RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780424|ref|YP_003064837.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] (144 letters) >d1y7ya1 a.35.1.3 (A:5-73) Restriction-modification controller protein C.AhdI {Aeromonas hydrophila [TaxId: 644]} Length = 69 Score = 59.4 bits (144), Expect = 1e-10 Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 13 INVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISF 72 + G+R+R R G+SQE L G+ V E+G V + ++ L+ Sbjct: 8 VKFGQRLRELRTAKGLSQETLAFLSGLDRSYVGGVERGQRNVSLVNILKLATALDIEPRE 67 Query: 73 FF 74 F Sbjct: 68 LF 69 >d2b5aa1 a.35.1.3 (A:1-77) Regulatory protein C.BclI {Bacillus caldolyticus [TaxId: 1394]} Length = 77 Score = 56.4 bits (136), Expect = 9e-10 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 9 NPVDIN--VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVL 66 N ++I G+ ++ R G+SQE+L + G+ + + E+G + + I L Sbjct: 3 NEIEIKRKFGRTLKKIRTQKGVSQEELADLAGLHRTYISEVERGDRNISLINIHKICAAL 62 Query: 67 ESPISFFFD 75 + P S FF Sbjct: 63 DIPASTFFR 71 >d1b0na2 a.35.1.3 (A:1-68) SinR repressor, DNA-binding domain {Bacillus subtilis [TaxId: 1423]} Length = 68 Score = 54.7 bits (132), Expect = 3e-09 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNR-VGASRLQHISEVLESPISFF 73 +G+RI+ R G S +L E G+ + E+ + L+ +S VL+ + Sbjct: 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTL 61 Query: 74 FD 75 D Sbjct: 62 LD 63 >d2r1jl1 a.35.1.2 (L:3-68) P22 C2 repressor, DNA-binding domain {Salmonella bacteriophage P22 [TaxId: 10754]} Length = 66 Score = 52.5 bits (126), Expect = 2e-08 Identities = 15/60 (25%), Positives = 30/60 (50%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 +G+RIR RR L + Q LG+ +G++ + ++E+ L +S+ L+ + Sbjct: 4 MGERIRARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGENLLALSKALQCSPDYLL 63 >d1y9qa1 a.35.1.8 (A:4-82) Probable transcriptional regulator VC1968, N-terminal domain {Vibrio cholerae [TaxId: 666]} Length = 79 Score = 51.9 bits (124), Expect = 2e-08 Identities = 15/70 (21%), Positives = 32/70 (45%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +++ R G+S + + G++ + + E+G + + L I+ LE+ S F Sbjct: 8 QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAF 67 Query: 74 FDVSPTVCSD 83 F P + S Sbjct: 68 FANDPQLLSS 77 >d1r69a_ a.35.1.2 (A:) 434 C1 repressor, DNA-binding domain {Bacteriophage 434 [TaxId: 10712]} Length = 63 Score = 49.9 bits (119), Expect = 8e-08 Identities = 13/62 (20%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 ++ R++ +R+ LG++Q +L + +G T Q +++ E G + L ++ L + + Sbjct: 1 SISSRVKSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTK-RPRFLPELASALGVSVDWL 59 Query: 74 FD 75 + Sbjct: 60 LN 61 >d1utxa_ a.35.1.3 (A:) Putative transcription regulator CylR2 {Enterococcus faecalis [TaxId: 1351]} Length = 66 Score = 49.5 bits (118), Expect = 1e-07 Identities = 14/64 (21%), Positives = 25/64 (39%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFF 74 + ++L R +SQ +L L ++ Q + EK I+ L +P+ F Sbjct: 2 IINNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIF 61 Query: 75 DVSP 78 P Sbjct: 62 QWQP 65 >d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]} Length = 65 Score = 44.8 bits (106), Expect = 3e-06 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 + +R++ RR+ L M+Q +L G+ Q +Q E G L I+ L + Sbjct: 3 TLSERLKKRRIALKMTQTELATKAGVKQQSIQLIEAG-VTKRPRFLFEIAMALNCDPVWL 61 Query: 74 F 74 Sbjct: 62 Q 62 >d1lmb3_ a.35.1.2 (3:) lambda C1 repressor, DNA-binding domain {Bacteriophage lambda [TaxId: 10710]} Length = 87 Score = 44.7 bits (105), Expect = 4e-06 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Query: 10 PVDINVGKRI----RLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEV 65 + +R+ ++ LG+SQE + + +G+ V G+N + A ++++ Sbjct: 4 QEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKI 63 Query: 66 LESPISFFFD 75 L+ + F Sbjct: 64 LKVSVEEFSP 73 >d2ppxa1 a.35.1.3 (A:30-91) Uncharacterized protein Atu1735 {Agrobacterium tumefaciens [TaxId: 358]} Length = 62 Score = 42.9 bits (101), Expect = 1e-05 Identities = 10/56 (17%), Positives = 23/56 (41%) Query: 18 RIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFF 73 RI++ R L ++QE+ I ++ +E+G + ++ + P Sbjct: 3 RIKIIRRALKLTQEEFSARYHIPLGTLRDWEQGRSEPDQPARAYLKIIAVDPEGTA 58 >d2auwa1 a.35.1.10 (A:88-154) Hypothetical protein NE0471 C-terminal domain {Nitrosomonas europaea [TaxId: 915]} Length = 67 Score = 42.4 bits (100), Expect = 2e-05 Identities = 7/39 (17%), Positives = 12/39 (30%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRV 54 + +S E LGI+ + V Y + Sbjct: 3 HEMFGDWMHRNNLSLTTAAEALGISRRMVSYYRTAHKII 41 >d1x57a1 a.35.1.12 (A:8-85) Endothelial differentiation-related factor 1, EDF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 78 Score = 41.6 bits (97), Expect = 3e-05 Identities = 16/69 (23%), Positives = 25/69 (36%) Query: 11 VDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPI 70 V + VGK I+ R G++Q+ L + Q + YE G L I + + Sbjct: 3 VTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKL 62 Query: 71 SFFFDVSPT 79 P Sbjct: 63 RGKDIGKPI 71 >d2ofya1 a.35.1.3 (A:3-84) Putative transcriptional regulator RHA1_ro04071 {Rhodococcus sp. RHA1 [TaxId: 101510]} Length = 82 Score = 36.2 bits (83), Expect = 0.001 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 3/75 (4%) Query: 9 NPVDINVGKRI--RLRRMILGMSQEKLGECLGITFQQVQKYEKG-VNRVGASRLQHISEV 65 ++ G+R+ LR MS + GI+ + ++K E G + + ++ V Sbjct: 5 TAEELERGQRLGELLRSARGDMSMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARV 64 Query: 66 LESPISFFFDVSPTV 80 L+ + V Sbjct: 65 LDLSLDDVAAVVTFG 79 >d2icta1 a.35.1.3 (A:8-94) Antitoxin HigA {Escherichia coli [TaxId: 562]} Length = 87 Score = 33.4 bits (76), Expect = 0.007 Identities = 9/60 (15%), Positives = 19/60 (31%) Query: 16 GKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQHISEVLESPISFFFD 75 G I+ L +S + + I + G + +S V+ S + + Sbjct: 3 GDIIQESLDELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLN 62 >d2o38a1 a.35.1.13 (A:28-116) Hypothetical protein RPA3824 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 89 Score = 33.3 bits (75), Expect = 0.009 Identities = 8/66 (12%), Positives = 16/66 (24%), Gaps = 1/66 (1%) Query: 14 NVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQH-ISEVLESPISF 72 + + +SQ LGI +V + + L+ + Sbjct: 11 RLAYALNAVIDRARLSQAAAAARLGINQPKVSALRNYKLEGFSVERLMTLLNALDQDVEI 70 Query: 73 FFDVSP 78 P Sbjct: 71 VIRKKP 76 >d2a6ca1 a.35.1.13 (A:1-69) HTH-motif protein NE1354 {Nitrosomonas europaea [TaxId: 915]} Length = 69 Score = 26.3 bits (57), Expect = 1.2 Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 1/61 (1%) Query: 15 VGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEK-GVNRVGASRLQHISEVLESPISFF 73 + ++ G++Q K E LG+T +V + ++ L + + + Sbjct: 7 LLIVLQEHLRNSGLTQFKAAELLGVTQPRVSDLMRGKIDLFSLESLIDMITSIGLKVEIN 66 Query: 74 F 74 Sbjct: 67 I 67 >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 234 Score = 23.4 bits (50), Expect = 7.0 Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 2/33 (6%) Query: 38 GI-TFQQVQKY-EKGVNRVGASRLQHISEVLES 68 GI + G + +G S + E +S Sbjct: 200 GIRSGIDAVLAVGAGADIIGTSSAVKVLESFKS 232 >d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 283 Score = 23.2 bits (50), Expect = 9.7 Identities = 5/14 (35%), Positives = 8/14 (57%) Query: 102 QLNRYFIQIDDVKV 115 LN+Y ++ KV Sbjct: 243 HLNKYLLRHKPTKV 256 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.137 0.378 Gapped Lambda K H 0.267 0.0625 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 532,635 Number of extensions: 23030 Number of successful extensions: 75 Number of sequences better than 10.0: 1 Number of HSP's gapped: 75 Number of HSP's successfully gapped: 22 Length of query: 144 Length of database: 2,407,596 Length adjustment: 77 Effective length of query: 67 Effective length of database: 1,350,386 Effective search space: 90475862 Effective search space used: 90475862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (22.9 bits)