HHsearch alignment for GI: 254780426 and conserved domain: cd04599
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=1.9e-12 Score=101.46 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=90.3
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf 29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r 98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS 176 (320)
Q Consensus 98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe 176 (320)
T Consensus 2 d~vtv~p~~tv~ea~~lM~~~~i~~lpVv~~~--~lvGivT~~Dl~~~-------------~~~~~v~~iMt~~~itv~~ 66 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVEDG--KLVGIITSRDVRRA-------------HPNRLVADAMTREVVTISP 66 (105)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEECHHHHCC-------------CCCCCHHHHCCCCCEEECC
T ss_conf 98996894989999999986399889999999--99899981053127-------------8887968850279899979
Q ss_pred CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf 8851232343201356511654077662046675889999
Q gi|254780426|r 177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV 216 (320)
Q Consensus 177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ 216 (320)
T Consensus 67 ~~~l~~a~~~M~~~~i~~lpVvd~-g~lvGiiT~~Divre 105 (105)
T cd04599 67 EASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIALE 105 (105)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEECHHHCCC
T ss_conf 491999999779859979999989-999999994586158