BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780425|ref|YP_003064838.1| apolipoprotein
N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(518 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 518
Score = 1034 bits (2674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/518 (100%), Positives = 518/518 (100%)
Query: 1 MGNIAGKVMLLSGFRRCFIAILAGVIGSFSMPSSDLFLSSFVSFTLLIWLLDGISSNLGR 60
MGNIAGKVMLLSGFRRCFIAILAGVIGSFSMPSSDLFLSSFVSFTLLIWLLDGISSNLGR
Sbjct: 1 MGNIAGKVMLLSGFRRCFIAILAGVIGSFSMPSSDLFLSSFVSFTLLIWLLDGISSNLGR 60
Query: 61 MSAISRVGSSFFVGWLFGVGYFLAGLWWVREGIVDQIGSRFPFWGVVLFFVMISFLLAIF 120
MSAISRVGSSFFVGWLFGVGYFLAGLWWVREGIVDQIGSRFPFWGVVLFFVMISFLLAIF
Sbjct: 61 MSAISRVGSSFFVGWLFGVGYFLAGLWWVREGIVDQIGSRFPFWGVVLFFVMISFLLAIF 120
Query: 121 YGVATSLASLLWSTGMGRICVFACAVGFCEWLRSVLGIGTWNAIGYAAMPIPVMMQSVHW 180
YGVATSLASLLWSTGMGRICVFACAVGFCEWLRSVLGIGTWNAIGYAAMPIPVMMQSVHW
Sbjct: 121 YGVATSLASLLWSTGMGRICVFACAVGFCEWLRSVLGIGTWNAIGYAAMPIPVMMQSVHW 180
Query: 181 IGLFGMNALSVFCFASPALFGTRRDVNIGIILSSTLLILHIAYGWWILTEDSKSSLKFEK 240
IGLFGMNALSVFCFASPALFGTRRDVNIGIILSSTLLILHIAYGWWILTEDSKSSLKFEK
Sbjct: 181 IGLFGMNALSVFCFASPALFGTRRDVNIGIILSSTLLILHIAYGWWILTEDSKSSLKFEK 240
Query: 241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQP 300
ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQP
Sbjct: 241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQP 300
Query: 301 SILKKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEY 360
SILKKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEY
Sbjct: 301 SILKKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEY 360
Query: 361 LPYRNILKKLNLDFYMFPLDYSSSDISPLLGLSEKLRLYPLLFSDALFHQDINNLENVSA 420
LPYRNILKKLNLDFYMFPLDYSSSDISPLLGLSEKLRLYPLLFSDALFHQDINNLENVSA
Sbjct: 361 LPYRNILKKLNLDFYMFPLDYSSSDISPLLGLSEKLRLYPLLFSDALFHQDINNLENVSA 420
Query: 421 ILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGVSAFLDERGQIISSVYADRG 480
ILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGVSAFLDERGQIISSVYADRG
Sbjct: 421 ILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGVSAFLDERGQIISSVYADRG 480
Query: 481 ASIDMHFQPKVRDSFRSSIQMRVFWIIEFILLILAVIV 518
ASIDMHFQPKVRDSFRSSIQMRVFWIIEFILLILAVIV
Sbjct: 481 ASIDMHFQPKVRDSFRSSIQMRVFWIIEFILLILAVIV 518
>gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1162
Score = 25.4 bits (54), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 433 SGTDHSFRYAQIQAVEIGLPLI 454
+G HS +A++ A EIG PL+
Sbjct: 755 NGISHSVEHARLIACEIGFPLL 776
>gi|254780289|ref|YP_003064702.1| RNA polymerase sigma factor RpoD [Candidatus Liberibacter asiaticus
str. psy62]
Length = 682
Score = 25.0 bits (53), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 6/44 (13%)
Query: 57 NLGRMSAISRVGSSFFVGWLFGVGYFLAGLWWVREGIVDQIGSR 100
N+G M A + W G + +WWV++ I I +
Sbjct: 478 NIGLMKAAEKFD------WCLGYKFSTYAMWWVKQAITRSIADQ 515
>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 371
Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 408 FHQDINNLENVSAILNIIDDS 428
F QDINN+E +++ IIDD
Sbjct: 101 FAQDINNIERSTSLSIIIDDQ 121
>gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62]
Length = 723
Score = 25.0 bits (53), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 406 ALFHQDINNLENVSAILNIIDDS 428
A H D + +VS+I N+IDDS
Sbjct: 641 ATDHHDAGVVSDVSSIQNVIDDS 663
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 23.5 bits (49), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 368 KKLNLDFYMFPLDYSSSDISPLLG-----LSEKLRLYPLLFSDALFHQDINNLENVSAIL 422
+ L +D + LD +S + P+ L KLR + L S + D+NNL + +
Sbjct: 163 RALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR-HSLGLSVYMITHDLNNLISTCNRV 221
Query: 423 NIIDDSGFMGSGT 435
+I G M GT
Sbjct: 222 AVIQKKGIMKEGT 234
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.328 0.143 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 332,366
Number of Sequences: 1233
Number of extensions: 14408
Number of successful extensions: 46
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 9
length of query: 518
length of database: 328,796
effective HSP length: 78
effective length of query: 440
effective length of database: 232,622
effective search space: 102353680
effective search space used: 102353680
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 40 (20.0 bits)