HHsearch alignment for GI: 254780426 and conserved domain: cd04617

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.25  E-value=4.2e-11  Score=92.60  Aligned_cols=108  Identities=14%  Similarity=0.135  Sum_probs=93.8

Q ss_pred             EEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC---CCEEEC
Q ss_conf             99986301036778979865981799841886642241029999987662235643223334576788515---657971
Q gi|254780426|r   99 INAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLIK---NILFVP  175 (320)
Q Consensus        99 i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~r---~~~~Vp  175 (320)
T Consensus         3 Pvtv~~~~si~eA~~~M~~~~ig~l~VVD~~~-~LvGIiT~rDl~r~~~~~~~-------~~~~pV~~iMT~~P~vvt~~   74 (118)
T cd04617           3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDEDG-DLVGVVSRKDLLKASIGGAD-------LQKVPVGVIMTRMPNITTTT   74 (118)
T ss_pred             CEEECCCCCHHHHHHHHHHHCCCEEEEECCCC-CEEEEEEHHHHHHHHHCCCC-------CCCCCHHHHHCCCCCEEEEC
T ss_conf             97989969999999999983998799984999-59999878999999974898-------46782999857799719978


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCC---CCEEEEEHHHHH
Q ss_conf             788512323432013565116540776---620466758899
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHG---GTDGLVSYEDIV  214 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G---~~~GiVTleDIl  214 (320)
T Consensus        75 pd~~v~~A~~~M~~~~i~~LPVVd~~~~~~~vvGiIT~~Di~  116 (118)
T cd04617          75 PEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNIT  116 (118)
T ss_pred             CCCCHHHHHHHHHHCCCCEECEEECCCCCEEEEEEEECCCEE
T ss_conf             999399999999982999856794399740899999775150