HHsearch alignment for GI: 254780426 and conserved domain: cd04609

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.46  E-value=3.4e-13  Score=106.34  Aligned_cols=107  Identities=21%  Similarity=0.353  Sum_probs=90.1

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf             29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS  176 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe  176 (320)
T Consensus         2 dvvtv~p~~tl~~a~~~m~~~~i~~lpVvd~--~~lvGiit~~Di~~~~~~~~~~-------~~~~v~~iM~~~~~~v~~   72 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD--GRVVGSIDESDLLDALIEGKAK-------FSLPVREVMGEPLPTVDP   72 (110)
T ss_pred             CEEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEEHHHHHHHHHCCCCC-------CCCEEEEEEECCCEEECC
T ss_conf             8069999497999999999819988999989--9999999999999998638764-------687698456759459789


Q ss_pred             CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf             885123234320135651165407766204667588999
Q gi|254780426|r  177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS  215 (320)
Q Consensus       177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle  215 (320)
T Consensus        73 ~~~l~~~~~~~~~~--~~~~vV~~~g~lvGIvT~~Dil~  109 (110)
T cd04609          73 DAPIEELSELLDRG--NVAVVVDEGGKFVGIITRADLLK  109 (110)
T ss_pred             CCCHHHHHHHHHHC--CCCEEEECCCEEEEEEEHHHHHC
T ss_conf             89499999988767--98249961999999998368529