HHsearch alignment for GI: 254780426 and conserved domain: cd04608
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.93 E-value=2.3e-05 Score=54.98 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=63.5
Q ss_pred CCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCC
Q ss_conf 15657971788512323432013565116540776620466758899998742221000000001246773378304535
Q gi|254780426|r 168 IKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTD 247 (320)
Q Consensus 168 ~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~ 247 (320)
T Consensus 1 l~~~vtv~p~~tv~~a~~~m~~~~i~~lPVvd~~g~~~G~vt~~~ll~~~~~~~~~~~~~V~~---vm~~~~~~v~~~~~ 77 (124)
T cd04608 1 LKAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSK---ALYKQFKRVNKNDT 77 (124)
T ss_pred CCCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCHHH---HHCCCCCCCCCCCC
T ss_conf 999979899890999999999849985689879996888887999999997389999982899---74465651479985
Q ss_pred HHHHHHHHC
Q ss_conf 999999828
Q gi|254780426|r 248 LEELAKIIG 256 (320)
Q Consensus 248 l~~l~~~l~ 256 (320)
T Consensus 78 l~~ls~~l~ 86 (124)
T cd04608 78 LGKLSRILE 86 (124)
T ss_pred HHHHHCCCC
T ss_conf 567310367