RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780425|ref|YP_003064838.1| apolipoprotein
N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(518 letters)
>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum
[TaxId: 1050]}
Length = 280
Score = 31.3 bits (71), Expect = 0.22
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 7/104 (6%)
Query: 71 FFVGWLFGVGYFLAGLWWVREGIVDQIGSRFPFWGVVLFFVMISFLLAIFYGVATSLASL 130
F+VG+ VG+ L + IG P + + + + +A
Sbjct: 29 FYVGFFGVVGFCFTLLGVLLIVWGATIGPTGPTSDLQTYNLWRISIAPPDLSYGLRMA-P 87
Query: 131 LWSTGMGRICVFACAVGF-CEWLRSV-----LGIGTWNAIGYAA 168
L G+ +I A F LR V LGIG ++
Sbjct: 88 LTEGGLWQIITICAAGAFISWALREVEICRKLGIGFHVPFAFSF 131
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal
domain {Moorella thermoacetica [TaxId: 1525]}
Length = 249
Score = 30.7 bits (68), Expect = 0.32
Identities = 13/101 (12%), Positives = 30/101 (29%), Gaps = 6/101 (5%)
Query: 172 PVMMQSVHWIGLFGMNALSVFCFASPALFGTRRDVNIGIILSSTLLILHIAYGWWILTED 231
+ + + L + + + ++ Y IL
Sbjct: 145 MLHWPDSMFTYVPEEALL--LPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPF 202
Query: 232 SKSSL----KFEKISPVIRIVQPGINPAIKEDREKILERYL 268
S + +KI+ I+ + P ++D +I+E Y
Sbjct: 203 SNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGRIIEAYA 243
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1
{Thermosynechococcus elongatus [TaxId: 146786]}
Length = 335
Score = 30.5 bits (69), Expect = 0.34
Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 28/131 (21%)
Query: 64 ISRVGSSFFVGWLFGV--------GYFLAGLWWVREGIVDQIGSRFPFWGVVLFFVMISF 115
++ + +VGW FGV + ++ VD G R P G +L+ I
Sbjct: 12 VTSTDNRLYVGW-FGVIMIPTLLAATICFVIAFIAAPPVDIDGIREPVSGSLLYGNNI-I 69
Query: 116 LLAIF-----YGV-------ATSLASLLWSTGMGRICVFACAVGF-----CEWLRSV-LG 157
A+ G+ A SL L++ G ++ +F +G +W S LG
Sbjct: 70 TGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLLGASCYMGRQWELSYRLG 129
Query: 158 IGTWNAIGYAA 168
+ W + Y+A
Sbjct: 130 MRPWICVAYSA 140
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 303
Score = 27.7 bits (62), Expect = 2.2
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 15/108 (13%)
Query: 71 FFVGWLFGVGYFLAGLWWVREGIVDQIGSRFPFWGVVLFFVMISFLLAI---FYGVATSL 127
++G L + F +W+ GI W +F + F ++ S
Sbjct: 50 IYLGSLGVLSLFSGLMWFFTIGI---WFWYQAGWNPAVFLRDL-FFFSLEPPAPEYGLSF 105
Query: 128 ASLLWSTGMGRICVFACAVGF--CEWLRSV-----LGIGTWNAIGYAA 168
A+ L G+ I F W R+ LG+G A + +
Sbjct: 106 AAPLKEGGLWLIASF-FMFVAVWSWWGRTYLRAQALGMGKHTAWAFLS 152
>d1gkub3 e.10.1.1 (B:499-1054) Topoisomerase "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 556
Score = 27.6 bits (60), Expect = 2.7
Identities = 14/89 (15%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 296 IVDQPSILKKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEI--LASSNAKH 353
IV+ P+ ++I+ + ++ + + + + S G + L ++ H
Sbjct: 12 IVESPTKARQISRFFGKPSVKVLDGAVVYEIPMQKYVLM---VTASIGHVVDLITNRGFH 68
Query: 354 LVPF-AEYLPYRNILKKLNLDFYMFPLDY 381
V ++P +K+ Y F D
Sbjct: 69 GVLVNGRFVPVYASIKRCRDCGYQFTEDR 97
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum
[TaxId: 1050]}
Length = 318
Score = 27.4 bits (61), Expect = 2.7
Identities = 19/107 (17%), Positives = 32/107 (29%), Gaps = 14/107 (13%)
Query: 71 FFVGWLFGVGYFLAGLWWVREGIVDQIGSRFPFWGVVLFFVMISFLLAIF---YGVATSL 127
++G G GL + + + S W V F F L + +
Sbjct: 50 IYLGL-TGTLSIFFGLVAISIIGFNMLAS--VHWDVFQFLKHF-FWLGLEPPPPQYGLRI 105
Query: 128 ASLLWSTGMGRICVFACAVGFCEW-LRSV-----LGIGTWNAIGYAA 168
L G I + W +R+ LG+ + +AA
Sbjct: 106 PPL-SEGGWWLIAGLFLTLSILLWWVRTYKRAEALGMSQHLSWAFAA 151
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas
viridis [TaxId: 1079]}
Length = 323
Score = 27.0 bits (60), Expect = 3.9
Identities = 25/136 (18%), Positives = 39/136 (28%), Gaps = 46/136 (33%)
Query: 66 RVGSSFFVGWLFGVGYFLAGLWWVREGIVDQIGSRFPFWGVV-LFFVMISFLLAIFYGVA 124
RVG F+ WL +G G ++ G+ F + L+ I + +A
Sbjct: 28 RVGKPFYSYWLGKIGDAQIGPIYL------------GASGIAAFAFGSTAILI-ILFNMA 74
Query: 125 TS-----------LASL---------------LWSTGMGRICVFACAVGFCEW-LRSV-- 155
L L G + + W +R
Sbjct: 75 AEVHFDPLQFFRQFFWLGLYPPKAQYGMGIPPLHDGGWWLMAGLFMTLSLGSWWIRVYSR 134
Query: 156 ---LGIGTWNAIGYAA 168
LG+GT A +AA
Sbjct: 135 ARALGLGTHIAWNFAA 150
>d2axtd1 f.26.1.1 (D:13-352) Photosystem II reaction center d2
protein PsbD2 {Thermosynechococcus elongatus [TaxId:
146786]}
Length = 340
Score = 26.7 bits (59), Expect = 4.5
Identities = 21/107 (19%), Positives = 31/107 (28%), Gaps = 13/107 (12%)
Query: 72 FVGWLFGVGYFLAGLWWVREGIVD--QIGSRFPFWGVVLFFVMISFLLAIFYGVATSLAS 129
GWL G W G+ G F V + L + +G
Sbjct: 33 LGGWLTG---TTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDF 89
Query: 130 LLWSTGMGR---ICVFACAVGFCEWLRSV-----LGIGTWNAIGYAA 168
W G I + LR +G+ +NAI ++A
Sbjct: 90 TRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSA 136
>d1i7da_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli
[TaxId: 562]}
Length = 620
Score = 26.9 bits (58), Expect = 4.5
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 19/87 (21%)
Query: 296 IVDQPSILKKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLV 355
I ++PS+ + IA VL + H +I G+++ HL+
Sbjct: 5 IAEKPSLARAIADVL-----------------PKPHRKGDGFIECGNGQVVTWC-IGHLL 46
Query: 356 PFAEYLPYRNILKKLNL-DFYMFPLDY 381
A+ Y + + NL D + P +
Sbjct: 47 EQAQPDAYDSRYARWNLADLPIVPEKW 73
>d1uf5a_ d.160.1.2 (A:) N-carbamoyl-D-aminoacid amidohydrolase
{Agrobacterium sp. [TaxId: 361]}
Length = 303
Score = 26.6 bits (57), Expect = 5.2
Identities = 38/284 (13%), Positives = 73/284 (25%), Gaps = 37/284 (13%)
Query: 245 IRIVQPGINP-AIKEDREKILERYLSLTALPVSAG-------EL--------EPVIIVWA 288
+ + Q P A E RE+++ R L + S G EL
Sbjct: 6 LAVGQ--QGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAE 63
Query: 289 YLPFPFSIVDQPSILKKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILAS 348
F + + P + ++ +G + G + + +++ G+I+
Sbjct: 64 LDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGK 123
Query: 349 SNAKHLVPFAEYLPYRNILKKLNLDFYMFPLDYSSSDISPLLGLSEKLRLYPLLFSDALF 408
HL EY YR + Y P D + +A
Sbjct: 124 YRKIHLPGHKEYEAYRPF--QHLEKRYFEPGDLGFPVYDVDAAKMGMFIANDRRWPEAWR 181
Query: 409 HQDINNLE---NVSAILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNN------ 459
+ E T + A
Sbjct: 182 VMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGMEEN 241
Query: 460 ----GVSAFLDERGQIISSVYADRG----ASIDMHFQPKVRDSF 495
G S + G+I++ A++D+ ++R+
Sbjct: 242 CMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHI 285
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 250
Score = 26.4 bits (57), Expect = 5.9
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 245 IRIVQPGINPAIKEDREKILERYLS 269
I+ + PG K+D +++L Y+S
Sbjct: 221 IKALLPGHGLIWKKDPQRLLNHYVS 245
>d1jnra3 d.168.1.1 (A:257-401) Adenylylsulfate reductase A subunit
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 145
Score = 25.9 bits (57), Expect = 7.7
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 337 YIINSKGEILASSNAKHLVPFAEY 360
N+ GE + A L + Y
Sbjct: 27 KAKNAYGEEYIKTRAAELEKYKPY 50
>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS),
large subunit PreATP-grasp domains {Escherichia coli
[TaxId: 562]}
Length = 127
Score = 25.6 bits (56), Expect = 8.9
Identities = 9/40 (22%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 230 EDSKSSLKFEKISPVIR--IVQPGINPAIKEDREKILERY 267
E + ++ E+ V+ Q +N A++ +R+ +LE +
Sbjct: 72 EVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEF 111
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.143 0.438
Gapped
Lambda K H
0.267 0.0621 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,976,152
Number of extensions: 93700
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 36
Length of query: 518
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 429
Effective length of database: 1,185,626
Effective search space: 508633554
Effective search space used: 508633554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.2 bits)