>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

Probab=98.07  E-value=2.3e-05  Score=54.99  Aligned_cols=52  Identities=17%  Similarity=0.303  Sum_probs=47.8

Q ss_pred             CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHH
Q ss_conf             5657971788512323432013565116540776620466758899998742
Q gi|254780426|r  169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRD  220 (320)
Q Consensus       169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGe  220 (320)
T Consensus         2 rdvvtv~~~~tl~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dll~~~~~~   53 (124)
T cd04600           2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPD   53 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEHHHHHHHHHCC
T ss_conf             8969989939799999999972997899995698088885699999877504