HHsearch alignment for GI: 254780426 and conserved domain: cd04617
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.25 E-value=4.2e-11 Score=92.60 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=93.8
Q ss_pred EEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC---CCEEEC
Q ss_conf 99986301036778979865981799841886642241029999987662235643223334576788515---657971
Q gi|254780426|r 99 INAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIK---NILFVP 175 (320)
Q Consensus 99 i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r---~~~~Vp 175 (320)
T Consensus 3 Pvtv~~~~si~eA~~~M~~~~ig~l~VVD~~~-~LvGIiT~rDl~r~~~~~~~-------~~~~pV~~iMT~~P~vvt~~ 74 (118)
T cd04617 3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDEDG-DLVGVVSRKDLLKASIGGAD-------LQKVPVGVIMTRMPNITTTT 74 (118)
T ss_pred CEEECCCCCHHHHHHHHHHHCCCEEEEECCCC-CEEEEEEHHHHHHHHHCCCC-------CCCCCHHHHHCCCCCEEEEC
T ss_conf 97989969999999999983998799984999-59999878999999974898-------46782999857799719978
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEEECCC---CCEEEEEHHHHH
Q ss_conf 788512323432013565116540776---620466758899
Q gi|254780426|r 176 SSMLVSDLLTNIQESRIRMALVIDEHG---GTDGLVSYEDIV 214 (320)
Q Consensus 176 e~~~l~~lL~~m~~~~~~~aiVvDE~G---~~~GiVTleDIl 214 (320)
T Consensus 75 pd~~v~~A~~~M~~~~i~~LPVVd~~~~~~~vvGiIT~~Di~ 116 (118)
T cd04617 75 PEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT 116 (118)
T ss_pred CCCCHHHHHHHHHHCCCCEECEEECCCCCEEEEEEEECCCEE
T ss_conf 999399999999982999856794399740899999775150