HHsearch alignment for GI: 254780426 and conserved domain: TIGR03520
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=100.00 E-value=0 Score=511.35 Aligned_cols=300 Identities=22% Similarity=0.390 Sum_probs=271.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHHHHHH--HHHHHHHHCCCCCC-CCHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 766799887655555544432035---687530268998--99998763378888-899999999997997689898999
Q gi|254780426|r 2 MSDFKINSSEHPKEKNEGIDLSPS---ISKTSVPAFWTR--TIRALCKTWKLMKL-SHHKGIRLPRIDASLEGIFSETEK 75 (320)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~p~---l~~i~~P~vw~~--~~~~~~~~~~~~~~-~~~eel~~l~~~~~~~G~i~~~E~ 75 (320)
T Consensus 101 fGEiiPK~iA~~~~e~ia~~~a~~l~~~~~l~~Pl~~~l~~~~~~l~~~~g~~~~~~s~eel~~~i~~~~~~g~~~-eE~ 179 (408)
T TIGR03520 101 FGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQKSNISVDQLSQALELTDEEDTTK-EEQ 179 (408)
T ss_pred HHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCH-HHH
T ss_conf 4110106788769899999999999999999999999999999988651156789899999999998540348778-999
Q ss_pred HHHHHHHCCCCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCC
Q ss_conf 99998730477576413120012999863010367789798659817998418866422410299999876622356432
Q gi|254780426|r 76 EIFNNILRFRKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNN 155 (320)
Q Consensus 76 ~ii~~vl~l~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~ 155 (320)
T Consensus 180 ~~i~~vl~l~~~~v~eiMtPr~~v~~l~~~~~~~e~~~~~~~~~~SR~PV~~~~~D~iiGiv~~kDll~~~~~------- 252 (408)
T TIGR03520 180 KILQGIVSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK------- 252 (408)
T ss_pred HHHHHHHCCCCCEEHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEEHHHHHHHHHC-------
T ss_conf 9999982759989034235457958840644389999999857987222665898761799779899878736-------
Q ss_pred CCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCC
Q ss_conf 23334576788515657971788512323432013565116540776620466758899998742221000000001246
Q gi|254780426|r 156 INLNIQLSESNLIKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAV 235 (320)
Q Consensus 156 ~~~~~~~~l~~~~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~ 235 (320)
T Consensus 253 ----~~~~~~~~~r~~~~Vpe~~~~~~lL~~~~~~~~~~AiVvDEyG~~~GiVTlEDilEeivGei~DE~d~~~~~~~~~ 328 (408)
T TIGR03520 253 ----KNFDWQSLLREPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFDDEDLIYSKI 328 (408)
T ss_pred ----CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCEEEC
T ss_conf ----9998899863214899977889999999863874899998999878998889989999588868677665550873
Q ss_pred CCCEEEEECCCCHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHCCCCCCCCEEEEECCEEEEEEEECCCEEEEEEEEE
Q ss_conf 7733783045359999998288888777-746743179999998423473798899758959999995188789999996
Q gi|254780426|r 236 SDNTFIVDARTDLEELAKIIGTDCNCLK-GEQDVDSLGGLIFSVLDRIPARGEVVLEIPGFEIVILDADVRCVRRVRIRR 314 (320)
Q Consensus 236 ~~g~~~v~G~~~l~~l~~~l~~~l~~~~-~~~~~~Ti~G~i~~~l~~iP~~Ge~v~~~~g~~f~V~~~~~~rI~~v~v~~ 314 (320)
T Consensus 329 ~~~~~~v~G~~~l~dl~~~l~~~~~~~~~~~~~~~Tl~G~il~~l~~iP~~ge~v-~~~~~~f~V~~~~~~rI~~V~vt~ 407 (408)
T TIGR03520 329 DDNNYVFEGKTSLKDFYKILKLEEDMFDEVKGEAETLAGFLLEISGGFPKKGEKI-TFENFEFTIEAMDKKRIKQVKVTI 407 (408)
T ss_pred CCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCEE-EECCEEEEEEEEECCEEEEEEEEE
T ss_conf 7986999802699999998589988765657897708999999858689999999-999999999984078677999997