HHsearch alignment for GI: 254780426 and conserved domain: cd04623
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=6.2e-13 Score=104.61 Aligned_cols=111 Identities=23% Similarity=0.321 Sum_probs=96.2
Q ss_pred EEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEECC
Q ss_conf 29998630103677897986598179984188664224102999998766223564322333457678851-56579717
Q gi|254780426|r 98 SINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVPS 176 (320)
Q Consensus 98 ~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vpe 176 (320)
T Consensus 2 ~vvti~~~~tl~ea~~~m~~~~~~~l~Vvd~~-~~l~Giit~~Di~~~~~~~~~~------~~~~~V~~iM~~~~~~v~~ 74 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGAS------ALDTPVSEIMTRNVITVTP 74 (113)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEHHHHHHHHHHCCCC------HHHCHHHHHCCCEEEEEEC
T ss_conf 97696893979999999997399889999089-8299999768999999864998------4664012312110289916
Q ss_pred CCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf 8851232343201356511654077662046675889999
Q gi|254780426|r 177 SMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV 216 (320)
Q Consensus 177 ~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ 216 (320)
T Consensus 75 ~~~l~~a~~~m~~~~i~~lpV~d~-~~lvGiit~~Dllra 113 (113)
T cd04623 75 DDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVKA 113 (113)
T ss_pred CCCHHHHHHHHHHCCCEEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf 991999999999769259999999-999999997996469