HHsearch alignment for GI: 254780426 and conserved domain: cd04613
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.11 E-value=1.5e-05 Score=56.32 Aligned_cols=83 Identities=23% Similarity=0.347 Sum_probs=52.8
Q ss_pred CCCEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHCCCCC-CCCEEEEECCCC
Q ss_conf 5657971788512323432013565116540776620466758899998742221000000001246-773378304535
Q gi|254780426|r 169 KNILFVPSSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSVLMRDITSEHHSKKSMISAV-SDNTFIVDARTD 247 (320)
Q Consensus 169 r~~~~Vpe~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ivGei~de~d~~~~~i~~~-~~g~~~v~G~~~ 247 (320)
T Consensus 1 rdvvtv~~~~tl~ea~~~m~~~~~~~~pVvd~~~~lvGiit~~Dl~~~l~~~~~----~~~~~v~~im~~~~~~v~~~~~ 76 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL----YDLVVASDIMTKPPVVVYPEDS 76 (114)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHHCCC----CCCCEEEHHCCCCCEEEECCCC
T ss_conf 997695890989999999986199789999289949999999999999970566----5572931203629659913678
Q ss_pred HHHHHHHH
Q ss_conf 99999982
Q gi|254780426|r 248 LEELAKII 255 (320)
Q Consensus 248 l~~l~~~l 255 (320)
T Consensus 77 l~~a~~~m 84 (114)
T cd04613 77 LEDALKKF 84 (114)
T ss_pred HHHHHHHH
T ss_conf 89999999