HHsearch alignment for GI: 254780425 and conserved domain: cd07577
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.93 E-value=7.2e-25 Score=180.53 Aligned_cols=209 Identities=18% Similarity=0.193 Sum_probs=148.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCH-H---H---------HHHHHHHHHHHH
Q ss_conf 21001244203555433335789987543101334668618983121011000-1---1---------234667765641
Q gi|254780425|r 244 VIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSI-V---D---------QPSILKKIASVL 310 (518)
Q Consensus 244 ~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~-~---~---------~~~~~~~l~~~~ 310 (518)
T Consensus 1 kIA~~Q~~~~~---gd~~~Nl~k~~~~i~~------a~adlvvfPEl~ltGY~~~~~~~~~~~~~~~~~~~~~~~l~~~a 71 (259)
T cd07577 1 KVGYVQFNPKF---GEVEKNLKKVESLIKG------VEADLIVLPELFNTGYAFTSKEEVASLAESIPDGPTTRFLQELA 71 (259)
T ss_pred CEEEEECCCCC---CCHHHHHHHHHHHHHH------CCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999898988---9999999999999997------59989997886102688899899998742536988999999999
Q ss_pred CCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCE
Q ss_conf 07982420110012345575121000036732122111256334221331001000012111001222210135877620
Q gi|254780425|r 311 KINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISPLL 390 (518)
Q Consensus 311 ~~~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~~~ 390 (518)
T Consensus 72 ~~~~i~iv~G~~e~---~~~~~yNs~~~i~~~g~-i~~y~K~hl~-~~E------------------~~~f~~G~~~~~v 128 (259)
T cd07577 72 RETGAYIVAGLPER---DGDKFYNSAVVVGPEGY-IGIYRKTHLF-YEE------------------KLFFEPGDTGFRV 128 (259)
T ss_pred HHCCCEEEEEEEEE---ECCEEEEEEEEECCCCE-EEEEECCCCC-CCC------------------CEEEECCCCCCEE
T ss_conf 97295899979997---79989999999819933-8999654799-752------------------1288279975049
Q ss_pred EECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC----------
Q ss_conf 0012200102221666558888512--6997799962775576762899999999999972991999855----------
Q gi|254780425|r 391 GLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATN---------- 458 (518)
Q Consensus 391 ~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~n---------- 458 (518)
T Consensus 129 ~~~~~~kiG~~IC~D~~fPe~~r~la~~Ga~ii~~ps~--~~~---~-~~~~~~~arA~en~~~vv~~n~vG~~~~~~~~ 202 (259)
T cd07577 129 FDIGDIRIGVMICFDWYFPEAARTLALKGADIIAHPAN--LVL---P-YCPKAMPIRALENRVFTITANRIGTEERGGET 202 (259)
T ss_pred EEECCEEEEEEEEHHCCCHHHHHHHHHCCCCEEEEEEC--CCC---H-HHHHHHHHHHHHCCCEEEEEEEEECCCCCCCC
T ss_conf 97799898645782117719999999879989999004--687---2-15999999999749869999755515789887
Q ss_pred ---CCCCEEECCCCEEEEECCCCCCEEEEEEECCC
Q ss_conf ---97046998998087773899827999996067
Q gi|254780425|r 459 ---NGVSAFLDERGQIISSVYADRGASIDMHFQPK 490 (518)
Q Consensus 459 ---tGiS~~id~~G~i~~~~~~~~~~~l~~~v~~~ 490 (518)
T Consensus 203 ~~f~G~S~i~~P~G~ila~~~~~~E~~l~adiDl~ 237 (259)
T cd07577 203 LRFIGKSQITSPKGEVLARAPEDGEEVLVAEIDPR 237 (259)
T ss_pred CEECCCEEEECCCCCEEEECCCCCCEEEEEEEEHH
T ss_conf 34758949998999898877999888999997069