HHsearch alignment for GI: 254780426 and conserved domain: cd04590
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.93 E-value=4.3e-26 Score=190.83 Aligned_cols=111 Identities=37% Similarity=0.601 Sum_probs=102.5
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCEEECC
Q ss_conf 12999863010367789798659817998418866422410299999876622356432233345767885156579717
Q gi|254780426|r 97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKNILFVPS 176 (320)
Q Consensus 97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r~~~~Vpe 176 (320)
T Consensus 1 ~~v~~i~~~~s~~e~~~~~~~~~~sr~PV~~~~~~~ivGil~~kDll~~~~~~~---------~~~~~~~~~~~~~~v~~ 71 (111)
T cd04590 1 TDIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGE---------EDLDLRDLLRPPLFVPE 71 (111)
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEHHHHHHHHCCC---------CCCCHHHHCCCCEECCH
T ss_conf 968999699999999999997799779999547887789999114456665278---------76407764044222255
Q ss_pred CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf 8851232343201356511654077662046675889999
Q gi|254780426|r 177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV 216 (320)
Q Consensus 177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ 216 (320)
T Consensus 72 ~~~l~~~l~~~~~~~~~~a~VvDe~G~~~GivT~~DilE~ 111 (111)
T cd04590 72 STPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILEE 111 (111)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEHHHHHCC
T ss_conf 6658899984355496799999699999999980485377