BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] (518 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780425|ref|YP_003064838.1| apolipoprotein N-acyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 518 Score = 1034 bits (2674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 518/518 (100%), Positives = 518/518 (100%) Query: 1 MGNIAGKVMLLSGFRRCFIAILAGVIGSFSMPSSDLFLSSFVSFTLLIWLLDGISSNLGR 60 MGNIAGKVMLLSGFRRCFIAILAGVIGSFSMPSSDLFLSSFVSFTLLIWLLDGISSNLGR Sbjct: 1 MGNIAGKVMLLSGFRRCFIAILAGVIGSFSMPSSDLFLSSFVSFTLLIWLLDGISSNLGR 60 Query: 61 MSAISRVGSSFFVGWLFGVGYFLAGLWWVREGIVDQIGSRFPFWGVVLFFVMISFLLAIF 120 MSAISRVGSSFFVGWLFGVGYFLAGLWWVREGIVDQIGSRFPFWGVVLFFVMISFLLAIF Sbjct: 61 MSAISRVGSSFFVGWLFGVGYFLAGLWWVREGIVDQIGSRFPFWGVVLFFVMISFLLAIF 120 Query: 121 YGVATSLASLLWSTGMGRICVFACAVGFCEWLRSVLGIGTWNAIGYAAMPIPVMMQSVHW 180 YGVATSLASLLWSTGMGRICVFACAVGFCEWLRSVLGIGTWNAIGYAAMPIPVMMQSVHW Sbjct: 121 YGVATSLASLLWSTGMGRICVFACAVGFCEWLRSVLGIGTWNAIGYAAMPIPVMMQSVHW 180 Query: 181 IGLFGMNALSVFCFASPALFGTRRDVNIGIILSSTLLILHIAYGWWILTEDSKSSLKFEK 240 IGLFGMNALSVFCFASPALFGTRRDVNIGIILSSTLLILHIAYGWWILTEDSKSSLKFEK Sbjct: 181 IGLFGMNALSVFCFASPALFGTRRDVNIGIILSSTLLILHIAYGWWILTEDSKSSLKFEK 240 Query: 241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQP 300 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQP Sbjct: 241 ISPVIRIVQPGINPAIKEDREKILERYLSLTALPVSAGELEPVIIVWAYLPFPFSIVDQP 300 Query: 301 SILKKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEY 360 SILKKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEY Sbjct: 301 SILKKIASVLKINQLLIVGSMRKELVDGRSHFYKSIYIINSKGEILASSNAKHLVPFAEY 360 Query: 361 LPYRNILKKLNLDFYMFPLDYSSSDISPLLGLSEKLRLYPLLFSDALFHQDINNLENVSA 420 LPYRNILKKLNLDFYMFPLDYSSSDISPLLGLSEKLRLYPLLFSDALFHQDINNLENVSA Sbjct: 361 LPYRNILKKLNLDFYMFPLDYSSSDISPLLGLSEKLRLYPLLFSDALFHQDINNLENVSA 420 Query: 421 ILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGVSAFLDERGQIISSVYADRG 480 ILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGVSAFLDERGQIISSVYADRG Sbjct: 421 ILNIIDDSGFMGSGTDHSFRYAQIQAVEIGLPLIRATNNGVSAFLDERGQIISSVYADRG 480 Query: 481 ASIDMHFQPKVRDSFRSSIQMRVFWIIEFILLILAVIV 518 ASIDMHFQPKVRDSFRSSIQMRVFWIIEFILLILAVIV Sbjct: 481 ASIDMHFQPKVRDSFRSSIQMRVFWIIEFILLILAVIV 518 >gi|254780439|ref|YP_003064852.1| carbamoyl phosphate synthase large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 1162 Score = 25.4 bits (54), Expect = 2.4, Method: Compositional matrix adjust. Identities = 10/22 (45%), Positives = 15/22 (68%) Query: 433 SGTDHSFRYAQIQAVEIGLPLI 454 +G HS +A++ A EIG PL+ Sbjct: 755 NGISHSVEHARLIACEIGFPLL 776 >gi|254780289|ref|YP_003064702.1| RNA polymerase sigma factor RpoD [Candidatus Liberibacter asiaticus str. psy62] Length = 682 Score = 25.0 bits (53), Expect = 2.8, Method: Compositional matrix adjust. Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 6/44 (13%) Query: 57 NLGRMSAISRVGSSFFVGWLFGVGYFLAGLWWVREGIVDQIGSR 100 N+G M A + W G + +WWV++ I I + Sbjct: 478 NIGLMKAAEKFD------WCLGYKFSTYAMWWVKQAITRSIADQ 515 >gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter asiaticus str. psy62] Length = 371 Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust. Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 408 FHQDINNLENVSAILNIIDDS 428 F QDINN+E +++ IIDD Sbjct: 101 FAQDINNIERSTSLSIIIDDQ 121 >gi|254780751|ref|YP_003065164.1| ribonuclease E [Candidatus Liberibacter asiaticus str. psy62] Length = 723 Score = 25.0 bits (53), Expect = 3.3, Method: Compositional matrix adjust. Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 406 ALFHQDINNLENVSAILNIIDDS 428 A H D + +VS+I N+IDDS Sbjct: 641 ATDHHDAGVVSDVSSIQNVIDDS 663 >gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 23.5 bits (49), Expect = 8.7, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%) Query: 368 KKLNLDFYMFPLDYSSSDISPLLG-----LSEKLRLYPLLFSDALFHQDINNLENVSAIL 422 + L +D + LD +S + P+ L KLR + L S + D+NNL + + Sbjct: 163 RALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLR-HSLGLSVYMITHDLNNLISTCNRV 221 Query: 423 NIIDDSGFMGSGT 435 +I G M GT Sbjct: 222 AVIQKKGIMKEGT 234 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.328 0.143 0.438 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 332,366 Number of Sequences: 1233 Number of extensions: 14408 Number of successful extensions: 46 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 40 Number of HSP's gapped (non-prelim): 9 length of query: 518 length of database: 328,796 effective HSP length: 78 effective length of query: 440 effective length of database: 232,622 effective search space: 102353680 effective search space used: 102353680 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 40 (20.0 bits)