Query gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 518 No_of_seqs 165 out of 2706 Neff 8.6 Searched_HMMs 23785 Date Mon May 30 11:18:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780425.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2dyu_A Formamidase; AMIF, CEK, 100.0 3.2E-35 1.3E-39 246.6 15.3 227 240-490 11-261 (334) 2 1uf5_A N-carbamyl-D-amino acid 100.0 3.3E-34 1.4E-38 240.0 16.1 243 241-495 2-281 (303) 3 2uxy_A Aliphatic amidase; nitr 100.0 1.7E-32 7E-37 228.9 15.5 232 237-492 7-263 (341) 4 3hkx_A Amidase; alpha-beta-BET 100.0 5.7E-32 2.4E-36 225.4 17.1 231 234-494 12-263 (283) 5 2vhh_A CG3027-PA; hydrolase; 2 100.0 1E-30 4.4E-35 217.2 15.3 232 241-492 71-348 (405) 6 3ivz_A Nitrilase; alpha-beta s 100.0 1.7E-29 7.1E-34 209.3 15.3 211 243-489 2-237 (262) 7 2e11_A Hydrolase; dimethylarse 100.0 1.4E-28 6E-33 203.3 12.0 218 242-492 3-246 (266) 8 1ems_A Nitfhit, NIT-fragIle hi 100.0 8.5E-28 3.6E-32 198.2 15.1 233 239-491 11-266 (440) 9 2w1v_A Nitrilase-2, nitrilase 100.0 8E-28 3.4E-32 198.4 14.8 226 241-490 2-249 (276) 10 1f89_A 32.5 kDa protein YLR351 99.9 1.3E-26 5.4E-31 190.5 16.4 233 238-489 6-264 (291) 11 3n05_A NH(3)-dependent NAD(+) 99.9 8.5E-24 3.6E-28 172.1 14.7 225 241-489 3-260 (590) 12 3dla_A Glutamine-dependent NAD 99.9 4.8E-21 2E-25 154.2 13.3 235 241-488 11-276 (680) 13 3ilv_A Glutamine-dependent NAD 99.8 8.7E-20 3.6E-24 146.0 15.1 233 241-489 4-265 (634) 14 3iav_A Propionyl-COA carboxyla 55.3 7.8 0.00033 16.0 5.2 17 452-468 484-500 (530) 15 2f9i_B Acetyl-coenzyme A carbo 53.0 8.4 0.00035 15.7 4.7 10 445-454 151-160 (285) 16 2bzr_A Propionyl-COA carboxyla 52.0 8.7 0.00037 15.6 5.2 18 451-468 501-518 (548) 17 1vrg_A Propionyl-COA carboxyla 46.8 11 0.00044 15.1 4.5 17 452-468 481-497 (527) 18 3ff6_A Acetyl-COA carboxylase 42.7 12 0.00051 14.7 5.4 36 421-456 460-501 (760) 19 1on3_A Methylmalonyl-COA carbo 41.9 12 0.00052 14.6 4.5 12 457-468 482-493 (523) 20 2obi_A PHGPX, GPX-4, phospholi 33.7 17 0.0007 13.8 3.2 13 337-349 154-166 (183) 21 1vp8_A Hypothetical protein AF 32.1 18 0.00074 13.6 2.5 10 399-408 139-148 (201) 22 1pix_A Glutaconyl-COA decarbox 29.1 20 0.00083 13.3 4.3 13 456-468 534-546 (587) 23 1t57_A Conserved protein MTH16 29.1 20 0.00083 13.3 2.5 10 399-408 145-154 (206) 24 1o8x_A Tryparedoxin, TRYX, TXN 24.3 7.7 0.00032 16.0 -1.2 31 335-365 111-144 (146) 25 1rv3_A Serine hydroxymethyltra 22.7 22 0.00091 13.0 0.9 31 277-312 189-219 (483) 26 2a7v_A Serine hydroxymethyltra 21.5 24 0.001 12.8 0.9 31 277-312 199-229 (490) 27 3gbx_A Serine hydroxymethyltra 20.4 26 0.0011 12.5 0.9 31 277-312 165-195 (420) No 1 >2dyu_A Formamidase; AMIF, CEK, catalytic triad, aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori 26695} PDB: 2dyv_A 2e2l_A 2e2k_A Probab=100.00 E-value=3.2e-35 Score=246.60 Aligned_cols=227 Identities=13% Similarity=0.065 Sum_probs=169.9 Q ss_pred CCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHH-----------HHHHHHHH Q ss_conf 5553210012442035-55433335789987543101334668618983121011000112-----------34667765 Q gi|254780425|r 240 KISPVIRIVQPGINPA-IKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQ-----------PSILKKIA 307 (518) Q Consensus 240 ~~~~~V~iVQpni~~~-~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~-----------~~~~~~l~ 307 (518) ..+++|++||.++++. .+.+.++..++..++.+.+ +++.+++|||||||.+++-+..+. ....+.+. T Consensus 11 ~~~~~Va~vQ~~v~~~~~~~d~~~n~~~i~~~i~~~-~A~~~gadLvVfPE~~~~Gy~~~~~~~~~~~~~~~~~~~~~l~ 89 (334) T 2dyu_A 11 IEGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHAT-KAGYPGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKETELYA 89 (334) T ss_dssp --CEEEEEECCBCCCCCSHHHHHHHHHHHHHHHHHH-HHHCTTEEEEECCTTTTTCCCTTTTTSGGGCBCSSSHHHHHHH T ss_pred CCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHH T ss_conf 743389999578677878899999999999999998-6056999899968786345883355658887768859999999 Q ss_pred HHHCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCC-CC Q ss_conf 64107982420110012345575121000036732122111256334221331001000012111001222210135-87 Q gi|254780425|r 308 SVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSS-DI 386 (518) Q Consensus 308 ~~~~~~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g-~~ 386 (518) +.++++...++++......+++.++|||+++++++|++..+|+|+| ||+|+.|+ .+| .. T Consensus 90 ~~a~~~~~~iv~g~~e~~~~~~~~~yNsa~vi~~~G~i~~~yrK~~--p~~~~~~~------------------~~g~~~ 149 (334) T 2dyu_A 90 KACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKYRKLF--PWNPIEPW------------------YPGDLG 149 (334) T ss_dssp HHHHHHTCEEEEEEEECCSSTTSCCEEEEEEECTTSCEEEEEECSS--CCTTTCCC------------------CCCCSC T ss_pred HHHHHCCEEEEEECCEECCCCCCCEEEEEEEECCCCEEEEEEECCC--CCCHHHCC------------------CCCCCC T ss_conf 9998779799963516414889837989999879973999994046--77601034------------------577788 Q ss_pred CCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC--- Q ss_conf 76200012200102221666558888512--6997799962775576762899999999999972991999855970--- Q gi|254780425|r 387 SPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGV--- 461 (518) Q Consensus 387 ~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~ntGi--- 461 (518) .+++....+.++|.+||||..||+..|.+ +||++|+++|| |... ...||..++|.||+||+.++|.|.++|. T Consensus 150 ~~v~~~~~G~kiG~~IC~D~~fpe~~r~~a~~GAdlil~~sa--~~~~-~~~~~~~~~rarA~en~~~vv~aN~~G~~~~ 226 (334) T 2dyu_A 150 MPVCEGPGGSKLAVCICHDGMIPELAREAAYKGCNVYIRISG--YSTQ-VNDQWILTNRSNAWHNLMYTVSVNLAGYDNV 226 (334) T ss_dssp CCCEECGGGCEEEEEEGGGGGCHHHHHHHHHTTCSEEEEEES--SCTT-SHHHHHHHHHHHHHHHTCEEEEEECSBSSSS T ss_pred CCEEECCCCCEEEEEEECCCCCHHHHHHHHHCCCCEEEECCC--CCCC-CHHHHHHHHHHHHHHCCCEEEEECCCCCCCC T ss_conf 735863688589999972643779999999889969996467--8997-3478999999999976975999877525799 Q ss_pred ------CEEECCCCEEEEECCCCCCEEEEEEECCC Q ss_conf ------46998998087773899827999996067 Q gi|254780425|r 462 ------SAFLDERGQIISSVYADRGASIDMHFQPK 490 (518) Q Consensus 462 ------S~~id~~G~i~~~~~~~~~~~l~~~v~~~ 490 (518) |++|||+|+++.+.+.++++++.+++-+. T Consensus 227 ~~~~G~S~Ii~p~G~vla~~~~~~e~i~~aeiDl~ 261 (334) T 2dyu_A 227 FYYFGEGQICNFDGTTLVQGHRNPWEIVTGEIYPK 261 (334) T ss_dssp CCCCCEEEEECTTSCEEEECCCCTTCEEEEEECHH T ss_pred CEEEEEEEEECCCCCEEEECCCCCCEEEEEEEEHH T ss_conf 27841039998998899980799988999998789 No 2 >1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A Probab=100.00 E-value=3.3e-34 Score=239.99 Aligned_cols=243 Identities=14% Similarity=0.148 Sum_probs=178.6 Q ss_pred CCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHH-----------------HHHH Q ss_conf 55321001244-20355543333578998754310133466861898312101100011-----------------2346 Q gi|254780425|r 241 ISPVIRIVQPG-INPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVD-----------------QPSI 302 (518) Q Consensus 241 ~~~~V~iVQpn-i~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~-----------------~~~~ 302 (518) .+++|++.|.+ +... .+++..++++.++.+. +.+.++|||||||.+++-+... .... T Consensus 2 ~~~~ia~~Q~~pi~~~--~~~~~~l~r~~~li~~---A~~~gadlvvfPE~~ltGy~~~~~~~~~~~~~~~~~~~~~~~~ 76 (303) T 1uf5_A 2 RQMILAVGQQGPIARA--ETREQVVVRLLDMLTK---AASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPV 76 (303) T ss_dssp CEEEEEEEEBCCCCTT--CCHHHHHHHHHHHHHH---HHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTT T ss_pred CEEEEEEECCCCCCCC--CCHHHHHHHHHHHHHH---HHHCCCCEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCHH T ss_conf 5799999846786898--6899999999999999---9988794999588951358702210387777666655058889 Q ss_pred HHHHHHHHCC-CCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCC Q ss_conf 6776564107-982420110012345575121000036732122111256334221331001000012111001222210 Q gi|254780425|r 303 LKKIASVLKI-NQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDY 381 (518) Q Consensus 303 ~~~l~~~~~~-~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~ 381 (518) .+.+.+.+++ +..+++|........++.++|||+++++++|+++.+|+|+||+|++||.|++.+...-. ..+ T Consensus 77 ~~~l~~~A~~~~i~v~~G~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~L~~~~e~~~~~~~~~~e~-------~~~ 149 (303) T 1uf5_A 77 VRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEK-------RYF 149 (303) T ss_dssp THHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHH-------HHC T ss_pred HHHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCEE-------EEE T ss_conf 9999999997597799853357650789808999999848986888762012799765434566320001-------256 Q ss_pred CCCCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCC-CC-----C-HHHHHHHHHHHHHHHCCCE Q ss_conf 1358776200012200102221666558888512--699779996277557-67-----6-2899999999999972991 Q gi|254780425|r 382 SSSDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGF-MG-----S-GTDHSFRYAQIQAVEIGLP 452 (518) Q Consensus 382 ~~g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf-~~-----s-~~~qH~~~a~~RAiE~~r~ 452 (518) .+++........++.++|.+||||..||+..|.+ +||+++++++|..+. .. . ...+|...+|.||+||+.+ T Consensus 150 ~~~~~~~~~~~~~~~~ig~~IC~D~~~pe~~r~la~~Ga~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~ 229 (303) T 1uf5_A 150 EPGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAW 229 (303) T ss_dssp CCCSSCSCEEEETTEEEEECCGGGGGCHHHHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHHHHHHHHHHHHHTCE T ss_pred ECCCCCCCEEEECCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCE T ss_conf 05887763799468478865434300669999999889929998157755456542200121002465677677455973 Q ss_pred EEEEECC---------CCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCH Q ss_conf 9998559---------704699899808777389982799999606768768 Q gi|254780425|r 453 LIRATNN---------GVSAFLDERGQIISSVYADRGASIDMHFQPKVRDSF 495 (518) Q Consensus 453 ~vra~nt---------GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~ 495 (518) ++++.++ |.|+++||+|+++++.+.++++++.+++.+..-... T Consensus 230 vv~~n~~g~~~~~~~~G~S~I~~p~G~vla~~~~~~e~il~a~iDl~~~~~~ 281 (303) T 1uf5_A 230 SAAAGKAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCREL 281 (303) T ss_dssp EEEEEBCEEETTEEECCCCEEECTTSCEEEECCSSSSEEEEEEEEGGGGHHH T ss_pred EEEECCCCCCCCCEECCCCEEEECCCCEEEECCCCCCEEEEEEECHHHHHHH T ss_conf 9996676877782263662999489999987689988899999858999999 No 3 >2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A Probab=100.00 E-value=1.7e-32 Score=228.89 Aligned_cols=232 Identities=9% Similarity=0.057 Sum_probs=165.5 Q ss_pred CCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHHHH-----------HHHH Q ss_conf 6555553210012442035-554333357899875431013346686189831210110001123-----------4667 Q gi|254780425|r 237 KFEKISPVIRIVQPGINPA-IKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQP-----------SILK 304 (518) Q Consensus 237 ~~~~~~~~V~iVQpni~~~-~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~~~-----------~~~~ 304 (518) ...+.+++|++||.++++- .+.+..+..++..++.+... +..+++|||||||.+++.+..+.. ...+ T Consensus 7 ~~~~~~v~Va~vQ~~~~~~~~~~~v~~N~~~i~~~i~~a~-~~~~GadLVVfPE~~l~Gy~~~~~~~~~~a~~~~g~~~~ 85 (341) T 2uxy_A 7 SSSNDTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMK-QGLPGMDLVVFPEYSLQGIMYDPAEMMETAVAIPGEETE 85 (341) T ss_dssp CCCTTEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHH-HHCTTEEEEECCTTTTTBCCCSHHHHHHHCBCSSSHHHH T ss_pred CCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH-HCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCHHHH T ss_conf 8899827999997677775888999999999999999997-269998899889983015898879999876657868999 Q ss_pred HHHHHHCCCCEE-EECCCC-CCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCC Q ss_conf 765641079824-201100-123455751210000367321221112563342213310010000121110012222101 Q gi|254780425|r 305 KIASVLKINQLL-IVGSMR-KELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYS 382 (518) Q Consensus 305 ~l~~~~~~~~~l-i~G~~~-~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~ 382 (518) .+.+.++++... +.|... ....+++.++||++++++++|++..+|+|.| ||+|+-+ +. T Consensus 86 ~l~~~a~~~~~~~v~~~~g~~~~~~~~~~~yNsa~li~~~G~i~~~yrK~~--p~~~~~~------------------~~ 145 (341) T 2uxy_A 86 IFSRACRKANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKII--PWCPIEG------------------WY 145 (341) T ss_dssp HHHHHHHHHTCEEEEEEEEECCTTTTSSCCEEEEEEECTTSCEEEEEECSS--CCTTTCC------------------CB T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECC--CCCCCEE------------------EC T ss_conf 999999976973786303533314799857999999918961998788546--6664303------------------22 Q ss_pred CCCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECC- Q ss_conf 358776200012200102221666558888512--69977999627755767628999999999999729919998559- Q gi|254780425|r 383 SSDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNN- 459 (518) Q Consensus 383 ~g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~nt- 459 (518) +|+........++.+++.+||||..||+..|.+ +||++++++|+ |. .+...||..++|.||+||+.+++.|..+ T Consensus 146 ~~g~~~~v~~~~g~kiG~~IC~D~~fPE~~r~la~~GAeiil~psa--~~-~~~~~~~~~~~~arA~eN~~~vv~aN~~G 222 (341) T 2uxy_A 146 PGGQTYVSEGPKGMKISLIIXDDGNYPEIWRDCAMKGAELIVRCQG--YM-YPAKDQQVMMAKAMAWANNCYVAVANAAG 222 (341) T ss_dssp CCCCCCCEECGGGCEEEEEEGGGGGSHHHHHHHHHTTCSEEEEEEC--CB-TTCHHHHHHHHHHHHHHHTCEEEEEECEE T ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCEEEEECCC--CC-CCCHHHHHHHHHHHHHHCCCEEEEEEEEC T ss_conf 6631011013458678864623212729999998659739998047--88-87378888689999998198399992141 Q ss_pred --------CCCEEECCCCEEEEECCCCCCEEEEEEECCCCC Q ss_conf --------704699899808777389982799999606768 Q gi|254780425|r 460 --------GVSAFLDERGQIISSVYADRGASIDMHFQPKVR 492 (518) Q Consensus 460 --------GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~ 492 (518) |-|++|||+|+++++.+.++++++.+++.+..- T Consensus 223 ~~~~~~~~G~S~Ii~p~G~vla~~~~~ee~i~~aeiDl~~i 263 (341) T 2uxy_A 223 FDGVYSYFGHSAIIGFDGRTLGECGEEEMGIQYAQLSLSQI 263 (341) T ss_dssp ECSSCEEECCCEEECTTSCEEEECCSCTTCEEEEEEEHHHH T ss_pred CCCCCEECCEEEEECCCCCEEEECCCCCCEEEEEEECHHHH T ss_conf 78995072225999999829887589998899999618999 No 4 >3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich, hydrolase; 1.66A {Nesterenkonia SP} Probab=100.00 E-value=5.7e-32 Score=225.40 Aligned_cols=231 Identities=16% Similarity=0.102 Sum_probs=168.2 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHH----------HHHHHH Q ss_conf 4566555553210012442035554333357899875431013346686189831210110001----------123466 Q gi|254780425|r 234 SSLKFEKISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIV----------DQPSIL 303 (518) Q Consensus 234 ~~~~~~~~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~----------~~~~~~ 303 (518) +........++|+++|.+..+. |.+..+++..++.++ +.+.++|||||||.+++-+.. ...... T Consensus 12 ~~~~~~~~~~ria~~Q~~~~~~---d~~~Nl~~i~~~i~~---A~~~gadlvv~PE~~~~Gy~~~~~~~~~~~~~~~~~~ 85 (283) T 3hkx_A 12 SGLVIRGSHMRIALMQHTARPL---DPQHNLDLIDDAAAR---ASEQGAQLLLTPELFGFGYVPSQICAQVSAEQVDAAR 85 (283) T ss_dssp CCSCCTTEEEEEEEEEBCCCTT---CHHHHHHHHHHHHHH---HHHTTCSEEECCTTGGGCSCHHHHHHHCCHHHHHHHH T ss_pred CCCEECCCCCEEEEEECCCCCC---CHHHHHHHHHHHHHH---HHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCHHH T ss_conf 2444348987899997889989---899999999999999---9988893999588864589857875312122148999 Q ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCC Q ss_conf 77656410798242011001234557512100003673212211125633422133100100001211100122221013 Q gi|254780425|r 304 KKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSS 383 (518) Q Consensus 304 ~~l~~~~~~~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~ 383 (518) +.+.++++++...|+++.... ++++++||++++++++|+++.+|+|+||.++.|.- .|.+ T Consensus 86 ~~l~~la~~~~i~iv~G~~~~--~~~~~~~nsa~li~~~G~iv~~y~K~~L~~~~E~~------------------~f~~ 145 (283) T 3hkx_A 86 SRLRGIARDRGIALVWSLPGP--EGPEQRGITAELADEHGEVLASYQKVQLYGPEEKA------------------AFVP 145 (283) T ss_dssp HHHHHHHHHTTSEEEECCBCS--SCTTTCCBEEEEECTTSCEEEEEECSSCCHHHHHH------------------HSCC T ss_pred HHHHHHHHHCCCEEEECCEEC--CCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCC------------------EEEC T ss_conf 999999997598799440320--37731258999993699589999750444444431------------------2303 Q ss_pred CCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 58776200012200102221666558888512--6997799962775576762899999999999972991999855970 Q gi|254780425|r 384 SDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGV 461 (518) Q Consensus 384 g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~ntGi 461 (518) |+....+...++.++|.+||||..||+..|.+ +++++++++|+ |..++. .+|..+++.||+|||++++.|..+|. T Consensus 146 G~~~~~v~~~~~~kig~~IC~D~~fpe~~r~la~~ga~iil~ps~--~~~~~~-~~~~~~~~arA~en~~~vv~~N~~G~ 222 (283) T 3hkx_A 146 GEQPPPVLSWGGRQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTA--LAGDET-SVPGILLPARAVENGITLAYANHCGP 222 (283) T ss_dssp CCSCCCEEEETTEEEEECCGGGGGSHHHHHHHHHTTCSEEEEECC--CBSCCT-HHHHTHHHHHHHHHTCEEEEECBEEE T ss_pred CCCCCCCCEEECCEECCEECCCCCCCHHHHHHHHCCCCEEEECCC--CCCCCC-CCCHHHHHHHHHHCCCEEEEEEEECC T ss_conf 554553101101101230214535839999976357619998546--899864-22201678899855865999941016 Q ss_pred ---------CEEECCCCEEEEECCCCCCEEEEEEECCCCCCC Q ss_conf ---------469989980877738998279999960676876 Q gi|254780425|r 462 ---------SAFLDERGQIISSVYADRGASIDMHFQPKVRDS 494 (518) Q Consensus 462 ---------S~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T 494 (518) |+++||+|+++++.+ ++++++..++++...++ T Consensus 223 ~~~~~~~G~S~i~~p~G~ila~~~-~~e~~l~~did~~~~~~ 263 (283) T 3hkx_A 223 EGGLVFDGGSVVVGPAGQPLGELG-VEPGLLVVDLPDQSQDA 263 (283) T ss_dssp ETTEEEECCCEEECTTSCEEEECC-SSCEEEEEEEEC----- T ss_pred CCCEEEECCEEEECCCCCEEEECC-CCCEEEEEEECHHHHHH T ss_conf 899077131799939997999858-99879999975999999 No 5 >2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A Probab=99.97 E-value=1e-30 Score=217.17 Aligned_cols=232 Identities=13% Similarity=0.076 Sum_probs=169.7 Q ss_pred CCCCCCCCCCCCCHH----HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCH---H------------HHHH Q ss_conf 553210012442035----55433335789987543101334668618983121011000---1------------1234 Q gi|254780425|r 241 ISPVIRIVQPGINPA----IKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSI---V------------DQPS 301 (518) Q Consensus 241 ~~~~V~iVQpni~~~----~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~---~------------~~~~ 301 (518) ..++|++||.++... ...+.+...++..++.+ ++++.++|||++||..++-+. . .+.. T Consensus 71 r~VrVa~vQ~~i~~~~t~pv~~~~~a~~~ri~~lI~---~Aa~~GadlVvfPEl~itGY~~~~~~~~~~~~~ae~~~~gp 147 (405) T 2vhh_A 71 RIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIK---AAAEAGCNIVCTQEAWTMPFAFCTREKFPWCEFAEEAENGP 147 (405) T ss_dssp CEEEEEEEECCCCSCSSSCHHHHHHHHHHHHHHHHH---HHHHTTCSEEECCTTTTSCSCC---------CCCBCTTTSH T ss_pred CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH---HHHHCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCH T ss_conf 558999984467788878702348999999999999---99986991998640026699864133444787643527998 Q ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCC Q ss_conf 66776564107982420110012345575121000036732122111256334221331001000012111001222210 Q gi|254780425|r 302 ILKKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDY 381 (518) Q Consensus 302 ~~~~l~~~~~~~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~ 381 (518) ..+.+.+++++++..|+++....+.+.+.++|||+++++++|+++.+|+|+||.+++++-. ..-+ T Consensus 148 ~~~~l~~lAk~~~i~Iv~G~~Er~~~~g~~lyNsa~vi~p~G~il~~yrK~hL~~~~~~~E---------------~~~~ 212 (405) T 2vhh_A 148 TTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNE---------------STYY 212 (405) T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEETTTTTEEEEEEEEECTTSCEEEEEECSCCCC------------------------- T ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCC---------------EEEE T ss_conf 9999999999829889997578652789747888999836994887887763156774342---------------2322 Q ss_pred CCCCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECC Q ss_conf 1358776200012200102221666558888512--69977999627755767628999999999999729919998559 Q gi|254780425|r 382 SSSDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNN 459 (518) Q Consensus 382 ~~g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~nt 459 (518) .+|+........+..++|.+||||..||+..|.+ +|+++++++|+ |.+..+..++...++.||+||+.+++.+... T Consensus 213 ~~G~~~~~v~~t~~griGv~IC~D~~~Pe~~r~la~~GAdii~~Ps~--~~~~~~~~~~~~~~~~rAieN~~~Vv~aN~v 290 (405) T 2vhh_A 213 MEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSA--TIGRLSEPLWSIEARNAAIANSYFTVPINRV 290 (405) T ss_dssp CCCCSCCCEEEETTEEEEECCGGGGGCHHHHHHHHHTTCSEEEEEEC--CBCTTTHHHHHHHHHHHHHHHTSEEEEEECE T ss_pred CCCCCCCCEEECCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEECCC--CCCCHHHHHHHHHHHHHHHHCCCEEEEEEEC T ss_conf 14888767697489469987644555516765642189819995687--7873157899989999999809769998121 Q ss_pred -------------------------CCCEEECCCCEEEEECCCCCCEEEEEEECCCCC Q ss_conf -------------------------704699899808777389982799999606768 Q gi|254780425|r 460 -------------------------GVSAFLDERGQIISSVYADRGASIDMHFQPKVR 492 (518) Q Consensus 460 -------------------------GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~ 492 (518) |-|+++||+|+++++.+.++++++++++-+..- T Consensus 291 G~e~~~~~~~~~~~~~~~~~~~~f~G~S~Iv~P~G~vla~~~~~~EgilvadiDL~~~ 348 (405) T 2vhh_A 291 GTEQFPNEYTSGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLC 348 (405) T ss_dssp ECCCCC-----------------EECCCCCBCTTSCBCCCCCSSSCEEEEEEEETTHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEECCCCCCEEEEEEEEHHHH T ss_conf 1267765222333333566787143405998389878860489988899999728999 No 6 >3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi GE5} PDB: 3iw3_A 1j31_A Probab=99.97 E-value=1.7e-29 Score=209.29 Aligned_cols=211 Identities=13% Similarity=0.083 Sum_probs=154.2 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHH-------------HHHHHHHHHHH Q ss_conf 32100124420355543333578998754310133466861898312101100011-------------23466776564 Q gi|254780425|r 243 PVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVD-------------QPSILKKIASV 309 (518) Q Consensus 243 ~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~-------------~~~~~~~l~~~ 309 (518) ++|+++|.+.... |.+..+++..++.+. +.+.++|||||||.+++-+... +....+.+.+. T Consensus 2 ~kva~~Q~~~~~~---d~~~N~~~~~~~i~~---A~~~gadliv~PE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~l~~~ 75 (262) T 3ivz_A 2 VKVAYVQMNPQIL---EPDKNYSKAEKLIKE---ASKQGAQLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDV 75 (262) T ss_dssp CEEEEEECCCCTT---CHHHHHHHHHHHHHH---HHHTTCSEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHH T ss_pred EEEEEEECCCCCC---CHHHHHHHHHHHHHH---HHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 6999995888779---999999999999999---9988796999688753578613367887666505665579999999 Q ss_pred HCCCCEE-EECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 1079824-201100123455751210000367321221112563342213310010000121110012222101358776 Q gi|254780425|r 310 LKINQLL-IVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISP 388 (518) Q Consensus 310 ~~~~~~l-i~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~ 388 (518) ++++... +.|.... ++.++||+++++++ |++..+|+|+||++..|+ .+.+|+... T Consensus 76 a~~~~~~i~~g~~~~----~~~~~~n~~~~~~~-g~~~~~y~K~~l~~~e~~-------------------~~~~G~~~~ 131 (262) T 3ivz_A 76 ARDTGVYIVAGTAEK----DGDVLYNSAVVVGP-RGFIGKYRKIHLFYREKF-------------------FFEPGDLGF 131 (262) T ss_dssp HHHHCCEEEEEEEEE----ETTEEEEEEEEEET-TEEEEEEECSSCCGGGGG-------------------TCBCCCSCS T ss_pred HHHCCEEEEEEEEEE----CCCCCCCCEEEECC-CCEEEEEEECCCCCCCCE-------------------EECCCCCCC T ss_conf 998190799644574----39800111299879-977988963035777514-------------------567999874 Q ss_pred CEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC-------- Q ss_conf 200012200102221666558888512--6997799962775576762899999999999972991999855-------- Q gi|254780425|r 389 LLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATN-------- 458 (518) Q Consensus 389 ~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~n-------- 458 (518) .....++.++|.+||||..||+..|+. +|+++++++||+.+ + + +..+.+.||+||+.+++.+.. T Consensus 132 ~v~~~~~~~ig~~IC~D~~fpe~~r~~~~~Gadli~~ps~~~~---~--~-~~~~~~~rA~en~~~vv~an~~G~~~~~~ 205 (262) T 3ivz_A 132 RVFDLGFMKVGVMICFDWFFPESARTLALKGADVIAHPANLVM---P--Y-APRAMPIRALENKVYTVTADRVGEERGLK 205 (262) T ss_dssp CEEECSSCEEEECCGGGGGSHHHHHHHHHTTCSEEEEEECCCS---S--C-HHHHHHHHHHHHTCEEEEEECCSEETTEE T ss_pred EEEEECCEEEEEEECCCCCCCHHHHHHHHCCCCEEEECCCCCC---C--C-CCCHHHHHHHHCCCEEEEEECCCCCCCCC T ss_conf 5899699089999624535848999998729967883245667---5--3-32057789986696499982044358866 Q ss_pred -CCCCEEECCCCEEEEECCCCCCEEEEEEECC Q ss_conf -9704699899808777389982799999606 Q gi|254780425|r 459 -NGVSAFLDERGQIISSVYADRGASIDMHFQP 489 (518) Q Consensus 459 -tGiS~~id~~G~i~~~~~~~~~~~l~~~v~~ 489 (518) +|.|+++||+|+++++.+.++++++.+++.+ T Consensus 206 ~~G~S~i~~p~G~ila~~~~~~e~i~~adidl 237 (262) T 3ivz_A 206 FIGKSLIASPKAEVLSMASETEEEVGVAEIDL 237 (262) T ss_dssp CCCCCEEECTTSCEEEECCSSCCEEEEEECCH T ss_pred CCCCCEEEECCCCEEEECCCCCCEEEEEEEEH T ss_conf 65776899599989987589988899999768 No 7 >2e11_A Hydrolase; dimethylarsenic inhibitor complex, cacodylate; 1.73A {Xanthomonas campestris PV} Probab=99.96 E-value=1.4e-28 Score=203.25 Aligned_cols=218 Identities=14% Similarity=0.051 Sum_probs=154.1 Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHH--------HHHHHHHHHHHHCCC Q ss_conf 532100124420355543333578998754310133466861898312101100011--------234667765641079 Q gi|254780425|r 242 SPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVD--------QPSILKKIASVLKIN 313 (518) Q Consensus 242 ~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~--------~~~~~~~l~~~~~~~ 313 (518) +++|+++|.|+...+ .++.+++..++.+. ...++|||||||.+++-+..+ .....+.+.+.++++ T Consensus 3 ~~kvalvQ~~~~~~d---~~~Nl~~i~~~i~~----a~~~~dlvv~PE~~ltgy~~~~~~~~~~~~~~~~~~l~~~a~~~ 75 (266) T 2e11_A 3 DLRISLVQGSTRWHD---PAGNRDYYGALLEP----LAGQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAARL 75 (266) T ss_dssp CEEEEEEECCCCTTC---HHHHHHHHHHHHGG----GTTTCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHHHH T ss_pred CEEEEEECCCCCCCC---HHHHHHHHHHHHHH----HHCCCCEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC T ss_conf 509999918899869---99999999999999----73899899968874257971245542303676999999999986 Q ss_pred CEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEC Q ss_conf 82420110012345575121000036732122111256334221331001000012111001222210135877620001 Q gi|254780425|r 314 QLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISPLLGLS 393 (518) Q Consensus 314 ~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~ 393 (518) +..|+++..... ++++|||+++++++|++ ..|+|+||.|++|.- ..+.+|+..+++.. T Consensus 76 ~i~i~~g~~~~~---~~~~yNs~~~i~~~G~i-~~y~K~~l~~~~~~~-----------------~~~~~G~~~~v~~~- 133 (266) T 2e11_A 76 GAAITGSVQLRT---EHGVFNRLLWATPDGAL-QYYDKRHLFRFGNEH-----------------LRYAAGRERLCVEW- 133 (266) T ss_dssp TSEEEEEEEEEE---TTEEEEEEEEECTTSCE-EEEECSSCCGGGTTT-----------------TTSBCCCSCCCEEE- T ss_pred CCEEEEEEEEEC---CCEEEEEEEEECCCCCE-EEEEEEECCCCCCEE-----------------EEECCCCCCEEEEE- T ss_conf 965998789964---99378889998599738-899885136754215-----------------67628984166775- Q ss_pred CCCEEECCCCHHHHHHHHHHCCC--------CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC---- Q ss_conf 22001022216665588885126--------997799962775576762899999999999972991999855970---- Q gi|254780425|r 394 EKLRLYPLLFSDALFHQDINNLE--------NVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGV---- 461 (518) Q Consensus 394 ~~~~~~~~ICyE~~f~~~~r~~~--------~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~ntGi---- 461 (518) ++.++|.+||||..||+..|... +++++++++ .| ++..+.++..+.+.||+||+.++++|.++|. T Consensus 134 ~~~kig~~IC~D~~fpe~~r~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~arA~en~~~vv~~N~~G~~~~~ 210 (266) T 2e11_A 134 KGWRINPQVCYDLRFPVFCRNRFDVERPGQLDFDLQLFVA--NW-PSARAYAWKTLLRARAIENLCFVAAVNRVGVDGNQ 210 (266) T ss_dssp TTEEEEEEEGGGGGCTTTTCCCBSSSSTTSBSCSEEEEEE--CC-CGGGHHHHHHHHHHHHHHTTSEEEEEECEEECTTS T ss_pred CCCCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECC--CC-CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC T ss_conf 2641011141475584899988876421100543243000--14-77651134327788998759957985034246986 Q ss_pred ------CEEECCCCEEEEECCCCCCEEEEEEECCCCC Q ss_conf ------4699899808777389982799999606768 Q gi|254780425|r 462 ------SAFLDERGQIISSVYADRGASIDMHFQPKVR 492 (518) Q Consensus 462 ------S~~id~~G~i~~~~~~~~~~~l~~~v~~~~~ 492 (518) |+++||+|+++++++. +++++.+++.+..- T Consensus 211 ~~~~G~S~Iv~p~G~ila~~~~-~e~ii~a~iD~~~~ 246 (266) T 2e11_A 211 LHYAGDSAVIDFLGQPQVEIRE-QEQVVTTTISAAAL 246 (266) T ss_dssp CEEEEEEEEECTTSCEEEEEES-SCEEEEEEECHHHH T ss_pred CEECCCEEEEECCCCEEEECCC-CCEEEEEEECHHHH T ss_conf 5462654999199969998699-98699999869999 No 8 >1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1 Probab=99.96 E-value=8.5e-28 Score=198.19 Aligned_cols=233 Identities=16% Similarity=0.103 Sum_probs=160.5 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC-CCCCHHH---------HHHHHHHHHH Q ss_conf 55553210012442035554333357899875431013346686189831210-1100011---------2346677656 Q gi|254780425|r 239 EKISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLP-FPFSIVD---------QPSILKKIAS 308 (518) Q Consensus 239 ~~~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa-~p~~~~~---------~~~~~~~l~~ 308 (518) .....+|+++|.+..+ |.+..+++..++.+. +.+.++||||+||.. ++.+..+ +....+.+.+ T Consensus 11 ~~~~~rVA~~Q~~~~~----d~~~Nl~~i~~~i~~---Aa~~gadlivfPEl~~~~g~~~~~~~~~a~~~~~~~~~~l~~ 83 (440) T 1ems_A 11 ATGRHFIAVCQMTSDN----DLEKNFQAAKNMIER---AGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKYRE 83 (440) T ss_dssp CCSEEEEEEECBCCCS----CHHHHHHHHHHHHHH---HHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCEEEEEEECCCCC----CHHHHHHHHHHHHHH---HHHCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHH T ss_conf 6558489999777888----999999999999999---998859699978674020879678775433079599999999 Q ss_pred HHCCCC-EEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 410798-2420110012345575121000036732122111256334221331001000012111001222210135877 Q gi|254780425|r 309 VLKINQ-LLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDIS 387 (518) Q Consensus 309 ~~~~~~-~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~ 387 (518) .++++. .+++|.....+.+++.++||++++++++|++..+|+|+||.+++++-+.+ +........+|... T Consensus 84 ~A~~~~i~Iv~G~~~~~~~~~~~~~yNs~~~i~~~G~i~~~yrK~hL~~~~~~~~~~---------~~e~~~~~~~g~~~ 154 (440) T 1ems_A 84 LARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVR---------LMESEFSKAGTEMI 154 (440) T ss_dssp HHHHTTCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEE---------EEGGGTCCCCCSCC T ss_pred HHHHHCCEEEECCEEEECCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCE---------EEEEEEECCCCCCC T ss_conf 999739999981058743677882678899851787654541058503545788630---------23432000476443 Q ss_pred CCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC---- Q ss_conf 6200012200102221666558888512--6997799962775576762899999999999972991999855970---- Q gi|254780425|r 388 PLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGV---- 461 (518) Q Consensus 388 ~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~ntGi---- 461 (518) +++. .+..++|.+||||..||+..|.+ ++++++++++. |....+..+...+.|.||+||+.+++.|+++|. T Consensus 155 ~v~~-~~~gkiG~lIC~D~~fPe~~r~la~~ga~ii~~p~a--~~~~~~~~~~~~~~~aRA~en~~~vv~aN~~G~~~~~ 231 (440) T 1ems_A 155 PPVD-TPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSA--FTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHNPK 231 (440) T ss_dssp CCEE-ETTEEECCCCGGGGGCHHHHHHHHHTTCSEEECCBC--CCHHHHHHHHHHHHHHHHHHHTCEEEECBBEEEEETT T ss_pred EEEE-CCCCCCCCEEEECCCCHHHHHHHHHCCCEEEEEECC--CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCC T ss_conf 2686-178400204541457839999998749808998424--5788666899999999999769839999874256998 Q ss_pred ------CEEECCCCEEEEECCCCCCEEEEEEECCCC Q ss_conf ------469989980877738998279999960676 Q gi|254780425|r 462 ------SAFLDERGQIISSVYADRGASIDMHFQPKV 491 (518) Q Consensus 462 ------S~~id~~G~i~~~~~~~~~~~l~~~v~~~~ 491 (518) |+++||+|+|+++.+. +++++.+++.+.. T Consensus 232 ~~~~G~S~Iv~P~G~vla~~~~-~e~il~adiDl~~ 266 (440) T 1ems_A 232 RQSYGHSMVVDPWGAVVAQCSE-RVDMCFAEIDLSY 266 (440) T ss_dssp EEEECCCEEECTTSCEEEECCS-SSCEEEEEEEHHH T ss_pred CEEEEEEEEECCCCCEEEECCC-CCEEEEEEECHHH T ss_conf 7773115999189858887799-9829999971999 No 9 >2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} Probab=99.96 E-value=8e-28 Score=198.35 Aligned_cols=226 Identities=15% Similarity=0.103 Sum_probs=162.1 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHH---------HHHHHHHHHHHHC Q ss_conf 5532100124420355543333578998754310133466861898312101100011---------2346677656410 Q gi|254780425|r 241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVD---------QPSILKKIASVLK 311 (518) Q Consensus 241 ~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~---------~~~~~~~l~~~~~ 311 (518) ++++|+++|.|+.. +.++.+++..++.+. +.+.++|||||||.+++-+..+ .....+.+.+.++ T Consensus 2 ~~~kiAl~Q~~~~~----~~~~N~~~~~~~i~~---A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~l~~~A~ 74 (276) T 2w1v_A 2 STFRLALIQLQVSS----IKSDNLTRACSLVRE---AAKQGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAK 74 (276) T ss_dssp CEEEEEEEECCCCS----CHHHHHHHHHHHHHH---HHHTTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHH T ss_pred CCEEEEEEECCCCC----CHHHHHHHHHHHHHH---HHHCCCEEEECCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 97599999785899----999999999999999---99883969998878646898789998777678999999999998 Q ss_pred CCC-EEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCE Q ss_conf 798-2420110012345575121000036732122111256334221331001000012111001222210135877620 Q gi|254780425|r 312 INQ-LLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISPLL 390 (518) Q Consensus 312 ~~~-~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~~~ 390 (518) ++. .+++|+...+ +++++||++++++++|++..+|+|+++.+...+... .+.....+.+|+..+++ T Consensus 75 ~~~i~iv~G~~~~~---~~~~~yNs~~~i~~~g~~~~~~kk~~~~~~~~~~~~----------~~~~~~~~~~G~~~~v~ 141 (276) T 2w1v_A 75 ESSIYLIGGSIPEE---DAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKI----------TFQESKTLSPGDSFSTF 141 (276) T ss_dssp HHTSEEECCCEEEE---ETTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTE----------EEEGGGTCCCCCCCCEE T ss_pred HCCCEEEEEEEEEC---CCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCC----------CCCCCCCCCCCCCCCCC T ss_conf 66987999653120---158630132220688752026641134665454321----------12233556799853322 Q ss_pred EECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECC--------- Q ss_conf 0012200102221666558888512--69977999627755767628999999999999729919998559--------- Q gi|254780425|r 391 GLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNN--------- 459 (518) Q Consensus 391 ~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~nt--------- 459 (518) .. ++.++|.+||||..||+..|.+ +++++++++++ |....++.||....+.||+||+.++|.|+.. T Consensus 142 ~~-~~~~~g~~IC~D~~~pe~~r~l~~~g~~ii~~~~a--~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~~~~~~~ 218 (276) T 2w1v_A 142 DT-PYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGA--FNLTTGPAHWELLQRARAVDNQVYVATASPARDDKASYVA 218 (276) T ss_dssp EC-SSCEEEECCGGGGGCHHHHHHHHHTTEEEEEEECC--CCTTHHHHHHHHHHHHHHHHHTCEEEEECCCCCTTSSSCC T ss_pred CC-CCCEEEEEECCCCCCHHHHHHHHHCCCCEEEECCC--CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEE T ss_conf 35-65324236423322759999999869987972453--4577526777668889998659669997255468888777 Q ss_pred -CCCEEECCCCEEEEECCCCCCEEEEEEECCC Q ss_conf -7046998998087773899827999996067 Q gi|254780425|r 460 -GVSAFLDERGQIISSVYADRGASIDMHFQPK 490 (518) Q Consensus 460 -GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~ 490 (518) |-|+++||+|+++++.+. +++++.+++.+. T Consensus 219 ~G~S~I~~p~G~il~~~~~-~e~~~~~~iD~~ 249 (276) T 2w1v_A 219 WGHSTVVDPWGQVLTKAGT-EETILYSDIDLK 249 (276) T ss_dssp CCCCEEECTTSCEEEECCS-SSEEEEEEEEHH T ss_pred CCCEEEECCCCCEEEECCC-CCEEEEEEECHH T ss_conf 6761998799968863699-885999998789 No 10 >1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1 Probab=99.95 E-value=1.3e-26 Score=190.49 Aligned_cols=233 Identities=14% Similarity=0.097 Sum_probs=161.1 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHH-------------HHHHHH Q ss_conf 5555532100124420355543333578998754310133466861898312101100011-------------234667 Q gi|254780425|r 238 FEKISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVD-------------QPSILK 304 (518) Q Consensus 238 ~~~~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~-------------~~~~~~ 304 (518) .-+.+++|+++|.|..+.+ .+..+++..++.+.+.+ ...++|||||||.+++-+..+ .....+ T Consensus 6 ~~~~~~kiAl~Q~~~~~~d---~~~N~~~i~~~i~~A~~-~~~gadlvvfPE~~ltgy~~~~~~~~~~~~~~~~~~~~~~ 81 (291) T 1f89_A 6 ILSQKIKVALVQLSGSSPD---KMANLQRAATFIERAMK-EQPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQ 81 (291) T ss_dssp SBSSCEEEEEEECCCCCSC---HHHHHHHHHHHHHHHHH-HCTTEEEEECCTTTTSCSCHHHHHHHTTBCCSSSCCHHHH T ss_pred HHHCCCEEEEEECCCCCCC---HHHHHHHHHHHHHHHHH-CCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCHHHH T ss_conf 2006756999957588779---99999999999999984-4998989987786557887356788898733248979999 Q ss_pred HHHHHHCCCC-EEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCC Q ss_conf 7656410798-242011001234557512100003673212211125633422133100100001211100122221013 Q gi|254780425|r 305 KIASVLKINQ-LLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSS 383 (518) Q Consensus 305 ~l~~~~~~~~-~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~ 383 (518) .+.+.++++. .++.|..... ..++.++|||+++++++|+++.+|.|+++-+..+.... .+ .....+.+ T Consensus 82 ~l~~~A~~~~~~ii~G~~~~~-~~~~~~~yNs~~~i~~~G~i~~~~~k~~~~~~~~~~~~--~~--------~e~~~~~~ 150 (291) T 1f89_A 82 FLSNLANKFKIILVGGTIPEL-DPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGI--SF--------HESETLSP 150 (291) T ss_dssp HHHHHHHHSSCEEECCCEEEE-CTTTCCEEEEEEEECTTSCEEEEEECCCCC--------------------HHHHSCCC T ss_pred HHHHHHHHHCEEEEEEEEEEE-CCCCCEEEEEEEEECCCCCCCEEECCCCCCCCCCCCCC--CC--------CCCCEECC T ss_conf 999999980929998013301-07898588987564456762013012223322466654--43--------44412137 Q ss_pred CCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECC-- Q ss_conf 58776200012200102221666558888512--69977999627755767628999999999999729919998559-- Q gi|254780425|r 384 SDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNN-- 459 (518) Q Consensus 384 g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~nt-- 459 (518) ++...+. ..++.+++.+||||..+|+..|.+ ++++++++.++..+ .+.+.++..+.+.||.||+.+++.|++. T Consensus 151 ~~~~~v~-~~~~~~~g~~iC~d~~~p~~~~~l~~~~~~li~~~~~~~~--~~~~~~~~~~~~~~A~~~~~~vv~~n~~g~ 227 (291) T 1f89_A 151 GEKSTTI-DTKYGKFGVGICYDMRFPELAMLSARKGAFAMIYPSAFNT--VTGPLHWHLLARSRAVDNQVYVMLCSPARN 227 (291) T ss_dssp CCCCEEE-EETTEEEEECCGGGGGCHHHHHHHHHTTEEEEEEECCCBT--THHHHHHHHHHHHHHHHHTSEEEEECCCCC T ss_pred CCCCCCC-CCCCCCCCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCC--CCCHHHHHHHHHHHHHHHCCCEEEECCCCC T ss_conf 7310111-2576532433642445748999987558716884244666--545245554799999980886899646557 Q ss_pred --------CCCEEECCCCEEEEECCCCCCEEEEEEECC Q ss_conf --------704699899808777389982799999606 Q gi|254780425|r 460 --------GVSAFLDERGQIISSVYADRGASIDMHFQP 489 (518) Q Consensus 460 --------GiS~~id~~G~i~~~~~~~~~~~l~~~v~~ 489 (518) |-|+++||+|+++++.+. +++++.+++-+ T Consensus 228 ~~~~~~~~G~S~Ii~p~G~vla~~~~-~e~il~a~iD~ 264 (291) T 1f89_A 228 LQSSYHAYGHSIVVDPRGKIVAEAGE-GEEIIYAELDP 264 (291) T ss_dssp TTSSSCBCCCCEEECTTSCEEEECCS-SSEEEEEEECH T ss_pred CCCCCEEEEEEEEECCCCCEEEECCC-CCEEEEEEECH T ss_conf 78886774446998799978876799-98699999728 No 11 >3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Probab=99.91 E-value=8.5e-24 Score=172.13 Aligned_cols=225 Identities=13% Similarity=0.155 Sum_probs=155.7 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHH----HHHH-------HHHHHHHH Q ss_conf 553210012442035554333357899875431013346686189831210110001----1234-------66776564 Q gi|254780425|r 241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIV----DQPS-------ILKKIASV 309 (518) Q Consensus 241 ~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~----~~~~-------~~~~l~~~ 309 (518) ..++|+++|.|.-.. |.+...++..++.+ ++.+.++||||+||.+++-+.- ..+. ..+.+.+. T Consensus 3 ~~mKIAlaQ~n~~~G---D~~~N~~ki~~~i~---~A~~~GAdLvVfPEl~LtGY~~~Dl~~~~~f~~~~~~~l~~la~~ 76 (590) T 3n05_A 3 LQLRLALNQIDSTVG---DIAGNAEAILRWTR---HSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAAR 76 (590) T ss_dssp EEEEEEEEECCCCTT---CHHHHHHHHHHHHH---HHHTTTCSEEECCTTTTTCSCCGGGGGCHHHHHHHHHHHHHHHHH T ss_pred CCCEEEEEECCCCCC---CHHHHHHHHHHHHH---HHHHCCCCEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 657898997899867---69999999999999---999779959998888523588566630766899999999999999 Q ss_pred HC----CCCEEEECCCCCCCC------CCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCC Q ss_conf 10----798242011001234------55751210000367321221112563342213310010000121110012222 Q gi|254780425|r 310 LK----INQLLIVGSMRKELV------DGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPL 379 (518) Q Consensus 310 ~~----~~~~li~G~~~~~~~------~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~ 379 (518) .. .+.++++|....... ..+.++||++++++ +|++..+|+|+||.+++++-.-+ T Consensus 77 ~~~~~~~~i~vivG~~~~~~~~~~~~~~~~g~lyNsa~vi~-~G~i~~~y~K~~Lp~~~~~~E~r--------------- 140 (590) T 3n05_A 77 LAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKHHLPNYGVFDEFR--------------- 140 (590) T ss_dssp HHHTTCTTSCEEEEEEEECSSCBTTTTBCTTCEEEEEEEEE-TTEEEEEEECCCCCSSSSCCHHH--------------- T ss_pred HHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEE-CCEEEEEEEEEECCCCCCCEEEE--------------- T ss_conf 76533588499996245036765444566782677999998-99799999635057874100454--------------- Q ss_pred CCCCCCCCCCEEECCCCEEECCCCHHHHHHHHH-HC--CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE Q ss_conf 101358776200012200102221666558888-51--269977999627755767628999999999999729919998 Q gi|254780425|r 380 DYSSSDISPLLGLSEKLRLYPLLFSDALFHQDI-NN--LENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRA 456 (518) Q Consensus 380 ~~~~g~~~~~~~~~~~~~~~~~ICyE~~f~~~~-r~--~~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra 456 (518) .|.+|+..+++. .++.++|..||||..+|+.. +. ..+++++++++...+. .....++..+.+.||.|++.+++.+ T Consensus 141 ~f~~G~~~~v~~-~~g~riGv~IC~D~w~pe~~~~~l~~~ga~lii~~sas~~~-~~k~~~r~~~~~~ra~~~~~~vv~~ 218 (590) T 3n05_A 141 YFVPGDTMPIVR-LHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYE-RDKDDTRLELVRKRAQEAGCTTAYL 218 (590) T ss_dssp HCCCCCEEEEEE-ETTEEEEEEEGGGGGSTTSHHHHHHHTTCSEEEEEECCBCC-CCSSCHHHHHHHHHHHHHTSEEEEE T ss_pred ECCCCCCCCEEE-ECCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHCC-CCCHHHHHHHHHHHHHHCCCCEEEE T ss_conf 206998664145-36847740035133110568999985464544576621102-5738999999999998529853521 Q ss_pred EC---------CCCCEEECCCCEEEEECCCCCCEEEEEEECC Q ss_conf 55---------9704699899808777389982799999606 Q gi|254780425|r 457 TN---------NGVSAFLDERGQIISSVYADRGASIDMHFQP 489 (518) Q Consensus 457 ~n---------tGiS~~id~~G~i~~~~~~~~~~~l~~~v~~ 489 (518) .. .|-|.+|||+|+++.+.+.++++++..++.+ T Consensus 219 N~vG~~~~~vf~G~S~Ii~p~G~ila~~~~f~E~i~~aDiDl 260 (590) T 3n05_A 219 AMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDL 260 (590) T ss_dssp ECEEEETTEEEEBCCEEECTTSCEEEECCBTSCEEEEEEEEE T ss_pred EECCCCCCEEEECCEEEEECCCCEEEECCCCCCCEEEEEEEH T ss_conf 101577854876886899489978887567778548999751 No 12 >3dla_A Glutamine-dependent NAD(+) synthetase; glutaminase, ammonia tunneling, enzyme, glutamine-amido transferase, ATP-binding, ligase; HET: NXX ONL; 2.35A {Mycobacterium tuberculosis} Probab=99.86 E-value=4.8e-21 Score=154.18 Aligned_cols=235 Identities=11% Similarity=0.044 Sum_probs=152.7 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHH----HHH-------HHHHHHHHH Q ss_conf 553210012442035554333357899875431013346686189831210110001----123-------466776564 Q gi|254780425|r 241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIV----DQP-------SILKKIASV 309 (518) Q Consensus 241 ~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~----~~~-------~~~~~l~~~ 309 (518) .-++|+++|.|.-.. |.+...++..++.+. +.+.++||||+||-+++-+.- .++ ...+.+.+. T Consensus 11 g~irIA~aQ~n~~~G---D~~~N~~~I~~~i~~---A~~~gadLvvfPEL~ltGY~~~Dl~~~~~f~~~~~~~l~~La~~ 84 (680) T 3dla_A 11 GFVRVAACTHHTTIG---DPAANAASVLDMARA---CHDDGAALAVFPELTLSGYSIEDVLLQDSLLDAVEDALLDLVTE 84 (680) T ss_dssp TEEEEEEEECCCCTT---CHHHHHHHHHHHHHH---HHHTTCSEEECCTTTTTCGGGGGGGGCHHHHHHHHHHHHHHHHH T ss_pred CCEEEEEEECCCCCC---CHHHHHHHHHHHHHH---HHHCCCCEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 816999991899877---999999999999999---99889969997887202698677720889999999999999997 Q ss_pred HCC-CCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHH-CCC-CCCCCCCCCC Q ss_conf 107-9824201100123455751210000367321221112563342213310010000121110-012-2221013587 Q gi|254780425|r 310 LKI-NQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLD-FYM-FPLDYSSSDI 386 (518) Q Consensus 310 ~~~-~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~-~~~-~~~~~~~g~~ 386 (518) +++ +..+++|.+..+ +++.||++++++ +|++..+|+|+||-.+|||-.-|.+-++-... ... ...+...+.. T Consensus 85 ~~~~~i~iivG~p~~~----~~~lyNsa~vi~-~G~i~~~y~K~~LP~y~vFdE~RyF~pg~~~~~~~~~~~~~~~~~~~ 159 (680) T 3dla_A 85 SADLLPVLVVGAPLRH----RHRIYNTAVVIH-RGAVLGVVPKSYLPTYREFYERRQMAPGDGERGTIRIGGADVAFGTD 159 (680) T ss_dssp GGGCCSEEEEEEEEEE----TTEEEEEEEEEE-TTEEEEEEECSCCCEETTEEHHHHCBCCTTCCSEEESSSCEEEBSSS T ss_pred HCCCCEEEEEEEEEEE----CCEEEEEEEEEE-CCEEEEEEECCCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCCCCC T ss_conf 1516869999899978----992999999999-99899998286487998745123356678778638850433355688 Q ss_pred C-CCEEECCCCEEECCCCHHHHHHHHH-HC--CCCCCEEEEECCCCCCCCC-HHHHHHHHHHHHHHHCCCEEEEEECCC- Q ss_conf 7-6200012200102221666558888-51--2699779996277557676-289999999999997299199985597- Q gi|254780425|r 387 S-PLLGLSEKLRLYPLLFSDALFHQDI-NN--LENVSAILNIIDDSGFMGS-GTDHSFRYAQIQAVEIGLPLIRATNNG- 460 (518) Q Consensus 387 ~-~~~~~~~~~~~~~~ICyE~~f~~~~-r~--~~~a~~lvn~tNd~Wf~~s-~~~qH~~~a~~RAiE~~r~~vra~ntG- 460 (518) . ......++.++|..||||.-||+.. +. .+++++++|++. |.... ...++..+++.||.+++.+++.+.+.| T Consensus 160 ~~~~v~~~~g~~iG~~ICeD~w~~~~p~~~l~~~Ga~ii~~~sA--sp~~~~k~~~r~~l~~~~a~~~~~~~v~~n~~gg 237 (680) T 3dla_A 160 LLFAASDLPGFVLHVEICEDMFVPMPPSAEAALAGATVLANLSG--SPITIGRAEDRRLLARSASARCLAAYVYAAAGEG 237 (680) T ss_dssp EEEEETTCTTCEEEEEEGGGGTSSSCHHHHHHHTTCCEEEEECC--CCCCTTHHHHHHHHHHHHHHHTTSEEEEECCCTT T ss_pred CCEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 51246850795564101066431269999999769964346420--0011001457889999999983676336642446 Q ss_pred ---------CCEEECCCCEEEEECCCCCCE--EEEEEEC Q ss_conf ---------046998998087773899827--9999960 Q gi|254780425|r 461 ---------VSAFLDERGQIISSVYADRGA--SIDMHFQ 488 (518) Q Consensus 461 ---------iS~~id~~G~i~~~~~~~~~~--~l~~~v~ 488 (518) -|.+|+|+|+++++.+.|+++ +++.++- T Consensus 238 ~d~~~~~~gGs~iI~~~G~ila~~~~f~e~~~vv~adiD 276 (680) T 3dla_A 238 ESTTDLAWDGQTMIWENGALLAESERFPKGVRRSVADVD 276 (680) T ss_dssp SCCSSCCCCCCEEEEETTEEEEECCSSCSSCEEEEEEEE T ss_pred CCCCEEECCCCEEEECCCCEEEECCCCCCCCEEEEEEEE T ss_conf 664327638857993799689844566555158999952 No 13 >3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406} Probab=99.84 E-value=8.7e-20 Score=145.99 Aligned_cols=233 Identities=11% Similarity=0.011 Sum_probs=148.0 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHH----HHHHH----HHHHHHHHCC Q ss_conf 553210012442035554333357899875431013346686189831210110001----12346----6776564107 Q gi|254780425|r 241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIV----DQPSI----LKKIASVLKI 312 (518) Q Consensus 241 ~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~----~~~~~----~~~l~~~~~~ 312 (518) .+++|++.|.|.-+. |.+...++..+..+. +.+.++||||+||-++.-+.- ..+.+ .+.+.+++++ T Consensus 4 ~~~rIa~aQ~n~~~g---D~~~N~~~i~~~i~~---A~~~gadlvvfPEL~ltGY~~~DL~~~~~~~~~~~~~l~~la~~ 77 (634) T 3ilv_A 4 STIRIGGAAVNQTPI---DWENNVKNILDAIEE---AKNANVEILCLPELCITGYGCEDLFLTDWVAETAIEYCFEIAAS 77 (634) T ss_dssp CEEEEEEEEECCCTT---CHHHHHHHHHHHHHH---HHHTTCSEEECCTTTTTCSCCGGGGGSHHHHHHHHHHHHHHHTT T ss_pred CCEEEEEEECCCCCC---CHHHHHHHHHHHHHH---HHHCCCCEEECCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHH T ss_conf 860899995789868---799999999999999---99879969995888201599778740888999999999999986 Q ss_pred --CCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCC--- Q ss_conf --982420110012345575121000036732122111256334221331001000012111001222210135877--- Q gi|254780425|r 313 --NQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDIS--- 387 (518) Q Consensus 313 --~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~--- 387 (518) +..+++|.+..+ +++.||+++++. +|++..+|+|+||--++||---|.+-++-.. ....+..++.. T Consensus 78 ~~~i~vivG~p~~~----~~~lyNsa~vi~-~G~i~~~~~K~~Lpny~~fdE~R~F~~g~~~----~~~~~~~~~~~~p~ 148 (634) T 3ilv_A 78 CTDITVSLGLPMRI----AGITYNCVCLVE-NGIVKGFSAKQFLANEGVHYETRWFTAWPRN----HTTTFLYNDVKYPF 148 (634) T ss_dssp CTTSEEEEEEEEEE----TTEEEEEEEEEE-TTEEEEEEECSSCCCSTTCCGGGTCCCCCTT----CEEEEEETTEEEEE T ss_pred CCCCEEEEEEEEEE----CCEEEEEEEEEE-CCEEEEEEECCCCCCCCCCCCCCCCCCCCCC----CCEEEECCCCCCCC T ss_conf 69988999789978----993899999998-9999999938448999874635103678878----84389438743677 Q ss_pred -CCEEECCCCEEECCCCHHHHHHHHH-HC--CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC-- Q ss_conf -6200012200102221666558888-51--26997799962775576762899999999999972991999855970-- Q gi|254780425|r 388 -PLLGLSEKLRLYPLLFSDALFHQDI-NN--LENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGV-- 461 (518) Q Consensus 388 -~~~~~~~~~~~~~~ICyE~~f~~~~-r~--~~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~ntGi-- 461 (518) ..+...++.++|..||||.-+|+-. +. .+|+++++|++...+- .....+...+.+-||.|++.+++.+...|- T Consensus 149 g~~i~~~~g~~iGv~ICeD~w~~~~~~~~~~~~gadli~n~sAsp~~-~~k~~~r~~l~~~~a~~~~~~~vy~N~vG~~~ 227 (634) T 3ilv_A 149 GDVLYNVKDARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFA-FGKSAIRYDLVIGGSERFDCTYVYANLLGNEA 227 (634) T ss_dssp ESCCEEETTEEEEECCTTC----------CGGGTCSEEEEEECCBCC-TTHHHHHHHHHHHHHHHTTSEEEEEECEEESS T ss_pred CCEEEEECCCEEEEECCCCCCCCCHHHHHHCCCCCEEEECCCCCCCC-CCHHHHHHHHHHHHHHHHCCCEEECCCCCCCC T ss_conf 77589833635765304554667546655203574588445555444-32499999999999986287089515655435 Q ss_pred -------CEEECCCCEEEEECCCCC---CEEEEEEECC Q ss_conf -------469989980877738998---2799999606 Q gi|254780425|r 462 -------SAFLDERGQIISSVYADR---GASIDMHFQP 489 (518) Q Consensus 462 -------S~~id~~G~i~~~~~~~~---~~~l~~~v~~ 489 (518) |.+||++|+++++.+.+. ..+...++.. T Consensus 228 ~~~~~gGs~~i~~~G~~v~~~~~f~~~~~~~~~~di~~ 265 (634) T 3ilv_A 228 GRMIYDGEVLIAHKGKLIQRNDRLSFKNVNLIYADIAT 265 (634) T ss_dssp SSCEEECCEEEEETTEEEEECCSSCSSSEEEEEEEEEC T ss_pred CCCCCCCCEEEECCCCHHHHCCCCCEEEEEEEEEECCC T ss_conf 66351896699589817653666641003589986035 No 14 >3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 1xny_A* 1xnv_A* 1xo6_A Probab=55.27 E-value=7.8 Score=15.96 Aligned_cols=17 Identities=24% Similarity=0.215 Sum_probs=8.4 Q ss_pred EEEEEECCCCCEEECCC Q ss_conf 19998559704699899 Q gi|254780425|r 452 PLIRATNNGVSAFLDER 468 (518) Q Consensus 452 ~~vra~ntGiS~~id~~ 468 (518) +..-++.-.+-.+|||. T Consensus 484 ~~~aa~~~~vD~vIdP~ 500 (530) T 3iav_A 484 PYTAAERGYVDAVIMPS 500 (530) T ss_dssp SHHHHHTTSSSEECCGG T ss_pred HHHHHHCCCCCCCCCHH T ss_conf 89998747878747899 No 15 >2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus} Probab=53.00 E-value=8.4 Score=15.73 Aligned_cols=10 Identities=40% Similarity=0.541 Sum_probs=3.4 Q ss_pred HHHHCCCEEE Q ss_conf 9997299199 Q gi|254780425|r 445 QAVEIGLPLI 454 (518) Q Consensus 445 RAiE~~r~~v 454 (518) +|+|++.|+| T Consensus 151 ~A~~~~lP~I 160 (285) T 2f9i_B 151 YCTENRLPFI 160 (285) T ss_dssp HHHHTTCCEE T ss_pred HHHHCCCCEE T ss_conf 9985189769 No 16 >2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A Probab=51.96 E-value=8.7 Score=15.62 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=7.8 Q ss_pred CEEEEEECCCCCEEECCC Q ss_conf 919998559704699899 Q gi|254780425|r 451 LPLIRATNNGVSAFLDER 468 (518) Q Consensus 451 r~~vra~ntGiS~~id~~ 468 (518) .|..-+.+-.+-.+|||. T Consensus 501 ~~~~aa~~~~iD~VIdP~ 518 (548) T 2bzr_A 501 NPYVAAERGYVGAVIPPS 518 (548) T ss_dssp BSHHHHHTTSSSEECCGG T ss_pred CHHHHHHCCCCCCEECHH T ss_conf 999998728878037789 No 17 >1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Thermotoga maritima MSB8} SCOP: c.14.1.4 c.14.1.4 Probab=46.77 E-value=11 Score=15.10 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=6.9 Q ss_pred EEEEEECCCCCEEECCC Q ss_conf 19998559704699899 Q gi|254780425|r 452 PLIRATNNGVSAFLDER 468 (518) Q Consensus 452 ~~vra~ntGiS~~id~~ 468 (518) |..-+++-.+-.+|||. T Consensus 481 ~~~aa~~~~iD~VIdP~ 497 (527) T 1vrg_A 481 PYIAASRGYVDMVIDPR 497 (527) T ss_dssp HHHHHHTTSSSEECCGG T ss_pred HHHHHHCCCCCEEECHH T ss_conf 99998757888108889 No 18 >3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid metabolism, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens} Probab=42.68 E-value=12 Score=14.70 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=16.0 Q ss_pred EEEECCCCCCC-CCH-HH--HHHHHHH-HHH-HHCCCEEEEE Q ss_conf 99962775576-762-89--9999999-999-9729919998 Q gi|254780425|r 421 ILNIIDDSGFM-GSG-TD--HSFRYAQ-IQA-VEIGLPLIRA 456 (518) Q Consensus 421 lvn~tNd~Wf~-~s~-~~--qH~~~a~-~RA-iE~~r~~vra 456 (518) |+.+.|-.-|- +.. .+ +.-..|+ ++| .+...|++-. T Consensus 460 Lv~LvD~pGF~~G~~~E~~Gilk~GA~iv~Ala~~~vP~itv 501 (760) T 3ff6_A 460 LMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRQYKQPILIY 501 (760) T ss_dssp EEEECCCCCBCCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEE T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEE T ss_conf 599954887666689998489999999999997089987999 No 19 >1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A* Probab=41.88 E-value=12 Score=14.62 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=4.9 Q ss_pred ECCCCCEEECCC Q ss_conf 559704699899 Q gi|254780425|r 457 TNNGVSAFLDER 468 (518) Q Consensus 457 ~ntGiS~~id~~ 468 (518) ++-.+-.+|||. T Consensus 482 ~~g~iD~VIdP~ 493 (523) T 1on3_A 482 ARGQVDDVIDPA 493 (523) T ss_dssp HTTSSSEECCGG T ss_pred HCCCCCEEECHH T ss_conf 667888428879 No 20 >2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} Probab=33.73 E-value=17 Score=13.80 Aligned_cols=13 Identities=15% Similarity=0.539 Sum_probs=6.4 Q ss_pred ECCCCCCCCCCCC Q ss_conf 0367321221112 Q gi|254780425|r 337 YIINSKGEILASS 349 (518) Q Consensus 337 ~~~~~~g~~~~~Y 349 (518) +++|++|+++.+| T Consensus 154 fLID~~G~iv~ry 166 (183) T 2obi_A 154 FLIDKNGCVVKRY 166 (183) T ss_dssp EEECTTSCEEEEE T ss_pred EEECCCCCEEEEE T ss_conf 9998999699897 No 21 >1vp8_A Hypothetical protein AF0103; NP_068944.1, structural genomics, JCSG, joint center for structural genomics, PSI; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus dsm 4304} SCOP: c.49.1.2 Probab=32.10 E-value=18 Score=13.62 Aligned_cols=10 Identities=0% Similarity=-0.223 Sum_probs=6.1 Q ss_pred ECCCCHHHHH Q ss_conf 0222166655 Q gi|254780425|r 399 YPLLFSDALF 408 (518) Q Consensus 399 ~~~ICyE~~f 408 (518) |.-+|+|+.- T Consensus 139 G~KVavEi~l 148 (201) T 1vp8_A 139 GLKVCVEITI 148 (201) T ss_dssp HHHHHHHHHH T ss_pred CCEEEEEEEE T ss_conf 7479999865 No 22 >1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4 Probab=29.14 E-value=20 Score=13.30 Aligned_cols=13 Identities=23% Similarity=0.130 Sum_probs=5.2 Q ss_pred EECCCCCEEECCC Q ss_conf 8559704699899 Q gi|254780425|r 456 ATNNGVSAFLDER 468 (518) Q Consensus 456 a~ntGiS~~id~~ 468 (518) ++.-.+-.+|||. T Consensus 534 a~~g~vD~iIdP~ 546 (587) T 1pix_A 534 AELGLVDEIVDMN 546 (587) T ss_dssp HHHTSSSEECCTT T ss_pred HHCCCCCEEECHH T ss_conf 9728868128839 No 23 >1t57_A Conserved protein MTH1675; structural genomics, FMN, methanobacterium thermoautotrophicum, PSI; HET: FMN; 2.30A {Methanothermobacterthermautotrophicus} SCOP: c.49.1.2 Probab=29.12 E-value=20 Score=13.30 Aligned_cols=10 Identities=0% Similarity=-0.270 Sum_probs=6.2 Q ss_pred ECCCCHHHHH Q ss_conf 0222166655 Q gi|254780425|r 399 YPLLFSDALF 408 (518) Q Consensus 399 ~~~ICyE~~f 408 (518) |.-+|+|+.- T Consensus 145 G~KVavEi~l 154 (206) T 1t57_A 145 GFKVCVEIAI 154 (206) T ss_dssp HHHHHHHHHH T ss_pred CCEEEEEEEE T ss_conf 7479999998 No 24 >1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Probab=24.27 E-value=7.7 Score=15.98 Aligned_cols=31 Identities=19% Similarity=0.566 Sum_probs=19.0 Q ss_pred EEECCCCC-CCCCCCCCCEEEE--EHHHHHCCCC Q ss_conf 00036732-1221112563342--2133100100 Q gi|254780425|r 335 SIYIINSK-GEILASSNAKHLV--PFAEYLPYRN 365 (518) Q Consensus 335 s~~~~~~~-g~~~~~Y~K~~LV--PFGEyiP~~~ 365 (518) +.++++++ |+++.+..+..++ |-||..||++ T Consensus 111 t~ilid~~~G~vi~~~~~~~~~~d~~~~~f~~~~ 144 (146) T 1o8x_A 111 TLIGVDADSGDVVTTRARATLVKDPEGEQFPWKD 144 (146) T ss_dssp EEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCC T ss_pred EEEEEECCCCEEEEECCHHHHHHCCCCCCCCCCC T ss_conf 7999979999998615677785392334489899 No 25 >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* Probab=22.70 E-value=22 Score=13.05 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=20.6 Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 346686189831210110001123466776564107 Q gi|254780425|r 277 AGELEPVIIVWAYLPFPFSIVDQPSILKKIASVLKI 312 (518) Q Consensus 277 ~~~~~~dLiVWPEsa~p~~~~~~~~~~~~l~~~~~~ 312 (518) +.+.+|+||+...|++|+..+ .+++.+.+++ T Consensus 189 a~~~kPklIi~G~S~y~r~~d-----~~~~reIad~ 219 (483) T 1rv3_A 189 ARLFHPKLIIAGTSCYSRNLD-----YGRLRKIADE 219 (483) T ss_dssp HHHHCCSEEEECCSSCCSCCC-----HHHHHHHHHH T ss_pred HHCCCCCEEEECCCCCCCCCC-----HHHHHHHHHH T ss_conf 733699879957755757569-----9999999855 No 26 >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} SCOP: c.67.1.4 PDB: 3ou5_A Probab=21.45 E-value=24 Score=12.78 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=21.0 Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 346686189831210110001123466776564107 Q gi|254780425|r 277 AGELEPVIIVWAYLPFPFSIVDQPSILKKIASVLKI 312 (518) Q Consensus 277 ~~~~~~dLiVWPEsa~p~~~~~~~~~~~~l~~~~~~ 312 (518) +.+.+|+|||...|++|+..+ .+++.+.+++ T Consensus 199 a~~~kPklIi~G~S~y~r~~d-----~~~~reIad~ 229 (490) T 2a7v_A 199 ARLFRPRLIIAGTSAYARLID-----YARMREVCDE 229 (490) T ss_dssp HHHHCCSEEEECCSSCCSCCC-----HHHHHHHHHH T ss_pred HHHCCCCEEEECCCCCCCCCC-----HHHHHHHHHC T ss_conf 860599889977745655468-----8999999850 No 27 >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, cytoplasm, one-carbon metabolism, pyridoxal phosphate; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 3g8m_A* 1eqb_A* Probab=20.44 E-value=26 Score=12.54 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=20.5 Q ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 346686189831210110001123466776564107 Q gi|254780425|r 277 AGELEPVIIVWAYLPFPFSIVDQPSILKKIASVLKI 312 (518) Q Consensus 277 ~~~~~~dLiVWPEsa~p~~~~~~~~~~~~l~~~~~~ 312 (518) +.+.+|.||+...|++|+..+ .+++.+.+++ T Consensus 165 a~~~kPklIi~G~S~y~r~~d-----~~~~reiad~ 195 (420) T 3gbx_A 165 AKEHKPKMIIGGFSAYSGVVD-----WAKMREIADS 195 (420) T ss_dssp HHHHCCSEEEECCTTCCSCCC-----HHHHHHHHHH T ss_pred HHHCCCCEEEECCCCCCCCCC-----HHHHHHHHHH T ss_conf 986099879935533667659-----9999999864 Done!