HHsearch alignment for GI: 254780426 and conserved domain: cd04608

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=97.93  E-value=2.3e-05  Score=54.98  Aligned_cols=86  Identities=19%  Similarity=0.262  Sum_probs=63.5

Q ss_pred             CCCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCCCCCEEEEECCCC
Q ss_conf             15657971788512323432013565116540776620466758899998742221000000001246773378304535
Q gi|254780426|r  168 IKNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAVSDNTFIVDARTD  247 (320)
Q Consensus       168 ~r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~~~g~~~v~G~~~  247 (320)
T Consensus         1 l~~~vtv~p~~tv~~a~~~m~~~~i~~lPVvd~~g~~~G~vt~~~ll~~~~~~~~~~~~~V~~---vm~~~~~~v~~~~~   77 (124)
T cd04608           1 LKAPVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSK---ALYKQFKRVNKNDT   77 (124)
T ss_pred             CCCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCHHH---HHCCCCCCCCCCCC
T ss_conf             999979899890999999999849985689879996888887999999997389999982899---74465651479985


Q ss_pred             HHHHHHHHC
Q ss_conf             999999828
Q gi|254780426|r  248 LEELAKIIG  256 (320)
Q Consensus       248 l~~l~~~l~  256 (320)
T Consensus        78 l~~ls~~l~   86 (124)
T cd04608          78 LGKLSRILE   86 (124)
T ss_pred             HHHHHCCCC
T ss_conf             567310367