HHsearch alignment for GI: 254780426 and conserved domain: cd04625
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=1.6e-12 Score=101.99 Aligned_cols=111 Identities=15% Similarity=0.257 Sum_probs=96.7
Q ss_pred CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf 129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r 97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP 175 (320)
Q Consensus 97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp 175 (320)
T Consensus 1 ~~V~Tv~pd~~l~eA~~~M~~~~i~~lvV~~~g--~lvGIiT~rDi~~~~~~~~~~------~~~~~V~~iMt~~~~tv~ 72 (112)
T cd04625 1 DTIYTVAPETLLSEAVATMAEQDLGSLVVMERG--ELVGLLTFREVLQAMAQHGAG------VLDTTVRAIMNPEPIVAS 72 (112)
T ss_pred CCEEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEEHHHHHHHHHHCCCC------CCCCCHHHHEECCCEEEC
T ss_conf 947998995979999999987499879995799--999999879999999970998------011708883348977998
Q ss_pred CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf 78851232343201356511654077662046675889999
Q gi|254780426|r 176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV 216 (320)
Q Consensus 176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~ 216 (320)
T Consensus 73 ~~~~i~~a~~~M~~~~i~~lpVvd~-g~lvGiit~~Di~rA 112 (112)
T cd04625 73 PDDSIDEVRRLMVERHLRYLPVLDG-GTLLGVISFHDVAKA 112 (112)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf 9996999999768669769999999-999999997996359