Query         gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 518
No_of_seqs    165 out of 2706
Neff          8.6 
Searched_HMMs 33803
Date          Wed Jun  1 12:57:23 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780425.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2vhh_A CG3027-PA; hydrolase;  100.0 6.3E-40 1.8E-44  278.2  14.0  250  234-503    29-324 (324)
  2 >1uf5_A N-carbamyl-D-amino aci 100.0 2.1E-37 6.3E-42  261.8  16.4  252  241-503     2-289 (303)
  3 >2dyu_A Formamidase; AMIF, CEK 100.0 2.1E-37 6.2E-42  261.8  14.9  244  236-503     7-274 (283)
  4 >1f89_A 32.5 kDa protein YLR35 100.0 1.1E-33 3.2E-38  237.6  16.0  248  237-502     5-277 (291)
  5 >3hkx_A Amidase; alpha-beta-BE 100.0 1.8E-32 5.2E-37  229.7  16.7  237  236-503    14-272 (283)
  6 >2uxy_A Aliphatic amidase; nit 100.0 1.6E-32 4.7E-37  230.0  15.1  241  238-502     8-273 (275)
  7 >1ems_A Nitfhit, NIT-fragIle h 100.0   1E-31   3E-36  224.8  14.3  244  237-501     9-276 (285)
  8 >2w1v_A Nitrilase-2, nitrilase 100.0 1.2E-30 3.5E-35  217.8  14.9  236  241-501     2-260 (276)
  9 >3ilv_A Glutamine-dependent NA 100.0 6.7E-31   2E-35  219.4  11.8  242  241-493     4-269 (273)
 10 >3dla_A Glutamine-dependent NA 100.0 6.3E-30 1.9E-34  213.1  14.0  252  237-499     7-287 (322)
 11 >2e11_A Hydrolase; dimethylars 100.0 2.2E-30 6.4E-35  216.1  11.2  231  241-502     2-256 (266)
 12 >1j31_A Hypothetical protein P 100.0 1.2E-29 3.4E-34  211.3  12.6  220  243-498     2-246 (262)
 13 >1sgv_A TRNA pseudouridine syn  75.9     3.2 9.4E-05   19.5   3.6   38  441-478    11-48  (84)
 14 >1zbr_A AAQ65385, conserved hy  40.6      13 0.00037   15.6   1.4   31  402-432    44-77  (99)
 15 >3h7c_X Agmatine deiminase; st  35.5      22 0.00066   14.0   2.1   32  401-432    62-94  (114)
 16 >1vrg_A Propionyl-COA carboxyl  34.1      23 0.00069   13.8   4.5   12  281-292    87-98  (230)
 17 >1t57_A Conserved protein MTH1  30.9      26 0.00078   13.5   2.5   10  399-408   145-154 (206)
 18 >1xny_A Pccase, propionyl-COA   30.3      27  0.0008   13.4   5.2   11  281-291    87-97  (233)
 19 >1v5e_A Pyruvate oxidase; oxid  29.8      12 0.00036   15.7  -0.1   18  346-363   196-213 (222)
 20 >1xkn_A Putative peptidyl-argi  29.3      19 0.00056   14.4   0.8   15  418-432    71-85  (104)
 21 >1x0u_A Hypothetical methylmal  25.8      32 0.00095   12.9   5.2   25  265-292    74-98  (232)
 22 >1wsa_A Asparaginase, asparagi  22.2      38  0.0011   12.5   4.4   62  397-462    12-75  (125)
 23 >3ct8_A Protein BH2160, putati  21.9      38  0.0011   12.4   1.6   45  303-349    21-65  (67)
 24 >2f9y_B Acetyl-coenzyme A carb  21.0      40  0.0012   12.3   3.3   10  282-291    99-108 (249)
 25 >2c5u_A RNA ligase, T4 RNA lig  20.8      33 0.00098   12.8   0.7   30  338-367    60-96  (98)

No 1  
>>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A (A:36-359)
Probab=100.00  E-value=6.3e-40  Score=278.22  Aligned_cols=250  Identities=12%  Similarity=0.082  Sum_probs=196.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHH----HHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHH----------
Q ss_conf             45665555532100124420355543----3335789987543101334668618983121011000112----------
Q gi|254780425|r  234 SSLKFEKISPVIRIVQPGINPAIKED----REKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQ----------  299 (518)
Q Consensus       234 ~~~~~~~~~~~V~iVQpni~~~~k~~----~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~----------  299 (518)
                      ......+..++|++||+|+++..++.    .+..++++.++.+   ++.+.++|+|||||.+++.+..++          
T Consensus        29 ~~~~~~~~~i~va~vQ~~i~~~~~~~~~~~~~~n~~~~~~~i~---~A~~~gadlvV~PE~~~~g~~~~~~~~~~~~~~~  105 (324)
T 2vhh_A           29 EEQTRKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIK---AAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFA  105 (324)
T ss_dssp             CCSSSCCCEEEEEEEECCCCSCSSSCHHHHHHHHHHHHHHHHH---HHHHTTCSEEECCTTTTSCSCC---------CCC
T ss_pred             HHHCCCCCEEEEEEEECCCCCCCCCCHHHCHHHHHHHHHHHHH---HHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             2124788458999983367777768612369999999999999---9998699399846213668985201255588874


Q ss_pred             -----HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHC
Q ss_conf             -----346677656410798242011001234557512100003673212211125633422133100100001211100
Q gi|254780425|r  300 -----PSILKKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDF  374 (518)
Q Consensus       300 -----~~~~~~l~~~~~~~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~  374 (518)
                           ....+.+.+.++++...++.+......+++.++||++++++++|++..+|+|+||.+++|..|..          
T Consensus       106 ~~~~~~~~~~~l~~~a~~~~~~i~~g~~~~~~~~~~~~~n~~~~~~~~g~~~~~~~K~~l~~~~~~~~~~----------  175 (324)
T 2vhh_A          106 EEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNEST----------  175 (324)
T ss_dssp             BCTTTSHHHHHHHHHHHHTTCEEEEEEEEEETTTTTEEEEEEEEECTTSCEEEEEECSCCCC------------------
T ss_pred             HHCCCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCEE----------
T ss_conf             4427998999999999983948994113752377972553221125675022022133022322344202----------


Q ss_pred             CCCCCCCCCCCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf             12222101358776200012200102221666558888512--6997799962775576762899999999999972991
Q gi|254780425|r  375 YMFPLDYSSSDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLP  452 (518)
Q Consensus       375 ~~~~~~~~~g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~  452 (518)
                          ..+.+|...+++. .++.+++++||||..||+..|.+  +|+++++|++++++  ..+++||..+++.||+||+++
T Consensus       176 ----~~~~~g~~~~v~~-~~~~~~g~~ICyD~~~~e~~r~~~~~ga~lil~~~~~~~--~~~~~~~~~~~~~rA~e~~~~  248 (324)
T 2vhh_A          176 ----YYMEGNTGHPVFE-TEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSATIG--RLSEPLWSIEARNAAIANSYF  248 (324)
T ss_dssp             ------CCCCSCCCEEE-ETTEEEEECCGGGGGCHHHHHHHHHTTCSEEEEEECCBC--TTTHHHHHHHHHHHHHHHTSE
T ss_pred             ----EEEEECCCCCEEE-CCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCC--CCHHHHHHHHHHHHHHHCCCE
T ss_conf             ----3664025653056-488458610134554301012333035441232024555--526888888999999982983


Q ss_pred             EEEEECCCC-------------------------CEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             999855970-------------------------469989980877738998279999960676876878655689
Q gi|254780425|r  453 LIRATNNGV-------------------------SAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQMRV  503 (518)
Q Consensus       453 ~vra~ntGi-------------------------S~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~~~  503 (518)
                      ++|++|+|.                         |+++||+|+++++.+.++++++.+++.++...|.|.+||+|+
T Consensus       249 ~v~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~S~i~~p~G~vl~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~  324 (324)
T 2vhh_A          249 TVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRM  324 (324)
T ss_dssp             EEEEECEECCCCC-----------------EECCCCCBCTTSCBCCCCCSSSCEEEEEEEETTHHHHHHHHHCTTT
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCEEEEEEEEHHHHHHHHHHCCCCC
T ss_conf             9999522226776522333333356778713340599839987876048999889999974799999997688621


No 2  
>>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} (A:)
Probab=100.00  E-value=2.1e-37  Score=261.78  Aligned_cols=252  Identities=13%  Similarity=0.120  Sum_probs=202.8

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHH-----------------HHHHH
Q ss_conf             5532100124420355543333578998754310133466861898312101100011-----------------23466
Q gi|254780425|r  241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVD-----------------QPSIL  303 (518)
Q Consensus       241 ~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~-----------------~~~~~  303 (518)
                      .+++|+++|+|+++..++ .++..++..++.+   ++.+.++|+||+||.+++-+..+                 .....
T Consensus         2 ~~~kIa~~Q~~~~~~~~d-~~~n~~~i~~~~~---~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~   77 (303)
T 1uf5_A            2 RQMILAVGQQGPIARAET-REQVVVRLLDMLT---KAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVV   77 (303)
T ss_dssp             CEEEEEEEEBCCCCTTCC-HHHHHHHHHHHHH---HHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTT
T ss_pred             CEEEEEEECCCCCCCCCC-HHHHHHHHHHHHH---HHHHCCCCEEECCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCHHH
T ss_conf             479999992678689858-9999999999999---999888939990888634587200003666776666552488899


Q ss_pred             HHHHHHHCC-CCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCC
Q ss_conf             776564107-9824201100123455751210000367321221112563342213310010000121110012222101
Q gi|254780425|r  304 KKIASVLKI-NQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYS  382 (518)
Q Consensus       304 ~~l~~~~~~-~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~  382 (518)
                      +.+.+.+++ +..++.|....+....+.++||++++++++|++..+|.|+++.+++|+.|.+.....-       ...+.
T Consensus        78 ~~~~~~a~~~~~~iv~G~~~~~~~~~~~~~yN~~~~~~~~g~~~~~~kk~~~~~~~~~~~~~~~~~~~-------~~~~~  150 (303)
T 1uf5_A           78 RPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLE-------KRYFE  150 (303)
T ss_dssp             HHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCH-------HHHCC
T ss_pred             HHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCEEC-------CEEEE
T ss_conf             99999999749469887544223148971588999605653122103652479986554343110102-------11573


Q ss_pred             CCCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECC------CCCCCCC-HHHHHHHHHHHHHHHCCCEE
Q ss_conf             358776200012200102221666558888512--69977999627------7557676-28999999999999729919
Q gi|254780425|r  383 SSDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIID------DSGFMGS-GTDHSFRYAQIQAVEIGLPL  453 (518)
Q Consensus       383 ~g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tN------d~Wf~~s-~~~qH~~~a~~RAiE~~r~~  453 (518)
                      +++........++.|+|.+||||..||+..|.+  +|+++++++++      |+|+..+ ++.||..+++.||+||++++
T Consensus       151 ~~~~~~~v~~~~~~kig~~IC~D~~~p~~~~~~~~~gadlii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~~  230 (303)
T 1uf5_A          151 PGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWS  230 (303)
T ss_dssp             CCSSCSCEEEETTEEEEECCGGGGGCHHHHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHHHHHHHHHHHHHTCEE
T ss_pred             ECCCCCEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             06876505884583687602213101576666762898899970455654544421001100124666666655245303


Q ss_pred             EEEECC---------CCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             998559---------70469989980877738998279999960676876878655689
Q gi|254780425|r  454 IRATNN---------GVSAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQMRV  503 (518)
Q Consensus       454 vra~nt---------GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~~~  503 (518)
                      ++++++         |.|++|||+|+++++++.++++++.+++++....|.|+++++|.
T Consensus       231 v~an~~g~~~~~~~~G~S~vi~p~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  289 (303)
T 1uf5_A          231 AAAGKAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFK  289 (303)
T ss_dssp             EEEEBCEEETTEEECCCCEEECTTSCEEEECCSSSSEEEEEEEEGGGGHHHHTTTTCHH
T ss_pred             EECCCCCCCCCCEECCCCEEEECCCCEEEECCCCCCEEEEEEECHHHHHHHHHHCCCHH
T ss_conf             31364121336207367489959999998768998879999985899999997588513


No 3  
>>2dyu_A Formamidase; AMIF, CEK, catalytic triad, aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori 26695} PDB: 2dyv_A 2e2l_A 2e2k_A (A:1-283)
Probab=100.00  E-value=2.1e-37  Score=261.80  Aligned_cols=244  Identities=13%  Similarity=0.037  Sum_probs=195.4

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHH-----------HHHH
Q ss_conf             66555553210012442035554-33335789987543101334668618983121011000112-----------3466
Q gi|254780425|r  236 LKFEKISPVIRIVQPGINPAIKE-DREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQ-----------PSIL  303 (518)
Q Consensus       236 ~~~~~~~~~V~iVQpni~~~~k~-~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~-----------~~~~  303 (518)
                      ......+++|+++|+|+++..++ +.++..+++.++.+.. ++.+.++|||||||.+++.+..+.           ....
T Consensus         7 ~~~~~~~~kVa~vQ~~~~~~~~~~d~~~n~~~~~~~i~~~-~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~   85 (283)
T 2dyu_A            7 MGKPIEGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHAT-KAGYPGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKET   85 (283)
T ss_dssp             ------CEEEEEECCBCCCCCSHHHHHHHHHHHHHHHHHH-HHHCTTEEEEECCTTTTTCCCTTTTTSGGGCBCSSSHHH
T ss_pred             CCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH-HHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHH
T ss_conf             8887754389999678777888889999999999999998-615699979997887644688336666888775787799


Q ss_pred             HHHHHHHCCCCE-EEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCC
Q ss_conf             776564107982-4201100123455751210000367321221112563342213310010000121110012222101
Q gi|254780425|r  304 KKIASVLKINQL-LIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYS  382 (518)
Q Consensus       304 ~~l~~~~~~~~~-li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~  382 (518)
                      +.+.+.+++++. +++|....+ ..++.++||++++++|+|++..+|.|+||+++.|+.++.                  
T Consensus        86 ~~l~~~a~~~~~~ii~g~~~~~-~~~~~~~yNs~~~~~~~g~~~~~~~k~~~~~~~~~~~~~------------------  146 (283)
T 2dyu_A           86 ELYAKACKEAKVYGVFSIMERN-PDSNKNPYNTAIIIDPQGEIILKYRKLFPWNPIEPWYPG------------------  146 (283)
T ss_dssp             HHHHHHHHHHTCEEEEEEEECC-SSTTSCCEEEEEEECTTSCEEEEEECSSCCTTTCCCCCC------------------
T ss_pred             HHHHHHHHHCCCEEEEEEEEEC-CCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCC------------------
T ss_conf             9999999745818998777850-456980687765303465321022340257631011012------------------


Q ss_pred             CCCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             358776200012200102221666558888512--699779996277557676289999999999997299199985597
Q gi|254780425|r  383 SSDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNG  460 (518)
Q Consensus       383 ~g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~ntG  460 (518)
                       +.........++.+++.+||||..||+..|.+  +|+++++|++++..   ..+.||..+++.||+||+.++++|+++|
T Consensus       147 -~~~~~~~~~~~~~~ig~~IC~d~~~pe~~r~~~~~g~~ll~~p~~~~~---~~~~~~~~~~~~~A~e~~~~vv~an~~G  222 (283)
T 2dyu_A          147 -DLGMPVCEGPGGSKLAVCICHDGMIPELAREAAYKGCNVYIRISGYST---QVNDQWILTNRSNAWHNLMYTVSVNLAG  222 (283)
T ss_dssp             -CSCCCCEECGGGCEEEEEEGGGGGCHHHHHHHHHTTCSEEEEEESSCT---TSHHHHHHHHHHHHHHHTCEEEEEECSB
T ss_pred             -CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCC---CCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             -466420002588579999703532025678887630333101334576---5302345588999997698499983541


Q ss_pred             ---------CCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             ---------0469989980877738998279999960676876878655689
Q gi|254780425|r  461 ---------VSAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQMRV  503 (518)
Q Consensus       461 ---------iS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~~~  503 (518)
                               .|++|||+|+++++++.++++++..++.+...+|.|+++|+|.
T Consensus       223 ~~~~~~~~G~S~ii~p~G~~l~~~~~~~~~~l~~~idl~~~~~~~~~~~~~~  274 (283)
T 2dyu_A          223 YDNVFYYFGEGQICNFDGTTLVQGHRNPWEIVTGEIYPKMADNARLSWGLEN  274 (283)
T ss_dssp             SSSSCCCCCEEEEECTTSCEEEECCCCTTCEEEEEECHHHHHHHHHHCSTTC
T ss_pred             CCCCEEEEEEEEEECCCCCEEEECCCCCCEEEEEEECHHHHHHHHHCCCHHH
T ss_conf             3798589721489939968676328998424899975999999997231331


No 4  
>>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} (A:)
Probab=100.00  E-value=1.1e-33  Score=237.56  Aligned_cols=248  Identities=15%  Similarity=0.127  Sum_probs=185.8

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHH-------------HHHHHH
Q ss_conf             6555553210012442035554333357899875431013346686189831210110001-------------123466
Q gi|254780425|r  237 KFEKISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIV-------------DQPSIL  303 (518)
Q Consensus       237 ~~~~~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~-------------~~~~~~  303 (518)
                      +....+++|+++|+|++...+.   +..++..++.+.+. ....++|||||||.+++-+..             ......
T Consensus         5 ~~~~~~ikIalvQ~~~~~~~~~---~n~~~~~~~i~~a~-~~~~gadlivfPE~~l~Gy~~~~~~~~~~~~~~~~~~~~~   80 (291)
T 1f89_A            5 KILSQKIKVALVQLSGSSPDKM---ANLQRAATFIERAM-KEQPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSV   80 (291)
T ss_dssp             SSBSSCEEEEEEECCCCCSCHH---HHHHHHHHHHHHHH-HHCTTEEEEECCTTTTSCSCHHHHHHHTTBCCSSSCCHHH
T ss_pred             HHHHCCCEEEEEECCCCCCCHH---HHHHHHHHHHHHHH-HCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf             0100572899996778878999---99999999999998-5089985998987545789878898878886422897999


Q ss_pred             HHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf             77656410798242011001234557512100003673212211125633422133100100001211100122221013
Q gi|254780425|r  304 KKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSS  383 (518)
Q Consensus       304 ~~l~~~~~~~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~  383 (518)
                      +.+.+.+++.+..++++......+++.++|||+++++++|++..+|+|.+|.++++|.+......          ..+.+
T Consensus        81 ~~~~~~a~~~~~~iv~g~~~~~~~~~~~~yNs~~~i~~~g~i~~~~~k~~l~~~~~~~~~~~~~~----------~~~~~  150 (291)
T 1f89_A           81 QFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHES----------ETLSP  150 (291)
T ss_dssp             HHHHHHHHHSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHH----------HSCCC
T ss_pred             HHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCE----------EECCC
T ss_conf             99999999739779840267752789979999999823774255430343321135666663310----------22058


Q ss_pred             CCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             58776200012200102221666558888512--6997799962775576762899999999999972991999855970
Q gi|254780425|r  384 SDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGV  461 (518)
Q Consensus       384 g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~ntGi  461 (518)
                      |.....+. .++.++|..||||..||+..|.+  +|+++++++++.  ....+++||..+++.||+||++++++|+++|.
T Consensus       151 g~~~~~~~-~~~~~ig~~IC~d~~~pe~~r~l~~~ga~ii~~p~~~--~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~G~  227 (291)
T 1f89_A          151 GEKSTTID-TKYGKFGVGICYDMRFPELAMLSARKGAFAMIYPSAF--NTVTGPLHWHLLARSRAVDNQVYVMLCSPARN  227 (291)
T ss_dssp             CCCCEEEE-ETTEEEEECCGGGGGCHHHHHHHHHTTEEEEEEECCC--BTTHHHHHHHHHHHHHHHHHTSEEEEECCCCC
T ss_pred             CCCCCEEC-CCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCC--CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf             86432003-4873513343334248699999997899599987888--78776123010466688855707999844026


Q ss_pred             ----------CEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf             ----------46998998087773899827999996067687687865568
Q gi|254780425|r  462 ----------SAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQMR  502 (518)
Q Consensus       462 ----------S~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~~  502 (518)
                                |++|||+|+++++++.++ +++.+++.+...+|++.+++.+
T Consensus       228 ~~~~~~~~G~S~vi~p~G~~l~~~~~~e-~~l~a~vd~~~~~~~r~~~~~~  277 (291)
T 1f89_A          228 LQSSYHAYGHSIVVDPRGKIVAEAGEGE-EIIYAELDPEVIESFRQAVPLT  277 (291)
T ss_dssp             TTSSSCBCCCCEEECTTSCEEEECCSSS-EEEEEEECHHHHHHHHHHSCCC
T ss_pred             CCCCCEECCCEEEEECCCCEEEECCCCC-EEEEEEECHHHHHHHHHHCCCH
T ss_conf             7788611564399939997898889998-3999998689999999968714


No 5  
>>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich, hydrolase; 1.66A {Nesterenkonia SP} (A:)
Probab=100.00  E-value=1.8e-32  Score=229.71  Aligned_cols=237  Identities=17%  Similarity=0.100  Sum_probs=180.9

Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHH----------HHHHH
Q ss_conf             66555553210012442035554333357899875431013346686189831210110001123----------46677
Q gi|254780425|r  236 LKFEKISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQP----------SILKK  305 (518)
Q Consensus       236 ~~~~~~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~~----------~~~~~  305 (518)
                      ......+++|+++|+|+++.++.   +..++..++.+   ++.+.++|+|||||.+++.+..++.          ...+.
T Consensus        14 ~~~~~~~~kva~~Q~~~~~~~~~---~n~~~i~~~~~---~a~~~~adlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~   87 (283)
T 3hkx_A           14 LVIRGSHMRIALMQHTARPLDPQ---HNLDLIDDAAA---RASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSR   87 (283)
T ss_dssp             SCCTTEEEEEEEEEBCCCTTCHH---HHHHHHHHHHH---HHHHTTCSEEECCTTGGGCSCHHHHHHHCCHHHHHHHHHH
T ss_pred             CEEECCCCEEEEEECCCCCCCHH---HHHHHHHHHHH---HHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHH
T ss_conf             45507987899998889889999---99999999999---9998879799958775568984787644202106899999


Q ss_pred             HHHHHCCCCE-EEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCC
Q ss_conf             6564107982-420110012345575121000036732122111256334221331001000012111001222210135
Q gi|254780425|r  306 IASVLKINQL-LIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSS  384 (518)
Q Consensus       306 l~~~~~~~~~-li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g  384 (518)
                      +.+.+++++. ++.|.....   ++.++||+.++++++|+....|+|.++.++.|...                 .+.+|
T Consensus        88 l~~~a~~~~~~i~~g~~~~~---~~~~~~n~~~v~~~~g~~~~~~~k~~~~~~~~~~~-----------------~~~~g  147 (283)
T 3hkx_A           88 LRGIARDRGIALVWSLPGPE---GPEQRGITAELADEHGEVLASYQKVQLYGPEEKAA-----------------FVPGE  147 (283)
T ss_dssp             HHHHHHHTTSEEEECCBCSS---CTTTCCBEEEEECTTSCEEEEEECSSCCHHHHHHH-----------------SCCCC
T ss_pred             HHHHHHHCCCEEEEEEEEEE---CCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCE-----------------ECCCC
T ss_conf             99999982988999778983---78624799999956995898981663412354302-----------------31478


Q ss_pred             CCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE-----
Q ss_conf             8776200012200102221666558888512--699779996277557676289999999999997299199985-----
Q gi|254780425|r  385 DISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRAT-----  457 (518)
Q Consensus       385 ~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~-----  457 (518)
                      ....++. .++.+++.+||||..||+..|.+  +|++++++++++.+.   .+++|..+++.||+||++++++|+     
T Consensus       148 ~~~~~~~-~~~~~ig~~IC~D~~~pe~~~~~~~~g~dil~~~s~~~~~---~~~~~~~~~~~rA~e~~~~vv~~n~~G~~  223 (283)
T 3hkx_A          148 QPPPVLS-WGGRQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGD---ETSVPGILLPARAVENGITLAYANHCGPE  223 (283)
T ss_dssp             SCCCEEE-ETTEEEEECCGGGGGSHHHHHHHHHTTCSEEEEECCCBSC---CTHHHHTHHHHHHHHHTCEEEEECBEEEE
T ss_pred             CCCCCCE-EECCEECCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCC---CCCCCHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf             5542111-1010113543444347599999973778789991578898---64211016788998646842997510058


Q ss_pred             ----CCCCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             ----5970469989980877738998279999960676876878655689
Q gi|254780425|r  458 ----NNGVSAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQMRV  503 (518)
Q Consensus       458 ----ntGiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~~~  503 (518)
                          +.|.|++|||+|+++++.+.+ ++++.+++++...+|.|.+++.|.
T Consensus       224 ~~~~~~G~S~vi~p~G~~~~~~~~~-e~~l~~~id~~~~~~~r~~~~~~~  272 (283)
T 3hkx_A          224 GGLVFDGGSVVVGPAGQPLGELGVE-PGLLVVDLPDQSQDAGSDSADYLQ  272 (283)
T ss_dssp             TTEEEECCCEEECTTSCEEEECCSS-CEEEEEEEEC----------CHHH
T ss_pred             CCEEEECCEEEECCCCCEEEECCCC-CEEEEEEECHHHHHHHHHHCCHHH
T ss_conf             9907714069992999899985899-859999976999999998498567


No 6  
>>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A (A:1-275)
Probab=100.00  E-value=1.6e-32  Score=229.98  Aligned_cols=241  Identities=10%  Similarity=0.017  Sum_probs=189.8

Q ss_pred             CCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHH-----------HHHHHH
Q ss_conf             555553210012442035554-33335789987543101334668618983121011000112-----------346677
Q gi|254780425|r  238 FEKISPVIRIVQPGINPAIKE-DREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQ-----------PSILKK  305 (518)
Q Consensus       238 ~~~~~~~V~iVQpni~~~~k~-~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~-----------~~~~~~  305 (518)
                      ..+.+++|+++|.|+++..|+ +.++..++..++.+... +.+.++|+||+||.+++.+..+.           ....+.
T Consensus         8 ~~~~~~~va~vQ~~~~~~~~~~d~~~n~~~~~~~i~~~~-A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~   86 (275)
T 2uxy_A            8 SSNDTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMK-QGLPGMDLVVFPEYSLQGIMYDPAEMMETAVAIPGEETEI   86 (275)
T ss_dssp             CCTTEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHH-HHCTTEEEEECCTTTTTBCCCSHHHHHHHCBCSSSHHHHH
T ss_pred             CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf             899816999996677775788999999999999999998-2699997997589876678877678777666368679999


Q ss_pred             HHHHHCC-CCEEEECCCCCCC-CCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf             6564107-9824201100123-4557512100003673212211125633422133100100001211100122221013
Q gi|254780425|r  306 IASVLKI-NQLLIVGSMRKEL-VDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSS  383 (518)
Q Consensus       306 l~~~~~~-~~~li~G~~~~~~-~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~  383 (518)
                      +.+.+++ +..+++|...... ..++.++||++++++++|++..+|.|.+....                    ...+..
T Consensus        87 l~~~a~~~~~~ii~g~~~~~~~~~~~~~~yN~~~~~~~~g~i~~~~k~~~~~~~--------------------~~~~~~  146 (275)
T 2uxy_A           87 FSRACRKANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPWCP--------------------IEGWYP  146 (275)
T ss_dssp             HHHHHHHHTCEEEEEEEEECCTTTTSSCCEEEEEEECTTSCEEEEEECSSCCTT--------------------TCCCBC
T ss_pred             HHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCC--------------------CCCCCC
T ss_conf             999998636446512245322036998578899997788642322102202465--------------------432111


Q ss_pred             CCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             58776200012200102221666558888512--6997799962775576762899999999999972991999855970
Q gi|254780425|r  384 SDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGV  461 (518)
Q Consensus       384 g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~ntGi  461 (518)
                      |+........++.+++.+||||..||+..|.+  +++++++++||+.|   .++.||..+++.||+||+.++++|+++|.
T Consensus       147 ~~~~~~~~~~~~~~ig~~IC~d~~~pe~~~~~~~~ga~ii~~~s~~~~---~~~~~~~~~~~~~A~en~~~vv~~n~~G~  223 (275)
T 2uxy_A          147 GGQTYVSEGPKGMKISLIIXDDGNYPEIWRDCAMKGAELIVRCQGYMY---PAKDQQVMMAKAMAWANNCYVAVANAAGF  223 (275)
T ss_dssp             CCCCCCEECGGGCEEEEEEGGGGGSHHHHHHHHHTTCSEEEEEECCBT---TCHHHHHHHHHHHHHHHTCEEEEEECEEE
T ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCC---CCCCCCHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             124541230357420112122433221000023444210010343465---64222105799999982987999944335


Q ss_pred             ---------CEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf             ---------46998998087773899827999996067687687865568
Q gi|254780425|r  462 ---------SAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQMR  502 (518)
Q Consensus       462 ---------S~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~~  502 (518)
                               |++|||+|+++++++.++++++.+++++...+|.|.+||-+
T Consensus       224 ~~~~~~~g~s~ii~p~G~~~~~~~~~~~~~l~~~id~~~~~~~r~~~~~~  273 (275)
T 2uxy_A          224 DGVYSYFGHSAIIGFDGRTLGECGEEEMGIQYAQLSLSQIRDARANDQSQ  273 (275)
T ss_dssp             CSSCEEECCCEEECTTSCEEEECCSCTTCEEEEEEEHHHHHHHHHHCCTT
T ss_pred             CCCCEECCCCCEECCCCCEEEECCCCCCEEEEEEECHHHHHHHHHHCCCH
T ss_conf             89944523044048998589976899878999996089999999848706


No 7  
>>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} (A:1-285)
Probab=99.98  E-value=1e-31  Score=224.80  Aligned_cols=244  Identities=14%  Similarity=0.098  Sum_probs=186.9

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHH----------HHHHHHHHH
Q ss_conf             6555553210012442035554333357899875431013346686189831210110001----------123466776
Q gi|254780425|r  237 KFEKISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIV----------DQPSILKKI  306 (518)
Q Consensus       237 ~~~~~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~----------~~~~~~~~l  306 (518)
                      ......++|+++|++.+.+.+.+.+.    ..++.+   ++.+.++||||+||.+++.+..          .+....+.+
T Consensus         9 ~~~~~~~kvA~~Q~~~~~~~~~n~~~----~~~~i~---~a~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~   81 (285)
T 1ems_A            9 TMATGRHFIAVCQMTSDNDLEKNFQA----AKNMIE---RAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKY   81 (285)
T ss_dssp             -CCCSEEEEEEECBCCCSCHHHHHHH----HHHHHH---HHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCEEEEEEECCCCCCHHHHHHH----HHHHHH---HHHHCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHH
T ss_conf             03656838999979898799999999----999999---99978396999688840228896676543001782999999


Q ss_pred             HHHHCCC-CEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCC
Q ss_conf             5641079-824201100123455751210000367321221112563342213310010000121110012222101358
Q gi|254780425|r  307 ASVLKIN-QLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSD  385 (518)
Q Consensus       307 ~~~~~~~-~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~  385 (518)
                      .+.++++ ..++.|....+..++..++|||+++++++|++..+|+|+||++++|+.|.+..         .....+.+|+
T Consensus        82 ~~~a~~~~~~i~~g~~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~~~~~~---------~~~~~~~~g~  152 (285)
T 1ems_A           82 RELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLM---------ESEFSKAGTE  152 (285)
T ss_dssp             HHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEE---------GGGTCCCCCS
T ss_pred             HHHHHHHCCEEEECCEEEECCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCC---------CCCCCCCCCC
T ss_conf             9999973999998435766368886079999999458858876502235775789975302---------1013148987


Q ss_pred             CCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHHHCCCEEEEEECC---
Q ss_conf             776200012200102221666558888512--699779996277557676-28999999999999729919998559---
Q gi|254780425|r  386 ISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGS-GTDHSFRYAQIQAVEIGLPLIRATNN---  459 (518)
Q Consensus       386 ~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s-~~~qH~~~a~~RAiE~~r~~vra~nt---  459 (518)
                      ...++.. ++.+++.+||||..||+..|.+  +++++++++|.   +..+ +.+|+..+.+.||+||+.+++++++.   
T Consensus       153 ~~~~~~~-~~~~ig~~IC~D~~~pe~~~~~~~~gadii~~psa---~~~~~~~~~~~~~~~~~a~en~~~~v~~n~~G~~  228 (285)
T 1ems_A          153 MIPPVDT-PIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSA---FTLNTGLAHWETLLRARAIENQCYVVAAAQTGAH  228 (285)
T ss_dssp             CCCCEEE-TTEEECCCCGGGGGCHHHHHHHHHTTCSEEECCBC---CCHHHHHHHHHHHHHHHHHHHTCEEEECBBEEEE
T ss_pred             CCCEEEE-CCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCC---CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             5404981-89459988433656849999998779839999078---8887459999999999999869779999872055


Q ss_pred             -------CCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf             -------704699899808777389982799999606768768786556
Q gi|254780425|r  460 -------GVSAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQM  501 (518)
Q Consensus       460 -------GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~  501 (518)
                             |.|.++||+|+++.+++.++ +++.+++.+...++.+.+++-
T Consensus       229 ~~~~~~~G~S~i~~p~G~~l~~~~~~e-~il~~~id~~~~~~~r~~~~~  276 (285)
T 1ems_A          229 NPKRQSYGHSMVVDPWGAVVAQCSERV-DMCFAEIDLSYVDTLREMQPV  276 (285)
T ss_dssp             ETTEEEECCCEEECTTSCEEEECCSSS-CEEEEEEEHHHHHHHHHHSCG
T ss_pred             CCCCEEEEEEEEECCCCCEEEECCCCC-EEEEEEECHHHHHHHHHHCCC
T ss_conf             997567334799929986888659998-499999728999999974984


No 8  
>>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} (A:)
Probab=99.97  E-value=1.2e-30  Score=217.83  Aligned_cols=236  Identities=16%  Similarity=0.124  Sum_probs=179.5

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHH---------HHHHHHHHHHC
Q ss_conf             553210012442035554333357899875431013346686189831210110001123---------46677656410
Q gi|254780425|r  241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQP---------SILKKIASVLK  311 (518)
Q Consensus       241 ~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~~---------~~~~~l~~~~~  311 (518)
                      .+++|+++|++++++.+.+    .++..++.+   ++.+.++|||||||.+++.+.....         ...+.+.+.++
T Consensus         2 ~~~kia~~Q~~~~~~~~~n----~~~i~~~i~---~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~a~   74 (276)
T 2w1v_A            2 STFRLALIQLQVSSIKSDN----LTRACSLVR---EAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAK   74 (276)
T ss_dssp             CEEEEEEEECCCCSCHHHH----HHHHHHHHH---HHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCCCHHHH----HHHHHHHHH---HHHHCCCEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             9769999978589999999----999999999---999884979997878656898789998877678899999999988


Q ss_pred             CC-CEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCE
Q ss_conf             79-82420110012345575121000036732122111256334221331001000012111001222210135877620
Q gi|254780425|r  312 IN-QLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISPLL  390 (518)
Q Consensus       312 ~~-~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~~~  390 (518)
                      ++ ..+++|....+   +++++||++.+++++|++..+|.|.|+.+++++.+.....          ...+.++...+++
T Consensus        75 ~~~~~~~~g~~~~~---~~~~~~Ns~~~i~~~G~i~~~~~k~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~  141 (276)
T 2w1v_A           75 ESSIYLIGGSIPEE---DAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQE----------SKTLSPGDSFSTF  141 (276)
T ss_dssp             HHTSEEECCCEEEE---ETTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTEEEEG----------GGTCCCCCCCCEE
T ss_pred             HCCCEEEEEEEEEC---CCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCC----------CCCCCCCCCCCCC
T ss_conf             66908998532020---2586513689864887510155202346654543211223----------3456799853322


Q ss_pred             EECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHHHCCCEEEEEECC--------
Q ss_conf             0012200102221666558888512--699779996277557676-28999999999999729919998559--------
Q gi|254780425|r  391 GLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGS-GTDHSFRYAQIQAVEIGLPLIRATNN--------  459 (518)
Q Consensus       391 ~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s-~~~qH~~~a~~RAiE~~r~~vra~nt--------  459 (518)
                      . .++.+++.+||||..||+..|..  +++++++|+++   ++.+ +..||..+++.||+||+.++++|+|+        
T Consensus       142 ~-~~g~~ig~lIC~d~~~p~~~~~~~~~gadli~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~vv~an~~g~~~~~~~  217 (276)
T 2w1v_A          142 D-TPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGA---FNLTTGPAHWELLQRARAVDNQVYVATASPARDDKASYV  217 (276)
T ss_dssp             E-CSSCEEEECCGGGGGCHHHHHHHHHTTEEEEEEECC---CCTTHHHHHHHHHHHHHHHHHTCEEEEECCCCCTTSSSC
T ss_pred             C-CCCCEEEEEEEEECCCHHHHHHHHHCCCCEEEECCC---CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCE
T ss_conf             3-576325314542024859999999869988974576---787753778888999999973965999725547888857


Q ss_pred             --CCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf             --704699899808777389982799999606768768786556
Q gi|254780425|r  460 --GVSAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQM  501 (518)
Q Consensus       460 --GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~  501 (518)
                        |.|+++||+|+++.+.+.++ +++++++.+....+.+.+++.
T Consensus       218 ~~G~S~i~~p~G~~l~~~~~~e-~i~~~~idl~~~~~~r~~~~~  260 (276)
T 2w1v_A          218 AWGHSTVVDPWGQVLTKAGTEE-TILYSDIDLKKLAEIRQQIPI  260 (276)
T ss_dssp             CCCCCEEECTTSCEEEECCSSS-EEEEEEEEHHHHHHHHHHSCG
T ss_pred             ECCCEEEECCCCCEEEECCCCC-EEEEEEECHHHHHHHHHHCCC
T ss_conf             6666199889998886349987-599999858999999986870


No 9  
>>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} (A:1-273)
Probab=99.97  E-value=6.7e-31  Score=219.40  Aligned_cols=242  Identities=10%  Similarity=-0.017  Sum_probs=176.8

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHH--------HHHHHHHHHHHHCC
Q ss_conf             5532100124420355543333578998754310133466861898312101100011--------23466776564107
Q gi|254780425|r  241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVD--------QPSILKKIASVLKI  312 (518)
Q Consensus       241 ~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~--------~~~~~~~l~~~~~~  312 (518)
                      ++++|+++|+|+++.++.   ...++..++.+   ++.+.++|||||||.+++.+...        .....+.+.+.+++
T Consensus         4 ~~~rva~~Q~~~~~~d~~---~n~~~i~~~i~---~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~l~~~a~~   77 (273)
T 3ilv_A            4 STIRIGGAAVNQTPIDWE---NNVKNILDAIE---EAKNANVEILCLPELCITGYGCEDLFLTDWVAETAIEYCFEIAAS   77 (273)
T ss_dssp             CEEEEEEEEECCCTTCHH---HHHHHHHHHHH---HHHHTTCSEEECCTTTTTCSCCGGGGGSHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEEECCCCCCCHH---HHHHHHHHHHH---HHHHCCCCEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             760899996789867699---99999999999---999889969997888312699778730888999999999999986


Q ss_pred             CC-EEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCC-CCCCCCCCCCE
Q ss_conf             98-24201100123455751210000367321221112563342213310010000121110012222-10135877620
Q gi|254780425|r  313 NQ-LLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPL-DYSSSDISPLL  390 (518)
Q Consensus       313 ~~-~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~-~~~~g~~~~~~  390 (518)
                      +. .++.|.....    +.+.||++++++++|++...|+|+|+++++|+.|...+.++.......... .+.+|...+++
T Consensus        78 ~~~~i~~g~~~~~----~~~~~~~~~~v~~~G~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~  153 (273)
T 3ilv_A           78 CTDITVSLGLPXR----IAGITYNCVCLVENGIVKGFSAKQFLANEGVHYETRWFTAWPRNHTTTFLYNDVKYPFGDVLY  153 (273)
T ss_dssp             CTTSEEEEEEEEE----ETTEEEEEEEEEETTEEEEEEECSSCCCSTTCCGGGTCCCCCTTCEEEEEETTEEEEEESCCE
T ss_pred             CCCCEEEEEEEEE----ECCEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCCCEEE
T ss_conf             6998899968997----799289999999899999997576289998745441025556777417834875578776589


Q ss_pred             EECCCCEEECCCCHHHHHHHHHHCC-CCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHHHCCCEEEEEECCCC-------
Q ss_conf             0012200102221666558888512-699779996277557676-2899999999999972991999855970-------
Q gi|254780425|r  391 GLSEKLRLYPLLFSDALFHQDINNL-ENVSAILNIIDDSGFMGS-GTDHSFRYAQIQAVEIGLPLIRATNNGV-------  461 (518)
Q Consensus       391 ~~~~~~~~~~~ICyE~~f~~~~r~~-~~a~~lvn~tNd~Wf~~s-~~~qH~~~a~~RAiE~~r~~vra~ntGi-------  461 (518)
                      . .++.+++.+||||..||+..+.. ...+..+.+++++|+..+ ...||..++|.||+||++++++++++|.       
T Consensus       154 ~-~~~~~~g~~IC~d~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~a~e~~~~vv~an~~G~~~~~~~~  232 (273)
T 3ilv_A          154 N-VKDARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRXIY  232 (273)
T ss_dssp             E-ETTEEEEECCTTC----------CGGGTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEECEEESSSSCEE
T ss_pred             E-ECCEEEEEEECCCCCCCCHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEC
T ss_conf             8-789168876346544364677776650322102665444321257888888887653102214521456767664041


Q ss_pred             --CEEECCCCEEEEECCC---CCCEEEEEEECCCCCC
Q ss_conf             --4699899808777389---9827999996067687
Q gi|254780425|r  462 --SAFLDERGQIISSVYA---DRGASIDMHFQPKVRD  493 (518)
Q Consensus       462 --S~~id~~G~i~~~~~~---~~~~~l~~~v~~~~~~  493 (518)
                        |++|||+|+++++.+.   .+++++..++.+..-.
T Consensus       233 G~S~ii~p~G~~~~~~~~~~~~~e~i~~a~idl~~~~  269 (273)
T 3ilv_A          233 DGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATDSAE  269 (273)
T ss_dssp             ECCEEEEETTEEEEECCSSCSSSEEEEEEEEEC----
T ss_pred             CCCEEEECCCHHHHHCCCCCEEEEEEEEEEECCCCCC
T ss_conf             9946995897087635666411257899750365544


No 10 
>>3dla_A Glutamine-dependent NAD(+) synthetase; glutaminase, ammonia tunneling, enzyme, glutamine-amido transferase, ATP-binding, ligase; HET: NXX ONL; 2.35A {Mycobacterium tuberculosis} (A:1-322)
Probab=99.97  E-value=6.3e-30  Score=213.08  Aligned_cols=252  Identities=10%  Similarity=0.021  Sum_probs=178.7

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHH-----------HHHHHH
Q ss_conf             655555321001244203555433335789987543101334668618983121011000112-----------346677
Q gi|254780425|r  237 KFEKISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQ-----------PSILKK  305 (518)
Q Consensus       237 ~~~~~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~-----------~~~~~~  305 (518)
                      ...+..++|+++|.|.++.+   .+..+++..++.+   ++.+.++|||||||.+++.+..+.           ....+.
T Consensus         7 ~~~~~~~kVA~vQ~~~~~~d---~~~nl~~i~~~i~---~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~   80 (322)
T 3dla_A            7 AYQHGFVRVAACTHHTTIGD---PAANAASVLDMAR---ACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAVEDALLD   80 (322)
T ss_dssp             TGGGTEEEEEEEECCCCTTC---HHHHHHHHHHHHH---HHHHTTCSEEECCTTTTTCGGGGGGGGCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEEEECCCCCCC---HHHHHHHHHHHHH---HHHHCCCCEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHH
T ss_conf             10187169999948998789---9999999999999---99988897999688830369966760188899999999999


Q ss_pred             HHHHHCCCCE-EEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHC---CCCCCCC
Q ss_conf             6564107982-42011001234557512100003673212211125633422133100100001211100---1222210
Q gi|254780425|r  306 IASVLKINQL-LIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDF---YMFPLDY  381 (518)
Q Consensus       306 l~~~~~~~~~-li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~---~~~~~~~  381 (518)
                      +.+.++++.. +++|....+    +.++||+.++. ++|+....|+|+|+.|++|+.+.+.+........   .....+.
T Consensus        81 l~~~a~~~~i~iv~g~~~~~----~~~~~~~~~~~-~~g~~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (322)
T 3dla_A           81 LVTESADLLPVLVVGAPLRH----RHRIYNTAVVI-HRGAVLGVVPKSYLPTYREFYERRQMAPGDGERGTIRIGGADVA  155 (322)
T ss_dssp             HHHHGGGCCSEEEEEEEEEE----TTEEEEEEEEE-ETTEEEEEEECSCCCEETTEEHHHHCBCCTTCCSEEESSSCEEE
T ss_pred             HHHHHCCCCEEEEEEEEEEE----CCEEEEEEEEE-ECCEEEEEECCEECCCCCCCCEEECCCCCCCCCCEEEECCCCCC
T ss_conf             99970516859999999968----99499999999-89989999717718799874534335567877753883462245


Q ss_pred             CCCCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             1358776200012200102221666558888512--69977999627755767628999999999999729919998559
Q gi|254780425|r  382 SSSDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNN  459 (518)
Q Consensus       382 ~~g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~nt  459 (518)
                      .+++........++.+++.+||||..||+..+..  ++++.++..+++.+...++..||..+++.||+||+.++++|++.
T Consensus       156 ~~~~~~~~~~~~~~~~ig~~IC~D~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~  235 (322)
T 3dla_A          156 FGTDLLFAASDLPGFVLHVEICEDMFVPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAG  235 (322)
T ss_dssp             BSSSEEEEETTCTTCEEEEEEGGGGTSSSCHHHHHHHTTCCEEEEECCCCCCTTHHHHHHHHHHHHHHHTTSEEEEECCC
T ss_pred             CCCCCCEEEEEECCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             67884135785068678877614555550679999863675323665555210123478899899997528726886331


Q ss_pred             CC----------CEEECCCCEEEEECCCCC--CEEEEEEECCCCCCCHHHHH
Q ss_conf             70----------469989980877738998--27999996067687687865
Q gi|254780425|r  460 GV----------SAFLDERGQIISSVYADR--GASIDMHFQPKVRDSFRSSI  499 (518)
Q Consensus       460 Gi----------S~~id~~G~i~~~~~~~~--~~~l~~~v~~~~~~T~y~~~  499 (518)
                      |.          |+++||+|+++.+.+.++  ++++.+++.+....+...++
T Consensus       236 ~~~~~~~~~~g~S~v~~p~G~~l~~~~~~~~~~~i~~a~id~~~~~~~r~~~  287 (322)
T 3dla_A          236 EGESTTDLAWDGQTMIWENGALLAESERFPKGVRRSVADVDTELLRSERLRM  287 (322)
T ss_dssp             TTSCCSSCCCCCCEEEEETTEEEEECCSSCSSCEEEEEEEEHHHHHHHHHHC
T ss_pred             CCCCCCCEEECCCEEEECCCCEEEECCCCCCCEEEEEEEEEHHHHHHHHHHC
T ss_conf             3343441674475699359937760246665306999995379989888617


No 11 
>>2e11_A Hydrolase; dimethylarsenic inhibitor complex, cacodylate; 1.73A {Xanthomonas campestris PV} (A:)
Probab=99.97  E-value=2.2e-30  Score=216.09  Aligned_cols=231  Identities=11%  Similarity=-0.019  Sum_probs=180.4

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHH--------HHHHHHHHHHHCC
Q ss_conf             55321001244203555433335789987543101334668618983121011000112--------3466776564107
Q gi|254780425|r  241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQ--------PSILKKIASVLKI  312 (518)
Q Consensus       241 ~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~--------~~~~~~l~~~~~~  312 (518)
                      .+++|+++|+++.+.++   ++..+++.++.+    ...+++||||+||.+++.+..++        ....+.+.+++++
T Consensus         2 ~~~kia~vQ~~~~~~d~---~~n~~~~~~~i~----~A~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~l~~~a~~   74 (266)
T 2e11_A            2 HDLRISLVQGSTRWHDP---AGNRDYYGALLE----PLAGQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAAR   74 (266)
T ss_dssp             CCEEEEEEECCCCTTCH---HHHHHHHHHHHG----GGTTTCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCCCCH---HHHHHHHHHHHH----HHHCCCCEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf             96299999288997699---999999999999----97389989994886424797246678775154678999999875


Q ss_pred             -CCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCEE
Q ss_conf             -9824201100123455751210000367321221112563342213310010000121110012222101358776200
Q gi|254780425|r  313 -NQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISPLLG  391 (518)
Q Consensus       313 -~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~~~~  391 (518)
                       +..+++|....+    +++.||++++++++|.+..+|+|+++.++.|...+                  .+|...+.+.
T Consensus        75 ~~~~i~~g~~~~~----~~~~~n~~~vi~~~g~~~~~~k~~~~~~~~e~~~~------------------~~g~~~~~~~  132 (266)
T 2e11_A           75 LGAAITGSVQLRT----EHGVFNRLLWATPDGALQYYDKRHLFRFGNEHLRY------------------AAGRERLCVE  132 (266)
T ss_dssp             HTSEEEEEEEEEE----TTEEEEEEEEECTTSCEEEEECSSCCGGGTTTTTS------------------BCCCSCCCEE
T ss_pred             CCCCCCEEEECCC----CCCCCCCEEECCCCCCCEEECCCCCCCCCCCEECC------------------CCCCCCEEEE
T ss_conf             0555310220145----63101311101688631010111245643203213------------------6677644899


Q ss_pred             ECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCC--CCCCC-HHHHHHHHHHHHHHHCCCEEEEEECC-------
Q ss_conf             012200102221666558888512--6997799962775--57676-28999999999999729919998559-------
Q gi|254780425|r  392 LSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDS--GFMGS-GTDHSFRYAQIQAVEIGLPLIRATNN-------  459 (518)
Q Consensus       392 ~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~--Wf~~s-~~~qH~~~a~~RAiE~~r~~vra~nt-------  459 (518)
                       ..+++++.+||||..||+..|..  +|+++++++|++.  |+..+ ++.||..+++.||+||++++++++++       
T Consensus       133 -~~~~~ig~~IC~D~~~pe~~~~~~~~ga~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~en~~~vv~~n~~G~~~~~~  211 (266)
T 2e11_A          133 -WKGWRINPQVCYDLRFPVFCRNRFDVERPGQLDFDLQLFVANWPSARAYAWKTLLRARAIENLCFVAAVNRVGVDGNQL  211 (266)
T ss_dssp             -ETTEEEEEEEGGGGGCTTTTCCCBSSSSTTSBSCSEEEEEECCCGGGHHHHHHHHHHHHHHTTSEEEEEECEEECTTSC
T ss_pred             -EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC
T ss_conf             -8430113433545437188899998641000042300132214776502555777776542374200133332135775


Q ss_pred             ---CCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHH
Q ss_conf             ---7046998998087773899827999996067687687865568
Q gi|254780425|r  460 ---GVSAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQMR  502 (518)
Q Consensus       460 ---GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~~  502 (518)
                         |.|+++||+|+++++.+.++ +++.+++.+....+.+.+++-+
T Consensus       212 ~~~G~S~i~~p~G~~~~~~~~~e-~~~~a~id~~~~~~~r~~~~~~  256 (266)
T 2e11_A          212 HYAGDSAVIDFLGQPQVEIREQE-QVVTTTISAAALAEHRARFPAM  256 (266)
T ss_dssp             EEEEEEEEECTTSCEEEEEESSC-EEEEEEECHHHHHHHHHHSCGG
T ss_pred             EECCCEEEEECCCCEEEECCCCC-EEEEEEECHHHHHHHHHHCCCH
T ss_conf             06676499909984999879998-6999998689999999978605


No 12 
>>1j31_A Hypothetical protein PH0642; alpha-beta-BETA-alpha sandwich, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii OT3} (A:)
Probab=99.97  E-value=1.2e-29  Score=211.34  Aligned_cols=220  Identities=12%  Similarity=0.044  Sum_probs=166.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHH-------------HHHHHHHHHH
Q ss_conf             321001244203555433335789987543101334668618983121011000112-------------3466776564
Q gi|254780425|r  243 PVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQ-------------PSILKKIASV  309 (518)
Q Consensus       243 ~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~-------------~~~~~~l~~~  309 (518)
                      ++|+++|+|+++.++   ++..+++.++.+   ++.+.++|+|||||.+++.+....             ....+.+.+.
T Consensus         2 mria~~Q~~~~~~~~---~~n~~~i~~~i~---~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~   75 (262)
T 1j31_A            2 VKVGYIQXEPKILEL---DKNYSKAEKLIK---EASKEGAKLVVLPELFDTGYNFESREEVFDVAQQIPEGETTTFLXEL   75 (262)
T ss_dssp             EEEEEEECCCCTTCH---HHHHHHHHHHHH---HHHHTTCSEEECCTTTTTCSCCSSHHHHHTTCBCTTTSHHHHHHHHH
T ss_pred             EEEEEEECCCCCCCH---HHHHHHHHHHHH---HHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             799999789987799---999999999999---99988998999488765678602367888766643798999999999


Q ss_pred             HCC-CCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             107-9824201100123455751210000367321221112563342213310010000121110012222101358776
Q gi|254780425|r  310 LKI-NQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISP  388 (518)
Q Consensus       310 ~~~-~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~  388 (518)
                      +++ +..+++|....+    +++.||++++++++|++..+|+|+++.+..|+..                   .+|....
T Consensus        76 a~~~~~~i~~G~~~~~----~~~~~n~~~~~~~~g~~~~~~~k~~~~~~~~~~~-------------------~~~~~~~  132 (262)
T 1j31_A           76 ARELGLYIVAGTAEKS----GNYLYNSAVVVGPRGYIGKYRKIHLFYREKVFFE-------------------PGDLGFK  132 (262)
T ss_dssp             HHHHTCEEEEEEEEEE----TTEEEEEEEEEETTEEEEEEECSSCCTTHHHHCC-------------------CCCSCSC
T ss_pred             HHHCCEEEEEEEEEEC----CCCCCCCEEEEEECCEEEEEEEECCCCCCCEEEC-------------------CCCCCCE
T ss_conf             9980928997666612----7534320179984437888500214656622577-------------------8998855


Q ss_pred             CEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE---------
Q ss_conf             200012200102221666558888512--699779996277557676289999999999997299199985---------
Q gi|254780425|r  389 LLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRAT---------  457 (518)
Q Consensus       389 ~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~---------  457 (518)
                      .+ ..++.+++..||||..||+..|.+  +|+++++++||+++.      ||...+|.||+|++.++|.++         
T Consensus       133 ~~-~~~~~~ig~~IC~d~~~p~~~~~~~~~g~diil~ps~~~~~------~~~~~~~~~A~e~~~~vv~~n~~g~~~~~~  205 (262)
T 1j31_A          133 VF-DIGFAKVGVXICFDWFFPESARTLALKGAEIIAHPANLVXP------YAPRAXPIRALENRVYTITADRVGEERGLK  205 (262)
T ss_dssp             EE-ECSSCEEEECCGGGGGSHHHHHHHHHTTCSEEEEECCCCSS------CHHHHHHHHHHHHTCEEEEECCCSEETTEE
T ss_pred             EE-EECCCEEEEEECCCCCCCHHHHHHHHHCCCCEEECCCCCHH------HHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf             89-96896699996244247189999987445617741546336------565568888763587599996555468954


Q ss_pred             CCCCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHH
Q ss_conf             59704699899808777389982799999606768768786
Q gi|254780425|r  458 NNGVSAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSS  498 (518)
Q Consensus       458 ntGiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~  498 (518)
                      ++|.|+++||+|+++++++.++++++.+++.+....+.+.|
T Consensus       206 ~~G~S~ii~p~G~~~~~~~~~~~~~i~~did~~~~~~~~~~  246 (262)
T 1j31_A          206 FIGKSLIASPKAEVLSIASETEEEIGVVEIDLNLARNKRLN  246 (262)
T ss_dssp             CCCCCEEECTTSCEEEECCSSCCEEEEEEECHHHHHCCEEE
T ss_pred             CCCCCEEEECCCCEEEECCCCCCEEEEEEEECHHHHHHHHH
T ss_conf             35677899099988987589987799999984698999875


No 13 
>>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, protein structure initiative; 1.90A {Mycobacterium tuberculosis H37RV} (A:233-316)
Probab=75.91  E-value=3.2  Score=19.50  Aligned_cols=38  Identities=26%  Similarity=0.288  Sum_probs=32.5

Q ss_pred             HHHHHHHHCCCEEEEEECCCCCEEECCCCEEEEECCCC
Q ss_conf             99999997299199985597046998998087773899
Q gi|254780425|r  441 YAQIQAVEIGLPLIRATNNGVSAFLDERGQIISSVYAD  478 (518)
Q Consensus       441 ~a~~RAiE~~r~~vra~ntGiS~~id~~G~i~~~~~~~  478 (518)
                      -.+.+++-+||++--+...|..+++||+|+.++-.+..
T Consensus        11 a~EA~~L~~GrrL~p~G~~G~~Aaf~PDGr~iALvee~   48 (84)
T 1sgv_A           11 AAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDE   48 (84)
T ss_dssp             HHHHHHHHTTCCCBCCCCCSCEEEECTTSCEEEEEEEE
T ss_pred             HHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEEC
T ss_conf             99999997879278899988689999999099999953


No 14 
>>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Porphyromonas gingivalis W83} (A:11-84,A:325-349)
Probab=40.58  E-value=13  Score=15.60  Aligned_cols=31  Identities=6%  Similarity=-0.154  Sum_probs=16.8

Q ss_pred             CCHHHHHHHHHHCC---CCCCEEEEECCCCCCCC
Q ss_conf             21666558888512---69977999627755767
Q gi|254780425|r  402 LFSDALFHQDINNL---ENVSAILNIIDDSGFMG  432 (518)
Q Consensus       402 ICyE~~f~~~~r~~---~~a~~lvn~tNd~Wf~~  432 (518)
                      +|-+.......+..   .+.+++...|||.|-|+
T Consensus        44 lv~~~~~~~a~~~~~~~~nV~~i~~~tnD~W~~~   77 (99)
T 1zbr_A           44 VCPDRKRVFGLLPPELHHRLYCFELPSNDTWHGS   77 (99)
T ss_dssp             EESCHHHHHHHSCGGGTTTEEEEECCCSCCCSCC
T ss_pred             EECCHHHHHHHHHHCCCCCEEEEECCCCCHHCCC
T ss_conf             9697999999875417886699992589878985


No 15 
>>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} PDB: 1vkp_A* 2q3u_A* 3h7k_A* (X:1-91,X:361-383)
Probab=35.48  E-value=22  Score=13.98  Aligned_cols=32  Identities=19%  Similarity=0.126  Sum_probs=21.1

Q ss_pred             CCCHHHHHHHHHHCC-CCCCEEEEECCCCCCCC
Q ss_conf             221666558888512-69977999627755767
Q gi|254780425|r  401 LLFSDALFHQDINNL-ENVSAILNIIDDSGFMG  432 (518)
Q Consensus       401 ~ICyE~~f~~~~r~~-~~a~~lvn~tNd~Wf~~  432 (518)
                      ++|.|..-......+ .+-+++...|||.|=|+
T Consensus        62 i~v~~e~~~~ar~~l~~nV~~i~~ptdD~W~~~   94 (114)
T 3h7c_X           62 VCASPAQWENARKQLPEDIRVVEXSXNDSWGGN   94 (114)
T ss_dssp             EEECGGGHHHHHHHSCTTSEEEECCCSSCCTCC
T ss_pred             EEECHHHHHHHHHHCCCCCEEEEECCCCHHCCC
T ss_conf             997979999999757567589990589878985


No 16 
>>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} (A:47-276)
Probab=34.13  E-value=23  Score=13.84  Aligned_cols=12  Identities=8%  Similarity=-0.418  Sum_probs=6.8

Q ss_pred             CCCEEEECCCCC
Q ss_conf             861898312101
Q gi|254780425|r  281 EPVIIVWAYLPF  292 (518)
Q Consensus       281 ~~dLiVWPEsa~  292 (518)
                      +.-+|..-++.=
T Consensus        87 ~~Plv~l~ds~G   98 (230)
T 1vrg_A           87 GIPVIGINDSGG   98 (230)
T ss_dssp             TCCEEEEEEECS
T ss_pred             CCCEEEEECCCC
T ss_conf             884899606777


No 17 
>>1t57_A Conserved protein MTH1675; structural genomics, FMN, methanobacterium thermoautotrophicum, PSI; HET: FMN; 2.30A {Methanothermobacterthermautotrophicus} (A:)
Probab=30.90  E-value=26  Score=13.50  Aligned_cols=10  Identities=0%  Similarity=-0.270  Sum_probs=6.5

Q ss_pred             ECCCCHHHHH
Q ss_conf             0222166655
Q gi|254780425|r  399 YPLLFSDALF  408 (518)
Q Consensus       399 ~~~ICyE~~f  408 (518)
                      |.-+|+|+.-
T Consensus       145 G~KVavEi~i  154 (206)
T 1t57_A          145 GFKVCVEIAI  154 (206)
T ss_dssp             HHHHHHHHHH
T ss_pred             CCEEEEEEEE
T ss_conf             7579999999


No 18 
>>1xny_A Pccase, propionyl-COA carboxylase complex B subunit, PCC; polyketide, polyketide synthase, acyl-COA carboxylase, carboxyltransferase; HET: 191 BTN; 2.20A {Streptomyces coelicolor} (A:46-278)
Probab=30.31  E-value=27  Score=13.43  Aligned_cols=11  Identities=0%  Similarity=-0.342  Sum_probs=6.7

Q ss_pred             CCCEEEECCCC
Q ss_conf             86189831210
Q gi|254780425|r  281 EPVIIVWAYLP  291 (518)
Q Consensus       281 ~~dLiVWPEsa  291 (518)
                      +.-+|..-++.
T Consensus        87 ~lPlv~l~dt~   97 (233)
T 1xny_A           87 GCPVVGINDSG   97 (233)
T ss_dssp             TCCEEEEECCC
T ss_pred             CCCEEEEECCC
T ss_conf             87468876157


No 19 
>>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} (A:183-361,A:548-590)
Probab=29.84  E-value=12  Score=15.66  Aligned_cols=18  Identities=44%  Similarity=0.630  Sum_probs=14.5

Q ss_pred             CCCCCCEEEEEHHHHHCC
Q ss_conf             111256334221331001
Q gi|254780425|r  346 LASSNAKHLVPFAEYLPY  363 (518)
Q Consensus       346 ~~~Y~K~~LVPFGEyiP~  363 (518)
                      ..+|.-..||||.||+--
T Consensus       196 ~~~~~~~~~~~~~~~~~~  213 (222)
T 1v5e_A          196 KERYEAANLVPFREYLEA  213 (222)
T ss_dssp             HHHTTCTTCCCHHHHHHH
T ss_pred             HHHCCHHCCCCHHHHHHH
T ss_conf             863501106634999997


No 20 
>>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein structure initiative, PSI; 1.60A {Chlorobium tepidum tls} (A:13-94,A:334-355)
Probab=29.26  E-value=19  Score=14.43  Aligned_cols=15  Identities=7%  Similarity=-0.166  Sum_probs=10.6

Q ss_pred             CCEEEEECCCCCCCC
Q ss_conf             977999627755767
Q gi|254780425|r  418 VSAILNIIDDSGFMG  432 (518)
Q Consensus       418 a~~lvn~tNd~Wf~~  432 (518)
                      -+++...|||.|.|.
T Consensus        71 V~~i~~ptnD~W~~~   85 (104)
T 1xkn_A           71 IVFHRIPTNDAWLGA   85 (104)
T ss_dssp             EEEEECCCSSSCSCC
T ss_pred             EEEEEECCCCHHCCC
T ss_conf             899982258555984


No 21 
>>1x0u_A Hypothetical methylmalonyl-COA decarboxylase alpha subunit; lyase; 2.20A {Sulfolobus tokodaii str} (A:40-271)
Probab=25.78  E-value=32  Score=12.92  Aligned_cols=25  Identities=4%  Similarity=-0.033  Sum_probs=12.1

Q ss_pred             HHHHHHHHHCCCCCCCCCCEEEECCCCC
Q ss_conf             8998754310133466861898312101
Q gi|254780425|r  265 ERYLSLTALPVSAGELEPVIIVWAYLPF  292 (518)
Q Consensus       265 ~~~~~l~~~~~~~~~~~~dLiVWPEsa~  292 (518)
                      ++..++.++..   +.+.-+|..-++.=
T Consensus        74 ~K~~r~~~~A~---~~~~Piv~l~dt~G   98 (232)
T 1x0u_A           74 NKIVRAYELAL---KVGAPVVGINDSGG   98 (232)
T ss_dssp             HHHHHHHHHHH---HHTCCEEEEECCCS
T ss_pred             CEEEEHHHHHH---HCCCCEEEEECCCC
T ss_conf             12430657988---51885899976887


No 22 
>>1wsa_A Asparaginase, asparagine amidohydrolase; signal, periplasmic; 2.20A {Wolinella succinogenes} (A:206-330)
Probab=22.25  E-value=38  Score=12.49  Aligned_cols=62  Identities=15%  Similarity=0.054  Sum_probs=38.8

Q ss_pred             EEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             0102221666558888512--69977999627755767628999999999999729919998559704
Q gi|254780425|r  397 RLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGVS  462 (518)
Q Consensus       397 ~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~ntGiS  462 (518)
                      ++..+=||=..-++.++..  .+++-+|.-+    ||.-...+.+.-+.-+|.|.|.++|++|.++--
T Consensus        12 ~V~il~~~pG~~~~~i~~~~~~~~~GiVi~~----~G~G~~p~~~~~~l~~a~~~gi~vV~~sr~~~G   75 (125)
T 1wsa_A           12 RVDILYAHPDDTDVLVNAALQAGAKGIIHAG----MGNGNPFPLTQNALEKAAKSGVVVARSSRVGSG   75 (125)
T ss_dssp             CEEEEECCSSCCSHHHHHHHHTTCSEEEEEE----BTTTBCCHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             EEEEEEECCCCCHHHHHHHHHCCCCEEEEEC----CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             0799996899999999999867996799965----579998889999999997679779998667988


No 23 
>>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resistance protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125} (A:80-146)
Probab=21.87  E-value=38  Score=12.44  Aligned_cols=45  Identities=11%  Similarity=0.071  Sum_probs=22.2

Q ss_pred             HHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCC
Q ss_conf             67765641079824201100123455751210000367321221112
Q gi|254780425|r  303 LKKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASS  349 (518)
Q Consensus       303 ~~~l~~~~~~~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y  349 (518)
                      ...+.+.+.++..-+.+.+.....++.  .+.++++.||||..+..|
T Consensus        21 Vd~~~~~l~~~G~~i~~~p~~~~~~~~--~~~~~~~~DPDG~~iEi~   65 (67)
T 3ct8_A           21 VDELTQKLKERGDPILYEDRHPFAGGP--NHYAVFCEDPNRIKVEIV   65 (67)
T ss_dssp             HHHHHHHHHHHTCCBCCTTTTTCTTCT--TCCEEEEECTTCCEEEEE
T ss_pred             HHHHHHHHHHCCCEEECCCCCCCCCCC--CEEEEEEECCCCCEEEEE
T ss_conf             899988898759778359987626899--679999998999999999


No 24 
>>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} (B:56-304)
Probab=21.01  E-value=40  Score=12.33  Aligned_cols=10  Identities=10%  Similarity=0.026  Sum_probs=4.6

Q ss_pred             CCEEEECCCC
Q ss_conf             6189831210
Q gi|254780425|r  282 PVIIVWAYLP  291 (518)
Q Consensus       282 ~dLiVWPEsa  291 (518)
                      .-+|..-++.
T Consensus        99 lPiv~l~dt~  108 (249)
T 2f9y_B           99 CPLICFSASG  108 (249)
T ss_dssp             CCEEEEEEES
T ss_pred             CCEEEEECCC
T ss_conf             9769984577


No 25 
>>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4} (A:102-199)
Probab=20.78  E-value=33  Score=12.84  Aligned_cols=30  Identities=17%  Similarity=0.450  Sum_probs=17.7

Q ss_pred             CCCCCCCCCCCCCCEEEEE-------HHHHHCCCCHH
Q ss_conf             3673212211125633422-------13310010000
Q gi|254780425|r  338 IINSKGEILASSNAKHLVP-------FAEYLPYRNIL  367 (518)
Q Consensus       338 ~~~~~g~~~~~Y~K~~LVP-------FGEyiP~~~~~  367 (518)
                      ++.|+..++-.|++..|+=       =|||+|+.++.
T Consensus        60 ~~sp~nrIVv~Y~~~~L~LLa~R~~~tG~y~~~~el~   96 (98)
T 2c5u_A           60 FVAPTNRIVLAYQEXKIILLNVRENETGEYISYDDIY   96 (98)
T ss_dssp             EECTTSCSSSCCSSCEEEEEEEEETTTCCBCCHHHHH
T ss_pred             EECCCCCEECCCCCCCCEEEEEEECCCCCEEEHHHHH
T ss_conf             9889984533678867122788985888488424422


Done!