HHsearch alignment for GI: 254780425 and conserved domain: cd07571
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=0 Score=542.21 Aligned_cols=265 Identities=25% Similarity=0.406 Sum_probs=235.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEECCC
Q ss_conf 321001244203555433335789987543101334668618983121011000112346677656410-7982420110
Q gi|254780425|r 243 PVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQPSILKKIASVLK-INQLLIVGSM 321 (518)
Q Consensus 243 ~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~~~~~~~l~~~~~-~~~~li~G~~ 321 (518)
T Consensus 1 ~~V~lVQ~Ni~~~~k~~~~~~~~~~~~~~~ls~~~~~~~~dlIVwPEta~p~~~~~~~~~~~~~~~~~~~~~~~li~G~~ 80 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDLQRDPDALARLARAARAVGAPLLTGAP 80 (270)
T ss_pred CEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 98999907998145128546999999999999877617999999489466765111889999999998755997999554
Q ss_pred CCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCEEECC
Q ss_conf 01234557512100003673212211125633422133100100001211100122221013587762000122001022
Q gi|254780425|r 322 RKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISPLLGLSEKLRLYPL 401 (518)
Q Consensus 322 ~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 401 (518)
T Consensus 81 ~~~~~--~~~~yNs~~~~~~~g~~~~~Y~K~hLVPFGEyiP~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 158 (270)
T cd07571 81 RREPG--GGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFDLPMGDFSPGTGPQPLLLGGGVRVGPL 158 (270)
T ss_pred EEECC--CCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCEEEEE
T ss_conf 56569--8867889999989998420784332206541366177777788752466586314999864652798258889
Q ss_pred CCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCEEEEECCCC
Q ss_conf 21666558888512--699779996277557676-289999999999997299199985597046998998087773899
Q gi|254780425|r 402 LFSDALFHQDINNL--ENVSAILNIIDDSGFMGS-GTDHSFRYAQIQAVEIGLPLIRATNNGVSAFLDERGQIISSVYAD 478 (518)
Q Consensus 402 ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s-~~~qH~~~a~~RAiE~~r~~vra~ntGiS~~id~~G~i~~~~~~~ 478 (518)
T Consensus 159 ICYE~~f~~~~r~~~~~ga~~lv~~tNdaWfg~s~~~~Qhl~~ar~RAiE~~r~~vr~~ntGiSa~Id~~G~i~~~~~~~ 238 (270)
T cd07571 159 ICYESIFPELVRDAVRQGADLLVNITNDAWFGDSAGPYQHLAMARLRAIETGRPLVRAANTGISAVIDPDGRIVARLPLF 238 (270)
T ss_pred EEEHHHCHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCEEEECCCC
T ss_conf 97534364999998644870999973664567884179999998988998299639866962689999998788874799
Q ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 8279999960676876878655689999999
Q gi|254780425|r 479 RGASIDMHFQPKVRDSFRSSIQMRVFWIIEF 509 (518)
Q Consensus 479 ~~~~l~~~v~~~~~~T~y~~~g~~~~~~~~~ 509 (518)
T Consensus 239 ~~~~l~~~v~~~~~~T~y~~~Gd~~~~~~~~ 269 (270)
T cd07571 239 EAGVLVAEVPLRTGLTPYVRWGDWPLLLLLL 269 (270)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 8279999950588987999987899999862