HHsearch alignment for GI: 254780426 and conserved domain: cd04615
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=1.9e-12 Score=101.37 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=95.9
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECCC
Q ss_conf 9998630103677897986598179984188664224102999998766223564322333457678851-565797178
Q gi|254780426|r 99 INAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPSS 177 (320)
Q Consensus 99 i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe~ 177 (320)
T Consensus 3 P~tv~~d~~l~~A~~~m~~~~~~~~pVvd~~~-~lvGivT~~Di~~~~~~~~~-------~~~~~v~~iMt~~~~ti~~~ 74 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDKK-RLVGIITRYDVLSYALESEE-------LKDAKVREVMNSPVITIDAN 74 (113)
T ss_pred CEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEEHHHHHHHHHHCCC-------CCCCCHHHHCCCCCEEEECC
T ss_conf 95989969999999999973997899994899-79999995999999980798-------24589999275697899089
Q ss_pred CCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf 85123234320135651165407766204667588999
Q gi|254780426|r 178 MLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS 215 (320)
Q Consensus 178 ~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle 215 (320)
T Consensus 75 ~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dilr 112 (113)
T cd04615 75 DSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred CCHHHHHHHHHHHCCEEEEEECCCCEEEEEEEHHHHHC
T ss_conf 93999999999749948999979993999999688326