Query gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 518 No_of_seqs 165 out of 2706 Neff 8.6 Searched_HMMs 33803 Date Wed Jun 1 12:57:23 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780425.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2vhh_A CG3027-PA; hydrolase; 100.0 6.3E-40 1.8E-44 278.2 14.0 250 234-503 29-324 (324) 2 >1uf5_A N-carbamyl-D-amino aci 100.0 2.1E-37 6.3E-42 261.8 16.4 252 241-503 2-289 (303) 3 >2dyu_A Formamidase; AMIF, CEK 100.0 2.1E-37 6.2E-42 261.8 14.9 244 236-503 7-274 (283) 4 >1f89_A 32.5 kDa protein YLR35 100.0 1.1E-33 3.2E-38 237.6 16.0 248 237-502 5-277 (291) 5 >3hkx_A Amidase; alpha-beta-BE 100.0 1.8E-32 5.2E-37 229.7 16.7 237 236-503 14-272 (283) 6 >2uxy_A Aliphatic amidase; nit 100.0 1.6E-32 4.7E-37 230.0 15.1 241 238-502 8-273 (275) 7 >1ems_A Nitfhit, NIT-fragIle h 100.0 1E-31 3E-36 224.8 14.3 244 237-501 9-276 (285) 8 >2w1v_A Nitrilase-2, nitrilase 100.0 1.2E-30 3.5E-35 217.8 14.9 236 241-501 2-260 (276) 9 >3ilv_A Glutamine-dependent NA 100.0 6.7E-31 2E-35 219.4 11.8 242 241-493 4-269 (273) 10 >3dla_A Glutamine-dependent NA 100.0 6.3E-30 1.9E-34 213.1 14.0 252 237-499 7-287 (322) 11 >2e11_A Hydrolase; dimethylars 100.0 2.2E-30 6.4E-35 216.1 11.2 231 241-502 2-256 (266) 12 >1j31_A Hypothetical protein P 100.0 1.2E-29 3.4E-34 211.3 12.6 220 243-498 2-246 (262) 13 >1sgv_A TRNA pseudouridine syn 75.9 3.2 9.4E-05 19.5 3.6 38 441-478 11-48 (84) 14 >1zbr_A AAQ65385, conserved hy 40.6 13 0.00037 15.6 1.4 31 402-432 44-77 (99) 15 >3h7c_X Agmatine deiminase; st 35.5 22 0.00066 14.0 2.1 32 401-432 62-94 (114) 16 >1vrg_A Propionyl-COA carboxyl 34.1 23 0.00069 13.8 4.5 12 281-292 87-98 (230) 17 >1t57_A Conserved protein MTH1 30.9 26 0.00078 13.5 2.5 10 399-408 145-154 (206) 18 >1xny_A Pccase, propionyl-COA 30.3 27 0.0008 13.4 5.2 11 281-291 87-97 (233) 19 >1v5e_A Pyruvate oxidase; oxid 29.8 12 0.00036 15.7 -0.1 18 346-363 196-213 (222) 20 >1xkn_A Putative peptidyl-argi 29.3 19 0.00056 14.4 0.8 15 418-432 71-85 (104) 21 >1x0u_A Hypothetical methylmal 25.8 32 0.00095 12.9 5.2 25 265-292 74-98 (232) 22 >1wsa_A Asparaginase, asparagi 22.2 38 0.0011 12.5 4.4 62 397-462 12-75 (125) 23 >3ct8_A Protein BH2160, putati 21.9 38 0.0011 12.4 1.6 45 303-349 21-65 (67) 24 >2f9y_B Acetyl-coenzyme A carb 21.0 40 0.0012 12.3 3.3 10 282-291 99-108 (249) 25 >2c5u_A RNA ligase, T4 RNA lig 20.8 33 0.00098 12.8 0.7 30 338-367 60-96 (98) No 1 >>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A (A:36-359) Probab=100.00 E-value=6.3e-40 Score=278.22 Aligned_cols=250 Identities=12% Similarity=0.082 Sum_probs=196.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHH----HHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHH---------- Q ss_conf 45665555532100124420355543----3335789987543101334668618983121011000112---------- Q gi|254780425|r 234 SSLKFEKISPVIRIVQPGINPAIKED----REKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQ---------- 299 (518) Q Consensus 234 ~~~~~~~~~~~V~iVQpni~~~~k~~----~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~---------- 299 (518) ......+..++|++||+|+++..++. .+..++++.++.+ ++.+.++|+|||||.+++.+..++ T Consensus 29 ~~~~~~~~~i~va~vQ~~i~~~~~~~~~~~~~~n~~~~~~~i~---~A~~~gadlvV~PE~~~~g~~~~~~~~~~~~~~~ 105 (324) T 2vhh_A 29 EEQTRKRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIK---AAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFA 105 (324) T ss_dssp CCSSSCCCEEEEEEEECCCCSCSSSCHHHHHHHHHHHHHHHHH---HHHHTTCSEEECCTTTTSCSCC---------CCC T ss_pred HHHCCCCCEEEEEEEECCCCCCCCCCHHHCHHHHHHHHHHHHH---HHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHH T ss_conf 2124788458999983367777768612369999999999999---9998699399846213668985201255588874 Q ss_pred -----HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHC Q ss_conf -----346677656410798242011001234557512100003673212211125633422133100100001211100 Q gi|254780425|r 300 -----PSILKKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDF 374 (518) Q Consensus 300 -----~~~~~~l~~~~~~~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~ 374 (518) ....+.+.+.++++...++.+......+++.++||++++++++|++..+|+|+||.+++|..|.. T Consensus 106 ~~~~~~~~~~~l~~~a~~~~~~i~~g~~~~~~~~~~~~~n~~~~~~~~g~~~~~~~K~~l~~~~~~~~~~---------- 175 (324) T 2vhh_A 106 EEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNEST---------- 175 (324) T ss_dssp BCTTTSHHHHHHHHHHHHTTCEEEEEEEEEETTTTTEEEEEEEEECTTSCEEEEEECSCCCC------------------ T ss_pred HHCCCCHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCEE---------- T ss_conf 4427998999999999983948994113752377972553221125675022022133022322344202---------- Q ss_pred CCCCCCCCCCCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCE Q ss_conf 12222101358776200012200102221666558888512--6997799962775576762899999999999972991 Q gi|254780425|r 375 YMFPLDYSSSDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLP 452 (518) Q Consensus 375 ~~~~~~~~~g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~ 452 (518) ..+.+|...+++. .++.+++++||||..||+..|.+ +|+++++|++++++ ..+++||..+++.||+||+++ T Consensus 176 ----~~~~~g~~~~v~~-~~~~~~g~~ICyD~~~~e~~r~~~~~ga~lil~~~~~~~--~~~~~~~~~~~~~rA~e~~~~ 248 (324) T 2vhh_A 176 ----YYMEGNTGHPVFE-TEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSATIG--RLSEPLWSIEARNAAIANSYF 248 (324) T ss_dssp ------CCCCSCCCEEE-ETTEEEEECCGGGGGCHHHHHHHHHTTCSEEEEEECCBC--TTTHHHHHHHHHHHHHHHTSE T ss_pred ----EEEEECCCCCEEE-CCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCC--CCHHHHHHHHHHHHHHHCCCE T ss_conf ----3664025653056-488458610134554301012333035441232024555--526888888999999982983 Q ss_pred EEEEECCCC-------------------------CEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHH Q ss_conf 999855970-------------------------469989980877738998279999960676876878655689 Q gi|254780425|r 453 LIRATNNGV-------------------------SAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQMRV 503 (518) Q Consensus 453 ~vra~ntGi-------------------------S~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~~~ 503 (518) ++|++|+|. |+++||+|+++++.+.++++++.+++.++...|.|.+||+|+ T Consensus 249 ~v~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~S~i~~p~G~vl~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~ 324 (324) T 2vhh_A 249 TVPINRVGTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRM 324 (324) T ss_dssp EEEEECEECCCCC-----------------EECCCCCBCTTSCBCCCCCSSSCEEEEEEEETTHHHHHHHHHCTTT T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEECCCCCCCEEEEEEEEHHHHHHHHHHCCCCC T ss_conf 9999522226776522333333356778713340599839987876048999889999974799999997688621 No 2 >>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} (A:) Probab=100.00 E-value=2.1e-37 Score=261.78 Aligned_cols=252 Identities=13% Similarity=0.120 Sum_probs=202.8 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHH-----------------HHHHH Q ss_conf 5532100124420355543333578998754310133466861898312101100011-----------------23466 Q gi|254780425|r 241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVD-----------------QPSIL 303 (518) Q Consensus 241 ~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~-----------------~~~~~ 303 (518) .+++|+++|+|+++..++ .++..++..++.+ ++.+.++|+||+||.+++-+..+ ..... T Consensus 2 ~~~kIa~~Q~~~~~~~~d-~~~n~~~i~~~~~---~A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (303) T 1uf5_A 2 RQMILAVGQQGPIARAET-REQVVVRLLDMLT---KAASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPVV 77 (303) T ss_dssp CEEEEEEEEBCCCCTTCC-HHHHHHHHHHHHH---HHHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTTT T ss_pred CEEEEEEECCCCCCCCCC-HHHHHHHHHHHHH---HHHHCCCCEEECCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCHHH T ss_conf 479999992678689858-9999999999999---999888939990888634587200003666776666552488899 Q ss_pred HHHHHHHCC-CCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCC Q ss_conf 776564107-9824201100123455751210000367321221112563342213310010000121110012222101 Q gi|254780425|r 304 KKIASVLKI-NQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYS 382 (518) Q Consensus 304 ~~l~~~~~~-~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~ 382 (518) +.+.+.+++ +..++.|....+....+.++||++++++++|++..+|.|+++.+++|+.|.+.....- ...+. T Consensus 78 ~~~~~~a~~~~~~iv~G~~~~~~~~~~~~~yN~~~~~~~~g~~~~~~kk~~~~~~~~~~~~~~~~~~~-------~~~~~ 150 (303) T 1uf5_A 78 RPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLE-------KRYFE 150 (303) T ss_dssp HHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCH-------HHHCC T ss_pred HHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCHHHCCCCCCCCCCCCCCCCCCCCEEC-------CEEEE T ss_conf 99999999749469887544223148971588999605653122103652479986554343110102-------11573 Q ss_pred CCCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECC------CCCCCCC-HHHHHHHHHHHHHHHCCCEE Q ss_conf 358776200012200102221666558888512--69977999627------7557676-28999999999999729919 Q gi|254780425|r 383 SSDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIID------DSGFMGS-GTDHSFRYAQIQAVEIGLPL 453 (518) Q Consensus 383 ~g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tN------d~Wf~~s-~~~qH~~~a~~RAiE~~r~~ 453 (518) +++........++.|+|.+||||..||+..|.+ +|+++++++++ |+|+..+ ++.||..+++.||+||++++ T Consensus 151 ~~~~~~~v~~~~~~kig~~IC~D~~~p~~~~~~~~~gadlii~p~~~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~~ 230 (303) T 1uf5_A 151 PGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWS 230 (303) T ss_dssp CCSSCSCEEEETTEEEEECCGGGGGCHHHHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHHHHHHHHHHHHHTCEE T ss_pred ECCCCCEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEE T ss_conf 06876505884583687602213101576666762898899970455654544421001100124666666655245303 Q ss_pred EEEECC---------CCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHH Q ss_conf 998559---------70469989980877738998279999960676876878655689 Q gi|254780425|r 454 IRATNN---------GVSAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQMRV 503 (518) Q Consensus 454 vra~nt---------GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~~~ 503 (518) ++++++ |.|++|||+|+++++++.++++++.+++++....|.|+++++|. T Consensus 231 v~an~~g~~~~~~~~G~S~vi~p~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 289 (303) T 1uf5_A 231 AAAGKAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFK 289 (303) T ss_dssp EEEEBCEEETTEEECCCCEEECTTSCEEEECCSSSSEEEEEEEEGGGGHHHHTTTTCHH T ss_pred EECCCCCCCCCCEECCCCEEEECCCCEEEECCCCCCEEEEEEECHHHHHHHHHHCCCHH T ss_conf 31364121336207367489959999998768998879999985899999997588513 No 3 >>2dyu_A Formamidase; AMIF, CEK, catalytic triad, aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori 26695} PDB: 2dyv_A 2e2l_A 2e2k_A (A:1-283) Probab=100.00 E-value=2.1e-37 Score=261.80 Aligned_cols=244 Identities=13% Similarity=0.037 Sum_probs=195.4 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHH-----------HHHH Q ss_conf 66555553210012442035554-33335789987543101334668618983121011000112-----------3466 Q gi|254780425|r 236 LKFEKISPVIRIVQPGINPAIKE-DREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQ-----------PSIL 303 (518) Q Consensus 236 ~~~~~~~~~V~iVQpni~~~~k~-~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~-----------~~~~ 303 (518) ......+++|+++|+|+++..++ +.++..+++.++.+.. ++.+.++|||||||.+++.+..+. .... T Consensus 7 ~~~~~~~~kVa~vQ~~~~~~~~~~d~~~n~~~~~~~i~~~-~A~~~g~dlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~ 85 (283) T 2dyu_A 7 MGKPIEGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHAT-KAGYPGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKET 85 (283) T ss_dssp ------CEEEEEECCBCCCCCSHHHHHHHHHHHHHHHHHH-HHHCTTEEEEECCTTTTTCCCTTTTTSGGGCBCSSSHHH T ss_pred CCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH-HHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHH T ss_conf 8887754389999678777888889999999999999998-615699979997887644688336666888775787799 Q ss_pred HHHHHHHCCCCE-EEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCC Q ss_conf 776564107982-4201100123455751210000367321221112563342213310010000121110012222101 Q gi|254780425|r 304 KKIASVLKINQL-LIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYS 382 (518) Q Consensus 304 ~~l~~~~~~~~~-li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~ 382 (518) +.+.+.+++++. +++|....+ ..++.++||++++++|+|++..+|.|+||+++.|+.++. T Consensus 86 ~~l~~~a~~~~~~ii~g~~~~~-~~~~~~~yNs~~~~~~~g~~~~~~~k~~~~~~~~~~~~~------------------ 146 (283) T 2dyu_A 86 ELYAKACKEAKVYGVFSIMERN-PDSNKNPYNTAIIIDPQGEIILKYRKLFPWNPIEPWYPG------------------ 146 (283) T ss_dssp HHHHHHHHHHTCEEEEEEEECC-SSTTSCCEEEEEEECTTSCEEEEEECSSCCTTTCCCCCC------------------ T ss_pred HHHHHHHHHCCCEEEEEEEEEC-CCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCC------------------ T ss_conf 9999999745818998777850-456980687765303465321022340257631011012------------------ Q ss_pred CCCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 358776200012200102221666558888512--699779996277557676289999999999997299199985597 Q gi|254780425|r 383 SSDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNG 460 (518) Q Consensus 383 ~g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~ntG 460 (518) +.........++.+++.+||||..||+..|.+ +|+++++|++++.. ..+.||..+++.||+||+.++++|+++| T Consensus 147 -~~~~~~~~~~~~~~ig~~IC~d~~~pe~~r~~~~~g~~ll~~p~~~~~---~~~~~~~~~~~~~A~e~~~~vv~an~~G 222 (283) T 2dyu_A 147 -DLGMPVCEGPGGSKLAVCICHDGMIPELAREAAYKGCNVYIRISGYST---QVNDQWILTNRSNAWHNLMYTVSVNLAG 222 (283) T ss_dssp -CSCCCCEECGGGCEEEEEEGGGGGCHHHHHHHHHTTCSEEEEEESSCT---TSHHHHHHHHHHHHHHHTCEEEEEECSB T ss_pred -CCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCC---CCCHHHHHHHHHHHHHCCCEEEEECCCC T ss_conf -466420002588579999703532025678887630333101334576---5302345588999997698499983541 Q ss_pred ---------CCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHH Q ss_conf ---------0469989980877738998279999960676876878655689 Q gi|254780425|r 461 ---------VSAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQMRV 503 (518) Q Consensus 461 ---------iS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~~~ 503 (518) .|++|||+|+++++++.++++++..++.+...+|.|+++|+|. T Consensus 223 ~~~~~~~~G~S~ii~p~G~~l~~~~~~~~~~l~~~idl~~~~~~~~~~~~~~ 274 (283) T 2dyu_A 223 YDNVFYYFGEGQICNFDGTTLVQGHRNPWEIVTGEIYPKMADNARLSWGLEN 274 (283) T ss_dssp SSSSCCCCCEEEEECTTSCEEEECCCCTTCEEEEEECHHHHHHHHHHCSTTC T ss_pred CCCCEEEEEEEEEECCCCCEEEECCCCCCEEEEEEECHHHHHHHHHCCCHHH T ss_conf 3798589721489939968676328998424899975999999997231331 No 4 >>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} (A:) Probab=100.00 E-value=1.1e-33 Score=237.56 Aligned_cols=248 Identities=15% Similarity=0.127 Sum_probs=185.8 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHH-------------HHHHHH Q ss_conf 6555553210012442035554333357899875431013346686189831210110001-------------123466 Q gi|254780425|r 237 KFEKISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIV-------------DQPSIL 303 (518) Q Consensus 237 ~~~~~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~-------------~~~~~~ 303 (518) +....+++|+++|+|++...+. +..++..++.+.+. ....++|||||||.+++-+.. ...... T Consensus 5 ~~~~~~ikIalvQ~~~~~~~~~---~n~~~~~~~i~~a~-~~~~gadlivfPE~~l~Gy~~~~~~~~~~~~~~~~~~~~~ 80 (291) T 1f89_A 5 KILSQKIKVALVQLSGSSPDKM---ANLQRAATFIERAM-KEQPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSV 80 (291) T ss_dssp SSBSSCEEEEEEECCCCCSCHH---HHHHHHHHHHHHHH-HHCTTEEEEECCTTTTSCSCHHHHHHHTTBCCSSSCCHHH T ss_pred HHHHCCCEEEEEECCCCCCCHH---HHHHHHHHHHHHHH-HCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHH T ss_conf 0100572899996778878999---99999999999998-5089985998987545789878898878886422897999 Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCC Q ss_conf 77656410798242011001234557512100003673212211125633422133100100001211100122221013 Q gi|254780425|r 304 KKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSS 383 (518) Q Consensus 304 ~~l~~~~~~~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~ 383 (518) +.+.+.+++.+..++++......+++.++|||+++++++|++..+|+|.+|.++++|.+...... ..+.+ T Consensus 81 ~~~~~~a~~~~~~iv~g~~~~~~~~~~~~yNs~~~i~~~g~i~~~~~k~~l~~~~~~~~~~~~~~----------~~~~~ 150 (291) T 1f89_A 81 QFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHES----------ETLSP 150 (291) T ss_dssp HHHHHHHHHSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHH----------HSCCC T ss_pred HHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCE----------EECCC T ss_conf 99999999739779840267752789979999999823774255430343321135666663310----------22058 Q ss_pred CCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 58776200012200102221666558888512--6997799962775576762899999999999972991999855970 Q gi|254780425|r 384 SDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGV 461 (518) Q Consensus 384 g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~ntGi 461 (518) |.....+. .++.++|..||||..||+..|.+ +|+++++++++. ....+++||..+++.||+||++++++|+++|. T Consensus 151 g~~~~~~~-~~~~~ig~~IC~d~~~pe~~r~l~~~ga~ii~~p~~~--~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~G~ 227 (291) T 1f89_A 151 GEKSTTID-TKYGKFGVGICYDMRFPELAMLSARKGAFAMIYPSAF--NTVTGPLHWHLLARSRAVDNQVYVMLCSPARN 227 (291) T ss_dssp CCCCEEEE-ETTEEEEECCGGGGGCHHHHHHHHHTTEEEEEEECCC--BTTHHHHHHHHHHHHHHHHHTSEEEEECCCCC T ss_pred CCCCCEEC-CCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCC--CCCCCHHHHHHHHHHHHHHCCCEEEEECCCCC T ss_conf 86432003-4873513343334248699999997899599987888--78776123010466688855707999844026 Q ss_pred ----------CEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHH Q ss_conf ----------46998998087773899827999996067687687865568 Q gi|254780425|r 462 ----------SAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQMR 502 (518) Q Consensus 462 ----------S~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~~ 502 (518) |++|||+|+++++++.++ +++.+++.+...+|++.+++.+ T Consensus 228 ~~~~~~~~G~S~vi~p~G~~l~~~~~~e-~~l~a~vd~~~~~~~r~~~~~~ 277 (291) T 1f89_A 228 LQSSYHAYGHSIVVDPRGKIVAEAGEGE-EIIYAELDPEVIESFRQAVPLT 277 (291) T ss_dssp TTSSSCBCCCCEEECTTSCEEEECCSSS-EEEEEEECHHHHHHHHHHSCCC T ss_pred CCCCCEECCCEEEEECCCCEEEECCCCC-EEEEEEECHHHHHHHHHHCCCH T ss_conf 7788611564399939997898889998-3999998689999999968714 No 5 >>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich, hydrolase; 1.66A {Nesterenkonia SP} (A:) Probab=100.00 E-value=1.8e-32 Score=229.71 Aligned_cols=237 Identities=17% Similarity=0.100 Sum_probs=180.9 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHH----------HHHHH Q ss_conf 66555553210012442035554333357899875431013346686189831210110001123----------46677 Q gi|254780425|r 236 LKFEKISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQP----------SILKK 305 (518) Q Consensus 236 ~~~~~~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~~----------~~~~~ 305 (518) ......+++|+++|+|+++.++. +..++..++.+ ++.+.++|+|||||.+++.+..++. ...+. T Consensus 14 ~~~~~~~~kva~~Q~~~~~~~~~---~n~~~i~~~~~---~a~~~~adlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~~~ 87 (283) T 3hkx_A 14 LVIRGSHMRIALMQHTARPLDPQ---HNLDLIDDAAA---RASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAARSR 87 (283) T ss_dssp SCCTTEEEEEEEEEBCCCTTCHH---HHHHHHHHHHH---HHHHTTCSEEECCTTGGGCSCHHHHHHHCCHHHHHHHHHH T ss_pred CEEECCCCEEEEEECCCCCCCHH---HHHHHHHHHHH---HHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHH T ss_conf 45507987899998889889999---99999999999---9998879799958775568984787644202106899999 Q ss_pred HHHHHCCCCE-EEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCC Q ss_conf 6564107982-420110012345575121000036732122111256334221331001000012111001222210135 Q gi|254780425|r 306 IASVLKINQL-LIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSS 384 (518) Q Consensus 306 l~~~~~~~~~-li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g 384 (518) +.+.+++++. ++.|..... ++.++||+.++++++|+....|+|.++.++.|... .+.+| T Consensus 88 l~~~a~~~~~~i~~g~~~~~---~~~~~~n~~~v~~~~g~~~~~~~k~~~~~~~~~~~-----------------~~~~g 147 (283) T 3hkx_A 88 LRGIARDRGIALVWSLPGPE---GPEQRGITAELADEHGEVLASYQKVQLYGPEEKAA-----------------FVPGE 147 (283) T ss_dssp HHHHHHHTTSEEEECCBCSS---CTTTCCBEEEEECTTSCEEEEEECSSCCHHHHHHH-----------------SCCCC T ss_pred HHHHHHHCCCEEEEEEEEEE---CCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCE-----------------ECCCC T ss_conf 99999982988999778983---78624799999956995898981663412354302-----------------31478 Q ss_pred CCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE----- Q ss_conf 8776200012200102221666558888512--699779996277557676289999999999997299199985----- Q gi|254780425|r 385 DISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRAT----- 457 (518) Q Consensus 385 ~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~----- 457 (518) ....++. .++.+++.+||||..||+..|.+ +|++++++++++.+. .+++|..+++.||+||++++++|+ T Consensus 148 ~~~~~~~-~~~~~ig~~IC~D~~~pe~~~~~~~~g~dil~~~s~~~~~---~~~~~~~~~~~rA~e~~~~vv~~n~~G~~ 223 (283) T 3hkx_A 148 QPPPVLS-WGGRQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGD---ETSVPGILLPARAVENGITLAYANHCGPE 223 (283) T ss_dssp SCCCEEE-ETTEEEEECCGGGGGSHHHHHHHHHTTCSEEEEECCCBSC---CTHHHHTHHHHHHHHHTCEEEEECBEEEE T ss_pred CCCCCCE-EECCEECCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCCC---CCCCCHHHHHHHHHHCCCCEEEEEEECCC T ss_conf 5542111-1010113543444347599999973778789991578898---64211016788998646842997510058 Q ss_pred ----CCCCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHH Q ss_conf ----5970469989980877738998279999960676876878655689 Q gi|254780425|r 458 ----NNGVSAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQMRV 503 (518) Q Consensus 458 ----ntGiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~~~ 503 (518) +.|.|++|||+|+++++.+.+ ++++.+++++...+|.|.+++.|. T Consensus 224 ~~~~~~G~S~vi~p~G~~~~~~~~~-e~~l~~~id~~~~~~~r~~~~~~~ 272 (283) T 3hkx_A 224 GGLVFDGGSVVVGPAGQPLGELGVE-PGLLVVDLPDQSQDAGSDSADYLQ 272 (283) T ss_dssp TTEEEECCCEEECTTSCEEEECCSS-CEEEEEEEEC----------CHHH T ss_pred CCEEEECCEEEECCCCCEEEECCCC-CEEEEEEECHHHHHHHHHHCCHHH T ss_conf 9907714069992999899985899-859999976999999998498567 No 6 >>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A (A:1-275) Probab=100.00 E-value=1.6e-32 Score=229.98 Aligned_cols=241 Identities=10% Similarity=0.017 Sum_probs=189.8 Q ss_pred CCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHH-----------HHHHHH Q ss_conf 555553210012442035554-33335789987543101334668618983121011000112-----------346677 Q gi|254780425|r 238 FEKISPVIRIVQPGINPAIKE-DREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQ-----------PSILKK 305 (518) Q Consensus 238 ~~~~~~~V~iVQpni~~~~k~-~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~-----------~~~~~~ 305 (518) ..+.+++|+++|.|+++..|+ +.++..++..++.+... +.+.++|+||+||.+++.+..+. ....+. T Consensus 8 ~~~~~~~va~vQ~~~~~~~~~~d~~~n~~~~~~~i~~~~-A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~ 86 (275) T 2uxy_A 8 SSNDTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMK-QGLPGMDLVVFPEYSLQGIMYDPAEMMETAVAIPGEETEI 86 (275) T ss_dssp CCTTEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHH-HHCTTEEEEECCTTTTTBCCCSHHHHHHHCBCSSSHHHHH T ss_pred CCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHHH T ss_conf 899816999996677775788999999999999999998-2699997997589876678877678777666368679999 Q ss_pred HHHHHCC-CCEEEECCCCCCC-CCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCC Q ss_conf 6564107-9824201100123-4557512100003673212211125633422133100100001211100122221013 Q gi|254780425|r 306 IASVLKI-NQLLIVGSMRKEL-VDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSS 383 (518) Q Consensus 306 l~~~~~~-~~~li~G~~~~~~-~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~ 383 (518) +.+.+++ +..+++|...... ..++.++||++++++++|++..+|.|.+.... ...+.. T Consensus 87 l~~~a~~~~~~ii~g~~~~~~~~~~~~~~yN~~~~~~~~g~i~~~~k~~~~~~~--------------------~~~~~~ 146 (275) T 2uxy_A 87 FSRACRKANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPWCP--------------------IEGWYP 146 (275) T ss_dssp HHHHHHHHTCEEEEEEEEECCTTTTSSCCEEEEEEECTTSCEEEEEECSSCCTT--------------------TCCCBC T ss_pred HHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCC--------------------CCCCCC T ss_conf 999998636446512245322036998578899997788642322102202465--------------------432111 Q ss_pred CCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 58776200012200102221666558888512--6997799962775576762899999999999972991999855970 Q gi|254780425|r 384 SDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGV 461 (518) Q Consensus 384 g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~ntGi 461 (518) |+........++.+++.+||||..||+..|.+ +++++++++||+.| .++.||..+++.||+||+.++++|+++|. T Consensus 147 ~~~~~~~~~~~~~~ig~~IC~d~~~pe~~~~~~~~ga~ii~~~s~~~~---~~~~~~~~~~~~~A~en~~~vv~~n~~G~ 223 (275) T 2uxy_A 147 GGQTYVSEGPKGMKISLIIXDDGNYPEIWRDCAMKGAELIVRCQGYMY---PAKDQQVMMAKAMAWANNCYVAVANAAGF 223 (275) T ss_dssp CCCCCCEECGGGCEEEEEEGGGGGSHHHHHHHHHTTCSEEEEEECCBT---TCHHHHHHHHHHHHHHHTCEEEEEECEEE T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCC---CCCCCCHHHHHHHHHHCCCEEEEEECCCC T ss_conf 124541230357420112122433221000023444210010343465---64222105799999982987999944335 Q ss_pred ---------CEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHH Q ss_conf ---------46998998087773899827999996067687687865568 Q gi|254780425|r 462 ---------SAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQMR 502 (518) Q Consensus 462 ---------S~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~~ 502 (518) |++|||+|+++++++.++++++.+++++...+|.|.+||-+ T Consensus 224 ~~~~~~~g~s~ii~p~G~~~~~~~~~~~~~l~~~id~~~~~~~r~~~~~~ 273 (275) T 2uxy_A 224 DGVYSYFGHSAIIGFDGRTLGECGEEEMGIQYAQLSLSQIRDARANDQSQ 273 (275) T ss_dssp CSSCEEECCCEEECTTSCEEEECCSCTTCEEEEEEEHHHHHHHHHHCCTT T ss_pred CCCCEECCCCCEECCCCCEEEECCCCCCEEEEEEECHHHHHHHHHHCCCH T ss_conf 89944523044048998589976899878999996089999999848706 No 7 >>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} (A:1-285) Probab=99.98 E-value=1e-31 Score=224.80 Aligned_cols=244 Identities=14% Similarity=0.098 Sum_probs=186.9 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHH----------HHHHHHHHH Q ss_conf 6555553210012442035554333357899875431013346686189831210110001----------123466776 Q gi|254780425|r 237 KFEKISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIV----------DQPSILKKI 306 (518) Q Consensus 237 ~~~~~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~----------~~~~~~~~l 306 (518) ......++|+++|++.+.+.+.+.+. ..++.+ ++.+.++||||+||.+++.+.. .+....+.+ T Consensus 9 ~~~~~~~kvA~~Q~~~~~~~~~n~~~----~~~~i~---~a~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~ 81 (285) T 1ems_A 9 TMATGRHFIAVCQMTSDNDLEKNFQA----AKNMIE---RAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKY 81 (285) T ss_dssp -CCCSEEEEEEECBCCCSCHHHHHHH----HHHHHH---HHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHHHHHHHHH T ss_pred HCCCCCEEEEEEECCCCCCHHHHHHH----HHHHHH---HHHHCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHH T ss_conf 03656838999979898799999999----999999---99978396999688840228896676543001782999999 Q ss_pred HHHHCCC-CEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCC Q ss_conf 5641079-824201100123455751210000367321221112563342213310010000121110012222101358 Q gi|254780425|r 307 ASVLKIN-QLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSD 385 (518) Q Consensus 307 ~~~~~~~-~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~ 385 (518) .+.++++ ..++.|....+..++..++|||+++++++|++..+|+|+||++++|+.|.+.. .....+.+|+ T Consensus 82 ~~~a~~~~~~i~~g~~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~~~~~~~~~~---------~~~~~~~~g~ 152 (285) T 1ems_A 82 RELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLM---------ESEFSKAGTE 152 (285) T ss_dssp HHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEE---------GGGTCCCCCS T ss_pred HHHHHHHCCEEEECCEEEECCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCC---------CCCCCCCCCC T ss_conf 9999973999998435766368886079999999458858876502235775789975302---------1013148987 Q ss_pred CCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHHHCCCEEEEEECC--- Q ss_conf 776200012200102221666558888512--699779996277557676-28999999999999729919998559--- Q gi|254780425|r 386 ISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGS-GTDHSFRYAQIQAVEIGLPLIRATNN--- 459 (518) Q Consensus 386 ~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s-~~~qH~~~a~~RAiE~~r~~vra~nt--- 459 (518) ...++.. ++.+++.+||||..||+..|.+ +++++++++|. +..+ +.+|+..+.+.||+||+.+++++++. T Consensus 153 ~~~~~~~-~~~~ig~~IC~D~~~pe~~~~~~~~gadii~~psa---~~~~~~~~~~~~~~~~~a~en~~~~v~~n~~G~~ 228 (285) T 1ems_A 153 MIPPVDT-PIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSA---FTLNTGLAHWETLLRARAIENQCYVVAAAQTGAH 228 (285) T ss_dssp CCCCEEE-TTEEECCCCGGGGGCHHHHHHHHHTTCSEEECCBC---CCHHHHHHHHHHHHHHHHHHHTCEEEECBBEEEE T ss_pred CCCEEEE-CCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCC---CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCC T ss_conf 5404981-89459988433656849999998779839999078---8887459999999999999869779999872055 Q ss_pred -------CCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHH Q ss_conf -------704699899808777389982799999606768768786556 Q gi|254780425|r 460 -------GVSAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQM 501 (518) Q Consensus 460 -------GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~ 501 (518) |.|.++||+|+++.+++.++ +++.+++.+...++.+.+++- T Consensus 229 ~~~~~~~G~S~i~~p~G~~l~~~~~~e-~il~~~id~~~~~~~r~~~~~ 276 (285) T 1ems_A 229 NPKRQSYGHSMVVDPWGAVVAQCSERV-DMCFAEIDLSYVDTLREMQPV 276 (285) T ss_dssp ETTEEEECCCEEECTTSCEEEECCSSS-CEEEEEEEHHHHHHHHHHSCG T ss_pred CCCCEEEEEEEEECCCCCEEEECCCCC-EEEEEEECHHHHHHHHHHCCC T ss_conf 997567334799929986888659998-499999728999999974984 No 8 >>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} (A:) Probab=99.97 E-value=1.2e-30 Score=217.83 Aligned_cols=236 Identities=16% Similarity=0.124 Sum_probs=179.5 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHH---------HHHHHHHHHHC Q ss_conf 553210012442035554333357899875431013346686189831210110001123---------46677656410 Q gi|254780425|r 241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQP---------SILKKIASVLK 311 (518) Q Consensus 241 ~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~~---------~~~~~l~~~~~ 311 (518) .+++|+++|++++++.+.+ .++..++.+ ++.+.++|||||||.+++.+..... ...+.+.+.++ T Consensus 2 ~~~kia~~Q~~~~~~~~~n----~~~i~~~i~---~A~~~gadlivfPE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~a~ 74 (276) T 2w1v_A 2 STFRLALIQLQVSSIKSDN----LTRACSLVR---EAAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAK 74 (276) T ss_dssp CEEEEEEEECCCCSCHHHH----HHHHHHHHH---HHHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHH T ss_pred CCEEEEEEECCCCCCHHHH----HHHHHHHHH---HHHHCCCEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 9769999978589999999----999999999---999884979997878656898789998877678899999999988 Q ss_pred CC-CEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCE Q ss_conf 79-82420110012345575121000036732122111256334221331001000012111001222210135877620 Q gi|254780425|r 312 IN-QLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISPLL 390 (518) Q Consensus 312 ~~-~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~~~ 390 (518) ++ ..+++|....+ +++++||++.+++++|++..+|.|.|+.+++++.+..... ...+.++...+++ T Consensus 75 ~~~~~~~~g~~~~~---~~~~~~Ns~~~i~~~G~i~~~~~k~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 141 (276) T 2w1v_A 75 ESSIYLIGGSIPEE---DAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQE----------SKTLSPGDSFSTF 141 (276) T ss_dssp HHTSEEECCCEEEE---ETTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTEEEEG----------GGTCCCCCCCCEE T ss_pred HCCCEEEEEEEEEC---CCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCC----------CCCCCCCCCCCCC T ss_conf 66908998532020---2586513689864887510155202346654543211223----------3456799853322 Q ss_pred EECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHHHCCCEEEEEECC-------- Q ss_conf 0012200102221666558888512--699779996277557676-28999999999999729919998559-------- Q gi|254780425|r 391 GLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGS-GTDHSFRYAQIQAVEIGLPLIRATNN-------- 459 (518) Q Consensus 391 ~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s-~~~qH~~~a~~RAiE~~r~~vra~nt-------- 459 (518) . .++.+++.+||||..||+..|.. +++++++|+++ ++.+ +..||..+++.||+||+.++++|+|+ T Consensus 142 ~-~~g~~ig~lIC~d~~~p~~~~~~~~~gadli~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~vv~an~~g~~~~~~~ 217 (276) T 2w1v_A 142 D-TPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGA---FNLTTGPAHWELLQRARAVDNQVYVATASPARDDKASYV 217 (276) T ss_dssp E-CSSCEEEECCGGGGGCHHHHHHHHHTTEEEEEEECC---CCTTHHHHHHHHHHHHHHHHHTCEEEEECCCCCTTSSSC T ss_pred C-CCCCEEEEEEEEECCCHHHHHHHHHCCCCEEEECCC---CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCE T ss_conf 3-576325314542024859999999869988974576---787753778888999999973965999725547888857 Q ss_pred --CCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHH Q ss_conf --704699899808777389982799999606768768786556 Q gi|254780425|r 460 --GVSAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQM 501 (518) Q Consensus 460 --GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~ 501 (518) |.|+++||+|+++.+.+.++ +++++++.+....+.+.+++. T Consensus 218 ~~G~S~i~~p~G~~l~~~~~~e-~i~~~~idl~~~~~~r~~~~~ 260 (276) T 2w1v_A 218 AWGHSTVVDPWGQVLTKAGTEE-TILYSDIDLKKLAEIRQQIPI 260 (276) T ss_dssp CCCCCEEECTTSCEEEECCSSS-EEEEEEEEHHHHHHHHHHSCG T ss_pred ECCCEEEECCCCCEEEECCCCC-EEEEEEECHHHHHHHHHHCCC T ss_conf 6666199889998886349987-599999858999999986870 No 9 >>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} (A:1-273) Probab=99.97 E-value=6.7e-31 Score=219.40 Aligned_cols=242 Identities=10% Similarity=-0.017 Sum_probs=176.8 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHH--------HHHHHHHHHHHHCC Q ss_conf 5532100124420355543333578998754310133466861898312101100011--------23466776564107 Q gi|254780425|r 241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVD--------QPSILKKIASVLKI 312 (518) Q Consensus 241 ~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~--------~~~~~~~l~~~~~~ 312 (518) ++++|+++|+|+++.++. ...++..++.+ ++.+.++|||||||.+++.+... .....+.+.+.+++ T Consensus 4 ~~~rva~~Q~~~~~~d~~---~n~~~i~~~i~---~A~~~gadlvvfPE~~l~g~~~~~~~~~~~~~~~~~~~l~~~a~~ 77 (273) T 3ilv_A 4 STIRIGGAAVNQTPIDWE---NNVKNILDAIE---EAKNANVEILCLPELCITGYGCEDLFLTDWVAETAIEYCFEIAAS 77 (273) T ss_dssp CEEEEEEEEECCCTTCHH---HHHHHHHHHHH---HHHHTTCSEEECCTTTTTCSCCGGGGGSHHHHHHHHHHHHHHHTT T ss_pred CCEEEEEEECCCCCCCHH---HHHHHHHHHHH---HHHHCCCCEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 760899996789867699---99999999999---999889969997888312699778730888999999999999986 Q ss_pred CC-EEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCC-CCCCCCCCCCE Q ss_conf 98-24201100123455751210000367321221112563342213310010000121110012222-10135877620 Q gi|254780425|r 313 NQ-LLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPL-DYSSSDISPLL 390 (518) Q Consensus 313 ~~-~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~-~~~~g~~~~~~ 390 (518) +. .++.|..... +.+.||++++++++|++...|+|+|+++++|+.|...+.++.......... .+.+|...+++ T Consensus 78 ~~~~i~~g~~~~~----~~~~~~~~~~v~~~G~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~ 153 (273) T 3ilv_A 78 CTDITVSLGLPXR----IAGITYNCVCLVENGIVKGFSAKQFLANEGVHYETRWFTAWPRNHTTTFLYNDVKYPFGDVLY 153 (273) T ss_dssp CTTSEEEEEEEEE----ETTEEEEEEEEEETTEEEEEEECSSCCCSTTCCGGGTCCCCCTTCEEEEEETTEEEEEESCCE T ss_pred CCCCEEEEEEEEE----ECCEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCCCCEEE T ss_conf 6998899968997----799289999999899999997576289998745441025556777417834875578776589 Q ss_pred EECCCCEEECCCCHHHHHHHHHHCC-CCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHHHCCCEEEEEECCCC------- Q ss_conf 0012200102221666558888512-699779996277557676-2899999999999972991999855970------- Q gi|254780425|r 391 GLSEKLRLYPLLFSDALFHQDINNL-ENVSAILNIIDDSGFMGS-GTDHSFRYAQIQAVEIGLPLIRATNNGV------- 461 (518) Q Consensus 391 ~~~~~~~~~~~ICyE~~f~~~~r~~-~~a~~lvn~tNd~Wf~~s-~~~qH~~~a~~RAiE~~r~~vra~ntGi------- 461 (518) . .++.+++.+||||..||+..+.. ...+..+.+++++|+..+ ...||..++|.||+||++++++++++|. T Consensus 154 ~-~~~~~~g~~IC~d~~~~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~a~e~~~~vv~an~~G~~~~~~~~ 232 (273) T 3ilv_A 154 N-VKDARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANLLGNEAGRXIY 232 (273) T ss_dssp E-ETTEEEEECCTTC----------CGGGTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEECEEESSSSCEE T ss_pred E-ECCEEEEEEECCCCCCCCHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCEEC T ss_conf 8-789168876346544364677776650322102665444321257888888887653102214521456767664041 Q ss_pred --CEEECCCCEEEEECCC---CCCEEEEEEECCCCCC Q ss_conf --4699899808777389---9827999996067687 Q gi|254780425|r 462 --SAFLDERGQIISSVYA---DRGASIDMHFQPKVRD 493 (518) Q Consensus 462 --S~~id~~G~i~~~~~~---~~~~~l~~~v~~~~~~ 493 (518) |++|||+|+++++.+. .+++++..++.+..-. T Consensus 233 G~S~ii~p~G~~~~~~~~~~~~~e~i~~a~idl~~~~ 269 (273) T 3ilv_A 233 DGEVLIAHKGKLIQRNDRLSFKNVNLIYADIATDSAE 269 (273) T ss_dssp ECCEEEEETTEEEEECCSSCSSSEEEEEEEEEC---- T ss_pred CCCEEEECCCHHHHHCCCCCEEEEEEEEEEECCCCCC T ss_conf 9946995897087635666411257899750365544 No 10 >>3dla_A Glutamine-dependent NAD(+) synthetase; glutaminase, ammonia tunneling, enzyme, glutamine-amido transferase, ATP-binding, ligase; HET: NXX ONL; 2.35A {Mycobacterium tuberculosis} (A:1-322) Probab=99.97 E-value=6.3e-30 Score=213.08 Aligned_cols=252 Identities=10% Similarity=0.021 Sum_probs=178.7 Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHH-----------HHHHHH Q ss_conf 655555321001244203555433335789987543101334668618983121011000112-----------346677 Q gi|254780425|r 237 KFEKISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQ-----------PSILKK 305 (518) Q Consensus 237 ~~~~~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~-----------~~~~~~ 305 (518) ...+..++|+++|.|.++.+ .+..+++..++.+ ++.+.++|||||||.+++.+..+. ....+. T Consensus 7 ~~~~~~~kVA~vQ~~~~~~d---~~~nl~~i~~~i~---~A~~~gadlivfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~ 80 (322) T 3dla_A 7 AYQHGFVRVAACTHHTTIGD---PAANAASVLDMAR---ACHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAVEDALLD 80 (322) T ss_dssp TGGGTEEEEEEEECCCCTTC---HHHHHHHHHHHHH---HHHHTTCSEEECCTTTTTCGGGGGGGGCHHHHHHHHHHHHH T ss_pred CCCCCEEEEEEEECCCCCCC---HHHHHHHHHHHHH---HHHHCCCCEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHH T ss_conf 10187169999948998789---9999999999999---99988897999688830369966760188899999999999 Q ss_pred HHHHHCCCCE-EEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHC---CCCCCCC Q ss_conf 6564107982-42011001234557512100003673212211125633422133100100001211100---1222210 Q gi|254780425|r 306 IASVLKINQL-LIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDF---YMFPLDY 381 (518) Q Consensus 306 l~~~~~~~~~-li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~---~~~~~~~ 381 (518) +.+.++++.. +++|....+ +.++||+.++. ++|+....|+|+|+.|++|+.+.+.+........ .....+. T Consensus 81 l~~~a~~~~i~iv~g~~~~~----~~~~~~~~~~~-~~g~~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (322) T 3dla_A 81 LVTESADLLPVLVVGAPLRH----RHRIYNTAVVI-HRGAVLGVVPKSYLPTYREFYERRQMAPGDGERGTIRIGGADVA 155 (322) T ss_dssp HHHHGGGCCSEEEEEEEEEE----TTEEEEEEEEE-ETTEEEEEEECSCCCEETTEEHHHHCBCCTTCCSEEESSSCEEE T ss_pred HHHHHCCCCEEEEEEEEEEE----CCEEEEEEEEE-ECCEEEEEECCEECCCCCCCCEEECCCCCCCCCCEEEECCCCCC T ss_conf 99970516859999999968----99499999999-89989999717718799874534335567877753883462245 Q ss_pred CCCCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 1358776200012200102221666558888512--69977999627755767628999999999999729919998559 Q gi|254780425|r 382 SSSDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNN 459 (518) Q Consensus 382 ~~g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~nt 459 (518) .+++........++.+++.+||||..||+..+.. ++++.++..+++.+...++..||..+++.||+||+.++++|++. T Consensus 156 ~~~~~~~~~~~~~~~~ig~~IC~D~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~ 235 (322) T 3dla_A 156 FGTDLLFAASDLPGFVLHVEICEDMFVPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYVYAAAG 235 (322) T ss_dssp BSSSEEEEETTCTTCEEEEEEGGGGTSSSCHHHHHHHTTCCEEEEECCCCCCTTHHHHHHHHHHHHHHHTTSEEEEECCC T ss_pred CCCCCCEEEEEECCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 67884135785068678877614555550679999863675323665555210123478899899997528726886331 Q ss_pred CC----------CEEECCCCEEEEECCCCC--CEEEEEEECCCCCCCHHHHH Q ss_conf 70----------469989980877738998--27999996067687687865 Q gi|254780425|r 460 GV----------SAFLDERGQIISSVYADR--GASIDMHFQPKVRDSFRSSI 499 (518) Q Consensus 460 Gi----------S~~id~~G~i~~~~~~~~--~~~l~~~v~~~~~~T~y~~~ 499 (518) |. |+++||+|+++.+.+.++ ++++.+++.+....+...++ T Consensus 236 ~~~~~~~~~~g~S~v~~p~G~~l~~~~~~~~~~~i~~a~id~~~~~~~r~~~ 287 (322) T 3dla_A 236 EGESTTDLAWDGQTMIWENGALLAESERFPKGVRRSVADVDTELLRSERLRM 287 (322) T ss_dssp TTSCCSSCCCCCCEEEEETTEEEEECCSSCSSCEEEEEEEEHHHHHHHHHHC T ss_pred CCCCCCCEEECCCEEEECCCCEEEECCCCCCCEEEEEEEEEHHHHHHHHHHC T ss_conf 3343441674475699359937760246665306999995379989888617 No 11 >>2e11_A Hydrolase; dimethylarsenic inhibitor complex, cacodylate; 1.73A {Xanthomonas campestris PV} (A:) Probab=99.97 E-value=2.2e-30 Score=216.09 Aligned_cols=231 Identities=11% Similarity=-0.019 Sum_probs=180.4 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHH--------HHHHHHHHHHHCC Q ss_conf 55321001244203555433335789987543101334668618983121011000112--------3466776564107 Q gi|254780425|r 241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQ--------PSILKKIASVLKI 312 (518) Q Consensus 241 ~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~--------~~~~~~l~~~~~~ 312 (518) .+++|+++|+++.+.++ ++..+++.++.+ ...+++||||+||.+++.+..++ ....+.+.+++++ T Consensus 2 ~~~kia~vQ~~~~~~d~---~~n~~~~~~~i~----~A~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~l~~~a~~ 74 (266) T 2e11_A 2 HDLRISLVQGSTRWHDP---AGNRDYYGALLE----PLAGQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAAR 74 (266) T ss_dssp CCEEEEEEECCCCTTCH---HHHHHHHHHHHG----GGTTTCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHHH T ss_pred CCEEEEEEECCCCCCCH---HHHHHHHHHHHH----HHHCCCCEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH T ss_conf 96299999288997699---999999999999----97389989994886424797246678775154678999999875 Q ss_pred -CCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCEE Q ss_conf -9824201100123455751210000367321221112563342213310010000121110012222101358776200 Q gi|254780425|r 313 -NQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISPLLG 391 (518) Q Consensus 313 -~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~~~~ 391 (518) +..+++|....+ +++.||++++++++|.+..+|+|+++.++.|...+ .+|...+.+. T Consensus 75 ~~~~i~~g~~~~~----~~~~~n~~~vi~~~g~~~~~~k~~~~~~~~e~~~~------------------~~g~~~~~~~ 132 (266) T 2e11_A 75 LGAAITGSVQLRT----EHGVFNRLLWATPDGALQYYDKRHLFRFGNEHLRY------------------AAGRERLCVE 132 (266) T ss_dssp HTSEEEEEEEEEE----TTEEEEEEEEECTTSCEEEEECSSCCGGGTTTTTS------------------BCCCSCCCEE T ss_pred CCCCCCEEEECCC----CCCCCCCEEECCCCCCCEEECCCCCCCCCCCEECC------------------CCCCCCEEEE T ss_conf 0555310220145----63101311101688631010111245643203213------------------6677644899 Q ss_pred ECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCC--CCCCC-HHHHHHHHHHHHHHHCCCEEEEEECC------- Q ss_conf 012200102221666558888512--6997799962775--57676-28999999999999729919998559------- Q gi|254780425|r 392 LSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDS--GFMGS-GTDHSFRYAQIQAVEIGLPLIRATNN------- 459 (518) Q Consensus 392 ~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~--Wf~~s-~~~qH~~~a~~RAiE~~r~~vra~nt------- 459 (518) ..+++++.+||||..||+..|.. +|+++++++|++. |+..+ ++.||..+++.||+||++++++++++ T Consensus 133 -~~~~~ig~~IC~D~~~pe~~~~~~~~ga~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~en~~~vv~~n~~G~~~~~~ 211 (266) T 2e11_A 133 -WKGWRINPQVCYDLRFPVFCRNRFDVERPGQLDFDLQLFVANWPSARAYAWKTLLRARAIENLCFVAAVNRVGVDGNQL 211 (266) T ss_dssp -ETTEEEEEEEGGGGGCTTTTCCCBSSSSTTSBSCSEEEEEECCCGGGHHHHHHHHHHHHHHTTSEEEEEECEEECTTSC T ss_pred -EEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCC T ss_conf -8430113433545437188899998641000042300132214776502555777776542374200133332135775 Q ss_pred ---CCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHH Q ss_conf ---7046998998087773899827999996067687687865568 Q gi|254780425|r 460 ---GVSAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSSIQMR 502 (518) Q Consensus 460 ---GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~~g~~ 502 (518) |.|+++||+|+++++.+.++ +++.+++.+....+.+.+++-+ T Consensus 212 ~~~G~S~i~~p~G~~~~~~~~~e-~~~~a~id~~~~~~~r~~~~~~ 256 (266) T 2e11_A 212 HYAGDSAVIDFLGQPQVEIREQE-QVVTTTISAAALAEHRARFPAM 256 (266) T ss_dssp EEEEEEEEECTTSCEEEEEESSC-EEEEEEECHHHHHHHHHHSCGG T ss_pred EECCCEEEEECCCCEEEECCCCC-EEEEEEECHHHHHHHHHHCCCH T ss_conf 06676499909984999879998-6999998689999999978605 No 12 >>1j31_A Hypothetical protein PH0642; alpha-beta-BETA-alpha sandwich, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii OT3} (A:) Probab=99.97 E-value=1.2e-29 Score=211.34 Aligned_cols=220 Identities=12% Similarity=0.044 Sum_probs=166.7 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHH-------------HHHHHHHHHH Q ss_conf 321001244203555433335789987543101334668618983121011000112-------------3466776564 Q gi|254780425|r 243 PVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQ-------------PSILKKIASV 309 (518) Q Consensus 243 ~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~-------------~~~~~~l~~~ 309 (518) ++|+++|+|+++.++ ++..+++.++.+ ++.+.++|+|||||.+++.+.... ....+.+.+. T Consensus 2 mria~~Q~~~~~~~~---~~n~~~i~~~i~---~A~~~gadlivfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (262) T 1j31_A 2 VKVGYIQXEPKILEL---DKNYSKAEKLIK---EASKEGAKLVVLPELFDTGYNFESREEVFDVAQQIPEGETTTFLXEL 75 (262) T ss_dssp EEEEEEECCCCTTCH---HHHHHHHHHHHH---HHHHTTCSEEECCTTTTTCSCCSSHHHHHTTCBCTTTSHHHHHHHHH T ss_pred EEEEEEECCCCCCCH---HHHHHHHHHHHH---HHHHCCCCEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 799999789987799---999999999999---99988998999488765678602367888766643798999999999 Q ss_pred HCC-CCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 107-9824201100123455751210000367321221112563342213310010000121110012222101358776 Q gi|254780425|r 310 LKI-NQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISP 388 (518) Q Consensus 310 ~~~-~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~ 388 (518) +++ +..+++|....+ +++.||++++++++|++..+|+|+++.+..|+.. .+|.... T Consensus 76 a~~~~~~i~~G~~~~~----~~~~~n~~~~~~~~g~~~~~~~k~~~~~~~~~~~-------------------~~~~~~~ 132 (262) T 1j31_A 76 ARELGLYIVAGTAEKS----GNYLYNSAVVVGPRGYIGKYRKIHLFYREKVFFE-------------------PGDLGFK 132 (262) T ss_dssp HHHHTCEEEEEEEEEE----TTEEEEEEEEEETTEEEEEEECSSCCTTHHHHCC-------------------CCCSCSC T ss_pred HHHCCEEEEEEEEEEC----CCCCCCCEEEEEECCEEEEEEEECCCCCCCEEEC-------------------CCCCCCE T ss_conf 9980928997666612----7534320179984437888500214656622577-------------------8998855 Q ss_pred CEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE--------- Q ss_conf 200012200102221666558888512--699779996277557676289999999999997299199985--------- Q gi|254780425|r 389 LLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRAT--------- 457 (518) Q Consensus 389 ~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~--------- 457 (518) .+ ..++.+++..||||..||+..|.+ +|+++++++||+++. ||...+|.||+|++.++|.++ T Consensus 133 ~~-~~~~~~ig~~IC~d~~~p~~~~~~~~~g~diil~ps~~~~~------~~~~~~~~~A~e~~~~vv~~n~~g~~~~~~ 205 (262) T 1j31_A 133 VF-DIGFAKVGVXICFDWFFPESARTLALKGAEIIAHPANLVXP------YAPRAXPIRALENRVYTITADRVGEERGLK 205 (262) T ss_dssp EE-ECSSCEEEECCGGGGGSHHHHHHHHHTTCSEEEEECCCCSS------CHHHHHHHHHHHHTCEEEEECCCSEETTEE T ss_pred EE-EECCCEEEEEECCCCCCCHHHHHHHHHCCCCEEECCCCCHH------HHHHHHHHHHHHCCCEEEEEECCCCCCCCC T ss_conf 89-96896699996244247189999987445617741546336------565568888763587599996555468954 Q ss_pred CCCCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHHHH Q ss_conf 59704699899808777389982799999606768768786 Q gi|254780425|r 458 NNGVSAFLDERGQIISSVYADRGASIDMHFQPKVRDSFRSS 498 (518) Q Consensus 458 ntGiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y~~ 498 (518) ++|.|+++||+|+++++++.++++++.+++.+....+.+.| T Consensus 206 ~~G~S~ii~p~G~~~~~~~~~~~~~i~~did~~~~~~~~~~ 246 (262) T 1j31_A 206 FIGKSLIASPKAEVLSIASETEEEIGVVEIDLNLARNKRLN 246 (262) T ss_dssp CCCCCEEECTTSCEEEECCSSCCEEEEEEECHHHHHCCEEE T ss_pred CCCCCEEEECCCCEEEECCCCCCEEEEEEEECHHHHHHHHH T ss_conf 35677899099988987589987799999984698999875 No 13 >>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, protein structure initiative; 1.90A {Mycobacterium tuberculosis H37RV} (A:233-316) Probab=75.91 E-value=3.2 Score=19.50 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=32.5 Q ss_pred HHHHHHHHCCCEEEEEECCCCCEEECCCCEEEEECCCC Q ss_conf 99999997299199985597046998998087773899 Q gi|254780425|r 441 YAQIQAVEIGLPLIRATNNGVSAFLDERGQIISSVYAD 478 (518) Q Consensus 441 ~a~~RAiE~~r~~vra~ntGiS~~id~~G~i~~~~~~~ 478 (518) -.+.+++-+||++--+...|..+++||+|+.++-.+.. T Consensus 11 a~EA~~L~~GrrL~p~G~~G~~Aaf~PDGr~iALvee~ 48 (84) T 1sgv_A 11 AAEASAAANGRSLPAVGIDGVYAACDADGRVIALLRDE 48 (84) T ss_dssp HHHHHHHHTTCCCBCCCCCSCEEEECTTSCEEEEEEEE T ss_pred HHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEEEC T ss_conf 99999997879278899988689999999099999953 No 14 >>1zbr_A AAQ65385, conserved hypothetical protein; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Porphyromonas gingivalis W83} (A:11-84,A:325-349) Probab=40.58 E-value=13 Score=15.60 Aligned_cols=31 Identities=6% Similarity=-0.154 Sum_probs=16.8 Q ss_pred CCHHHHHHHHHHCC---CCCCEEEEECCCCCCCC Q ss_conf 21666558888512---69977999627755767 Q gi|254780425|r 402 LFSDALFHQDINNL---ENVSAILNIIDDSGFMG 432 (518) Q Consensus 402 ICyE~~f~~~~r~~---~~a~~lvn~tNd~Wf~~ 432 (518) +|-+.......+.. .+.+++...|||.|-|+ T Consensus 44 lv~~~~~~~a~~~~~~~~nV~~i~~~tnD~W~~~ 77 (99) T 1zbr_A 44 VCPDRKRVFGLLPPELHHRLYCFELPSNDTWHGS 77 (99) T ss_dssp EESCHHHHHHHSCGGGTTTEEEEECCCSCCCSCC T ss_pred EECCHHHHHHHHHHCCCCCEEEEECCCCCHHCCC T ss_conf 9697999999875417886699992589878985 No 15 >>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} PDB: 1vkp_A* 2q3u_A* 3h7k_A* (X:1-91,X:361-383) Probab=35.48 E-value=22 Score=13.98 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=21.1 Q ss_pred CCCHHHHHHHHHHCC-CCCCEEEEECCCCCCCC Q ss_conf 221666558888512-69977999627755767 Q gi|254780425|r 401 LLFSDALFHQDINNL-ENVSAILNIIDDSGFMG 432 (518) Q Consensus 401 ~ICyE~~f~~~~r~~-~~a~~lvn~tNd~Wf~~ 432 (518) ++|.|..-......+ .+-+++...|||.|=|+ T Consensus 62 i~v~~e~~~~ar~~l~~nV~~i~~ptdD~W~~~ 94 (114) T 3h7c_X 62 VCASPAQWENARKQLPEDIRVVEXSXNDSWGGN 94 (114) T ss_dssp EEECGGGHHHHHHHSCTTSEEEECCCSSCCTCC T ss_pred EEECHHHHHHHHHHCCCCCEEEEECCCCHHCCC T ss_conf 997979999999757567589990589878985 No 16 >>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} (A:47-276) Probab=34.13 E-value=23 Score=13.84 Aligned_cols=12 Identities=8% Similarity=-0.418 Sum_probs=6.8 Q ss_pred CCCEEEECCCCC Q ss_conf 861898312101 Q gi|254780425|r 281 EPVIIVWAYLPF 292 (518) Q Consensus 281 ~~dLiVWPEsa~ 292 (518) +.-+|..-++.= T Consensus 87 ~~Plv~l~ds~G 98 (230) T 1vrg_A 87 GIPVIGINDSGG 98 (230) T ss_dssp TCCEEEEEEECS T ss_pred CCCEEEEECCCC T ss_conf 884899606777 No 17 >>1t57_A Conserved protein MTH1675; structural genomics, FMN, methanobacterium thermoautotrophicum, PSI; HET: FMN; 2.30A {Methanothermobacterthermautotrophicus} (A:) Probab=30.90 E-value=26 Score=13.50 Aligned_cols=10 Identities=0% Similarity=-0.270 Sum_probs=6.5 Q ss_pred ECCCCHHHHH Q ss_conf 0222166655 Q gi|254780425|r 399 YPLLFSDALF 408 (518) Q Consensus 399 ~~~ICyE~~f 408 (518) |.-+|+|+.- T Consensus 145 G~KVavEi~i 154 (206) T 1t57_A 145 GFKVCVEIAI 154 (206) T ss_dssp HHHHHHHHHH T ss_pred CCEEEEEEEE T ss_conf 7579999999 No 18 >>1xny_A Pccase, propionyl-COA carboxylase complex B subunit, PCC; polyketide, polyketide synthase, acyl-COA carboxylase, carboxyltransferase; HET: 191 BTN; 2.20A {Streptomyces coelicolor} (A:46-278) Probab=30.31 E-value=27 Score=13.43 Aligned_cols=11 Identities=0% Similarity=-0.342 Sum_probs=6.7 Q ss_pred CCCEEEECCCC Q ss_conf 86189831210 Q gi|254780425|r 281 EPVIIVWAYLP 291 (518) Q Consensus 281 ~~dLiVWPEsa 291 (518) +.-+|..-++. T Consensus 87 ~lPlv~l~dt~ 97 (233) T 1xny_A 87 GCPVVGINDSG 97 (233) T ss_dssp TCCEEEEECCC T ss_pred CCCEEEEECCC T ss_conf 87468876157 No 19 >>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} (A:183-361,A:548-590) Probab=29.84 E-value=12 Score=15.66 Aligned_cols=18 Identities=44% Similarity=0.630 Sum_probs=14.5 Q ss_pred CCCCCCEEEEEHHHHHCC Q ss_conf 111256334221331001 Q gi|254780425|r 346 LASSNAKHLVPFAEYLPY 363 (518) Q Consensus 346 ~~~Y~K~~LVPFGEyiP~ 363 (518) ..+|.-..||||.||+-- T Consensus 196 ~~~~~~~~~~~~~~~~~~ 213 (222) T 1v5e_A 196 KERYEAANLVPFREYLEA 213 (222) T ss_dssp HHHTTCTTCCCHHHHHHH T ss_pred HHHCCHHCCCCHHHHHHH T ss_conf 863501106634999997 No 20 >>1xkn_A Putative peptidyl-arginine deiminase; alpha-beta protein, NESG, structural genomics, protein structure initiative, PSI; 1.60A {Chlorobium tepidum tls} (A:13-94,A:334-355) Probab=29.26 E-value=19 Score=14.43 Aligned_cols=15 Identities=7% Similarity=-0.166 Sum_probs=10.6 Q ss_pred CCEEEEECCCCCCCC Q ss_conf 977999627755767 Q gi|254780425|r 418 VSAILNIIDDSGFMG 432 (518) Q Consensus 418 a~~lvn~tNd~Wf~~ 432 (518) -+++...|||.|.|. T Consensus 71 V~~i~~ptnD~W~~~ 85 (104) T 1xkn_A 71 IVFHRIPTNDAWLGA 85 (104) T ss_dssp EEEEECCCSSSCSCC T ss_pred EEEEEECCCCHHCCC T ss_conf 899982258555984 No 21 >>1x0u_A Hypothetical methylmalonyl-COA decarboxylase alpha subunit; lyase; 2.20A {Sulfolobus tokodaii str} (A:40-271) Probab=25.78 E-value=32 Score=12.92 Aligned_cols=25 Identities=4% Similarity=-0.033 Sum_probs=12.1 Q ss_pred HHHHHHHHHCCCCCCCCCCEEEECCCCC Q ss_conf 8998754310133466861898312101 Q gi|254780425|r 265 ERYLSLTALPVSAGELEPVIIVWAYLPF 292 (518) Q Consensus 265 ~~~~~l~~~~~~~~~~~~dLiVWPEsa~ 292 (518) ++..++.++.. +.+.-+|..-++.= T Consensus 74 ~K~~r~~~~A~---~~~~Piv~l~dt~G 98 (232) T 1x0u_A 74 NKIVRAYELAL---KVGAPVVGINDSGG 98 (232) T ss_dssp HHHHHHHHHHH---HHTCCEEEEECCCS T ss_pred CEEEEHHHHHH---HCCCCEEEEECCCC T ss_conf 12430657988---51885899976887 No 22 >>1wsa_A Asparaginase, asparagine amidohydrolase; signal, periplasmic; 2.20A {Wolinella succinogenes} (A:206-330) Probab=22.25 E-value=38 Score=12.49 Aligned_cols=62 Identities=15% Similarity=0.054 Sum_probs=38.8 Q ss_pred EEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCC Q ss_conf 0102221666558888512--69977999627755767628999999999999729919998559704 Q gi|254780425|r 397 RLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGVS 462 (518) Q Consensus 397 ~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~ntGiS 462 (518) ++..+=||=..-++.++.. .+++-+|.-+ ||.-...+.+.-+.-+|.|.|.++|++|.++-- T Consensus 12 ~V~il~~~pG~~~~~i~~~~~~~~~GiVi~~----~G~G~~p~~~~~~l~~a~~~gi~vV~~sr~~~G 75 (125) T 1wsa_A 12 RVDILYAHPDDTDVLVNAALQAGAKGIIHAG----MGNGNPFPLTQNALEKAAKSGVVVARSSRVGSG 75 (125) T ss_dssp CEEEEECCSSCCSHHHHHHHHTTCSEEEEEE----BTTTBCCHHHHHHHHHHHHTTCEEEEEESSSSS T ss_pred EEEEEEECCCCCHHHHHHHHHCCCCEEEEEC----CCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 0799996899999999999867996799965----579998889999999997679779998667988 No 23 >>3ct8_A Protein BH2160, putative glyoxalase; NP_243026.1, glyoxalase/bleomycin resistance protein/dioxygenase superfamily, structural genomics; HET: UNL; 2.10A {Bacillus halodurans c-125} (A:80-146) Probab=21.87 E-value=38 Score=12.44 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=22.2 Q ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCC Q ss_conf 67765641079824201100123455751210000367321221112 Q gi|254780425|r 303 LKKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASS 349 (518) Q Consensus 303 ~~~l~~~~~~~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y 349 (518) ...+.+.+.++..-+.+.+.....++. .+.++++.||||..+..| T Consensus 21 Vd~~~~~l~~~G~~i~~~p~~~~~~~~--~~~~~~~~DPDG~~iEi~ 65 (67) T 3ct8_A 21 VDELTQKLKERGDPILYEDRHPFAGGP--NHYAVFCEDPNRIKVEIV 65 (67) T ss_dssp HHHHHHHHHHHTCCBCCTTTTTCTTCT--TCCEEEEECTTCCEEEEE T ss_pred HHHHHHHHHHCCCEEECCCCCCCCCCC--CEEEEEEECCCCCEEEEE T ss_conf 899988898759778359987626899--679999998999999999 No 24 >>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} (B:56-304) Probab=21.01 E-value=40 Score=12.33 Aligned_cols=10 Identities=10% Similarity=0.026 Sum_probs=4.6 Q ss_pred CCEEEECCCC Q ss_conf 6189831210 Q gi|254780425|r 282 PVIIVWAYLP 291 (518) Q Consensus 282 ~dLiVWPEsa 291 (518) .-+|..-++. T Consensus 99 lPiv~l~dt~ 108 (249) T 2f9y_B 99 CPLICFSASG 108 (249) T ss_dssp CCEEEEEEES T ss_pred CCEEEEECCC T ss_conf 9769984577 No 25 >>2c5u_A RNA ligase, T4 RNA ligase 1; nucleotidyl transferase, ATP-binding; HET: APC; 2.21A {Bacteriophage T4} (A:102-199) Probab=20.78 E-value=33 Score=12.84 Aligned_cols=30 Identities=17% Similarity=0.450 Sum_probs=17.7 Q ss_pred CCCCCCCCCCCCCCEEEEE-------HHHHHCCCCHH Q ss_conf 3673212211125633422-------13310010000 Q gi|254780425|r 338 IINSKGEILASSNAKHLVP-------FAEYLPYRNIL 367 (518) Q Consensus 338 ~~~~~g~~~~~Y~K~~LVP-------FGEyiP~~~~~ 367 (518) ++.|+..++-.|++..|+= =|||+|+.++. T Consensus 60 ~~sp~nrIVv~Y~~~~L~LLa~R~~~tG~y~~~~el~ 96 (98) T 2c5u_A 60 FVAPTNRIVLAYQEXKIILLNVRENETGEYISYDDIY 96 (98) T ss_dssp EECTTSCSSSCCSSCEEEEEEEEETTTCCBCCHHHHH T ss_pred EECCCCCEECCCCCCCCEEEEEEECCCCCEEEHHHHH T ss_conf 9889984533678867122788985888488424422 Done!