HHsearch alignment for GI: 254780426 and conserved domain: cd04622

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.49  E-value=1.9e-13  Score=108.01  Aligned_cols=110  Identities=21%  Similarity=0.318  Sum_probs=95.3

Q ss_pred             EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHH-HHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             2999863010367789798659817998418866422410299999-8766223564322333457678851-5657971
Q gi|254780426|r   98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVI-SYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll-~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
T Consensus         2 ~~vti~~~~tl~~a~~~m~~~~~~~v~V~d~--~~~vGiiT~~Di~~~~~~~~~~-------~~~~~v~~iM~~~~i~v~   72 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRD-------PDTTTVGDVMTRGVVTVT   72 (113)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEECHHHHHHHHHCCCC-------HHHCCHHHHHCCCCEEEE
T ss_conf             9779689398999999999729988999989--9999999632788999973998-------200776786415767998


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             78851232343201356511654077662046675889999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
T Consensus        73 ~~~~l~~a~~~m~~~~i~~lpVvd~~~~~vGiIt~~Dilra  113 (113)
T cd04622          73 EDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLARA  113 (113)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf             89987999999985796589999089989999997995477