HHsearch alignment for GI: 254780426 and conserved domain: TIGR03520
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=93.97 E-value=0.3 Score=28.04 Aligned_cols=59 Identities=15% Similarity=0.221 Sum_probs=49.5
Q ss_pred CCCCHHHHCCC---CEEECCCCCHHHHHHHHHCCCCCCEEEEECC-CCCEEEEEHHHHHHHHH
Q ss_conf 45767885156---5797178851232343201356511654077-66204667588999987
Q gi|254780426|r 160 IQLSESNLIKN---ILFVPSSMLVSDLLTNIQESRIRMALVIDEH-GGTDGLVSYEDIVSVLM 218 (320)
Q Consensus 160 ~~~~l~~~~r~---~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~-G~~~GiVTleDIle~iv 218 (320)
T Consensus 189 ~~~~v~eiMtPr~~v~~l~~~~~~~e~~~~~~~~~~SR~PV~~~~~D~iiGiv~~kDll~~~~ 251 (408)
T TIGR03520 189 GNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLN 251 (408)
T ss_pred CCCEEHHCCCCHHHEEEEECCCHHHHHHHHHHHCCCCCCEEECCCCCCEEEEEEHHHHHHHHH
T ss_conf 998903423545795884064438999999985798722266589876179977989987873