERQKLGLTQEQMIKGI-INKGHYSKIERGLESTSIDTLFRIILKHHIDISD 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 FF+ + +L + + + R+KI Sbjct: 60 FFN-----------KVKYDYYTSEDKKAEELKQKMLHAFNNNQREKI 95 >gi|325958946|ref|YP_004290412.1| XRE family transcriptional regulator [Methanobacterium sp. AL-21] gi|325330378|gb|ADZ09440.1| transcriptional regulator, XRE family [Methanobacterium sp. AL-21] Length = 64 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R + ++QE L + + +T Q + EK + I++ I F Sbjct: 3 NKLKVYRAMNDLTQEDLAKEIKVTRQTIISIEKQKYDPSLTLAFKIAKFFNVHIEDIFFD 62 Query: 77 SP 78 Sbjct: 63 EE 64 >gi|284802532|ref|YP_003414397.1| hypothetical protein LM5578_2288 [Listeria monocytogenes 08-5578] gi|284995674|ref|YP_003417442.1| hypothetical protein LM5923_2239 [Listeria monocytogenes 08-5923] gi|284058094|gb|ADB69035.1| hypothetical protein LM5578_2288 [Listeria monocytogenes 08-5578] gi|284061141|gb|ADB72080.1| hypothetical protein LM5923_2239 [Listeria monocytogenes 08-5923] Length = 423 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R ++ + + + + I+ + E G+ L HI+ L+ P Sbjct: 4 IGLRIKNIRKEKKLTLKDVAQGI-ISVPYLANIENGIKVASLETLIHIARRLDIPEEILL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + E + + + + + ++ +I + + Sbjct: 63 MSEDEENRALLKELDEIFELLVCSNLKEIESRLEKIAENIDLR 105 >gi|302518956|ref|ZP_07271298.1| DNA-binding protein [Streptomyces sp. SPB78] gi|302427851|gb|EFK99666.1| DNA-binding protein [Streptomyces sp. SPB78] Length = 287 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 15/127 (11%), Positives = 42/127 (33%), Gaps = 5/127 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF-- 73 G +R R G++Q +L + ++ + ++E G + + + + L++ SF+ Sbjct: 18 GGELRRLREASGLTQAELAAQVYVSASYIAQFEAGRRKPNEDVARRLDDALKTGGSFWRI 77 Query: 74 ---FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSE 130 + + ++ + R + + I+ R + + Sbjct: 78 VHKLIEDQGPFPPFALPFFEMEREATSCWAFEDTRIPGILQTRDYAEAILRAYRPFAAPD 137 Query: 131 KKYRTIE 137 T Sbjct: 138 DDEITKL 144 >gi|227357903|ref|ZP_03842249.1| hypothetical protein HMPREF0693_3140 [Proteus mirabilis ATCC 29906] gi|227161876|gb|EEI46900.1| hypothetical protein HMPREF0693_3140 [Proteus mirabilis ATCC 29906] Length = 101 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 ++ +G+ I+ R +S +L + GI+ Q + + E+G + S L + + P Sbjct: 2 DINKILGREIKFLRKRSLLSGCELAKAFGISQQHLSRIERGEVQWSVSFLLRVCAFFDIP 61 Query: 70 ISFFFDVSPTVCSDISSEENNVMDF 94 + F + S S +NN+ F Sbjct: 62 MIHFIKLIEKETSSFSIVDNNLCQF 86 >gi|154505562|ref|ZP_02042300.1| hypothetical protein RUMGNA_03101 [Ruminococcus gnavus ATCC 29149] gi|153794220|gb|EDN76640.1| hypothetical protein RUMGNA_03101 [Ruminococcus gnavus ATCC 29149] Length = 107 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 1/92 (1%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R +SQ++L LGI+ V YE+G L I+++ + + S Sbjct: 8 LKTLRTDKHLSQQELATRLGISKSAVSMYEQGRREPDFDILNKIADIFQVDADYLLGRSS 67 Query: 79 TVCSDISSEENNVMDFIS-TPDGLQLNRYFIQ 109 +D T L +IQ Sbjct: 68 LSHEPEPVTIAAHLDTSDLTQAELDDVEKYIQ 99 >gi|154500601|ref|ZP_02038639.1| hypothetical protein BACCAP_04274 [Bacteroides capillosus ATCC 29799] gi|150270490|gb|EDM97799.1| hypothetical protein BACCAP_04274 [Bacteroides capillosus ATCC 29799] Length = 75 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G I R G+SQ +L E + ++ + + E V + I + LE P Sbjct: 10 KYLGLNIAYYRKERGLSQSRLAERINVSRTHMSRIETADCAVSLDVVFAICDALEVPPEK 69 Query: 73 FF 74 F Sbjct: 70 LF 71 >gi|170743046|ref|YP_001771701.1| XRE family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197320|gb|ACA19267.1| transcriptional regulator, XRE family [Methylobacterium sp. 4-46] Length = 206 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 32/91 (35%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ R +S +L E G+ + + E+ + + +S+ L+ I Sbjct: 23 QLGKTIQRLRKAYNLSLSELAEQSGVAKSIISQIERNETNPTLATIWRLSQALDVSIERV 82 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S + +S ++L Sbjct: 83 LATGDEEPFIEKSSRADTPILVSEDGKVRLA 113 >gi|94972375|ref|YP_595594.1| PbsX family transcriptional regulator [Lawsonia intracellularis PHE/MN1-00] gi|94731912|emb|CAJ53901.1| transcriptional regulator, PbsX family [Lawsonia intracellularis PHE/MN1-00] Length = 93 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 31/85 (36%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + ++G IR R ++Q +LGE LG+ + + E+G L S + Sbjct: 1 MAKKFFKSIGLVIRNYRKTAKLTQARLGEKLGVKGNYIGEIERGEEHPSVEMLVKFSLHM 60 Query: 67 ESPISFFFDVSPTVCSDISSEENNV 91 + D + +E+ Sbjct: 61 KVRPGELLDTIVEQEVESGNEDFPW 85 >gi|15903593|ref|NP_359143.1| hypothetical protein spr1550 [Streptococcus pneumoniae R6] gi|116516974|ref|YP_816973.1| transcriptional activator, Rgg/GadR/MutR family protein [Streptococcus pneumoniae D39] gi|148989361|ref|ZP_01820729.1| transcriptional activator, Rgg/GadR/MutR family protein [Streptococcus pneumoniae SP6-BS73] gi|149002001|ref|ZP_01826955.1| transcriptional activator, Rgg/GadR/MutR family protein [Streptococcus pneumoniae SP14-BS69] gi|168493613|ref|ZP_02717756.1| transcriptional activator, Rgg/GadR/MutR family, C- domain [Streptococcus pneumoniae CDC3059-06] gi|221232442|ref|YP_002511595.1| DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225855136|ref|YP_002736648.1| transcriptional activator, Rgg/GadR/MutR family, C- domain protein [Streptococcus pneumoniae JJA] gi|237649247|ref|ZP_04523499.1| transcriptional activator, Rgg/GadR/MutR family, C- domain protein [Streptococcus pneumoniae CCRI 1974] gi|237822007|ref|ZP_04597852.1| transcriptional activator, Rgg/GadR/MutR family, C- domain protein [Streptococcus pneumoniae CCRI 1974M2] gi|15459215|gb|AAL00354.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116077550|gb|ABJ55270.1| transcriptional activator, Rgg/GadR/MutR family protein [Streptococcus pneumoniae D39] gi|147759810|gb|EDK66800.1| transcriptional activator, Rgg/GadR/MutR family protein [Streptococcus pneumoniae SP14-BS69] gi|147925111|gb|EDK76191.1| transcriptional activator, Rgg/GadR/MutR family protein [Streptococcus pneumoniae SP6-BS73] gi|183576475|gb|EDT97003.1| transcriptional activator, Rgg/GadR/MutR family, C- domain [Streptococcus pneumoniae CDC3059-06] gi|220674903|emb|CAR69478.1| putative DNA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225722302|gb|ACO18155.1| transcriptional activator, Rgg/GadR/MutR family, C- domain protein [Streptococcus pneumoniae JJA] gi|332074044|gb|EGI84522.1| transcriptional activator, Rgg/GadR/MutR family, C-terminal domain protein [Streptococcus pneumoniae GA41301] Length = 283 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF- 74 G+ + R G++Q+ + + I + E G + + E ++ ++ F Sbjct: 6 GQIFKEIRKSKGLTQQDVCGQV-IHRTTLTNIEHGKVIPSFENMVFLLEQIDMSLAEFKY 64 Query: 75 ---DVSPTVCSDISSEENNVMDFISTPDGLQLNR 105 + P+ DI E N F T ++L Sbjct: 65 ICNEYHPSKRRDIIVESQNPSTFQDTRKMVELTE 98 >gi|313206727|ref|YP_004045904.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|312446043|gb|ADQ82398.1| helix-turn-helix domain protein [Riemerella anatipestifer DSM 15868] gi|315023798|gb|EFT36800.1| transcriptional regulator [Riemerella anatipestifer RA-YM] gi|325335832|gb|ADZ12106.1| Helix-turn-helix type 3 [Riemerella anatipestifer RA-GD] Length = 75 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLG--ITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +GK+++ R G+SQ +L + I + + E G L I+E LE Sbjct: 6 ILKKIGKKVKEMRESKGISQVELVGKMQGEIDPTNISRIESGRTNPTIYTLYRIAEALEI 65 Query: 69 PISFFFDVS 77 IS D+ Sbjct: 66 KISDLVDIE 74 >gi|310766294|gb|ADP11244.1| transcriptional regulator [Erwinia sp. Ejp617] Length = 85 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 4/67 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLESPISF 72 R++ R+ G+SQ+KLG GI + +YE+G++ + ++ VL+ P + Sbjct: 4 HRLKEARLKKGLSQQKLGVLAGIDEATASARMNQYERGIHVPDFELVCRLAAVLDVPSCY 63 Query: 73 FFDVSPT 79 + + Sbjct: 64 LYTLEDE 70 >gi|304413958|ref|ZP_07395375.1| putative prophage repressor CI [Candidatus Regiella insecticola LSR1] gi|304283678|gb|EFL92073.1| putative prophage repressor CI [Candidatus Regiella insecticola LSR1] Length = 215 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 32/72 (44%), Gaps = 1/72 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++ R+R RR LG++Q+ L + + + Q +++ E G + L ++ L + + Sbjct: 1 MSIADRVRSRRTELGLTQKDLAKRVDTSQQAIEQLENGKTK-RPRYLPELANALNCQLYW 59 Query: 73 FFDVSPTVCSDI 84 + Sbjct: 60 LLNGGEHKDKPN 71 >gi|296271491|ref|YP_003654123.1| helix-turn-helix domain-containing protein [Thermobispora bispora DSM 43833] gi|296094278|gb|ADG90230.1| helix-turn-helix domain protein [Thermobispora bispora DSM 43833] Length = 442 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 9/132 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G R+R R+ MSQ +L ++ V E G + + ++E L F Sbjct: 7 IGDRVRGLRLSRRMSQAQL-AGPDLSDSYVSLIESGKRTPTPAVARLLAERLGCTTEFLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNR-YFIQIDDVKVR-------QKIIELVRSI 126 + + + F I + + R++ Sbjct: 66 HGIEPRQRIDTELSLRHAELELHHGSPAVAADRFKAIMQASDGDNATLATRAHVGFARAL 125 Query: 127 VSSEKKYRTIEE 138 + K + +EE Sbjct: 126 EAQGKIEQAVEE 137 >gi|260432990|ref|ZP_05786961.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] gi|260416818|gb|EEX10077.1| transcriptional regulator, XRE family [Silicibacter lacuscaerulensis ITI-1157] Length = 431 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 3/129 (2%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D G RIR RR+I G+ Q +L +GI+ + E R+G L I+ L S Sbjct: 3 DTLTGSRIRERRLISGLKQAQLARQVGISASYLNLIEHNRRRIGGKLLVDIASALSVEPS 62 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 I++ D + + F + ++ R +VS E+ Sbjct: 63 VLTQGVEATL--IAALREAAADAVGQEAEVDALDEFAGRF-PGWAGVLAQMHRRVVSLER 119 Query: 132 KYRTIEEEC 140 T+ + Sbjct: 120 TVETLSDRL 128 >gi|257790856|ref|YP_003181462.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|257474753|gb|ACV55073.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] Length = 261 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 39/111 (35%), Gaps = 8/111 (7%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R +SQ +L LG++ Q V K+E + +L + ++ E + Sbjct: 6 NLQHLRGTRDLSQAQLATLLGVSRQSVAKWEAEKSYPEMDKLIKLCDLFECSLDDLVRGD 65 Query: 78 PTV-CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIV 127 T + + +TP D +R++ ++ + Sbjct: 66 LTGCATANEAIVEAEPASAATPVDKDGY-------DEHMRRRAWDVAAGVA 109 >gi|258509881|ref|YP_003172632.1| transcriptional regulator [Lactobacillus rhamnosus GG] gi|257149808|emb|CAR88781.1| Transcriptional regulator [Lactobacillus rhamnosus GG] gi|259651145|dbj|BAI43307.1| phage transcriptional regulator [Lactobacillus rhamnosus GG] Length = 203 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 4/92 (4%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGIT---FQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 +G+RI+ R+ G + E+ +G+T V ++E+G++ A ++ I+ + Sbjct: 13 LGERIKSIRISKGETMEEFALSVGLTSSGKSAVSRWERGLSAPSADTMKKIANHGGISVQ 72 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQL 103 F P D+ ++ + L Sbjct: 73 FLVTGKPA-FEDLPEDQQMELRKQRDEWLHNL 103 >gi|228960769|ref|ZP_04122407.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048209|ref|ZP_04193778.1| Transcriptional regulator, Xre [Bacillus cereus AH676] gi|229129788|ref|ZP_04258755.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] gi|229147062|ref|ZP_04275422.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228636450|gb|EEK92920.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-ST24] gi|228653704|gb|EEL09575.1| Transcriptional regulator, Xre [Bacillus cereus BDRD-Cer4] gi|228723196|gb|EEL74572.1| Transcriptional regulator, Xre [Bacillus cereus AH676] gi|228798904|gb|EEM45880.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] Length = 194 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 5 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVI 64 Query: 60 QHISEVLESPISFFF 74 I++ L P+S Sbjct: 65 WKITKGLSIPLSRLM 79 >gi|229159144|ref|ZP_04287190.1| transcriptional regulator/TPR domain protein [Bacillus cereus ATCC 4342] gi|228624345|gb|EEK81126.1| transcriptional regulator/TPR domain protein [Bacillus cereus ATCC 4342] Length = 422 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 47/115 (40%), Gaps = 8/115 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+RIR R+ +Q +L + + + + E G + A+ L+ ++E L+ +F Sbjct: 1 MNIGERIRQIRIHKEFTQGELVSGI-CSITYLSRIENGQIKPSAAFLEKVAEKLDIDYNF 59 Query: 73 FFDVSPTVCSDISSEE--NNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 D + D I + L +++ I+ L+++ Sbjct: 60 LVDADYEDIEPMLLAICNKYKKDKIISEKDLSSLELYVR-----DIDSILLLLKA 109 >gi|239820607|ref|YP_002947792.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] gi|239805460|gb|ACS22526.1| transcriptional regulator, XRE family [Variovorax paradoxus S110] Length = 187 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 29/68 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +++ RM +S L + GI+ + + E+G+ L+ ++ L P S FF Sbjct: 6 IGAQVKALRMAADVSGGALAKTSGISASMLSRIERGLVSPSVETLERLANGLGVPASRFF 65 Query: 75 DVSPTVCS 82 Sbjct: 66 GDQARRTD 73 >gi|194015234|ref|ZP_03053850.1| transcriptional regulator [Bacillus pumilus ATCC 7061] gi|194012638|gb|EDW22204.1| transcriptional regulator [Bacillus pumilus ATCC 7061] Length = 156 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 51/121 (42%), Gaps = 12/121 (9%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISF 72 +GK IR+ R G S ++L E ++ + K E+GV+ L+ +S LE + Sbjct: 1 MIGKVIRIYRKRKGYSIQQLAEDAHVSKSYLSKIERGVHKNPSVQFLKKVSSSLEIDLQE 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 FD + D S E+ + I + ++++ +L+++ +++ Sbjct: 61 LFDAETLMFHDSESGEHEWREHIVNAVQSGM-----------PKEELYQLLQTYQKEQEE 109 Query: 133 Y 133 Sbjct: 110 K 110 >gi|169351502|ref|ZP_02868440.1| hypothetical protein CLOSPI_02282 [Clostridium spiroforme DSM 1552] gi|169291724|gb|EDS73857.1| hypothetical protein CLOSPI_02282 [Clostridium spiroforme DSM 1552] Length = 73 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 34/67 (50%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + +++ G+R++ R+ +SQE+L G++ + E+G + ++ I++ L Sbjct: 5 DKIEMRFGQRVKELRLKQNISQEELAFRCGLSKNYISDVERGTRNISLKSIEKIADGLAI 64 Query: 69 PISFFFD 75 I F+ Sbjct: 65 RIKELFE 71 >gi|163796221|ref|ZP_02190182.1| transcriptional regulator, XRE-family protein [alpha proteobacterium BAL199] gi|159178363|gb|EDP62905.1| transcriptional regulator, XRE-family protein [alpha proteobacterium BAL199] Length = 195 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 4/114 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I R G+S ++L G++ + + E+ + + I LE FF Sbjct: 18 GGEILRARKDAGLSLDELARRSGVSKSILSQIERDSTNPTIATVWRICAALERTPESFFR 77 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S ++ +N I + DG R I+ V+ ++ + + Sbjct: 78 SGDEERSGVALLSSNATPEIQSEDGRCRLRILGAIETVER----VQWYEFLAEA 127 >gi|153008179|ref|YP_001369394.1| XRE family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151560067|gb|ABS13565.1| transcriptional regulator, XRE family [Ochrobactrum anthropi ATCC 49188] Length = 130 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 3/120 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFFF 74 G R+R R G++Q+ + L ++ + E G + LQ I Sbjct: 5 GIRLRELREERGVTQKDMAAALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIWDE-- 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + +S + +P +L + + R+ I L I ++ K+ R Sbjct: 63 AEELQNLAAVSHPRVVIDTSGLSPQATELANLLARNIRIIDRETIRHLSEEIEAARKRRR 122 >gi|125717170|ref|YP_001034303.1| XRE family transcriptional regulator [Streptococcus sanguinis SK36] gi|262283414|ref|ZP_06061180.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] gi|125497087|gb|ABN43753.1| Transcriptional regulator, XRE family, putative [Streptococcus sanguinis SK36] gi|262260905|gb|EEY79605.1| XRE family transcriptional regulator [Streptococcus sp. 2_1_36FAA] Length = 116 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 20/121 (16%), Positives = 44/121 (36%), Gaps = 6/121 (4%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + + + ++++ R MSQE+L E + + + + E + L+ + Sbjct: 2 KTKHYLQRYIAQKVKYLRKKQNMSQEELSERADLGLKYINQLENQNVNLTIHSLEKVISA 61 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 LE FF+ D ++ D +S + K + +L+ S Sbjct: 62 LELTPEEFFNF------DSLEASSDPTDSLSLKRVNMKIKQLPVGKREKFLKIFEDLLDS 115 Query: 126 I 126 + Sbjct: 116 L 116 >gi|21323451|dbj|BAB98078.1| Predicted transcriptional regulators [Corynebacterium glutamicum ATCC 13032] Length = 128 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 6/83 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR------VGASRLQHISEVLESPI 70 R++ R + G SQE+L + G++ + YE+ N S + +++ L+ P Sbjct: 19 SRLKKLRTLRGFSQEELADLSGVSRNTISNYERNENNKGNAVDPQLSNIYRLAQALDVPP 78 Query: 71 SFFFDVSPTVCSDISSEENNVMD 93 + I +E +D Sbjct: 79 IALMPAGSVPVAKICVDETAAID 101 >gi|42782413|ref|NP_979660.1| DNA-binding protein [Bacillus cereus ATCC 10987] gi|42738338|gb|AAS42268.1| DNA-binding protein [Bacillus cereus ATCC 10987] Length = 67 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L M+QE L + +G+ + + EKG I++ L+S I F Sbjct: 6 KIKEYRAKLNMTQEDLAKSVGVRRETISHLEKGKYNPSLQLAHDIAKALQSTIDEVFIFE 65 Query: 78 PT 79 Sbjct: 66 DE 67 >gi|30022584|ref|NP_834215.1| transcriptional regulator [Bacillus cereus ATCC 14579] gi|29898142|gb|AAP11416.1| Transcriptional regulator [Bacillus cereus ATCC 14579] Length = 190 Score = 41.3 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 1 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVI 60 Query: 60 QHISEVLESPISFFF 74 I++ L P+S Sbjct: 61 WKITKGLSIPLSRLM 75 >gi|332638795|ref|ZP_08417658.1| transcription regulator [Weissella cibaria KACC 11862] Length = 113 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 4/107 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ GMS +++ + G+ Q Y+ A LQ +++VL + + Sbjct: 5 ERIKEISKTRGMSLQQVAKSAGL--SQNMIYQYKNVNPKAETLQTLADVLGVSVDYLLGN 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR--QKIIE 121 S + ++E + L I + +++ ++I+E Sbjct: 63 SDNMHPVDKTDERDGDLKDYFEKHPILQYDGNPIPEAELKIIRRILE 109 >gi|262370916|ref|ZP_06064240.1| DNA methyltransferase [Acinetobacter johnsonii SH046] gi|262314278|gb|EEY95321.1| DNA methyltransferase [Acinetobacter johnsonii SH046] Length = 68 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 29/59 (49%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G ++R +R + +SQE+L I + + E+G V ++ +++ L+ P+ Sbjct: 9 GLKVREQRKLKKLSQERLALLCNIDRSYMGRIERGEVNVTIEKVYELAKALDIPVINLL 67 >gi|262174076|ref|ZP_06041752.1| hypothetical protein VII_003787 [Vibrio mimicus MB-451] gi|261890256|gb|EEY36244.1| hypothetical protein VII_003787 [Vibrio mimicus MB-451] Length = 226 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 14/101 (13%), Positives = 34/101 (33%), Gaps = 6/101 (5%) Query: 12 DINVGKRIRLRRMILG------MSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 D V R+R R + +++G+ +GI YE + + R++ ++ Sbjct: 5 DAIVASRLRELRKQKEIDDGRPWTADQVGKAIGIGQSTYSNYENEIRKPSLDRIEELAAF 64 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRY 106 + S+ + S + + + +N Sbjct: 65 YKVTPSYLAAFTDHKGSGGGDALHVTPMLTDSAKDVSVNPA 105 >gi|261820979|ref|YP_003259085.1| XRE family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|261604992|gb|ACX87478.1| transcriptional regulator, XRE family [Pectobacterium wasabiae WPP163] Length = 99 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQ----VQKYEKGVNRVGASRLQHISEVLE 67 + +GKR+RL R+ G+ Q +LG G+ + V +YE+ V+ + + VL+ Sbjct: 3 NTVIGKRLRLARVNKGLKQAELGCLAGLDEETASSRVSQYEREVSAPDFGLVSRFATVLD 62 Query: 68 SPISFFFDVSPTVCS 82 P ++F+ V + + Sbjct: 63 VPEAYFYAVDDDLAT 77 >gi|288947745|ref|YP_003445128.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] gi|288898261|gb|ADC64096.1| transcriptional regulator, XRE family [Allochromatium vinosum DSM 180] Length = 143 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 37/106 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + R++ R+ +SQ ++ L ++ V K E G LQ ++++ E S Sbjct: 1 MLHARLKSARIARDLSQAQVATALDLSQGFVSKLESGDKTPSVELLQKLAKLYEVTESHL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + D SS + I+ L + + + Sbjct: 61 LGSTIEGSGDESSGSKTPAEIIALLLDPNLPSGLRALAEDPTINAL 106 >gi|238821343|ref|YP_002925159.1| hypothetical protein PH10_gp26 [Streptococcus phage PH10] gi|238804925|emb|CAY56519.1| hypothetical protein [Streptococcus phage PH10] Length = 112 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 28/69 (40%), Gaps = 1/69 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R LG+S + + G++ + YE+G +++ I++ + ++ Sbjct: 4 RLKELREDLGLSVKDMARDTGVSQNTIHLYERGGY-PSIKQIEMIAKTYDVNPAWLVGWV 62 Query: 78 PTVCSDISS 86 + Sbjct: 63 DDEIQPVIQ 71 >gi|227888718|ref|ZP_04006523.1| XRE family transcriptional regulator [Lactobacillus johnsonii ATCC 33200] gi|227850745|gb|EEJ60831.1| XRE family transcriptional regulator [Lactobacillus johnsonii ATCC 33200] Length = 277 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R LG+SQ ++ +T K E+G++ + AS L I E+ + IS Sbjct: 4 MTIGEALKETRKNLGLSQTEM-AYPILTKSYYSKIERGIHEINASDLIKILEMHDVDISE 62 Query: 73 FF 74 F Sbjct: 63 FL 64 >gi|282600828|ref|ZP_05979816.2| conserved domain protein [Subdoligranulum variabile DSM 15176] gi|282571049|gb|EFB76584.1| conserved domain protein [Subdoligranulum variabile DSM 15176] Length = 82 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +++ R M+Q L E +G++ Q + EKG + + I + L+ + F Sbjct: 23 KLKAARAEKDMTQGALAEAVGVSRQTINAIEKGEYNPTINLCKSICKALDKTLDDLFWEE 82 >gi|222150597|ref|YP_002559750.1| hypothetical protein MCCL_0347 [Macrococcus caseolyticus JCSC5402] gi|222119719|dbj|BAH17054.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 167 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 31/62 (50%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G+ IR R ++ +++ E ++ + + E + + ++ I++ LE S Sbjct: 1 MSIGENIRKIRKERELTLKQVAELTDLSIPFLSQLETNKSDATMATIRLIADALEVHPSQ 60 Query: 73 FF 74 FF Sbjct: 61 FF 62 >gi|307067531|ref|YP_003876497.1| hypothetical protein SPAP_0906 [Streptococcus pneumoniae AP200] gi|306409068|gb|ADM84495.1| hypothetical protein SPAP_0906 [Streptococcus pneumoniae AP200] Length = 133 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 47/125 (37%), Gaps = 3/125 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFFFDV 76 R++ R +SQ + +GI+ + + YE G + I+EV++ ++ + Sbjct: 6 RLKEFREKEKLSQADFAKMIGISTRTLVHYEDGERYPRDVEVYKKIAEVMDCDYNYLLEE 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIELVRSIVSSEKKYR 134 S + + + + L+ F +I D + R+ ++++ + Sbjct: 66 SDEFLNRVYNMGGKKELEKARALTEGLSSLFAGGEISDEDKDAAFEAITRAYWEAKRENK 125 Query: 135 TIEEE 139 + Sbjct: 126 KYGRK 130 >gi|157150101|ref|YP_001451295.1| transcription regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157074895|gb|ABV09578.1| transcription regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 136 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 10/82 (12%), Positives = 27/82 (32%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + ++ R ++QE L E L ++ + ++E L IS + + Sbjct: 1 MKISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + + + Sbjct: 61 LIKEDGRLEKKVIEDSKAKKWH 82 >gi|116694764|ref|YP_728975.1| XRE family transcriptional regulator [Ralstonia eutropha H16] gi|113529263|emb|CAJ95610.1| transcriptional regulator, XRE-family [Ralstonia eutropha H16] Length = 198 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 26/70 (37%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG ++ R +S ++L G++ + + E+ + + L ++ L ++ F Sbjct: 16 AVGMALQALRQQQRLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVNLTDF 75 Query: 74 FDVSPTVCSD 83 Sbjct: 76 LAGGAAERPA 85 >gi|229514886|ref|ZP_04404346.1| hypothetical protein VCB_002537 [Vibrio cholerae TMA 21] gi|229521557|ref|ZP_04410976.1| hypothetical protein VIF_002094 [Vibrio cholerae TM 11079-80] gi|229525929|ref|ZP_04415334.1| hypothetical protein VCA_003576 [Vibrio cholerae bv. albensis VL426] gi|297579049|ref|ZP_06940977.1| fumarate reductase flavoprotein subunit [Vibrio cholerae RC385] gi|229339510|gb|EEO04527.1| hypothetical protein VCA_003576 [Vibrio cholerae bv. albensis VL426] gi|229341655|gb|EEO06658.1| hypothetical protein VIF_002094 [Vibrio cholerae TM 11079-80] gi|229347591|gb|EEO12550.1| hypothetical protein VCB_002537 [Vibrio cholerae TMA 21] gi|297536643|gb|EFH75476.1| fumarate reductase flavoprotein subunit [Vibrio cholerae RC385] Length = 151 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 32/69 (46%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R G+ Q ++ E +G+T Q K+E G N AS ++ ++E+L+ + Sbjct: 9 LKEMREKAGLKQSEVAEYVGVTPQTYMKWENGKNEPKASNIKKLAEILKVSETELCRGER 68 Query: 79 TVCSDISSE 87 D E Sbjct: 69 FHKEDNPIE 77 >gi|306830635|ref|ZP_07463800.1| XRE family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427143|gb|EFM30250.1| XRE family transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 245 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + I R + G++Q++L E +GI + Y K + +Q I++ S Sbjct: 14 IADNITYYRKLNGITQKELAEKIGIKPSTMTDYMKLRSAPSYGIIQKIADYFGVKKSDI 72 >gi|300932634|ref|ZP_07147890.1| XRE family transcriptional regulator [Corynebacterium resistens DSM 45100] Length = 88 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 4/78 (5%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M KK +P+ R+++ R+ MS+ +L + + + Q V E+G + Sbjct: 1 MSPKKKPTSPIH----NRVKVLRIERDMSRAQLAQLIEVNPQTVGALERGDHSPSLDLAF 56 Query: 61 HISEVLESPISFFFDVSP 78 I EV E P+ F Sbjct: 57 RICEVFELPVEMVFSRRE 74 >gi|296284051|ref|ZP_06862049.1| XRE family transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 65 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 24/63 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R SQ +L L ++ Q V E G + IS V + PI F Sbjct: 3 NRLKVLRAERDWSQAELAGRLDVSRQAVNAIETGKHDPSLGLAFKISRVFDMPIETIFLE 62 Query: 77 SPT 79 Sbjct: 63 EED 65 >gi|325681181|ref|ZP_08160711.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] gi|324107103|gb|EGC01389.1| DNA-binding helix-turn-helix protein [Ruminococcus albus 8] Length = 70 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 28/64 (43%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R LG++Q ++G+ G + Q + + E+G + ++++ + F+ Sbjct: 7 LKEMRARLGVNQAEMGKLAGTSRQTISQIERGDYSPSVTLALKLAKICNVKVEDIFEYEE 66 Query: 79 TVCS 82 Sbjct: 67 DNNE 70 >gi|254496262|ref|ZP_05109155.1| irep [Legionella drancourtii LLAP12] gi|254354519|gb|EET13161.1| irep [Legionella drancourtii LLAP12] Length = 89 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Query: 17 KRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGASRLQHISEVLESPISF 72 KR++ R+ G+SQ++LG G+ ++ +YE G + S L+ I+ +L P ++ Sbjct: 8 KRLKEARIAAGLSQKQLGISAGVDEFSASPRINQYETGKHAPDFSTLKRIALILAVPTAY 67 Query: 73 FFDVSPTVCS 82 F+ + Sbjct: 68 FYAEEDELAQ 77 >gi|313116911|ref|YP_004038035.1| transcriptional regulator, XRE family [Halogeometricum borinquense DSM 11551] gi|312294863|gb|ADQ68899.1| transcriptional regulator, XRE family [Halogeometricum borinquense DSM 11551] Length = 65 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 23/61 (37%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R RR M+Q L + + +T Q + E+G ++ + + F + Sbjct: 5 VRERRKAREMTQGDLADAVDVTRQSINAIERGRYNPSLELALKLAVEFDCAVEDLFWLES 64 Query: 79 T 79 Sbjct: 65 D 65 >gi|260588297|ref|ZP_05854210.1| transcriptional regulator, MerR family [Blautia hansenii DSM 20583] gi|260541348|gb|EEX21917.1| transcriptional regulator, MerR family [Blautia hansenii DSM 20583] Length = 129 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 13/98 (13%), Positives = 36/98 (36%), Gaps = 1/98 (1%) Query: 2 VGNKKIPNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + ++ D + +G I+ R GM+QE+L + + + E + Sbjct: 11 MKIERDERRFDFHDIGLAIKRAREASGMTQEQLAYIVDRAPRTIMYNENDGQHPSLNTFY 70 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 + + + + +F S S+ + +++ + Sbjct: 71 QMVTMFDISVDQYFYPSQNSGSECRKRIDAMLNALDER 108 >gi|170759140|ref|YP_001786285.1| HTH DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169406129|gb|ACA54540.1| HTH DNA-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 65 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++ R G++QE+L + L ++ Q + E G I+ I F Sbjct: 3 NKLEEIRKERGINQEELADILEVSRQTISSLENGRYNPSIILAFKIARYFNKNIEDIFIY 62 Query: 77 SPT 79 Sbjct: 63 EEE 65 >gi|154496239|ref|ZP_02034935.1| hypothetical protein BACCAP_00524 [Bacteroides capillosus ATCC 29799] gi|150274322|gb|EDN01399.1| hypothetical protein BACCAP_00524 [Bacteroides capillosus ATCC 29799] Length = 110 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 11/110 (10%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R+RL R +Q ++ L I+ YE G ++ L +++ + + Sbjct: 1 MLSQRLRLLRQSRCKTQSEIAALLSISRSAYALYEAGKRQLNYDSLVTLADFYHISLDYL 60 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 F + S + +L + + D + R+ + L Sbjct: 61 FSRTDVPELQRSFTQEE----------RRLLSRYRAL-DSRGRETVQALA 99 >gi|126641807|ref|YP_001084791.1| hypothetical protein A1S_1762 [Acinetobacter baumannii ATCC 17978] gi|126387691|gb|ABO12189.1| hypothetical protein A1S_1762 [Acinetobacter baumannii ATCC 17978] Length = 360 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 4/105 (3%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++L R +S E+LG+ L T Q V K E G +Q ++ P F + Sbjct: 7 GLELKLLRQFNQLSLEELGQHLECTRQYVHKVETGQTIPSFQFIQQVANFFNVPEELFTN 66 Query: 76 VSPTVCSDISSEENNVMDFISTPDGL----QLNRYFIQIDDVKVR 116 V + + + I+T + + + + D K+R Sbjct: 67 VKSVLQEEQIHFRSLRSTKITTKQVVIARGEYIKRLTEYLDSKLR 111 >gi|121605836|ref|YP_983165.1| anaerobic benzoate catabolism transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120594805|gb|ABM38244.1| transcriptional regulator, XRE family with shikimate kinase activity [Polaromonas naphthalenivorans CJ2] Length = 324 Score = 41.3 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 4/99 (4%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G R+R R GM+++ + ++ + + E G L ++ L ++ Sbjct: 44 ALGDRVRALRARRGMTRKAVSIAADVSERHLANLEYGEGNASILVLLQVARALHCSLAEL 103 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + + E + + + T D L R I I + Sbjct: 104 IGD----VTTSTPEWLLIRELLETRDDASLRRVRIAIGE 138 >gi|324994099|gb|EGC26013.1| transcriptional regulator [Streptococcus sanguinis SK678] gi|332366386|gb|EGJ44137.1| transcriptional regulator [Streptococcus sanguinis SK355] Length = 71 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 26/58 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALF 59 >gi|307824117|ref|ZP_07654344.1| plasmid maintenance system antidote protein, XRE family [Methylobacter tundripaludum SV96] gi|307734901|gb|EFO05751.1| plasmid maintenance system antidote protein, XRE family [Methylobacter tundripaludum SV96] Length = 84 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 33/73 (45%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + +++ VG+ +R+ R + +SQ +L E GI + E +G R + Sbjct: 1 MNEYQIAKKSINVTVGESVRIIRELQELSQNQLAELTGIPQSTISAIEHDKINLGIERAK 60 Query: 61 HISEVLESPISFF 73 +++ L+ + Sbjct: 61 ILAKALKCHPAVL 73 >gi|306831700|ref|ZP_07464857.1| prophage Sa05 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978639|ref|YP_004288355.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304426125|gb|EFM29240.1| prophage Sa05 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178567|emb|CBZ48611.1| transcriptional regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 147 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 29/62 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + ++ R ++QE+L + +T Q V ++E G + L+ +S+ I+ Sbjct: 1 MEIQEVLKNLRDKYQLTQEELAARVLVTRQAVSRWETGETQPNTDTLKLLSKEFNISINT 60 Query: 73 FF 74 Sbjct: 61 LL 62 >gi|300856317|ref|YP_003781301.1| putative DNA-binding protein [Clostridium ljungdahlii DSM 13528] gi|300436432|gb|ADK16199.1| predicted DNA binding protein [Clostridium ljungdahlii DSM 13528] Length = 401 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 32/63 (50%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+R++ R G + + L E +G++ Q + ++E G + L I + L+ P +F++ Sbjct: 19 GERLKSARKYRGKTIKDLAEDIGVSKQAISQFENGKSTPLFETLIKIVDKLKFPREYFYE 78 Query: 76 VSP 78 Sbjct: 79 KDK 81 >gi|300117865|ref|ZP_07055632.1| putative transcriptional regulator PlcR [Bacillus cereus SJ1] gi|298724729|gb|EFI65404.1| putative transcriptional regulator PlcR [Bacillus cereus SJ1] Length = 285 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DVSPTVCSDISSEENNVMDFI 95 +V + + + + + + Sbjct: 65 EVLIYSDIERNKQLKDQIIML 85 >gi|293402278|ref|ZP_06646416.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304385|gb|EFE45636.1| DNA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 153 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 14/110 (12%), Positives = 43/110 (39%), Gaps = 2/110 (1%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R G SQ++L + L +T Q + +E G + + ++ + + D Sbjct: 5 KLIALRKKSGYSQQELADLLSLTRQTISNWENGQSAPTFDKAIELAAIYHISLDDLADNR 64 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRY--FIQIDDVKVRQKIIELVRS 125 + + ++++ + + L+ ++ + K++E+ Sbjct: 65 LEIIAQEKTKKDLHVLQALQGKTVILDCEDFDYMLNSYNEKAKVLEVTEE 114 >gi|268589265|ref|ZP_06123486.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] gi|291315283|gb|EFE55736.1| transcriptional regulator, Cro/CI family [Providencia rettgeri DSM 1131] Length = 76 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 33/70 (47%) Query: 6 KIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 K + N+G+ IR R+ +S ++ + L IT +YE G + A L IS++ Sbjct: 2 KKTTQRNKNLGEYIRNIRVNKKISTHEMADSLNITDSHYNEYESGNASIYADHLIIISKI 61 Query: 66 LESPISFFFD 75 I+ F + Sbjct: 62 FNIHINVFLN 71 >gi|254499432|ref|ZP_05112093.1| transcriptional regulator [Legionella drancourtii LLAP12] gi|254351331|gb|EET10205.1| transcriptional regulator [Legionella drancourtii LLAP12] Length = 83 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 4/76 (5%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITF----QQVQKYEKGVNRVGASRLQHISEVL 66 +D V KR++ R+ +G+SQ+KLG G+ ++ YE G + S L+ I+EVL Sbjct: 1 MDSPVPKRLKEARLAMGISQKKLGIAAGMDEFSASARMNHYEIGRHTPDYSTLKRIAEVL 60 Query: 67 ESPISFFFDVSPTVCS 82 P +FF+ + + Sbjct: 61 SVPTAFFYAEEDELAN 76 >gi|229074061|ref|ZP_04207116.1| HTH-type transcriptional regulator ansR [Bacillus cereus F65185] gi|228709059|gb|EEL61178.1| HTH-type transcriptional regulator ansR [Bacillus cereus F65185] Length = 128 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 4/122 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R S ++ + LGI YE G L I+++ ++ + + Sbjct: 6 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYILGR 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + + + L + ++ I VRS K Sbjct: 66 IEHSHQNKDVID---ITRLLNDPDSTLLVDGEALSTEEIID-FIAFVRSKRELSSKRIEN 121 Query: 137 EE 138 E Sbjct: 122 IE 123 >gi|269129041|ref|YP_003302411.1| XRE family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313999|gb|ACZ00374.1| transcriptional regulator, XRE family [Thermomonospora curvata DSM 43183] Length = 247 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 12/95 (12%), Positives = 36/95 (37%), Gaps = 7/95 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 +PN +R+R + G++ L E +G+ + V+++ ++ L Sbjct: 1 MPN-------ERLRAALLERGLTAAALAEAIGVDPKTVERWITKGRTPYRRHRFAVASQL 53 Query: 67 ESPISFFFDVSPTVCSDISSEENNVMDFISTPDGL 101 ++ + + + S+ E+ ++ + Sbjct: 54 GVDETYLWPEALSRQQMASASESEIVTVYPHRWSV 88 >gi|218704103|ref|YP_002411622.1| putative transcriptional regulator from phage origin [Escherichia coli UMN026] gi|218431200|emb|CAR12076.1| putative transcriptional regulator from phage origin [Escherichia coli UMN026] gi|323976890|gb|EGB71978.1| peptidase S24 [Escherichia coli TW10509] Length = 230 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 1/101 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPIS 71 +N+G R+R R M L E +G+ + + E G + + +I++ L I+ Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQTLSNIAKSLGVDIA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 F + + + N + + +++ + Sbjct: 61 DLFTSALKSNTVYKNSNNEDVAQVKDVFRIEMLDISASAGN 101 >gi|148266629|ref|YP_001245572.1| XRE family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150392669|ref|YP_001315344.1| hypothetical protein SaurJH1_0195 [Staphylococcus aureus subsp. aureus JH1] gi|257793983|ref|ZP_05642962.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258408610|ref|ZP_05680895.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258421201|ref|ZP_05684128.1| transcriptional regulator [Staphylococcus aureus A9719] gi|258438949|ref|ZP_05690040.1| transcriptional regulator [Staphylococcus aureus A9299] gi|258444184|ref|ZP_05692518.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258447065|ref|ZP_05695215.1| transcriptional regulator [Staphylococcus aureus A6300] gi|258448523|ref|ZP_05696636.1| transcriptional regulator [Staphylococcus aureus A6224] gi|258455756|ref|ZP_05703711.1| transcriptional regulator [Staphylococcus aureus A5937] gi|282893361|ref|ZP_06301594.1| transcriptional regulator [Staphylococcus aureus A8117] gi|282926312|ref|ZP_06333944.1| transcriptional regulator [Staphylococcus aureus A10102] gi|295405474|ref|ZP_06815284.1| transcriptional regulator [Staphylococcus aureus A8819] gi|296274946|ref|ZP_06857453.1| helix-turn-helix domain-containing protein [Staphylococcus aureus subsp. aureus MR1] gi|297209290|ref|ZP_06925689.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244811|ref|ZP_06928691.1| transcriptional regulator [Staphylococcus aureus A8796] gi|300911288|ref|ZP_07128737.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] gi|147739698|gb|ABQ47996.1| transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|149945121|gb|ABR51057.1| helix-turn-helix domain protein [Staphylococcus aureus subsp. aureus JH1] gi|257787955|gb|EEV26295.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257840619|gb|EEV65078.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257842625|gb|EEV67047.1| transcriptional regulator [Staphylococcus aureus A9719] gi|257847825|gb|EEV71821.1| transcriptional regulator [Staphylococcus aureus A9299] gi|257850443|gb|EEV74391.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257854078|gb|EEV77031.1| transcriptional regulator [Staphylococcus aureus A6300] gi|257858154|gb|EEV81042.1| transcriptional regulator [Staphylococcus aureus A6224] gi|257861968|gb|EEV84741.1| transcriptional regulator [Staphylococcus aureus A5937] gi|282591641|gb|EFB96712.1| transcriptional regulator [Staphylococcus aureus A10102] gi|282764047|gb|EFC04174.1| transcriptional regulator [Staphylococcus aureus A8117] gi|294969549|gb|EFG45568.1| transcriptional regulator [Staphylococcus aureus A8819] gi|296886223|gb|EFH25157.1| transcriptional regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178328|gb|EFH37575.1| transcriptional regulator [Staphylococcus aureus A8796] gi|300887467|gb|EFK82663.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH70] Length = 65 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R+ L M+Q++L +G+T Q + EKGV+ S ++I VL + F Sbjct: 3 NNLKIARVSLSMTQKELANKVGVTRQTISLIEKGVHNPSLSLCKNICSVLNKNLDEIFGE 62 Query: 77 SP 78 P Sbjct: 63 KP 64 >gi|73661492|ref|YP_300273.1| transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494007|dbj|BAE17328.1| putative transcriptional regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 181 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 29/78 (37%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 + V K I R +S +K+ G++ + + EKG + + L I+ L + Sbjct: 4 IQSIVAKNIADYRKKHQLSLDKVANATGVSKNMLSQIEKGQSNPTITTLWKIANGLHISL 63 Query: 71 SFFFDVSPTVCSDISSEE 88 S S I + Sbjct: 64 SQLTSTSNDTIDFIDESD 81 >gi|94313728|ref|YP_586937.1| putative DNA-binding transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357580|gb|ABF11668.1| putative DNA-binding transcriptional regulator, Helix-turn-helix motif [Cupriavidus metallidurans CH34] Length = 203 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 26/61 (42%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG ++ R +S ++L G++ + + E+ + + L ++ L ++ F Sbjct: 20 AVGSALQALRQSQQLSLDELSRRAGVSKSMLSQIERNLANPTVAVLWRLANALGVSLTDF 79 Query: 74 F 74 Sbjct: 80 L 80 >gi|330718310|ref|ZP_08312910.1| XRE-family DNA-binding domain-containing protein [Leuconostoc fallax KCTC 3537] Length = 302 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 28/66 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +++ R +SQ L + + +T Q V K+E G +L ++E+L ++ Sbjct: 7 EQLITLRQKKKLSQHALAQKIFVTRQSVSKWENGDAEPSIDKLISLAEILNVDLNHLLIG 66 Query: 77 SPTVCS 82 + Sbjct: 67 QQSTAD 72 >gi|271502478|ref|YP_003335504.1| XRE family transcriptional regulator [Dickeya dadantii Ech586] gi|270346033|gb|ACZ78798.1| transcriptional regulator, XRE family [Dickeya dadantii Ech586] Length = 110 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 4/70 (5%) Query: 17 KRIRLRRMILGMSQEKLGECL----GITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +R++ R++ G+SQ+ LG + ++ +YEKGV+ + ++E L P+++ Sbjct: 13 QRLKDARLLRGLSQKGLGIAAGIDEFVASARINRYEKGVHEANIVTAKRLAEALNVPLAY 72 Query: 73 FFDVSPTVCS 82 F+ + Sbjct: 73 FYADDDNLAK 82 >gi|254385813|ref|ZP_05001133.1| transcriptional regulatory protein [Streptomyces sp. Mg1] gi|194344678|gb|EDX25644.1| transcriptional regulatory protein [Streptomyces sp. Mg1] Length = 192 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 8/72 (11%), Positives = 30/72 (41%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 + + ++ + ++ R G++ + L G++ V + E+ + +++ L Sbjct: 4 DQLSQSLARNLKHWRTRRGLTLDGLAARAGLSRGMVIQVEQARTNPSLETMVKLADALGV 63 Query: 69 PISFFFDVSPTV 80 ++ D++ Sbjct: 64 DMTALLDLNQEP 75 >gi|121607191|ref|YP_994998.1| XRE family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gi|121551831|gb|ABM55980.1| transcriptional regulator, XRE family [Verminephrobacter eiseniae EF01-2] Length = 229 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 +D+ +G+++R RR LG+ +++ GI+ + + E+G+ + L +++ L PI Sbjct: 42 IDLWLGEQLRRRRQALGLPLQQVARACGISVSLLSQLERGLRSISMRTLGALAQELRLPI 101 Query: 71 SFF 73 Sbjct: 102 ETL 104 >gi|11995223|ref|NP_072081.1| PvuIIC [Proteus vulgaris] gi|455322|gb|AAA96335.1| PvuIIC [Proteus vulgaris] Length = 84 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 30/81 (37%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + P + + K ++ R LG+SQE L + +GI + E+ + ++ Sbjct: 1 MSRNTNPLSARLTLAKNVKKMRGELGLSQESLADLVGIHRTYIGSIERAERNISIDNIER 60 Query: 62 ISEVLESPISFFFDVSPTVCS 82 I+ L IS Sbjct: 61 IANALNVSISILMMEHENESP 81 >gi|54297035|ref|YP_123404.1| hypothetical protein lpp1077 [Legionella pneumophila str. Paris] gi|53750820|emb|CAH12228.1| hypothetical protein lpp1077 [Legionella pneumophila str. Paris] Length = 84 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 31/77 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI R G++ + L E G+ ++ +E+G G + +S L+ S+ Sbjct: 5 KIIGSRIMQARKTNGLTIKVLAERTGLGAARIGNWEQGTRTPGPEEAKILSRELKVAASW 64 Query: 73 FFDVSPTVCSDISSEEN 89 ++ + + Sbjct: 65 ILCLTDNPLGEFLDNSD 81 >gi|89100997|ref|ZP_01173841.1| hypothetical protein B14911_09197 [Bacillus sp. NRRL B-14911] gi|89084293|gb|EAR63450.1| hypothetical protein B14911_09197 [Bacillus sp. NRRL B-14911] Length = 177 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 13/130 (10%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVC 81 R ++Q + + + I + E G +++++VL+ S Sbjct: 9 LRKNKNLTQADVADSIFIDRAYYSQIESGTRNPSVDISRNLAKVLDINPSLLLSDLAAFQ 68 Query: 82 SD--------ISSEENNVMDFISTPDGLQLNRYFIQIDDVKV-----RQKIIELVRSIVS 128 S+ + +I + FI D ++ QK+I L + ++ Sbjct: 69 EVFTRTKCMLAHSDLDLRYTWIFDSANQEEVNQFIGARDDELSFCIDSQKLISLKQRVLD 128 Query: 129 SEKKYRTIEE 138 +++ T E Sbjct: 129 TKETSGTFAE 138 >gi|299144547|ref|ZP_07037626.1| HTH DNA-binding protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517635|gb|EFI41375.1| HTH DNA-binding protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 73 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 22/59 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ R I G++QE+ + L ++ Q + E G I+ I F Sbjct: 5 NKLDELRKINGLTQEEFAKELRVSRQTISAIENGKYNPSLDLAFEIALYFNKTIEEVFT 63 >gi|294678447|ref|YP_003579062.1| XRE family transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294477267|gb|ADE86655.1| transcriptional regulator, XRE family [Rhodobacter capsulatus SB 1003] Length = 249 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R+ R +SQ LG LG++ + E G + + LQ ++E + Sbjct: 6 GLRLSSWRKEQKLSQRALGSVLGVSQGYISDIESGRSEPSRNFLQALTERFGVSADWILY 65 Query: 76 V 76 Sbjct: 66 G 66 >gi|257873664|ref|ZP_05653317.1| predicted protein [Enterococcus casseliflavus EC10] gi|257807828|gb|EEV36650.1| predicted protein [Enterococcus casseliflavus EC10] Length = 95 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 24/64 (37%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R + R G+S +++ + L +++ YE G L H + + + + + Sbjct: 28 RFKFLREERGLSPKEVCQHLDVSYPDYTLYEAGDRLPDVLTLLHAASLYNVSVDYLLGQT 87 Query: 78 PTVC 81 Sbjct: 88 ERPE 91 >gi|271962430|ref|YP_003336626.1| XRE family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270505605|gb|ACZ83883.1| putative transcriptional regulator, XRE family [Streptosporangium roseum DSM 43021] Length = 117 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 D+ +G ++R R G+SQ+ + E G++ + + E G + L + + Sbjct: 33 DLELGDQLREIRKRRGLSQKVVAERSGMSQPALSRIEGGGGIPDIATLLRLGAAMGV 89 >gi|291087116|ref|ZP_06345452.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075696|gb|EFE13060.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 266 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 12/76 (15%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPISFF 73 + +R++ R+ G++ E+L E ++ + YE + L +++ E + + Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEADEYKDISHYALIELAKFYEVTVDYL 64 Query: 74 FDVSPTVCSDISSEEN 89 S T + + Sbjct: 65 LGRSQTKNHPNADLAD 80 >gi|163855110|ref|YP_001629408.1| transcriptional regulator [Bordetella petrii DSM 12804] gi|163258838|emb|CAP41137.1| predicted transcriptional regulator [Bordetella petrii] Length = 229 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 28/74 (37%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G R+R R M+ + L GI + K E G + + ++ L ++ Sbjct: 34 KEMGARLRAERKARKMTLQDLSRASGIAVSTISKAELGQIALSYEKFASLARGLNIDMTR 93 Query: 73 FFDVSPTVCSDISS 86 F + + ++ Sbjct: 94 LFMLGDAPQASMAP 107 >gi|163737289|ref|ZP_02144707.1| hypothetical protein RGBS107_04063 [Phaeobacter gallaeciensis BS107] gi|161389893|gb|EDQ14244.1| hypothetical protein RGBS107_04063 [Phaeobacter gallaeciensis BS107] Length = 140 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 4/117 (3%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 ++ V I +G R+ + R +G++Q + E +G++ + YEKG + L +S+ Sbjct: 2 RQDAKSVFIAMGARLAIARNEVGLTQTAMAEAIGVSHRAYHSYEKGQRGLPVEALVAMSD 61 Query: 65 VLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 E ++ + TV + E ++ T LN I+I K R I+ Sbjct: 62 RFEVDAAWILLGTQTVRASHDFEALKQIE---TSLDQHLNEENIKIKSEK-RGAIVA 114 >gi|153810521|ref|ZP_01963189.1| hypothetical protein RUMOBE_00902 [Ruminococcus obeum ATCC 29174] gi|149833700|gb|EDM88781.1| hypothetical protein RUMOBE_00902 [Ruminococcus obeum ATCC 29174] Length = 117 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 1/87 (1%) Query: 5 KKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHIS 63 +K + D G I+ R G+++E++G + I + + E L + Sbjct: 2 RKKEDKYDFRAFGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLV 61 Query: 64 EVLESPISFFFDVSPTVCSDISSEENN 90 +L + FF S ++ + Sbjct: 62 SLLNVSVDEFFLSSDSLVKSSRRRQLE 88 >gi|42519604|ref|NP_965534.1| hypothetical protein LJ1729 [Lactobacillus johnsonii NCC 533] gi|41583893|gb|AAS09500.1| hypothetical protein LJ_1729 [Lactobacillus johnsonii NCC 533] gi|329667850|gb|AEB93798.1| hypothetical protein LJP_1478 [Lactobacillus johnsonii DPC 6026] Length = 268 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 18/138 (13%), Positives = 59/138 (42%), Gaps = 9/138 (6%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G+ ++ R G++Q++ + + ++ K E+ ++ + A+ L + + S Sbjct: 1 MNIGEALKQYRTSAGLTQKEFTQNI-LSPAHYSKIERNLHEISANDLLKLLNQNKIRYSD 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI------DDVKVRQKIIELVRSI 126 FF + I ++ + D + + + +I D + + EL+ Sbjct: 60 FFSSL--NQNSIEEQDKKISDQLLSAYYDRDVDKAKEIYTQISTSDNDLLKLRAELILDT 117 Query: 127 VSSEKKYRTIEEECMVEQ 144 + ++ + ++ ++++ Sbjct: 118 LQGGRRKLSNNKDKILQK 135 >gi|21229985|ref|NP_635902.1| PbsX family transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766861|ref|YP_241623.1| PbsX family transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|21111500|gb|AAM39826.1| transcriptional regulator pbsX family [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572193|gb|AAY47603.1| transcriptional regulator pbsX family [Xanthomonas campestris pv. campestris str. 8004] Length = 125 Score = 41.3 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 9/124 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFFFD 75 +R+R R + ++QE L LG+T V ++E L +++ + Sbjct: 6 ERVREARSLTKLTQEALAGELGVTRSAVAQWEMAEGTAPSVDNLIGLAKRSGMTFEYLAT 65 Query: 76 VSPT----VCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 +EE + + L F + + R +++L+ + + Sbjct: 66 GRGERVFGPPVSSIAEEPAQYRHLDEQQRV-LLSRFDALA-PRQRTGLLDLL--LAEGKP 121 Query: 132 KYRT 135 + R Sbjct: 122 RRRR 125 >gi|328947050|ref|YP_004364387.1| hypothetical protein Tresu_0124 [Treponema succinifaciens DSM 2489] gi|328447374|gb|AEB13090.1| helix-turn-helix domain protein [Treponema succinifaciens DSM 2489] Length = 106 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 38/96 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 + ++ R G++QEKL E + ++ + E A + I+ LE P+S F+ Sbjct: 9 QNMKYYRKQAGLTQEKLAEAIDMSTSYIGDMEARERFPSAETIDKIAAALEIPVSLLFNE 68 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + S + + ++ + ++ D Sbjct: 69 RGSPDSLKDTFLKIYGASLKDELSSRILKDINEVCD 104 >gi|319938782|ref|ZP_08013146.1| XRE family transcriptional regulator [Streptococcus anginosus 1_2_62CV] gi|319811832|gb|EFW08098.1| XRE family transcriptional regulator [Streptococcus anginosus 1_2_62CV] Length = 91 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R G++Q +L + G++ Q V E+G I+ + + F + Sbjct: 5 NRLKELRARDGLNQTELAKKAGVSRQTVSLIERGEYAPSVIIALKIAHIFGENVENVFYL 64 Query: 77 SPTVCSDISSE 87 + Sbjct: 65 KENSDEKMDEN 75 >gi|300856321|ref|YP_003781305.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300436436|gb|ADK16203.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 71 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 27/63 (42%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R L +SQ++L G++ Q + E G A +++ L+ F + Sbjct: 9 NRLKVARAELNISQQQLATMAGVSRQTISSIETGQYCPTAKLALILAKCLQKKFEDLFYL 68 Query: 77 SPT 79 Sbjct: 69 EEE 71 >gi|297570404|ref|YP_003691748.1| transcriptional regulator, XRE family [Desulfurivibrio alkaliphilus AHT2] gi|296926319|gb|ADH87129.1| transcriptional regulator, XRE family [Desulfurivibrio alkaliphilus AHT2] Length = 77 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 28/75 (37%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N I G R++L R G+SQE+L + + E+ + + I++ L Sbjct: 3 TKNQALIQFGGRVKLARKNKGLSQEELASKASLHRTYIGMIERAEKNITLINMMKIAKAL 62 Query: 67 ESPISFFFDVSPTVC 81 + + + Sbjct: 63 DVKLIELLEFVDNGK 77 >gi|326791877|ref|YP_004309698.1| hypothetical protein Clole_2801 [Clostridium lentocellum DSM 5427] gi|326542641|gb|ADZ84500.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 159 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 14/111 (12%) Query: 18 RIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI+ RR LG+SQ++L L + K E G N + S+++ +E L + S+ Sbjct: 6 RIKERREALGLSQDELALKLNYKSRSTIAKIESGANDIPQSKIKAFAEALNTTTSYLMGW 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD---VKVRQKIIELVR 124 T +L + +++D + +++ EL Sbjct: 66 DSE----------EEQLPTITEKEKELLTNYNKLNDLGKDEAVKRVSELTE 106 >gi|295110993|emb|CBL27743.1| Predicted transcriptional regulator with C-terminal CBS domains [Synergistetes bacterium SGP1] Length = 140 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 39/83 (46%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ RR LGM+QE+L LG+T + + E V + + L I+ L + Sbjct: 4 IGANIKARRRALGMNQEELARKLGVTQANISRIESSVKGLSSDMLLPIASALSCDVRELL 63 Query: 75 DVSPTVCSDISSEENNVMDFIST 97 + +++S+ + F++ Sbjct: 64 GLKCDDRTELSALGEDARTFVTR 86 >gi|312200628|ref|YP_004020689.1| helix-turn-helix domain protein [Frankia sp. EuI1c] gi|311231964|gb|ADP84819.1| helix-turn-helix domain protein [Frankia sp. EuI1c] Length = 202 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 30/55 (54%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ RR LG+SQ++L E +G+ +Q+++YE + S ++E L + Sbjct: 5 MKRRRAELGLSQQQLAERVGVDRRQIRRYEADEQQPLLSVGLALAEALGVSAAEL 59 >gi|266621964|ref|ZP_06114899.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288866352|gb|EFC98650.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 84 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 5/74 (6%) Query: 12 DINVGKRIRLRRMILGMSQEKLGEC-----LGITFQQVQKYEKGVNRVGASRLQHISEVL 66 D+ +G IR R G++QE+ IT K E G+ + A+ + + + Sbjct: 8 DMVIGYNIRRLRKRTGLTQEQTVAKMQLMECNITRGNYAKIEVGLANIRATEMMALKRIF 67 Query: 67 ESPISFFFDVSPTV 80 FF P Sbjct: 68 GVDYGEFFVPVPEE 81 >gi|227485462|ref|ZP_03915778.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] gi|227236592|gb|EEI86607.1| transcriptional regulator [Anaerococcus lactolyticus ATCC 51172] Length = 131 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 14/122 (11%), Positives = 43/122 (35%), Gaps = 5/122 (4%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISFFFD 75 +++ R ++Q +L E + ++ + + +YE G+++ + +++ L + + Sbjct: 5 SKLKSLREEKKLTQGELAEKVNVSLKTISRYELGISKPRYRKTYDLLADALNTSHDYLVT 64 Query: 76 VSPTVCSDISSEENNVMDFISTP--DGLQLNRYFIQIDDVKVRQKIIELVRS--IVSSEK 131 + DG+ +I + R + + + I + Sbjct: 65 DEEDFILTTRERYGIKAGKEAEDLVDGVIGLMAGGEIPEEDKRAILDAISEAYYIARQDS 124 Query: 132 KY 133 K Sbjct: 125 KK 126 >gi|227509640|ref|ZP_03939689.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191002|gb|EEI71069.1| transcriptional regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 198 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 26/81 (32%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + V +R R+ G S KL E G++ + + E + + I L P Sbjct: 12 DIGAIVSTNLRKIRLEKGFSLTKLSELSGVSKGMLSQIENNGTSPTINTIWKICAGLNVP 71 Query: 70 ISFFFDVSPTVCSDISSEENN 90 + + I N Sbjct: 72 YTALLEGRVETTKIIKKSAIN 92 >gi|261346291|ref|ZP_05973935.1| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] gi|282565603|gb|EFB71138.1| transcriptional regulator, Cro/CI family [Providencia rustigianii DSM 4541] Length = 99 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 34/63 (53%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ +G IR R+ G+S+++L + ++ QQ+ +YE+G++ + + + L P Sbjct: 3 LNEKIGNFIRNARVSKGLSEKELASLISVSQQQISRYERGISTLSIENILILLNALNIPF 62 Query: 71 SFF 73 F Sbjct: 63 DEF 65 >gi|168494769|ref|ZP_02718912.1| transcriptional activator [Streptococcus pneumoniae CDC3059-06] gi|183575326|gb|EDT95854.1| transcriptional activator [Streptococcus pneumoniae CDC3059-06] Length = 273 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 45/106 (42%), Gaps = 1/106 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ + +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVY 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + S + ++ + ++ +D + R+ Sbjct: 61 SLMPDFSALPSAYLELKYQILREPIYGKEEEYDKKEACLDTSRTRR 106 >gi|168178094|ref|ZP_02612758.1| conserved domain protein [Clostridium botulinum NCTC 2916] gi|226947985|ref|YP_002803076.1| hypothetical protein CLM_0846 [Clostridium botulinum A2 str. Kyoto] gi|182671230|gb|EDT83204.1| conserved domain protein [Clostridium botulinum NCTC 2916] gi|226841652|gb|ACO84318.1| conserved domain protein [Clostridium botulinum A2 str. Kyoto] Length = 69 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 23/63 (36%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 IR R G++Q K+ E L +T Q + EK I + PI F + Sbjct: 7 IREIRQKKGITQIKMAEDLQVTRQTINAIEKNKYNPSLELALKIIAYFDVPIDEIFILEE 66 Query: 79 TVC 81 Sbjct: 67 DDK 69 >gi|118480383|ref|YP_897534.1| transcription activator PlcR [Bacillus thuringiensis str. Al Hakam] gi|196045523|ref|ZP_03112754.1| putative transcriptional regulator PlcR [Bacillus cereus 03BB108] gi|225867332|ref|YP_002752710.1| putative transcriptional regulator PlcR [Bacillus cereus 03BB102] gi|229187576|ref|ZP_04314716.1| hypothetical protein bcere0004_51090 [Bacillus cereus BGSC 6E1] gi|118419608|gb|ABK88027.1| transcription activator PlcR [Bacillus thuringiensis str. Al Hakam] gi|196023730|gb|EDX62406.1| putative transcriptional regulator PlcR [Bacillus cereus 03BB108] gi|225786453|gb|ACO26670.1| putative transcriptional regulator PlcR [Bacillus cereus 03BB102] gi|228595943|gb|EEK53623.1| hypothetical protein bcere0004_51090 [Bacillus cereus BGSC 6E1] Length = 285 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DVSPTVCSDISSEENNVMDFI 95 +V + + + + + + Sbjct: 65 EVLIYSDIERNKQLKDQIIML 85 >gi|172057104|ref|YP_001813564.1| XRE family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989625|gb|ACB60547.1| transcriptional regulator, XRE family [Exiguobacterium sibiricum 255-15] Length = 395 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+RI+ R ++Q + + + T + E LQ I+ L I Sbjct: 1 MLGQRIKSLRKAKKLTQSDVADGIM-TKSMLSMIENEKATPSLPALQSIAHRLHVSIDAL 59 Query: 74 F 74 Sbjct: 60 L 60 >gi|329666835|gb|AEB92783.1| hypothetical protein LJP_0449 [Lactobacillus johnsonii DPC 6026] Length = 275 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ ++ R LG+SQ ++ +T K E+G++ + AS L I E+ + IS Sbjct: 1 MTIGEALKETRKNLGLSQTEM-AYPILTKSYYSKIERGIHEINASDLIKILEIHDVDISE 59 Query: 73 FF 74 F Sbjct: 60 FL 61 >gi|324989660|gb|EGC21604.1| hypothetical protein HMPREF9388_2113 [Streptococcus sanguinis SK353] Length = 136 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 10/82 (12%), Positives = 27/82 (32%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + ++ R ++QE L E L ++ + ++E L IS + + Sbjct: 1 MKISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + + + Sbjct: 61 LIKEDERLEKKVIEDSKAKKWH 82 >gi|325104601|ref|YP_004274255.1| protein of unknown function DUF955 [Pedobacter saltans DSM 12145] gi|324973449|gb|ADY52433.1| protein of unknown function DUF955 [Pedobacter saltans DSM 12145] Length = 354 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Query: 17 KRIRLRRMILGMSQEKLGECL--GITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +R + R++ G S + L + L ++ Q + +YEKG A ++ +S+ L +FF Sbjct: 9 ERFKSARLMNGFSLQDLADALGGTLSRQALHRYEKGEVIPDAEKINMLSKALNISPDYFF 68 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + SDI ++ + + + ++ Sbjct: 69 RTTKVEFSDIEYRISSKVSPKDKAIINETTKEYLS 103 >gi|296386710|ref|ZP_06876209.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 179 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 40/103 (38%), Gaps = 3/103 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++L R LG++ E L + G+T + K E+G+N + +++ L + F Sbjct: 4 RLKLLRKKLGVTLETLADKTGLTKSYLSKVERGLNTPSIAAALKLAKALNVQVEELFSEE 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 S + +S+ D + + + ++ Sbjct: 64 SDGVDGYSIVRRDQRKSLSSGDDGP---AYASLAQQIGARALL 103 >gi|296506515|ref|YP_003667749.1| transcriptional regulator [Bacillus thuringiensis BMB171] gi|296327102|gb|ADH10029.1| transcriptional regulator [Bacillus thuringiensis BMB171] Length = 66 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R+ L MSQE L +G+ + + E G I++VL++PI F Sbjct: 6 RMKEYRVKLSMSQEDLANEVGVRRETIGNLENGKYNPSFKLTYDIAKVLKAPIEVLFWFE 65 Query: 78 P 78 Sbjct: 66 E 66 >gi|326789828|ref|YP_004307649.1| hypothetical protein Clole_0718 [Clostridium lentocellum DSM 5427] gi|326540592|gb|ADZ82451.1| helix-turn-helix domain protein [Clostridium lentocellum DSM 5427] Length = 122 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 30/73 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ R L ++QE GE LG+ + K E G N + + I + Sbjct: 3 ERIKSVRKALNLTQENFGEKLGVRKTAISKLENGENNLTEQMQKLICNEFNVNEEWLRTG 62 Query: 77 SPTVCSDISSEEN 89 + + + + +E Sbjct: 63 NGEMFNQMDRDEE 75 >gi|256378649|ref|YP_003102309.1| XRE family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922952|gb|ACU38463.1| transcriptional regulator, XRE family [Actinosynnema mirum DSM 43827] Length = 271 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 28/59 (47%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VD VG +R R +SQ+ L E ++ + V + E G+ + ++E L+ P Sbjct: 13 VDEPVGVLLRAWRRRKSLSQQGLAEAAAVSARHVSRVETGLAHPTPEMILRLAEHLDVP 71 >gi|283796900|ref|ZP_06346053.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] gi|291075310|gb|EFE12674.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium sp. M62/1] Length = 139 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 5/124 (4%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV-GASRLQHISEVLESPISFFFDV 76 R++ +R+ ++Q L E + +T + +Q YE G + ++ ++E L + + Sbjct: 6 RLKEKRVEANLTQAALAEKVSVTARTIQNYELGTRKPTKYDIVKKLAEALNTTPEYLLGN 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIELVRS--IVSSEKK 132 + + ++ F ++ + + + L R+ I + K Sbjct: 66 GGMLVLAAQEQGGAKAAREIDELVSEVTGMFAGGKLSEDALDGAMQALTRAYWIAKEKNK 125 Query: 133 YRTI 136 T Sbjct: 126 KYTP 129 >gi|261350497|ref|ZP_05975914.1| toxin-antitoxin system, antitoxin component, Xre family [Methanobrevibacter smithii DSM 2374] gi|288861280|gb|EFC93578.1| toxin-antitoxin system, antitoxin component, Xre family [Methanobrevibacter smithii DSM 2374] Length = 108 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 36/96 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG + R G +QE++ LGIT + K E G + L + + + Sbjct: 5 VGTTLNKLRRENGYTQEQVSNYLGITQSNLSKIENGERNFNMTLLDKLCLLYNCSPEYLL 64 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + + + ++ ++ + + F+++ Sbjct: 65 GETDSHEKPSIAFRSDEKVDLNVVAKMNEIKGFLKL 100 >gi|221235725|ref|YP_002518162.1| Xre family transcriptional regulator [Caulobacter crescentus NA1000] gi|220964898|gb|ACL96254.1| transcriptional regulator, Xre family [Caulobacter crescentus NA1000] Length = 69 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 VG +R R G+ Q++L G+ + E G + L+ ++ L P + Sbjct: 7 VGANVRTLREARGLPQDELAHLAGVHATYLSGIETGKRNLTLKVLERLASALRVPETDL 65 >gi|210616048|ref|ZP_03290920.1| hypothetical protein CLONEX_03139 [Clostridium nexile DSM 1787] gi|210149956|gb|EEA80965.1| hypothetical protein CLONEX_03139 [Clostridium nexile DSM 1787] Length = 241 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 14/96 (14%), Positives = 33/96 (34%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +RI+ Q + + GI+ Y G A +++ I++ L+ + + + Sbjct: 18 IAERIKFAMKAKNKKQVDIVKDTGISKGAFSSYLSGQYNPKADKMELIADSLDVDLRWLY 77 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 + + S+ F + L I Sbjct: 78 GQNVPMEHTSQSDNTLQYVFYNNSCSEYLLDNLDDI 113 >gi|209549722|ref|YP_002281639.1| XRE family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535478|gb|ACI55413.1| transcriptional regulator, XRE family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 264 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 24/63 (38%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P +G +R R MSQ L I+ + + E G L H++E L P Sbjct: 3 PTARPLGDHLREWRQRRRMSQLDLALEADISQRHLSFIESGRATPSRDMLLHLAERLGVP 62 Query: 70 ISF 72 + Sbjct: 63 LRD 65 >gi|206969718|ref|ZP_03230672.1| DNA-binding protein [Bacillus cereus AH1134] gi|206735406|gb|EDZ52574.1| DNA-binding protein [Bacillus cereus AH1134] Length = 190 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 1 MVGNKKI-PNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRL 59 M N+ + V VG+ +R R +S E+L G++ + K E+G + + Sbjct: 1 MKENEDMQTKEVIQQVGQLLRQIRNEQKLSLEELAHKTGVSKLTLGKIERGETNPTLAVI 60 Query: 60 QHISEVLESPISFFF 74 I++ L P+S Sbjct: 61 WKITKGLSIPLSRLM 75 >gi|167758281|ref|ZP_02430408.1| hypothetical protein CLOSCI_00619 [Clostridium scindens ATCC 35704] gi|167664178|gb|EDS08308.1| hypothetical protein CLOSCI_00619 [Clostridium scindens ATCC 35704] Length = 67 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 21/65 (32%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+ R G+ QE+L + L ++ Q + E G I+ I F Sbjct: 3 NRLEEIRREHGLKQEELADILEVSRQTIGSLENGRYNPSIILAFKIARYFHRNIEDIFIY 62 Query: 77 SPTVC 81 Sbjct: 63 EEESK 67 >gi|167465059|ref|ZP_02330148.1| Transcriptional regulator, xre family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 84 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R G +Q++ + LGI+ ++ +EK + S+++ I EV +P + F Sbjct: 12 LRSLRTKYGYTQKEAAKLLGISEGTLRVWEKNSEGITYSKIKKIEEVYGTPQDYIFFGKE 71 Query: 79 TVCSDISS 86 + S+I Sbjct: 72 SAFSEILE 79 >gi|170740636|ref|YP_001769291.1| anaerobic benzoate catabolism transcriptional regulator [Methylobacterium sp. 4-46] gi|168194910|gb|ACA16857.1| transcriptional regulator, XRE family with shikimate kinase activity [Methylobacterium sp. 4-46] Length = 328 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 5/98 (5%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+R+R R + MS++ L G++ + + + E G V L+ ++ + P+ Sbjct: 44 ELGQRVRTARAVRAMSRKALSHSSGLSERYIAQLETGHGNVSIILLRRVAHAIGVPLEDL 103 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 D S + V D + T G Q+ + Sbjct: 104 I-----APVDASPDWPVVRDLLETASGAQIAEAKRILS 136 >gi|114327151|ref|YP_744308.1| MerR family transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114315325|gb|ABI61385.1| transcriptional regulator, MerR family [Granulibacter bethesdensis CGDNIH1] Length = 464 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 1/111 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+ +R R G SQ+ L LGI+ + E V AS L ++E L + Sbjct: 6 IGRTVRRLRQERGESQQSLAVRLGISASYLNLIEHDQRGVTASLLIKLAETLRVDLRALS 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRS 125 E + ++ + I+ L RS Sbjct: 66 GQQERHLQTGLREVFADPMLANESVSVEEVEQLAA-ASPNAARAILTLYRS 115 >gi|94995110|ref|YP_603208.1| Cro/CI family transcriptional regulator [Streptococcus pyogenes MGAS10750] gi|195867560|ref|ZP_03079563.1| transcriptional regulator, Cro/CI family [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|227499330|ref|ZP_03929442.1| Cro/CI family transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|313889288|ref|ZP_07822939.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|325849761|ref|ZP_08170908.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|94548618|gb|ABF38664.1| Transcriptional regulator, Cro/CI family [Streptococcus pyogenes MGAS10750] gi|195660804|gb|EDX54058.1| transcriptional regulator, Cro/CI family [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|227218614|gb|EEI83850.1| Cro/CI family transcriptional regulator [Anaerococcus tetradius ATCC 35098] gi|313122336|gb|EFR45424.1| DNA-binding helix-turn-helix protein [Streptococcus pseudoporcinus SPIN 20026] gi|325478308|gb|EGC81424.1| DNA-binding helix-turn-helix protein [Anaerococcus prevotii ACS-065-V-Col13] gi|325479990|gb|EGC83070.1| DNA-binding helix-turn-helix protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 133 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 47/125 (37%), Gaps = 3/125 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFFFDV 76 R++ R +SQ + +GI+ + + YE G + I+EV++ ++ + Sbjct: 6 RLKEFREKEKLSQADFAKMIGISTRTLVHYEDGERYPRDVEVYKKIAEVMDCDYNYLLEE 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIELVRSIVSSEKKYR 134 S + + + + L+ F +I D + R+ ++++ + Sbjct: 66 SDEFLNRVYNMGGKRELEKARALTEGLSSLFAGGEISDEDKDAAFEAITRAYWEAKRENK 125 Query: 135 TIEEE 139 + Sbjct: 126 KYGRK 130 >gi|53721418|ref|YP_110403.1| DNA-binding regulatory protein [Burkholderia pseudomallei K96243] gi|52211832|emb|CAH37831.1| putative DNA-binding regulatory protein [Burkholderia pseudomallei K96243] Length = 81 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G IR RR L MSQE L + + I + K E+G V + I+ V++ S Sbjct: 15 VLLGAAIRARRKELAMSQEVLADFVEIDRSHLGKIERGERNVTFMNIIRIARVMQLLPSE 74 Query: 73 FF 74 Sbjct: 75 LL 76 >gi|148544266|ref|YP_001271636.1| XRE family transcriptional regulator [Lactobacillus reuteri DSM 20016] gi|148531300|gb|ABQ83299.1| transcriptional regulator, XRE family [Lactobacillus reuteri DSM 20016] Length = 264 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 6/95 (6%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I + R M+Q++LG +G+T + + +YE G+ + L+ +SE L S S+ Sbjct: 87 GNNIYVERKKKHMTQKELGMKIGVTREYISEYELGIRPIPIETLKKLSEALGSEASYLLG 146 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI 110 V+ +++ DFI + D +L + ++ Sbjct: 147 VNGKYL------PHSMNDFILSLDDHELLKSTKEL 175 >gi|103485648|ref|YP_615209.1| XRE family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98975725|gb|ABF51876.1| transcriptional regulator, XRE family [Sphingopyxis alaskensis RB2256] Length = 93 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+R R G SQ +L LG++ Q + E ++ + + F Sbjct: 28 NRVREYREAAGWSQGELARRLGVSRQTINAVETDKYDPSLPLALRMARLFALEVCELF 85 >gi|325833141|ref|ZP_08165689.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|325485697|gb|EGC88164.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 71 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 24/62 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G IR R ++Q+ L +G T V E G + RL I++ L Sbjct: 9 VRLGAAIRAERRRQNITQQVLAGMIGTTQDYVSDLEAGEYNIKVGRLWQIADALGVHPGD 68 Query: 73 FF 74 Sbjct: 69 LM 70 >gi|319937023|ref|ZP_08011433.1| hypothetical protein HMPREF9488_02267 [Coprobacillus sp. 29_1] gi|319807959|gb|EFW04538.1| hypothetical protein HMPREF9488_02267 [Coprobacillus sp. 29_1] Length = 228 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 1/83 (1%) Query: 5 KKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-IS 63 KK VG+R++ RR L ++ +LG+ +G+ +Q+YE + + + ++ Sbjct: 2 KKEITFTAKQVGERVKERRTELNLTMPELGKRVGVNKSTIQRYEADGVDPKRTMIINGLA 61 Query: 64 EVLESPISFFFDVSPTVCSDISS 86 E L + + +S D + Sbjct: 62 EALLTTPEWLTGLSEDKEYDSRT 84 >gi|319897230|ref|YP_004135425.1| hypothetical protein HIBPF09641 [Haemophilus influenzae F3031] gi|317432734|emb|CBY81099.1| Conserved hypothetical protein [Haemophilus influenzae F3031] Length = 230 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 6/96 (6%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R+++ R G++Q++LG+ +G++ +QK E G ++ VL + Sbjct: 4 LANRLKIARKAAGLTQDQLGKLVGVSQNAIQKIEAGGET---KYTLALASVLGVDPIWLQ 60 Query: 75 DVS---PTVCSDISSEENNVMDFISTPDGLQLNRYF 107 P + +S+E + + Sbjct: 61 SGEGKTPEKTTALSTELVTTQRDNEHRHRIDYLDVY 96 >gi|306833652|ref|ZP_07466779.1| transcriptional regulator [Streptococcus bovis ATCC 700338] gi|304424422|gb|EFM27561.1| transcriptional regulator [Streptococcus bovis ATCC 700338] Length = 168 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 33/95 (34%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 11 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 70 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + + ++ I L++ + Sbjct: 71 VGEDKMLAPVEDYQLTLKIEVIKERGAAILSQLYR 105 >gi|291541453|emb|CBL14563.1| Helix-turn-helix [Ruminococcus bromii L2-63] Length = 118 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 13/108 (12%), Positives = 36/108 (33%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH 61 + + +P G I+ R G S++K+ + L I+ + + E + Sbjct: 1 MAKRPVPLYDFKAFGAAIKAARNEYGESRKKVSDELYISPRYLANIENKGQQPSLQVFYD 60 Query: 62 ISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 + + FF + + + + + G+++ + Sbjct: 61 LVTRYHISVDQFFFPNSNAEKSTGRRQLDALLDGMSDKGIRIVTATAR 108 >gi|312114539|ref|YP_004012135.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] gi|311219668|gb|ADP71036.1| helix-turn-helix domain protein [Rhodomicrobium vannielii ATCC 17100] Length = 206 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 4/73 (5%) Query: 3 GNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHI 62 + K P+ + + RIR R+ G+S +L + +GI+ + + E G + S+++ + Sbjct: 17 KDGKKPS---MAI-NRIRQLRLERGLSLTELAKKIGISESHLSRVEAGARGLHLSKMEAL 72 Query: 63 SEVLESPISFFFD 75 + L P++ Sbjct: 73 AGALGVPVTEILS 85 >gi|260886811|ref|ZP_05898074.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|330839382|ref|YP_004413962.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] gi|260863410|gb|EEX77910.1| toxin-antitoxin system, antitoxin component, Xre family [Selenomonas sputigena ATCC 35185] gi|329747146|gb|AEC00503.1| helix-turn-helix domain protein [Selenomonas sputigena ATCC 35185] Length = 82 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI R + G+SQE+ + +GI+ + K E+G + + + I+ LE+ ++ Sbjct: 17 LGQRIAYYRKLQGLSQEEFSKDVGISKSYLSKIERGDIQGISFVTVMEIARSLEAKVTKL 76 Query: 74 FDVSPT 79 D Sbjct: 77 LDFDEA 82 >gi|229825709|ref|ZP_04451778.1| hypothetical protein GCWU000182_01072 [Abiotrophia defectiva ATCC 49176] gi|229790272|gb|EEP26386.1| hypothetical protein GCWU000182_01072 [Abiotrophia defectiva ATCC 49176] Length = 66 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 21/61 (34%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R Q +L E +G + + E G I++V + F+ Sbjct: 6 RLKEYREKANYKQAELAELVGARRETIVHLENGKYNPSLKLAMDIAKVFGVTVEELFEFI 65 Query: 78 P 78 Sbjct: 66 D 66 >gi|298346337|ref|YP_003719024.1| hypothetical protein HMPREF0573_11211 [Mobiluncus curtisii ATCC 43063] gi|315654925|ref|ZP_07907830.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] gi|298236398|gb|ADI67530.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 43063] gi|315490886|gb|EFU80506.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] Length = 119 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 9/70 (12%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++ E+ ++ + YE + + L +++ + Sbjct: 5 IQERLKDLRVERGLTLEQFAVQTHLSKSALGSYEAEDFKDISHYALIKLAKFYGLTADYL 64 Query: 74 FDVSPTVCSD 83 +S T Sbjct: 65 LGLSETKNHP 74 >gi|225375461|ref|ZP_03752682.1| hypothetical protein ROSEINA2194_01086 [Roseburia inulinivorans DSM 16841] gi|257439443|ref|ZP_05615198.1| transcriptional regulator, MerR family [Faecalibacterium prausnitzii A2-165] gi|225212658|gb|EEG95012.1| hypothetical protein ROSEINA2194_01086 [Roseburia inulinivorans DSM 16841] gi|257198102|gb|EEU96386.1| transcriptional regulator, MerR family [Faecalibacterium prausnitzii A2-165] Length = 129 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 13/98 (13%), Positives = 36/98 (36%), Gaps = 1/98 (1%) Query: 2 VGNKKIPNPVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + ++ D + +G I+ R GM+QE+L + + + E + Sbjct: 11 MKIERDERRFDFHDIGLAIKRAREASGMTQEQLAYIVDRAPRTIMYNENDGQHPSFNTFY 70 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTP 98 + + + + +F S S+ + +++ + Sbjct: 71 QMVTMFDISVDQYFYPSQNSGSECRKRIDAMLNALDER 108 >gi|190889731|ref|YP_001976273.1| transcriptional regulator protein, MerR family [Rhizobium etli CIAT 652] gi|190695010|gb|ACE89095.1| probable transcriptional regulator protein, MerR family [Rhizobium etli CIAT 652] Length = 268 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 1/102 (0%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D +G+R+R R G + E++ GIT + E+ VG L +++ + +S Sbjct: 89 DSGLGRRLRSLRHAAGKTLEQVAGDNGITASTLSTLERTSQGVGFKTLHDLADYYGTTVS 148 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTP-DGLQLNRYFIQIDD 112 + +TP +QL ++ D Sbjct: 149 RLSGEESGEVPVLVRAGEWRSWPETTPGVTVQLLAEGPRMMD 190 >gi|189350245|ref|YP_001945873.1| putative bacteriophage repressor protein CI [Burkholderia multivorans ATCC 17616] gi|189334267|dbj|BAG43337.1| putative bacteriophage repressor protein CI [Burkholderia multivorans ATCC 17616] Length = 246 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R+R R +SQ +L G++ + E G N+ G+ L I+ L ++ Sbjct: 4 LAQRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQ-GSKHLLSIARALGVNPAWLE 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S + ++ + I G L Sbjct: 63 SESGPKDASAAAAPQPGIYKIPEDQGNVLV 92 >gi|187777811|ref|ZP_02994284.1| hypothetical protein CLOSPO_01403 [Clostridium sporogenes ATCC 15579] gi|187774739|gb|EDU38541.1| hypothetical protein CLOSPO_01403 [Clostridium sporogenes ATCC 15579] Length = 349 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 47/110 (42%), Gaps = 2/110 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + I+ +R G++QE++ LG++ V K+EKG + L ++ +L ++ Sbjct: 1 MKINEIIKEKRSSQGLTQEQVANYLGVSTPAVNKWEKGSCYPDITILPALARLLRVDLNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLN--RYFIQIDDVKVRQKII 120 + + N + I + ++ + +I + K+I Sbjct: 61 LLSFKEDLSEQEIGKFENELVQIISTKAFKIAFEKAMDKIHEYSTCNKLI 110 >gi|166033505|ref|ZP_02236334.1| hypothetical protein DORFOR_03231 [Dorea formicigenerans ATCC 27755] gi|166026690|gb|EDR45447.1| hypothetical protein DORFOR_03231 [Dorea formicigenerans ATCC 27755] Length = 320 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 12/93 (12%), Positives = 36/93 (38%), Gaps = 1/93 (1%) Query: 2 VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKY-EKGVNRVGASRLQ 60 G ++ P V ++ +R+ R G++ E+L + GI+ + Y ++ + L Sbjct: 46 TGKERAPMKVATSIQERLWELRKDKGLNLEELSKLTGISKSALGSYEKEDYKEINHGNLI 105 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMD 93 +++ + + + + ++ Sbjct: 106 TLADFYGVSVDYLLCRTENREQINTPLTELHLN 138 >gi|162147757|ref|YP_001602218.1| HTH-type transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209542381|ref|YP_002274610.1| XRE family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161786334|emb|CAP55916.1| putative HTH-type transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|209530058|gb|ACI49995.1| transcriptional regulator, XRE family [Gluconacetobacter diazotrophicus PAl 5] Length = 80 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 25/62 (40%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 RI + R G+++ L E + + Q + E+G + I VL + F + Sbjct: 3 NRIAMFRAERGLTRRALAEAVEVNPQTIGYLERGDYKPSLELALKICRVLGVEVDMVFSL 62 Query: 77 SP 78 P Sbjct: 63 EP 64 >gi|160941789|ref|ZP_02089116.1| hypothetical protein CLOBOL_06685 [Clostridium bolteae ATCC BAA-613] gi|266621247|ref|ZP_06114182.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|158435286|gb|EDP13053.1| hypothetical protein CLOBOL_06685 [Clostridium bolteae ATCC BAA-613] gi|288867090|gb|EFC99388.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 266 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 11/76 (14%), Positives = 31/76 (40%), Gaps = 1/76 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYE-KGVNRVGASRLQHISEVLESPISFF 73 + +R++ R+ G++ E+L E ++ + YE + + L +++ + Sbjct: 5 IQERLKDLRVERGLTLEQLAEQTHLSKSALGSYEAEDFKDISHYALIKLAKFYSVTADYL 64 Query: 74 FDVSPTVCSDISSEEN 89 +S T + + Sbjct: 65 LGLSETKNHPNADLAD 80 >gi|160893910|ref|ZP_02074689.1| hypothetical protein CLOL250_01465 [Clostridium sp. L2-50] gi|156864288|gb|EDO57719.1| hypothetical protein CLOL250_01465 [Clostridium sp. L2-50] Length = 91 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 31/76 (40%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+RI+ R+ ++ +LG CLGI QV + E GV R +L I + + Sbjct: 3 MEVGQRIQDIRIENEVTGAQLGACLGINGNQVSRIETGVARCSIYQLVLICQEFGCSADY 62 Query: 73 FFDVSPTVCSDISSEE 88 E Sbjct: 63 LLFGKKNTGMSKEQTE 78 >gi|148998894|ref|ZP_01826330.1| hypothetical protein CGSSp11BS70_00300 [Streptococcus pneumoniae SP11-BS70] gi|168576210|ref|ZP_02722104.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194397548|ref|YP_002037696.1| hypothetical protein SPG_0986 [Streptococcus pneumoniae G54] gi|225856709|ref|YP_002738220.1| hypothetical protein SPP_1071 [Streptococcus pneumoniae P1031] gi|307067756|ref|YP_003876722.1| putative transcriptional regulator [Streptococcus pneumoniae AP200] gi|147755321|gb|EDK62372.1| hypothetical protein CGSSp11BS70_00300 [Streptococcus pneumoniae SP11-BS70] gi|183577909|gb|EDT98437.1| conserved domain protein [Streptococcus pneumoniae MLV-016] gi|194357215|gb|ACF55663.1| conserved domain protein [Streptococcus pneumoniae G54] gi|225725852|gb|ACO21704.1| conserved domain protein [Streptococcus pneumoniae P1031] gi|306409293|gb|ADM84720.1| Predicted transcriptional regulator [Streptococcus pneumoniae AP200] gi|332200556|gb|EGJ14628.1| helix-turn-helix family protein [Streptococcus pneumoniae GA41317] Length = 73 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R ++Q+++ + L T K E+G + + A L +S + + + Sbjct: 3 RRLRDLREDHDLTQKQIAKILSFTDSAYAKIERGEHTLTADILVTLSNFYDVSTDYLLGL 62 Query: 77 SP 78 + Sbjct: 63 TD 64 >gi|146318591|ref|YP_001198303.1| transcriptional regulator [Streptococcus suis 05ZYH33] gi|146320791|ref|YP_001200502.1| transcriptional regulator [Streptococcus suis 98HAH33] gi|145689397|gb|ABP89903.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33] gi|145691597|gb|ABP92102.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33] Length = 168 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 13/95 (13%), Positives = 32/95 (33%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G I+ R ++Q + + +GI+ + +YE G + V + I + Sbjct: 11 MIGDNIKSLRRTHDLTQPEFAKMVGISRNSLSRYENGTSTVSTELIDRICQKFNVSYVDI 70 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 + ++ I L++ + Sbjct: 71 VGEDKMLTPVEDYHLTLKVEVIKERGAAILSQLYR 105 >gi|13475566|ref|NP_107130.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14026318|dbj|BAB52916.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 227 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 19/144 (13%), Positives = 45/144 (31%), Gaps = 12/144 (8%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ K +G +R R + ++ G+ + K E + R+ Sbjct: 1 MMDQKAS-------LGDFVREIRTRNHWTLSQVSAMTGLAISTLSKVENNQMSLTYDRIV 53 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120 +++ L+ I F T + + N ++ + ++ I+ Sbjct: 54 QLADGLKVDIVELFGTRATEATPSPLGRRTISRAGEGRSIKTKNYDYLYLCTDISKKSIV 113 Query: 121 EL-----VRSIVSSEKKYRTIEEE 139 + R++ R + EE Sbjct: 114 PMFGVAHARTMEEFGAFIRHVGEE 137 >gi|329116452|ref|ZP_08245169.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] gi|326906857|gb|EGE53771.1| DNA-binding helix-turn-helix protein [Streptococcus parauberis NCFD 2020] Length = 122 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++++ R+ SQ+ L + L I+ Q + K+E + L +S + E + Sbjct: 6 EQLKHFRLEKNFSQDYLADQLFISRQAISKWENNEAYPDMTNLIKLSTIFEVSLDQL 62 >gi|325288089|ref|YP_004263879.1| helix-turn-helix domain-containing protein [Cellulophaga lytica DSM 7489] gi|324323543|gb|ADY31008.1| helix-turn-helix domain protein [Cellulophaga lytica DSM 7489] Length = 257 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 34/73 (46%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I + IR R + G++Q+ L LGIT +V YE+G + L +S+ + PI Sbjct: 2 IFIATNIRHLRSLKGVTQQSLAIDLGITRARVSSYEEGRSAPTIETLIQLSDYFKLPIDV 61 Query: 73 FFDVSPTVCSDIS 85 + +D S Sbjct: 62 LVRNDLSKATDAS 74 >gi|322386497|ref|ZP_08060124.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] gi|321269416|gb|EFX52349.1| cro/CI family transcriptional regulator [Streptococcus cristatus ATCC 51100] Length = 75 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 ++ R GM+Q++L + +G+ + + E I++V + + F + Sbjct: 10 NLKSVRESRGMTQQELADHIGMRRETILHLENNRYNPSLEMALKIAQVFDLRVEELFQLK 69 Query: 78 PTVCSD 83 T Sbjct: 70 DTGGQS 75 >gi|322382659|ref|ZP_08056524.1| hypothetical protein PL1_2572 [Paenibacillus larvae subsp. larvae B-3650] gi|322384064|ref|ZP_08057785.1| hypothetical protein PL1_2193 [Paenibacillus larvae subsp. larvae B-3650] gi|321151237|gb|EFX44533.1| hypothetical protein PL1_2193 [Paenibacillus larvae subsp. larvae B-3650] gi|321153374|gb|EFX45796.1| hypothetical protein PL1_2572 [Paenibacillus larvae subsp. larvae B-3650] Length = 367 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 31/77 (40%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + R+ R G + L + I+ Q + KYEK L+ +S+ L Sbjct: 17 NRFSKFIPDRLIEAREARGFTLTDLANIVEISHQAISKYEKEKATPNHDTLEKLSDALHV 76 Query: 69 PISFFFDVSPTVCSDIS 85 P+++F+ P + Sbjct: 77 PVTYFYKSYPKKVDGVI 93 >gi|320533160|ref|ZP_08033882.1| toxin-antitoxin system, antitoxin component, Xre family [Actinomyces sp. oral taxon 171 str. F0337] gi|329944730|ref|ZP_08292809.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 170 str. F0386] gi|320134620|gb|EFW26846.1| toxin-antitoxin system, antitoxin component, Xre family [Actinomyces sp. oral taxon 171 str. F0337] gi|328529866|gb|EGF56756.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 67 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 22/63 (34%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +++ R +Q +L E LG++ Q V E G I+ V I F Sbjct: 5 LKVLRAQRSWTQARLAEELGVSRQTVNALEAGRYDPSLPLAFTIARVFGLTIEEIFFPDD 64 Query: 79 TVC 81 Sbjct: 65 DAS 67 >gi|319946413|ref|ZP_08020650.1| transcriptional regulator [Streptococcus australis ATCC 700641] gi|319747381|gb|EFV99637.1| transcriptional regulator [Streptococcus australis ATCC 700641] Length = 88 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 26/57 (45%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 ++++ R+ M+Q L + +G+T Q + E G S I + L+ + F Sbjct: 30 KLKMARVEHDMTQGDLADAIGVTRQTIGLIEAGKYNPTLSLCLAICKTLDKTLDQLF 86 >gi|293371781|ref|ZP_06618191.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] gi|292633233|gb|EFF51804.1| toxin-antitoxin system, antitoxin component, Xre family [Bacteroides ovatus SD CMC 3f] Length = 70 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 31/68 (45%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 ++ G R+R +R+ L +SQEKL I + E G V + + I++ L P+ Sbjct: 3 INELFGIRVREQRIALNLSQEKLANIADIDRTYLPDIENGKRNVSLAVAEKIAKALNVPL 62 Query: 71 SFFFDVSP 78 + + Sbjct: 63 TKLLETHE 70 >gi|222081872|ref|YP_002541237.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726551|gb|ACM29640.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 174 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 28/76 (36%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +R R+ +SQ +L + G+T + E L+ I + + ++ FF P Sbjct: 1 MRHLRVAHNLSQRELAKRAGVTNSTISLIESNSANPSVGALKRILDGIPIGLAEFFAFEP 60 Query: 79 TVCSDISSEENNVMDF 94 +++ Sbjct: 61 EKSRRAFYAAEELVEI 76 >gi|218283250|ref|ZP_03489311.1| hypothetical protein EUBIFOR_01900 [Eubacterium biforme DSM 3989] gi|218216005|gb|EEC89543.1| hypothetical protein EUBIFOR_01900 [Eubacterium biforme DSM 3989] Length = 194 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 27/58 (46%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 G I R M+Q +L + L +T + V ++E+G+ L +SE L ++ Sbjct: 7 GMFICKLRKENNMTQMELAQQLHVTDKAVSRWERGIGYPDIQLLPALSESLHVSVAEL 64 >gi|197285559|ref|YP_002151431.1| transcriptional regulator [Proteus mirabilis HI4320] gi|194683046|emb|CAR43543.1| putative transcriptional regulator [Proteus mirabilis HI4320] Length = 186 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 38/136 (27%), Gaps = 9/136 (6%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P++I + + I R G+S ++ GI + + E G L I L P Sbjct: 7 PIEI-ISQSIARERKKAGLSLAEIARRAGIAKSTLSQLEAGQGNPSIETLWAICVALNIP 65 Query: 70 ISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 S I + + L + R ++ I Sbjct: 66 FSQLISSPKPEVKVIRKGDGFKISAEKAYYHAFLL---SSCPNGAKR----DIYTVIAQP 118 Query: 130 EKKYRT-IEEECMVEQ 144 K + + + E Sbjct: 119 GKDRVSDPHSKNVTEH 134 >gi|229918743|ref|YP_002887389.1| XRE family transcriptional regulator [Exiguobacterium sp. AT1b] gi|229470172|gb|ACQ71944.1| transcriptional regulator, XRE family [Exiguobacterium sp. AT1b] Length = 150 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 24/60 (40%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G ++ R ++Q++L E L + + YE + ++ V + P+ + Sbjct: 5 GDLLKQLRKEKKLTQKELAEDLELDQSSISNYESNKKLPDVDTMMKMAIVFDVPVQELIN 64 >gi|169627539|ref|YP_001701188.1| putative transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169239506|emb|CAM60534.1| Putative transcriptional regulator [Mycobacterium abscessus] Length = 85 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 N + VG RIR R M+QE+L G+T + E G + RL I+ LE Sbjct: 17 NRIRQTVGARIRQIRTSQDMTQEQLALRSGVTRNVLIDVEHGRRGLLYERLFDIAAALEV 76 Query: 69 PISFFFDVS 77 + Sbjct: 77 TVGALLHED 85 >gi|163844095|ref|YP_001628499.1| XRE family transcriptional regulator [Brucella suis ATCC 23445] gi|163674818|gb|ABY38929.1| transcriptional regulator, XRE family [Brucella suis ATCC 23445] Length = 104 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRLQHISEVLESPIS 71 GKR+R R G++Q+++ + L ++ + E G + LQ I Sbjct: 5 GKRLRELREERGVTQKEMAQALRVSPAYLSALEHGRRGQPTWDLLQRIITYFNIIWD 61 >gi|161525013|ref|YP_001580025.1| putative phage repressor [Burkholderia multivorans ATCC 17616] gi|160342442|gb|ABX15528.1| putative phage repressor [Burkholderia multivorans ATCC 17616] Length = 270 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 1/90 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +R+R R +SQ +L G++ + E G N+ G+ L I+ L ++ Sbjct: 28 LAQRLRDTREEKSLSQAQLATRAGVSQTTIANVESGRNQ-GSKHLLSIARALGVNPAWLE 86 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLN 104 S + ++ + I G L Sbjct: 87 SESGPKDASAAAAPQPGIYKIPEDQGNVLV 116 >gi|66395867|ref|YP_240206.1| ORF084 [Staphylococcus phage EW] gi|62636289|gb|AAX91400.1| ORF084 [Staphylococcus phage EW] Length = 68 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 30/68 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G++I+ R+ LG + + G+ V +E G+ + R++ +++ + +S Sbjct: 1 MTLGQKIKRHRLNLGETMTEFGQRFNAKSGVVSNWENGIQKPNNKRMKILADEMGVTVSE 60 Query: 73 FFDVSPTV 80 Sbjct: 61 LLGSDNDE 68 >gi|94314004|ref|YP_587213.1| XRE family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357856|gb|ABF11944.1| transcriptional regulator, XRE family with cupin sensor domain [Cupriavidus metallidurans CH34] Length = 251 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 6/89 (6%) Query: 1 MVGNKKIPN-----PVDIN-VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 M + +D GKR+R R LG + L E G++ + + E+G + Sbjct: 1 MKETNASAHVDPSRTLDRETFGKRLRGARKALGWTLAHLAELSGVSITTISRAERGQLAL 60 Query: 55 GASRLQHISEVLESPISFFFDVSPTVCSD 83 G I + L+ + F + + Sbjct: 61 GYDNFAAIGKALQMDMGEMFAGAGETAAP 89 >gi|303235338|ref|ZP_07321956.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna BVS033A4] gi|302493652|gb|EFL53440.1| toxin-antitoxin system, antitoxin component, Xre family [Finegoldia magna BVS033A4] Length = 133 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 47/125 (37%), Gaps = 3/125 (2%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVG-ASRLQHISEVLESPISFFFDV 76 R++ R +SQ + +GI+ + + YE G + I+EV++ ++ + Sbjct: 6 RLKEFREKEKLSQADFAKIIGISTRTLVHYEDGERYPRDVEVYKKIAEVMDCDYNYLLEE 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFI--QIDDVKVRQKIIELVRSIVSSEKKYR 134 S + + + + L+ F +I D + R+ ++++ + Sbjct: 66 SDEFLNRVYNMGGKRELEKARALTEGLSSLFAGGEISDEDKDAAFEAITRAYWEAKRENK 125 Query: 135 TIEEE 139 + Sbjct: 126 KYGRK 130 >gi|257791171|ref|YP_003181777.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|325832901|ref|ZP_08165574.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] gi|257475068|gb|ACV55388.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|325485766|gb|EGC88230.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1] Length = 64 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G IR RR +SQ+KL +G + + + E G VG L I++ L+ + Sbjct: 1 MLLGSAIRERREAQSLSQQKLALMIGSSKSHIWRIESGRVSVGLDDLGRIADALDVQVRD 60 Query: 73 FFD 75 F Sbjct: 61 LFS 63 >gi|302552821|ref|ZP_07305163.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302470439|gb|EFL33532.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] Length = 447 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 36/101 (35%), Gaps = 2/101 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+R++ R+ G++Q +L E + T + E G R L+H++ L Sbjct: 10 IGRRVQRLRVERGLTQRQLAEPVY-TPAYISTLESGRVRPSDDALRHLAGRLGVAFDELA 68 Query: 75 DVSPTV-CSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +++ ++ + + + D Sbjct: 69 TGRSARLVTELRLRLTEAQRTLAVGETEAAAEQYAGLLDEA 109 >gi|326201359|ref|ZP_08191231.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325988927|gb|EGD49751.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 115 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 44/116 (37%), Gaps = 12/116 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 + G R+R R ++Q+KLGE + ++ + + YE + +++ + Sbjct: 1 MRFGDRLRELREERDITQKKLGELINVSTRVIGYYEANDRFPKDENVLKTLADFFNVSVD 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ--KIIELVRS 125 F ++ N D + N + + +++ I+L+++ Sbjct: 61 FLVG---------RTDIRNFSDDFVAESKIPYNLDLKGLPEEALKKVEDYIDLIKT 107 >gi|237711046|ref|ZP_04541527.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229454890|gb|EEO60611.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 77 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 G+ I R M+Q +L E +G + + E G S I+ L + Sbjct: 17 GQIIEEARKKANMTQAELAEKIGTNKSYISRVETGKTEPKVSTFYRIASALGLNVE 72 >gi|261344508|ref|ZP_05972152.1| DNA-binding protein [Providencia rustigianii DSM 4541] gi|282567418|gb|EFB72953.1| DNA-binding protein [Providencia rustigianii DSM 4541] Length = 91 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISE 64 PV +G +I R G++ +L + +G++ QQ +YE+G+NR+ RL + Sbjct: 6 PVSKMIGSKITYYRKSNGITLNQLAKMIGVSQQQQSRYERGLNRINLDRLNQYAN 60 >gi|217964592|ref|YP_002350270.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23] gi|290894058|ref|ZP_06557032.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|217333862|gb|ACK39656.1| helix-turn-helix domain protein [Listeria monocytogenes HCC23] gi|290556402|gb|EFD89942.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071] gi|307570843|emb|CAR84022.1| ans operon transcriptional repressor, putative [Listeria monocytogenes L99] Length = 131 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 6/85 (7%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGIT-FQQVQKYEKGVNRVGASRLQHISEV 65 +PN + R+ L R G S+ + LG+ +E G+ + I+ + Sbjct: 1 MPN-----LSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREPDLEMVTQIATL 55 Query: 66 LESPISFFFDVSPTVCSDISSEENN 90 + + + S ++ Sbjct: 56 YDVSVDYLLGQQSIPTYAPSELQDE 80 >gi|119505191|ref|ZP_01627266.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [marine gamma proteobacterium HTCC2080] gi|119458882|gb|EAW39982.1| Transcriptional Regulator of molybdate metabolism, XRE family protein [marine gamma proteobacterium HTCC2080] Length = 70 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R G +Q++L + G++ + + E G+ IS+ L+ + F Sbjct: 10 NNLEQLRKAAGFTQQQLSDSAGVSRKSINAIENGIYVPSTVLALKISQTLKCTVDDLF 67 >gi|56752065|ref|YP_172766.1| transcription regulator [Synechococcus elongatus PCC 6301] gi|81300847|ref|YP_401055.1| transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56687024|dbj|BAD80246.1| transcription regulator [Synechococcus elongatus PCC 6301] gi|81169728|gb|ABB58068.1| transcriptional regulator, XRE family with cupin sensor domain [Synechococcus elongatus PCC 7942] Length = 230 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 25/72 (34%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G IR R ++ ++ + GI+ + K E L+ + VL +S Sbjct: 23 RYLGNTIRELRQRHDLTIAEVSQKAGISRGMLSKIENAQTSASLETLERLVSVLGVSLSA 82 Query: 73 FFDVSPTVCSDI 84 F + Sbjct: 83 LFKGYEASSEQV 94 >gi|54024251|ref|YP_118493.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] gi|54015759|dbj|BAD57129.1| putative DNA-binding protein [Nocardia farcinica IFM 10152] Length = 287 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 27/72 (37%), Gaps = 1/72 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M K P D VG +R R +SQ L + + + E G +R + + Sbjct: 1 MAATSKRP-VTDSRVGALLREWRQRRRLSQLDLALLADTSARHLSYVETGRSRPSRAMVL 59 Query: 61 HISEVLESPISF 72 + L+ P+ Sbjct: 60 RLCAALDVPLRD 71 >gi|89097350|ref|ZP_01170240.1| transcriptional regulator [Bacillus sp. NRRL B-14911] gi|89088173|gb|EAR67284.1| transcriptional regulator [Bacillus sp. NRRL B-14911] Length = 107 Score = 41.3 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 1/95 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEVLESPISF 72 +G+R++ R MS +L E G+ + E+ L+ IS VL P+ Sbjct: 1 MIGERVKRLRQERKMSLSELAEQAGVAKSYLSSLERNLQTNPSIQFLEKISAVLHVPVDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 P S N V + + + R F Sbjct: 61 LILDQPNKEELDSEWMNIVKEAMDSGISKDQFREF 95 >gi|325686744|gb|EGD28770.1| transcription regulator [Streptococcus sanguinis SK72] Length = 136 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 10/82 (12%), Positives = 27/82 (32%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + ++ R ++QE L E L ++ + ++E L IS + + Sbjct: 1 MKISQVLKDIRQQNQLTQEALAERLKVSRSAIARWESEKGIPDIGNLIAISREFDISLDT 60 Query: 73 FFDVSPTVCSDISSEENNVMDF 94 + + + Sbjct: 61 LIKEDERLEKKVIEDSKAKKWH 82 >gi|325289689|ref|YP_004265870.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324965090|gb|ADY55869.1| helix-turn-helix domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 97 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 22/59 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G+ I+ R G ++E+L + + + + E + + + + FF Sbjct: 13 GQAIKKARENRGWTRERLAHLVDLAPRYIMSLENKGQHPSFQVFYELVTLFDISVDQFF 71 >gi|320638697|gb|EFX08362.1| putative transcriptional regulator from phage origin [Escherichia coli O157:H7 str. G5101] Length = 230 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 1/93 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPIS 71 +N+G R+R R M L E +G+ + + E G + + +I+ L I+ Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQALSNIARSLGVDIA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + + + + +++ Sbjct: 61 DLFTSDFKSNTVYKNSTGEDVAQVKDVFRIEML 93 >gi|264678072|ref|YP_003277979.1| XRE family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262208585|gb|ACY32683.1| transcriptional regulator, XRE family [Comamonas testosteroni CNB-2] Length = 139 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 12/100 (12%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + R++ R LG+SQ+ L E G++ + + YE G A+ L + + L + + Sbjct: 19 IATRLKEVREQLGLSQQALAERCGVSARSQRNYESGERLPDAAYLAEL-QQLGIDLDYVL 77 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 T + L + + + Sbjct: 78 TGHRTPSVPALDAKE-----------RDLIDSYRRCEPEA 106 >gi|326201358|ref|ZP_08191230.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] gi|325988926|gb|EGD49750.1| helix-turn-helix domain protein [Clostridium papyrosolvens DSM 2782] Length = 119 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 12/116 (10%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPIS 71 + G R+R R ++Q+KLGE + ++ + + YE + +++ + Sbjct: 1 MRFGDRLRELREERDITQKKLGELINVSARVIGYYEANDRFPRDENVLKTLADFFNVSVD 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ--KIIELVRS 125 + +E D I + N + D +++ I+L+++ Sbjct: 61 YLVG---------RTEIRFSSDDIVAESKISYNLDVKGLPDEALKKVEDYIDLIKT 107 >gi|290580743|ref|YP_003485135.1| hypothetical protein SmuNN2025_1217 [Streptococcus mutans NN2025] gi|254997642|dbj|BAH88243.1| hypothetical protein [Streptococcus mutans NN2025] Length = 79 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 33/74 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R GM+Q +L E + +T + V K+E+ ++ + + ++E+ E + Sbjct: 6 LGMMISSLRKEKGMTQLELAEKMRVTDKAVSKWERDLSFPDINSIPKLAEIFEVSVDDLM 65 Query: 75 DVSPTVCSDISSEE 88 V I + Sbjct: 66 QVKTNTKETIGKNK 79 >gi|229099941|ref|ZP_04230863.1| hypothetical protein bcere0020_51580 [Bacillus cereus Rock3-29] gi|228683486|gb|EEL37442.1| hypothetical protein bcere0020_51580 [Bacillus cereus Rock3-29] Length = 60 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 ++ R+ L MSQE L +G+ + + E G I++VLE+PI F Sbjct: 1 MKEYRVKLNMSQEDLANKVGVRRETIGNLENGKYNPSFKLTYDIAKVLEAPIETLFWFEE 60 >gi|257414251|ref|ZP_04745748.2| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] gi|257200672|gb|EEU98956.1| toxin-antitoxin system, antitoxin component, Xre family [Roseburia intestinalis L1-82] Length = 128 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 7/112 (6%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +KK +D ++G R++ R+ ++ ++L E G++ + +++ E N +L Sbjct: 13 MAKSKK----IDKDMGFRLKKARLDQKLTYDELSEKSGVSSRYIKEIENHGNVPSLEKLG 68 Query: 61 HISEVLESPIS-FFFDVSPTVCSDISSEENNVMDFISTPDG--LQLNRYFIQ 109 + L FF+ +PT D + + + L L +++ Sbjct: 69 QLIRALHISADPFFYPAAPTDNLDYQRLLVYLSECTNDQITTILALVEAYLR 120 >gi|225572879|ref|ZP_03781634.1| hypothetical protein RUMHYD_01070 [Blautia hydrogenotrophica DSM 10507] gi|317500124|ref|ZP_07958358.1| hypothetical protein HMPREF1026_00300 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087647|ref|ZP_08336575.1| hypothetical protein HMPREF1025_00158 [Lachnospiraceae bacterium 3_1_46FAA] gi|225039744|gb|EEG49990.1| hypothetical protein RUMHYD_01070 [Blautia hydrogenotrophica DSM 10507] gi|316898479|gb|EFV20516.1| hypothetical protein HMPREF1026_00300 [Lachnospiraceae bacterium 8_1_57FAA] gi|330399826|gb|EGG79486.1| hypothetical protein HMPREF1025_00158 [Lachnospiraceae bacterium 3_1_46FAA] Length = 211 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 31/64 (48%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL + Sbjct: 10 FLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNFPTFDTLEKIMDVLGVMPNEL 69 Query: 74 FDVS 77 Sbjct: 70 LSGE 73 >gi|149007465|ref|ZP_01831108.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP18-BS74] gi|168484288|ref|ZP_02709240.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00] gi|168492034|ref|ZP_02716177.1| transcriptional activator [Streptococcus pneumoniae CDC0288-04] gi|147761037|gb|EDK68006.1| transcriptional regulator PlcR, putative [Streptococcus pneumoniae SP18-BS74] gi|172042463|gb|EDT50509.1| transcriptional activator [Streptococcus pneumoniae CDC1873-00] gi|183573657|gb|EDT94185.1| transcriptional activator [Streptococcus pneumoniae CDC0288-04] gi|332071967|gb|EGI82455.1| transcriptional activator [Streptococcus pneumoniae GA17545] gi|332199415|gb|EGJ13492.1| transcriptional activator [Streptococcus pneumoniae GA47368] Length = 303 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 49/120 (40%), Gaps = 6/120 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G++I+ R+ G+S+ + +T +Q+ + E G ++ +L +I+ L P+ Sbjct: 1 MLIGQKIKEIRIEKGISRPDFCGDEQELTVRQLSRIESGASQPSLPKLDYIARRLGVPVY 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + S + ++ + ++ +++++ + + EK Sbjct: 61 SLMPDFSALPSAYLELKYQILREPIYDKEEEYDKKEACLEEIEDL-----FYEQLPNEEK 115 >gi|87198393|ref|YP_495650.1| XRE family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87134074|gb|ABD24816.1| transcriptional regulator, XRE family [Novosphingobium aromaticivorans DSM 12444] Length = 76 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 26/69 (37%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + G ++ R G+SQ ++ +G+ V E+G+ + I++ LE Sbjct: 2 DIRKLFGTNVKRYREAAGLSQAEIAARMGVDRAYVSAIERGLQNATLLSIWEIAQALEVR 61 Query: 70 ISFFFDVSP 78 + Sbjct: 62 PVALLEEPD 70 >gi|52785673|ref|YP_091502.1| hypothetical protein BLi01915 [Bacillus licheniformis ATCC 14580] gi|319645923|ref|ZP_08000153.1| hypothetical protein HMPREF1012_01187 [Bacillus sp. BT1B_CT2] gi|52348175|gb|AAU40809.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580] gi|317391673|gb|EFV72470.1| hypothetical protein HMPREF1012_01187 [Bacillus sp. BT1B_CT2] Length = 303 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 6/81 (7%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ------HISEVLE 67 +G R++ R GMS + L I + + E+G + + +E + Sbjct: 6 ELGNRLKEAREEKGMSLDDLQAATKIQKRYLTALEEGNYDIIPGKFYVRAFIKQYAEAVG 65 Query: 68 SPISFFFDVSPTVCSDISSEE 88 F+ + ++E Sbjct: 66 LDSEHLFEEFKKDIPNSYNDE 86 >gi|37523929|ref|NP_927306.1| repressor protein CI [Gloeobacter violaceus PCC 7421] gi|35214935|dbj|BAC92301.1| glr4360 [Gloeobacter violaceus PCC 7421] Length = 156 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Query: 8 PNPVDINVGKRIRLRRMILGMSQEKLGECLG-----ITFQQVQKYEKGVNRVGASRLQHI 62 P P ++ +G ++R R LG++Q++L L + + ++ + E G RV L Sbjct: 79 PRPTNL-IGPQVRYLRERLGLTQDELAGRLCRYGLELDYVKIGQIENGKRRVVDWELVGF 137 Query: 63 SEVLESPISFFFDVSPTV 80 + L +++ Sbjct: 138 ARALGVSVNWLLCGEDGR 155 >gi|158317575|ref|YP_001510083.1| XRE family transcriptional regulator [Frankia sp. EAN1pec] gi|158112980|gb|ABW15177.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec] Length = 165 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 5/100 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQ--VQKYEKGVNRVGASRLQHISEVLESPI 70 VG R+R R+ G+S + + + ++ V YE+G + +L ++ P+ Sbjct: 7 KAVGGRLRAIRIQQGLSLQGVEQKSRGRWKTAAVGSYERGDRMISVHQLSELAGFYGVPV 66 Query: 71 SFFF---DVSPTVCSDISSEENNVMDFISTPDGLQLNRYF 107 S D P + N + PD L R + Sbjct: 67 SALLPNEDQLPPRERRPRTVLNLEKLAEAPPDSSALVRRW 106 >gi|331082015|ref|ZP_08331143.1| hypothetical protein HMPREF0992_00067 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405610|gb|EGG85140.1| hypothetical protein HMPREF0992_00067 [Lachnospiraceae bacterium 6_1_63FAA] Length = 354 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 42/88 (47%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + + IR RR+ ++QE++ LG+T V K+EKG + + L ++ +LE+ ++ Sbjct: 1 MKINETIRQRRIERNLTQEQVANYLGVTAPAVNKWEKGTSYPDITTLPALARILETDLNT 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG 100 + + N + + +G Sbjct: 61 LLSFKEELTEQEIAIFLNTLSELLEKEG 88 >gi|319793353|ref|YP_004154993.1| XRE family transcriptional regulator [Variovorax paradoxus EPS] gi|315595816|gb|ADU36882.1| helix-turn-helix domain protein [Variovorax paradoxus EPS] Length = 89 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 22/59 (37%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G +R R G SQE+L E + V + E+G Q ++ L I Sbjct: 9 GVTVRQLREANGWSQEQLAERSDLNRSYVGEVERGRVIPSIVTAQKLATALGINIVNLL 67 >gi|330399475|ref|YP_004030573.1| Cro/CI family transcriptional regulator [Burkholderia rhizoxinica HKI 454] gi|312170212|emb|CBW77251.1| Transcriptional regulator, Cro/CI family [Burkholderia rhizoxinica HKI 454] Length = 130 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 38/83 (45%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M + + + +G+ I +R + G++QE+L E G+ + + E+G G RL Sbjct: 1 MAQENESRSKLARTIGQAIARQRRLRGLTQEQLSEAAGLAQASLSQIERGRVLPGLDRLA 60 Query: 61 HISEVLESPISFFFDVSPTVCSD 83 ++++L+ + T D Sbjct: 61 QLAQLLDCRLVDLVAEGGTGALD 83 >gi|295091006|emb|CBK77113.1| Helix-turn-helix. [Clostridium cf. saccharolyticum K10] Length = 141 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 26/73 (35%) Query: 24 MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSD 83 G++ K+G+ GI ++ G +R A ++Q I++ + + Sbjct: 10 EKYGVTAYKVGKETGIASSTFSDWKSGRSRPKADKMQKIADYFGVSVDYLMTGEEPAKKP 69 Query: 84 ISSEENNVMDFIS 96 S I+ Sbjct: 70 NSDLTARDERDIA 82 >gi|295090297|emb|CBK76404.1| Helix-turn-helix. [Clostridium cf. saccharolyticum K10] Length = 105 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 24/63 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G RI R+ +S+ ++ LG +Q G + I E LE Sbjct: 4 KFIGDRITELRIKKNVSEYQMSLDLGKNKSYIQSISSGRSLPTMENFLEICEYLEVTPCQ 63 Query: 73 FFD 75 FFD Sbjct: 64 FFD 66 >gi|291513608|emb|CBK62818.1| Predicted transcriptional regulator [Alistipes shahii WAL 8301] Length = 223 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 32/81 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++L R LGM+QE+L + LGI + E G + A + + L + Sbjct: 3 ERVKLIRKQLGMTQEQLAQRLGIGKAALSMIETGKAGLSARNRNILVQELNVNPDWLETG 62 Query: 77 SPTVCSDISSEENNVMDFIST 97 + + + ++ Sbjct: 63 KGNMFNAEPDLTAYMHRTDNS 83 >gi|288870495|ref|ZP_06114296.2| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] gi|288867009|gb|EFC99307.1| transcriptional regulator, Cro/CI family [Clostridium hathewayi DSM 13479] Length = 136 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 44/114 (38%), Gaps = 1/114 (0%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M+ ++ + + RI R+ G+S+ ++ LG +Q G + + Sbjct: 24 MLKEQRGERMDEEFIRNRITELRLKKGVSEYQMSMELGQNRSYIQAISSGRSMPSMKQFL 83 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVK 114 +I E E FFD + + + + M +S D + L + +++ Sbjct: 84 NICEYFEITPLQFFD-AQENNPQLIKKALDGMRKMSDDDLIMLIGFISRLNTEN 136 >gi|262194363|ref|YP_003265572.1| XRE family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262077710|gb|ACY13679.1| transcriptional regulator, XRE family [Haliangium ochraceum DSM 14365] Length = 79 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 27/68 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G +R R G++QE+ E L I+ + E+GV S L+ ++ + Sbjct: 9 IGNAVRDGRKAFGLTQEQAAERLDISADYYGRVERGVAIPSVSMLRRLAVAFGLDGNVLL 68 Query: 75 DVSPTVCS 82 + Sbjct: 69 GLGDADLD 76 >gi|255103259|ref|ZP_05332236.1| hypothetical protein CdifQCD-6_20775 [Clostridium difficile QCD-63q42] Length = 110 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 12/115 (10%), Positives = 40/115 (34%), Gaps = 14/115 (12%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 R++ R L ++Q + + +G++ + E ++ I ++ Sbjct: 4 RVKQIREKLKLNQAEFAKKIGLSQSTLAMIEVNKRTFSDKHIKLICSEFGVSENWLRTGE 63 Query: 78 PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + F S+P + F + ++ ++ + + ++ ++ K Sbjct: 64 GDM-------------FASSPYEKEFLNIFDSLTSD-TKEYLLLMAKELLKTQNK 104 >gi|195978893|ref|YP_002124137.1| hypothetical protein Sez_1797 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975598|gb|ACG63124.1| hypothetical protein Sez_1797 [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 189 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 6/105 (5%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 I+ R+ G +Q++L + +G+T Q + EKG RLQ I+ L I F Sbjct: 17 IKNARLKAGKTQKELAKLIGVTKQTIINDEKGTTEPSWDRLQEIATALNVDIDTLF---- 72 Query: 79 TVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELV 123 ++ E+ + Y ++ + QKI++ Sbjct: 73 --PYNMLGEKRDFKWMEHLERLENNWLYSRMAEEEVLLQKILDFA 115 >gi|183598576|ref|ZP_02960069.1| hypothetical protein PROSTU_01973 [Providencia stuartii ATCC 25827] gi|188020752|gb|EDU58792.1| hypothetical protein PROSTU_01973 [Providencia stuartii ATCC 25827] Length = 110 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 VG +R R +S +L + ++ QQ+ +YE GV + L I + + Sbjct: 23 KAVGIELRKLRKSYSLSGRELAGIMNVSQQQISRYECGVCAIPTDVLIIILGFFKITLFE 82 Query: 73 FFDV 76 FF Sbjct: 83 FFKG 86 >gi|171916012|ref|ZP_02931482.1| transcriptional regulator, XRE family protein [Verrucomicrobium spinosum DSM 4136] Length = 70 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+++ R ++Q++LG+ LG++ Q V E + IS V + P+ F Sbjct: 3 NRLKVLRAEHNLTQDELGKILGVSRQAVNALETEKHSPSLDLAYRISTVFKQPVEQIF 60 >gi|196036534|ref|ZP_03103929.1| putative transcriptional regulator PlcR [Bacillus cereus W] gi|228949071|ref|ZP_04111343.1| hypothetical protein bthur0007_51920 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|195990867|gb|EDX54840.1| putative transcriptional regulator PlcR [Bacillus cereus W] gi|228810644|gb|EEM56993.1| hypothetical protein bthur0007_51920 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 285 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R + G++Q++L E + +V + E G LQ I+ L+ PI F+ Sbjct: 6 LGNEIKKIRTMRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAAKLQVPIIHFY 64 Query: 75 DVSPTVCSDISSEENNVMDFI 95 +V + + + + + + Sbjct: 65 EVLIYSDIERNKQLKDQIIML 85 >gi|167767648|ref|ZP_02439701.1| hypothetical protein CLOSS21_02181 [Clostridium sp. SS2/1] gi|319938591|ref|ZP_08012978.1| hypothetical protein HMPREF9488_03814 [Coprobacillus sp. 29_1] gi|167710665|gb|EDS21244.1| hypothetical protein CLOSS21_02181 [Clostridium sp. SS2/1] gi|291560782|emb|CBL39582.1| Predicted transcription factor, homolog of eukaryotic MBF1 [butyrate-producing bacterium SSC/2] gi|319806227|gb|EFW02919.1| hypothetical protein HMPREF9488_03814 [Coprobacillus sp. 29_1] Length = 223 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 9/134 (6%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G+ I+ R GM Q++L + +GI Q + K E+GVN L+ I +VL + Sbjct: 10 FLGENIQTIRKHRGMKQQELADKIGINMQSLSKIERGVNYPTFDTLEKIMDVLGVTPNEL 69 Query: 74 FDVS----PTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE--LVRSIV 127 I DF + D L N +F D K + +E L++ I Sbjct: 70 LSGEWKYIDHTEPYIMDIIKREQDFNVSLDYLSENEFFN---DEKECRFYMETKLIQYIH 126 Query: 128 SSEKKYRTIEEECM 141 + T EE M Sbjct: 127 NYITNEVTELEELM 140 >gi|145298591|ref|YP_001141432.1| phage C protein [Aeromonas salmonicida subsp. salmonicida A449] gi|142851363|gb|ABO89684.1| phage C protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 87 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 2/87 (2%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M N ++ + KR+R R L +S+ K + LGI ++ YE G +G Sbjct: 1 MTAQPTQINLLNHHAAKRLRQLREQLALSRPKFADLLGIPPTTIKNYELGYREIGGGLFL 60 Query: 61 HISEVLES--PISFFFDVSPTVCSDIS 85 I+ + I + + Sbjct: 61 LIAHHPDLKQHIDWLLTGQAPSQIAEA 87 >gi|121583260|ref|YP_973696.1| XRE family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120596518|gb|ABM39954.1| putative transcriptional regulator, XRE family [Polaromonas naphthalenivorans CJ2] Length = 157 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 12/113 (10%), Positives = 35/113 (30%), Gaps = 13/113 (11%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G R++ G++Q +L G++ + E G++ + + Sbjct: 38 GLRLKQAYKHAGLTQVQLASAAGLSQAAIS--EACRVGTGSAYTVQFARACGVDAFWLAT 95 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVS 128 + +P L + R + + + R ++ + ++ Sbjct: 96 GDGEMEPATL-----------SPRALYIARELDRKEPPEQRDRLYAIFMQLLD 137 >gi|326803357|ref|YP_004321175.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651652|gb|AEA01835.1| DNA-binding helix-turn-helix protein [Aerococcus urinae ACS-120-V-Col10a] Length = 73 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R++ R G+SQ+ L + +G++ + E G A + L+ F Sbjct: 9 NRLKTIRKEKGLSQQALADMIGVSRNSISSIETGQFNPTAKLALILCIALDCQFENMF 66 >gi|307610924|emb|CBX00541.1| phage repressor [Legionella pneumophila 130b] Length = 229 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 41/106 (38%), Gaps = 3/106 (2%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECL-GITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 + +G+RI R G++++ L E + ++ YE+G G + ++ +++ LE Sbjct: 5 IKEKIGQRIMNERKAKGLTRKALAELTGELKTSRINNYERGDRTPGPTEIKLLADALEVS 64 Query: 70 ISFFFDVSPTVCSDISSEENNVMDF--ISTPDGLQLNRYFIQIDDV 113 S+ ++ ++ + Y +I D Sbjct: 65 ASYLMCLTDNREGKMTKSLGMGALIPVLDYKQAADPVTYIQKIKDD 110 >gi|228477905|ref|ZP_04062519.1| putative DNA-binding protein [Streptococcus salivarius SK126] gi|228250395|gb|EEK09635.1| putative DNA-binding protein [Streptococcus salivarius SK126] Length = 307 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G R+R R+ G+++EK E + + +Q+ + E G ++ L+H++ L +S Sbjct: 7 GHRLRELRLAQGLTKEKFCEGDEVLSVRQLTRIETGKSQPKLETLEHLARRLNISLSELL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + S + E N+ + L +++ D K+ + I + + E++ Sbjct: 67 -GERAIGSKLPVEYLNLKYKLMHATSLDKPNNLMKL-DEKLGKIIDIYYDDLPADEQRVV 124 Query: 135 TIE 137 I Sbjct: 125 DIL 127 >gi|218557450|ref|YP_002390363.1| repressor protein CI [Escherichia coli S88] gi|218364219|emb|CAR01884.1| putative repressor protein CI [Escherichia coli S88] Length = 230 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 1/93 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPIS 71 +N+G R+R R M L E +G+ + + E G + + +I+ L I+ Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQALSNIARSLGVDIA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + + + + + +++ Sbjct: 61 DLFTSDLKSNTVCKNSISEDVTQVKDVFRIEML 93 >gi|297195701|ref|ZP_06913099.1| transcriptional regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|197718957|gb|EDY62865.1| transcriptional regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 201 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 23/61 (37%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + + ++ R G + + L G++ + + E+ +++ L I+ Sbjct: 22 LARNLKHWRGERGFTLDALAARSGVSRGMIIQIEQARTNPSVGTTVKLADALGVSITTLL 81 Query: 75 D 75 D Sbjct: 82 D 82 >gi|126700757|ref|YP_001089654.1| putative transcriptional regulator [Clostridium difficile 630] gi|115252194|emb|CAJ70032.1| Transcriptional regulator, Phage-type [Clostridium difficile] Length = 66 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 27/63 (42%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 +I+ R L M+Q +L + +G+ + + E G I++V ++ + F+ Sbjct: 4 KIKEYREKLLMTQNELAKLVGVRRETIVHLENGKYNPSLKLAMDIAKVFDTTVENLFEFI 63 Query: 78 PTV 80 Sbjct: 64 EEE 66 >gi|16800303|ref|NP_470571.1| hypothetical protein lin1234 [Listeria innocua Clip11262] gi|16413708|emb|CAC96465.1| lin1234 [Listeria innocua Clip11262] Length = 142 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 20/56 (35%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RI+ R +Q + + LG+ YE+ A I+ + + + Sbjct: 5 RIKELRKESKKTQADMAKILGVAKTTYASYEQSKRMPDAEIQNKIANYFDVSLDYL 60 >gi|84687357|ref|ZP_01015236.1| putative transcriptional regulator [Maritimibacter alkaliphilus HTCC2654] gi|114762538|ref|ZP_01441982.1| putative transcriptional regulator [Pelagibaca bermudensis HTCC2601] gi|84664654|gb|EAQ11139.1| putative transcriptional regulator [Rhodobacterales bacterium HTCC2654] gi|114544793|gb|EAU47798.1| putative transcriptional regulator [Roseovarius sp. HTCC2601] Length = 124 Score = 41.3 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Query: 2 VGNKKIPNPVDIN----VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGAS 57 + K N D +G+R+R R LG+ Q+++ + L I + + E G RV A Sbjct: 1 MSVAKRTNDDDQEARQEMGERLREARRYLGLKQDEVAQYLKIQRTALSEIEAGNRRVEAL 60 Query: 58 RLQHISEVLESPISFFFDVSPTVCS 82 L ++++ P+++F S Sbjct: 61 ELNRLAKLYRQPVAYFIGEDDAAGS 85 >gi|313669611|ref|YP_004050035.1| xre family transcriptional regulator [Bacillus cereus VPC1401] gi|313191874|emb|CBW44171.1| xre family transcriptional regulator [Bacillus cereus VPC1401] Length = 296 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 2/108 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I+ R+ +SQ +L + + Q+ K EKGV + L +SE L + F Sbjct: 6 LGITIKELRIKKKISQSELCHGI-CSQSQISKIEKGVIYPSSVLLYQLSERLGVDPNSIF 64 Query: 75 DVSPTVCSDISSEENN-VMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121 ++ N + D I +L + + Q I + Sbjct: 65 AITQNNKLKYVENVKNVIQDCIRQHQYKELYEIVKKEKNENNFQSIED 112 >gi|325066311|ref|ZP_08124984.1| XRE family transcriptional regulator [Actinomyces oris K20] Length = 67 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 22/63 (34%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSP 78 +++ R +Q +L E LG++ Q V E G I+ V I F Sbjct: 5 LKVLRAQRSWTQARLAEELGVSRQTVNALEAGRYDPSLPLAFTIARVFGLTIEEIFFPDD 64 Query: 79 TVC 81 Sbjct: 65 EAS 67 >gi|302348011|ref|YP_003815649.1| Putative HTH-type transcriptional regulatory [Acidilobus saccharovorans 345-15] gi|302328423|gb|ADL18618.1| Putative HTH-type transcriptional regulatory [Acidilobus saccharovorans 345-15] Length = 341 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 14/109 (12%), Positives = 40/109 (36%), Gaps = 2/109 (1%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G+++R +R + G S + ++ + + YE+G + + + L I D Sbjct: 133 GEKLRQKRELKGYSLGTMARLAKVSRKAIYDYERGSIKPTLDVAERLINELGEDIVASID 192 Query: 76 VSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV--KVRQKIIEL 122 + +S + + +++ R + R+ +++ Sbjct: 193 IFDPSEEILSGSKPSHGTDFDDQMEVEMVRRLRGLMLDVCHARRAPLDI 241 >gi|298292822|ref|YP_003694761.1| XRE family transcriptional regulator [Starkeya novella DSM 506] gi|296929333|gb|ADH90142.1| transcriptional regulator, XRE family [Starkeya novella DSM 506] Length = 72 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 24/55 (43%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 VG+ R ++QE++ E G++ Q + E+G L ++ L+ Sbjct: 7 VGRNFARLRQAKDLTQEQVAERSGLSQQYLSGLERGRRNPTIITLYELARALDVS 61 >gi|295105803|emb|CBL03346.1| Predicted transcriptional regulators [Gordonibacter pamelaeae 7-10-1-b] Length = 67 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R+ R G+ QE L LG++ Q + EKG I+ + I F Sbjct: 3 NRLEEIRKARGIKQEDLATELGVSRQTISSLEKGRYNPSILLAFKIARHFDLSIEDVF 60 >gi|291541402|emb|CBL14512.1| Helix-turn-helix [Ruminococcus bromii L2-63] Length = 119 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 1/85 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS-FF 73 +G+ I+ R GM++E+L +G + +Q E + + + + + Sbjct: 15 IGQAIKKAREARGMTREQLSGIIGYAPRHIQSIENEGQYPSIELFIQLITMFDVSVDEYI 74 Query: 74 FDVSPTVCSDISSEENNVMDFISTP 98 F S + + ++ + Sbjct: 75 FPNKEVEKSSVRRRLDAQLNRLDDK 99 >gi|262067877|ref|ZP_06027489.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium periodonticum ATCC 33693] gi|291378598|gb|EFE86116.1| toxin-antitoxin system, antitoxin component, Xre family [Fusobacterium periodonticum ATCC 33693] Length = 231 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 1/120 (0%) Query: 4 NKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHI 62 KK +I + +++ R+ +S +K+ + L IT + KYE + + + + Sbjct: 71 KKKKATLKEIEIANKLKTLRIENNLSLKKVADFLNITSSTILKYENTDITNIPIDNINKL 130 Query: 63 SEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 +E+ + S+ + ++I E ++ + N + K + I EL Sbjct: 131 AEIYKVNPSYILGLENYDKNEIHLSEEEKELILNLRKEKENNEKLFKESCKKYPELIAEL 190 >gi|256114435|ref|ZP_05455150.1| hypothetical protein Bmelb3E_16432 [Brucella melitensis bv. 3 str. Ether] Length = 650 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 30/105 (28%), Gaps = 3/105 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G + R G++ + L E I+ + E G L ++ L F Sbjct: 6 EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGI---EF 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++ E + + + +D ++ Sbjct: 63 GELVGARNDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKR 107 >gi|238923145|ref|YP_002936658.1| hypothetical protein EUBREC_0738 [Eubacterium rectale ATCC 33656] gi|238874817|gb|ACR74524.1| Hypothetical protein EUBREC_0738 [Eubacterium rectale ATCC 33656] Length = 80 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 27/61 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+R R +Q+++ + LG + +YE+G N + L + + + + Sbjct: 13 QRMRNLREDNDKTQQQIADYLGTSQTMYARYERGANELPIHHLLALCKYYNVSADYILGL 72 Query: 77 S 77 S Sbjct: 73 S 73 >gi|228993758|ref|ZP_04153663.1| hypothetical protein bpmyx0001_44830 [Bacillus pseudomycoides DSM 12442] gi|228765969|gb|EEM14618.1| hypothetical protein bpmyx0001_44830 [Bacillus pseudomycoides DSM 12442] Length = 73 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + R+R R MSQ LG+ + + Q + E+G I+ V E P+ Sbjct: 1 MKLQNRVREFRAKHRMSQGDLGKVIDSSRQTISLIERGDYAPSIVLSLKIAHVFEVPVEE 60 Query: 73 FFDVSPTVCSDI 84 F + D Sbjct: 61 IFTLVEGEKDDE 72 >gi|229188198|ref|ZP_04315276.1| hypothetical protein bcere0004_57020 [Bacillus cereus BGSC 6E1] gi|228595274|gb|EEK53016.1| hypothetical protein bcere0004_57020 [Bacillus cereus BGSC 6E1] Length = 68 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 24/58 (41%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +I+ R G+SQ KL E ++ Q + E I+ +L+S + F Sbjct: 3 NQIKKFREHKGISQGKLAEMCNVSRQTINAIENNKYDPSLELAFSIAFILDSTVDTLF 60 >gi|225575186|ref|ZP_03783796.1| hypothetical protein RUMHYD_03275 [Blautia hydrogenotrophica DSM 10507] gi|225037594|gb|EEG47840.1| hypothetical protein RUMHYD_03275 [Blautia hydrogenotrophica DSM 10507] Length = 89 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 24/71 (33%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G + R + GM+QE LG +G+ + E G + ++ L+ + Sbjct: 17 GNNLSHYRRLCGMTQEALGRAVGMNRTYISALEHGRANPTLKLMSTLAIALKVDVGNLLT 76 Query: 76 VSPTVCSDISS 86 + Sbjct: 77 IPNDYPISEEE 87 >gi|171915434|ref|ZP_02930904.1| probable transcription regulator [Verrucomicrobium spinosum DSM 4136] Length = 203 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 4/103 (3%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + + +RIR R+ G++ E++ E G+ + K E + L ++E L +S Sbjct: 4 VELAQRIRNARLKRGLTLEEVSESSGLAKGLLSKVENFRVTPTLTTLAKLTETLGIKLSE 63 Query: 73 FFDVSPTVCSDISSEENNVM----DFISTPDGLQLNRYFIQID 111 + + ++I + G +LN Y+ + Sbjct: 64 LLEGLDEKPRISVVRRSERKPIERNYIPSEAGNKLNNYYESLA 106 >gi|161619771|ref|YP_001593658.1| hypothetical protein BCAN_A1891 [Brucella canis ATCC 23365] gi|163845428|ref|YP_001623083.1| hypothetical protein BSUIS_B1330 [Brucella suis ATCC 23445] gi|254703616|ref|ZP_05165444.1| hypothetical protein Bsuib36_06776 [Brucella suis bv. 3 str. 686] gi|260568922|ref|ZP_05839390.1| transcriptional regulator [Brucella suis bv. 4 str. 40] gi|161336582|gb|ABX62887.1| Hypothetical protein BCAN_A1891 [Brucella canis ATCC 23365] gi|163676151|gb|ABY40261.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|260154306|gb|EEW89388.1| transcriptional regulator [Brucella suis bv. 4 str. 40] Length = 650 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 30/105 (28%), Gaps = 3/105 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G + R G++ + L E I+ + E G L ++ L F Sbjct: 6 EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGI---EF 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++ E + + + +D ++ Sbjct: 63 GELVGARNDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKR 107 >gi|160934629|ref|ZP_02082015.1| hypothetical protein CLOLEP_03502 [Clostridium leptum DSM 753] gi|156866082|gb|EDO59454.1| hypothetical protein CLOLEP_03502 [Clostridium leptum DSM 753] Length = 139 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 1/104 (0%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + RI R ++ ++ +G + + E N L +I E F Sbjct: 36 FIANRIYQLRNQKNVTAREMSLAIGQHKGYITQIENRQNLPSIQGLLYICEYFNITPEEF 95 Query: 74 FDVSPTVCSDISSEEN-NVMDFISTPDGLQLNRYFIQIDDVKVR 116 F S + + L++ + F ++ ++ Sbjct: 96 FADSTNPIKSKEIYADLKDLSSDQLDTILKIAKAFKALNQNSIQ 139 >gi|153853421|ref|ZP_01994830.1| hypothetical protein DORLON_00819 [Dorea longicatena DSM 13814] gi|149754207|gb|EDM64138.1| hypothetical protein DORLON_00819 [Dorea longicatena DSM 13814] Length = 125 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 44/117 (37%), Gaps = 4/117 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +RI+ G+S KL E LG + K G + A++++ I++ + + Sbjct: 3 ERIKSLCKDYGISMNKLEETLGFGKGYISKL--GNSTPNATKIKKIADYFNVSVDYLMTG 60 Query: 77 SPTVCSD--ISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + + ++ E V I L+ + D + + + ++ E+ Sbjct: 61 NESDTEKYYLNDETAQVAQEIFENKELKALFDVQKDMDPDDLKALHSMALALKRKER 117 >gi|16973422|gb|AAL32284.1|AF118548_4 hypothetical protein [Brucella abortus] Length = 650 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 30/105 (28%), Gaps = 3/105 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G + R G++ + L E I+ + E G L ++ L F Sbjct: 6 EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGI---EF 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++ E + + + +D ++ Sbjct: 63 GELVGARNDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKR 107 >gi|71279992|ref|YP_269199.1| DNA-binding protein [Colwellia psychrerythraea 34H] gi|71145732|gb|AAZ26205.1| DNA-binding protein [Colwellia psychrerythraea 34H] Length = 198 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 4/79 (5%) Query: 1 MVGNKKIPNPV----DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGA 56 M + V I +G +++ RM ++ ++ G + + K E Sbjct: 1 MSMTVASKHDVRAVRAIGIGAQLKSIRMRNKLTLKEAGNLTNLAPSTLSKIENEQISPTF 60 Query: 57 SRLQHISEVLESPISFFFD 75 + +Q ++ L + F Sbjct: 61 TVMQKLATGLNIELPQLFT 79 >gi|62290714|ref|YP_222507.1| Cro/CI family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|189024928|ref|YP_001935696.1| Cro/CI family transcriptional regulator [Brucella abortus S19] gi|225853293|ref|YP_002733526.1| hypothetical protein BMEA_A1902 [Brucella melitensis ATCC 23457] gi|254690004|ref|ZP_05153258.1| hypothetical protein Babob68_07506 [Brucella abortus bv. 6 str. 870] gi|254694495|ref|ZP_05156323.1| hypothetical protein Babob3T_07514 [Brucella abortus bv. 3 str. Tulya] gi|254698155|ref|ZP_05159983.1| hypothetical protein Babob28_10710 [Brucella abortus bv. 2 str. 86/8/59] gi|254700494|ref|ZP_05162322.1| hypothetical protein Bsuib55_06531 [Brucella suis bv. 5 str. 513] gi|254708298|ref|ZP_05170126.1| hypothetical protein BpinM_15413 [Brucella pinnipedialis M163/99/10] gi|254708850|ref|ZP_05170661.1| hypothetical protein BpinB_01038 [Brucella pinnipedialis B2/94] gi|254714691|ref|ZP_05176502.1| hypothetical protein BcetM6_15404 [Brucella ceti M644/93/1] gi|254717589|ref|ZP_05179400.1| hypothetical protein BcetM_14533 [Brucella ceti M13/05/1] gi|254731038|ref|ZP_05189616.1| hypothetical protein Babob42_07546 [Brucella abortus bv. 4 str. 292] gi|256030376|ref|ZP_05443990.1| hypothetical protein BpinM2_06958 [Brucella pinnipedialis M292/94/1] gi|256045452|ref|ZP_05448343.1| hypothetical protein Bmelb1R_13219 [Brucella melitensis bv. 1 str. Rev.1] gi|256061874|ref|ZP_05452007.1| hypothetical protein Bneo5_16155 [Brucella neotomae 5K33] gi|256160551|ref|ZP_05458237.1| hypothetical protein BcetM4_16231 [Brucella ceti M490/95/1] gi|256255754|ref|ZP_05461290.1| hypothetical protein BcetB_16060 [Brucella ceti B1/94] gi|256258259|ref|ZP_05463795.1| hypothetical protein Babob9C_13113 [Brucella abortus bv. 9 str. C68] gi|256263214|ref|ZP_05465746.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9] gi|260547047|ref|ZP_05822785.1| transcriptional regulator [Brucella abortus NCTC 8038] gi|260755540|ref|ZP_05867888.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260758763|ref|ZP_05871111.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260762597|ref|ZP_05874934.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|261214811|ref|ZP_05929092.1| cro/CI family transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261757497|ref|ZP_06001206.1| transcriptional regulator [Brucella sp. F5/99] gi|297249109|ref|ZP_06932817.1| hypothetical protein BAYG_03152 [Brucella abortus bv. 5 str. B3196] gi|62196846|gb|AAX75146.1| transcriptional regulator, Cro/CI family [Brucella abortus bv. 1 str. 9-941] gi|189020500|gb|ACD73222.1| transcriptional regulator, Cro/CI family [Brucella abortus S19] gi|225641658|gb|ACO01572.1| Hypothetical protein, conserved [Brucella melitensis ATCC 23457] gi|260095412|gb|EEW79290.1| transcriptional regulator [Brucella abortus NCTC 8038] gi|260669081|gb|EEX56021.1| conserved hypothetical protein [Brucella abortus bv. 4 str. 292] gi|260673023|gb|EEX59844.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260675648|gb|EEX62469.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260916418|gb|EEX83279.1| cro/CI family transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|261737481|gb|EEY25477.1| transcriptional regulator [Brucella sp. F5/99] gi|263093166|gb|EEZ17272.1| transcriptional regulator [Brucella melitensis bv. 2 str. 63/9] gi|297174242|gb|EFH33599.1| hypothetical protein BAYG_03152 [Brucella abortus bv. 5 str. B3196] Length = 650 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 30/105 (28%), Gaps = 3/105 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G + R G++ + L E I+ + E G L ++ L F Sbjct: 6 EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGI---EF 62 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++ E + + + +D ++ Sbjct: 63 GELVGARNDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKR 107 >gi|47095795|ref|ZP_00233400.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|254899216|ref|ZP_05259140.1| transcription regulator [Listeria monocytogenes J0161] gi|254912643|ref|ZP_05262655.1| DNA-binding protein [Listeria monocytogenes J2818] gi|254936970|ref|ZP_05268667.1| DNA-binding protein [Listeria monocytogenes F6900] gi|47015799|gb|EAL06727.1| DNA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|258609573|gb|EEW22181.1| DNA-binding protein [Listeria monocytogenes F6900] gi|293590638|gb|EFF98972.1| DNA-binding protein [Listeria monocytogenes J2818] Length = 423 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 38/103 (36%), Gaps = 1/103 (0%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G RI+ R ++ + + + + I+ + E G+ L HI+ L+ P Sbjct: 4 IGLRIKNIRKEKKLTLKDVAQGI-ISVPYLANIENGIKVASLETLIHIARRLDIPEEILL 62 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQ 117 + E + + + + + ++ +I + + Sbjct: 63 MSEDEENRALLKELDEIFELLVCSNLKEIESRLEKIAENIDLR 105 >gi|323141521|ref|ZP_08076407.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] gi|322413980|gb|EFY04813.1| DNA-binding helix-turn-helix protein [Phascolarctobacterium sp. YIT 12067] Length = 104 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 1/103 (0%) Query: 7 IPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + VD VG RI+ R+ + Q +L + +G++ + E G + L ++ + Sbjct: 1 MAKQVDYKAVGLRIKTLRLKNNIYQTELAKNIGVSQTHMSNIESGRAGLTLENLVKMTNI 60 Query: 66 LESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFI 108 I + + LQ+ + Sbjct: 61 FNCGIDDIVFGEEKAKKETQTTSLENFTMQDIVQALQMLKTIK 103 >gi|258591602|emb|CBE67903.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 71 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 33/68 (48%) Query: 7 IPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 + + + G+++R RR+ L +SQE+L E G+ V E+G + + ++ L Sbjct: 1 MNTDILLRFGQKVRQRRLSLAISQEELAERAGVHRTYVGMIERGEKNITLRNIVKFAKAL 60 Query: 67 ESPISFFF 74 + P+ Sbjct: 61 DMPVHNLM 68 >gi|254417612|ref|ZP_05031348.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC 7420] gi|196175582|gb|EDX70610.1| Helix-turn-helix domain protein [Microcoleus chthonoplastes PCC 7420] Length = 91 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 2/79 (2%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKG--VNRVGASRLQHISEVLESPISFFFDV 76 +++ R L ++QE+L I + ++E G R +++ + L I D Sbjct: 13 LKILRERLNLTQEELARQCRIPLRTYVRWETGEATPRPTIPQVKALCRELGVSIEDLPDE 72 Query: 77 SPTVCSDISSEENNVMDFI 95 + + D + Sbjct: 73 FGPMQVSAKDNPRSQSDDV 91 >gi|157325326|ref|YP_001468746.1| gp42 [Listeria phage B054] gi|300765823|ref|ZP_07075797.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] gi|66733331|gb|AAY53147.1| gp42 [Listeria phage B054] gi|300513400|gb|EFK40473.1| cro/CI family transcriptional regulator [Listeria monocytogenes FSL N1-017] Length = 61 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 26/57 (45%) Query: 19 IRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 ++ R+ ++Q+++ + GI E+G R R + I+ L + FF+ Sbjct: 4 LKKYRLDKDLTQQEVADQCGIPKNTYASIEQGKRRPSPERAKIIASNLGFDWTIFFN 60 >gi|86738850|ref|YP_479250.1| XRE family transcriptional regulator [Frankia sp. CcI3] gi|86565712|gb|ABD09521.1| transcriptional regulator, XRE family [Frankia sp. CcI3] Length = 111 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 31/80 (38%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P G+R+ R ++Q + E GI+ + EKG R+ +L ++ + Sbjct: 5 PAYQEFGERLAQTRRHASLTQRDVAERSGISRPTIANIEKGRQRLLYHQLLDLAHAIGVD 64 Query: 70 ISFFFDVSPTVCSDISSEEN 89 PT ++ ++ Sbjct: 65 PRDLLPAPPTPSPALAHLDD 84 >gi|24379248|ref|NP_721203.1| hypothetical protein SMU.790 [Streptococcus mutans UA159] gi|24377163|gb|AAN58509.1|AE014920_7 conserved hypothetical protein [Streptococcus mutans UA159] Length = 79 Score = 41.3 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 33/74 (44%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G I R GM+Q +L E + +T + V K+E+ ++ + + ++E+ E + Sbjct: 6 LGMIISSLRKEKGMTQLELAEKMRVTDKAVSKWERDLSFPDINSIPKLAEIFEVSVDDLM 65 Query: 75 DVSPTVCSDISSEE 88 V I + Sbjct: 66 QVKTNTKETIGKNK 79 >gi|331091369|ref|ZP_08340208.1| hypothetical protein HMPREF9477_00851 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404233|gb|EGG83780.1| hypothetical protein HMPREF9477_00851 [Lachnospiraceae bacterium 2_1_46FAA] Length = 119 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 40/119 (33%), Gaps = 2/119 (1%) Query: 2 VGNKKIPNPVD-INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 + K + D +G IR R G+S+ LG+ + + + E + Sbjct: 1 MRKTKETHTFDFRPLGLAIREARERAGLSRNDLGDKVFYGERHIADIENTGSHPSFQLFH 60 Query: 61 HISEVLESPIS-FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 + + + +F+ S + +D +S + + I + + +K Sbjct: 61 DLVTMFNISVDEYFYPEKKIAKSTTRRQIETSLDLLSDSELKIIQGTIDGILNSRESKK 119 >gi|329936275|ref|ZP_08286068.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] gi|329304385|gb|EGG48265.1| DNA-binding protein [Streptomyces griseoaurantiacus M045] Length = 275 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 2/131 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G +R R G++ + + LGI QV E G + V RL+ I+ + Sbjct: 4 LRLGAELRKLRERAGLTSTQAAQLLGIKQNQVSNMEAGRHGVSPDRLRTIACHYDCSDKA 63 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKK 132 + T+ D I L L ++R + + + + + Sbjct: 64 LVEALATMTPDRRRGWWEEYREILPTGMLDLAELEHHAT--RLRTAVTVHIPGLFQTTEY 121 Query: 133 YRTIEEECMVE 143 R I + + E Sbjct: 122 AREIFRQAVPE 132 >gi|330830827|ref|YP_004393779.1| Helix-turn-helix domain-containing protein [Aeromonas veronii B565] gi|328805963|gb|AEB51162.1| Helix-turn-helix domain protein [Aeromonas veronii B565] Length = 116 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 43/102 (42%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VGK I +R G +QE++ E L I + V + E+G+ RL ++++ ++ F Sbjct: 13 VGKAIGRQRNHAGFTQEQVAEHLNIGMEAVSRMERGIVVPTVVRLAELAQLFGCELADFL 72 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVR 116 + ++ + + + D L ++ + R Sbjct: 73 RETSNRPTEQGIVLSQQLARLDDADRTLLLETVERLVERLAR 114 >gi|327490523|gb|EGF22304.1| transcriptional regulator [Streptococcus sanguinis SK1058] Length = 71 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 27/70 (38%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R++ R MSQ +L + +G++ Q + E +++ L++ ++ F Sbjct: 2 NRVKEFRKEKKMSQLELAKSIGVSRQTINMIENNKYNPTLELCINLARALDTDLNALFWE 61 Query: 77 SPTVCSDISS 86 D Sbjct: 62 PQLADEDSED 71 >gi|312602253|ref|YP_004022098.1| transcriptional regulatory protein [Burkholderia rhizoxinica HKI 454] gi|312169567|emb|CBW76579.1| Transcriptional regulatory protein [Burkholderia rhizoxinica HKI 454] Length = 320 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 3/118 (2%) Query: 9 NPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLES 68 +P +G+R+RL R GM+++ L G++ + + E GV L+ I+ L Sbjct: 35 DPFLTAMGERVRLLRARRGMTRKSLAAETGLSERHLANLESGVGNASVLVLRQIALALNC 94 Query: 69 PISFFFDVSPTVCSD--ISSEENNVMDFIS-TPDGLQLNRYFIQIDDVKVRQKIIELV 123 P++ T ++ + + + D S + L F Q R I L+ Sbjct: 95 PLAEVIGDETTSSAEWLLIRQLLHGRDPASLQRARMALADLFEQTQRDPDRNHRIALI 152 >gi|302385264|ref|YP_003821086.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] gi|302195892|gb|ADL03463.1| transcriptional regulator, XRE family [Clostridium saccharolyticum WM1] Length = 160 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 19/129 (14%), Positives = 51/129 (39%), Gaps = 6/129 (4%) Query: 13 INVGKRIRLRRMILGMSQEKLG-ECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 + +G+ I+ RR LG+SQE+L + + + K E + S++ I+ L++ + Sbjct: 1 MEIGQIIKRRREELGISQEELALKAGYKSRSSINKIEVDGRGLPQSKIIAIASALKTTPA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEK 131 + S S ++ ++ F ++++ ++ + + + E Sbjct: 61 YLMGWESDNASAFSYVSGCFGEYAG-----EMLENFQRLNEKGQKEALKRVKEMVHIPEY 115 Query: 132 KYRTIEEEC 140 + + Sbjct: 116 SKDSSIVKL 124 >gi|302335294|ref|YP_003800501.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] gi|301319134|gb|ADK67621.1| transcriptional regulator, XRE family [Olsenella uli DSM 7084] Length = 136 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 12/108 (11%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R R +G+SQ ++ LG++ + +E G +GA R++ + ++L + Sbjct: 32 NNLRYLRDKVGLSQVQVAAQLGVSSKTYSSWETGRTELGAERIRALCDLLGCTPNDVLGY 91 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + + ++ VR ++E++R Sbjct: 92 RGHTSFAPVTTIEET-----------IVDLYGRLA-PNVRMAVLEIMR 127 >gi|288560390|ref|YP_003423876.1| transcriptional regulator [Methanobrevibacter ruminantium M1] gi|288543100|gb|ADC46984.1| transcriptional regulator [Methanobrevibacter ruminantium M1] Length = 113 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 5/100 (5%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +G+R++ R G+SQ L LGI+ + + E G + S L + + S+ Sbjct: 2 KKIGQRLQGLRESKGLSQSDLANYLGISQPLLSQIEAGNRNLNLSLLDKLCALYGCTDSY 61 Query: 73 FFDVSPTVCSDISS-----EENNVMDFISTPDGLQLNRYF 107 + S +D IS+ + LN F Sbjct: 62 ILCKDDEYNAVNFSFRSKNAAREDLDCISSVHKIVLNMRF 101 >gi|284103426|ref|ZP_06386091.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3] gi|283830260|gb|EFC34502.1| conserved hypothetical protein [Candidatus Poribacteria sp. WGA-A3] Length = 255 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 26/67 (38%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +GK I+ +R ++Q L LG++ E+G + + ++ + + + F Sbjct: 1 MLGKFIQRQRTERNLTQAYLASELGMSRPTYMHIERGERELTVIEARTLAGIFDMSLDDF 60 Query: 74 FDVSPTV 80 Sbjct: 61 LAGREPR 67 >gi|251778290|ref|ZP_04821210.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082605|gb|EES48495.1| transcriptional regulator, Cro/CI family [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 183 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 43/87 (49%), Gaps = 1/87 (1%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVN-RVGASRL 59 M + + + +G RI+ RR L ++ +++G+ +G+ +Q+YEKG+ ++ + Sbjct: 1 MKKEIEQSDLTLLEIGNRIQERRKELKLTLQEVGDIVGVASSTIQRYEKGLIAKMKLPVI 60 Query: 60 QHISEVLESPISFFFDVSPTVCSDISS 86 + I++ + + ++++ Sbjct: 61 ESIAKAINVNPVWLIRKDAKKETELAD 87 >gi|228911367|ref|ZP_04075170.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] gi|228848304|gb|EEM93155.1| Transcriptional regulator, MerR [Bacillus thuringiensis IBL 200] Length = 130 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 40/105 (38%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +GK I+ R I G++ + + + ++ V +EKG + +++ I+ ++ Sbjct: 6 LGKNIKKLRAIKGVNLTEFAKAMSVSVSAVSSWEKGEKKPRLNKISQIAAYFNVTEAYLL 65 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKI 119 + ++ ++ ++ + + R+ I Sbjct: 66 THNIRDEDLLNETGEEPIERLARLLYDRFMSVPDKYKPEVERELI 110 >gi|229014216|ref|ZP_04171337.1| hypothetical protein bmyco0001_46210 [Bacillus mycoides DSM 2048] gi|229062694|ref|ZP_04200003.1| hypothetical protein bcere0026_47600 [Bacillus cereus AH603] gi|228716664|gb|EEL68361.1| hypothetical protein bcere0026_47600 [Bacillus cereus AH603] gi|228747170|gb|EEL97052.1| hypothetical protein bmyco0001_46210 [Bacillus mycoides DSM 2048] Length = 81 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 29/63 (46%) Query: 12 DINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPIS 71 D+ + R+R R +SQ LG+ +G + Q + E+G I+++ +P+ Sbjct: 6 DMKLQNRVREFRAKHRLSQGDLGKAIGSSRQTISLIERGDYAPSIVLSLKIAQIFGAPVE 65 Query: 72 FFF 74 F Sbjct: 66 EIF 68 >gi|229073705|ref|ZP_04206818.1| Transcriptional regulator, XRE [Bacillus cereus F65185] gi|228709414|gb|EEL61475.1| Transcriptional regulator, XRE [Bacillus cereus F65185] Length = 112 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 44/111 (39%), Gaps = 8/111 (7%) Query: 15 VGKRIRLRR-MILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G RI+ R +L MSQ + E + + YE G ++ +S + + Sbjct: 6 IGVRIKEIRVELLKMSQLEFAEAINAKKSMISLYENGHRNPSRETVEKMSRLSGVSADYI 65 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 +S + + ++ D L+ I D K R++II +++ Sbjct: 66 MGISEHKNLNSAESKSLKDD-------LKEIMLQINDLDPKKREEIINMIK 109 >gi|57233927|ref|YP_182049.1| DNA-binding protein [Dehalococcoides ethenogenes 195] gi|57224375|gb|AAW39432.1| DNA-binding protein [Dehalococcoides ethenogenes 195] Length = 69 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++R+ R I ++QE+L + LGIT Q V E G I+ + ++PI F Sbjct: 3 NKLRVLRAIHNLTQEELADKLGITRQTVIAIEWGKYSPSLELAFKIASLFKAPIEEIFTY 62 Query: 77 SPTVCSD 83 + Sbjct: 63 NTEQERQ 69 >gi|322372373|ref|ZP_08046909.1| transcriptional regulator [Streptococcus sp. C150] gi|321277415|gb|EFX54484.1| transcriptional regulator [Streptococcus sp. C150] Length = 307 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 3/123 (2%) Query: 16 GKRIRLRRMILGMSQEKLGECLGI-TFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 G R+R R+ G+++EK E + + +Q+ + E G ++ L+H++ L +S Sbjct: 7 GHRLRELRLAQGLTKEKFCEGDEVLSVRQLTRIETGKSQPKLETLEHLARRLNISLSELL 66 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYR 134 + S + E N+ + L +++ D K+ + I + + E++ Sbjct: 67 -GERAIGSKLPVEYLNLKYQLMHATSLDKPNNLMKL-DEKLGKIIDIYYDDLPADEQRVV 124 Query: 135 TIE 137 I Sbjct: 125 DIL 127 >gi|315649148|ref|ZP_07902239.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] gi|315275464|gb|EFU38821.1| transcriptional regulator, XRE family protein [Paenibacillus vortex V453] Length = 120 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 39/108 (36%), Gaps = 3/108 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + +RI GM+++ E LGI+ +++G ++L I+ + + Sbjct: 4 IYQRIEHLIESRGMTKKAFCETLGISTGNFGDWKRGKTTPSTNKLIEIAAFFSVSLDWLI 63 Query: 75 DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIEL 122 + + + P+ L + ++ + ++ IE Sbjct: 64 IGKGSPNTRVRESRGEYE---VDPEAADLAMSGLAENEKEFIREYIEF 108 >gi|315126026|ref|YP_004068029.1| DNA-binding protein [Pseudoalteromonas sp. SM9913] gi|315014540|gb|ADT67878.1| DNA-binding protein [Pseudoalteromonas sp. SM9913] Length = 65 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+++ R +Q KL E L ++ Q + EKG + + + I FD Sbjct: 3 NRLKVLRAEHNFTQAKLAELLDVSRQTINAIEKGKFDPSLPLAFKAARLFKLKIEDIFDD 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|310830222|ref|YP_003965322.1| probable transcriptional regulator [Ketogulonicigenium vulgare Y25] gi|308753128|gb|ADO44271.1| probable transcriptional regulator [Ketogulonicigenium vulgare Y25] Length = 197 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 VG +R RR+ LG++Q + + G+T + + E+G+ S L IS+VL F Sbjct: 8 VGDALRARRIALGITQRVVADQAGLTTGFISQVERGLTAPSLSSLHAISKVLGLSPLQFI 67 Query: 75 DVSPTVCS 82 D P Sbjct: 68 DTPPAPQQ 75 >gi|291528616|emb|CBK94202.1| Helix-turn-helix [Eubacterium rectale M104/1] Length = 111 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 9/113 (7%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R L +++ + L I+ +YE G + I+ + F + + Sbjct: 6 ERLIQLRNTLNINKAEAARRLNISPMVYGRYENGQRDPSYPTVCFIAHTFNCNVDFLYGI 65 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID-DVKVRQKIIELVRSIVS 128 S D +S+ + +L I D V +I+ R ++ Sbjct: 66 SDKTDPDYI--------IVSSSNDPELYSLINIIKQDSNVEGRILTYARKLLE 110 >gi|291518909|emb|CBK74130.1| Predicted transcription factor, homolog of eukaryotic MBF1 [Butyrivibrio fibrisolvens 16/4] Length = 104 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 32/77 (41%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G++I+ R+ LGM+Q ++ + L +T + E G + L + S+++ + Sbjct: 6 GEQIKNYRINLGMTQNQVAKELDVTPGYISNVENGRTAMSLRLLIYYSKLMGITLDELVG 65 Query: 76 VSPTVCSDISSEENNVM 92 +++ Sbjct: 66 KLEPAYQKSATDNALWN 82 >gi|270262060|ref|ZP_06190332.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270043936|gb|EFA17028.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 200 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 14/102 (13%), Positives = 38/102 (37%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V+ V I+ R ++ ++L G++ + + EKG + L I+ L + Sbjct: 18 VNEAVSSTIKQHRKDKKLTLDELSRKAGVSKGMLVEIEKGTANPSIAILCKIAAALGLSV 77 Query: 71 SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDD 112 + +V+ + + +++ + G + + Sbjct: 78 ADIVNVTDAPSAYLIDKKDIPTLWTGDSGGTARLLAGTRGPN 119 >gi|268318595|ref|YP_003292251.1| hypothetical protein FI9785_96 [Lactobacillus johnsonii FI9785] gi|262396970|emb|CAX65984.1| hypothetical protein FI9785_96 [Lactobacillus johnsonii FI9785] Length = 269 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 1/99 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ + R LG++Q ++ + ++ K E+ ++ +G + L I + ++ Sbjct: 1 MTIGEALLNLRKQLGLTQTEMAANV-VSTSFYSKVERNIHDIGTNDLLQILNKHQINATY 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111 FF+ + N + +L + +ID Sbjct: 60 FFENLNDKENISEDIMNRISVAFEQKSKDKLLKIKQEID 98 >gi|240138702|ref|YP_002963174.1| putative shikimate kinase with helix-turn-helix domain [Methylobacterium extorquens AM1] gi|240008671|gb|ACS39897.1| putative shikimate kinase with helix-turn-helix domain [Methylobacterium extorquens AM1] Length = 299 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 48/128 (37%), Gaps = 10/128 (7%) Query: 1 MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60 M +G+R+R R + G+S++ L + G++ + + + E G V L+ Sbjct: 1 MTDAADQEASFLNELGRRVRHARTVRGLSRKLLSQASGLSERYIAQLESGQGNVSIILLR 60 Query: 61 HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQI-----DDVKV 115 ++ + + + SS+ + D + Q+ + + + Sbjct: 61 RVANAMGMRLDDLV-----ATQEASSDWRVIRDLLDQASPDQIALAKSALAGSTGTESRT 115 Query: 116 RQKIIELV 123 ++ + LV Sbjct: 116 IRRRVALV 123 >gi|256851295|ref|ZP_05556684.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN] gi|260660719|ref|ZP_05861634.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN] gi|282933260|ref|ZP_06338647.1| transcriptional regulator, XRE family [Lactobacillus jensenii 208-1] gi|297206164|ref|ZP_06923559.1| conserved hypothetical protein [Lactobacillus jensenii JV-V16] gi|256616357|gb|EEU21545.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN] gi|260548441|gb|EEX24416.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN] gi|281302764|gb|EFA94979.1| transcriptional regulator, XRE family [Lactobacillus jensenii 208-1] gi|297149290|gb|EFH29588.1| conserved hypothetical protein [Lactobacillus jensenii JV-V16] Length = 272 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 1/101 (0%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + VG+ ++ R L ++Q + + I+ K E ++ + + L I + I Sbjct: 1 MTVGEALKQERKNLNLTQSAMAAEV-ISPSFYSKVENNLHEINVNDLLAILDAHCIDIPS 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDV 113 FF + N D + + + ++ Sbjct: 60 FFMKIDSKVKTDYFNLNTFTDRVLDIWYNKDLKQLAELQTE 100 >gi|218689855|ref|YP_002398067.1| putative repressor protein CI [Escherichia coli ED1a] gi|260870771|ref|YP_003237173.1| putative repressor protein CI [Escherichia coli O111:H- str. 11128] gi|218427419|emb|CAR08317.2| putative repressor protein CI [Escherichia coli ED1a] gi|257767127|dbj|BAI38622.1| putative repressor protein CI [Escherichia coli O111:H- str. 11128] gi|323177632|gb|EFZ63217.1| helix-turn-helix family protein [Escherichia coli 1180] Length = 230 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 35/93 (37%), Gaps = 1/93 (1%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ-HISEVLESPIS 71 +N+G R+R R M L E +G+ + + E G + + +I+ L I+ Sbjct: 1 MNIGNRVRQLRQAKNMKIADLAEAIGVDAANISRLETGKQKQFTEQALSNIARSLGVDIA 60 Query: 72 FFFDVSPTVCSDISSEENNVMDFISTPDGLQLN 104 F + + + + + +++ Sbjct: 61 DLFTSDLKSNTVCKNSISEDVAQVKDVFRIEML 93 >gi|199598993|ref|ZP_03212401.1| putative regulatory protein [Lactobacillus rhamnosus HN001] gi|199590101|gb|EDY98199.1| putative regulatory protein [Lactobacillus rhamnosus HN001] Length = 106 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 41/76 (53%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G++I+ RR L S+E+L + + + QQV ++EKG++ +L IS+ LE + Sbjct: 3 IGEQIKDRREALAWSKEELAQAVNGSVQQVSRWEKGISYPNIKQLIAISDRLELSLDNLI 62 Query: 75 DVSPTVCSDISSEENN 90 P + I ++N Sbjct: 63 KSDPKLQKTIQIDKNA 78 >gi|170023869|ref|YP_001720374.1| XRE family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|169750403|gb|ACA67921.1| transcriptional regulator, XRE family [Yersinia pseudotuberculosis YPIII] Length = 133 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 27/57 (47%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +R+RL +SQ +L E LG+ ++EKG + I++VL+ + Sbjct: 18 ERLRLLLEARNLSQVRLSELLGVDPCAYNRWEKGATAPHLDTVIKIADVLQVTLDEL 74 >gi|163815718|ref|ZP_02207090.1| hypothetical protein COPEUT_01899 [Coprococcus eutactus ATCC 27759] gi|158449023|gb|EDP26018.1| hypothetical protein COPEUT_01899 [Coprococcus eutactus ATCC 27759] Length = 66 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + V IR R G+ Q+ L +G + + V + E+G + A + IS+ + Sbjct: 1 MAVTNNIREIREQRGIYQDDLAAAIGFSTKTVGRIERGDSTPSAEFMLRISKYFNLLVED 60 Query: 73 FFDVSP 78 F V Sbjct: 61 VFHVED 66 >gi|126452186|ref|YP_001064380.1| XRE family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|242317669|ref|ZP_04816685.1| transcriptional regulator, XRE family [Burkholderia pseudomallei 1106b] gi|126225828|gb|ABN89368.1| transcriptional regulator, XRE family [Burkholderia pseudomallei 1106a] gi|242140908|gb|EES27310.1| transcriptional regulator, XRE family [Burkholderia pseudomallei 1106b] Length = 107 Score = 41.3 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 15/113 (13%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++IR R G++ ++L + + + K R A R+ I+ L ++ Sbjct: 4 LGEKIRTLRKRQGLTLDQLALQVSASKSSIWELENKEKARPSADRIDAIARALGVTSAYL 63 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSI 126 D + T S ++E R + Q+D+ V++++ +++ + Sbjct: 64 LDDTQTEPSRKVADEAFF-------------RKYEQLDEP-VKKQLQDILEVL 102 >gi|323527802|ref|YP_004229955.1| helix-turn-helix domain-containing protein [Burkholderia sp. CCGE1001] gi|323384804|gb|ADX56895.1| helix-turn-helix domain protein [Burkholderia sp. CCGE1001] Length = 143 Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 1/73 (1%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R++ R LGM+Q G++ YE G R + L+ I++ + + Sbjct: 6 QRLKEERQRLGMNQTTFAALGGVSKDAQLNYENGSRRPDSGYLEAIAK-NGVDVLYVLTG 64 Query: 77 SPTVCSDISSEEN 89 + E + Sbjct: 65 QRNASHLPADEAD 77 >gi|307243564|ref|ZP_07525711.1| toxin-antitoxin system, antitoxin component, Xre family [Peptostreptococcus stomatis DSM 17678] gi|306493064|gb|EFM65070.1| toxin-antitoxin system, antitoxin component, Xre family [Peptostreptococcus stomatis DSM 17678] Length = 103 Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 32/88 (36%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +N+G +IR R LG+SQ +L E L + + + + E V L ++ + + Sbjct: 1 MNIGYKIRKLREELGLSQLELSEKLNLNNRILSRIELNERSVRDDELVIFADFFDVSTDY 60 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDG 100 + + + D Sbjct: 61 LLGRTNVRNHPETFAAHTDEDMSDEAKA 88 >gi|302521517|ref|ZP_07273859.1| transcriptional regulator [Streptomyces sp. SPB78] gi|302430412|gb|EFL02228.1| transcriptional regulator [Streptomyces sp. SPB78] Length = 276 Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 20/60 (33%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G ++R R G +QE L + + + E G + + + F Sbjct: 15 ALGVKLRQLRKARGWTQEDLADRSAYSPTHISAIETGRKPPTLRLSRDLDRIFGLSEDTF 74 >gi|288870406|ref|ZP_06113975.2| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] gi|288867355|gb|EFC99653.1| toxin-antitoxin system, antitoxin component, Xre family [Clostridium hathewayi DSM 13479] Length = 100 Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 9/98 (9%) Query: 26 LGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVSPTVCSDIS 85 +G++QE+L E +G ++ Q E+G + + I+ L + + + ++ + Sbjct: 3 MGLTQEELAEKIGRAYKYCQDIERGTCGMSIDTMLSIAACLNISLDYLIYGNNEDSTEFA 62 Query: 86 SEENNVMDFIS---------TPDGLQLNRYFIQIDDVK 114 + I L L + F++ D + Sbjct: 63 DLDTEQQAVIEILGNCSHKKKRYALDLLKLFMKACDER 100 >gi|257791126|ref|YP_003181732.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|317488144|ref|ZP_07946719.1| hypothetical protein HMPREF1023_00417 [Eggerthella sp. 1_3_56FAA] gi|257475023|gb|ACV55343.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 2243] gi|316912772|gb|EFV34306.1| hypothetical protein HMPREF1023_00417 [Eggerthella sp. 1_3_56FAA] Length = 71 Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 28/63 (44%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 I +GK I++ R +SQ + +G + + E G VG L I++ L+ + Sbjct: 8 IILGKTIKMLREEQHLSQRRFALMVGTNQTHLWQIECGQVSVGIDLLCRIADGLDIKVKD 67 Query: 73 FFD 75 D Sbjct: 68 LID 70 >gi|256848775|ref|ZP_05554209.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|295692650|ref|YP_003601260.1| regulatory protein munl [Lactobacillus crispatus ST1] gi|256714314|gb|EEU29301.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US] gi|295030756|emb|CBL50235.1| Regulatory protein munl [Lactobacillus crispatus ST1] Length = 249 Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 47/117 (40%), Gaps = 3/117 (2%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + +G+ + R ++QE++ + + + E G + + A L I ++ Sbjct: 1 MMIGEHFKRVRNSKNLTQEQMAAGI-VNRSFYSRVENGSSSITADNLMKILYKHGLAMTE 59 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSS 129 F T S+I + ++ + D L L ++ VR K L++ +++ Sbjct: 60 FLRDFDTSESNIETYQDKITVAYINKDILALKDIYLHFKYEDVRTK--RLLKFLIAE 114 >gi|228962292|ref|ZP_04123718.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797391|gb|EEM44578.1| Transcriptional regulator, Xre [Bacillus thuringiensis serovar pakistani str. T13001] Length = 76 Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 10 PVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESP 69 P+D IRL R G+S + + L I + +Q E G ASR I+E P Sbjct: 5 PIDA---TNIRLARENKGISINQCSKDLNIPYGVLQAIETGRKSTIASRAIIIAEYFNLP 61 Query: 70 ISFFFD 75 +S F Sbjct: 62 VSELFS 67 >gi|229191205|ref|ZP_04318193.1| HTH-type transcriptional regulator ansR [Bacillus cereus ATCC 10876] gi|228592220|gb|EEK50051.1| HTH-type transcriptional regulator ansR [Bacillus cereus ATCC 10876] Length = 125 Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 4/122 (3%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 +R+ R S ++ + LGI YE G L I+++ ++ + + Sbjct: 3 ERLSKLRKNQKWSLQETADRLGIAKSTYAGYENGYRLPSLQSLSKIADLFDTSVDYILGR 62 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVRSIVSSEKKYRTI 136 + + + + L + ++ I VRS K Sbjct: 63 IEHSHQNKDVID---ITRLLNDSDSTLLIDGEALSTEEIID-FIAFVRSKRELSSKRIEN 118 Query: 137 EE 138 E Sbjct: 119 IE 120 >gi|225628403|ref|ZP_03786437.1| Cro/CI family transcriptional regulator [Brucella ceti str. Cudo] gi|237816216|ref|ZP_04595211.1| Cro/CI family transcriptional regulator [Brucella abortus str. 2308 A] gi|225616249|gb|EEH13297.1| Cro/CI family transcriptional regulator [Brucella ceti str. Cudo] gi|237788678|gb|EEP62891.1| Cro/CI family transcriptional regulator [Brucella abortus str. 2308 A] Length = 652 Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats. Identities = 13/105 (12%), Positives = 30/105 (28%), Gaps = 3/105 (2%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G + R G++ + L E I+ + E G L ++ L F Sbjct: 8 EIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGI---EF 64 Query: 74 FDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQK 118 ++ E + + + +D ++ Sbjct: 65 GELVGARNDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKR 109 >gi|311748183|ref|ZP_07721968.1| hypothetical protein ALPR1_17828 [Algoriphagus sp. PR1] gi|126576672|gb|EAZ80920.1| hypothetical protein ALPR1_17828 [Algoriphagus sp. PR1] Length = 63 Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 R+R R GM+QE L E +G++ Q + EK +S++ E PI F Sbjct: 3 NRVRDFRTAKGMTQEDLAEIIGVSRQTINAIEKEKFDPSLPTAFKMSKLFEKPIEDIFQF 62 Query: 77 S 77 Sbjct: 63 E 63 >gi|134045852|ref|YP_001097338.1| XRE family transcriptional regulator [Methanococcus maripaludis C5] gi|132663477|gb|ABO35123.1| transcriptional regulator, XRE family [Methanococcus maripaludis C5] Length = 66 Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 28/63 (44%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDVS 77 RI+ R M+QE+LG+ +G+ + + EKG IS+ L++ I F Sbjct: 4 RIKEYRAKYDMTQEELGKIVGVRRETISFLEKGKYNPSLKLAHSISKALDTTIDELFIFE 63 Query: 78 PTV 80 Sbjct: 64 DDE 66 >gi|90962809|ref|YP_536724.1| transcriptional regulator [Lactobacillus salivarius UCC118] gi|90822003|gb|ABE00641.1| Transcriptional regulator [Lactobacillus salivarius UCC118] gi|300215422|gb|ADJ79835.1| Transcriptional regulator [Lactobacillus salivarius CECT 5713] Length = 376 Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 42/93 (45%) Query: 17 KRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFDV 76 ++++ R+ G++++ L + GI+ Q + YE G G+ L I +VL+ P ++F Sbjct: 8 EKLKEARISRGLTKKALADRTGISRQMISNYELGKTNPGSKNLLSIIKVLDFPFTYFTAE 67 Query: 77 SPTVCSDISSEENNVMDFISTPDGLQLNRYFIQ 109 S T + + + D + F + Sbjct: 68 SKTFYEGTTFFRSQSAATKKSRDMQSIRLKFQK 100 >gi|107025545|ref|YP_623056.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116693273|ref|YP_838806.1| XRE family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170737459|ref|YP_001778719.1| XRE family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105894919|gb|ABF78083.1| transcriptional regulator, XRE family [Burkholderia cenocepacia AU 1054] gi|116651273|gb|ABK11913.1| transcriptional regulator, XRE family [Burkholderia cenocepacia HI2424] gi|169819647|gb|ACA94229.1| transcriptional regulator, XRE family [Burkholderia cenocepacia MC0-3] Length = 107 Score = 41.0 bits (94), Expect = 0.049, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 3/103 (2%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQ-VQKYEKGVNRVGASRLQHISEVLESPISFF 73 +G++IR R L ++ + L E + + + V R A ++ I+ VL + F Sbjct: 5 LGEKIRAERKRLKLTLDALAEKTESSKSYIWELENRPVVRPSADKISKIAAVLGVTVEFL 64 Query: 74 FDVSPTVCSDISSEENNVMDF--ISTPDGLQLNRYFIQIDDVK 114 D S +E + QL ++ IDD + Sbjct: 65 LDDEKQEASQSDVDEAFFRRIGRLDATKRAQLEKFLKAIDDDE 107 >gi|328464873|gb|EGF36173.1| transcriptional regulator [Lactobacillus rhamnosus MTCC 5462] Length = 56 Score = 41.0 bits (94), Expect = 0.050, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 22/53 (41%) Query: 22 RRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 R ++Q++L + + +T Q + E S ++ L++ + F Sbjct: 2 LRTQQHLTQQELADAVNVTRQTINAIENNKYDPTLSLAFALARQLQTTVDHLF 54 >gi|324013609|gb|EGB82828.1| hypothetical protein HMPREF9533_02325 [Escherichia coli MS 60-1] Length = 125 Score = 41.0 bits (94), Expect = 0.050, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 9/112 (8%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 +++G R++ R LG SQ + E +G +++ ++EK + GA L + L + + Sbjct: 11 MSLGSRLKEERNRLGFSQSEFAELVGASYKSQLRWEKDESAPGADALAIWAT-LGLDVLY 69 Query: 73 FFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIELVR 124 + + +P+ +L F ++ + R+ +E+ R Sbjct: 70 VVTG-------QRGDVMTNVVPKMSPEKQKLMDAFDEMT-PEQRRSFLEVGR 113 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.308 0.121 0.312 Lambda K H 0.267 0.0375 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,069,978,052 Number of Sequences: 14124377 Number of extensions: 29076764 Number of successful extensions: 227208 Number of sequences better than 10.0: 10000 Number of HSP's better than 10.0 without gapping: 14664 Number of HSP's successfully gapped in prelim test: 4002 Number of HSP's that attempted gapping in prelim test: 211280 Number of HSP's gapped (non-prelim): 19031 length of query: 144 length of database: 4,842,793,630 effective HSP length: 108 effective length of query: 36 effective length of database: 3,317,360,914 effective search space: 119424992904 effective search space used: 119424992904 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 75 (33.6 bits)