HHsearch alignment for GI: 254780426 and conserved domain: cd04625

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42  E-value=1.6e-12  Score=101.99  Aligned_cols=111  Identities=15%  Similarity=0.257  Sum_probs=96.7

Q ss_pred             CEEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHC-CCCEEEC
Q ss_conf             129998630103677897986598179984188664224102999998766223564322333457678851-5657971
Q gi|254780426|r   97 VSINAVEDKATVYEAMLMFEKYGRSWMPVYKNSLDNPRGMVHMRDVISYISHMYAKTNNINLNIQLSESNLI-KNILFVP  175 (320)
Q Consensus        97 ~~i~~i~~~~~~~e~~~~i~~~~~sR~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~~~~~~~~~~l~~~~-r~~~~Vp  175 (320)
T Consensus         1 ~~V~Tv~pd~~l~eA~~~M~~~~i~~lvV~~~g--~lvGIiT~rDi~~~~~~~~~~------~~~~~V~~iMt~~~~tv~   72 (112)
T cd04625           1 DTIYTVAPETLLSEAVATMAEQDLGSLVVMERG--ELVGLLTFREVLQAMAQHGAG------VLDTTVRAIMNPEPIVAS   72 (112)
T ss_pred             CCEEEECCCCCHHHHHHHHHHCCCCEEEEEECC--EEEEEEEHHHHHHHHHHCCCC------CCCCCHHHHEECCCEEEC
T ss_conf             947998995979999999987499879995799--999999879999999970998------011708883348977998


Q ss_pred             CCCCHHHHHHHHHCCCCCCEEEEECCCCCEEEEEHHHHHHH
Q ss_conf             78851232343201356511654077662046675889999
Q gi|254780426|r  176 SSMLVSDLLTNIQESRIRMALVIDEHGGTDGLVSYEDIVSV  216 (320)
Q Consensus       176 e~~~l~~lL~~m~~~~~~~aiVvDE~G~~~GiVTleDIle~  216 (320)
T Consensus        73 ~~~~i~~a~~~M~~~~i~~lpVvd~-g~lvGiit~~Di~rA  112 (112)
T cd04625          73 PDDSIDEVRRLMVERHLRYLPVLDG-GTLLGVISFHDVAKA  112 (112)
T ss_pred             CCCHHHHHHHHHHHCCCEEEEEEEC-CEEEEEEEHHHHHCC
T ss_conf             9996999999768669769999999-999999997996359