>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

Probab=97.68  E-value=3.5e-05  Score=53.79  Aligned_cols=55  Identities=16%  Similarity=0.285  Sum_probs=37.1

Q ss_pred             CCEEEHHEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHH
Q ss_conf             77576413120012999863010367789798659817998418866422410299999
Q gi|254780426|r   85 RKIRIDDIMISRVSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVI  143 (320)
Q Consensus        85 ~~~~v~diMtPr~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll  143 (320)
T Consensus        49 ~~~~v~~iMt~--~~itv~~~~~l~~a~~~M~~~~i~~lpVvd~g--~lvGiiT~~Div  103 (105)
T cd04599          49 PNRLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRER--KLVGIITKGTIA  103 (105)
T ss_pred             CCCCHHHHCCC--CCEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEECHHHC
T ss_conf             88796885027--98999794919999997798599799999899--999999945861