HHsearch alignment for GI: 254780426 and conserved domain: cd04620
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.36 E-value=6.7e-12 Score=97.85 Aligned_cols=110 Identities=19% Similarity=0.213 Sum_probs=93.5
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf 29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r 98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS 176 (320)
Q Consensus 98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe 176 (320)
T Consensus 2 ~pitv~pd~tv~ea~~~M~~~~~~~~~vV~~~~-~lvGIvT~~Di~r~~~~~~~-------~~~~~v~~vMt~~~itv~~ 73 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEKG-RLLGIFTERDIVRLTAIGKD-------LSDLPIGEVMTQPVVTLQE 73 (115)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCC-EEEEEEEHHHHHHHHHCCCC-------CCCCCHHHHCCCCCEEECC
T ss_conf 699969919999999999983994699993799-29999986999999985998-------1348988963689679838
Q ss_pred CC--CHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHH
Q ss_conf 88--5123234320135651165407766204667588999
Q gi|254780426|r 177 SM--LVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVS 215 (320)
Q Consensus 177 ~~--~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle 215 (320)
T Consensus 74 ~~~~~i~~a~~~M~~~~i~~lpVvd~~g~lvGiit~~Dilk 114 (115)
T cd04620 74 SEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred CCCCCHHHHHHHHHHCCEEEEEEECCCCEEEEEEEHHHCCC
T ss_conf 99726999999987559528999957997999999256232