RPSBLAST alignment of GI: 254780424 and protein with PDBid: 3ivp

>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630} Length = 126

 Score = 51.2 bits (122), Expect = 8e-08
 Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 15  VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74
           +G  I+  R   G+++E++G  + I  + +   E          L  +  +L   +  FF
Sbjct: 13  LGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFF 72

Query: 75  DVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKIIE 121
             + +     S++   + + I       L       D +   +++ E
Sbjct: 73  LPASS--QVKSTKRRQLENKIDNFTDADLVIMESVADGIVKSKEVGE 117