HHsearch alignment for GI: 254780426 and conserved domain: cd04602
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.36 E-value=2.6e-12 Score=100.58 Aligned_cols=107 Identities=19% Similarity=0.265 Sum_probs=89.1
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCC--CCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCC---C
Q ss_conf 129998630103677897986598179984188--66422410299999876622356432233345767885156---5
Q gi|254780426|r 97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNS--LDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIKN---I 171 (320)
Q Consensus 97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~--~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r~---~ 171 (320)
T Consensus 2 ~dPvtv~p~~tv~ea~~lm~~~~~~~~pVvd~g~~~~klvGIvT~rDi~~~------------~~~~~~v~~iMt~~~~~ 69 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL------------TDSETPLSEVMTPREVL 69 (114)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEEEEEEEHHHHHHC------------CCCCCCCCCEEECCCEE
T ss_conf 889997998999999999997198779999657768969999997895235------------07676563516527668
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf 79717885123234320135651165407766204667588999
Q gi|254780426|r 172 LFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS 215 (320)
Q Consensus 172 ~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle 215 (320)
T Consensus 70 i~~~~~~~l~ea~~~m~~~~i~~LPVVd~~g~LvGiIT~~Di~k 113 (114)
T cd04602 70 VVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred EEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEECHHHCC
T ss_conf 99479878999999999749667819978996999999244036