BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780424|ref|YP_003064837.1| transcriptional regulator
protein [Candidatus Liberibacter asiaticus str. psy62]
         (144 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780424|ref|YP_003064837.1| transcriptional regulator protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 144

 Score =  291 bits (744), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60
           MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ
Sbjct: 1   MVGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKGVNRVGASRLQ 60

Query: 61  HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120
           HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII
Sbjct: 61  HISEVLESPISFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQIDDVKVRQKII 120

Query: 121 ELVRSIVSSEKKYRTIEEECMVEQ 144
           ELVRSIVSSEKKYRTIEEECMVEQ
Sbjct: 121 ELVRSIVSSEKKYRTIEEECMVEQ 144


>gi|254781218|ref|YP_003065631.1| hypothetical protein CLIBASIA_05625 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 205

 Score = 30.0 bits (66), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 2   VGNKKIPNPVDINVGKRIRLRRMILGMSQEKLGECLGITFQQVQKYEKG 50
           V NKK  +P  I  G R++  R   GMSQ + G+ LG+    +  YE+G
Sbjct: 103 VTNKKRLDPYAI--GARLKSIRKDKGMSQIEFGKLLGMPNSTLSNYEQG 149


>gi|254780539|ref|YP_003064952.1| ABC transporter, membrane spanning protein (iron) [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 273

 Score = 25.8 bits (55), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 50  GVNRVGASRLQHISEVLESPISFFFDVSP 78
           G   V +S L   S  L S IS+F D SP
Sbjct: 219 GTYLVSSSLLGATSSFLGSYISYFLDCSP 247


>gi|254780644|ref|YP_003065057.1| hypothetical protein CLIBASIA_02655 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 289

 Score = 25.4 bits (54), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 10/41 (24%), Positives = 17/41 (41%)

Query: 71  SFFFDVSPTVCSDISSEENNVMDFISTPDGLQLNRYFIQID 111
           SFF    P +   +S EE   + +   P+     ++F   D
Sbjct: 21  SFFMQAKPYILPALSKEEQKSLKYFFLPENTLCQKFFNAFD 61


>gi|254780911|ref|YP_003065324.1| formyltetrahydrofolate deformylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 288

 Score = 23.5 bits (49), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 45  QKYEKGVNRVGASRLQHISEVLESPI 70
           Q YE GV  +GA+    I E+   PI
Sbjct: 203 QAYEYGVKIIGATAHYAICELDAGPI 228


>gi|254780343|ref|YP_003064756.1| probable cation efflux protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 311

 Score = 23.1 bits (48), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 10/64 (15%)

Query: 65  VLESPISFFF--DVSPTVCSDISSEENNVMDFISTPDGLQ-------LNRY-FIQIDDVK 114
           VL+S I+ F   ++    C  ISS   N+MD    P+ L+       LN    I I D+K
Sbjct: 178 VLDSIIACFMACNILYQGCKVISSSIKNLMDAAVKPEHLEKIKNIIALNASGSIGIHDLK 237

Query: 115 VRQK 118
           +RQ 
Sbjct: 238 IRQA 241


>gi|254780281|ref|YP_003064694.1| cytochrome-c oxidase assembly factor protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 201

 Score = 22.7 bits (47), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 98  PDGLQLNRYFIQID 111
           P G  LN YFI +D
Sbjct: 88  PTGTLLNAYFITVD 101


>gi|255764463|ref|YP_003064765.2| delta-aminolevulinic acid dehydratase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 337

 Score = 21.9 bits (45), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 39  ITFQQVQKYEKGVNRVGAS-----RLQHISEVLESPISFFFDVSPTVCSDISSEENNVMD 93
           I+   V + + G + +  S     R+Q I + L+S       + P V    SS      D
Sbjct: 158 ISHAAVIQADAGADIIAPSEMMDGRVQEIRKKLDSHGHINVGIMPYVAKFNSSFYGPYRD 217

Query: 94  FISTPDGLQLNRYFIQIDDVKVRQKIIE 121
            IST D L+ ++    +D   V++ I E
Sbjct: 218 AISTRDLLKGDKKTYYLDPANVQEAIRE 245


>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 424

 Score = 21.6 bits (44), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 60 QH-ISEVLESPISFFFDVSPTVCSDISSEEN 89
          QH + +++  P  F  D    +C DI  EEN
Sbjct: 24 QHEVRKLIAGPTVFICDECVELCMDIIREEN 54


>537021.9.peg.911_1 
          Length = 47

 Score = 21.6 bits (44), Expect = 6.9,   Method: Composition-based stats.
 Identities = 7/12 (58%), Positives = 10/12 (83%)

Query: 43 QVQKYEKGVNRV 54
          QV++Y KG NR+
Sbjct: 6  QVERYAKGANRI 17


>gi|254780256|ref|YP_003064669.1| 50S ribosomal protein L22 [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 131

 Score = 21.6 bits (44), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 75 DVSPTVCSDISSEENN 90
          +V  T+CS +++ ENN
Sbjct: 60 EVRKTLCSAVANAENN 75


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.137    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,399
Number of Sequences: 1233
Number of extensions: 3439
Number of successful extensions: 19
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 16
length of query: 144
length of database: 328,796
effective HSP length: 66
effective length of query: 78
effective length of database: 247,418
effective search space: 19298604
effective search space used: 19298604
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 34 (17.7 bits)