Query gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 518 No_of_seqs 165 out of 2706 Neff 8.6 Searched_HMMs 13730 Date Wed Jun 1 04:10:06 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780425.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1uf5a_ d.160.1.2 (A:) N-carba 100.0 4.5E-34 3.3E-38 237.5 15.7 244 241-496 2-282 (303) 2 d1f89a_ d.160.1.1 (A:) hypothe 100.0 3.1E-29 2.3E-33 206.0 15.9 234 239-491 6-265 (281) 3 d1j31a_ d.160.1.2 (A:) Hypothe 100.0 1.3E-28 9.1E-33 202.1 14.7 211 243-489 2-237 (262) 4 d1emsa2 d.160.1.1 (A:10-280) N 100.0 2.3E-27 1.6E-31 193.9 15.2 234 241-494 4-260 (271) 5 d1sgva1 b.122.1.1 (A:236-292) 78.4 0.99 7.2E-05 20.2 3.6 36 442-477 9-44 (57) 6 d2a7sa1 c.14.1.4 (A:20-277) Pr 58.3 4 0.00029 16.3 5.8 36 422-457 92-131 (258) 7 d1pixa2 c.14.1.4 (A:1-287) Glu 39.2 7.9 0.00058 14.4 4.3 10 303-312 63-72 (287) 8 d1uyra1 c.14.1.4 (A:1482-1814) 32.2 10 0.00074 13.6 5.2 44 418-461 98-146 (333) 9 d1vp8a_ c.49.1.2 (A:) Hypothet 30.4 11 0.00079 13.4 2.5 10 399-408 128-137 (190) 10 d2a7va1 c.67.1.4 (A:26-488) Se 25.8 10 0.00073 13.7 0.9 21 277-297 172-192 (463) 11 d1rv3a_ c.67.1.4 (A:) Serine h 25.2 10 0.00076 13.6 0.9 22 276-297 175-196 (470) 12 d1t57a_ c.49.1.2 (A:) Hypothet 23.0 15 0.0011 12.6 2.5 10 399-408 125-134 (186) 13 d1dfoa_ c.67.1.4 (A:) Serine h 20.6 15 0.0011 12.6 0.9 32 276-312 160-191 (416) 14 d2o3aa1 c.116.1.8 (A:1-167) Un 20.5 15 0.0011 12.6 0.8 30 399-428 132-162 (167) No 1 >d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase {Agrobacterium sp. [TaxId: 361]} Probab=100.00 E-value=4.5e-34 Score=237.55 Aligned_cols=244 Identities=15% Similarity=0.160 Sum_probs=178.5 Q ss_pred CCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHH-----H------------HHHH Q ss_conf 55321001244-2035554333357899875431013346686189831210110001-----1------------2346 Q gi|254780425|r 241 ISPVIRIVQPG-INPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIV-----D------------QPSI 302 (518) Q Consensus 241 ~~~~V~iVQpn-i~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~-----~------------~~~~ 302 (518) .+++|+++|.+ +... .+++..++++.++.+. +.+.++|||||||.+++-+.. + .... T Consensus 2 ~~~~ia~~Q~~Pi~~~--~~~~~~l~r~~~li~~---A~~~gadlvvfPE~~l~Gy~~~~~~~~~~~~~~~~~~~~~~~~ 76 (303) T d1uf5a_ 2 RQMILAVGQQGPIARA--ETREQVVVRLLDMLTK---AASRGANFIVFPELALTTFFPRWHFTDEAELDSFYETEMPGPV 76 (303) T ss_dssp CEEEEEEEEBCCCCTT--CCHHHHHHHHHHHHHH---HHHTTCSEEECCTTTTSCCGGGSCCCCHHHHHTTSBSSSSCTT T ss_pred CEEEEEEECCCCCCCC--CCHHHHHHHHHHHHHH---HHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHH T ss_conf 4799999936776888--5899999999999999---9988893999277852358721001366677666655158789 Q ss_pred HHHHHHHHCC-CCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCC Q ss_conf 6776564107-982420110012345575121000036732122111256334221331001000012111001222210 Q gi|254780425|r 303 LKKIASVLKI-NQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDY 381 (518) Q Consensus 303 ~~~l~~~~~~-~~~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~ 381 (518) .+.+.+.+++ +..+++|.......++..++|||+++++++|++..+|+|+||+|++||.|++.+-..-. ..+ T Consensus 77 ~~~~~~~A~~~~i~i~~G~~~~~~~~~~~~~yNs~~li~~~G~i~~~y~K~~L~~~~e~~~~~~~~~~e~-------~~~ 149 (303) T d1uf5a_ 77 VRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEK-------RYF 149 (303) T ss_dssp THHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHH-------HHC T ss_pred HHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CEE T ss_conf 9999999986595699986543220589705899995156654323444202799765543332210134-------255 Q ss_pred CCCCCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCC-CC-----C-HHHHHHHHHHHHHHHCCCE Q ss_conf 1358776200012200102221666558888512--699779996277557-67-----6-2899999999999972991 Q gi|254780425|r 382 SSSDISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGF-MG-----S-GTDHSFRYAQIQAVEIGLP 452 (518) Q Consensus 382 ~~g~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf-~~-----s-~~~qH~~~a~~RAiE~~r~ 452 (518) .+++........++.+++.+||||..||+..|.+ +|++++++++|..+. +. . ...+|...++.||+||+.+ T Consensus 150 ~~~~~~~~~~~~~~~rig~~IC~D~~~pe~~~~la~~Ga~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~ 229 (303) T d1uf5a_ 150 EPGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAW 229 (303) T ss_dssp CCCSSCSCEEEETTEEEEECCGGGGGCHHHHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHHHHHHHHHHHHHTCE T ss_pred CCCCCCCEEEEECCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHCCHHHHHHHHHHHCCCCE T ss_conf 12577650588457278861122300257666676279889997035566677554420100101134555554305531 Q ss_pred EEEEECC---------CCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCCHH Q ss_conf 9998559---------7046998998087773899827999996067687687 Q gi|254780425|r 453 LIRATNN---------GVSAFLDERGQIISSVYADRGASIDMHFQPKVRDSFR 496 (518) Q Consensus 453 ~vra~nt---------GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T~y 496 (518) ++++.++ |.|+++||+|+++++.+.++++++.++|.+..-.+.. T Consensus 230 vv~~n~~g~~~~~~~~G~S~I~~p~G~vla~~~~~~e~vl~a~idl~~~~~~R 282 (303) T d1uf5a_ 230 SAAAGKAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELR 282 (303) T ss_dssp EEEEEBCEEETTEEECCCCEEECTTSCEEEECCSSSSEEEEEEEEGGGGHHHH T ss_pred EEECCCCCCCCCCCCCCCCEEEECCCCEEEECCCCCCEEEEEEECHHHHHHHH T ss_conf 43136422133531236758995999999877899887999998389999999 No 2 >d1f89a_ d.160.1.1 (A:) hypothetical protein yl85 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=99.96 E-value=3.1e-29 Score=205.99 Aligned_cols=234 Identities=15% Similarity=0.107 Sum_probs=165.0 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHH-------------HHHHHHH Q ss_conf 555532100124420355543333578998754310133466861898312101100011-------------2346677 Q gi|254780425|r 239 EKISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVD-------------QPSILKK 305 (518) Q Consensus 239 ~~~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~-------------~~~~~~~ 305 (518) -..+++|+++|-+.... |.+..+++..++.+.+. ....++|||||||.+++-+..+ .....+. T Consensus 6 m~~~~kia~~Q~~~~~~---D~~~N~~~~~~~i~~A~-~~~~~a~lvv~PE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~ 81 (281) T d1f89a_ 6 LSQKIKVALVQLSGSSP---DKMANLQRAATFIERAM-KEQPDTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQF 81 (281) T ss_dssp BSSCEEEEEEECCCCCS---CHHHHHHHHHHHHHHHH-HHCTTEEEEECCTTTTSCSCHHHHHHHTTBCCSSSCCHHHHH T ss_pred HCCCCEEEEEECCCCCC---CHHHHHHHHHHHHHHHH-HCCCCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHH T ss_conf 22473399995778888---99999999999999998-348999799868865578865677777765333489779999 Q ss_pred HHHHHCCCC-EEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCC Q ss_conf 656410798-2420110012345575121000036732122111256334221331001000012111001222210135 Q gi|254780425|r 306 IASVLKINQ-LLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSS 384 (518) Q Consensus 306 l~~~~~~~~-~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g 384 (518) +.+.++++. .+++|..... .++++++|||+++++++|++...|.|+++.|++++.+... .....+.+| T Consensus 82 l~~~A~~~~i~iv~G~~~~~-~~~~~~~yNs~~~i~~~G~i~~~~~k~~~~~~~~~~~~~~----------~e~~~~~~~ 150 (281) T d1f89a_ 82 LSNLANKFKIILVGGTIPEL-DPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISF----------HESETLSPG 150 (281) T ss_dssp HHHHHHHSSCEEECCCEEEE-CTTTCCEEEEEEEECTTSCEEEEEECCCCC--------------------HHHHSCCCC T ss_pred HHHHHHHCCCEEECCEEEEE-CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCEEEEE T ss_conf 99976412742312203563-1456830110111245422113332223322356643343----------332202210 Q ss_pred CCCCCEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECC--- Q ss_conf 8776200012200102221666558888512--69977999627755767628999999999999729919998559--- Q gi|254780425|r 385 DISPLLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNN--- 459 (518) Q Consensus 385 ~~~~~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~nt--- 459 (518) ....+. ..++.+++.+||||..+|+..|.+ +++++++++++. |+ .+.+.|+...++.||.||+.+++.+++. T Consensus 151 ~~~~~~-~~~~~~~g~~iC~d~~~p~~~r~~~~~~~~~i~~~~~~-~~-~~~~~~~~~~~~~rA~en~~~vv~~n~~g~~ 227 (281) T d1f89a_ 151 EKSTTI-DTKYGKFGVGICYDMRFPELAMLSARKGAFAMIYPSAF-NT-VTGPLHWHLLARSRAVDNQVYVMLCSPARNL 227 (281) T ss_dssp CCCEEE-EETTEEEEECCGGGGGCHHHHHHHHHTTEEEEEEECCC-BT-THHHHHHHHHHHHHHHHHTSEEEEECCCCCT T ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEEECC-CC-CCCCCCCCCHHHHHCCCCCCCCEEEEECCCC T ss_conf 001110-14654444433333322221000001355532675244-55-5441000220222111024333012331467 Q ss_pred -------CCCEEECCCCEEEEECCCCCCEEEEEEECCCC Q ss_conf -------70469989980877738998279999960676 Q gi|254780425|r 460 -------GVSAFLDERGQIISSVYADRGASIDMHFQPKV 491 (518) Q Consensus 460 -------GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~ 491 (518) |.|+++||+|+|+++++.+ ++++++++.+.. T Consensus 228 ~~~~~~~G~S~Ii~p~G~vl~~~~~~-e~v~~adidl~~ 265 (281) T d1f89a_ 228 QSSYHAYGHSIVVDPRGKIVAEAGEG-EEIIYAELDPEV 265 (281) T ss_dssp TSSSCBCCCCEEECTTSCEEEECCSS-SEEEEEEECHHH T ss_pred CCCCEEEECEEEECCCCCEEEECCCC-CEEEEEEECHHH T ss_conf 88867611449985999888877999-849999973899 No 3 >d1j31a_ d.160.1.2 (A:) Hypothetical protein PH0642 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=99.96 E-value=1.3e-28 Score=202.06 Aligned_cols=211 Identities=13% Similarity=0.051 Sum_probs=154.4 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCHHH-------------HHHHHHHHHHH Q ss_conf 32100124420355543333578998754310133466861898312101100011-------------23466776564 Q gi|254780425|r 243 PVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVD-------------QPSILKKIASV 309 (518) Q Consensus 243 ~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa~p~~~~~-------------~~~~~~~l~~~ 309 (518) ++|+++|.+... .|.++.+++..++.+. +.+.++||||+||.+++-+... +....+.+.+. T Consensus 2 ~ria~~Q~~~~~---~d~e~nl~~i~~~i~~---A~~~gadlvvfPE~~l~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (262) T d1j31a_ 2 VKVGYIQMEPKI---LELDKNYSKAEKLIKE---ASKEGAKLVVLPELFDTGYNFESREEVFDVAQQIPEGETTTFLMEL 75 (262) T ss_dssp EEEEEEECCCCT---TCHHHHHHHHHHHHHH---HHHTTCSEEECCTTTTTCSCCSSHHHHHTTCBCTTTSHHHHHHHHH T ss_pred EEEEEEECCCCC---CCHHHHHHHHHHHHHH---HHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH T ss_conf 799999789987---8999999999999999---9988998999488654578602356765433201468999999985 Q ss_pred HCCCCE-EEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCC Q ss_conf 107982-4201100123455751210000367321221112563342213310010000121110012222101358776 Q gi|254780425|r 310 LKINQL-LIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISP 388 (518) Q Consensus 310 ~~~~~~-li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~ 388 (518) +++++. ++.|....+ ++++||+++++++ |++..+|+|+||++..|. .+.+|+... T Consensus 76 A~~~~i~i~~g~~~~~----~~~~~n~~~~i~~-g~~~~~y~K~~l~~~e~~-------------------~~~~G~~~~ 131 (262) T d1j31a_ 76 ARELGLYIVAGTAEKS----GNYLYNSAVVVGP-RGYIGKYRKIHLFYREKV-------------------FFEPGDLGF 131 (262) T ss_dssp HHHHTCEEEEEEEEEE----TTEEEEEEEEEET-TEEEEEEECSSCCTTHHH-------------------HCCCCCSCS T ss_pred HHCCCCEEEEEEEECC----CCCCCCCCEEEEE-EEEEEEEEEEECCCCCCE-------------------EECCCCCCC T ss_conf 3126824775431000----1234543069985-227999865655766724-------------------677899875 Q ss_pred CEEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC-------- Q ss_conf 200012200102221666558888512--6997799962775576762899999999999972991999855-------- Q gi|254780425|r 389 LLGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATN-------- 458 (518) Q Consensus 389 ~~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~n-------- 458 (518) .+...++.++|.+||||..||+..|.. +|++++++++++.+- . + ..+.+.||+||+.+++.|.. T Consensus 132 ~v~~~~~~~ig~~IC~D~~~pe~~~~~~~~ga~lil~p~~~~~~--~--~--~~~~~~rA~en~~~vv~~n~~G~~~~~~ 205 (262) T d1j31a_ 132 KVFDIGFAKVGVMICFDWFFPESARTLALKGAEIIAHPANLVMP--Y--A--PRAMPIRALENRVYTITADRVGEERGLK 205 (262) T ss_dssp CEEECSSCEEEECCGGGGGSHHHHHHHHHTTCSEEEEECCCCSS--C--H--HHHHHHHHHHHTCEEEEECCCSEETTEE T ss_pred EEEEECCCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCC--C--C--HHHHHHHHHCCCCEEEEEECCCCCCCCC T ss_conf 58996895699998545642388998887403345677333464--2--0--4666556540643289972355458852 Q ss_pred -CCCCEEECCCCEEEEECCCCCCEEEEEEECC Q ss_conf -9704699899808777389982799999606 Q gi|254780425|r 459 -NGVSAFLDERGQIISSVYADRGASIDMHFQP 489 (518) Q Consensus 459 -tGiS~~id~~G~i~~~~~~~~~~~l~~~v~~ 489 (518) .|-|+++||+|+++++.+.++++++.+++.+ T Consensus 206 ~~G~S~i~~p~G~~l~~~~~~~e~i~~a~iDl 237 (262) T d1j31a_ 206 FIGKSLIASPKAEVLSIASETEEEIGVVEIDL 237 (262) T ss_dssp CCCCCEEECTTSCEEEECCSSCCEEEEEEECH T ss_pred CCCCCEEEECCCCEEEECCCCCCEEEEEEEEC T ss_conf 26788899399989987689987799999981 No 4 >d1emsa2 d.160.1.1 (A:10-280) NIT-FHIT fusion protein, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Probab=99.95 E-value=2.3e-27 Score=193.86 Aligned_cols=234 Identities=16% Similarity=0.047 Sum_probs=166.7 Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCC-CCCCHHH---------HHHHHHHHHHHH Q ss_conf 553210012442035554333357899875431013346686189831210-1100011---------234667765641 Q gi|254780425|r 241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLP-FPFSIVD---------QPSILKKIASVL 310 (518) Q Consensus 241 ~~~~V~iVQpni~~~~k~~~~~~~~~~~~l~~~~~~~~~~~~dLiVWPEsa-~p~~~~~---------~~~~~~~l~~~~ 310 (518) ...+|+++|.|... |.+...++..++.+ ++.+.++|||||||.+ ++....+ +....+.+.+.+ T Consensus 4 ~~~rVA~~Q~~~~~----d~~~N~~~i~~~i~---~A~~~gadlvvfPE~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~a 76 (271) T d1emsa2 4 GRHFIAVCQMTSDN----DLEKNFQAAKNMIE---RAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKYRELA 76 (271) T ss_dssp SEEEEEEECBCCCS----CHHHHHHHHHHHHH---HHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHHHHHHHHHHHHH T ss_pred CCEEEEEEECCCCC----CHHHHHHHHHHHHH---HHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 88699999588988----99999999999999---999785969998866212187978999887752146777665420 Q ss_pred CCCC-EEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 0798-242011001234557512100003673212211125633422133100100001211100122221013587762 Q gi|254780425|r 311 KINQ-LLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISPL 389 (518) Q Consensus 311 ~~~~-~li~G~~~~~~~~~~~~~yNs~~~~~~~g~~~~~Y~K~~LVPFGEyiP~~~~~~~l~~~~~~~~~~~~~g~~~~~ 389 (518) +++. .+++|.......+++.++||++++++++|++..+|+|+||.|+.++-+.+.. ...-+.+|+.... T Consensus 77 ~~~~i~v~~G~~~~~~~~~~~~~yNsa~vi~~~g~i~~~~~K~~l~~~~~~~~~~~~----------e~~~~~~g~~~~~ 146 (271) T d1emsa2 77 RKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLM----------ESEFSKAGTEMIP 146 (271) T ss_dssp HHTTCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEE----------GGGTCCCCCSCCC T ss_pred HCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCEEEEEEEEECCCCCCCCCCCCEE----------CCCCCCCCCCCCC T ss_conf 003432224301466304788546789999479668774224024554445653100----------1112468854430 Q ss_pred EEECCCCEEECCCCHHHHHHHHHHCC--CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECC-------- Q ss_conf 00012200102221666558888512--69977999627755767628999999999999729919998559-------- Q gi|254780425|r 390 LGLSEKLRLYPLLFSDALFHQDINNL--ENVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNN-------- 459 (518) Q Consensus 390 ~~~~~~~~~~~~ICyE~~f~~~~r~~--~~a~~lvn~tNd~Wf~~s~~~qH~~~a~~RAiE~~r~~vra~nt-------- 459 (518) ....+..+++.+||||..||+..|.+ ++++++++++.+.+ +....++....+.||.|++.+++.+.+. T Consensus 147 v~~~~~~~~g~~iC~D~~~~e~~~~~~~~ga~~i~~p~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~n~~g~~~~~~~ 224 (271) T d1emsa2 147 PVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTL--NTGLAHWETLLRARAIENQCYVVAAAQTGAHNPKRQ 224 (271) T ss_dssp CEEETTEEECCCCGGGGGCHHHHHHHHHTTCSEEECCBCCCH--HHHHHHHHHHHHHHHHHHTCEEEECBBEEEEETTEE T ss_pred EEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCC--CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCE T ss_conf 251277411442132211228999998605728986353555--432046799999877630443000111246789977 Q ss_pred --CCCEEECCCCEEEEECCCCCCEEEEEEECCCCCCC Q ss_conf --70469989980877738998279999960676876 Q gi|254780425|r 460 --GVSAFLDERGQIISSVYADRGASIDMHFQPKVRDS 494 (518) Q Consensus 460 --GiS~~id~~G~i~~~~~~~~~~~l~~~v~~~~~~T 494 (518) |.|+++||+|+|+++.+. +++++.+++.+..-.+ T Consensus 225 ~~G~S~I~~P~G~il~~~~~-~e~il~adiDl~~i~~ 260 (271) T d1emsa2 225 SYGHSMVVDPWGAVVAQCSE-RVDMCFAEIDLSYVDT 260 (271) T ss_dssp EECCCEEECTTSCEEEECCS-SSCEEEEEEEHHHHHH T ss_pred EEEEEEEECCCCCEEEECCC-CCEEEEEEECHHHHHH T ss_conf 74546999499948987799-9829999971899999 No 5 >d1sgva1 b.122.1.1 (A:236-292) Pseudouridine synthase II TruB, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Probab=78.41 E-value=0.99 Score=20.23 Aligned_cols=36 Identities=28% Similarity=0.300 Sum_probs=31.6 Q ss_pred HHHHHHHCCCEEEEEECCCCCEEECCCCEEEEECCC Q ss_conf 999999729919998559704699899808777389 Q gi|254780425|r 442 AQIQAVEIGLPLIRATNNGVSAFLDERGQIISSVYA 477 (518) Q Consensus 442 a~~RAiE~~r~~vra~ntGiS~~id~~G~i~~~~~~ 477 (518) ...+++-+||++-.+...|+.+.+||+|++++-++. T Consensus 9 ~Ea~~l~~Gr~L~~~g~~G~~Aa~~PdG~~iALl~~ 44 (57) T d1sgva1 9 AEASAAANGRSLPAVGIDGVYAACDADGRVIALLRD 44 (57) T ss_dssp HHHHHHHTTCCCBCCCCCSCEEEECTTSCEEEEEEE T ss_pred HHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEEEEC T ss_conf 999997768865867898777999999979999974 No 6 >d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]} Probab=58.33 E-value=4 Score=16.28 Aligned_cols=36 Identities=28% Similarity=0.271 Sum_probs=14.3 Q ss_pred EEECCCCCC-CCC-HHHHHHHHH--HHHHHHCCCEEEEEE Q ss_conf 996277557-676-289999999--999997299199985 Q gi|254780425|r 422 LNIIDDSGF-MGS-GTDHSFRYA--QIQAVEIGLPLIRAT 457 (518) Q Consensus 422 vn~tNd~Wf-~~s-~~~qH~~~a--~~RAiE~~r~~vra~ 457 (518) +...+|.-| +.| ++..+..+. .=+|+|++.|+|.-. T Consensus 92 ~v~a~Dft~~gGS~g~~~g~K~~ra~e~A~~~~lP~I~l~ 131 (258) T d2a7sa1 92 CIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGIN 131 (258) T ss_dssp EEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEE T ss_pred EEECCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 8741343486771332456688898999876598669986 No 7 >d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]} Probab=39.18 E-value=7.9 Score=14.35 Aligned_cols=10 Identities=20% Similarity=0.484 Sum_probs=3.7 Q ss_pred HHHHHHHHCC Q ss_conf 6776564107 Q gi|254780425|r 303 LKKIASVLKI 312 (518) Q Consensus 303 ~~~l~~~~~~ 312 (518) ++++..++.+ T Consensus 63 ReRI~~LlD~ 72 (287) T d1pixa2 63 LQRIEKLVEP 72 (287) T ss_dssp HHHHHHHSCT T ss_pred HHHHHHHCCC T ss_conf 9999997697 No 8 >d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=32.21 E-value=10 Score=13.64 Aligned_cols=44 Identities=27% Similarity=0.440 Sum_probs=28.9 Q ss_pred CCEEEEECCCCCC-CCC-HHHHH--HHHHHHHHHHCCCEEEEE-ECCCC Q ss_conf 9779996277557-676-28999--999999999729919998-55970 Q gi|254780425|r 418 VSAILNIIDDSGF-MGS-GTDHS--FRYAQIQAVEIGLPLIRA-TNNGV 461 (518) Q Consensus 418 a~~lvn~tNd~Wf-~~s-~~~qH--~~~a~~RAiE~~r~~vra-~ntGi 461 (518) ..-++.+.||-.+ ++| ++..+ +..+.=.|.|.|.|+|.- +|+|- T Consensus 98 GR~vvvianD~T~~~GS~g~~e~~k~~~a~elA~~~~iP~I~l~~~sGA 146 (333) T d1uyra1 98 GRQFVVVANDITFKIGSFGPQEDEFFNKVTEYARKRGIPRIYLAANSGA 146 (333) T ss_dssp CEEEEEEEECTTSGGGCBCHHHHHHHHHHHHHHHHHTCCEEEEECCCCB T ss_pred CCEEEEEEECCCEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 9289999987720057568889999999999999859988999768886 No 9 >d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=30.45 E-value=11 Score=13.45 Aligned_cols=10 Identities=0% Similarity=-0.223 Sum_probs=6.3 Q ss_pred ECCCCHHHHH Q ss_conf 0222166655 Q gi|254780425|r 399 YPLLFSDALF 408 (518) Q Consensus 399 ~~~ICyE~~f 408 (518) |.-+|+|+.- T Consensus 128 G~KVavEi~l 137 (190) T d1vp8a_ 128 GLKVCVEITI 137 (190) T ss_dssp HHHHHHHHHH T ss_pred CCEEEEEEEE T ss_conf 7579999999 No 10 >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Probab=25.83 E-value=10 Score=13.67 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=16.8 Q ss_pred CCCCCCCEEEECCCCCCCCHH Q ss_conf 346686189831210110001 Q gi|254780425|r 277 AGELEPVIIVWAYLPFPFSIV 297 (518) Q Consensus 277 ~~~~~~dLiVWPEsa~p~~~~ 297 (518) +.+.+|+|||-..|++|+... T Consensus 172 a~~~kPklIi~G~S~y~r~~d 192 (463) T d2a7va1 172 ARLFRPRLIIAGTSAYARLID 192 (463) T ss_dssp HHHHCCSEEEECCSSCCSCCC T ss_pred HHHCCCCEEEECCCCCCCCCC T ss_conf 750477657723301355467 No 11 >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Probab=25.22 E-value=10 Score=13.55 Aligned_cols=22 Identities=14% Similarity=0.162 Sum_probs=17.1 Q ss_pred CCCCCCCCEEEECCCCCCCCHH Q ss_conf 3346686189831210110001 Q gi|254780425|r 276 SAGELEPVIIVWAYLPFPFSIV 297 (518) Q Consensus 276 ~~~~~~~dLiVWPEsa~p~~~~ 297 (518) .+...+|+||+...|++|+... T Consensus 175 ~a~~~kPklIi~G~S~y~r~~d 196 (470) T d1rv3a_ 175 NARLFHPKLIIAGTSCYSRNLD 196 (470) T ss_dssp HHHHHCCSEEEECCSSCCSCCC T ss_pred HHHHHCCCEEEECHHHCCCCCC T ss_conf 9874076547603555156677 No 12 >d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=23.02 E-value=15 Score=12.59 Aligned_cols=10 Identities=0% Similarity=-0.270 Sum_probs=6.6 Q ss_pred ECCCCHHHHH Q ss_conf 0222166655 Q gi|254780425|r 399 YPLLFSDALF 408 (518) Q Consensus 399 ~~~ICyE~~f 408 (518) |.-+|+|+.- T Consensus 125 G~KVavEi~l 134 (186) T d1t57a_ 125 GFKVCVEIAI 134 (186) T ss_dssp HHHHHHHHHH T ss_pred CCEEEEEEEE T ss_conf 7579999999 No 13 >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} Probab=20.62 E-value=15 Score=12.63 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=21.0 Q ss_pred CCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 3346686189831210110001123466776564107 Q gi|254780425|r 276 SAGELEPVIIVWAYLPFPFSIVDQPSILKKIASVLKI 312 (518) Q Consensus 276 ~~~~~~~dLiVWPEsa~p~~~~~~~~~~~~l~~~~~~ 312 (518) .+.+.+|+||+-..|++|+... .+++.+.+++ T Consensus 160 ~a~~~kPklIi~G~S~y~r~~d-----~~~~reiad~ 191 (416) T d1dfoa_ 160 QAKEHKPKMIIGGFSAYSGVVD-----WAKMREIADS 191 (416) T ss_dssp HHHHHCCSEEEEECSSCCSCCC-----HHHHHHHHHH T ss_pred HHHHHCCCEEEECCCCCCCCCC-----HHHHHHHHHH T ss_conf 9998365648734322556558-----7999999875 No 14 >d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]} Probab=20.52 E-value=15 Score=12.63 Aligned_cols=30 Identities=7% Similarity=0.025 Sum_probs=21.5 Q ss_pred ECCCCHHHHHHHH-HHCCCCCCEEEEECCCC Q ss_conf 0222166655888-85126997799962775 Q gi|254780425|r 399 YPLLFSDALFHQD-INNLENVSAILNIIDDS 428 (518) Q Consensus 399 ~~~ICyE~~f~~~-~r~~~~a~~lvn~tNd~ 428 (518) +-+|+-|..|++- -+++.+|.+.|.+|+.+ T Consensus 132 ALAiFLDrl~G~~l~~~F~~akl~ViPs~~G 162 (167) T d2o3aa1 132 ALAVFLDRVLGKVFDISFDDAKIKVIPSERG 162 (167) T ss_dssp HHHHHHHHHTCCTTTCCCTTCSSEEECCSSS T ss_pred HHHHHHHHHHCHHHHCCCCCCEEEEEECCCC T ss_conf 9999999861757642379972899655557 Done!