HHsearch alignment for GI: 254780426 and conserved domain: cd04607

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.76  E-value=0.00011  Score=50.45  Aligned_cols=82  Identities=24%  Similarity=0.393  Sum_probs=52.9

Q ss_pred             CCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCCHH
Q ss_conf             65797178851232343201356511654077662046675889999874222100000000124677337830453599
Q gi|254780426|r  170 NILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTDLE  249 (320)
Q Consensus       170 ~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~l~  249 (320)
T Consensus         3 kpi~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~l~GiiT~~Di~r~l~~~~~~--~~~v~~im--~~~~~~i~~~~~~~   78 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLSL--DDPVSEVM--NRNPITAKVGSSRE   78 (113)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEECHHHHHHHHCCCCC--CCCHHHHH--CCEEEEEECCCCHH
T ss_conf             688969949899999999875997899997999599999872776687628984--56156752--12129998799899


Q ss_pred             HHHHHH
Q ss_conf             999982
Q gi|254780426|r  250 ELAKII  255 (320)
Q Consensus       250 ~l~~~l  255 (320)
T Consensus        79 ~a~~~m   84 (113)
T cd04607          79 EILALM   84 (113)
T ss_pred             HHHHHH
T ss_conf             999999